Query 043794
Match_columns 219
No_of_seqs 180 out of 903
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00325 chitinase_glyco_hydro_ 100.0 7.5E-60 1.6E-64 409.2 14.3 185 35-219 1-230 (230)
2 PF00182 Glyco_hydro_19: Chiti 100.0 1.3E-59 2.8E-64 408.5 9.5 185 34-219 1-232 (232)
3 KOG4742 Predicted chitinase [G 100.0 2E-53 4.3E-58 375.2 13.4 190 30-219 61-286 (286)
4 COG3179 Predicted chitinase [G 100.0 9.3E-37 2E-41 254.9 9.9 158 33-209 2-204 (206)
5 cd00442 lysozyme_like lysozyme 99.0 1.4E-10 2.9E-15 89.0 1.0 67 85-162 1-67 (105)
6 PF07172 GRP: Glycine rich pro 59.9 6.9 0.00015 29.8 2.0 19 14-32 6-24 (95)
7 PF09447 Cnl2_NKP2: Cnl2/NKP2 46.4 16 0.00034 26.2 1.9 20 29-48 14-33 (67)
8 cd08327 CARD_RAIDD Caspase act 34.0 26 0.00056 26.6 1.5 39 32-70 33-80 (94)
9 PRK11548 outer membrane biogen 29.8 70 0.0015 24.7 3.4 31 15-45 7-48 (113)
10 TIGR01944 rnfB electron transp 28.0 2E+02 0.0043 23.5 6.0 36 31-68 29-64 (165)
11 PRK05113 electron transport co 24.1 2.2E+02 0.0047 24.0 5.7 37 30-68 30-66 (191)
12 PF12451 VPS11_C: Vacuolar pro 23.2 36 0.00079 22.6 0.6 18 86-103 23-40 (49)
13 PF07172 GRP: Glycine rich pro 23.0 64 0.0014 24.5 2.0 23 7-29 3-25 (95)
No 1
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=7.5e-60 Score=409.22 Aligned_cols=185 Identities=59% Similarity=1.091 Sum_probs=168.7
Q ss_pred CCHHHHHhccccC-CCCCCCCCcccHHHHHHHHhcccccCC-CCCCCCHHHHHHhhhhccccCCCceehhccCCCC-CCc
Q 043794 35 VTPEFFDGIKNVA-DPSSPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAAFFAHVTHETGHLCYVEEIDKSN-AYC 111 (219)
Q Consensus 35 iT~~~f~~i~p~~-~~~~~~~~~yt~~~f~~a~n~~~~fg~-g~~i~t~~~~A~FLAq~~hETg~f~~~~E~~~~~-~Y~ 111 (219)
||+++|++|||++ +..|++++||||++|++|+++||.|++ |++.++++|+||||||++|||++|++++|....+ .||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c 80 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC 80 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence 7999999999997 567999999999999999999999998 9999999999999999999999999999876543 455
Q ss_pred cCCC----------CCCcCCCCCccccCcccccccchhHHHHHHHhCCCCCCCccccccCC-----------C------c
Q 043794 112 DTSN----------TQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDP-----------M------T 164 (219)
Q Consensus 112 ~~~n----------~~y~~gDG~~YrGRG~iQLTg~~NY~~~g~~lg~Dll~nPdlva~~~-----------~------~ 164 (219)
+... ..|+|+||++|||||+||||||+||+++++++|+|||+|||+|++|+ | +
T Consensus 81 ~~~e~~~~~~~~~~~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~WfW~t~~~~k~ 160 (230)
T cd00325 81 DKSETGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGPKP 160 (230)
T ss_pred ccccCCCcccccccCCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhheeeCCCCCC
Confidence 4321 46899999999999999999999999999999999999999999977 2 4
Q ss_pred chhhhh---------------ccChhhhhhhhcCccccCCCCchhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 043794 165 NVHSVV---------------NQGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219 (219)
Q Consensus 165 ~~~~~a---------------d~gf~~~t~~INGglEc~~~~~~g~~~R~~~y~~~~~~lgv~~g~~l~c 219 (219)
++|++| .+||+.||+|||||+||++++++++++|+++|+++|++|||+||+||+|
T Consensus 161 s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C 230 (230)
T cd00325 161 SCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230 (230)
T ss_pred CcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 678776 1579999999999999999999999999999999999999999999999
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=1.3e-59 Score=408.53 Aligned_cols=185 Identities=56% Similarity=1.036 Sum_probs=152.2
Q ss_pred CCCHHHHHhccccCC-CCCCCCCcccHHHHHHHHhcccccCC-CCCCCCHHHHHHhhhhccccCCCceehhccCCCC---
Q 043794 34 LVTPEFFDGIKNVAD-PSSPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAAFFAHVTHETGHLCYVEEIDKSN--- 108 (219)
Q Consensus 34 ~iT~~~f~~i~p~~~-~~~~~~~~yt~~~f~~a~n~~~~fg~-g~~i~t~~~~A~FLAq~~hETg~f~~~~E~~~~~--- 108 (219)
|||+++|++|||+++ ..|++++||||++||+|+++||+|++ |++.+++||+||||||++|||++|.+++|.....
