Query 043797
Match_columns 138
No_of_seqs 115 out of 1744
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.5 1.4E-13 3.1E-18 97.5 8.3 105 19-137 16-134 (160)
2 KOG0027 Calmodulin and related 99.5 1.8E-13 3.9E-18 96.3 8.4 104 20-136 5-126 (151)
3 PF13499 EF-hand_7: EF-hand do 99.4 3.3E-12 7.2E-17 77.5 7.5 66 24-98 1-66 (66)
4 KOG0028 Ca2+-binding protein ( 99.2 2.1E-11 4.7E-16 85.6 6.8 106 19-137 29-148 (172)
5 cd05022 S-100A13 S-100A13: S-1 99.2 1.1E-10 2.4E-15 75.4 8.9 71 22-105 7-80 (89)
6 cd05027 S-100B S-100B: S-100B 99.1 7E-10 1.5E-14 71.6 9.8 75 22-104 7-83 (88)
7 PTZ00183 centrin; Provisional 99.1 2.9E-10 6.4E-15 79.3 8.5 102 20-134 14-129 (158)
8 KOG0030 Myosin essential light 99.1 1.8E-10 3.9E-15 79.3 6.1 105 20-137 8-130 (152)
9 PTZ00184 calmodulin; Provision 99.1 5.6E-10 1.2E-14 76.8 8.5 98 23-133 11-122 (149)
10 cd05026 S-100Z S-100Z: S-100Z 99.1 2.2E-09 4.8E-14 69.8 10.1 75 22-104 9-85 (93)
11 COG5126 FRQ1 Ca2+-binding prot 99.1 6.3E-10 1.4E-14 78.9 7.7 67 20-99 89-155 (160)
12 KOG0031 Myosin regulatory ligh 99.1 1.2E-09 2.7E-14 76.4 8.3 101 18-135 27-141 (171)
13 KOG0027 Calmodulin and related 99.0 1.4E-09 2.9E-14 76.5 8.5 64 23-99 85-148 (151)
14 KOG0036 Predicted mitochondria 99.0 8.5E-10 1.8E-14 87.7 7.3 112 15-138 6-125 (463)
15 cd05025 S-100A1 S-100A1: S-100 99.0 5.4E-09 1.2E-13 67.6 9.6 74 23-105 9-85 (92)
16 cd05029 S-100A6 S-100A6: S-100 99.0 6.3E-09 1.4E-13 67.1 9.5 73 23-105 10-84 (88)
17 cd05031 S-100A10_like S-100A10 99.0 5.1E-09 1.1E-13 68.1 8.8 72 22-101 7-80 (94)
18 smart00027 EH Eps15 homology d 99.0 9.9E-09 2.1E-13 66.9 9.4 71 20-105 7-77 (96)
19 cd00052 EH Eps15 homology doma 99.0 6.5E-09 1.4E-13 62.7 7.8 63 26-103 2-64 (67)
20 cd00213 S-100 S-100: S-100 dom 98.9 1.2E-08 2.6E-13 65.3 9.1 76 19-103 4-82 (88)
21 KOG0034 Ca2+/calmodulin-depend 98.9 6.4E-09 1.4E-13 75.8 8.6 70 23-100 104-175 (187)
22 cd05023 S-100A11 S-100A11: S-1 98.8 7.1E-08 1.5E-12 62.3 10.1 75 22-104 8-84 (89)
23 KOG0044 Ca2+ sensor (EF-Hand s 98.8 4E-08 8.6E-13 71.8 8.8 103 4-119 42-171 (193)
24 PF13833 EF-hand_8: EF-hand do 98.8 2.6E-08 5.6E-13 58.0 6.4 52 36-100 1-53 (54)
25 cd00051 EFh EF-hand, calcium b 98.8 5.6E-08 1.2E-12 56.4 7.5 61 25-98 2-62 (63)
26 KOG0037 Ca2+-binding protein, 98.7 8.6E-08 1.9E-12 70.7 8.9 81 21-114 122-209 (221)
27 cd00252 SPARC_EC SPARC_EC; ext 98.7 8.6E-08 1.9E-12 64.8 8.0 63 19-98 44-106 (116)
28 PTZ00183 centrin; Provisional 98.7 1.7E-07 3.7E-12 65.2 9.2 103 5-119 33-150 (158)
29 PTZ00184 calmodulin; Provision 98.7 2E-07 4.3E-12 64.0 8.9 103 5-119 27-144 (149)
30 KOG0041 Predicted Ca2+-binding 98.7 1.6E-07 3.5E-12 68.6 8.2 82 4-100 82-163 (244)
31 PF14658 EF-hand_9: EF-hand do 98.6 1.9E-07 4.1E-12 56.8 6.7 62 27-101 2-65 (66)
32 cd05030 calgranulins Calgranul 98.6 4E-07 8.6E-12 58.6 8.6 70 23-104 8-83 (88)
33 KOG0044 Ca2+ sensor (EF-Hand s 98.6 4.7E-07 1E-11 66.3 9.2 108 5-124 8-129 (193)
34 KOG0028 Ca2+-binding protein ( 98.6 3.6E-07 7.7E-12 64.5 7.6 65 22-99 105-169 (172)
35 KOG0377 Protein serine/threoni 98.6 1.8E-07 3.8E-12 75.5 6.8 118 2-123 443-615 (631)
36 cd05024 S-100A10 S-100A10: A s 98.5 4.7E-06 1E-10 54.0 10.4 74 23-105 8-81 (91)
37 PLN02964 phosphatidylserine de 98.4 2.1E-06 4.7E-11 72.7 10.0 89 21-123 141-243 (644)
38 KOG0038 Ca2+-binding kinase in 98.4 1.9E-06 4E-11 60.3 8.0 80 13-100 98-177 (189)
39 PF00036 EF-hand_1: EF hand; 98.4 4.6E-07 9.9E-12 46.5 3.3 29 24-52 1-29 (29)
40 KOG0037 Ca2+-binding protein, 98.4 1.2E-06 2.5E-11 64.8 6.4 97 23-131 57-160 (221)
41 KOG0377 Protein serine/threoni 98.2 7.7E-06 1.7E-10 66.2 8.6 78 13-99 537-614 (631)
42 KOG4223 Reticulocalbin, calume 98.2 7.3E-06 1.6E-10 63.7 8.0 110 4-119 92-224 (325)
43 PLN02964 phosphatidylserine de 98.2 9.9E-06 2.2E-10 68.8 9.1 65 24-101 180-244 (644)
44 KOG0031 Myosin regulatory ligh 98.2 1.1E-05 2.5E-10 56.7 7.9 65 22-99 100-164 (171)
45 KOG0030 Myosin essential light 98.1 1.7E-05 3.7E-10 54.9 7.5 83 1-98 61-149 (152)
46 KOG0034 Ca2+/calmodulin-depend 98.1 3.5E-05 7.6E-10 56.2 9.1 84 23-119 66-171 (187)
47 PF13405 EF-hand_6: EF-hand do 98.1 6E-06 1.3E-10 42.7 3.3 29 24-52 1-30 (31)
48 PF00036 EF-hand_1: EF hand; 98.1 5E-06 1.1E-10 42.6 2.9 25 76-100 4-28 (29)
49 KOG4223 Reticulocalbin, calume 97.9 8.6E-05 1.9E-09 57.8 8.4 87 21-119 161-265 (325)
50 PF13202 EF-hand_5: EF hand; P 97.9 1.6E-05 3.5E-10 39.2 2.9 25 25-49 1-25 (25)
51 PF12763 EF-hand_4: Cytoskelet 97.8 0.0002 4.3E-09 47.5 8.0 65 23-103 10-74 (104)
52 KOG0036 Predicted mitochondria 97.7 0.00018 3.9E-09 57.8 8.2 80 4-99 66-145 (463)
53 PRK12309 transaldolase/EF-hand 97.7 0.00019 4.1E-09 57.9 7.8 60 17-102 328-387 (391)
54 KOG4065 Uncharacterized conser 97.7 0.00041 8.9E-09 46.8 7.9 91 6-97 44-142 (144)
55 PF14788 EF-hand_10: EF hand; 97.6 0.00036 7.8E-09 40.2 5.4 50 39-101 1-50 (51)
56 PF13499 EF-hand_7: EF-hand do 97.5 0.00026 5.7E-09 42.3 4.7 45 75-119 3-64 (66)
57 PF13202 EF-hand_5: EF hand; P 97.4 0.0002 4.4E-09 35.2 2.9 23 76-98 3-25 (25)
58 PF13833 EF-hand_8: EF-hand do 97.2 0.00047 1E-08 39.7 3.4 48 4-51 3-53 (54)
59 smart00027 EH Eps15 homology d 97.2 0.0035 7.6E-08 40.5 7.7 68 63-131 2-80 (96)
60 PF13405 EF-hand_6: EF-hand do 97.1 0.00078 1.7E-08 34.6 2.9 24 76-99 4-27 (31)
61 KOG0040 Ca2+-binding actin-bun 97.0 0.002 4.4E-08 58.9 6.9 84 21-117 2251-2355(2399)
62 PF10591 SPARC_Ca_bdg: Secrete 96.9 0.00032 6.9E-09 47.2 1.0 61 21-96 52-112 (113)
63 cd00252 SPARC_EC SPARC_EC; ext 96.8 0.0034 7.3E-08 42.4 5.3 47 73-119 49-104 (116)
64 KOG2643 Ca2+ binding protein, 96.8 0.0041 8.9E-08 50.5 6.2 113 4-119 214-342 (489)
65 smart00054 EFh EF-hand, calciu 96.8 0.0016 3.5E-08 31.2 2.6 27 25-51 2-28 (29)
66 KOG4251 Calcium binding protei 96.7 0.0044 9.6E-08 47.1 5.6 99 23-121 140-307 (362)
67 KOG0038 Ca2+-binding kinase in 96.7 0.0054 1.2E-07 43.2 5.6 84 21-119 72-173 (189)
68 cd05022 S-100A13 S-100A13: S-1 96.7 0.0052 1.1E-07 39.6 5.1 48 5-52 25-76 (89)
69 KOG0046 Ca2+-binding actin-bun 96.6 0.011 2.5E-07 49.0 7.6 68 23-102 19-87 (627)
70 PRK12309 transaldolase/EF-hand 96.4 0.024 5.3E-07 45.9 8.6 45 76-121 338-383 (391)
71 KOG4251 Calcium binding protei 96.3 0.0041 8.9E-08 47.3 3.4 66 22-97 100-165 (362)
72 KOG2562 Protein phosphatase 2 96.1 0.026 5.6E-07 46.3 7.0 81 24-120 279-376 (493)
73 cd05030 calgranulins Calgranul 96.1 0.022 4.8E-07 36.3 5.5 49 4-52 25-80 (88)
74 smart00054 EFh EF-hand, calciu 96.0 0.015 3.3E-07 27.5 3.5 25 76-100 4-28 (29)
75 KOG0751 Mitochondrial aspartat 95.9 0.056 1.2E-06 45.0 8.3 91 20-120 105-204 (694)
76 cd00052 EH Eps15 homology doma 95.9 0.014 2.9E-07 34.5 3.7 48 5-52 15-62 (67)
77 cd05023 S-100A11 S-100A11: S-1 95.9 0.017 3.7E-07 37.1 4.3 48 5-52 27-81 (89)
78 cd00213 S-100 S-100: S-100 dom 95.9 0.058 1.3E-06 34.0 6.7 52 74-125 10-81 (88)
79 PF12763 EF-hand_4: Cytoskelet 95.6 0.013 2.9E-07 38.8 3.0 49 4-52 24-72 (104)
80 cd05025 S-100A1 S-100A1: S-100 95.5 0.077 1.7E-06 33.8 6.3 47 6-52 28-81 (92)
81 cd00051 EFh EF-hand, calcium b 95.5 0.05 1.1E-06 30.6 4.9 43 76-118 4-59 (63)
82 cd05029 S-100A6 S-100A6: S-100 95.4 0.028 6.1E-07 35.9 3.9 49 4-52 27-80 (88)
83 cd05026 S-100Z S-100Z: S-100Z 95.3 0.063 1.4E-06 34.6 5.2 47 6-52 29-82 (93)
84 cd05027 S-100B S-100B: S-100B 95.2 0.048 1E-06 34.9 4.4 48 5-52 26-80 (88)
85 cd05031 S-100A10_like S-100A10 95.2 0.055 1.2E-06 34.7 4.8 49 4-52 25-80 (94)
86 cd05024 S-100A10 S-100A10: A s 95.1 0.06 1.3E-06 34.8 4.8 47 6-52 24-77 (91)
87 PF09279 EF-hand_like: Phospho 95.1 0.12 2.6E-06 32.2 6.1 64 24-99 1-68 (83)
88 PF14788 EF-hand_10: EF hand; 95.0 0.056 1.2E-06 31.2 3.9 30 23-52 21-50 (51)
89 KOG2643 Ca2+ binding protein, 94.4 0.62 1.3E-05 38.3 9.7 76 12-98 306-382 (489)
90 KOG1955 Ral-GTPase effector RA 93.7 0.27 5.8E-06 41.1 6.6 66 19-99 227-292 (737)
91 KOG3866 DNA-binding protein of 93.1 0.28 6E-06 38.7 5.5 70 27-99 248-323 (442)
92 PF05517 p25-alpha: p25-alpha 93.0 0.92 2E-05 32.0 7.8 69 26-105 5-74 (154)
93 KOG2562 Protein phosphatase 2 93.0 0.71 1.5E-05 38.1 7.9 81 6-100 295-379 (493)
94 KOG1029 Endocytic adaptor prot 92.6 0.33 7.2E-06 42.5 5.8 62 23-99 195-256 (1118)
95 KOG2243 Ca2+ release channel ( 92.2 0.32 6.9E-06 45.4 5.4 60 27-100 4061-4120(5019)
96 KOG4578 Uncharacterized conser 91.6 0.081 1.8E-06 41.9 1.0 65 23-99 333-397 (421)
97 PF05042 Caleosin: Caleosin re 91.2 1.5 3.2E-05 31.7 7.1 50 75-124 99-169 (174)
98 PF14658 EF-hand_9: EF-hand do 91.2 0.57 1.2E-05 28.4 4.2 49 3-51 12-64 (66)
99 KOG0042 Glycerol-3-phosphate d 90.0 0.82 1.8E-05 38.9 5.5 69 23-104 593-661 (680)
100 KOG4666 Predicted phosphate ac 90.0 0.5 1.1E-05 37.5 4.0 65 23-99 259-323 (412)
101 KOG0041 Predicted Ca2+-binding 89.8 1.1 2.3E-05 33.4 5.4 54 65-119 93-159 (244)
102 KOG0169 Phosphoinositide-speci 89.8 1.8 3.8E-05 37.8 7.5 87 20-119 133-228 (746)
103 PF10591 SPARC_Ca_bdg: Secrete 89.2 0.11 2.4E-06 34.8 -0.0 44 4-47 69-112 (113)
104 KOG3555 Ca2+-binding proteogly 88.7 0.81 1.8E-05 36.6 4.4 59 23-98 250-308 (434)
105 PF09069 EF-hand_3: EF-hand; 88.6 4.8 0.0001 25.9 7.4 72 23-99 3-74 (90)
106 KOG0035 Ca2+-binding actin-bun 86.2 3.8 8.1E-05 36.7 7.4 92 19-119 743-848 (890)
107 KOG1707 Predicted Ras related/ 85.1 7.6 0.00016 33.3 8.4 30 21-50 193-222 (625)
108 KOG0751 Mitochondrial aspartat 85.0 3 6.5E-05 35.1 5.9 64 21-99 71-135 (694)
109 PF05042 Caleosin: Caleosin re 84.0 3.9 8.5E-05 29.5 5.5 70 23-99 96-165 (174)
110 KOG1707 Predicted Ras related/ 82.4 1.5 3.3E-05 37.4 3.3 70 15-99 307-376 (625)
111 PF08414 NADPH_Ox: Respiratory 79.6 13 0.00029 24.3 6.3 64 23-101 30-93 (100)
112 KOG4666 Predicted phosphate ac 77.8 5.7 0.00012 31.8 4.9 62 25-100 298-359 (412)
113 KOG4065 Uncharacterized conser 77.6 3.2 7E-05 28.2 3.1 33 15-47 109-141 (144)
114 KOG3555 Ca2+-binding proteogly 74.7 3.4 7.4E-05 33.2 3.0 86 21-116 209-303 (434)
115 KOG0040 Ca2+-binding actin-bun 72.9 12 0.00027 35.8 6.4 65 24-100 2297-2361(2399)
116 KOG1955 Ral-GTPase effector RA 72.5 3.6 7.9E-05 34.6 2.8 49 4-52 246-294 (737)
117 PF09373 PMBR: Pseudomurein-bi 72.2 7.3 0.00016 20.0 3.0 28 85-113 1-28 (33)
118 PF09068 EF-hand_2: EF hand; 71.7 29 0.00062 23.6 7.4 73 24-98 42-123 (127)
119 COG4103 Uncharacterized protei 67.5 25 0.00054 24.7 5.7 67 19-99 27-93 (148)
120 KOG4347 GTPase-activating prot 66.4 8.3 0.00018 33.4 3.7 58 23-94 555-612 (671)
121 KOG2871 Uncharacterized conser 65.7 5.6 0.00012 32.3 2.5 64 22-97 308-371 (449)
122 PF08726 EFhand_Ca_insen: Ca2+ 61.1 11 0.00023 23.1 2.6 26 23-49 6-31 (69)
123 KOG1029 Endocytic adaptor prot 61.0 52 0.0011 29.6 7.5 61 27-103 20-80 (1118)
124 cd07313 terB_like_2 tellurium 58.0 46 0.00099 21.1 6.4 71 36-117 12-94 (104)
125 TIGR02675 tape_meas_nterm tape 53.8 34 0.00073 21.0 4.1 17 36-52 27-43 (75)
126 PF00404 Dockerin_1: Dockerin 53.3 24 0.00051 16.4 2.7 17 33-49 1-17 (21)
127 PLN02230 phosphoinositide phos 52.6 1.2E+02 0.0025 26.4 8.3 70 23-99 29-101 (598)
128 KOG3442 Uncharacterized conser 51.0 56 0.0012 22.4 5.0 43 36-88 52-94 (132)
129 KOG0998 Synaptic vesicle prote 49.9 8.3 0.00018 34.5 1.2 65 23-102 283-347 (847)
130 PF09068 EF-hand_2: EF hand; 49.6 20 0.00043 24.4 2.7 28 24-51 98-125 (127)
131 PLN02952 phosphoinositide phos 48.6 76 0.0016 27.5 6.6 53 36-100 13-65 (599)
132 PLN02952 phosphoinositide phos 48.3 1.7E+02 0.0036 25.5 8.6 69 23-99 38-109 (599)
133 PLN02223 phosphoinositide phos 47.4 1.3E+02 0.0028 25.8 7.7 72 23-99 16-91 (537)
134 KOG0039 Ferric reductase, NADH 46.5 67 0.0015 28.0 6.1 79 16-100 11-89 (646)
135 PF14513 DAG_kinase_N: Diacylg 45.5 52 0.0011 22.9 4.3 49 37-100 5-60 (138)
136 KOG4578 Uncharacterized conser 45.2 22 0.00047 28.6 2.7 47 5-51 349-398 (421)
137 PF05872 DUF853: Bacterial pro 44.4 1.7E+02 0.0036 24.8 7.7 64 11-77 116-183 (502)
138 PLN02228 Phosphoinositide phos 43.7 1.2E+02 0.0027 26.1 7.1 64 23-100 24-92 (567)
139 KOG2243 Ca2+ release channel ( 43.7 1.9E+02 0.0042 28.6 8.4 22 78-99 4063-4084(5019)
140 PRK04387 hypothetical protein; 41.6 68 0.0015 20.6 4.1 56 63-119 9-77 (90)
141 PRK00523 hypothetical protein; 40.9 78 0.0017 19.5 4.1 29 39-76 39-67 (72)
142 PF03672 UPF0154: Uncharacteri 40.5 82 0.0018 18.9 4.2 30 38-76 30-59 (64)
143 KOG3866 DNA-binding protein of 40.2 99 0.0021 24.8 5.6 28 78-105 250-277 (442)
144 PLN02222 phosphoinositide phos 39.6 1.7E+02 0.0036 25.4 7.3 65 23-100 25-90 (581)
145 cd07909 YciF YciF bacterial st 38.7 56 0.0012 22.9 3.7 32 9-40 36-67 (147)
146 PTZ00100 DnaJ chaperone protei 38.5 1.2E+02 0.0027 20.4 6.8 28 60-87 72-99 (116)
147 KOG0998 Synaptic vesicle prote 37.7 28 0.0006 31.3 2.5 67 23-104 11-77 (847)
148 KOG0506 Glutaminase (contains 36.4 1.6E+02 0.0035 25.1 6.4 81 28-118 91-180 (622)
149 PF09336 Vps4_C: Vps4 C termin 34.8 87 0.0019 18.4 3.6 25 39-72 29-53 (62)
150 KOG4004 Matricellular protein 34.4 23 0.0005 26.4 1.3 27 23-49 222-248 (259)
151 PF08976 DUF1880: Domain of un 34.0 44 0.00095 22.6 2.4 31 65-99 4-34 (118)
152 PF01023 S_100: S-100/ICaBP ty 33.1 88 0.0019 17.1 3.6 29 23-51 6-36 (44)
153 PRK01844 hypothetical protein; 33.0 1.2E+02 0.0026 18.7 4.1 30 39-77 38-67 (72)
154 COG5533 UBP5 Ubiquitin C-termi 31.8 2E+02 0.0044 23.2 6.1 94 35-135 116-210 (415)
155 COG3763 Uncharacterized protei 31.6 1.3E+02 0.0028 18.5 5.3 42 27-78 27-68 (71)
156 PF07879 PHB_acc_N: PHB/PHA ac 30.8 44 0.00095 20.1 1.8 22 30-51 10-31 (64)
157 smart00549 TAFH TAF homology. 30.5 1.5E+02 0.0033 19.1 5.1 49 43-100 3-51 (92)
158 PF12486 DUF3702: ImpA domain 30.1 2E+02 0.0043 20.2 5.3 42 23-69 69-110 (148)
159 PF03979 Sigma70_r1_1: Sigma-7 28.6 92 0.002 19.2 3.2 29 36-75 18-46 (82)
160 PF02761 Cbl_N2: CBL proto-onc 28.0 1.7E+02 0.0036 18.7 5.5 50 37-99 20-69 (85)
161 PF12174 RST: RCD1-SRO-TAF4 (R 27.9 82 0.0018 19.2 2.7 18 85-102 38-55 (70)
162 PF05256 UPF0223: Uncharacteri 27.9 1E+02 0.0023 19.7 3.3 56 63-119 9-77 (88)
163 PF12987 DUF3871: Domain of un 27.6 2.8E+02 0.006 22.1 6.2 84 17-100 186-285 (323)
164 KOG2301 Voltage-gated Ca2+ cha 27.6 43 0.00092 32.4 2.0 67 23-99 1417-1483(1592)
165 KOG1954 Endocytosis/signaling 27.0 1.1E+02 0.0024 25.4 4.0 45 37-96 457-501 (532)
166 TIGR01639 P_fal_TIGR01639 Plas 26.9 1.4E+02 0.003 17.4 4.4 28 39-75 9-36 (61)
167 PF02864 STAT_bind: STAT prote 26.9 1.4E+02 0.003 23.0 4.4 56 37-96 176-231 (254)
168 PF00226 DnaJ: DnaJ domain; I 26.9 1.3E+02 0.0028 17.0 6.2 32 59-90 6-37 (64)
169 KOG4347 GTPase-activating prot 23.8 1.9E+02 0.0041 25.4 5.0 28 73-100 556-583 (671)
170 PF02037 SAP: SAP domain; Int 23.3 1.2E+02 0.0026 15.5 4.2 27 39-72 3-29 (35)
171 PF04963 Sigma54_CBD: Sigma-54 22.1 1.8E+02 0.004 21.0 4.2 50 34-96 45-94 (194)
172 TIGR01848 PHA_reg_PhaR polyhyd 21.8 2.5E+02 0.0055 18.6 4.8 22 30-51 10-31 (107)
173 COG1508 RpoN DNA-directed RNA 21.4 2.5E+02 0.0053 23.5 5.1 52 34-97 120-171 (444)
174 PF05974 DUF892: Domain of unk 21.0 1.6E+02 0.0035 20.6 3.6 31 9-39 38-68 (159)
175 PF07308 DUF1456: Protein of u 20.5 2.1E+02 0.0046 17.2 5.8 45 41-98 15-59 (68)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.49 E-value=1.4e-13 Score=97.49 Aligned_cols=105 Identities=27% Similarity=0.401 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 19 YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
....++++..|..+|++++|.|+..++..+++.+ | ..++.+++.+ ++..+|. +.+.|+|.+|+.+|
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~l-------g--~~~s~~ei~~----l~~~~d~-~~~~idf~~Fl~~m 81 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSL-------G--FNPSEAEINK----LFEEIDA-GNETVDFPEFLTVM 81 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc-------C--CCCcHHHHHH----HHHhccC-CCCccCHHHHHHHH
Confidence 5667899999999999999999999999999987 8 8899999887 6779998 99999999999998
Q ss_pred H----------HHHHHH----hccCCCcchhhhhhcchHHHHHhhcccccccc
Q 043797 99 K----------QMMLAV----ANGLGFLPVQMVLEEDSILKKVVEKESTAKVV 137 (138)
Q Consensus 99 ~----------~~~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (138)
. ++.++| .+++|+|++.+++...+.++..++.++.++++
