BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043792
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 21/260 (8%)
Query: 24 NATKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEELINYNEEKKLKVFQ 83
+ ++TVCV ASG S LV RLL RGYTV A + + ++ ++ L E L +++
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWK 62
Query: 84 ADPFDYHSLVNALKGCSGLFYSFEPPSDHSTYDE---LTAEVETMAAHNVLEACAQTNTV 140
AD D S A+KGC+G+F+ P S E + +E M ++++CA TV
Sbjct: 63 ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLG--IMKSCAAAKTV 120
Query: 141 DKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLC--KKFKLW-HGLSKTLAEKTAWA 197
++VFTSS V H+ P +DE WSD+ C KK W + +SKTLAE+ AW
Sbjct: 121 RRLVFTSSAGTVNIQEHQ-LPV---YDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWK 176
Query: 198 LAMDRGISMVSINGGLVMGPDVTISNP--------YLKGAAEMYEDGVMAS-VDLRFYVD 248
A + I ++I LV+GP + S P + G Y V L +
Sbjct: 177 YAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCN 236
Query: 249 AHICVFEDVSSYGRYLCFNH 268
AHI +FE+ + GRY+C +H
Sbjct: 237 AHIYLFENPKAEGRYICSSH 256
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 124/261 (47%), Gaps = 27/261 (10%)
Query: 27 KTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEELINYNEEKKLKVFQADP 86
KT CV+ +G AS LV+ LL +GY V+ + + + + L+ E LK+F+AD
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSH-LLELQELGDLKIFRADL 68
Query: 87 FDYHSLVNALKGCSGLFYSFEP---PSDHSTYDELTAEVETMAAHNVLEACAQTNTVDKV 143
D S + GC +F+ P S+ D + ++ + NV++AC + +V +V
Sbjct: 69 TDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVV--NVMKACTRAKSVKRV 126
Query: 144 VFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLCKKFK--LW-HGLSKTLAEKTAWALAM 200
+ TSS AV N + T DE+NW+D+ K W + SKTLAEK AW A
Sbjct: 127 ILTSSAAAVTINQL--DGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAE 184
Query: 201 DRGISMVSINGGLVMGPDVTISNPYLKGAA-------EMYEDGVM------ASVDLRFYV 247
+ I ++++ L+ G +T P G A E +G+ SV +
Sbjct: 185 ENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVE 244
Query: 248 D---AHICVFEDVSSYGRYLC 265
D AHI V E S+ GRY+C
Sbjct: 245 DVCRAHIFVAEKESASGRYIC 265
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 17/265 (6%)
Query: 29 VCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEELINY-NEEKKLKVFQADPF 87
VCV +G S +++ LL GY+V+ + + + L N +KL F AD
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 88 DYHSLVNALKGCSGLFYSFEPPS-DHSTYDELTAEVETMAAHNVLEACAQTNTVDKVVFT 146
+ S A++GC G+F++ P S +E+ + A +L+AC + TV + ++T
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 147 SSLTAVVWNNHRDNPTSHDFDERNWSDVNLCKKFKLW---HGLSKTLAEKTAWALAMDRG 203
SS +AV +N + DE +WSDV+L + K + + +SKTLAEK G
Sbjct: 124 SSGSAVSFNGKDKDV----LDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNG 179
Query: 204 ISMVSINGGLVMGPDVTISNPYLKGAAEMYEDGVMASVDL-RFYV-------DAHICVFE 255
I +V++ ++G V P A + G + + RF++ AHI + E
Sbjct: 180 IDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLE 239
Query: 256 DVSSYGRYLCFNHVINCNEDAMKLA 280
+ GRY C ++ E + L+
Sbjct: 240 NSVPGGRYNCSPFIVPIEEMSQLLS 264
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 21/205 (10%)
Query: 29 VCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEEL-INYNEEKKLKVFQADPF 87
V V A+G AS +V +LL GY V + KL +++ Y + V + D
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE-DML 72
Query: 88 DYHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETMAAHNVLEACAQTNTVDKVVFTS 147
+ +KG +G+ + S + YDE+ N L A A T +V + V TS
Sbjct: 73 KQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPA-IGGTLNALRAAAATPSVKRFVLTS 131
Query: 148 S-LTAVVWNNHRDNPTSHDFDERNWSDVNLCK---------KFKLW-HGLSKTLAEKTAW 196
S ++A++ + N DE++W+ ++ K + LW + SKT AE AW
Sbjct: 132 STVSALI---PKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAW 188
Query: 197 ALAMDRGISMVSINGGLVMGPDVTI 221
MD ++N L P+ TI
Sbjct: 189 KF-MDENKPHFTLNAVL---PNYTI 209
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 29 VCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEEL-INYNEEKKLKVFQADPF 87
V V A+G AS +V +LL GY V + KL +++ Y + V + D
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE-DXL 72
Query: 88 DYHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETMAAHNVLEACAQTNTVDKVVFTS 147
+ +KG +G+ + S + YDE+ N L A A T +V + V TS
Sbjct: 73 KQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPA-IGGTLNALRAAAATPSVKRFVLTS 131