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~gy 80 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAWGY 80 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGGTT
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccccccccc
Confidence 699999999999976 78999999999999999999999998 9999999999999999999999999988865321
Q ss_pred ----------CCccCCCCCCcCCCCCccccCcccccccchhHHHHHHHhCCCCCCCccccccCC-----------C----
Q 043794 109 ----------AYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDP-----------M---- 163 (219)
Q Consensus 109 ----------~Y~~~~n~~y~~gDG~~YrGRG~iQLTg~~NY~~~g~~lg~Dll~nPdlva~~~-----------~---- 163 (219)
.||+. +..|+|+||++|||||+|||||++||+++++++|+|||+|||||++|+ |
T Consensus 81 c~~~e~~~~~~y~~~-~~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~dl~~nP~lv~~d~~~a~~sA~wfW~~~~~ 159 (232)
T PF00182_consen 81 CYKREKGANSDYCNR-NGNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGLDLLNNPDLVATDPWLAFKSAIWFWMTPQP 159 (232)
T ss_dssp S-SB-SS-SSGG--T-TSSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS-TTT-TTHHHH-HHHHHHHHHHHHHHSBT
T ss_pred ccccccCCccccccC-ccCccCCCCCeEecccccccchhhhHHHHHHHhCCccccChHHHHhhHHHHHHhhhhheeecCC
Confidence 34443 357889999999999999999999999999999999999999999987 2
Q ss_pred --cchhhhhc---------------cChhhhhhhhcCccccCCCCchhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 043794 164 --TNVHSVVN---------------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 219 (219)
Q Consensus 164 --~~~~~~ad---------------~gf~~~t~~INGglEc~~~~~~g~~~R~~~y~~~~~~lgv~~g~~l~c 219 (219)
+++|+++. +|||.||+|||||+||+++++.++.+|+++|+++|++|||+||+||+|
T Consensus 160 ~~ps~h~vi~~~w~p~~~~~~~~r~~gfG~t~~iINgg~Ec~~~~~~~~~~Ri~~y~~~~~~~~v~~g~nl~C 232 (232)
T PF00182_consen 160 PKPSCHDVITGQWTPSAADLAAGRVPGFGATTNIINGGLECGGGNTDQVQNRIGYYKRYCDMLGVDPGDNLDC 232 (232)
T ss_dssp TBSSHHHHHTTSS-HHHHHHHTTTTSSHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHT----S----
T ss_pred CccCcchhcccccCCchhhhhhccCCCcchhhhhccCccccCCCCchHHhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 47888873 489999999999999999999999999999999999999999999999
No 3
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=2e-53 Score=375.16 Aligned_cols=190 Identities=58% Similarity=1.024 Sum_probs=173.6
Q ss_pred cccCCCCHHHHHhccccCCCC-CCCCCcccHHHHHHHHhcccccCC-CCCCCCHHHHHHhhhhccccC---------C--
Q 043794 30 QVANLVTPEFFDGIKNVADPS-SPGKSFYTRDAFLNAANSYPEFGS-GSTDDSKREIAAFFAHVTHET---------G-- 96 (219)
Q Consensus 30 ~v~~~iT~~~f~~i~p~~~~~-~~~~~~yt~~~f~~a~n~~~~fg~-g~~i~t~~~~A~FLAq~~hET---------g-- 96 (219)
.++++||+++|+.||++++.+ |++++||||++|+.|.+.|++||+ |...+.+||+|+||||+.||| |
T Consensus 61 ~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~ 140 (286)
T KOG4742|consen 61 KIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPF 140 (286)
T ss_pred cccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCCCcc
Confidence 489999999999999998776 999999999999999999999998 888899999999999999999 6
Q ss_pred --CceehhccCC-CCCCccCCCCC-CcCCCCCccccCcccccccchhHHHHHHHhCCCCCCCccccccCC----------
Q 043794 97 --HLCYVEEIDK-SNAYCDTSNTQ-YPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDP---------- 162 (219)
Q Consensus 97 --~f~~~~E~~~-~~~Y~~~~n~~-y~~gDG~~YrGRG~iQLTg~~NY~~~g~~lg~Dll~nPdlva~~~---------- 162 (219)
+|++.+|+.. ...||+.++.. |||..|+.|+|||+|||+|+|||++++++||+|||+|||+|++|+
T Consensus 141 ~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alWf 220 (286)
T KOG4742|consen 141 YWGFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRGPIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALWF 220 (286)
T ss_pred ccCcccccccChhhhccCCcccceEeecCCCCcccccCcccccccccccHhHhhcCchhhcCcchhccCchhhhheeeee
Confidence 8999999987 55899998877 999999999999999999999999999999999999999999888
Q ss_pred -Cc----chhhhh---ccChhhhhhhhcCccccCCCCch-hHHHHHHHHHHHHHHcCCCCCCCCCC
Q 043794 163 -MT----NVHSVV---NQGFGATIQRINGALECGGKQPD-KVQARIGYYTDYCNKFGVSPGENLSC 219 (219)
Q Consensus 163 -~~----~~~~~a---d~gf~~~t~~INGglEc~~~~~~-g~~~R~~~y~~~~~~lgv~~g~~l~c 219 (219)
|+ .+++.+ .+|||.||++|||++||++++.+ ..++|+++|+.+|++|||+||+||+|
T Consensus 221 wmt~~~p~~~~~a~~~~~gFGaTt~~Ing~~EC~~~~~~~~~~~Ri~~y~~~c~~fGv~pG~nLsC 286 (286)
T KOG4742|consen 221 WMTPVRPVLNDFAAYDTPGFGATTRAINGDLECGGGNLDGVKARRIKYYLAYCGLFGVNPGPNLSC 286 (286)
T ss_pred eccCCchhhhhhhcccCCCcchhhhhhccceeccCCCCCcchhHHHHHHHHHHHhhCCCCCCCCCC
Confidence 33 334433 25899999999999999999854 55569999999999999999999999
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=100.00 E-value=9.3e-37 Score=254.92 Aligned_cols=158 Identities=25% Similarity=0.373 Sum_probs=137.1
Q ss_pred CCCCHHHHHhccccCCCCCCCCCcccHHHHHHHHhc-ccccCCCCCCCCHHHHHHhhhhccccCCCceehhccCCCC---
Q 043794 33 NLVTPEFFDGIKNVADPSSPGKSFYTRDAFLNAANS-YPEFGSGSTDDSKREIAAFFAHVTHETGHLCYVEEIDKSN--- 108 (219)
Q Consensus 33 ~~iT~~~f~~i~p~~~~~~~~~~~yt~~~f~~a~n~-~~~fg~g~~i~t~~~~A~FLAq~~hETg~f~~~~E~~~~~--- 108 (219)
..||+.+|.+|+|++.+ ....++.|+.. +.+|| |++|.|+||||||++||||+|..+.|+.++|
T Consensus 2 ~~i~e~~~~ki~p~a~k--------~~~~v~~al~~~l~~~g----i~~p~r~AmFlAQ~~HESggf~rl~EnlnYSaq~ 69 (206)
T COG3179 2 KTITEVDLRKIFPKARK--------EFVDVIVALQPALDEAG----ITTPLRQAMFLAQVMHESGGFTRLDENLNYSAQG 69 (206)
T ss_pred cchhHHHHHHhcchhhh--------hhHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHhhhcCCceeehhhcchHHHH
Confidence 46899999999998642 13556777776 68998 9999999999999999999999999998875
Q ss_pred -------CCc----------------------cCCCCCCcCCCCCccccCcccccccchhHHHHHHHhCCCCCCCccccc
Q 043794 109 -------AYC----------------------DTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVA 159 (219)
Q Consensus 109 -------~Y~----------------------~~~n~~y~~gDG~~YrGRG~iQLTg~~NY~~~g~~lg~Dll~nPdlva 159 (219)
.|- +.+|.+..++|||+|||||.|||||+.||..+++++|.||+.||+++.