T Consensus 82 s~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll 134 (160)
T COG5126 82 SVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLL 134 (160)
T ss_pred HHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHH
Confidence 5 366666 88999999999999999999999999888765
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=1.8e-13 Score=96.26 Aligned_cols=104 Identities=28% Similarity=0.454 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 20 AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 20 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
.....+..+|+.+|++++|+|+..++..+++.+ | .+++..++.. ++...|.+++|.|++++|..++.
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-------g--~~~t~~el~~----~~~~~D~dg~g~I~~~eF~~l~~ 71 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSL-------G--QNPTEEELRD----LIKEIDLDGDGTIDFEEFLDLME 71 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-------C--CCCCHHHHHH----HHHHhCCCCCCeEcHHHHHHHHH
Confidence 345688999999999999999999999999998 8 8899999887 77799999999999999999976
Q ss_pred --------------HHHHHH----hccCCCcchhhhhhcchHHHHHhhccccccc
Q 043797 100 --------------QMMLAV----ANGLGFLPVQMVLEEDSILKKVVEKESTAKV 136 (138)
Q Consensus 100 --------------~~~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 136 (138)
.+..+| ++|+|+|+..+++..-..++..++.++.+.+
T Consensus 72 ~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~m 126 (151)
T KOG0027|consen 72 KLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEM 126 (151)
T ss_pred hhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHH
Confidence 345555 8899999999999988888887776665544
No 3
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.37 E-value=3.3e-12 Score=77.54 Aligned_cols=66 Identities=30% Similarity=0.592 Sum_probs=58.8
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 24 LIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 24 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
.++.+|+.+|++++|+|+.+|+..++..+ + ...++.++...+..+|+.+|.+++|.|+++||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-------G--RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-------T--SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-------c--ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36789999999999999999999999987 6 555677888887888999999999999999999875
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.1e-11 Score=85.64 Aligned_cols=106 Identities=19% Similarity=0.351 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 19 YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
.+..+.++..|..||++++|+|...||..+++++ | ..+...++.+ ++..+|.++.|.|+|++|...+
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmral-------G--FE~~k~ei~k----ll~d~dk~~~g~i~fe~f~~~m 95 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRAL-------G--FEPKKEEILK----LLADVDKEGSGKITFEDFRRVM 95 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHc-------C--CCcchHHHHH----HHHhhhhccCceechHHHHHHH
Confidence 4555789999999999999999999999999998 8 8889999887 6669999999999999999996
Q ss_pred H----------HHHHHH----hccCCCcchhhhhhcchHHHHHhhcccccccc
Q 043797 99 K----------QMMLAV----ANGLGFLPVQMVLEEDSILKKVVEKESTAKVV 137 (138)
Q Consensus 99 ~----------~~~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (138)
. ++..+| -+++|.|+..+++.--+.|+.++++++++.++
T Consensus 96 t~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMI 148 (172)
T KOG0028|consen 96 TVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMI 148 (172)
T ss_pred HHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHH
Confidence 5 366677 57999999999999999999999999887665
No 5
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.23 E-value=1.1e-10 Score=75.44 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=60.6
Q ss_pred HHHHHHHhhhhcC-CCCCcccHHHHHHHHHh-HHhhhhhhCCCCCCCH-HHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 22 NILIRERFAHLDT-DNDGLLSHSEMMKELKC-LRVFETHFGIDEKPDP-DELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 22 ~~~l~~~F~~~D~-d~~G~Is~~el~~~l~~-~~~~~~~~g~~~~~~~-~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
...+..+|+.||+ +++|+|+.+|++.++.. + | ..++. .++.. +++.+|.|+||.|+|+||..++
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-------g--~~ls~~~~v~~----mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQL-------P--HLLKDVEGLEE----KMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-------h--hhccCHHHHHH----HHHHhCCCCCCCCcHHHHHHHH
Confidence 3578899999999 99999999999999988 6 5 55565 66665 7789999999999999999999
Q ss_pred HHHHHHH
Q 043797 99 KQMMLAV 105 (138)
Q Consensus 99 ~~~~~~~ 105 (138)
..+..+.
T Consensus 74 ~~l~~~~ 80 (89)
T cd05022 74 GELAKAV 80 (89)
T ss_pred HHHHHHH
Confidence 8776554
No 6
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.15 E-value=7e-10 Score=71.56 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=60.9
Q ss_pred HHHHHHHhhhhc-CCCCC-cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 22 NILIRERFAHLD-TDNDG-LLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 22 ~~~l~~~F~~~D-~d~~G-~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
...+..+|+.|| .+++| .|+..|++.+|+.- +....| ..+++.++.. +++.+|.+++|.|+|++|+.++.
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~--~~~~lg--~~~~~~~v~~----~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNE--LSHFLE--EIKEQEVVDK----VMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHH--hHHHhc--CCCCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHH
Confidence 357899999998 79999 59999999999981 111127 7788888887 67799999999999999999987
Q ss_pred HHHHH
Q 043797 100 QMMLA 104 (138)
Q Consensus 100 ~~~~~ 104 (138)
.+..+
T Consensus 79 ~~~~~ 83 (88)
T cd05027 79 MVTTA 83 (88)
T ss_pred HHHHH
Confidence 65543
No 7
>PTZ00183 centrin; Provisional
Probab=99.14 E-value=2.9e-10 Score=79.27 Aligned_cols=102 Identities=24% Similarity=0.417 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 20 AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 20 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
.....+..+|..+|++++|.|+..|+..++..+ | ..++...+.. +|+.+|.+++|.|++.+|..++.
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-------g--~~~~~~~~~~----l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSL-------G--FEPKKEEIKQ----MIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-------C--CCCCHHHHHH----HHHHhCCCCCCcEeHHHHHHHHH
Confidence 334678999999999999999999999999887 7 5566666655 77799999999999999988764
Q ss_pred H----------HHHHH----hccCCCcchhhhhhcchHHHHHhhccccc
Q 043797 100 Q----------MMLAV----ANGLGFLPVQMVLEEDSILKKVVEKESTA 134 (138)
Q Consensus 100 ~----------~~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 134 (138)
. +...| .+++|.|+..++......++..++..++.
T Consensus 81 ~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~ 129 (158)
T PTZ00183 81 KKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQ 129 (158)
T ss_pred HHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 2 22223 68999999999988766665555555443
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.12 E-value=1.8e-10 Score=79.34 Aligned_cols=105 Identities=22% Similarity=0.278 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCC--CCCCccHHHHHHH
Q 043797 20 AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHD--SNGTVDLEEFKAE 97 (138)
Q Consensus 20 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~--~dg~Is~~eF~~~ 97 (138)
....+++.+|..||..+||+|+..++..+++.+ | .+|+++++.+. ...++.+ +-..|+|++|+.+
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-------G--~nPT~aeV~k~----l~~~~~~~~~~~rl~FE~fLpm 74 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-------G--QNPTNAEVLKV----LGQPKRREMNVKRLDFEEFLPM 74 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHh-------c--CCCcHHHHHHH----HcCcccchhhhhhhhHHHHHHH
Confidence 344788999999999999999999999999999 9 99999999984 4477766 4578999999999
Q ss_pred HHHHH------------HHH----hccCCCcchhhhhhcchHHHHHhhcccccccc
Q 043797 98 TKQMM------------LAV----ANGLGFLPVQMVLEEDSILKKVVEKESTAKVV 137 (138)
Q Consensus 98 l~~~~------------~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (138)
++.+. +.+ +.|+|.|+..++|.-.-+++++++.++.+.+|
T Consensus 75 ~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Ll 130 (152)
T KOG0030|consen 75 YQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELL 130 (152)
T ss_pred HHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHH
Confidence 86422 222 88999999999999999999999999887765
No 9
>PTZ00184 calmodulin; Provisional
Probab=99.11 E-value=5.6e-10 Score=76.84 Aligned_cols=98 Identities=27% Similarity=0.454 Sum_probs=76.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH--
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ-- 100 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~-- 100 (138)
..+...|..+|.+++|.|+..++..++..+ | ..++..++.. +|+.+|.+++|.|++++|..++..
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-------~--~~~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~l~~~~ 77 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSL-------G--QNPTEAELQD----MINEVDADGNGTIDFPEFLTLMARKM 77 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-------C--CCCCHHHHHH----HHHhcCcCCCCcCcHHHHHHHHHHhc
Confidence 578899999999999999999999999877 7 5666666654 788999999999999999988753
Q ss_pred --------HHHHH----hccCCCcchhhhhhcchHHHHHhhcccc
Q 043797 101 --------MMLAV----ANGLGFLPVQMVLEEDSILKKVVEKEST 133 (138)
Q Consensus 101 --------~~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 133 (138)
+...| .+++|.++..++....+..+..++.+.+
T Consensus 78 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 122 (149)
T PTZ00184 78 KDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEV 122 (149)
T ss_pred cCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHH
Confidence 22233 6789999999998765554444444433
No 10
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.08 E-value=2.2e-09 Score=69.81 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=58.5
Q ss_pred HHHHHHHhhhhc-CCCCC-cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 22 NILIRERFAHLD-TDNDG-LLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 22 ~~~l~~~F~~~D-~d~~G-~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
...+.++|+.|| +|++| +|+.+|++.++... .+..++ ...++.++.. +++.+|.+++|.|+|+||..++.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~--~~~~~~--~~~~~~~v~~----i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRE--LTDFLS--SQKDPMLVDK----IMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHH--hHHhcc--cccCHHHHHH----HHHHhCCCCCCCCCHHHHHHHHH
Confidence 357888899999 78998 59999999999763 111122 3446667776 77799999999999999999998
Q ss_pred HHHHH
Q 043797 100 QMMLA 104 (138)
Q Consensus 100 ~~~~~ 104 (138)
.+..+
T Consensus 81 ~l~~~ 85 (93)
T cd05026 81 ALTVA 85 (93)
T ss_pred HHHHH
Confidence 76544
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.07 E-value=6.3e-10 Score=78.94 Aligned_cols=67 Identities=37% Similarity=0.631 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 20 AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 20 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
...+++.++|+.||.|++|+|+..++..+++.+ | ...+++++.. +++.++.+++|.|+|++|.+.+.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-------g--e~~~deev~~----ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSL-------G--ERLSDEEVEK----LLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-------c--ccCCHHHHHH----HHHhcCCCCCceEeHHHHHHHHh
Confidence 335789999999999999999999999999988 8 9999999998 67799999999999999998765
No 12
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.05 E-value=1.2e-09 Score=76.41 Aligned_cols=101 Identities=17% Similarity=0.303 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 043797 18 EYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAE 97 (138)
Q Consensus 18 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~ 97 (138)
...++++++..|...|.|+||.|..++++.++.++ | ..+++++++.+++ .+.|.|+|.-|+.+
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-------G--k~~~d~elDaM~~--------Ea~gPINft~FLTm 89 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL-------G--KIASDEELDAMMK--------EAPGPINFTVFLTM 89 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHc-------C--CCCCHHHHHHHHH--------hCCCCeeHHHHHHH
Confidence 35677899999999999999999999999999998 8 8899999998443 46889999999999
Q ss_pred HHH----------HHHHH----hccCCCcchhhhhhcchHHHHHhhcccccc
Q 043797 98 TKQ----------MMLAV----ANGLGFLPVQMVLEEDSILKKVVEKESTAK 135 (138)
Q Consensus 98 l~~----------~~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 135 (138)
+.+ ++.+| .++.|.|+...+++-....+.+.+.++.+.
T Consensus 90 fGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~ 141 (171)
T KOG0031|consen 90 FGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDE 141 (171)
T ss_pred HHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHH
Confidence 853 66666 678999999999997777777777766543
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-09 Score=76.49 Aligned_cols=64 Identities=36% Similarity=0.554 Sum_probs=58.8
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
..+..+|+.||++++|+|+.+|++.+|..+ | ...+.+++.. +++..|.+++|.|+|++|++++.
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~l-------g--~~~~~~e~~~----mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSL-------G--EKLTDEECKE----MIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHh-------C--CcCCHHHHHH----HHHhcCCCCCCeEeHHHHHHHHh
Confidence 489999999999999999999999999998 8 7788888776 77799999999999999999875
No 14
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.02 E-value=8.5e-10 Score=87.67 Aligned_cols=112 Identities=26% Similarity=0.297 Sum_probs=91.9
Q ss_pred HhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHH
Q 043797 15 VEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEF 94 (138)
Q Consensus 15 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF 94 (138)
.+...+-..+++.+|+.+|.+++|.++..++...+.++ .+| ++...... .+|+..|.|.+|.++|+||
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l-------~~~-~~~~~~~~----~l~~~~d~~~dg~vDy~eF 73 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL-------DHP-KPNYEAAK----MLFSAMDANRDGRVDYSEF 73 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc-------CCC-CCchHHHH----HHHHhcccCcCCcccHHHH
Confidence 34445556789999999999999999999999999887 533 33444333 3788999999999999999
Q ss_pred HHHHHH----HHHHH----hccCCCcchhhhhhcchHHHHHhhccccccccC
Q 043797 95 KAETKQ----MMLAV----ANGLGFLPVQMVLEEDSILKKVVEKESTAKVVV 138 (138)
Q Consensus 95 ~~~l~~----~~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (138)
..++.. +...| .+.||.|.+.++.++.++++..|++++++++++
T Consensus 74 ~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e 125 (463)
T KOG0036|consen 74 KRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFE 125 (463)
T ss_pred HHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHH
Confidence 999864 34444 778999999999999999999999999998653
No 15
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.01 E-value=5.4e-09 Score=67.64 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=59.8
Q ss_pred HHHHHHhhhhc-CCCCC-cccHHHHHHHHHh-HHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLD-TDNDG-LLSHSEMMKELKC-LRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D-~d~~G-~Is~~el~~~l~~-~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
..+.++|+.|| .+++| .|+..|++.+++. + +..++ ..+++.++.. +++.+|.+++|.|+|++|+.++.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~l---g~~~~--~~~s~~~v~~----i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTEL---SDFLD--AQKDADAVDK----IMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHH---HHHcc--CCCCHHHHHH----HHHHHCCCCCCcCcHHHHHHHHH
Confidence 57899999997 99999 5999999999975 4 11123 4567777776 77799999999999999999998
Q ss_pred HHHHHH
Q 043797 100 QMMLAV 105 (138)
Q Consensus 100 ~~~~~~ 105 (138)
.+..+.
