Query 043801
Match_columns 215
No_of_seqs 158 out of 1848
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:26:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.3E-29 2.9E-34 208.2 26.2 193 22-215 12-207 (455)
2 PRK10367 DNA-damage-inducible 100.0 2.5E-28 5.5E-33 200.4 26.1 192 23-215 5-198 (441)
3 PRK00187 multidrug efflux prot 100.0 2.6E-28 5.6E-33 201.7 25.5 193 21-214 4-200 (464)
4 PRK10189 MATE family multidrug 100.0 5.8E-28 1.2E-32 200.0 26.4 191 24-215 26-223 (478)
5 PRK09575 vmrA multidrug efflux 100.0 1.6E-27 3.6E-32 196.5 24.5 193 22-215 7-201 (453)
6 PRK00187 multidrug efflux prot 100.0 4.9E-27 1.1E-31 194.1 23.4 195 20-215 229-430 (464)
7 PRK01766 multidrug efflux prot 100.0 2.2E-26 4.8E-31 190.1 25.4 194 21-215 6-204 (456)
8 COG0534 NorM Na+-driven multid 100.0 2.2E-26 4.8E-31 189.2 24.5 197 16-214 230-428 (455)
9 PRK01766 multidrug efflux prot 100.0 2E-26 4.3E-31 190.4 23.3 195 20-215 232-428 (456)
10 PRK10189 MATE family multidrug 100.0 1E-25 2.2E-30 186.6 25.3 193 21-214 253-447 (478)
11 PRK09575 vmrA multidrug efflux 99.9 1.7E-25 3.8E-30 184.5 22.9 192 20-214 227-421 (453)
12 TIGR01695 mviN integral membra 99.9 4.2E-24 9E-29 178.6 22.9 192 21-215 217-414 (502)
13 TIGR00797 matE putative efflux 99.9 2.9E-22 6.2E-27 159.8 23.5 179 35-214 1-182 (342)
14 PRK10367 DNA-damage-inducible 99.9 8E-22 1.7E-26 162.0 24.4 184 24-214 229-416 (441)
15 TIGR02900 spore_V_B stage V sp 99.9 8.5E-22 1.8E-26 164.1 22.0 190 21-215 219-420 (488)
16 PRK15099 O-antigen translocase 99.9 4.6E-21 1E-25 156.8 24.1 190 19-215 207-398 (416)
17 PF03023 MVIN: MviN-like prote 99.9 5.2E-21 1.1E-25 157.5 23.7 192 21-214 192-388 (451)
18 PF01554 MatE: MatE; InterPro 99.9 2E-23 4.4E-28 149.3 5.7 160 35-195 1-162 (162)
19 PRK10459 colanic acid exporter 99.9 1.3E-19 2.9E-24 151.2 22.4 187 22-214 202-390 (492)
20 COG2244 RfbX Membrane protein 99.8 2.7E-19 5.8E-24 148.9 20.1 185 22-211 208-394 (480)
21 COG0728 MviN Uncharacterized m 99.8 1.2E-18 2.6E-23 142.8 23.0 191 22-214 227-422 (518)
22 KOG1347 Uncharacterized membra 99.8 1.2E-17 2.6E-22 137.3 18.4 193 23-215 24-216 (473)
23 TIGR00797 matE putative efflux 99.7 2.6E-16 5.6E-21 125.5 16.8 133 19-152 208-341 (342)
24 TIGR02900 spore_V_B stage V sp 99.7 1.9E-15 4.2E-20 126.0 22.0 180 30-214 2-189 (488)
25 TIGR01695 mviN integral membra 99.7 1.6E-14 3.5E-19 120.9 22.9 181 29-214 2-192 (502)
26 PRK15099 O-antigen translocase 99.6 8E-14 1.7E-18 114.2 17.6 179 29-215 3-183 (416)
27 PF03023 MVIN: MviN-like prote 99.3 7.1E-10 1.5E-14 91.8 20.6 155 57-214 5-167 (451)
28 KOG1347 Uncharacterized membra 99.3 3.7E-12 8.1E-17 105.1 6.9 190 23-213 243-436 (473)
29 COG0728 MviN Uncharacterized m 99.2 2.7E-08 5.8E-13 82.5 22.6 188 26-213 6-200 (518)
30 PRK10459 colanic acid exporter 98.9 3.5E-07 7.6E-12 76.7 19.2 173 27-214 5-179 (492)
31 PF01943 Polysacc_synt: Polysa 98.8 5.1E-06 1.1E-10 63.8 21.3 173 30-213 2-175 (273)
32 PF04506 Rft-1: Rft protein; 98.8 6.1E-07 1.3E-11 75.6 16.7 187 26-213 252-454 (549)
33 PF14667 Polysacc_synt_C: Poly 98.6 1.5E-07 3.2E-12 65.9 7.3 65 149-215 2-66 (146)
34 PF13440 Polysacc_synt_3: Poly 98.6 3.8E-05 8.3E-10 58.3 19.9 153 46-213 3-157 (251)
35 COG2244 RfbX Membrane protein 98.6 7.4E-06 1.6E-10 68.5 16.7 152 24-185 3-156 (480)
36 PF01943 Polysacc_synt: Polysa 98.5 1E-06 2.2E-11 67.7 9.9 74 20-94 198-272 (273)
37 KOG2864 Nuclear division RFT1 98.3 4E-05 8.8E-10 61.9 14.0 186 27-214 239-434 (530)
38 PF07260 ANKH: Progressive ank 98.2 0.0012 2.7E-08 51.3 19.4 169 22-197 6-180 (345)
39 PF13440 Polysacc_synt_3: Poly 97.9 0.00012 2.6E-09 55.6 9.1 66 28-94 184-251 (251)
40 COG4267 Predicted membrane pro 91.0 7.6 0.00016 31.7 18.7 125 75-214 72-196 (467)
41 COG4267 Predicted membrane pro 89.4 11 0.00023 30.9 13.0 111 97-211 316-428 (467)
42 PF07260 ANKH: Progressive ank 73.6 9.9 0.00022 30.3 5.2 58 21-79 229-292 (345)
43 PF04505 Dispanin: Interferon- 65.1 31 0.00067 21.4 5.8 38 83-120 36-73 (82)
44 PF01940 DUF92: Integral membr 50.7 77 0.0017 24.0 6.2 141 20-186 72-223 (226)
45 PF03904 DUF334: Domain of unk 48.4 1.2E+02 0.0026 23.0 8.4 40 97-136 140-179 (230)
46 PF02592 DUF165: Uncharacteriz 37.6 1.4E+02 0.003 20.7 13.4 112 80-198 6-122 (145)
47 PF05975 EcsB: Bacterial ABC t 30.2 3.1E+02 0.0068 22.5 13.5 41 98-138 88-130 (386)
48 PF14184 YrvL: Regulatory prot 26.4 2.2E+02 0.0047 19.5 11.0 89 110-200 7-96 (132)
49 PHA02673 ORF109 EEV glycoprote 21.9 3E+02 0.0066 19.6 5.1 25 98-122 23-47 (161)
50 PF04144 SCAMP: SCAMP family; 21.0 3.3E+02 0.0071 19.7 10.9 116 90-211 17-135 (177)
51 TIGR00765 yihY_not_rbn YihY fa 20.8 3.9E+02 0.0085 20.4 20.3 25 174-198 190-214 (259)
52 PF02411 MerT: MerT mercuric t 20.2 2.8E+02 0.0061 18.5 4.7 39 173-211 5-43 (116)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.97 E-value=1.3e-29 Score=208.24 Aligned_cols=193 Identities=25% Similarity=0.382 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHH
Q 043801 22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 101 (215)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~ 101 (215)
.++..|+++++++|.+++++.+.+++.+|+.++|+++++++|+-++++++.. +...+..+++.+..+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 5678999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801 102 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180 (215)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 180 (215)
++++..+++.....+++++..++ +.++++++++++.++|+.+.+..|+++..++.|+..+.....+++|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999887765 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-hc-cchhHHHHHHhhcC
Q 043801 181 ISAATLVVHVLLSWVAIFK-LG-WGLLGASLVLSLSW 215 (215)
Q Consensus 181 ~~~~~~~~~v~~~~~li~~-~~-~G~~G~~~a~~i~~ 215 (215)
.++++.++|+++|+++++. ++ ||+.|+++||++++
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~ 207 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIAR 207 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHH
Confidence 9999999999999999998 56 99999999999874
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.97 E-value=2.5e-28 Score=200.35 Aligned_cols=192 Identities=21% Similarity=0.248 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHH
Q 043801 23 WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHL-GNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 101 (215)
Q Consensus 23 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~ 101 (215)
+++.|++++.++|.+++++...+.+.+|+.++|++ |++++|+.+++.++.+ +...+..+++.+..+.+||++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATS-FLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 46689999999999999999999999999999997 6778999999999999 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801 102 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180 (215)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 180 (215)
++++..++++....+++++..++ ..+.+++.++++.|+|+.+.+.+|+++.+++.|+..+.....+++|+.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888865 78889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 181 ISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 181 ~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
.++++.++|+++++++++.+++|+.|+++|+.+++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~ 198 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAE 198 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 99999999999999999988999999999998864
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.97 E-value=2.6e-28 Score=201.73 Aligned_cols=193 Identities=25% Similarity=0.298 Sum_probs=182.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
+++++.|++++.+.|.+++++...+...+|+.+++++|++++|+++++.++.+ +...+..+++.+..+.++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~-~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYS-FVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 35678999999999999999999999999999999999999999999999999 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 180 (215)
|++++..+++..+.++++++..++..+.+++.++++.|+|+.+.+..|+++..++.++..+....++++|+.||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999998876655679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHhhc
