Query 043789
Match_columns 199
No_of_seqs 110 out of 447
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 14:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043789.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043789hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6c_ f.21.2.2 (C:) Fumarate 41.1 31 0.0022 24.3 5.9 48 80-127 60-112 (130)
2 d2ftxb1 d.300.1.2 (B:155-213) 15.1 29 0.0021 21.1 1.3 8 64-71 46-53 (59)
3 d2q7ra1 f.56.1.1 (A:1-139) Ara 10.3 2.5E+02 0.018 19.0 10.4 44 45-88 38-82 (139)
4 d3b60a2 f.37.1.1 (A:10-328) Mu 7.7 3.4E+02 0.025 18.7 7.8 20 51-70 111-130 (319)
5 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 7.4 44 0.0032 20.9 0.1 17 51-67 18-34 (75)
6 d1h9aa1 c.2.1.3 (A:1-181,A:413 7.3 1.7E+02 0.012 21.0 3.5 47 15-61 50-101 (195)
7 d2h8aa1 f.56.1.1 (A:9-147) Mic 6.4 2.8E+02 0.02 18.4 4.2 32 52-83 56-87 (139)
8 d2axte1 f.23.38.1 (E:3-84) Cyt 6.1 3.3E+02 0.024 17.0 4.8 19 121-139 14-32 (82)
9 d2hdca_ a.4.5.14 (A:) Genesis 5.9 1.1E+02 0.0084 19.7 1.7 21 50-70 23-43 (97)
10 d1d5va_ a.4.5.14 (A:) Adipocyt 5.8 82 0.0059 20.4 0.8 19 51-69 26-44 (94)
No 1
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=41.08 E-value=31 Score=24.29 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=26.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH----HHHhcCC-CceEEcCeeehhHHHHHHH
Q 043789 80 VSLFWNPVSLIILIILIAAWLF----LYFLRDG-DRLVVYGFVIDDRILMTAL 127 (199)
Q Consensus 80 ~~ll~~P~~ll~l~~~~~~~~~----l~~~~~~-~~~~i~gr~~~~~~~~~~l 127 (199)
+..+.||+.+++=++.+++.++ .+...++ -|+.+.|+.++++.+..++
T Consensus 60 v~flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~i~v~~~~~~~~~iv~~~ 112 (130)
T d1kf6c_ 60 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSL 112 (130)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcCccCChHHHHHHH
Confidence 4567889777754444433322 0112222 2677788888887655443
No 2
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.13 E-value=29 Score=21.13 Aligned_cols=8 Identities=38% Similarity=1.016 Sum_probs=6.8
Q ss_pred HHHHHHHH
Q 043789 64 AFYRMNYA 71 (199)
Q Consensus 64 ~yF~~NY~ 71 (199)
.||.+||+
T Consensus 46 ~fF~tnYi 53 (59)
T d2ftxb1 46 DFYKTKYI 53 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 68999996
No 3
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.28 E-value=2.5e+02 Score=19.00 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=29.1
Q ss_pred CCCCCCC-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 043789 45 SIKLPTS-FANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVS 88 (199)
Q Consensus 45 ~fs~P~s-~~~a~~Rv~~Nl~yF~~NY~li~~~~~~~~ll~~P~~ 88 (199)
+.+.|.. -++--+|..+--..+-.|+-+..+.+.+..+..+|..
