BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043794
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 131/205 (63%), Gaps = 18/205 (8%)
Query: 31 VANLVTPEFFDGIKNVADPSSPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAAFFA 89
V +++ FF+G+ A S GK FYT +AF+ AAN+Y FG+ GS D KRE+AAFFA
Sbjct: 2 VGGIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFFA 61
Query: 90 HVTHETGHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGF 149
+V HETG LCY+ E + YC +S+T +PC GK Y+GRGP+QL+ N NYGAAG++IGF
Sbjct: 62 NVMHETGGLCYINEKNPPINYCQSSST-WPCTSGKSYHGRGPLQLSWNYNYGAAGKSIGF 120
Query: 150 DGLNSPETVANDPM-------------TNVHSVVN--QGFGATIQRINGALECGGKQPDK 194
DGLN+PE V D +N HS + QGFG TI+ IN ++EC G +
Sbjct: 121 DGLNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAIN-SMECNGGNSGE 179
Query: 195 VQARIGYYTDYCNKFGVSPGENLSC 219
V +R+ YY C++ GV PG N+SC
Sbjct: 180 VSSRVNYYKKICSQLGVDPGANVSC 204
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 119/228 (52%), Gaps = 46/228 (20%)
Query: 38 EFFDGIKNVADPSSPGKSFYTRDAFLNAANSYPEFG-SGSTDDSKREIAAFFAHVTHET- 95
+F+ +K++ D F+T DAF+ AA S+P FG +G K+EIAAFF +HET
Sbjct: 13 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 72
Query: 96 ------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAA 143
CY EEIDKS+ +CD++N ++PC PGKFYYGRGP+ L+ N NYG
Sbjct: 73 GGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 132
Query: 144 GQAIGFDGLNSPETVANDPMT-----------------NVHSVVNQ-------------- 172
G+ +G + L +P+ ++DP+ + H V+
Sbjct: 133 GRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRL 192
Query: 173 -GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
G+G ING LEC G+ KVQ RI +YT YC FGV PG N+ C
Sbjct: 193 PGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 240
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 119/228 (52%), Gaps = 46/228 (20%)
Query: 38 EFFDGIKNVADPSSPGKSFYTRDAFLNAANSYPEFG-SGSTDDSKREIAAFFAHVTHET- 95
+F+ +K++ D F+T DAF+ AA S+P FG +G K+EIAAFF +HET
Sbjct: 10 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 69
Query: 96 ------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAA 143
CY EEIDKS+ +CD++N ++PC PGKFYYGRGP+ L+ N NYG
Sbjct: 70 GGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 129
Query: 144 GQAIGFDGLNSPETVANDPMT-----------------NVHSVVNQ-------------- 172
G+ +G + L +P+ ++DP+ + H V+
Sbjct: 130 GRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRL 189
Query: 173 -GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
G+G ING LEC G+ KVQ RI +YT YC FGV PG N+ C
Sbjct: 190 PGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 237
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 118/228 (51%), Gaps = 46/228 (20%)
Query: 38 EFFDGIKNVADPSSPGKSFYTRDAFLNAANSYPEFG-SGSTDDSKREIAAFFAHVTHET- 95
+F+ +K++ D F+T DAF+ AA S+P FG +G K+EIAAFF +HET
Sbjct: 12 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 71
Query: 96 ------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAA 143
CY E IDKS+ +CD++N ++PC PGKFYYGRGP+ L+ N NYG
Sbjct: 72 GGWSGAPDGANTWGYCYKEAIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 131
Query: 144 GQAIGFDGLNSPETVANDPMT-----------------NVHSVVNQ-------------- 172
G+ +G + L +P+ ++DP+ + H V+
Sbjct: 132 GRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRL 191
Query: 173 -GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
G+G ING LEC G+ KVQ RI +YT YC FGV PG N+ C
Sbjct: 192 PGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 239
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 123/236 (52%), Gaps = 48/236 (20%)
Query: 31 VANLVTPEFFDG-IKNVADPSSPGKSFYTRDAFLNAANSYPEFG-SGSTDDSKREIAAFF 88
V+++++ FD + + D + K FYT DAF+ AAN++P FG +GSTD KR++AAF
Sbjct: 3 VSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFL 62
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
A +HET C+ +E + YC T + Q+PC PGK YYGRGPIQL+
Sbjct: 63 AQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYC-TPSAQWPCAPGKRYYGRGPIQLS 121
Query: 136 GNGNYGAAGQAIGFDGLNSPETVANDPMTNV-----------------HSVVN------- 171
N NYG AG+AIG D L +P+ VA DP + H+V+
Sbjct: 122 HNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSG 181
Query: 172 --------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
GFG ING LECG Q +V RIG+Y YC+ GV G+NL C
Sbjct: 182 ADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 237