Q 043801 181 ISAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLS 214 (215)
Q Consensus 181 ~~~~~~~~~v~~~~~li~~~----~~G~~G~~~a~~i~ 214 (215)
.++++.++|++++|++++.. ++|+.|+++|+.++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~ 200 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALV 200 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHH
Confidence 99999999999999999752 48999999999875
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.97 E-value=5.8e-28 Score=200.02 Aligned_cols=191 Identities=18% Similarity=0.246 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHH
Q 043801 24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDML 103 (215)
Q Consensus 24 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~ 103 (215)
+.+|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++.. +...+..+++.+..+.++|++|++|+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~-~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNM-VIMAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 45999999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801 104 GVYLQRSAVILTATGIPLMVI-YIFSKQILLLLG--ESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180 (215)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 180 (215)
++..+++..+.+.++++.+++ +.+++++.+++. .|+|+.+.+..|+++..++.++..+.....+++|+.||++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988865 888999999995 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHhhcC
Q 043801 181 ISAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLSW 215 (215)
Q Consensus 181 ~~~~~~~~~v~~~~~li~~~----~~G~~G~~~a~~i~~ 215 (215)
.+++..++|+++++++++.+ ++|+.|+|+|+.+++
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~ 223 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISR 223 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHH
Confidence 99999999999999999753 799999999998863
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.96 E-value=1.6e-27 Score=196.53 Aligned_cols=193 Identities=21% Similarity=0.299 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
+++..|++++.+.|.+++++...+++.+|+.++++ .|+++++++++++++.+ +...+..+++.+..+.++|++|++|+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIG-IILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 45678999999999999999999999999999999 59999999999999999 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA 179 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 179 (215)
|++++..++++.+..+++++..++ +.+++++.++++.|+|..+.+..|+++..++.++..+......++|+.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 999999999999999999988866 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 180 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 180 ~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
+.++.+.++|+++++++++.+++|+.|+++|+.+++
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~ 201 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQ 201 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHH
Confidence 999999999999999999988899999999999874
No 6
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.96 E-value=4.9e-27 Score=194.11 Aligned_cols=195 Identities=19% Similarity=0.212 Sum_probs=182.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 043801 20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQK 99 (215)
Q Consensus 20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 99 (215)
+++++.+|++++.++|.+++++.+.....+|..+++++|++++|+++++.++.. +.+.+..+++.+..++++|++|++|
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~-l~~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVS-VAFMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456788999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC
Q 043801 100 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE--SS---AIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQS 173 (215)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 173 (215)
+|++++..+.+...+.+++++.+++ +++++++.++|.+ |+ |+.+.+..++++.+++.++..++.+..+.+|+.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999988865 8899999999953 43 6788899999999999999999999999999999
Q ss_pred CccHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 174 IISPSAYISAATL-VVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 174 ~~~~~~~~~~~~~-~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
|++.+++.++.+. +++++++|++.+.+++|+.|+|+++.+++
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~ 430 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGL 430 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHH
Confidence 9999999999984 99999999999887899999999998763
No 7
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.96 E-value=2.2e-26 Score=190.13 Aligned_cols=194 Identities=18% Similarity=0.257 Sum_probs=181.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
..++.+|++++.+.|.+++++..++.+.+|+.+++++|++++++++++.++.. +...+..+++.+..|.+||++|++|+
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 34677999999999999999999999999999999999999999999999887 88888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA 179 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 179 (215)
|++++..+++..+.+++++++.++ +.+++++.++++.|+|+.+.+..|+++.+++.++..+...+++++|+.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 999999999999999999988866 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHhhcC
Q 043801 180 YISAATLVVHVLLSWVAIFK----LGWGLLGASLVLSLSW 215 (215)
Q Consensus 180 ~~~~~~~~~~v~~~~~li~~----~~~G~~G~~~a~~i~~ 215 (215)
+.++++.++|+++++++++. .++|+.|+++|+.+++
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~ 204 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVY 204 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Confidence 99999999999999999853 2589999999998863
No 8
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.96 E-value=2.2e-26 Score=189.21 Aligned_cols=197 Identities=19% Similarity=0.250 Sum_probs=186.9
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043801 16 QRIKKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAY 95 (215)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~ 95 (215)
.+..+++++.+|++++.|.|.+++++.......+.+.+++++|++.+|+|+++.++.+ +.+++..+++++.+++++|++
T Consensus 230 ~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~-~~~~~~~gi~~a~~~lvG~~~ 308 (455)
T COG0534 230 KKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIAS-FIFMPPFGIAQAVTILVGQNL 308 (455)
T ss_pred hhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3445778899999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCC
Q 043801 96 GAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSI 174 (215)
Q Consensus 96 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 174 (215)
|++|+|++++..+.+..++..++...+++ +++++++.++|.+|+|+.+.+..++++.++..++.+.+....+.+||.||
T Consensus 309 Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~ 388 (455)
T COG0534 309 GAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGD 388 (455)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998866 99999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 175 ISPSAYISAAT-LVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 175 ~~~~~~~~~~~-~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
+|.++..++.+ +.+.+++.+++.+.+ +|..|+|++..++
T Consensus 389 ~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~ 428 (455)
T COG0534 389 AKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLS 428 (455)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHH
Confidence 99999999996 688899999999854 9999999998765
No 9
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.95 E-value=2e-26 Score=190.45 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=183.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 043801 20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQK 99 (215)
Q Consensus 20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 99 (215)
+++++.+|++++.++|.++++..+.....++..+++++|++++|+++++.++.+ +...+..+++.+..+.++|++|++|