T Consensus 80 ~~~~~~ 85 (92)
T cd05025 80 ALTVAC 85 (92)
T ss_pred HHHHHH
Confidence 766543
No 16
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.00 E-value=6.3e-09 Score=67.11 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=60.2
Q ss_pred HHHHHHhhhhcC-CC-CCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 23 ILIRERFAHLDT-DN-DGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 23 ~~l~~~F~~~D~-d~-~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
..+-..|..||. ++ +|+|+.+|++.++... ..+| ..++++++.+ +++.+|.+++|.|+|+||+.++.+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~----~~lg--~k~t~~ev~~----m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKE----LTIG--SKLQDAEIAK----LMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHH----HhcC--CCCCHHHHHH----HHHHhcCCCCCCCcHHHHHHHHHH
Confidence 357789999997 66 8999999999999631 0016 7788999887 677999999999999999999988
Q ss_pred HHHHH
Q 043797 101 MMLAV 105 (138)
Q Consensus 101 ~~~~~ 105 (138)
+..+.
T Consensus 80 l~~~~ 84 (88)
T cd05029 80 LALIY 84 (88)
T ss_pred HHHHH
Confidence 77654
No 17
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.99 E-value=5.1e-09 Score=68.07 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhcC-CC-CCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 22 NILIRERFAHLDT-DN-DGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 22 ~~~l~~~F~~~D~-d~-~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
...++.+|+.||. ++ +|.|+..|++.+++.. .+..+| ..++..++.. +++.+|.+++|.|+|++|+.++.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~--~g~~lg--~~~s~~ei~~----~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKE--LSEFLK--NQKDPMAVDK----IMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHH--hHHHhh--ccccHHHHHH----HHHHhCCCCCCcCcHHHHHHHHH
Confidence 3578999999997 87 6999999999999862 122235 5677888776 77799999999999999999987
Q ss_pred HH
Q 043797 100 QM 101 (138)
Q Consensus 100 ~~ 101 (138)
..
T Consensus 79 ~~ 80 (94)
T cd05031 79 GL 80 (94)
T ss_pred HH
Confidence 53
No 18
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.96 E-value=9.9e-09 Score=66.91 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 20 AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 20 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
+....+...|+.+|.+++|.|+.+++..+++.. | ++.+++.. +++.+|.+++|.|++++|+.++.
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~----~~~~ev~~----i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------G----LPQTLLAK----IWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------C----CCHHHHHH----HHHHhcCCCCCCcCHHHHHHHHH
Confidence 345688999999999999999999999999876 5 56677775 77799999999999999999988
Q ss_pred HHHHHH
Q 043797 100 QMMLAV 105 (138)
Q Consensus 100 ~~~~~~ 105 (138)
.+....
T Consensus 72 ~~~~~~ 77 (96)
T smart00027 72 LIYRKL 77 (96)
T ss_pred HHHHHH
Confidence 655443
No 19
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.95 E-value=6.5e-09 Score=62.67 Aligned_cols=63 Identities=33% Similarity=0.433 Sum_probs=53.8
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 043797 26 RERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMML 103 (138)
Q Consensus 26 ~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~~ 103 (138)
+.+|+.+|++++|.|+.+|+..++..+ | .+.+++.. +++.+|.+++|.|++++|+.++..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g----~~~~~~~~----i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------G----LPRSVLAQ----IWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------C----CCHHHHHH----HHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 468999999999999999999999876 6 36666665 777999999999999999999876543
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.94 E-value=1.2e-08 Score=65.31 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhhcC--CCCCcccHHHHHHHHHh-HHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHH
Q 043797 19 YAFNILIRERFAHLDT--DNDGLLSHSEMMKELKC-LRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFK 95 (138)
Q Consensus 19 ~~~~~~l~~~F~~~D~--d~~G~Is~~el~~~l~~-~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~ 95 (138)
+.....+..+|..||+ +++|.|+.+++..+++. + +..++ ..++..++.. +++.+|.+++|.|+|++|+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~---g~~~~--~~~~~~ei~~----i~~~~d~~~~g~I~f~eF~ 74 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETEL---PNFLK--NQKDPEAVDK----IMKDLDVNKDGKVDFQEFL 74 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHh---hhhcc--CCCCHHHHHH----HHHHhccCCCCcCcHHHHH
Confidence 3445678899999999 89999999999999976 3 11111 2345777776 7779999999999999999
Q ss_pred HHHHHHHH
Q 043797 96 AETKQMML 103 (138)
Q Consensus 96 ~~l~~~~~ 103 (138)
.++.....
T Consensus 75 ~~~~~~~~ 82 (88)
T cd00213 75 VLIGKLAV 82 (88)
T ss_pred HHHHHHHH
Confidence 99876543
No 21
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.94 E-value=6.4e-09 Score=75.76 Aligned_cols=70 Identities=29% Similarity=0.509 Sum_probs=62.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCC--HHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPD--PDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~--~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
..++-+|+.||.+++|+|+.+|+.+++..+ +| .+.+ .+.+..+...++..+|.++||+|+++||.+++..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~------~~--~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMM------VG--ENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHH------Hc--cCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 478889999999999999999999999987 24 3444 8888889999999999999999999999999864
No 22
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.84 E-value=7.1e-08 Score=62.31 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=57.4
Q ss_pred HHHHHHHhhh-hcCCCCC-cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 22 NILIRERFAH-LDTDNDG-LLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 22 ~~~l~~~F~~-~D~d~~G-~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
...+..+|+. +|.+++| .|+.+||+.++... +....+ ...++.++.. +++.+|.|++|.|+|+||+.++.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e--~~~~~~--~~~~~~~~~~----ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTE--LASFTK--NQKDPGVLDR----MMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHh--hhHhhc--CCCCHHHHHH----HHHHcCCCCCCcCcHHHHHHHHH
Confidence 3567899999 6788876 99999999999864 111112 3345677776 77799999999999999999988
Q ss_pred HHHHH
Q 043797 100 QMMLA 104 (138)
Q Consensus 100 ~~~~~ 104 (138)
.+..+
T Consensus 80 ~l~~~ 84 (89)
T cd05023 80 GLAVA 84 (89)
T ss_pred HHHHH
Confidence 76544
No 23
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.80 E-value=4e-08 Score=71.85 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=64.6
Q ss_pred eeechhhHHHHHhcHH---HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHh
Q 043797 4 EVLDGATIVSFVEDEY---AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQ 80 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~---~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~ 80 (138)
+.++...++.+...-. .-......+|+.+|.|++|.|+..||..+++.. ..-+.++ -+++.|+.
T Consensus 42 G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~----------~rGt~ee---kl~w~F~l 108 (193)
T KOG0044|consen 42 GRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT----------SRGTLEE---KLKWAFRL 108 (193)
T ss_pred CccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH----------cCCcHHH---Hhhhhhee
Confidence 4555555555554432 223456777888888888888888877776654 1112222 23356888
Q ss_pred hCCCCCCCccHHHHHHHHHHHHHHH------------------------hccCCCcchhhhhh
Q 043797 81 FDHDSNGTVDLEEFKAETKQMMLAV------------------------ANGLGFLPVQMVLE 119 (138)
Q Consensus 81 ~d~~~dg~Is~~eF~~~l~~~~~~~------------------------~~~~g~i~~~~~~~ 119 (138)
+|.+++|.|+++|++.+++.++..+ .++||.+|+++..+
T Consensus 109 yD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~ 171 (193)
T KOG0044|consen 109 YDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIE 171 (193)
T ss_pred ecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHH
Confidence 8888888888888877765433222 56777777777766
No 24
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.80 E-value=2.6e-08 Score=58.01 Aligned_cols=52 Identities=33% Similarity=0.618 Sum_probs=46.1
Q ss_pred CCCcccHHHHHHHHHhHHhhhhhhCCCCC-CCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 36 NDGLLSHSEMMKELKCLRVFETHFGIDEK-PDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 36 ~~G~Is~~el~~~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
.+|.|+.++|+.+++.+ | .. +++.++.. +|..+|.+++|.|+++||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~-------g--~~~~s~~e~~~----l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-------G--IKDLSEEEVDR----LFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-------T--SSSSCHHHHHH----HHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-------C--CCCCCHHHHHH----HHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999776 7 66 88988876 777999999999999999999864
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.78 E-value=5.6e-08 Score=56.42 Aligned_cols=61 Identities=36% Similarity=0.628 Sum_probs=53.2
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 25 IRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 25 l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
+..+|..+|.+++|.|+.+++..++..+ + ...+.+.+.. +|..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-------~--~~~~~~~~~~----~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-------G--EGLSEEEIDE----MIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-------C--CCCCHHHHHH----HHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999887 7 6677777665 7779999999999999998764
No 26
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.74 E-value=8.6e-08 Score=70.65 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 21 FNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 21 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
....++.+|+.||.|++|.|+..||+.++..+ | ..+++.-++. +++++|..++|.|.|++|++.+..
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-------G--y~Lspq~~~~----lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQL-------G--YRLSPQFYNL----LVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHc-------C--cCCCHHHHHH----HHHHhccccCCceeHHHHHHHHHH
Confidence 44678899999999999999999999999998 8 8888887776 677999888999999999999754
Q ss_pred ---HHHHH----hccCCCcch
Q 043797 101 ---MMLAV----ANGLGFLPV 114 (138)
Q Consensus 101 ---~~~~~----~~~~g~i~~ 114 (138)
+.++| .+..|.|++
T Consensus 189 L~~lt~~Fr~~D~~q~G~i~~ 209 (221)
T KOG0037|consen 189 LQRLTEAFRRRDTAQQGSITI 209 (221)
T ss_pred HHHHHHHHHHhccccceeEEE
Confidence 34455 556666654
No 27
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.73 E-value=8.6e-08 Score=64.85 Aligned_cols=63 Identities=27% Similarity=0.367 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 19 YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
+.....+.+.|..+|+|++|.|+.+|+..+. + + +....+. .+|..+|.|+||.||++||...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-------~----~~e~~~~----~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-------D----PNEHCIK----PFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-------c----chHHHHH----HHHHHHCCCCCCCCCHHHHHHHH
Confidence 4455789999999999999999999999765 2 3 2333333 48889999999999999999887
No 28
>PTZ00183 centrin; Provisional
Probab=98.70 E-value=1.7e-07 Score=65.19 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=70.5
Q ss_pred eechhhHHHHHhcHH--HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhC
Q 043797 5 VLDGATIVSFVEDEY--AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFD 82 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~--~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d 82 (138)
-++...++.++...+ .-...+..+|..+|.+++|.|++.++..++... .. ......++. .+|+.+|
T Consensus 33 ~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~------~~--~~~~~~~l~----~~F~~~D 100 (158)
T PTZ00183 33 TIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK------LG--ERDPREEIL----KAFRLFD 100 (158)
T ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH------hc--CCCcHHHHH----HHHHHhC
Confidence 345555655555322 123568899999999999999999998877653 01 223444444 3788999
Q ss_pred CCCCCCccHHHHHHHHH------------HHHHHH-hccCCCcchhhhhh
Q 043797 83 HDSNGTVDLEEFKAETK------------QMMLAV-ANGLGFLPVQMVLE 119 (138)
Q Consensus 83 ~~~dg~Is~~eF~~~l~------------~~~~~~-~~~~g~i~~~~~~~ 119 (138)
.+++|.|+.++|..++. .++..+ .+++|.|+..++..
T Consensus 101 ~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~ 150 (158)
T PTZ00183 101 DDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYR 150 (158)
T ss_pred CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 99999999999988753 233333 56889998887755
No 29
>PTZ00184 calmodulin; Provisional
Probab=98.68 E-value=2e-07 Score=63.99 Aligned_cols=103 Identities=15% Similarity=0.282 Sum_probs=65.2
Q ss_pred eechhhHHHHHhcHH--HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhC
Q 043797 5 VLDGATIVSFVEDEY--AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFD 82 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~--~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d 82 (138)
.++.+.++.++...+ .....+..+|+.+|.+++|.|++++|..++... . +....... +..+|+.+|
T Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~-------~-~~~~~~~~----~~~~F~~~D 94 (149)
T PTZ00184 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK-------M-KDTDSEEE----IKEAFKVFD 94 (149)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh-------c-cCCcHHHH----HHHHHHhhC
Confidence 344555555443221 223567888888888888888888888887653 1 01222222 234788888
Q ss_pred CCCCCCccHHHHHHHH------------HHHHHHH-hccCCCcchhhhhh
Q 043797 83 HDSNGTVDLEEFKAET------------KQMMLAV-ANGLGFLPVQMVLE 119 (138)
Q Consensus 83 ~~~dg~Is~~eF~~~l------------~~~~~~~-~~~~g~i~~~~~~~ 119 (138)
.+++|.|+.++|..++ ..++..+ .+++|.|++.+...
T Consensus 95 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (149)
T PTZ00184 95 RDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (149)
T ss_pred CCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHH
Confidence 8888888888887664 1233333 56788888877654
No 30
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=68.64 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=67.4
Q ss_pred eeechhhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCC
Q 043797 4 EVLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDH 83 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~ 83 (138)
+++|. ...+-+-+...+..+...|+.||.+.||+|+..|++.+|..+ | ..-+.- -+++|++..|-
T Consensus 82 kv~n~--yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-------g--apQTHL----~lK~mikeVde 146 (244)
T KOG0041|consen 82 KVFNV--YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKL-------G--APQTHL----GLKNMIKEVDE 146 (244)
T ss_pred cccch--hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHh-------C--CchhhH----HHHHHHHHhhc
Confidence 44444 566778888899999999999999999999999999999998 7 322333 34458889999
Q ss_pred CCCCCccHHHHHHHHHH
Q 043797 84 DSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 84 ~~dg~Is~~eF~~~l~~ 100 (138)
|.+|.|+|-+|+-+++.
T Consensus 147 d~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 147 DFDGKLSFREFLLIFRK 163 (244)
T ss_pred ccccchhHHHHHHHHHH
Confidence 99999999999888764
No 31
>PF14658 EF-hand_9: EF-hand domain
Probab=98.63 E-value=1.9e-07 Score=56.83 Aligned_cols=62 Identities=24% Similarity=0.492 Sum_probs=55.0
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCC-CCCHHHHHHHHHHHHHhhCCCCC-CCccHHHHHHHHHHH
Q 043797 27 ERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDE-KPDPDELARVYSSLFVQFDHDSN-GTVDLEEFKAETKQM 101 (138)
Q Consensus 27 ~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~-~~~~~e~~~~~~~~~~~~d~~~d-g~Is~~eF~~~l~~~ 101 (138)
..|..||+++.|.|...++...|+++ + . .+++.+++. +.+.+|.++. |.|++++|..+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~-------~--~~~p~e~~Lq~----l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV-------T--GRSPEESELQD----LINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH-------c--CCCCcHHHHHH----HHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 46999999999999999999999998 6 5 788888887 5669999987 999999999999753
No 32
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.63 E-value=4e-07 Score=58.57 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=56.1
Q ss_pred HHHHHHhhhhcCC--CCCcccHHHHHHHHHhHHhhhhhhCCCCCCC----HHHHHHHHHHHHHhhCCCCCCCccHHHHHH
Q 043797 23 ILIRERFAHLDTD--NDGLLSHSEMMKELKCLRVFETHFGIDEKPD----PDELARVYSSLFVQFDHDSNGTVDLEEFKA 96 (138)
Q Consensus 23 ~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~----~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~ 96 (138)
..+-..|..|+.. .+|.|+.+|++.++... +| ..++ +.++.. +|+.+|.+++|.|+|++|+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~------~g--~~~t~~~~~~~v~~----i~~~~D~d~dG~I~f~eF~~ 75 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKE------LP--NFLKKEKNQKAIDK----IFEDLDTNQDGQLSFEEFLV 75 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHH------hh--HhhccCCCHHHHHH----HHHHcCCCCCCcCcHHHHHH
Confidence 5677899999865 47999999999999742 13 3333 777776 77799999999999999999
Q ss_pred HHHHHHHH
Q 043797 97 ETKQMMLA 104 (138)
Q Consensus 97 ~l~~~~~~ 104 (138)
++..+..+
T Consensus 76 ~~~~~~~~ 83 (88)
T cd05030 76 LVIKVGVA 83 (88)
T ss_pred HHHHHHHH
Confidence 99876654
No 33
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.60 E-value=4.7e-07 Score=66.27 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=84.1
Q ss_pred eechhhHHHHHhcHHHHHHHHHHHhhhhcCCC-CCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCC
Q 043797 5 VLDGATIVSFVEDEYAFNILIRERFAHLDTDN-DGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDH 83 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~-~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~ 83 (138)
-+.++.+..|......-..++..+|+.|=.+. .|.++.++++.++..+ . +..++..... .+|+.+|.
T Consensus 8 ~~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~-------f--p~gd~~~y~~---~vF~~fD~ 75 (193)
T KOG0044|consen 8 KLQPESLEQLVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASF-------F--PDGDASKYAE---LVFRTFDK 75 (193)
T ss_pred cCCcHHHHHHHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHH-------C--CCCCHHHHHH---HHHHHhcc
Confidence 34566778888777666688889998887765 8999999999999887 5 4455555444 58999999
Q ss_pred CCCCCccHHHHHHHHHH---------HHHHH----hccCCCcchhhhhhcchHH
Q 043797 84 DSNGTVDLEEFKAETKQ---------MMLAV----ANGLGFLPVQMVLEEDSIL 124 (138)
Q Consensus 84 ~~dg~Is~~eF~~~l~~---------~~~~~----~~~~g~i~~~~~~~~~~~~ 124 (138)
+++|.|+|.||+..+.- +.+.| .+|+|+|+..++.+.-+-.
T Consensus 76 ~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 76 NKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred cCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 99999999999888752 34455 8899999999988744433
No 34
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=3.6e-07 Score=64.54 Aligned_cols=65 Identities=31% Similarity=0.455 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 22 NILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 22 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
..++...|+.+|-+++|.||..+++.+.+.+ | ++++.+++.. ++..+|.+++|.|+.++|..+++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-------g--enltD~El~e----MIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-------G--ENLTDEELME----MIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHh-------C--ccccHHHHHH----HHHHhcccccccccHHHHHHHHh
Confidence 3566777777777777777777777776666 6 7777777665 55577777777777777776664
No 35
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.57 E-value=1.8e-07 Score=75.46 Aligned_cols=118 Identities=19% Similarity=0.283 Sum_probs=89.8
Q ss_pred ceeeechhhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHH-----------
Q 043797 2 SVEVLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDEL----------- 70 (138)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~----------- 70 (138)
++++++.|+++.|.+....+...+...|+.+|++..|+|+...|..++..+ .++|+|+..-.+.+
T Consensus 443 R~~~vEeSAlk~Lrerl~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i----~~L~LPWr~L~~kla~~s~d~~v~Y 518 (631)
T KOG0377|consen 443 RMGIVEESALKELRERLRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENI----TGLNLPWRLLRPKLANGSDDGKVEY 518 (631)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHH----hcCCCcHHHhhhhccCCCcCcceeh
Confidence 478999999999999999999999999999999999999999999999876 33455542211110
Q ss_pred ---------HH------------H------HHHHHHhhCCCCCCCccHHHHHHHHHH----------------HHHHH-h
Q 043797 71 ---------AR------------V------YSSLFVQFDHDSNGTVDLEEFKAETKQ----------------MMLAV-A 106 (138)
Q Consensus 71 ---------~~------------~------~~~~~~~~d~~~dg~Is~~eF~~~l~~----------------~~~~~-~ 106 (138)
.. + +..+|+..|.|++|.|+.+||.+.++- +...+ -
T Consensus 519 ~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~ 598 (631)
T KOG0377|consen 519 KSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDL 598 (631)
T ss_pred HhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhcc
Confidence 00 0 111399999999999999999988752 12222 5
Q ss_pred ccCCCcchhhhhhcchH
Q 043797 107 NGLGFLPVQMVLEEDSI 123 (138)
Q Consensus 107 ~~~g~i~~~~~~~~~~~ 123 (138)
++||.|++.++.+..+-
T Consensus 599 NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 599 NKDGKIDLNEFLEAFRL 615 (631)
T ss_pred CCCCcccHHHHHHHHhh
Confidence 68999999998885443
No 36
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.47 E-value=4.7e-06 Score=53.95 Aligned_cols=74 Identities=15% Similarity=0.317 Sum_probs=56.5
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMM 102 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~ 102 (138)
..+-..|..|- .++|.++..|++.++..- +...++ ..-++..+++ +++.+|.|+||.|+|.||..++..+.