T Consensus 38 ~v~~p~~~g~~~f~ra~RaH~N~~E~~p~~L~~l~~~~l~~~~~~ 82 (139)
T d2q7ra1 38 NGRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVP 82 (139)
T ss_dssp CCSSCCSCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhHhhHHHHHHHHHHHHhccCHHH
Confidence 3455642 3445667777777777888877777777777777843
No 4
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.69 E-value=3.4e+02 Score=18.69 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHhHHHHHHHH
Q 043789 51 SFANFIERIQSNAAFYRMNY 70 (199)
Q Consensus 51 s~~~a~~Rv~~Nl~yF~~NY 70 (199)
+.++..+|+.......+..+
T Consensus 111 ~~g~~~~~~~~d~~~~~~~~ 130 (319)
T d3b60a2 111 STGTLLSRITYDSEQVASSS 130 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccc
Confidence 45788888887776555443
No 5
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.36 E-value=44 Score=20.93 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHhHHHHH
Q 043789 51 SFANFIERIQSNAAFYR 67 (199)
Q Consensus 51 s~~~a~~Rv~~Nl~yF~ 67 (199)
+++|..+-|..|..||+
T Consensus 18 tL~eIy~~i~~~fpy~r 34 (75)
T d1kq8a_ 18 TLAEINEYLMGKFPFFR 34 (75)
T ss_dssp CHHHHHHHHHHHCTTGG
T ss_pred cHHHHHHHHHHhCcccc
Confidence 34444444444444443
No 6
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=7.31 E-value=1.7e+02 Score=20.96 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=34.6
Q ss_pred CCchhhHHHHHHHhhCCCCCCChhHhhcc-----CCCCCCCCHHHHHHHHHH
Q 043789 15 SSQPLSTRVKRLIESGFGTPRPWDEFIQI-----QSIKLPTSFANFIERIQS 61 (199)
Q Consensus 15 ~~~~~~s~~~~~~~~~l~~~RPw~eF~~~-----~~fs~P~s~~~a~~Rv~~ 61 (199)
+..+|.+.+++.++........|.+|+.. ..+..|.+..++.+++..
T Consensus 50 ~~e~f~~~v~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~l~~ 101 (195)
T d1h9aa1 50 NDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEE 101 (195)
T ss_dssp CHHHHHHHHHHHHGGGCSCHHHHHHHHTTEEEEECCTTCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccchHhhHHHHhhccceeeEeeccHhhHHHHHHHHHH
Confidence 34467777888887766655568899854 467888998888888864
No 7
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.35 E-value=2.8e+02 Score=18.42 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 043789 52 FANFIERIQSNAAFYRMNYAVIILSIIVVSLF 83 (199)
Q Consensus 52 ~~~a~~Rv~~Nl~yF~~NY~li~~~~~~~~ll 83 (199)
.++..+|+++|-..--.|......+++++.+.
T Consensus 56 ~~~~v~R~~rah~N~~E~~~~F~~~~l~~~~~ 87 (139)
T d2h8aa1 56 TDEKVERVRRAHLNDLENIVPFLGIGLLYSLS 87 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 34667899999999999988766665554443
No 8
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.06 E-value=3.3e+02 Score=16.98 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 043789 121 RILMTALLPGTIAFLFLTD 139 (199)
Q Consensus 121 ~~~~~~l~~~s~~ll~~t~ 139 (199)
...|.++-.++++.+|.+|
T Consensus 14 siRYWvIHsiTIPslFiaG 32 (82)
T d2axte1 14 SVRYWVIHSITIPALFIAG 32 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEeecccHHHHhh
Confidence 3568888889999888654
No 9
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.92 E-value=1.1e+02 Score=19.72 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHhHHHHHHHH
Q 043789 50 TSFANFIERIQSNAAFYRMNY 70 (199)
Q Consensus 50 ~s~~~a~~Rv~~Nl~yF~~NY 70 (199)
-+++|..+-|..|..||+.++
T Consensus 23 ltL~eIY~~i~~~fpyfr~~~ 43 (97)
T d2hdca_ 23 LTLSGICEFISNRFPYYREKF 43 (97)
T ss_dssp BCHHHHHHHHHHHCHHHHHHC
T ss_pred ccHHHHHHHHHHhCccccCCC
Confidence 467788888888888887765
No 10
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.84 E-value=82 Score=20.42 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHhHHHHHHH
Q 043789 51 SFANFIERIQSNAAFYRMN 69 (199)
Q Consensus 51 s~~~a~~Rv~~Nl~yF~~N 69 (199)
+++|..+-|..|..||+.+
T Consensus 26 tL~eIY~~i~~~fpyfr~~ 44 (94)
T d1d5va_ 26 TLNGIYQFIMDRFPFYREN 44 (94)
T ss_dssp CHHHHHHHHHHHCTHHHHC
T ss_pred cHHHHHHHHHHHCCccCcc
Confidence 5566666666666666654
Done!