T Consensus 232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~-~~~~~~~gl~~a~~~~v~~~~Ga~~ 310 (456)
T PRK01766 232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSS-LLFMLPLSLAMALTIRVGFELGAGR 310 (456)
T ss_pred CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356788999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHH
Q 043801 100 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPS 178 (215)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 178 (215)
++++++..+.+..++..++++.+.+ +.+++++.++|..|+|+.+.+..++++..+..++..++....+.+|+.||++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 390 (456)
T PRK01766 311 TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI 390 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence 9999999999999999999998865 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 179 AYISAATL-VVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 179 ~~~~~~~~-~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
++.++.+. ++++++.+++.+..++|+.|+|+++.+++
T Consensus 391 ~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~ 428 (456)
T PRK01766 391 FFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGL 428 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHH
Confidence 99999975 78999999998877899999999998763
No 10
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.95 E-value=1e-25 Score=186.64 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
.+++.+|++++.|.|.++++....+...+.+.+++++|++++|+++++.++.+ +.+.+..+++++.+++++|++|++|.
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~-~~~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAA-LINLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 46788999999999999999999999999888999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA 179 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 179 (215)
|++++..+.+...+.+.++..+++ +++++++.++|.+|+|+.+.+..++++.++..++.+.+.+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 999999999999999999888866 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 180 YISAAT-LVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 180 ~~~~~~-~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
++++.+ +++.+++.+++...+++|..|+|++..++
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~ 447 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLD 447 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999987 68899999998877789999999998765
No 11
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.95 E-value=1.7e-25 Score=184.53 Aligned_cols=192 Identities=15% Similarity=0.244 Sum_probs=179.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 043801 20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGN-LELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQ 98 (215)
Q Consensus 20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~-~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~ 98 (215)
+++++..|++++.|.|..+++....+...+.+.+++++|+ +++|+++++.++.+ +...+..+++.+..|.+||++|++
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~-~~~~~~~gi~~a~~~lvg~~~Ga~ 305 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMV-LYYLVAEGIAEGMQPPVSYYFGAR 305 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCC
Confidence 4567889999999999999999999999999999999885 58999999999999 999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCcc
Q 043801 99 KYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE-SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIIS 176 (215)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 176 (215)
|+|++++..+.+.++++..+++.+++ +.+++++.++|.. |+|+.+.+..++++.+++.++..+..+..+++|+.||++
T Consensus 306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 385 (453)
T PRK09575 306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG 385 (453)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999998866 8899999999985 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 177 PSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
.++..++...++++++.+++.+ .+|+.|+|+|+.++
T Consensus 386 ~~~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~ 421 (453)
T PRK09575 386 KALFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLS 421 (453)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHH
Confidence 9999999888889999998876 47999999999875
No 12
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.93 E-value=4.2e-24 Score=178.55 Aligned_cols=192 Identities=18% Similarity=0.140 Sum_probs=175.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchhc
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAY-GLMLGMGSATETLCGQAYGAQK 99 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~~~~~s~~~g~~~ 99 (215)
.+++..|++++.+.|..++++...+...+|+.+.+..|++++++|+.+.++.+ +.. .+..+++++..|.+++++|++|
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~-~~~~~~~~~i~~~~~P~~s~~~~~~~ 295 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQ-LPLGIFGISLSTVLLPKLSRHASEGN 295 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35677999999999999999999999999998866699999999999999998 554 5678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCC
Q 043801 100 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSI 174 (215)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 174 (215)
+|++++..++..+....+++|.+++ ..+++++.+++.+ |+|....+..++++++++.++.+++....+.+++.||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~ 375 (502)
T TIGR01695 296 WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKD 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccC
Confidence 9999999999999999999999976 8999999999865 5567888999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 175 ISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
+|.+++.++...++++++++++++ .+|..|+|+|+.+++
T Consensus 376 ~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~ 414 (502)
T TIGR01695 376 TRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAAS 414 (502)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHH
Confidence 999999999999999999999988 679999999998763
No 13
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.91 E-value=2.9e-22 Score=159.76 Aligned_cols=179 Identities=35% Similarity=0.629 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHH
Q 043801 35 PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVIL 114 (215)
Q Consensus 35 p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 114 (215)
|.++++++..+...+|+.+++++|++++++++++.++.. +...+..+++++..|.++++.|++|+|++++..++...+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHH
Q 043801 115 TATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLS 193 (215)
Q Consensus 115 ~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~ 193 (215)
.+++++.+++ +.+++++.++++.|++..+.+..++++++++.++........+++|+.||++...+.++.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998866 889999999998788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-Hhc-cchhHHHHHHhhc
Q 043801 194 WVAIF-KLG-WGLLGASLVLSLS 214 (215)
Q Consensus 194 ~~li~-~~~-~G~~G~~~a~~i~ 214 (215)
+++++ .++ +|+.|+++++.++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~ 182 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVIS 182 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHH
Confidence 99987 667 8899999998876
No 14
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.91 E-value=8e-22 Score=162.02 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHH
Q 043801 24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDML 103 (215)
Q Consensus 24 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~ 103 (215)
+..|++++.+.|.++++........+...+++++|++++|+|+++.++.+ +.+.+..+++++.+|.++|++|++|.|++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~-~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLT-FTAYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 47899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC---CccHHH
Q 043801 104 GVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQS---IISPSA 179 (215)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~ 179 (215)