T Consensus 70 L~~tf~~r~~~~~~a~~~~g~p~aian~~y~~RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~dlv~~P~~~~ 149 (206)
T COG3179 70 LLQTFPKRFPDFRYAREIAGNPPAIANRVYGTRLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGLDLVANPGQLE 149 (206)
T ss_pred HHHhccccCCchhhhhhhccChHHHHhhhhcccccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCCCccCChhhhc
Confidence 111 125666678999999999999999999999999999999999999999
Q ss_pred cCC-----------CcchhhhhccC-hhhhhhhhcCccccCCCCchhHHHHHHHHHHHHHHc
Q 043794 160 NDP-----------MTNVHSVVNQG-FGATIQRINGALECGGKQPDKVQARIGYYTDYCNKF 209 (219)
Q Consensus 160 ~~~-----------~~~~~~~ad~g-f~~~t~~INGglEc~~~~~~g~~~R~~~y~~~~~~l 209 (219)
.++ .++|+.++|+| +..||++||||+ ||++||.+.|+++..++
T Consensus 150 ~~~~~a~~a~wyw~~~g~n~~aD~gd~~~VT~~INGG~-------NG~~dR~~r~~~a~~v~ 204 (206)
T COG3179 150 LDPHAARVAAWYWKTRGLNALADEGDLVRVTRKINGGL-------NGLDDRLARYRRASGVL 204 (206)
T ss_pred cChHhhhhHHHHHHhccHHHhhccCChhhhhhhhcCcc-------ccHHHHHHHHHHHhccc
Confidence 987 26899999887 999999999996 99999999999987654
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=98.97 E-value=1.4e-10 Score=88.97 Aligned_cols=67 Identities=22% Similarity=0.146 Sum_probs=58.7
Q ss_pred HHhhhhccccCCCceehhccCCCCCCccCCCCCCcCCCCCccccCcccccccchhHHHHHHHhCCCCCCCccccccCC
Q 043794 85 AAFFAHVTHETGHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDP 162 (219)
Q Consensus 85 A~FLAq~~hETg~f~~~~E~~~~~~Y~~~~n~~y~~gDG~~YrGRG~iQLTg~~NY~~~g~~lg~Dll~nPdlva~~~ 162 (219)
|.|.++..||+.+++..++. .|| +|..|..|+|||++|+||++||...++.+++|++++|++++.++
T Consensus 1 a~~~~i~~~E~~~~~~~~~~----Gy~-------~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (105)
T cd00442 1 AIIDMLASSEGTDLKAYKDR----GHG-------TLNPGERGYGIGLYQLTSRWSDAYRARGIGLKLLAQLILKLFNP 67 (105)
T ss_pred ChhhhhhhcccCCCcccccC----CCC-------CCCCCCcccccCceeeeeccCccccccccCcchhcCcchhccCc
Confidence 57899999999999877763 265 56667889999999999999999999999999999999999886
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.91 E-value=6.9 Score=29.81 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhhhhcccc
Q 043794 14 LLFGIFTLAIPTIVVSQVA 32 (219)
Q Consensus 14 ~~~~~~~~~~~~~~~~~v~ 32 (219)
+++|+|+||+++.||..|+
T Consensus 6 ~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 6666666777666665443
No 7
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=46.36 E-value=16 Score=26.25 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=17.8
Q ss_pred ccccCCCCHHHHHhccccCC
Q 043794 29 SQVANLVTPEFFDGIKNVAD 48 (219)
Q Consensus 29 ~~v~~~iT~~~f~~i~p~~~ 48 (219)
+.+.++||.++|.++||.+-
T Consensus 14 s~L~~iisl~qF~~LFPr~~ 33 (67)
T PF09447_consen 14 SSLPDIISLEQFRKLFPRRL 33 (67)
T ss_pred CccccccCHHHHHHHccccC
Confidence 47999999999999999854
No 8
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=33.98 E-value=26 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=28.4
Q ss_pred cCCCCHHHHHhccccCCC---------CCCCCCcccHHHHHHHHhccc
Q 043794 32 ANLVTPEFFDGIKNVADP---------SSPGKSFYTRDAFLNAANSYP 70 (219)
Q Consensus 32 ~~~iT~~~f~~i~p~~~~---------~~~~~~~yt~~~f~~a~n~~~ 70 (219)