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~E--lp~~l~--~~~d~~~vd~----im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKE--FSEFLK--NQNDPMAVDK----IMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHH--hHHHHc--CCCCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45667888887 446799999999999864 333344 4445666666 77799999999999999999988765
Q ss_pred HHH
Q 043797 103 LAV 105 (138)
Q Consensus 103 ~~~ 105 (138)
.+.
T Consensus 79 ~ac 81 (91)
T cd05024 79 IAC 81 (91)
T ss_pred HHH
Confidence 543
No 37
>PLN02964 phosphatidylserine decarboxylase
Probab=98.42 E-value=2.1e-06 Score=72.71 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCC-CCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 21 FNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDE-KPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 21 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~-~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
...++++.|..+|+|++|++ +..+++.+ | . .++..+.. .+..+|+.+|.+++|.|+++||..++.
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrsl-------G--~~~pte~e~~-fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSC-------S--IEDPVETERS-FARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHh-------C--CCCCCHHHHH-HHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 33678999999999999997 77777776 6 3 55666532 233488899999999999999999876
Q ss_pred H---------HHHHH----hccCCCcchhhhhhcchH
Q 043797 100 Q---------MMLAV----ANGLGFLPVQMVLEEDSI 123 (138)
Q Consensus 100 ~---------~~~~~----~~~~g~i~~~~~~~~~~~ 123 (138)
. +..+| .+++|+|+..+++..-..
T Consensus 207 ~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 207 AFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3 34444 789999999999874433
No 38
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.42 E-value=1.9e-06 Score=60.29 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=66.0
Q ss_pred HHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHH
Q 043797 13 SFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLE 92 (138)
Q Consensus 13 ~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~ 92 (138)
+++...-...-.+.-+|+.||-|++++|...++...+.+++ . ..++++++..++..++...|.+|||.+++.
T Consensus 98 SV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT------r--~eLs~eEv~~i~ekvieEAD~DgDgkl~~~ 169 (189)
T KOG0038|consen 98 SVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT------R--DELSDEEVELICEKVIEEADLDGDGKLSFA 169 (189)
T ss_pred HHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh------h--ccCCHHHHHHHHHHHHHHhcCCCCCcccHH
Confidence 33333333444667789999999999999999999998872 2 457899999999999999999999999999
Q ss_pred HHHHHHHH
Q 043797 93 EFKAETKQ 100 (138)
Q Consensus 93 eF~~~l~~ 100 (138)
+|..++.+
T Consensus 170 eFe~~i~r 177 (189)
T KOG0038|consen 170 EFEHVILR 177 (189)
T ss_pred HHHHHHHh
Confidence 99998764
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.38 E-value=4.6e-07 Score=46.50 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=26.1
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 24 LIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 24 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
+++.+|+.+|+|++|+|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46799999999999999999999998763
No 40
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.37 E-value=1.2e-06 Score=64.76 Aligned_cols=97 Identities=22% Similarity=0.229 Sum_probs=76.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH--
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ-- 100 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~-- 100 (138)
..+..+|...|.++.|.|+.+|++.++... + +++=..+.++ -|+..+|.+.+|.|.++||..+++.
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~-------~--~~~Fs~~Tcr---lmI~mfd~~~~G~i~f~EF~~Lw~~i~ 124 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNG-------T--WSPFSIETCR---LMISMFDRDNSGTIGFKEFKALWKYIN 124 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcC-------C--CCCCCHHHHH---HHHHHhcCCCCCccCHHHHHHHHHHHH
Confidence 468899999999999999999999999743 2 3333444444 3788999999999999999999764
Q ss_pred -HHHHH----hccCCCcchhhhhhcchHHHHHhhcc
Q 043797 101 -MMLAV----ANGLGFLPVQMVLEEDSILKKVVEKE 131 (138)
Q Consensus 101 -~~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~ 131 (138)
..+-| +|+.|.|+..|++.....++=+|+.+
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq 160 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQ 160 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHH
Confidence 33333 88999999999999877776666544
No 41
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.22 E-value=7.7e-06 Score=66.18 Aligned_cols=78 Identities=29% Similarity=0.432 Sum_probs=65.8
Q ss_pred HHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHH
Q 043797 13 SFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLE 92 (138)
Q Consensus 13 ~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~ 92 (138)
.++|........+..+|+..|.|++|.||.+||+.+.+-+ .+++. ...+.+++.+ +-+..|.|+||.|++.
T Consensus 537 slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~---~sh~~--~~i~~~~i~~----la~~mD~NkDG~IDlN 607 (631)
T KOG0377|consen 537 SLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLL---SSHMN--GAISDDEILE----LARSMDLNKDGKIDLN 607 (631)
T ss_pred HHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHH---HhhcC--CCcCHHHHHH----HHHhhccCCCCcccHH
Confidence 4566667777889999999999999999999999998765 56665 6778888887 4459999999999999
Q ss_pred HHHHHHH
Q 043797 93 EFKAETK 99 (138)
Q Consensus 93 eF~~~l~ 99 (138)
||+..++
T Consensus 608 EfLeAFr 614 (631)
T KOG0377|consen 608 EFLEAFR 614 (631)
T ss_pred HHHHHHh
Confidence 9988765
No 42
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=7.3e-06 Score=63.67 Aligned_cols=110 Identities=17% Similarity=0.279 Sum_probs=72.6
Q ss_pred eeechhhHHHHHhcHH--HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHH------
Q 043797 4 EVLDGATIVSFVEDEY--AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYS------ 75 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~--~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~------ 75 (138)
+-++.+.++.....+. ....+..+.|..+|.|.+|.|+++++......... . +......+....++
T Consensus 92 gfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~----~--~~~~~d~e~~~~~~km~~rD 165 (325)
T KOG4223|consen 92 GFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD----L--PDEFPDEEDNEEYKKMIARD 165 (325)
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc----C--ccccccchhcHHHHHHHHHH
Confidence 3445566665554442 23357788899999999999999999887754200 0 01111111112222
Q ss_pred -HHHHhhCCCCCCCccHHHHHHHHH--------H--HHHHH----hccCCCcchhhhhh
Q 043797 76 -SLFVQFDHDSNGTVDLEEFKAETK--------Q--MMLAV----ANGLGFLPVQMVLE 119 (138)
Q Consensus 76 -~~~~~~d~~~dg~Is~~eF~~~l~--------~--~~~~~----~~~~g~i~~~~~~~ 119 (138)
..|+..|.|++|.++.+||..++. . +...+ +|+||+|++++..-
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfig 224 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIG 224 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHh
Confidence 249999999999999999999864 2 22223 88999999998765
No 43
>PLN02964 phosphatidylserine decarboxylase
Probab=98.20 E-value=9.9e-06 Score=68.75 Aligned_cols=65 Identities=29% Similarity=0.411 Sum_probs=57.4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 043797 24 LIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQM 101 (138)
Q Consensus 24 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~ 101 (138)
.+..+|..+|.+++|.|+.+||..++..+ + ...+.+++.. +|+.+|.+++|.|+++||..++...
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-------g--~~~seEEL~e----aFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAF-------G--NLVAANKKEE----LFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHh-------c--cCCCHHHHHH----HHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 48899999999999999999999999877 6 5667777765 7889999999999999999998763
No 44
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.19 E-value=1.1e-05 Score=56.70 Aligned_cols=65 Identities=17% Similarity=0.356 Sum_probs=59.6
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 22 NILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 22 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
...+...|+.||++++|.|..+.++++|..+ | ...++++++. +|+.+-.+..|.++|..|..+++
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-------g--Dr~~~eEV~~----m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM-------G--DRFTDEEVDE----MYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh-------c--ccCCHHHHHH----HHHhCCcccCCceeHHHHHHHHH
Confidence 4678999999999999999999999999988 8 9999999997 67799888999999999998876
No 45
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.13 E-value=1.7e-05 Score=54.94 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=62.7
Q ss_pred CceeeechhhHHHHHhcH------HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHH
Q 043797 1 MSVEVLDGATIVSFVEDE------YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVY 74 (138)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~------~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~ 74 (138)
||+++++...+...+... .++ +.+-+.++.||++++|.|...|++.+|..+ | ..++.+|+..++
T Consensus 61 ~~~~rl~FE~fLpm~q~vaknk~q~t~-edfvegLrvFDkeg~G~i~~aeLRhvLttl-------G--ekl~eeEVe~Ll 130 (152)
T KOG0030|consen 61 MNVKRLDFEEFLPMYQQVAKNKDQGTY-EDFVEGLRVFDKEGNGTIMGAELRHVLTTL-------G--EKLTEEEVEELL 130 (152)
T ss_pred hhhhhhhHHHHHHHHHHHHhccccCcH-HHHHHHHHhhcccCCcceeHHHHHHHHHHH-------H--hhccHHHHHHHH
Confidence 455666666655444332 233 456688999999999999999999999998 8 999999998743
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHH
Q 043797 75 SSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 75 ~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
.- -.|++|-|.|++|++.+
T Consensus 131 ----ag-~eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 131 ----AG-QEDSNGCINYEAFVKHI 149 (152)
T ss_pred ----cc-ccccCCcCcHHHHHHHH
Confidence 23 24678999999998764
No 46
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.09 E-value=3.5e-05 Score=56.22 Aligned_cols=84 Identities=23% Similarity=0.337 Sum_probs=58.2
Q ss_pred HHHHHHhhhhcCCCCCc-ccHHHHHHHHHhHHhhhhhhCCCCCCCHH-HHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGL-LSHSEMMKELKCLRVFETHFGIDEKPDPD-ELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~-Is~~el~~~l~~~~~~~~~~g~~~~~~~~-e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
-...++++.++++++|. |+..+|.+.+..+ . ...+.. .+.- .|+.+|.+++|.|+.+|+..++..
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f-------~--~~~~~~~Kl~f----aF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVF-------S--PKASKREKLRF----AFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhh-------c--CCccHHHHHHH----HHHHhcCCCCCcCcHHHHHHHHHH
Confidence 34567777777777777 8888887777655 3 333333 3333 588999999999999999888653
Q ss_pred HHH-------------------HH-hccCCCcchhhhhh
Q 043797 101 MML-------------------AV-ANGLGFLPVQMVLE 119 (138)
Q Consensus 101 ~~~-------------------~~-~~~~g~i~~~~~~~ 119 (138)
+.. .+ .++||.|+.++...
T Consensus 133 ~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~ 171 (187)
T KOG0034|consen 133 MVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCK 171 (187)
T ss_pred HHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 221 11 77899999888776
No 47
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.06 E-value=6e-06 Score=42.70 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=25.3
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHH-hH
Q 043797 24 LIRERFAHLDTDNDGLLSHSEMMKELK-CL 52 (138)
Q Consensus 24 ~l~~~F~~~D~d~~G~Is~~el~~~l~-~~ 52 (138)
+++.+|+.||.|++|+|+.+|+..+++ ++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 467899999999999999999999998 55
No 48
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.05 E-value=5e-06 Score=42.59 Aligned_cols=25 Identities=44% Similarity=0.817 Sum_probs=23.0
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 76 SLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 76 ~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
++|+.+|.|++|.|+++||..+++.
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4899999999999999999999875
No 49
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=8.6e-05 Score=57.82 Aligned_cols=87 Identities=26% Similarity=0.345 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 21 FNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 21 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
....-.+.|+..|.|++|.++.+||..++ . |.. -+.-..-++...+...|.|+||.|+++||+.=|-+
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFL----------H-PEe-~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFL----------H-PEE-HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhcc----------C-hhh-cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 33466788999999999999999998887 3 211 11112223344678999999999999999887642
Q ss_pred ----------------HHHHH--hccCCCcchhhhhh
Q 043797 101 ----------------MMLAV--ANGLGFLPVQMVLE 119 (138)
Q Consensus 101 ----------------~~~~~--~~~~g~i~~~~~~~ 119 (138)
.+..+ +|+||+++-.+++.
T Consensus 229 ~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~ 265 (325)
T KOG4223|consen 229 HEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLD 265 (325)
T ss_pred ccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhc
Confidence 22333 88999999998884
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.88 E-value=1.6e-05 Score=39.22 Aligned_cols=25 Identities=32% Similarity=0.668 Sum_probs=22.2
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHH
Q 043797 25 IRERFAHLDTDNDGLLSHSEMMKEL 49 (138)
Q Consensus 25 l~~~F~~~D~d~~G~Is~~el~~~l 49 (138)
++..|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 51
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.81 E-value=0.0002 Score=47.54 Aligned_cols=65 Identities=26% Similarity=0.333 Sum_probs=53.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMM 102 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~ 102 (138)
..+...|..+|+ .+|.|+.++.+.++... | ++.+.+.. +|...|.+++|+++++||.-.|.-+.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S-------~----L~~~~L~~----IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKS-------G----LPRDVLAQ----IWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHT-------T----SSHHHHHH----HHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHc-------C----CCHHHHHH----HHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 467889999986 57999999999998775 5 66777665 77899999999999999998887554
Q ss_pred H
Q 043797 103 L 103 (138)
Q Consensus 103 ~ 103 (138)
.
T Consensus 74 ~ 74 (104)
T PF12763_consen 74 R 74 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00018 Score=57.82 Aligned_cols=80 Identities=24% Similarity=0.447 Sum_probs=66.0
Q ss_pred eeechhhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCC
Q 043797 4 EVLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDH 83 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~ 83 (138)
++||-+.++.-+.+ -+.++.+.|+..|.+.||.|..+|+.+.|+.+ | .+++.++..+ +++..|.
T Consensus 66 g~vDy~eF~~Y~~~---~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-------g--i~l~de~~~k----~~e~~d~ 129 (463)
T KOG0036|consen 66 GRVDYSEFKRYLDN---KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-------G--IQLSDEKAAK----FFEHMDK 129 (463)
T ss_pred CcccHHHHHHHHHH---hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-------C--CccCHHHHHH----HHHHhcc
Confidence 45666666655543 34578999999999999999999999999998 8 8888888887 6669999
Q ss_pred CCCCCccHHHHHHHHH
Q 043797 84 DSNGTVDLEEFKAETK 99 (138)
Q Consensus 84 ~~dg~Is~~eF~~~l~ 99 (138)
++++.|+++||...+.
T Consensus 130 ~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 130 DGKATIDLEEWRDHLL 145 (463)
T ss_pred CCCeeeccHHHHhhhh
Confidence 9999999999988753
No 53
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.70 E-value=0.00019 Score=57.90 Aligned_cols=60 Identities=27% Similarity=0.456 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHH
Q 043797 17 DEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKA 96 (138)
Q Consensus 17 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~ 96 (138)
....+...+...|+.+|.+++|.|+.+||. + .. .+|..+|.|++|.|+++||..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~-------------~---------~~----~~F~~~D~d~DG~Is~eEf~~ 381 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWL-------------G---------SD----AVFDALDLNHDGKITPEEMRA 381 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHH-------------H---------HH----HHHHHhCCCCCCCCcHHHHHH
Confidence 345566677888999999999999999882 1 01 267799999999999999988
Q ss_pred HHHHHH
Q 043797 97 ETKQMM 102 (138)
Q Consensus 97 ~l~~~~ 102 (138)
.+....
T Consensus 382 ~~~~~~ 387 (391)
T PRK12309 382 GLGAAL 387 (391)
T ss_pred HHHHHH
Confidence 887544
No 54
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00041 Score=46.76 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=66.8
Q ss_pred echhhHHHHHhcH------HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCC-C-CCCCHHHHHHHHHHH
Q 043797 6 LDGATIVSFVEDE------YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGI-D-EKPDPDELARVYSSL 77 (138)
Q Consensus 6 ~~~~~~~~~~~~~------~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~-~-~~~~~~e~~~~~~~~ 77 (138)
-|..-|.+||+.. .+..+.-.+.|.+.|.|++|+++--|+..++...+. ...-|. | +-+++.++..++..+
T Consensus 44 hDeeHIkeHLegki~~~a~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~-~h~~ghep~Pl~sE~Ele~~iD~v 122 (144)
T KOG4065|consen 44 HDEEHIKEHLEGKIEKVAKMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHD-AHDSGHEPVPLSSEAELERLIDAV 122 (144)
T ss_pred ccHHHHHHHHhcccchhhhCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhh-hhhcCCCCCCCCCHHHHHHHHHHH
Confidence 3455566666543 112233357899999999999999999999886522 112233 2 446789999999999
Q ss_pred HHhhCCCCCCCccHHHHHHH
Q 043797 78 FVQFDHDSNGTVDLEEFKAE 97 (138)
Q Consensus 78 ~~~~d~~~dg~Is~~eF~~~ 97 (138)
.+.-|.|+||.|+|.||.+.
T Consensus 123 L~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 123 LDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hcccccCCCceeeHHHHHhh
Confidence 99999999999999999864
No 55
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.55 E-value=0.00036 Score=40.25 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=37.6
Q ss_pred cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 043797 39 LLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQM 101 (138)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~ 101 (138)
+++..|++.+|+.+ + ..++...... +|+.+|.+++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~-------N--I~~~~~yA~~----LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM-------N--IEMDDEYARQ----LFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHT-------T------HHHHHH----HHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-------c--cCcCHHHHHH----HHHHhcccCCCCccHHHHHHHHHHh
Confidence 36789999999988 6 6666665554 8999999999999999999988753
No 56
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.50 E-value=0.00026 Score=42.33 Aligned_cols=45 Identities=24% Similarity=0.478 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHHH----------------HHHH-hccCCCcchhhhhh
Q 043797 75 SSLFVQFDHDSNGTVDLEEFKAETKQM----------------MLAV-ANGLGFLPVQMVLE 119 (138)
Q Consensus 75 ~~~~~~~d~~~dg~Is~~eF~~~l~~~----------------~~~~-~~~~g~i~~~~~~~ 119 (138)
+.+|+.+|.+++|.|+.+||..++..+ +..+ .+++|.|+..+...
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 358999999999999999999997642 2222 78999999988754
No 57
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.41 E-value=0.0002 Score=35.22 Aligned_cols=23 Identities=39% Similarity=0.736 Sum_probs=20.7
Q ss_pred HHHHhhCCCCCCCccHHHHHHHH
Q 043797 76 SLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 76 ~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
..|+.+|.|+||.|+++||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 47889999999999999998864
No 58
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.22 E-value=0.00047 Score=39.70 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=36.9
Q ss_pred eeechhhHHHHHhcHH---HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 043797 4 EVLDGATIVSFVEDEY---AFNILIRERFAHLDTDNDGLLSHSEMMKELKC 51 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~---~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 51 (138)
+.++...++..+...+ .-..++..+|..+|++++|.|+++||..++..
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4567777887773321 22357999999999999999999999998754
No 59
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.19 E-value=0.0035 Score=40.50 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH----------HHHHH-hccCCCcchhhhhhcchHHHHHhhcc
Q 043797 63 EKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ----------MMLAV-ANGLGFLPVQMVLEEDSILKKVVEKE 131 (138)
Q Consensus 63 ~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~----------~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~ 131 (138)
+.++++++..+ ..+|..+|.+++|.|+.+++..+++. ++..+ .+++|.|+..+....-..+.+.....