++..+.+.+.....+.+.+++ +.+++++.++|.+|+|+.+.+..++++.++..+.........+++++.+ |+|.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999999998866 8899999999999999999999999998876443334444444455544 599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 180 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 180 ~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
..++++..+ .++..+ ++|..|+|++..++
T Consensus 388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~ 416 (441)
T PRK10367 388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVF 416 (441)
T ss_pred HHHHHHHHH----HHHHHH--HcCchHHHHHHHHH
Confidence 998887432 222233 57999999998765
No 15
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.90 E-value=8.5e-22 Score=164.12 Aligned_cols=190 Identities=15% Similarity=0.158 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC------hH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LG------NL---ELAAV-SLGNTGIQVFAYGLMLGMGSATET 89 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g------~~---~~a~~-~~~~~i~~~~~~~~~~~~~~~~~~ 89 (215)
.+++.+|++++++.|.+++++...+.+.+|+.++++ ++ .+ .++.| +++.++.+ +...+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~-~~~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLT-FPAVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHH-hHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999987 32 12 23333 35667777 777888999999999
Q ss_pred HHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 043801 90 LCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKL 168 (215)
Q Consensus 90 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 168 (215)
.++++.|++|+|+.++..++..++...+++|.+++ ..+++++++++.++++ +..+++++++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998866 8999999999876543 567899999999999999999999
Q ss_pred HhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 169 PQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 169 l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
+++.||+|.+++.++...+++++++++++....+|+.|+|+|+.+++
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~ 420 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITS 420 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 99999999999999999999999999988222789999999998763
No 16
>PRK15099 O-antigen translocase; Provisional
Probab=99.90 E-value=4.6e-21 Score=156.78 Aligned_cols=190 Identities=7% Similarity=-0.074 Sum_probs=168.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 043801 19 KKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGA 97 (215)
Q Consensus 19 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~ 97 (215)
.+.+++.+|+++++|.|..++++...+.+.+|+.++++ +|++++|+|+.+.++.+.+...+..+++++..|.++++
T Consensus 207 ~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~--- 283 (416)
T PRK15099 207 PSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL--- 283 (416)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 34578889999999999999999999999999999974 99999999999999977355889999999999999995
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCcc
Q 043801 98 QKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIIS 176 (215)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 176 (215)
+|+|+.++..++.......++++.+++ +++++++++++.+|+ ++++.+++++++++..+...+........+.++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~ 361 (416)
T PRK15099 284 TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLR 361 (416)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999988888866 799999999998876 56678899999999888888877777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 177 PSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
.....++...++++++++++++ .+|..|+++++.++|
T Consensus 362 ~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~ 398 (416)
T PRK15099 362 FYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATY 398 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHH
Confidence 8888888888999999999999 689999999998875
No 17
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.89 E-value=5.2e-21 Score=157.53 Aligned_cols=192 Identities=17% Similarity=0.172 Sum_probs=178.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
...+..|++++...|..++.....+...+|+.+.+.+++.++++++.++++.++....+..+++++..|..|++..++|.
T Consensus 192 ~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~ 271 (451)
T PF03023_consen 192 WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW 271 (451)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34566999999999999999999999999999999999999999999999999666688889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCc
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSII 175 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 175 (215)
++.++..+++.+....+.+|++++ ..+++++.+++.+ +.|..+.....+++++++.++.+++..+...+.+.||+
T Consensus 272 ~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~ 351 (451)
T PF03023_consen 272 EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDT 351 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCc
Confidence 999999999999999999999976 8999999998642 55667778899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 176 SPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
|.+++.++.+.++|++++.++.+ .+|..|.++|+.++
T Consensus 352 ~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~ 388 (451)
T PF03023_consen 352 KTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLS 388 (451)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 99999999999999999999999 78999999998875
No 18
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.88 E-value=2e-23 Score=149.29 Aligned_cols=160 Identities=23% Similarity=0.373 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHH
Q 043801 35 PAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVIL 114 (215)
Q Consensus 35 p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 114 (215)
|.+++++...+.+.+|+.+++++|++++++++++.++.+ +...+..+++.+..+.+||++|++|+|++++..+++..+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~-~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFS-ILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhhcccccccccceeecccccccccccccccccccccc
Confidence 889999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHH-HHHHHH
Q 043801 115 TATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATL-VVHVLL 192 (215)
Q Consensus 115 ~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~v~~ 192 (215)
..++++..+. ..+++++.++++.|+|+.+.+..++++..++.++........+++++.||++.+++.++.+. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999976 89999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred HHH
Q 043801 193 SWV 195 (215)
Q Consensus 193 ~~~ 195 (215)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 19
>PRK10459 colanic acid exporter; Provisional
Probab=99.86 E-value=1.3e-19 Score=151.19 Aligned_cols=187 Identities=17% Similarity=0.088 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
+++..|++++++.|...+++...+...+|+.+++. .|++++|.|+.+.++.+.....+...++....|..++. ++|+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 45678999999999999999999999999999999 89999999999999988345556666788999999986 5788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA 179 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 179 (215)
++.++..++..+....+++|+.++ ..++++++.++.+++ +..+...++++++...+..........+++.||+|..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 899999999999999999998876 899999999987766 67788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 180 YISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 180 ~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
+.+++..++.++..+.+.+ .+|..|+++|+.++
T Consensus 358 ~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~ 390 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLV 390 (492)
T ss_pred HHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHH
Confidence 9999998888888888777 67999999999875
No 20
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=148.93 Aligned_cols=185 Identities=21% Similarity=0.222 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