.++||+++.+.|-..... -.|.+|...+..|++|+..||
T Consensus 33 ~gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~ 80 (94)
T cd08327 33 EGILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFP 80 (94)
T ss_pred CCCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 349999999999865321 246677777888888887654
No 9
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=29.79 E-value=70 Score=24.66 Aligned_cols=31 Identities=23% Similarity=0.135 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhhhhcccc-----------CCCCHHHHHhccc
Q 043794 15 LFGIFTLAIPTIVVSQVA-----------NLVTPEFFDGIKN 45 (219)
Q Consensus 15 ~~~~~~~~~~~~~~~~v~-----------~~iT~~~f~~i~p 45 (219)
+++++++++.++.|+... .+++++++++|-+
T Consensus 7 ~~~~~~~~~~LsgCs~~~~~~y~~~v~qG~~~~~~~l~~l~~ 48 (113)
T PRK11548 7 TAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPNDVAKIHV 48 (113)
T ss_pred HHHHHHHHHHHcccCCCCcccccccCCccccCCHHHHHHhcC
Confidence 344444444555665332 2566666666654
No 10
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=28.02 E-value=2e+02 Score=23.47 Aligned_cols=36 Identities=11% Similarity=0.009 Sum_probs=21.7
Q ss_pred ccCCCCHHHHHhccccCCCCCCCCCcccHHHHHHHHhc
Q 043794 31 VANLVTPEFFDGIKNVADPSSPGKSFYTRDAFLNAANS 68 (219)
Q Consensus 31 v~~~iT~~~f~~i~p~~~~~~~~~~~yt~~~f~~a~n~ 68 (219)
|...=+.++++++||..+ |..=++-+=..|.+++.+
T Consensus 29 ve~~p~~~~i~~~lP~~n--Cg~Cg~~~c~~~a~av~~ 64 (165)
T TIGR01944 29 VEADPIVEEIDALLPQTQ--CGQCGYPGCRPYAEAIAE 64 (165)
T ss_pred ccCCChHHHHHHhCCCCC--CccCCCCChHHHHHHHHc
Confidence 333335699999999865 333332234577777754
No 11
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=24.11 E-value=2.2e+02 Score=24.01 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=23.4
Q ss_pred cccCCCCHHHHHhccccCCCCCCCCCcccHHHHHHHHhc
Q 043794 30 QVANLVTPEFFDGIKNVADPSSPGKSFYTRDAFLNAANS 68 (219)
Q Consensus 30 ~v~~~iT~~~f~~i~p~~~~~~~~~~~yt~~~f~~a~n~ 68 (219)
.|+..=+.++++++||..+ |.+=++-+=..|.+++..
T Consensus 30 ~ve~dp~~~~l~~~lP~~n--Cg~Cg~~~c~~~a~av~~ 66 (191)
T PRK05113 30 KVEGDPIVEKIDAILPQSQ--CGQCGYPGCRPYAEAIAN 66 (191)
T ss_pred cccCCChHHHHHHhCCcCC--ccccCCCCcHHHHHHHhC
Confidence 3555556799999999876 333232223677777763
No 12
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=23.22 E-value=36 Score=22.63 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=9.7
Q ss_pred HhhhhccccCCCceehhc
Q 043794 86 AFFAHVTHETGHLCYVEE 103 (219)
Q Consensus 86 ~FLAq~~hETg~f~~~~E 103 (219)
.|..++...+.+|..+-|
T Consensus 23 ~F~~~L~~s~D~F~vIae 40 (49)
T PF12451_consen 23 LFFKQLEESEDRFSVIAE 40 (49)
T ss_pred HHHHHHHhCCCCchhHHH
Confidence 455555444455665554
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.98 E-value=64 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=14.5
Q ss_pred CcchHHHHHHHHHHHhhhhhhhc
Q 043794 7 NKDSLTFLLFGIFTLAIPTIVVS 29 (219)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (219)
||.-|.+.++|++.|.+++.|++
T Consensus 3 SK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Confidence 56656666666666666666665
Done!