T Consensus 2 ~~ls~~~~~~l-~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~ 80 (96)
T smart00027 2 WAISPEDKAKY-EQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80 (96)
T ss_pred CCCCHHHHHHH-HHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 44667776654 45999999999999999999998753 22223 56889999998887666666655443
No 60
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.06 E-value=0.00078 Score=34.56 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=21.4
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHH
Q 043797 76 SLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 76 ~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
.+|+.+|.+++|.|+.+||..+++
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHH
Confidence 488999999999999999999987
No 61
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.03 E-value=0.002 Score=58.94 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=63.8
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCC-------CHHHHHHHHHHHHHhhCCCCCCCccHHH
Q 043797 21 FNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKP-------DPDELARVYSSLFVQFDHDSNGTVDLEE 93 (138)
Q Consensus 21 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~-------~~~e~~~~~~~~~~~~d~~~dg~Is~~e 93 (138)
...++.-.|++||++.+|.++.++|+.+|+++ | +.. +.++..+ ++...|++.+|+|+..+
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-------g--Y~lpmvEe~~~~p~fe~----~ld~vDP~r~G~Vsl~d 2317 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSL-------G--YDLPMVEEGEPEPEFEE----ILDLVDPNRDGYVSLQD 2317 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhc-------C--CCCcccccCCCChhHHH----HHHhcCCCCcCcccHHH
Confidence 33567889999999999999999999999987 5 332 2345555 55599999999999999
Q ss_pred HHHHHHH-----------HHHHH---hccCCCcchhhh
Q 043797 94 FKAETKQ-----------MMLAV---ANGLGFLPVQMV 117 (138)
Q Consensus 94 F~~~l~~-----------~~~~~---~~~~g~i~~~~~ 117 (138)
|+.+|.. +-.+| ..|--||+..++
T Consensus 2318 Y~afmi~~ETeNI~s~~eIE~AfraL~a~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2318 YMAFMISKETENILSSEEIEDAFRALDAGKPYVTKEEL 2355 (2399)
T ss_pred HHHHHHhcccccccchHHHHHHHHHhhcCCccccHHHH
Confidence 9999852 33444 336667766665
No 62
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.95 E-value=0.00032 Score=47.18 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHH
Q 043797 21 FNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKA 96 (138)
Q Consensus 21 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~ 96 (138)
....+.+.|..+|.|+||.++..|+..+...+ .+... ..+..++..|.|+||.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-----------~~~e~----C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-----------MPPEH----CARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-----------STTGG----GHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-----------hhhHH----HHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34678899999999999999999998764322 12222 223477899999999999999864
No 63
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.83 E-value=0.0034 Score=42.42 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHH--------HHHHHHH-hccCCCcchhhhhh
Q 043797 73 VYSSLFVQFDHDSNGTVDLEEFKAET--------KQMMLAV-ANGLGFLPVQMVLE 119 (138)
Q Consensus 73 ~~~~~~~~~d~~~dg~Is~~eF~~~l--------~~~~~~~-~~~~g~i~~~~~~~ 119 (138)
-+.+.|..+|.|+||.|+.+|+..+. ..++..+ .+++|.||..+...
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~ 104 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCY 104 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence 34568999999999999999999773 2344444 88999999998765
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0041 Score=50.54 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred eeechhhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCC---C----CCCCHHHHHHHHHH
Q 043797 4 EVLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGI---D----EKPDPDELARVYSS 76 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~---~----~~~~~~e~~~~~~~ 76 (138)
+++..|.+-.|+.=.......++-.|++||.|++|-|+.+||..+++-+. ....+|. + .+.-..+++..+
T Consensus 214 GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~-sQ~~~g~~hrd~~tt~~s~~~~~nsaL-- 290 (489)
T KOG2643|consen 214 GLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIR-SQTSVGVRHRDHFTTGNSFKVEVNSAL-- 290 (489)
T ss_pred CeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHH-hccccceecccCccccceehhhhhhhH--
Confidence 34455555555444444456677899999999999999999999876431 2222331 0 011122333221
Q ss_pred HHHhhCCCCCCCccHHHHHHHHHHHHHHH--------hccC-CCcchhhhhh
Q 043797 77 LFVQFDHDSNGTVDLEEFKAETKQMMLAV--------ANGL-GFLPVQMVLE 119 (138)
Q Consensus 77 ~~~~~d~~~dg~Is~~eF~~~l~~~~~~~--------~~~~-g~i~~~~~~~ 119 (138)
.-.-+..++++.+++++|..++..+..++ ..++ |.|+-...-+
T Consensus 291 ~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~ 342 (489)
T KOG2643|consen 291 LTYFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAE 342 (489)
T ss_pred HHHhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHH
Confidence 23357788999999999999987655444 3334 7887665543
No 65
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.78 E-value=0.0016 Score=31.20 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=24.0
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHh
Q 043797 25 IRERFAHLDTDNDGLLSHSEMMKELKC 51 (138)
Q Consensus 25 l~~~F~~~D~d~~G~Is~~el~~~l~~ 51 (138)
+..+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988764
No 66
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.71 E-value=0.0044 Score=47.13 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=60.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHH--h-----hhhhhCCCC--------------------------------
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLR--V-----FETHFGIDE-------------------------------- 63 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~-----~~~~~g~~~-------------------------------- 63 (138)
.+-+.-|+..|+|++|.|+|+|++.-+..++ + ..-+..-+.
T Consensus 140 eeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadllltee 219 (362)
T KOG4251|consen 140 EESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEE 219 (362)
T ss_pred hhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHH
Confidence 3456678999999999999999986554331 0 000000000
Q ss_pred --------CCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH-----------------HHHHHHH-----hccCCCcc
Q 043797 64 --------KPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET-----------------KQMMLAV-----ANGLGFLP 113 (138)
Q Consensus 64 --------~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l-----------------~~~~~~~-----~~~~g~i~ 113 (138)
..+..-+..+.+++.+.+|.++|.+++..+|+... ++-.+.| .+.+|.++
T Consensus 220 EflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivT 299 (362)
T KOG4251|consen 220 EFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVT 299 (362)
T ss_pred HHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCcccee
Confidence 00111222244445778899999999999997762 2233444 66788888
Q ss_pred hhhhhhcc
Q 043797 114 VQMVLEED 121 (138)
Q Consensus 114 ~~~~~~~~ 121 (138)
..++-++-
T Consensus 300 aeELe~y~ 307 (362)
T KOG4251|consen 300 AEELEDYV 307 (362)
T ss_pred HHHHHhhc
Confidence 88877643
No 67
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.70 E-value=0.0054 Score=43.16 Aligned_cols=84 Identities=21% Similarity=0.361 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 21 FNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 21 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
|.+.+-.+|. .|+.|.+|.+++-.+++-+ + ...+.++...| -|+.+|-|+|+.|.-++....+..
T Consensus 72 fk~ri~e~FS---eDG~GnlsfddFlDmfSV~-------s---E~APrdlK~~Y--AFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 72 FKRRICEVFS---EDGRGNLSFDDFLDMFSVF-------S---EMAPRDLKAKY--AFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHHHHhc---cCCCCcccHHHHHHHHHHH-------H---hhChHHhhhhh--eeEEeecCCCCcccHHHHHHHHHH
Confidence 4455555555 5899999999999999876 3 34455666544 489999999999999998877653
Q ss_pred -------------HHHHH-----hccCCCcchhhhhh
Q 043797 101 -------------MMLAV-----ANGLGFLPVQMVLE 119 (138)
Q Consensus 101 -------------~~~~~-----~~~~g~i~~~~~~~ 119 (138)
+.... -+|+|.+++.+..+
T Consensus 137 lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~ 173 (189)
T KOG0038|consen 137 LTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEH 173 (189)
T ss_pred HhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 11111 66889998877654
No 68
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.68 E-value=0.0052 Score=39.56 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=40.1
Q ss_pred eechhhHHHHHhc-HHHH--H-HHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 5 VLDGATIVSFVED-EYAF--N-ILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~--~-~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
-++.+.++.++.. -+.+ . ..+..+++.+|.|++|.|+.+||..++..+
T Consensus 25 ~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 25 SLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred eECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4677888988887 3443 2 579999999999999999999999998776
No 69
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.59 E-value=0.011 Score=49.05 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=54.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCC-CCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGID-EKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQM 101 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~-~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~ 101 (138)
..+...|...| +++|+|+..++..++... +.+ .....+++.. +....+.+.+|.++|++|+.++..+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-------~~~~g~~~~eei~~----~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKA-------KLPLGYFVREEIKE----ILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHh-------cccccchhHHHHHH----HHhccCCCcCCccCHHHHHHHHHhh
Confidence 57889999999 999999999999999876 311 1233555555 6679999999999999999987654
Q ss_pred H
Q 043797 102 M 102 (138)
Q Consensus 102 ~ 102 (138)
.
T Consensus 87 ~ 87 (627)
T KOG0046|consen 87 K 87 (627)
T ss_pred h
Confidence 4
No 70
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.43 E-value=0.024 Score=45.86 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=36.3
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHHHHHHH-hccCCCcchhhhhhcc
Q 043797 76 SLFVQFDHDSNGTVDLEEFKAETKQMMLAV-ANGLGFLPVQMVLEED 121 (138)
Q Consensus 76 ~~~~~~d~~~dg~Is~~eF~~~l~~~~~~~-~~~~g~i~~~~~~~~~ 121 (138)
.+|+.+|.+++|.|+.+||.. ...++..+ .+++|.|+..+++.-.
T Consensus 338 ~aF~~~D~dgdG~Is~~E~~~-~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 338 EIFRLYDLDGDGFITREEWLG-SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred HHHHHhCCCCCCcCcHHHHHH-HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 488899999999999999964 34455555 7899999999988743
No 71
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.33 E-value=0.0041 Score=47.31 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=49.4
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 043797 22 NILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAE 97 (138)
Q Consensus 22 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~ 97 (138)
.+.+..+|+..|-|-+|+||..|+++.+..- ++-||. ......++ -|+..|.++||.|+++||.--
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImek--taEHfq--eameeSkt------hFraVDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEK--TAEHFQ--EAMEESKT------HFRAVDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHH--HHHHHH--HHHhhhhh------heeeeCCCCCCceehhhhhhH
Confidence 3577889999999999999999999988742 344443 22222221 478999999999999999543
No 72
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.10 E-value=0.026 Score=46.27 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=56.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHH----hhCCCCCCCccHHHHHHHHH
Q 043797 24 LIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFV----QFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 24 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~----~~d~~~dg~Is~~eF~~~l~ 99 (138)
.+...|-.+|+|.+|.|+.++++..... ..+.-=++ ++|. ..-.-.+|.++|++|+.++-
T Consensus 279 viy~kFweLD~Dhd~lidk~~L~ry~d~------------tlt~~ivd----RIFs~v~r~~~~~~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 279 VIYCKFWELDTDHDGLIDKEDLKRYGDH------------TLTERIVD----RIFSQVPRGFTVKVEGRMDYKDFVDFIL 342 (493)
T ss_pred HHHHHHhhhccccccccCHHHHHHHhcc------------chhhHHHH----HHHhhccccceeeecCcccHHHHHHHHH
Confidence 4455578899999999999999876422 23333334 4555 44455789999999998875
Q ss_pred HH--------HHH-H----hccCCCcchhhhhhc
Q 043797 100 QM--------MLA-V----ANGLGFLPVQMVLEE 120 (138)
Q Consensus 100 ~~--------~~~-~----~~~~g~i~~~~~~~~ 120 (138)
.. ++. | -+|+|+++..+++.-
T Consensus 343 A~e~k~t~~SleYwFrclDld~~G~Lt~~el~~f 376 (493)
T KOG2562|consen 343 AEEDKDTPASLEYWFRCLDLDGDGILTLNELRYF 376 (493)
T ss_pred HhccCCCccchhhheeeeeccCCCcccHHHHHHH
Confidence 21 111 1 679999999998873
No 73
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.09 E-value=0.022 Score=36.30 Aligned_cols=49 Identities=29% Similarity=0.363 Sum_probs=39.0
Q ss_pred eeechhhHHHHHhcH-HH-H-----HHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 4 EVLDGATIVSFVEDE-YA-F-----NILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~-~-----~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
+.+....|+.++... +. . ...+..+|+.+|.+++|.|+.++|..++..+
T Consensus 25 ~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 25 DTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred ccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 356777888888643 22 2 4679999999999999999999999988765
No 74
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.98 E-value=0.015 Score=27.54 Aligned_cols=25 Identities=44% Similarity=0.727 Sum_probs=21.9
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 76 SLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 76 ~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
.+|+.+|.+++|.|++.+|..+++.
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4788999999999999999988764
No 75
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.94 E-value=0.056 Score=44.97 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 20 AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 20 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
.........|+.||..++|.+|.+++.+++.+. .-+-.+|.+++.+-+...+.+..+ ..++|.+|.+++.
T Consensus 105 ~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t---~l~~~~~f~~d~efI~~~Fg~~~~-------r~~ny~~f~Q~lh 174 (694)
T KOG0751|consen 105 APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT---NLHHHIPFNWDSEFIKLHFGDIRK-------RHLNYAEFTQFLH 174 (694)
T ss_pred CchHHHHHHHHHhcccCCCceehHHHHHHHhcc---ccccCCCccCCcchHHHHhhhHHH-------HhccHHHHHHHHH
Confidence 334567889999999999999999999999875 222233566777766654333333 3489999999987
Q ss_pred HHH-----HHH----hccCCCcchhhhhhc
Q 043797 100 QMM-----LAV----ANGLGFLPVQMVLEE 120 (138)
Q Consensus 100 ~~~-----~~~----~~~~g~i~~~~~~~~ 120 (138)
++. ++| +.++|+|+.-..+++
T Consensus 175 ~~~~E~~~qafr~~d~~~ng~is~Ldfq~i 204 (694)
T KOG0751|consen 175 EFQLEHAEQAFREKDKAKNGFISVLDFQDI 204 (694)
T ss_pred HHHHHHHHHHHHHhcccCCCeeeeechHhh
Confidence 643 334 668899987766664
No 76
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.93 E-value=0.014 Score=34.49 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=36.9
Q ss_pred eechhhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 5 VLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
.++...++..+...+.-...+..+|+.+|.+++|.|+..++..++..+
T Consensus 15 ~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 15 LISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred cCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 455566776665544344678899999999999999999999888654
No 77
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.89 E-value=0.017 Score=37.06 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=38.1
Q ss_pred eechhhHHHHHhcHHH-------HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 5 VLDGATIVSFVEDEYA-------FNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~-------~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
-+..+.++.++..+.+ -...+..+++.+|.|++|.|+.+||..++..+
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3555678888877621 12578899999999999999999999988776
No 78
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.86 E-value=0.058 Score=33.96 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=37.6
Q ss_pred HHHHHHhhCC--CCCCCccHHHHHHHHHHH-----------------HHHH-hccCCCcchhhhhhcchHHH
Q 043797 74 YSSLFVQFDH--DSNGTVDLEEFKAETKQM-----------------MLAV-ANGLGFLPVQMVLEEDSILK 125 (138)
Q Consensus 74 ~~~~~~~~d~--~~dg~Is~~eF~~~l~~~-----------------~~~~-~~~~g~i~~~~~~~~~~~~~ 125 (138)
+...|..+|. +++|.|+.++|..+++.. +..+ .+++|.|+..+...--..+.
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3348999999 899999999999987531 1111 56789999888876444443
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.61 E-value=0.013 Score=38.79 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=42.6
Q ss_pred eeechhhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 4 EVLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
+.+.|.+.+.++..++--...+.++|...|.+++|+++.+||..+|.-+
T Consensus 24 g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 24 GKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp TEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4578888999999888777899999999999999999999999988754
No 80
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.52 E-value=0.077 Score=33.83 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=37.8
Q ss_pred echhhHHHHHhc-HHH------HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 6 LDGATIVSFVED-EYA------FNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 6 ~~~~~~~~~~~~-~~~------~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
++...++.++.. .+. -...+..+|+.+|++++|.|+.++|..++..+
T Consensus 28 Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 28 LSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred ECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 566778888864 222 13578999999999999999999999998876
No 81
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.48 E-value=0.05 Score=30.55 Aligned_cols=43 Identities=35% Similarity=0.553 Sum_probs=32.6
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHH------------HHHHH-hccCCCcchhhhh
Q 043797 76 SLFVQFDHDSNGTVDLEEFKAETKQ------------MMLAV-ANGLGFLPVQMVL 118 (138)
Q Consensus 76 ~~~~~~d~~~dg~Is~~eF~~~l~~------------~~~~~-~~~~g~i~~~~~~ 118 (138)
.+|..+|.+++|.|++++|..++.. +...+ .+++|.|++.+..
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFL 59 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence 3788999999999999999988763 22222 5678888887653
No 82
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=95.39 E-value=0.028 Score=35.95 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=38.4
Q ss_pred eeechhhHHHHHhcH-----HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 4 EVLDGATIVSFVEDE-----YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~-----~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
+.+....++.++.+. ..-..++..+|+.+|.|++|.|+.+||..++..+
T Consensus 27 g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 27 NTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 356777888888532 1233688999999999999999999999888765
No 83
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.25 E-value=0.063 Score=34.55 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=37.0
Q ss_pred echhhHHHHHhcHH-------HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 6 LDGATIVSFVEDEY-------AFNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 6 ~~~~~~~~~~~~~~-------~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
+....|+.++.... .-...+..+++.+|.|++|.|+.+||..++..+
T Consensus 29 Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 29 LSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred ECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56677887775531 122478999999999999999999999999776
No 84
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.18 E-value=0.048 Score=34.88 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=38.2
Q ss_pred eechhhHHHHHhc-----HHH--HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 5 VLDGATIVSFVED-----EYA--FNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 5 ~~~~~~~~~~~~~-----~~~--~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
.++...++.++.. .+. -...+..+++.+|+|++|.|+.++|..++..+
T Consensus 26 ~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 26 KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred EECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4677788888876 221 23569999999999999999999999888765
No 85
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.17 E-value=0.055 Score=34.72 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=38.6
Q ss_pred eeechhhHHHHHhcH-H------HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 4 EVLDGATIVSFVEDE-Y------AFNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~-~------~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
+.++...++.++... + .-...+..+++.+|.+++|.|+.++|..++...
T Consensus 25 G~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 25 NTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred CeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 467777888877642 1 123578999999999999999999999988765
No 86
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.12 E-value=0.06 Score=34.82 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=36.5
Q ss_pred echhhHHHHHhcHHH-HH------HHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 6 LDGATIVSFVEDEYA-FN------ILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~------~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
+....++.+++.+-+ +. ..+..+++.+|.|+||.|+.+||..++..+
T Consensus 24 Lsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 24 LNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 345667777766622 21 358899999999999999999999998776
No 87
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.12 E-value=0.12 Score=32.23 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=46.7
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCC----CCCCccHHHHHHHHH
Q 043797 24 LIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHD----SNGTVDLEEFKAETK 99 (138)
Q Consensus 24 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~----~dg~Is~~eF~~~l~ 99 (138)
++..+|..|-. +.+.++.++|..+|.... + +...+..++..++. .+..+ ..+.+++++|..+|.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ------~-~~~~~~~~~~~li~----~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQ------G-EPRLTDEQAKELIE----KFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTS------S--TTSSHHHHHHHHH----HHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHh------c-cccCcHHHHHHHHH----HHccchhhcccCCcCHHHHHHHHC
Confidence 46788999955 789999999999998641 3 12456777776444 54333 478999999999885
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.01 E-value=0.056 Score=31.16 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
..+..+|+.+|++++|.+..+|+..+++.+
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 467789999999999999999999998765
No 89
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.62 Score=38.29 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=51.9
Q ss_pred HHHHhcHHHHHH-HHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCcc
Q 043797 12 VSFVEDEYAFNI-LIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVD 90 (138)
Q Consensus 12 ~~~~~~~~~~~~-~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is 90 (138)
.++++-...+.. -+.--|..+|+...|.|+..+|..++-.+. + .........++++-+.++.+ +..|+
T Consensus 306 deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a------~----~n~~~k~~~lkrvk~kf~~~-~~gIS 374 (489)
T KOG2643|consen 306 DEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYA------G----VNSKKKHKYLKRVKEKFKDD-GKGIS 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHc------c----cchHhHHHHHHHHHHhccCC-CCCcC
Confidence 344444444444 346679999999999999999999987651 2 23334444555666677665 66799
Q ss_pred HHHHHHHH
Q 043797 91 LEEFKAET 98 (138)
Q Consensus 91 ~~eF~~~l 98 (138)
++||.++.