.++.+|++++.+.|..++.+...+.+.+|+.+++. +|++++|.|+.++++.. ....+..+++.+..|..++..+++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~-~~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVS-LLLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 47889999999999999999999999999999999 89999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA 179 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 179 (215)
++.++..++..+.....++|..++ ..++++++.++.+++ +..+...++++++..++..........+++.|+++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999976 899999999988776 44488899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 043801 180 YISAATLVVHVLLSWVAIFKLGWGLLGASLVL 211 (215)
Q Consensus 180 ~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~ 211 (215)
+.+.++.++++.+++++++ .+|..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH
Confidence 9999999999999999999 77888888877
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=142.83 Aligned_cols=191 Identities=15% Similarity=0.122 Sum_probs=175.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHH
Q 043801 22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYD 101 (215)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~ 101 (215)
+....|++.+...|..++..+.++...+|+.+.+.+.+.+++.++++++++++....+..++++...|..|++.+++|.+
T Consensus 227 ~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~ 306 (518)
T COG0728 227 KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP 306 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 33679999999999999999999999999999999999999999999999996677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCcc
Q 043801 102 MLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIIS 176 (215)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 176 (215)
+.++..+++.+.+.++++|++.+ ..+++|+.+++.+ +++......+.+..+..+.++..+..++...+.+.+|+|
T Consensus 307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999976 9999999998632 344466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 177 PSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
.|+++++++.++|+.+++.+.+ .+|..|.++++.++
T Consensus 387 tP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a 422 (518)
T COG0728 387 TPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLA 422 (518)
T ss_pred cChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHH
Confidence 9999999999999999988887 56777888877654
No 22
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=137.28 Aligned_cols=193 Identities=47% Similarity=0.790 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHH
Q 043801 23 WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDM 102 (215)
Q Consensus 23 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~ 102 (215)
+++.|++.+++.|..+..+.+.....++..++||+|+..+|+.+++....+...+.+..+...+..+..+|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 78899999999999999999999999999999999999999999999988866788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHH
Q 043801 103 LGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYIS 182 (215)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 182 (215)
.....+++.......+++...++.+.+++...+++|+++...+..|.+...+..+..........++|+.++.....++.
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 183 AATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 183 ~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
....++++++++++++.+++|..|++++..+++
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~ 216 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASY 216 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHH
Confidence 999999999999999999999999999988764
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.73 E-value=2.6e-16 Score=125.50 Aligned_cols=133 Identities=24% Similarity=0.335 Sum_probs=123.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 043801 19 KKATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQ 98 (215)
Q Consensus 19 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~ 98 (215)
.+++++.+|++++++.|.+++++...+...+|+.+++.+|++++++|+++.++.+ +...+..+++.+..|.++++++++
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVES-LLFMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4456788999999999999999999999999999998899999999999999999 889999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHH
Q 043801 99 KYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGL 152 (215)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 152 (215)
|.|++++..+++.+....++++...+ +++++++.++|.+|+|+.+.+..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998866 8999999999999999888888887653
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=1.9e-15 Score=126.01 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhcHHHHHHHH
Q 043801 30 FRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGL-MLGMGSATETLCGQAYGAQKYDMLGVYL 107 (215)
Q Consensus 30 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~ 107 (215)
.|.+.|.+++++...+...+|+.++++ +|+++.|+++.+..+.+ +...+ ..|++++..+.++|+.|++|+|+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~-~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~ 80 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYF-LFITLTTGGLPVAISKFVAEASAKNDRKNIKKIL 80 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHH-HHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence 467899999999999999999999999 89999999999999888 55554 4589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHH
Q 043801 108 QRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATL 186 (215)
Q Consensus 108 ~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 186 (215)
+.++.+....+++..++ +++++++.+.+.+|++. ..++++.++..++..+....+..+|+.+|.+.....+.++.
T Consensus 81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 156 (488)
T TIGR02900 81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQ 156 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHH
Confidence 99999999999888865 78888888877666543 34677888889999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH-----hccchhHHHHHHhhc
Q 043801 187 VVHVLLSWVAIFK-----LGWGLLGASLVLSLS 214 (215)
Q Consensus 187 ~~~v~~~~~li~~-----~~~G~~G~~~a~~i~ 214 (215)
++++.++..++.. .++|+.|+++++.++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~ 189 (488)
T TIGR02900 157 IVRISVVALLISAFLPYGLEYAVAGAYLSLVLG 189 (488)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 8888776665542 245677777776554
No 25
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.69 E-value=1.6e-14 Score=120.89 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhchhcHHHHH
Q 043801 29 LFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLEL-AAVSLGNTGIQVFAYGL-M-LGMGSATETLCGQAYGAQKYDMLG 104 (215)
Q Consensus 29 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~-a~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~s~~~g~~~~~~~~ 104 (215)
+.|.+.-.+++++...+.+.+|..++++ +|+++. ++|+++.++.+ ....+ . .+++++..|...++.+++ |+++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~-~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~ 78 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPN-FFRRLFAEGAFNSAFVPVFTKAKKKE--KEAR 78 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHhhh--hHHH
Confidence 5678888999999999999999999999 999999 89999999887 44433 3 467888777776654322 6777
Q ss_pred HHHHHHHHHHHHHHH-HHHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801 105 VYLQRSAVILTATGI-PLMVI-YIFSKQILLLL--GESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180 (215)
Q Consensus 105 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 180 (215)
+............+. ...++ +++++++.+++ +.|+|..+.+..|++++.++.++..+....++++|+.||.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence 777676665554443 34444 78899999988 346666788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHH--HHHhhc
Q 043801 181 ISAATLVVHVLLSWVAIFKLGWGLLGAS--LVLSLS 214 (215)
Q Consensus 181 ~~~~~~~~~v~~~~~li~~~~~G~~G~~--~a~~i~ 214 (215)
.++...++++...+++.+ ++|..|++ +++.++
T Consensus 159 ~~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~ 192 (502)
T TIGR01695 159 SPILFNIGVILSLLFFDW--NYGQYSLALAIGVLIG 192 (502)