Query: 148 S-LTAVVWNNHRDNPTSHDFDERNWSDVNLCK---------KFKLW-HGLSKTLAEKTAW 196
S ++A++ + N DE++W+ ++ K + LW + SKT AE AW
Sbjct: 132 STVSALI---PKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAW 188
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 26 TKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEELINYNEEKKLKVFQAD 85
K + ++ ASG SAL+ L RG+ V A + + K++ E + LKV +AD
Sbjct: 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI---------ENEHLKVKKAD 54
Query: 86 PFDYHSLVNALKGCSGLFYSFEPP-SDHSTYDE 117
+ KG + +F P ++ YDE
Sbjct: 55 VSSLDEVCEVCKGADAVISAFNPGWNNPDIYDE 87
>pdb|1XHX|A Chain A, Phi29 Dna Polymerase, Orthorhombic Crystal Form
pdb|1XHX|B Chain B, Phi29 Dna Polymerase, Orthorhombic Crystal Form
pdb|1XHX|C Chain C, Phi29 Dna Polymerase, Orthorhombic Crystal Form
pdb|1XHX|D Chain D, Phi29 Dna Polymerase, Orthorhombic Crystal Form
pdb|1XHZ|A Chain A, Phi29 Dna Polymerase, Orthorhombic Crystal Form, Ssdna
Complex
pdb|1XHZ|B Chain B, Phi29 Dna Polymerase, Orthorhombic Crystal Form, Ssdna
Complex
pdb|1XHZ|C Chain C, Phi29 Dna Polymerase, Orthorhombic Crystal Form, Ssdna
Complex
pdb|1XHZ|D Chain D, Phi29 Dna Polymerase, Orthorhombic Crystal Form, Ssdna
Complex
pdb|1XI1|A Chain A, Phi29 Dna Polymerase Ssdna Complex, Monoclinic Crystal
Form
pdb|1XI1|B Chain B, Phi29 Dna Polymerase Ssdna Complex, Monoclinic Crystal
Form
pdb|2EX3|A Chain A, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|C Chain C, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|E Chain E, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|G Chain G, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|I Chain I, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|K Chain K, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2PY5|A Chain A, Phi29 Dna Polymerase Complexed With Single-stranded Dna
pdb|2PY5|B Chain B, Phi29 Dna Polymerase Complexed With Single-stranded Dna
pdb|2PYJ|A Chain A, Phi29 Dna Polymerase Complexed With Primer-Template Dna
And Incoming Nucleotide Substrates (Ternary Complex)
pdb|2PYJ|B Chain B, Phi29 Dna Polymerase Complexed With Primer-Template Dna
And Incoming Nucleotide Substrates (Ternary Complex)
pdb|2PYL|A Chain A, Phi29 Dna Polymerase Complexed With Primer-Template Dna
And Incoming Nucleotide Substrates (Ternary Complex)
pdb|2PZS|A Chain A, Phi29 Dna Polymerase Complexed With Primer-Template Dna
(Post-Translocation Binary Complex)
pdb|2PZS|B Chain B, Phi29 Dna Polymerase Complexed With Primer-Template Dna
(Post-Translocation Binary Complex)
pdb|2PZS|C Chain C, Phi29 Dna Polymerase Complexed With Primer-Template Dna
(Post-Translocation Binary Complex)
pdb|2PZS|D Chain D, Phi29 Dna Polymerase Complexed With Primer-Template Dna
(Post-Translocation Binary Complex)
Length = 575
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 179 KFKLWHGLSKTLAEKTAWALAMDRG-------ISMVSINGGLVMGPDVTISNPYLK-GAA 230
KFK GL K +K + G + + S+ G PDVT PYLK A
Sbjct: 352 KFKATTGLFKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGA 411
Query: 231 EMYEDGVMASVDLRFYVDAHICVFEDVSSYGRYL-------CFNHVINCNEDAMKLA 280
+ G + D V + VF ++++ RY C++ +I C+ D++ L
Sbjct: 412 LGFRLGEEETKDP---VYTPMGVF--ITAWARYTTITAAQACYDRIIYCDTDSIHLT 463
>pdb|1K6I|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Trigonal Form)
pdb|1K6J|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6J|B Chain B, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6X|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator In Complex With Nad At 1.5 A Resolution
(Trigonal Form)
pdb|1TI7|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator, In Complex With Nadp At 1.7a Resolution
pdb|2VUS|A Chain A, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|B Chain B, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|C Chain C, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|D Chain D, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|E Chain E, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|F Chain F, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|G Chain G, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|H Chain H, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|A Chain A, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|B Chain B, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|C