T Consensus 375 l~Ef~~Ff 382 (489)
T KOG2643|consen 375 LQEFKAFF 382 (489)
T ss_pred HHHHHHHH
Confidence 99987774
No 90
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=0.27 Score=41.07 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 19 YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
+++.+.+-..|+..-+|-.|+|+-+--+.++..- .++-.|+.. +|...|.+.||.+++.||...+
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS-----------klpi~ELsh----IWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS-----------KLPIEELSH----IWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhc-----------cCchHHHHH----HHhhcccCccccccHHHHHhhH
Confidence 4455667889999999999999999888887653 355667776 7779999999999999999887
Q ss_pred H
Q 043797 99 K 99 (138)
Q Consensus 99 ~ 99 (138)
.
T Consensus 292 H 292 (737)
T KOG1955|consen 292 H 292 (737)
T ss_pred h
Confidence 5
No 91
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.09 E-value=0.28 Score=38.73 Aligned_cols=70 Identities=26% Similarity=0.383 Sum_probs=48.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCH------HHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 27 ERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDP------DELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 27 ~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~------~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
..|...|.|++|+++..|+..++..- +.+.|. |.+... ++.-++-..+++..|.|.|.-|+.++|++-..
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkE--LEKvYd-pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKE--LEKVYD-PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHH--HHHhcC-CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 45677788999999999999888753 455565 222221 12222223358899999999999999988754
No 92
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.03 E-value=0.92 Score=31.97 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=49.3
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCC-CCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHHH
Q 043797 26 RERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGI-DEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMMLA 104 (138)
Q Consensus 26 ~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~-~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~~~ 104 (138)
...|..|...+...++...|..+|+.. || +..++..+++- +|..+-..+...|+|++|...|..+...
T Consensus 5 F~~f~~fG~~~~~~m~~~~F~Kl~kD~-------~i~d~k~t~tdvDi----iF~Kvk~k~~~~I~f~~F~~aL~~lA~~ 73 (154)
T PF05517_consen 5 FKAFASFGKKNGTEMDSKNFAKLCKDC-------GIIDKKLTSTDVDI----IFSKVKAKGARKITFEQFLEALAELAEK 73 (154)
T ss_dssp HHHHHCSSTSTSSEEEHHHHHHHHHHT-------SS--SSS-HHHHHH----HHHHHT-SS-SEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccHHHHHHHHHHc-------CCCCCCCchHHHHH----HHHHhhcCCCcccCHHHHHHHHHHHHHH
Confidence 344555556666789999999999976 55 45688888887 6667766666779999999999876655
Q ss_pred H
Q 043797 105 V 105 (138)
Q Consensus 105 ~ 105 (138)
-
T Consensus 74 ~ 74 (154)
T PF05517_consen 74 K 74 (154)
T ss_dssp H
T ss_pred h
Confidence 5
No 93
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=92.97 E-value=0.71 Score=38.13 Aligned_cols=81 Identities=15% Similarity=0.310 Sum_probs=54.2
Q ss_pred echhhHHHHHhcHHHHHHHHHHHhh----hhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhh
Q 043797 6 LDGATIVSFVEDEYAFNILIRERFA----HLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQF 81 (138)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~F~----~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~ 81 (138)
++...|..+-..... ..-+.++|. .+=.-.+|+++.+++..++-++ - ..-+++-+. =+|+-+
T Consensus 295 idk~~L~ry~d~tlt-~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-------e--~k~t~~Sle----YwFrcl 360 (493)
T KOG2562|consen 295 IDKEDLKRYGDHTLT-ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-------E--DKDTPASLE----YWFRCL 360 (493)
T ss_pred cCHHHHHHHhccchh-hHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-------c--cCCCccchh----hheeee
Confidence 444445544444333 346678888 3334578999999999998776 2 222333332 279999
Q ss_pred CCCCCCCccHHHHHHHHHH
Q 043797 82 DHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 82 d~~~dg~Is~~eF~~~l~~ 100 (138)
|.+++|.|+..|...+...
T Consensus 361 Dld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 361 DLDGDGILTLNELRYFYEE 379 (493)
T ss_pred eccCCCcccHHHHHHHHHH
Confidence 9999999999998777654
No 94
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=0.33 Score=42.53 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=51.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
..+..+|..+|+...|++|-..-+.+|-.- | +++..+.. +|...|.|+||+++.+||.-.|.
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS-------~----Lpq~~LA~----IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQS-------G----LPQNQLAH----IWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhc-------C----CchhhHhh----heeeeccCCCCcccHHHHHHHHH
Confidence 356789999999999999999998888553 4 56666654 78899999999999999976665
No 95
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.22 E-value=0.32 Score=45.39 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=48.6
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 27 ERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 27 ~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
..|+.||+|+.|-|+..+|..+|..- ..-++.+++. +..-...+.+..++|++|+.-+.+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~----------k~ytqse~df----llscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH----------KHYTQSEIDF----LLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc----------ccchhHHHHH----HHHhhccCccccccHHHHHHHhcC
Confidence 45789999999999999999998763 4567888887 444677788889999999877653
No 96
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.62 E-value=0.081 Score=41.86 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=49.5
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
..+.+.|..+|+|+++.|...|++-+=+-+ ...+. ..+.-+.+++..|.|+|..|++.|+...+.
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l----------~k~s~--~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVL----------LKKSK--PRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHH----------Hhhcc--HHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 356788999999999999999998765443 11222 223344589999999999999999988875
No 97
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.23 E-value=1.5 Score=31.66 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=37.9
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHH----------H---------HHHHhccCCCcchhhhhh--cchHH
Q 043797 75 SSLFVQFDHDSNGTVDLEEFKAETKQ----------M---------MLAVANGLGFLPVQMVLE--EDSIL 124 (138)
Q Consensus 75 ~~~~~~~d~~~dg~Is~~eF~~~l~~----------~---------~~~~~~~~g~i~~~~~~~--~~~~~ 124 (138)
.++|.+++..+.+.+++.|...+++. . .....+.+|.+..+.+|- ||+..
T Consensus 99 e~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vYDGSlF 169 (174)
T PF05042_consen 99 EEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGVYDGSLF 169 (174)
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhcchHHH
Confidence 34699999888899999999999863 1 111168899999999987 55544
No 98
>PF14658 EF-hand_9: EF-hand domain
Probab=91.16 E-value=0.57 Score=28.45 Aligned_cols=49 Identities=6% Similarity=0.192 Sum_probs=36.1
Q ss_pred eeeechhhHHHHHhcH---HHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHh
Q 043797 3 VEVLDGATIVSFVEDE---YAFNILIRERFAHLDTDND-GLLSHSEMMKELKC 51 (138)
Q Consensus 3 ~~~~~~~~~~~~~~~~---~~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~ 51 (138)
.++|.=+.|..+|... .....+++.+.+.+||++. |.|+.+.|...|+.
T Consensus 12 tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3445555555555443 3355799999999999998 99999999988864
No 99
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.01 E-value=0.82 Score=38.85 Aligned_cols=69 Identities=28% Similarity=0.347 Sum_probs=57.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMM 102 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~ 102 (138)
......|..+|.++.|+++..++...|+.. + ..++.+.+++ +.+..|.+-.|.+...||.+++..+.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~-------~--~~~d~~~~~~----~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSE-------N--VGWDEDRLHE----ELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHh-------c--CCCCHHHHHH----HHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 456678999999999999999999999887 5 5788887776 55588888899999999999987655
Q ss_pred HH
Q 043797 103 LA 104 (138)
Q Consensus 103 ~~ 104 (138)
.+
T Consensus 660 ~g 661 (680)
T KOG0042|consen 660 NG 661 (680)
T ss_pred cC
Confidence 43
No 100
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=89.97 E-value=0.5 Score=37.52 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=31.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
+.++..|..||.+.+|.++..+....+.-+ + | ...+..-++- -|+.++.+.||.+.-.+|..+++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavl---c---~--p~~t~~iiq~----afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVL---C---G--PPVTPVIIQY----AFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheee---e---C--CCCcHHHHHH----HHHhcccccccccchHHHHHHHH
Confidence 345556666666666666665555555432 0 2 2222222221 35555555555555555544443
No 101
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=89.82 E-value=1.1 Score=33.37 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH------------HHHHH-hccCCCcchhhhhh
Q 043797 65 PDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ------------MMLAV-ANGLGFLPVQMVLE 119 (138)
Q Consensus 65 ~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~------------~~~~~-~~~~g~i~~~~~~~ 119 (138)
.+..++...++ +|+.+|.+.||+|++.|...+|.. ++..+ .|.+|.++..+..-
T Consensus 93 FsrkqIk~~~~-~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflL 159 (244)
T KOG0041|consen 93 FSRKQIKDAES-MFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLL 159 (244)
T ss_pred HHHHHHHHHHH-HHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHH
Confidence 34566666555 999999999999999999988753 22222 77889998776654
No 102
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=89.79 E-value=1.8 Score=37.83 Aligned_cols=87 Identities=24% Similarity=0.377 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 20 AFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 20 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
....++..+|+..|++.+|.++..+...++..+ + ..+....... +|+..+..+++.+...+|..+..
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-------n--~~l~~~~~~~----~f~e~~~~~~~k~~~~~~~~~~~ 199 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-------N--VQLSESKARR----LFKESDNSQTGKLEEEEFVKFRK 199 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHH-------H--HhhhHHHHHH----HHHHHHhhccceehHHHHHHHHH
Confidence 334688999999999999999999999999887 4 3344444333 67788888999999999988854
Q ss_pred H------HHHHH---hccCCCcchhhhhh
Q 043797 100 Q------MMLAV---ANGLGFLPVQMVLE 119 (138)
Q Consensus 100 ~------~~~~~---~~~~g~i~~~~~~~ 119 (138)
. +...| ..+.++.+...+.+
T Consensus 200 ~~~~rpev~~~f~~~s~~~~~ls~~~L~~ 228 (746)
T KOG0169|consen 200 ELTKRPEVYFLFVQYSHGKEYLSTDDLLR 228 (746)
T ss_pred hhccCchHHHHHHHHhCCCCccCHHHHHH
Confidence 2 22222 55577777766655
No 103
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=89.24 E-value=0.11 Score=34.77 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=28.6
Q ss_pred eeechhhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 043797 4 EVLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMK 47 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~ 47 (138)
++++.+.++.+..--......+...|+..|.|+||.||..|+..
T Consensus 69 ~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 69 GVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp SEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred CccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34556666655542233334678889999999999999999864
No 104
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=88.67 E-value=0.81 Score=36.60 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
..+.++|..+|.|.||.++.+|+..+-. ...| ..++..|...|...||.|+-.|+...+
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~l---------------dknE--~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIEL---------------DKNE--ACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhc---------------cCch--hHHHHHHhhhcccccCccccchhhhhh
Confidence 5678888888888888888888865421 1111 233446778888888888888886654
No 105
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.59 E-value=4.8 Score=25.92 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
+.++-+|+.+ .|++|.++...+..++...-.....+| +.++-..+....+.+|... .....|+.++|+.-+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vg--E~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVG--EGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT---GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhC--ccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 4566778877 688999999999999997644444445 4333222455555678776 3566799999988765
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=86.20 E-value=3.8 Score=36.66 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCH-HHHHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 043797 19 YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDP-DELARVYSSLFVQFDHDSNGTVDLEEFKAE 97 (138)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~-~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~ 97 (138)
.....+++..|.++|+...|..+.+++..++-.+ | .+..+ +++..-+..+....|.+.-|++++.+|...
T Consensus 743 Q~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-------g--~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~dd 813 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDGGAASPEELLRCLMSL-------G--YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDD 813 (890)
T ss_pred HHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhc-------C--cccchhHHHHHHHHHHHhccCcccccceeHHHHHhH
Confidence 4555789999999999999999999999999887 7 55544 333333333555666667799999999888
Q ss_pred HHH----------HHHHH---hccCCCcchhhhhh
Q 043797 98 TKQ----------MMLAV---ANGLGFLPVQMVLE 119 (138)
Q Consensus 98 l~~----------~~~~~---~~~~g~i~~~~~~~ 119 (138)
|.+ .+.+| .....++.++++..
T Consensus 814 l~R~~e~l~~~~r~i~s~~d~~ktk~~lL~eEL~~ 848 (890)
T KOG0035|consen 814 LEREYEDLDTELRAILAFEDWAKTKAYLLLEELVR 848 (890)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcchhHHHHHHHHh
Confidence 753 34444 22333566666655
No 107
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=85.12 E-value=7.6 Score=33.29 Aligned_cols=30 Identities=33% Similarity=0.383 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 043797 21 FNILIRERFAHLDTDNDGLLSHSEMMKELK 50 (138)
Q Consensus 21 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~ 50 (138)
-...+.++|+..|.|+||.++-.|+..+-+
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~ 222 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQK 222 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHH
Confidence 345788999999999999999999887755
No 108
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=84.98 E-value=3 Score=35.10 Aligned_cols=64 Identities=30% Similarity=0.365 Sum_probs=38.9
Q ss_pred HHHHHHHHhh-hhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 21 FNILIRERFA-HLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 21 ~~~~l~~~F~-~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
++..+.++.. .-|.-+||.||++|+..+= .+ . ..++. ++.-.|..+|+.+.|.+++++|..++.
T Consensus 71 ~n~~~v~Lla~iaD~tKDglisf~eF~afe-~~----------l-C~pDa---l~~~aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 71 FNDKIVRLLASIADQTKDGLISFQEFRAFE-SV----------L-CAPDA---LFEVAFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred CChHHHHHHHhhhhhcccccccHHHHHHHH-hh----------c-cCchH---HHHHHHHHhcccCCCceehHHHHHHHh
Confidence 3333333333 2356678888888886542 22 1 12222 222368888888888888888887765
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=83.98 E-value=3.9 Score=29.54 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=46.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
+.++.+|..|+..+.+.+|..|+..+++.-+...--+| +..+.-|.... |.. -.+.+|.++.++...++.
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~G--W~a~~~EW~~~----y~L-~~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFG--WFAAFFEWGAL----YIL-AKDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcch--hhhhhhHHHHH----HHH-HcCcCCcEeHHHHhhhcc
Confidence 57889999999988999999999999986311122223 33333343332 223 356789999998777653
No 110
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=82.40 E-value=1.5 Score=37.36 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=48.3
Q ss_pred HhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHH
Q 043797 15 VEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEF 94 (138)
Q Consensus 15 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF 94 (138)
.|-.+...+.+...|..||.|+||.++.+|+..+.+... +.|+.-+... . .--.+..|.+++..|
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P------~~pW~~~~~~-~--------~t~~~~~G~ltl~g~ 371 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP------GSPWTSSPYK-D--------STVKNERGWLTLNGF 371 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC------CCCCCCCccc-c--------cceecccceeehhhH
Confidence 344556668899999999999999999999999998761 2122111111 1 111236889999999
Q ss_pred HHHHH
Q 043797 95 KAETK 99 (138)
Q Consensus 95 ~~~l~ 99 (138)
...+.
T Consensus 372 l~~Ws 376 (625)
T KOG1707|consen 372 LSQWS 376 (625)
T ss_pred HHHHH
Confidence 88754
No 111
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=79.58 E-value=13 Score=24.35 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=39.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQM 101 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~ 101 (138)
..++.-|..+-. +|+++.++|..++ | ..-+.+-..+++..+-+.-... ...|+.+|+..++..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI----------G--M~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI----------G--MKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH----------T----S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc----------C--CcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 356666666655 8999999999887 7 3334555555555454444433 5789999988887654
No 112
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=77.84 E-value=5.7 Score=31.76 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=48.9
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 25 IRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 25 l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
++-.|++|+.+.||.+...++..+|+.. +| +..-.+.. +|+..+...+|+|++++|..++..
T Consensus 298 iq~afk~f~v~eDg~~ge~~ls~ilq~~------lg----v~~l~v~~----lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 298 IQYAFKRFSVAEDGISGEHILSLILQVV------LG----VEVLRVPV----LFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHh------cC----cceeeccc----cchhhhcccCcceeHHHHHHHHHh
Confidence 5678999999999999999998888753 25 33333333 688999999999999999998764
No 113
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.61 E-value=3.2 Score=28.21 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=27.3
Q ss_pred HhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 043797 15 VEDEYAFNILIRERFAHLDTDNDGLLSHSEMMK 47 (138)
Q Consensus 15 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~ 47 (138)
|.++.+++.-+..+.+.-|.|+||.|++.||..
T Consensus 109 l~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 109 LSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred CCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 345667777888899999999999999999854
No 114
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=74.66 E-value=3.4 Score=33.19 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 21 FNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 21 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
.-.++..||+.+=.++++......+...-+.+ . .++.+.= ...+.+||..+|.|.|+.++..|...+...