T ss_pred HHHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHH
Confidence 999988777765545444 78999988 877664
No 26
>PRK15099 O-antigen translocase; Provisional
Probab=99.61 E-value=8e-14 Score=114.20 Aligned_cols=179 Identities=12% Similarity=-0.014 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHH
Q 043801 29 LFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYL 107 (215)
Q Consensus 29 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~ 107 (215)
+.|.+.+...+++...+...+...++++ +|+++.|.++....+...+......+++++....++|+ ++|+|+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677888889999999999998888889 99999999999998888344444778888888889988 68889999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHH
Q 043801 108 QRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATL 186 (215)
Q Consensus 108 ~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 186 (215)
+.++...+..++..++. +.+.+++...+.++++ + ..++.+..+..+.........+.+|+.||++.+...++.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888865 8888999988877664 2 24555566656666778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 187 VVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 187 ~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
++|+.+ +++... ..|+.|+++|+.+++
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~ 183 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVP 183 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHH
Confidence 999887 444442 239999999998863
No 27
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.32 E-value=7.1e-10 Score=91.80 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=128.8
Q ss_pred cChH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 043801 57 LGNL-ELAAVSLGNTGIQVFAYGLM-LGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILL 133 (215)
Q Consensus 57 ~g~~-~~a~~~~~~~i~~~~~~~~~-~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 133 (215)
+|.. ..++|.++.++.+.+...+. .+++.+..|..++.. ++++|+.++..+..........+..+++ +++++++.+
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 47899999999993434454 468999999999999 8899999999999988888888887765 899999999
Q ss_pred HcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccc---hhHHH
Q 043801 134 LLG--ESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWG---LLGAS 208 (215)
Q Consensus 134 l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G---~~G~~ 208 (215)
++. .|+|..+.+.+.+++..+..++..+..+..+++|+.+|...+....+...+..++..+++.. .+| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 984 46788899999999999999999999999999999999999999888887765555444444 567 78888
Q ss_pred HHHhhc
Q 043801 209 LVLSLS 214 (215)
Q Consensus 209 ~a~~i~ 214 (215)
+|..++
T Consensus 162 ~g~~~g 167 (451)
T PF03023_consen 162 WGVLIG 167 (451)
T ss_pred HHHHHH
Confidence 887765
No 28
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.31 E-value=3.7e-12 Score=105.08 Aligned_cols=190 Identities=17% Similarity=0.122 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 23 WIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGN--LELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 23 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~--~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
.+.++.+++.+.|..+....++-...+-....|.++. .+++..++..++.. ..++...+++.+...++++.+|++|+
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~-~~~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGG-WHLMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHcCCCh
Confidence 7889999999999999999999999999999999764 67999999999999 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA 179 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 179 (215)
+.+|.....+....+..+...+.. +...+.+..+|++|+|+.+......++.+...+.+..+.+.++..++.|.++...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 999999999998888888888855 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhccchhHHHHHHhh
Q 043801 180 YISAAT-LVVHVLLSWVAIFKLGWGLLGASLVLSL 213 (215)
Q Consensus 180 ~~~~~~-~~~~v~~~~~li~~~~~G~~G~~~a~~i 213 (215)
++++.. .++.+++...+-+.+++|..|.|.+...
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~ 436 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILL 436 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHH
Confidence 999987 5788888888777678999999988654
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.18 E-value=2.7e-08 Score=82.50 Aligned_cols=188 Identities=12% Similarity=0.073 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchhcHHH
Q 043801 26 LKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGN-LELAAVSLGNTGIQVFAYGLMLG-MGSATETLCGQAYGAQKYDM 102 (215)
Q Consensus 26 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~-~~~a~~~~~~~i~~~~~~~~~~~-~~~~~~~~~s~~~g~~~~~~ 102 (215)
-.+++|.+.-....++.+.+...+-..+++. +|. ...++|+++.++-+++--.+..+ ++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3456677777777888888888885555555 888 45899999999999555555544 48999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHH-cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHH
Q 043801 103 LGVYLQRSAVILTATGIPLMVI-YIFSKQILLL-LGE--SSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPS 178 (215)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 178 (215)
.++..+........+.+..+++ .++++.+.+. +.. |++....+....+++.+..++.++.....++|++.+|-..+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 8888887776666666666655 7888888854 433 23333367888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhh
Q 043801 179 AYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSL 213 (215)
Q Consensus 179 ~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i 213 (215)
.+.-+.-++.-+....++.+..+--..+.++|+.+
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~ 200 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLI 200 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 99888887776656666665433224566666554
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=98.91 E-value=3.5e-07 Score=76.73 Aligned_cols=173 Identities=15% Similarity=0.097 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHH
Q 043801 27 KSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGV 105 (215)
Q Consensus 27 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~ 105 (215)
++..+-+.+..+++........+...++++ +|+++.|.++.+..+.+++......|++++. .+. .++++ +
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~-~~~~~----~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR-QDISH----L 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc-ccCCH----H
Confidence 567778888899999999999999999999 9999999999999988833334445666544 222 11222 2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHH
Q 043801 106 YLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAA 184 (215)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 184 (215)
..+..+......++...++ +.+++++..++. +++ ....+++..+..++..+.......++...+.+.....+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3345555666666666655 666777666554 443 3346777777888888888889999999999988888888
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 185 TLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 185 ~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
..++.......+.. .++|+.+..++..++
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~ 179 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVN 179 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHH
Confidence 77776666655543 367888888876654
No 31
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.81 E-value=5.1e-06 Score=63.78 Aligned_cols=173 Identities=17% Similarity=0.192 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHH
Q 043801 30 FRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQ 108 (215)
Q Consensus 30 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~ 108 (215)
+|.+......++...+...+...++.+ +|+++.|.++....+.+++......|++++.....++..++ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 567788888999999999999999998 99999999999999988344444788888888887777432 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHH
Q 043801 109 RSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVV 188 (215)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 188 (215)
.......+.++..... ..+...+..++. . ..+........+..........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~----~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLI----LLIASFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333333332222 222224443331 1 1122222222256777888889999999999999999988877
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhh
Q 043801 189 HVLLSWVAIFKLGWGLLGASLVLSL 213 (215)
Q Consensus 189 ~v~~~~~li~~~~~G~~G~~~a~~i 213 (215)
.+.+..++... +.+..+..++..+
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~ 175 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVI 175 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 77666666553 2335565555443
No 32
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.79 E-value=6.1e-07 Score=75.61 Aligned_cols=187 Identities=14% Similarity=0.075 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH--
Q 043801 26 LKSLFRLAAPAILVYMLNNLVAMSTQIFCGH---LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY-- 100 (215)
Q Consensus 26 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~-- 100 (215)
-+++++.......+++.-.+.+.-|++++.. .+.++.|.|+++++.-+++.-.+..++-.......++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4788899999999999999999999999988 56788999999999999888899999999999999988754432
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Q 043801 101 -------DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQ 172 (215)
Q Consensus 101 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 172 (215)
++..+.....++....+++..... -..++.+.+++.+++=....+...++.+|...|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 446666777777777777766644 777788888876543223346788999999999999999999999998
Q ss_pred CCccHHHHHHHHH---HHHHHHHHHHHHHHhccchhHHHHHHhh
Q 043801 173 SIISPSAYISAAT---LVVHVLLSWVAIFKLGWGLLGASLVLSL 213 (215)
Q Consensus 173 g~~~~~~~~~~~~---~~~~v~~~~~li~~~~~G~~G~~~a~~i 213 (215)
...+.....+-.. .++.+..++++..+ ++|..|..+|..+
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~i 454 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCI 454 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHH
Confidence 7776666555543 45567778888886 7899999999875
No 33
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.63 E-value=1.5e-07 Score=65.86 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Q 043801 149 VFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSW 215 (215)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~~ 215 (215)
+++++++.++..+....++.+++.||+|..++.++++.++|+++++++++ ++|..|+++|+.+++
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~ 66 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISE 66 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999998 789999999998763
No 34
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.58 E-value=3.8e-05 Score=58.34 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=95.9
Q ss_pred HHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 043801 46 VAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGL-MLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMV 123 (215)
Q Consensus 46 ~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (215)
.+.+...++++ +|+++.|.|+....+.. +...+ ..++...... . .++|+++.++..+.......+.++...+
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~-~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVS-ILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888 99999999999999888 44443 4444444333 2 3355666666665555444443333332
Q ss_pred HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043801 124 IYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWG 203 (215)
Q Consensus 124 ~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G 203 (215)
+ ...+...+ ++++ ...++....+..+.........+.+++.+|.+..........+..+....++... +.+
T Consensus 77 ~---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 22222233 3332 3345666667778888899999999999999999999998877764444333332 336
Q ss_pred hhHHHHHHhh
Q 043801 204 LLGASLVLSL 213 (215)
Q Consensus 204 ~~G~~~a~~i 213 (215)
..+..++..+
T Consensus 148 ~~~~~~~~~~ 157 (251)
T PF13440_consen 148 LWSILLAFII 157 (251)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.56 E-value=7.4e-06 Score=68.52 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHH
Q 043801 24 IELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDM 102 (215)
Q Consensus 24 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~ 102 (215)
...+++.+.+.....+++...+...+....+++ +|+++.|.++.+..+.+++......|+..+....++++.++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 345678888899999999999999999999999 9999999999999999945555558888888888888876666666
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHH
Q 043801 103 LGVY-LQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYI 181 (215)
Q Consensus 103 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 181 (215)
.+.. ...........+.+.........+. ++ .....+....+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5555 4444444444444433332222222 22 24556778888899999999999999999999999888
Q ss_pred HHHH
Q 043801 182 SAAT 185 (215)
Q Consensus 182 ~~~~ 185 (215)
.+..
T Consensus 153 ~~~~ 156 (480)
T COG2244 153 IVSS 156 (480)
T ss_pred HHHH
Confidence 4444
No 36
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.52 E-value=1e-06 Score=67.72 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=69.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043801 20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQA 94 (215)
Q Consensus 20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~ 94 (215)
.++++..|++++.+.|..++.+...+....|+.+++. .|++++|.|+.+.++.. ....+..++.++..|..++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~-~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 198 FFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLAS-AISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3347889999999999999999999999999999999 89999999999999999 99999999999999999986
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=4e-05 Score=61.92 Aligned_cols=186 Identities=15% Similarity=0.125 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHH
Q 043801 27 KSLFRLAAPAILVYMLNNLVAMSTQIFCGH---LGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKYDML 103 (215)
Q Consensus 27 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~ 103 (215)
++..+......-+.+.-.+.+-=|..+++. ++-++.|.|.++++.-+++.-.+..++-.......+|....++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 344555555556666666677778888874 67778899999999888788888889988888888887766666555
Q ss_pred HH---HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHH
Q 043801 104 GV---YLQRSAVILTATGIPLMV-IYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSA 179 (215)
Q Consensus 104 ~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 179 (215)
++ +.....+....+++.... +..-++..+.++++++=....+...++++|+..++.+++.+..++.++....+...
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 55 445555555555655443 36667788888776542233456789999999999999999999999887777665
Q ss_pred HHH---HHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 180 YIS---AATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 180 ~~~---~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
..+ ++..++.++.+|+++-+ +|..|..+|..+.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiN 434 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIIN 434 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHH
Confidence 544 44567778899999984 4679999887653
No 38
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.19 E-value=0.0012 Score=51.27 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 043801 22 TWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHL---GNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQ 98 (215)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~---g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~ 98 (215)
....++++.++-.|..++.++..+...+.+.-+++- -.+.+|+|+++..+.- +...+...+-+....++-+.