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 121/238 (50%), Gaps = 50/238 (21%)
Query: 29 SQVANLVTPEFFDGI-KNVADPSSPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAA 86
++V +++ FD + K+ D + GK FY+ +AF+ AA S+ FG+ G ++ KRE+AA
Sbjct: 1 AEVGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAA 60
Query: 87 FFAHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQ 133
F A +HET C+V E DKSN YCD S PC GK YYGRGPIQ
Sbjct: 61 FLAQTSHETTGGAATSPDGPYAWGYCFVTERDKSNRYCDGSG---PCSAGKSYYGRGPIQ 117
Query: 134 LTGNGNYGAAGQAIGFDGLNSPETVANDPMT-----------------NVHSVVNQ---- 172
LT N NY AAG+A+G D +N+P+ VA D + + H V+
Sbjct: 118 LTHNYNYNAAGRALGVDLINNPDLVARDAVVSFKTALWFWMTPQGNKPSCHDVITNRWTP 177
Query: 173 -----------GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
GFG ING LECG RIG+Y YC+ FGVS G NL+C
Sbjct: 178 SAADKAANRVPGFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLNC 235
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 118/236 (50%), Gaps = 48/236 (20%)
Query: 31 VANLVTPEFFDG-IKNVADPSSPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAAFF 88
+ +++ FD +K+ +P+ P K FYT DAF+ AA S+P FG+ GSTD KREIAAF
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFL 61
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
+HET C+++E + S+ YC S +YPC PGK YYGRGPIQL+
Sbjct: 62 GQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPS-PRYPCAPGKSYYGRGPIQLS 120
Query: 136 GNGNYGAAGQAIGFDGLNSPETVAND-----------------PMTNVHSVVN------- 171
N NYG G+A+ + L +P+ VA D P + H V+
Sbjct: 121 WNYNYGPCGEALRVNLLGNPDLVATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPSA 180
Query: 172 --------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
G+G ING LECG +V RIG++ YC GV G NL C
Sbjct: 181 ADTAAGRLPGYGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGTGNNLDC 236
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 25/189 (13%)
Query: 55 SFYTRDAFLNAANSYPEFG-SGSTDDSKREIAAFFAHVTHETGHLCYVEEIDKSN--AYC 111
+FYT +A ++YP F +GS + KRE AAF A+V+HETG L Y++E++++N YC
Sbjct: 78 AFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHETGGLFYIKEVNEANYPHYC 137
Query: 112 DTSNTQYPCVPGKF-YYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDP-------- 162
DT+ + Y C G+ YYGRGPIQL+ N NY AAG A+G + L +P V DP
Sbjct: 138 DTTQS-YGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGL 196
Query: 163 -----------MTNVHSVVNQ-GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFG 210
MT +++VN GFG TI+ INGALEC G P +VQ+RI +T + G
Sbjct: 197 WYWNSQNGPGTMTPHNAIVNNAGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILG 256
Query: 211 VSPGENLSC 219
+ G NLSC
Sbjct: 257 TTTGPNLSC 265
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 113/189 (59%), Gaps = 25/189 (13%)
Query: 55 SFYTRDAFLNAANSYPEFG-SGSTDDSKREIAAFFAHVTHETGHLCYVEEIDKSN--AYC 111
+FYT +A ++YP F +GS + KRE AAF A+V+H+TG L Y++E++++N YC
Sbjct: 78 AFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHQTGGLFYIKEVNEANYPHYC 137
Query: 112 DTSNTQYPCVPGKF-YYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDP-------- 162
DT+ + Y C G+ YYGRGPIQL+ N NY AAG A+G + L +P V DP
Sbjct: 138 DTTQS-YGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGL 196
Query: 163 -----------MTNVHSVVNQ-GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFG 210
MT +++VN GFG TI+ INGALEC G P +VQ+RI +T + G
Sbjct: 197 WYWNSQNGPGTMTPHNAIVNNAGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILG 256
Query: 211 VSPGENLSC 219
+ G NLSC
Sbjct: 257 TTTGPNLSC 265
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 116/236 (49%), Gaps = 50/236 (21%)
Query: 31 VANLVTPEFFDGI-KNVADPSSPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAAFF 88
V +++ FD + K+ DP+ GK FY+ +AF+ AA S+ FG+ G T+ KRE+AAF
Sbjct: 2 VGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFL 61
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
A +HET C+V E DKSN YCD PC GK YYGRGPIQLT
Sbjct: 62 AQTSHETTGGAAGSPDGPYAWGYCFVTERDKSNKYCDPGT---PCPAGKSYYGRGPIQLT 118
Query: 136 GNGNYGAAGQAIGFDGLNSPETVAND--------------PMTN---VHSVVNQ------ 172
N NY AG+A+G D +N+P+ VA D P N H V+
Sbjct: 119 HNYNYAQAGRALGVDLINNPDLVARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPSA 178
Query: 173 ---------GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
GFG ING +ECG RIG+Y YC+ +S G NL+C