T Consensus 209 lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~-------d--~s~~p~C-Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld 278 (434)
T KOG3555|consen 209 LGNRLRDWFKALHEDSSQNDKTSSLHSAASGF-------D--TSILPIC-KDSLGWMFNKLDTNYDLLLDQSELRAIELD 278 (434)
T ss_pred HHHHHHHHHHHHHhhhhccCcchhhccccccc-------c--cccCcch-hhhhhhhhhccccccccccCHHHhhhhhcc
Confidence 34678899998877777666665555443222 1 2222111 113457999999999999999999888542
Q ss_pred ----HHHHH-----hccCCCcchhh
Q 043797 101 ----MMLAV-----ANGLGFLPVQM 116 (138)
Q Consensus 101 ----~~~~~-----~~~~g~i~~~~ 116 (138)
-.+.| ...||.|+..+
T Consensus 279 knE~CikpFfnsCD~~kDg~iS~~E 303 (434)
T KOG3555|consen 279 KNEACIKPFFNSCDTYKDGSISTNE 303 (434)
T ss_pred CchhHHHHHHhhhcccccCccccch
Confidence 22333 34578887655
No 115
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=72.90 E-value=12 Score=35.75 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=47.1
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 24 LIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 24 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
.++......||+.+|+|+.+++..+|-+- .-- .-.+..++.. -|+.++. +..+|+.++...-|.+
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~-----ETe--NI~s~~eIE~----AfraL~a-~~~yvtke~~~~~ltr 2361 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISK-----ETE--NILSSEEIED----AFRALDA-GKPYVTKEELYQNLTR 2361 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhc-----ccc--cccchHHHHH----HHHHhhc-CCccccHHHHHhcCCH
Confidence 56677889999999999999999988642 001 2234556665 6778887 7788998887665543
No 116
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.48 E-value=3.6 Score=34.62 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred eeechhhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhH
Q 043797 4 EVLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCL 52 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 52 (138)
+.+-||+-+.|.+++.--+.++.++|...|.+.||.++..||..++.-+
T Consensus 246 gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 246 GFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred cccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 3467888899999998888999999999999999999999998877644
No 117
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=72.23 E-value=7.3 Score=20.03 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=19.6
Q ss_pred CCCCccHHHHHHHHHHHHHHHhccCCCcc
Q 043797 85 SNGTVDLEEFKAETKQMMLAVANGLGFLP 113 (138)
Q Consensus 85 ~dg~Is~~eF~~~l~~~~~~~~~~~g~i~ 113 (138)
+.|.|++++++.+..++. .|.+..|..|
T Consensus 1 ~~~~i~~~~~~d~a~rv~-~f~~~ngRlP 28 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRVN-NFYESNGRLP 28 (33)
T ss_pred CCceecHHHHHHHHHHHH-HHHHHcCCCC
Confidence 357899999999988776 4544445443
No 118
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=71.73 E-value=29 Score=23.63 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.3
Q ss_pred HHHHHhhhhcCC--CCCcccHHHHHHHHHhH-HhhhhhhCCCCCCC------HHHHHHHHHHHHHhhCCCCCCCccHHHH
Q 043797 24 LIRERFAHLDTD--NDGLLSHSEMMKELKCL-RVFETHFGIDEKPD------PDELARVYSSLFVQFDHDSNGTVDLEEF 94 (138)
Q Consensus 24 ~l~~~F~~~D~d--~~G~Is~~el~~~l~~~-~~~~~~~g~~~~~~------~~e~~~~~~~~~~~~d~~~dg~Is~~eF 94 (138)
.+...|+....+ ++..++..++..++..+ ....+..+ .... +..++-.+++++..+|.+++|.|+.-.|
T Consensus 42 ~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p--~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 42 NVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLP--TLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHST--TS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 455677766543 35679999999999976 12222222 2121 2556667888899999999999998888
Q ss_pred HHHH
Q 043797 95 KAET 98 (138)
Q Consensus 95 ~~~l 98 (138)
...+
T Consensus 120 KvaL 123 (127)
T PF09068_consen 120 KVAL 123 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 119
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.46 E-value=25 Score=24.67 Aligned_cols=67 Identities=24% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 19 YAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
|.+.... -+|+... -||.++..|...+-.-+ ...|| ++..++..++. ....-+...+++..|...+
T Consensus 27 P~lAa~~-Llf~Vm~--ADG~v~~~E~~a~r~il---~~~f~----i~~~~l~ali~----~~e~~~~Ea~d~y~fts~l 92 (148)
T COG4103 27 PRLAAAA-LLFHVME--ADGTVSESEREAFRAIL---KENFG----IDGEELDALIE----AGEEAGYEAIDLYSFTSVL 92 (148)
T ss_pred HHHHHHH-HHHHHHh--cccCcCHHHHHHHHHHH---HHHcC----CCHHHHHHHHH----HHHHhhHHHHHHHHHHHHH
Confidence 4444444 5666664 46678988887765443 34445 77888887443 5544456678889998887
Q ss_pred H
Q 043797 99 K 99 (138)
Q Consensus 99 ~ 99 (138)
+
T Consensus 93 ~ 93 (148)
T COG4103 93 K 93 (148)
T ss_pred H
Confidence 6
No 120
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=66.37 E-value=8.3 Score=33.35 Aligned_cols=58 Identities=28% Similarity=0.450 Sum_probs=42.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEF 94 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF 94 (138)
..+.++|+.+|.+.+|.++..++...+..+ . ..+.+.+ ++=+|+.+|.+++ ..+.++-
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l-------~-----~~~~~ek-~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSIL-------K-----AGDALEK-LKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHH-------H-----hhhHHHH-HHHHHhhccCCcc-ccccccc
Confidence 457899999999999999999999998876 1 1122222 2226888988887 6666655
No 121
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.72 E-value=5.6 Score=32.25 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=45.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 043797 22 NILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAE 97 (138)
Q Consensus 22 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~ 97 (138)
...+++.|+.+|+.+.|+|+.+-++.++... + ...++.+.-.+ +=+..|..+-|.|-.++|..-
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-------N--~~vse~a~v~l---~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTAL-------N--RLVSEPAYVML---MRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHh-------c--ccccCHHHHHH---hcCccChhhcceEEecccccc
Confidence 4678999999999999999999999998876 4 23333333222 334667777777766665443
No 122
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=61.10 E-value=11 Score=23.06 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=22.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKEL 49 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l 49 (138)
+.+...|+.+ .+++++|+..||+..|
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 4577899999 7888999999998865
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.97 E-value=52 Score=29.57 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=44.3
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 043797 27 ERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMML 103 (138)
Q Consensus 27 ~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~~ 103 (138)
..|..+ +.+.|+|+-..-+.++-.- | ++..-+. ++|...|.|.||.++..||--.|+-+..
T Consensus 20 ~qF~~L-kp~~gfitg~qArnfflqS-------~----LP~~VLa----qIWALsDldkDGrmdi~EfSIAmkLi~l 80 (1118)
T KOG1029|consen 20 AQFGQL-KPGQGFITGDQARNFFLQS-------G----LPTPVLA----QIWALSDLDKDGRMDIREFSIAMKLIKL 80 (1118)
T ss_pred HHHhcc-CCCCCccchHhhhhhHHhc-------C----CChHHHH----HHHHhhhcCccccchHHHHHHHHHHHHH
Confidence 444444 3567999999998887654 5 3444333 5888999999999999999777765443
No 124
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=58.03 E-value=46 Score=21.08 Aligned_cols=71 Identities=25% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH------------HHH
Q 043797 36 NDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ------------MML 103 (138)
Q Consensus 36 ~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~------------~~~ 103 (138)
.||.++..|...+-..+ ...++ .++.+...++. .+........++.+|...+.. .+.
T Consensus 12 aDG~v~~~E~~~i~~~l---~~~~~----l~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~ 80 (104)
T cd07313 12 ADGEYDEEERAAIDRLL---AERFG----LDAEEAAELLA----EAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALW 80 (104)
T ss_pred HcCCCCHHHHHHHHHHH---HHHhC----cCHHHHHHHHH----HHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 38899999987766544 33345 45666665443 333333444667777766542 222
Q ss_pred HHhccCCCcchhhh
Q 043797 104 AVANGLGFLPVQMV 117 (138)
Q Consensus 104 ~~~~~~g~i~~~~~ 117 (138)
.+.--||.++..+.
T Consensus 81 ~vA~ADG~~~~~E~ 94 (104)
T cd07313 81 EVAYADGELDEYEE 94 (104)
T ss_pred HHHHhcCCCCHHHH
Confidence 22556677765554
No 125
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=53.83 E-value=34 Score=20.96 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=13.9
Q ss_pred CCCcccHHHHHHHHHhH
Q 043797 36 NDGLLSHSEMMKELKCL 52 (138)
Q Consensus 36 ~~G~Is~~el~~~l~~~ 52 (138)
..|++..+||..++...
T Consensus 27 ~~Gkv~~ee~n~~~e~~ 43 (75)
T TIGR02675 27 ASGKLRGEEINSLLEAL 43 (75)
T ss_pred HcCcccHHHHHHHHHHh
Confidence 47899999999888654
No 126
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=53.27 E-value=24 Score=16.36 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=12.8
Q ss_pred cCCCCCcccHHHHHHHH
Q 043797 33 DTDNDGLLSHSEMMKEL 49 (138)
Q Consensus 33 D~d~~G~Is~~el~~~l 49 (138)
|.|++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 57899999988886543
No 127
>PLN02230 phosphoinositide phospholipase C 4
Probab=52.57 E-value=1.2e+02 Score=26.40 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=45.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhC---CCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFD---HDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d---~~~dg~Is~~eF~~~l~ 99 (138)
.++..+|..|-.++ +.++.++|..+|.... +-+...+.++...++.++.+... .-+.+.++.+.|..++.
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEG------GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhC------CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 57889999995444 7999999999998751 21112344555554444433322 22355799999999875
No 128
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.95 E-value=56 Score=22.42 Aligned_cols=43 Identities=23% Similarity=0.446 Sum_probs=34.6
Q ss_pred CCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 043797 36 NDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGT 88 (138)
Q Consensus 36 ~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~ 88 (138)
..|.||.+|-.+.| ++......+++..-|..+|..=|....|.
T Consensus 52 ~~~~iTlqEa~qIL----------nV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 52 SNGKITLQEAQQIL----------NVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccccccHHHHhhHh----------CCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 34779999988887 65467789999999999999988886664
No 129
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.93 E-value=8.3 Score=34.55 Aligned_cols=65 Identities=25% Similarity=0.373 Sum_probs=50.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMM 102 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~ 102 (138)
..+..+|...|.+++|.|+-.+....+... | .+...+.. +|...|..++|.+++.+|.-.+..+.
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~-------g----l~~~~l~~----~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPF-------G----LSKPRLAH----VWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccC-------C----CChhhhhh----hhhhcchhccCcccccccchhhhhhh
Confidence 345568999999999999999988776443 5 45555555 77799999999999998877765433
No 130
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=49.55 E-value=20 Score=24.45 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=21.3
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 043797 24 LIRERFAHLDTDNDGLLSHSEMMKELKC 51 (138)
Q Consensus 24 ~l~~~F~~~D~d~~G~Is~~el~~~l~~ 51 (138)
.+.+++..||++++|.|+.-.++.++..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4678889999999999999999988754
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=48.55 E-value=76 Score=27.51 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=37.8
Q ss_pred CCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 36 NDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 36 ~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
+.|.++..++..+.+.+ ......+..++.. +|..+.. +.+.++.++|..++..
T Consensus 13 ~~g~l~f~~f~~f~~~~-------k~~~~~~r~ei~~----lf~~~~~-~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKF-------KITEAEPPDDVKD----VFCKFSV-GGGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHh-------ccccCCChHHHHH----HHHHHhC-CCCccCHHHHHHHHHH
Confidence 46899999998887765 2002235778776 6667754 3468999999999864
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=48.26 E-value=1.7e+02 Score=25.49 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=44.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhC---CCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFD---HDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d---~~~dg~Is~~eF~~~l~ 99 (138)
.++..+|..|-.++ +.++.++|..+|.... + ....+.++...++..++.... ..+.+.++++.|..++.
T Consensus 38 ~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q------~-e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 38 DDVKDVFCKFSVGG-GHMGADQLRRFLVLHQ------D-ELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhC------C-CcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 47888999886443 6899999999998751 3 012445555555444443322 12345689999998875
No 133
>PLN02223 phosphoinositide phospholipase C
Probab=47.36 E-value=1.3e+02 Score=25.78 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=47.8
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhC----CCCCCCccHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFD----HDSNGTVDLEEFKAET 98 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d----~~~dg~Is~~eF~~~l 98 (138)
..+..+|..|- .+.|..+.+.+.+++.-+. ..-| ....+.++...++.+++.... ....+.++.+.|..++
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~---~~q~-e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLD---TEKD-EDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHH---Hhcc-cccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 46788888884 6678899999999984331 1113 124556677777776665542 1223669999999887
Q ss_pred H
Q 043797 99 K 99 (138)
Q Consensus 99 ~ 99 (138)
.
T Consensus 91 ~ 91 (537)
T PLN02223 91 F 91 (537)
T ss_pred c
Confidence 4
No 134
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.48 E-value=67 Score=27.97 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=55.4
Q ss_pred hcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHH
Q 043797 16 EDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFK 95 (138)
Q Consensus 16 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~ 95 (138)
-.-+.++..++..|.++|. .+|.++.+++..++......+. . .............++...|.+..|++..+++.
T Consensus 11 ~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 84 (646)
T KOG0039|consen 11 ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-L----SLIKKQTEEYAALIMEELDPDHKGYITNEDLE 84 (646)
T ss_pred ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-h----hhhhhhhhHHHHHhhhhccccccceeeecchh
Confidence 3345667889999999998 9999999999999886522221 1 12223333334457888988888899988888
Q ss_pred HHHHH
Q 043797 96 AETKQ 100 (138)
Q Consensus 96 ~~l~~ 100 (138)
.++..
T Consensus 85 ~ll~~ 89 (646)
T KOG0039|consen 85 ILLLQ 89 (646)
T ss_pred HHHHh
Confidence 77764
No 135
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=45.54 E-value=52 Score=22.85 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCC-------CCCCCccHHHHHHHHHH
Q 043797 37 DGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDH-------DSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 37 ~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~-------~~dg~Is~~eF~~~l~~ 100 (138)
-+.+|..||.++-+-+ .+ +.-.+.. +++.+.. +..+.|+|+.|..+|+.
T Consensus 5 ~~~lsp~eF~qLq~y~-----ey------s~kklkd----vl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS-----EY------STKKLKD----VLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp -S-S-HHHHHHHHHHH-----HH----------HHH----HHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHH-----HH------HHHHHHH----HHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 4678899998865533 11 1223444 4334422 23558999999998863
No 136
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=45.16 E-value=22 Score=28.56 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=35.0
Q ss_pred eechhhHH---HHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 043797 5 VLDGATIV---SFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKC 51 (138)
Q Consensus 5 ~~~~~~~~---~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 51 (138)
+++.+.++ .+|..-.......+..|+-.|.|+|-.||..||...|..
T Consensus 349 ~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 349 DIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred ccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34444444 455555556677888999999999999999999988843
No 137
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=44.43 E-value=1.7e+02 Score=24.85 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=45.9
Q ss_pred HHHHHhcHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhHHh----hhhhhCCCCCCCHHHHHHHHHHH
Q 043797 11 IVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRV----FETHFGIDEKPDPDELARVYSSL 77 (138)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~----~~~~~g~~~~~~~~e~~~~~~~~ 77 (138)
|-.+|+=..++...+.-+|+..|.++-=.|+..|++.++..+.. ....|| +++..-+..+.+.+
T Consensus 116 LsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~~~e~~~~yG---~is~aS~gaI~R~l 183 (502)
T PF05872_consen 116 LSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSENAKELSAEYG---NISSASIGAIQRAL 183 (502)
T ss_pred HHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhhHHHHHHHcC---CccHHHHHHHHHHH
Confidence 44677777888889999999999988888999999999987621 334444 35555555554444
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=43.67 E-value=1.2e+02 Score=26.08 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=42.5
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCC-CCHHHHHHHHHHHHHhhCCC----CCCCccHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEK-PDPDELARVYSSLFVQFDHD----SNGTVDLEEFKAE 97 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~d~~----~dg~Is~~eF~~~ 97 (138)
.++..+|..|-. ++.++.+++..+|.... | .. .+.+.... ++..+... ..|.++.+.|..+
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q------~--~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~gF~~y 89 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQ------G--ERHAGLDYVQD----IFHSVKHHNVFHHHGLVHLNAFYRY 89 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhc------C--CccCCHHHHHH----HHHHhccchhhcccCccCHHHHHHH
Confidence 467888888854 35899999999998751 3 22 23333333 55565432 3467999999988
Q ss_pred HHH
Q 043797 98 TKQ 100 (138)
Q Consensus 98 l~~ 100 (138)
+..
T Consensus 90 l~s 92 (567)
T PLN02228 90 LFS 92 (567)
T ss_pred hcC
Confidence 853
No 139
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=43.65 E-value=1.9e+02 Score=28.58 Aligned_cols=22 Identities=23% Similarity=0.619 Sum_probs=20.3
Q ss_pred HHhhCCCCCCCccHHHHHHHHH
Q 043797 78 FVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 78 ~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
|+.+|.+|.|.|+..+|.+.|.
T Consensus 4063 fkeydpdgkgiiskkdf~kame 4084 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAME 4084 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHh
Confidence 8899999999999999988874
No 140
>PRK04387 hypothetical protein; Provisional
Probab=41.62 E-value=68 Score=20.65 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH-------------HHHHHhccCCCcchhhhhh
Q 043797 63 EKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ-------------MMLAVANGLGFLPVQMVLE 119 (138)
Q Consensus 63 ~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~-------------~~~~~~~~~g~i~~~~~~~ 119 (138)
..++.+|+-.++. .|.....--...|..++|+...++ +...|....|+-+-.-++.
T Consensus 9 ~dWsteEii~Vi~-F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe~~SGYS~Y~~Vk~ 77 (90)
T PRK04387 9 LDWSTEEMISVLH-FFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEKVSGYSIYRAVQK 77 (90)
T ss_pred CCCCHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 5677777766554 555444333345667777666543 5556666677766655554
No 141
>PRK00523 hypothetical protein; Provisional
Probab=40.92 E-value=78 Score=19.51 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHH
Q 043797 39 LLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSS 76 (138)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~ 76 (138)
-|+.+-++.++.++ | ..+++..+..+++.
T Consensus 39 pine~mir~M~~QM-------G--qKPSekki~Q~m~~ 67 (72)
T PRK00523 39 PITENMIRAMYMQM-------G--RKPSESQIKQVMRS 67 (72)
T ss_pred CCCHHHHHHHHHHh-------C--CCccHHHHHHHHHH
Confidence 68999999999998 9 99999999986663
No 142
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=40.52 E-value=82 Score=18.94 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=25.6
Q ss_pred CcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHH
Q 043797 38 GLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSS 76 (138)
Q Consensus 38 G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~ 76 (138)
--|+.+-++.++..+ | ..+++..+..+++.
T Consensus 30 Ppine~mir~M~~QM-------G--~kpSekqi~Q~m~~ 59 (64)
T PF03672_consen 30 PPINEKMIRAMMMQM-------G--RKPSEKQIKQMMRS 59 (64)
T ss_pred CCCCHHHHHHHHHHh-------C--CCccHHHHHHHHHH
Confidence 368999999999998 9 99999999886653
No 143
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=40.18 E-value=99 Score=24.82 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=22.3
Q ss_pred HHhhCCCCCCCccHHHHHHHHHHHHHHH
Q 043797 78 FVQFDHDSNGTVDLEEFKAETKQMMLAV 105 (138)
Q Consensus 78 ~~~~d~~~dg~Is~~eF~~~l~~~~~~~ 105 (138)
|..+|.|+||.++-.+.-+++..-++.+
T Consensus 250 F~LHD~NsDGfldeqELEaLFtkELEKv 277 (442)
T KOG3866|consen 250 FALHDLNSDGFLDEQELEALFTKELEKV 277 (442)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHh
Confidence 8899999999999999888876433333
No 144
>PLN02222 phosphoinositide phospholipase C 2
Probab=39.55 E-value=1.7e+02 Score=25.40 Aligned_cols=65 Identities=11% Similarity=0.161 Sum_probs=42.8
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCC-CCCCCccHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDH-DSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~-~~dg~Is~~eF~~~l~~ 100 (138)
.++..+|..|-. ++.++.+++..+|.... | ....+.+.... ++..+.. ...+.++++.|..+|..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q------~-~~~~~~~~~~~----ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQ------K-QDKATREDAQS----IINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhc------C-CccCCHHHHHH----HHHhhhhhhhccCcCHHHHHHHhcC
Confidence 378888888853 47999999999998751 3 01234444444 4444321 23567999999998753
No 145
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=38.66 E-value=56 Score=22.85 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=27.9
Q ss_pred hhHHHHHhcHHHHHHHHHHHhhhhcCCCCCcc
Q 043797 9 ATIVSFVEDEYAFNILIRERFAHLDTDNDGLL 40 (138)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 40 (138)
+.|..|++....+...+..+|..++.+..|.-
T Consensus 36 ~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 36 EAFESHLEETEGQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccCc
Confidence 46889999999999999999999998877653
No 146
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=38.55 E-value=1.2e+02 Score=20.37 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 043797 60 GIDEKPDPDELARVYSSLFVQFDHDSNG 87 (138)
Q Consensus 60 g~~~~~~~~e~~~~~~~~~~~~d~~~dg 87 (138)
|++...+.+++.+.|+++...+..|..|
T Consensus 72 Gv~~~As~~eIkkaYRrLa~~~HPDkgG 99 (116)
T PTZ00100 72 NISPTASKERIREAHKQLMLRNHPDNGG 99 (116)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 7767788889998888888888777654
No 147
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.72 E-value=28 Score=31.34 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=51.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMM 102 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~ 102 (138)
..+...|+..|+..+|.|+..+-..++..- | +....+. ++|...|..+.|.++...|...++.+.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s-------~----L~~qvl~----qiws~~d~~~~g~l~~q~f~~~lrlva 75 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS-------G----LPDQVLG----QIWSLADSSGKGFLNRQGFYAALRLVA 75 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc-------c----cchhhhh----ccccccccccCCccccccccccchHhh
Confidence 456789999999999999999998888764 5 2333333 377799999999999999988877544
Q ss_pred HH
Q 043797 103 LA 104 (138)
Q Consensus 103 ~~ 104 (138)
.+
T Consensus 76 ~a 77 (847)
T KOG0998|consen 76 QA 77 (847)
T ss_pred hh
Confidence 43
No 148
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=36.40 E-value=1.6e+02 Score=25.10 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=52.9
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCC----C-CCCCccHHHHHHHHHH--
Q 043797 28 RFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDH----D-SNGTVDLEEFKAETKQ-- 100 (138)
Q Consensus 28 ~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~----~-~dg~Is~~eF~~~l~~-- 100 (138)
+|..|-....+.++..-|..+|++. | ...+.+.+..++. .++.++. + ..+.++.+-|...+..