Chain C, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|D Chain D, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|E Chain E, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|F Chain F, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|G Chain G, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|H Chain H, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|A Chain A, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|B Chain B, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|C Chain C, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|D Chain D, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|E Chain E, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|F Chain F, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|G Chain G, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|H Chain H, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 352
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 23 SNATKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEEL 70
+ KT+ V++A+G A++L+R G+ V A +H+ L I EEL
Sbjct: 2 AQQKKTIAVVNATGRQAASLIRVAAAVGHHVRAQVHSLKGL--IAEEL 47
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 73/202 (36%), Gaps = 41/202 (20%)
Query: 29 VCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEELINYNEEKKLKVFQADPFD 88
V V +G S +V LL RG V A L N L + E N K + F+ D D
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEV-AVLDN---LATGKRE----NVPKGVPFFRVDLRD 54
Query: 89 YHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETMAAHNVL-------------EACA 135
+ A F F P H ++ A V+ VL EAC
Sbjct: 55 KEGVERA-------FREFRP--THVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACR 105
Query: 136 QTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLCKKFKLWHGLSKTLAEKTA 195
Q V+K+VF S+ A+ + + P +E W + K + SK E
Sbjct: 106 QYG-VEKLVFASTGGAI----YGEVPEGERAEE-TWP-----PRPKSPYAASKAAFEHYL 154
Query: 196 WALAMDRGISMVSINGGLVMGP 217
G+ VS+ G V GP
Sbjct: 155 SVYGQSYGLKWVSLRYGNVYGP 176
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 23 SNATKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEEELINYNEEKKLKVF 82
S + K V+D + FA L R L RGY V A +N+++ LK+
Sbjct: 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQA----------------HNKDEALKLA 47
Query: 83 QADPFDYHSLVNALKGCSGL 102
A+ F++ ++ L SGL
Sbjct: 48 GAEKFEFITVXLHLGNDSGL 67
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 150 TAVVWNNHRDNPTSHDFDERNWSDVNLCKKFKLWHGLSKTLAEKTAWALAMDRGISMVSI 209
T VVW+ H P H ++ ++C + K G +T +KT L +D
Sbjct: 87 TTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQ-QGYEQTFRDKT--GLLLDP------- 136
Query: 210 NGGLVMGPDVTISNPYLKGAAEMYEDG--VMASVD--LRFYVDAHICVFEDVSSYGRYLC 265
G V ++GA E E+G + ++D L + + D S+ R L
Sbjct: 137 ---YFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKAAHITDYSNASRTLX 193
Query: 266 FN-HVINCNEDAMKL 279
FN H + +++ ++L
Sbjct: 194 FNIHDLEWDDELLEL 208
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 128 HNVLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDV 174
HN A N V+++ + V++N +NPT + ++++W +
Sbjct: 159 HNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSI 205
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 80 KVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTY-----DELTAEVETMAAHNVLEAC 134
KV AD F + + +G +FY +P HS E A V T+ VL+ C
Sbjct: 636 KVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQC 695
Query: 135 AQT 137
T
Sbjct: 696 MAT 698
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 80 KVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTY-----DELTAEVETMAAHNVLEAC 134
KV AD F + + +G +FY +P HS E A V T+ VL+ C
Sbjct: 628 KVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQC 687
Query: 135 AQT 137
T
Sbjct: 688 MAT 690
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 80 KVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTY-----DELTAEVETMAAHNVLEAC 134
KV AD F + + +G +FY +P HS E A V T+ VL+ C
Sbjct: 648 KVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQC 707
Query: 135 AQT 137
T
Sbjct: 708 MAT 710
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,635,211
Number of Sequences: 62578
Number of extensions: 339790
Number of successful extensions: 821
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 20
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)