Sbjct: 179 ADVAANRTPGFGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHLSYGPNLNC 234
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 121/236 (51%), Gaps = 48/236 (20%)
Query: 31 VANLVTPEFFDG-IKNVADPSSPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAAFF 88
V+++V+ FD + + D + K FYT DAF+ AA ++P FG+ GS D KRE+AAF
Sbjct: 2 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFL 61
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
A +HET C+ +E S+ YC T + Q+PC PGK YYGRGPIQL+
Sbjct: 62 AQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYC-TPSAQWPCAPGKRYYGRGPIQLS 120
Query: 136 GNGNYGAAGQAIGFDGLNSPETVAND-----------------PMTNVHSVVN------- 171
N NYG AG+AIG D L +P+ VA D P + H+V+
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSG 180
Query: 172 --------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
GFG ING +ECG Q +V RIG+Y YC+ GV G NL C
Sbjct: 181 ADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 105/189 (55%), Gaps = 25/189 (13%)
Query: 55 SFYTRDAFLNAANSYPEFG-SGSTDDSKREIAAFFAHVTHETGHLCYVEEIDKSN--AYC 111
SFYT A ++YP F +GS K+E AAF A+V HETG L YV E + +N YC
Sbjct: 17 SFYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANVGHETGGLVYVVEQNTANYPHYC 76
Query: 112 DTSNTQYPCVPGK-FYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDP-------- 162
D S Y C G YYGRGP+QL+ N NY AAG A+G D LN+P+ V ND
Sbjct: 77 DASQP-YGCPAGNDKYYGRGPVQLSWNFNYKAAGDALGIDLLNNPDLVQNDSAVAWKTGL 135
Query: 163 -----------MTNVHSVVN-QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFG 210
MT ++VN GFG TI+ ING+LEC G P +VQ+RI Y + G
Sbjct: 136 WYWNTQTGPGTMTPHDAMVNGAGFGETIRSINGSLECDGGNPGQVQSRIDNYERFTQLLG 195
Query: 211 VSPGENLSC 219
V PG NLSC
Sbjct: 196 VEPGGNLSC 204
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 120/236 (50%), Gaps = 48/236 (20%)
Query: 31 VANLVTPEFFDG-IKNVADPSSPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAAFF 88
V+++V+ FD + + D + K FYT DAF+ AA ++ FG+ GS D KRE+AAF
Sbjct: 2 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQKREVAAFL 61
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
A +HET C+ +E S+ YC T + Q+PC PGK YYGRGPIQL+
Sbjct: 62 AQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYC-TPSAQWPCAPGKRYYGRGPIQLS 120
Query: 136 GNGNYGAAGQAIGFDGLNSPETVAND-----------------PMTNVHSVV-------- 170
N NYG AG+AIG D L +P+ VA D P + H+V+
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVSFKTAMWFWMTAQPPKPSSHAVIVGQWSPSG 180
Query: 171 -------NQGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
GFG ING +ECG Q +V RIG+Y YC+ GV G NL C
Sbjct: 181 ADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 120/236 (50%), Gaps = 48/236 (20%)
Query: 31 VANLVTPEFFDGIK-NVADPSSPGKSFYTRDAFLNAANSYPEFG-SGSTDDSKREIAAFF 88
V ++V + F+ + + D + P + FYT +AFL AA ++P FG +G+T+ KRE+AAF
Sbjct: 58 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFL 117
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
+HET C+ +E + + YC S ++PC PG+ YYGRGPIQL+
Sbjct: 118 GQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPS-PEWPCAPGRKYYGRGPIQLS 176
Query: 136 GNGNYGAAGQAIGFDGLNSPETVAND--------------PMTN---VHSVVN------- 171
N NYG AG+AIG D L++P+ VA D P N H V+
Sbjct: 177 FNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSP 236
Query: 172 --------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219
G+G +NG LECG D+V RIG+Y YC FG+ G NL C
Sbjct: 237 ADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC 292
>pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|B Chain B, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|C Chain C, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|D Chain D, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|E Chain E, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|F Chain F, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
Length = 596
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 44 KNVAD-PSSPGKSFYTRDAFLNAANSYPEFGSG 75
+N+AD SPGKSF AF + +P +GSG
Sbjct: 452 QNIADGDVSPGKSFLLPMAFAEGSPFHPSYGSG 484
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,339,410
Number of Sequences: 62578
Number of extensions: 324103
Number of successful extensions: 636
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 26
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)