T Consensus 91 LFyLiaegq~ekipihKFiTALkst-------G--LrtsDPRLk~mMd-~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI 160 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKST-------G--LRTSDPRLKDMMD-EMKDVDQEENESSSGWLLDKDLFKKCIFSSI 160 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHc-------C--CCcCCchHHHHHH-HHHHHHhhhcccccceeecHHHHHHhhccch
Confidence 4444544457899999999999988 8 7777788887776 5566664 2 3456899999888642
Q ss_pred --HHHHHhccCCCcchhhhh
Q 043797 101 --MMLAVANGLGFLPVQMVL 118 (138)
Q Consensus 101 --~~~~~~~~~g~i~~~~~~ 118 (138)
+-++++.+.-.-+|.+..
T Consensus 161 ~lvSqALrkqmVIPdw~~Ft 180 (622)
T KOG0506|consen 161 VLVSQALRKQMVIPDWEEFT 180 (622)
T ss_pred hHHHHHHhcCccCCcHHHHH
Confidence 334444444444444443
No 149
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=34.76 E-value=87 Score=18.43 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHH
Q 043797 39 LLSHSEMMKELKCLRVFETHFGIDEKPDPDELAR 72 (138)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~ 72 (138)
.|+.++|..+|+.. . .++++.++.+
T Consensus 29 ~it~~DF~~Al~~~-------k--pSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKV-------K--PSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTC-------G--GSS-HHHHHH
T ss_pred CCCHHHHHHHHHHc-------C--CCCCHHHHHH
Confidence 48899999999887 5 7888998886
No 150
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=34.43 E-value=23 Score=26.45 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKEL 49 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l 49 (138)
..+.+.|...|.|+||+|+..||...+
T Consensus 222 ~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 222 HCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred hhchhhhhcccCCCCCceeHHHhhccc
Confidence 356678888999999999999998765
No 151
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=34.02 E-value=44 Score=22.63 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 65 PDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 65 ~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
+++++.+. +|..+-.|..|.|.|.||+.-+.
T Consensus 4 LtDeQFdr----LW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDR----LWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHH----HHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhh----hhhhCcCCccCCEeHHHHHHHcc
Confidence 35566555 78899999999999999987754
No 152
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=33.05 E-value=88 Score=17.06 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=21.5
Q ss_pred HHHHHHhhhhc-C-CCCCcccHHHHHHHHHh
Q 043797 23 ILIRERFAHLD-T-DNDGLLSHSEMMKELKC 51 (138)
Q Consensus 23 ~~l~~~F~~~D-~-d~~G~Is~~el~~~l~~ 51 (138)
..+-.+|..|- . .....++..|++.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 35667787775 2 33578999999999975
No 153
>PRK01844 hypothetical protein; Provisional
Probab=33.03 E-value=1.2e+02 Score=18.67 Aligned_cols=30 Identities=13% Similarity=0.361 Sum_probs=25.7
Q ss_pred cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHH
Q 043797 39 LLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSL 77 (138)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~ 77 (138)
-|+.+-++.++.++ | ..+++..+..+++.+
T Consensus 38 pine~mir~Mm~QM-------G--qkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQM-------G--QKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHh-------C--CCccHHHHHHHHHHH
Confidence 68999999999998 9 999999999876633
No 154
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=31.84 E-value=2e+02 Score=23.19 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=60.9
Q ss_pred CCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH-HHHhccCCCcc
Q 043797 35 DNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMM-LAVANGLGFLP 113 (138)
Q Consensus 35 d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~~~-~~~~~~~g~i~ 113 (138)
+..|.+....|......+ ..| | +.++++....+++..+.+ +-+++++-+-.||..++-+.+ +....+-..-+
T Consensus 116 g~~g~~~~k~F~~l~~~~---~~H-g-~~sis~~nF~~i~~~~n~--~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~ 188 (415)
T COG5533 116 GKPGSNAFKQFIALYETP---GCH-G-PKSISPRNFIDILSGRNK--LFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSP 188 (415)
T ss_pred CCcchhHHHHHHHHHhcc---ccC-C-CcccchHHHHHHHccccc--cccccchhhHHHHHHHHHHHHHhhhcCCccccc
Confidence 345777777777666554 111 2 345566555554432222 235778999999999877655 44444555668
Q ss_pred hhhhhhcchHHHHHhhcccccc
Q 043797 114 VQMVLEEDSILKKVVEKESTAK 135 (138)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~ 135 (138)
+.++.++...+++.++-.++..
T Consensus 189 i~~l~de~e~~Reel~l~~~S~ 210 (415)
T COG5533 189 ILELKDEFEEVREELPLSHFSH 210 (415)
T ss_pred ccccchHHHHHHhhcCcchhhh
Confidence 8999999999999887776654
No 155
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.59 E-value=1.3e+02 Score=18.49 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=30.4
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHH
Q 043797 27 ERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLF 78 (138)
Q Consensus 27 ~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~ 78 (138)
+.+..+=+++ =.|+.+-++.++..+ | ..+++..+..+++++.
T Consensus 27 k~~~k~lk~N-Ppine~~iR~M~~qm-------G--qKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 27 KQMKKQLKDN-PPINEEMIRMMMAQM-------G--QKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHhhC-CCCCHHHHHHHHHHh-------C--CCchHHHHHHHHHHHH
Confidence 3344333333 368999999999998 8 8999999998776543
No 156
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=30.76 E-value=44 Score=20.12 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=19.7
Q ss_pred hhhcCCCCCcccHHHHHHHHHh
Q 043797 30 AHLDTDNDGLLSHSEMMKELKC 51 (138)
Q Consensus 30 ~~~D~d~~G~Is~~el~~~l~~ 51 (138)
+.||+..+.+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999999876
No 157
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=30.51 E-value=1.5e+02 Score=19.10 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 43 SEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 43 ~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
..+++++..+. .++ .+.++.++....+.++..+ -+|.|+-+||..-+.+
T Consensus 3 ~K~k~FL~tLi----~ls--~~~~qpe~~~~Vr~LV~~L---~~~~i~~EeF~~~Lq~ 51 (92)
T smart00549 3 SKCKRFLTTLI----QLS--NDISQPEVAERVRTLVLGL---VNGTITAEEFTSRLQE 51 (92)
T ss_pred HHHHHHHHHHH----HHh--cCCCcchHHHHHHHHHHHH---HhCCCCHHHHHHHHHH
Confidence 34556665542 223 4444456666555565555 3678999999887765
No 158
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=30.12 E-value=2e+02 Score=20.22 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=29.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDE 69 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e 69 (138)
..+.......|.++.+++|.++++.++-.+ .+.|+ ..++-++
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~i---~q~l~--~~~P~Ee 110 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQI---QQSLN--QSVPLEE 110 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHH---HHHhc--CCCCHHH
Confidence 344555567788888889999999998876 44444 4455444
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=28.65 E-value=92 Score=19.21 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=17.8
Q ss_pred CCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHH
Q 043797 36 NDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYS 75 (138)
Q Consensus 36 ~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~ 75 (138)
..|+||++++..+|.. ...++..+..++.
T Consensus 18 ~~G~lT~~eI~~~L~~-----------~~~~~e~id~i~~ 46 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE-----------DDLDPEQIDEIYD 46 (82)
T ss_dssp HHSS-BHHHHHHH-S------------S---HHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCc-----------cCCCHHHHHHHHH
Confidence 4789999999998843 3367788887554
No 160
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=28.02 E-value=1.7e+02 Score=18.67 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=32.3
Q ss_pred CCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 37 DGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 37 ~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
.-.|++.+++..+... .+ .. +..+... +=...|.-.+++||--||--..+
T Consensus 20 r~IVPW~~F~~~L~~~------h~--~~-~~~~~~a----Lk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKV------HP--IS-SGLEAMA----LKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SEEEHHHHHHHHHHH------S----S-SHHHHHH----HHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHh------cC--CC-chHHHHH----HHHHHhcccCCccchhhhHHHHH
Confidence 3569999999999876 12 22 2233232 44589999999999888765544
No 161
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=27.90 E-value=82 Score=19.16 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.5
Q ss_pred CCCCccHHHHHHHHHHHH
Q 043797 85 SNGTVDLEEFKAETKQMM 102 (138)
Q Consensus 85 ~dg~Is~~eF~~~l~~~~ 102 (138)
..+.|+.++|+..++.+.
T Consensus 38 k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 38 KKKKISREEFVRKLRQIV 55 (70)
T ss_pred HHCCCCHHHHHHHHHHHH
Confidence 467899999999987543
No 162
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=27.86 E-value=1e+02 Score=19.70 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHH-------------HHHHHhccCCCcchhhhhh
Q 043797 63 EKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQ-------------MMLAVANGLGFLPVQMVLE 119 (138)
Q Consensus 63 ~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~~-------------~~~~~~~~~g~i~~~~~~~ 119 (138)
..++.+|+-.+++ .|.....-=.+.|+.++|+...++ +...|....|+-+..-++.
T Consensus 9 ~dWsteEii~Vi~-F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~~SGYs~Y~~vK~ 77 (88)
T PF05256_consen 9 PDWSTEEIIDVIN-FFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFEEQSGYSIYRVVKQ 77 (88)
T ss_dssp ----HHHHHHHHH-HHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHHCCSS--HHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4566666666544 444433322345666666666543 5556666777665555543
No 163
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=27.63 E-value=2.8e+02 Score=22.06 Aligned_cols=84 Identities=10% Similarity=0.152 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHhhhhcCC---------CCCcccHHHHHHHHHhHHhhh---hhh--CCC-CCCCHHHHHHHHHHHHHhh
Q 043797 17 DEYAFNILIRERFAHLDTD---------NDGLLSHSEMMKELKCLRVFE---THF--GID-EKPDPDELARVYSSLFVQF 81 (138)
Q Consensus 17 ~~~~~~~~l~~~F~~~D~d---------~~G~Is~~el~~~l~~~~~~~---~~~--g~~-~~~~~~e~~~~~~~~~~~~ 81 (138)
...++-+....+|..|++. ++-.++...|.+++-++++.. ... .+| ..+++.++..+.+..+..-
T Consensus 186 s~~eL~~~~leLf~~yn~~khl~lm~~L~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~ 265 (323)
T PF12987_consen 186 STQELYRKVLELFQNYNPAKHLHLMQTLGDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDE 265 (323)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCc
Confidence 3344445667788888765 567899999999988764322 000 123 2456778887777665544
Q ss_pred CCC-CCCCccHHHHHHHHHH
Q 043797 82 DHD-SNGTVDLEEFKAETKQ 100 (138)
Q Consensus 82 d~~-~dg~Is~~eF~~~l~~ 100 (138)
+.. .++.|+...|.+++..
T Consensus 266 nF~~~~~~Is~W~~ynLlT~ 285 (323)
T PF12987_consen 266 NFGRKGGEISMWNFYNLLTG 285 (323)
T ss_pred ccccCCCcccHHHHHHHHhc
Confidence 333 2778999999998753
No 164
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.55 E-value=43 Score=32.37 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 043797 23 ILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETK 99 (138)
Q Consensus 23 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l~ 99 (138)
+.+.++|..||++..|+|...++..+++.+ ..-++++. ..+. +. +--..-...+|.+++.+-..++.
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L---~ppL~~~k--~~~~--kl---i~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSL---DPPLDLGK--PNKR--KL---ISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhc---CCccccCC--CCCc--ee---eeeecCcCCCCeeehhhHHHHHH
Confidence 577899999999999999999999999987 22222211 1111 11 11123344788899887776664
No 165
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.98 E-value=1.1e+02 Score=25.42 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=31.6
Q ss_pred CCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHH
Q 043797 37 DGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKA 96 (138)
Q Consensus 37 ~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~ 96 (138)
+|+||-..-+..|... ..++.-+.+ +|+..|.+.||.++-+||.-
T Consensus 457 ~gk~sg~~ak~~mv~s-----------klpnsvlgk----iwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMVKS-----------KLPNSVLGK----IWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CceeccchhHHHHHhc-----------cCchhHHHh----hhhhhcCCcccCcCHHHHHH
Confidence 5777766665555432 244555554 78899999999999999953
No 166
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=26.94 E-value=1.4e+02 Score=17.44 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=21.4
Q ss_pred cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHH
Q 043797 39 LLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYS 75 (138)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~ 75 (138)
.+|.+|+...+..+ + ..++..++-.++.
T Consensus 9 ~lTeEEl~~~i~~L-------~--~~~~~~dm~~IW~ 36 (61)
T TIGR01639 9 KLSKEELNELINSL-------D--EIPNRNDMLIIWN 36 (61)
T ss_pred HccHHHHHHHHHhh-------c--CCCCHHHHHHHHH
Confidence 47888888888887 6 7788887776544
No 167
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=26.94 E-value=1.4e+02 Score=23.02 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=36.0
Q ss_pred CCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHH
Q 043797 37 DGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKA 96 (138)
Q Consensus 37 ~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~ 96 (138)
.-.++|.++..+|+.- +....| ..++++.+.-+...++..-....+..|++..|.+
T Consensus 176 p~~v~W~ql~~~L~~~--F~~~~~--R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 176 PPKVPWPQLSEALSWQ--FSSETG--RGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp -SEEEHHHHHHHHHHH--HHHHSS------HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CCcccHHHHHHHHHHH--HHHhhC--CCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 3568899999999863 345556 6688888887666666665555678899988843
No 168
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=26.87 E-value=1.3e+02 Score=17.03 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=25.0
Q ss_pred hCCCCCCCHHHHHHHHHHHHHhhCCCCCCCcc
Q 043797 59 FGIDEKPDPDELARVYSSLFVQFDHDSNGTVD 90 (138)
Q Consensus 59 ~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is 90 (138)
+|++...+..++...|.++.+.+..+..+..+
T Consensus 6 Lgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~ 37 (64)
T PF00226_consen 6 LGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE 37 (64)
T ss_dssp CTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH
T ss_pred CCCCCCCCHHHHHHHHHhhhhccccccchhhh
Confidence 37777888999999999888888887655544
No 169
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=23.77 E-value=1.9e+02 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 043797 73 VYSSLFVQFDHDSNGTVDLEEFKAETKQ 100 (138)
Q Consensus 73 ~~~~~~~~~d~~~dg~Is~~eF~~~l~~ 100 (138)
+...+|+.+|.+.+|-|+|.+++.-+..
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~ 583 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSI 583 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHH
Confidence 4445899999999999999999988753
No 170
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=23.29 E-value=1.2e+02 Score=15.47 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHH
Q 043797 39 LLSHSEMMKELKCLRVFETHFGIDEKPDPDELAR 72 (138)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~ 72 (138)
.++..|++..|+.. |+|.+-+..++..
T Consensus 3 ~l~v~eLk~~l~~~-------gL~~~G~K~~Li~ 29 (35)
T PF02037_consen 3 KLTVAELKEELKER-------GLSTSGKKAELIE 29 (35)
T ss_dssp TSHHHHHHHHHHHT-------TS-STSSHHHHHH
T ss_pred cCcHHHHHHHHHHC-------CCCCCCCHHHHHH
Confidence 35678888888887 7666566666554
No 171
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=22.10 E-value=1.8e+02 Score=20.96 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=30.5
Q ss_pred CCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHH
Q 043797 34 TDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKA 96 (138)
Q Consensus 34 ~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~ 96 (138)
.|.+|+++. ....+...+ + .+..++..+++ +++.++.-|-|.=+..|+.-
T Consensus 45 LD~~GyL~~-~~~eia~~l-------~----~~~~~v~~~l~-~lQ~leP~GigAr~l~EcLl 94 (194)
T PF04963_consen 45 LDDDGYLTE-SLEEIAEEL-------G----VSEEEVEKALE-LLQSLEPAGIGARDLQECLL 94 (194)
T ss_dssp BTTTSTCSS--HHHHHHHC-------T----S-HHHHHHHHH-HHHTTSS--TTTS-TTHHHH
T ss_pred CCCCCccCC-CHHHHHHHh-------C----CCHHHHHHHHH-HHHcCCCCccCcCCHHHHHH
Confidence 567888762 233333333 4 67888888776 78889999888877777643
No 172
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=21.77 E-value=2.5e+02 Score=18.64 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=19.3
Q ss_pred hhhcCCCCCcccHHHHHHHHHh
Q 043797 30 AHLDTDNDGLLSHSEMMKELKC 51 (138)
Q Consensus 30 ~~~D~d~~G~Is~~el~~~l~~ 51 (138)
+.||++.+.+|+.++++.++..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 4689999999999999999875
No 173
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=21.44 E-value=2.5e+02 Score=23.53 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=38.2
Q ss_pred CCCCCcccHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 043797 34 TDNDGLLSHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAE 97 (138)
Q Consensus 34 ~d~~G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~ 97 (138)
.|.+|+++.+ +..+...+ + . ++.+++..++. .++.+|.-|-|.=++.|+..+
T Consensus 120 Ldd~GYl~~~-le~~~~~l-------~--~-~~~~eve~vl~-~iQ~ldP~GV~Ar~l~EcL~l 171 (444)
T COG1508 120 LDDEGYLTES-LEEIAELL-------G--S-VDEEEVEKVLA-RIQSLDPAGVGARDLRECLLL 171 (444)
T ss_pred cCcCCCcccC-HHHHHHhc-------c--c-ccHHHHHHHHH-HHhcCCCCccccCcHHHHHHH
Confidence 4678887766 44444443 4 3 67888888776 899999999998888888665
No 174
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=20.99 E-value=1.6e+02 Score=20.56 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=25.2
Q ss_pred hhHHHHHhcHHHHHHHHHHHhhhhcCCCCCc
Q 043797 9 ATIVSFVEDEYAFNILIRERFAHLDTDNDGL 39 (138)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~ 39 (138)
+.|+.|++....+...+..+|..++.+.++.
T Consensus 38 ~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~ 68 (159)
T PF05974_consen 38 AALEEHLEETEQQIERLEQIFEALGADPSAE 68 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccC
Confidence 4578999999999999999999999887753
No 175
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=20.50 E-value=2.1e+02 Score=17.20 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=25.6
Q ss_pred cHHHHHHHHHhHHhhhhhhCCCCCCCHHHHHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 043797 41 SHSEMMKELKCLRVFETHFGIDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAET 98 (138)
Q Consensus 41 s~~el~~~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~d~~~dg~Is~~eF~~~l 98 (138)
+.+++..++... | ..++++++.. ++++-+..+--..+-..+.+++
T Consensus 15 ~d~~m~~if~l~-------~--~~vs~~el~a----~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 15 KDDDMIEIFALA-------G--FEVSKAELSA----WLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred ChHHHHHHHHHc-------C--CccCHHHHHH----HHCCCCCccccccChHHHHHHH
Confidence 445666666654 5 6777888776 5556554443344444444443
Done!