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~l-f~~sp~~~~~~igl~~V~s~---- 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLML-FFASPLSMFHHIGLVFVNSK---- 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHhChhhhhHHHHHHHhcch----
Confidence 345688999999999999999999998877777662 2355999999999888 88888888887777665332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCc
Q 043801 99 KYDMLGVYLQRSAVILTATGIPLMVI-Y-IFSKQILL-LLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSII 175 (215)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 175 (215)
+++-+ ........+.+..+...++ + .++..++. +++.++++.+.+...+.++.+..++.++....++++.=.+++
T Consensus 81 -rsrr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s 158 (345)
T PF07260_consen 81 -RSRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS 158 (345)
T ss_pred -hhhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence 22211 1111112222222222222 2 34444443 567799999999999999999999999999999987755777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 043801 176 SPSAYISAATLVVHVLLSWVAI 197 (215)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~li 197 (215)
......++...+..+.....++
T Consensus 159 ~iV~~aSI~~v~~qvV~v~~ll 180 (345)
T PF07260_consen 159 WIVGSASIADVIAQVVLVAILL 180 (345)
T ss_pred eEeehHHHHHHHHHHHHHHHHH
Confidence 7777777665555555444444
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.88 E-value=0.00012 Score=55.58 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 043801 28 SLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAY-GLMLGMGSATETLCGQA 94 (215)
Q Consensus 28 ~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~~~~~s~~ 94 (215)
+.++.+.|..++++.......+|..+++. +|++++|.|+.+.++.+ ... .+..++++...|.++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~-~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLAS-LPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999 99999999999999999 666 99999999999998873
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=91.00 E-value=7.6 Score=31.71 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 043801 75 FAYGLMLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIP 154 (215)
Q Consensus 75 ~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~ 154 (215)
+...++.+++-..+..+|...=++|.+++..............+...+. +. .+-.++ .... +=...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~v-f~~~~~--~si~--yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IV-FFVNNQ--YSIV--YKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------Hh-hhhcCc--hhHH--HHHHHHH
Confidence 4446677788888888888887777777766554433332222222211 11 111222 1112 2222233
Q ss_pred HHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 155 QIFAYAVNFPIQKLPQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
.+...+..=+...++.+.+|.+...+....+.++.+.+..++-. .++.|.-++..++
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IG 196 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIG 196 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHh
Confidence 33334444455567889999999999999998888888877765 4677776665543
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=89.38 E-value=11 Score=30.91 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=75.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCc
Q 043801 97 AQKYDMLGVYLQRSAVILTATGIPLMV-IYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSII 175 (215)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 175 (215)
+++.++.....++.+.-.+-+-..+++ ++.+++.+..+++-++. ..+.+++-.++.-+....+..-.+.--.++.
T Consensus 316 ~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r 391 (467)
T COG4267 316 ENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYVDVLGVSCQIVFMSLLNIFLYFDYR 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777778877777777666665 48889999999887653 3345566666666665555555555556777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHH
Q 043801 176 SPSAYISAATLVVHVLLSWVAIFKL-GWGLLGASLVL 211 (215)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~li~~~-~~G~~G~~~a~ 211 (215)
+..+..+..-.+.|-+++++....- ++--.|..+|.
T Consensus 392 ~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~ 428 (467)
T COG4267 392 RIALELTALFLISNGILTFIFLELGPGYYGVGFFLAS 428 (467)
T ss_pred hhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHH
Confidence 7788888888888988888887631 23334555554
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=73.62 E-value=9.9 Score=30.28 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC-h----HHHHHHHHHHHHHHHHHHHH
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LG-N----LELAAVSLGNTGIQVFAYGL 79 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g-~----~~~a~~~~~~~i~~~~~~~~ 79 (215)
.+..-.++++++.+|.+..+..+....-+.+.++++ +| . +++|...+.+++-- +.+.+
T Consensus 229 ~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh-~~y~w 292 (345)
T PF07260_consen 229 GDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGH-MPYGW 292 (345)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCc-Ccchh
Confidence 344568999999999999999999999999999999 53 3 56777666666544 44433
No 43
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=65.06 E-value=31 Score=21.42 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHH
Q 043801 83 MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIP 120 (215)
Q Consensus 83 ~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 120 (215)
++......+-+++.++|.+.+++..+++..+..+-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34444456667778899999999999888776554443
No 44
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=50.71 E-value=77 Score=24.02 Aligned_cols=141 Identities=7% Similarity=-0.044 Sum_probs=68.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 043801 20 KATWIELKSLFRLAAPAILVYMLNNLVA-MSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQ 98 (215)
Q Consensus 20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~ 98 (215)
+...+.+++.+-.+.+..+-.+...+.. .-+..+ ... +...+..+.+.+....++...+.+
T Consensus 72 ~~g~R~~~QVlaNg~~a~~~al~~~~~~~~~~~~~-----------------~~~-~~~s~A~a~aDTwASEiG~ls~~~ 133 (226)
T PF01940_consen 72 KGGRRDWWQVLANGGVAALCALLYAFFPSTPAPLL-----------------LLA-FLGSIAAANADTWASEIGVLSKGP 133 (226)
T ss_pred CCCCCChHHhhhccHHHHHHHHHHHHhcccchHHH-----------------HHH-HHHHHHHHhhhHHHHhhhhhcCCC
Confidence 3356778889888887777666555543 011100 122 444566677777888888776432
Q ss_pred cH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh-
Q 043801 99 KY-----DMLGVYLQRSAV-ILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQA- 171 (215)
Q Consensus 99 ~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~- 171 (215)
.+ +++..=.+-+.. .+...++..+..+-....+.. ..+. .....+...++.-+.+..++...+|.
T Consensus 134 P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~~~~--~~~~------~~~~~~~~~G~~Gsl~DSlLGAtlQ~G 205 (226)
T PF01940_consen 134 PRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAFLLG--LISF------PLVLLIALAGFLGSLLDSLLGATLQRG 205 (226)
T ss_pred CeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHHHHH--ccch------HHHHHHHHHHHHHHHHHHHhhHHHhCC
Confidence 22 222211111111 122222222211111111111 1111 11344466677777778888888888
Q ss_pred ---cCCccHHHHHHHHHH
Q 043801 172 ---QSIISPSAYISAATL 186 (215)
Q Consensus 172 ---~g~~~~~~~~~~~~~ 186 (215)
.++....+..+++..
T Consensus 206 ~~~l~N~~VN~lstl~~a 223 (226)
T PF01940_consen 206 RGWLNNDAVNFLSTLIGA 223 (226)
T ss_pred CCCcChhHHHHHHHHHHH
Confidence 455555555555443
No 45
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=48.37 E-value=1.2e+02 Score=22.98 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=20.8
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Q 043801 97 AQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLG 136 (215)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 136 (215)
.+++++..+.+..++...+++-+..++++....++.++++
T Consensus 140 ~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 140 HEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 3555555555555554444443344444555556555554
No 46
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=37.63 E-value=1.4e+02 Score=20.69 Aligned_cols=112 Identities=7% Similarity=-0.014 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 043801 80 MLGMGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAY 159 (215)
Q Consensus 80 ~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 159 (215)
..++.-...-.++|.+|. +++++....++...++..+...+...++++- ..+++.........++...+....
T Consensus 6 ~fp~~fl~~Dii~E~yG~---~~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~----~~~~~~~~vf~~~~ri~~aS~~a~ 78 (145)
T PF02592_consen 6 IFPLTFLITDIISEVYGK---KAARKAIWIGFLANLLFSLLIWIVILLPPAP----FWQEAFESVFGPTPRIALASLIAF 78 (145)
T ss_pred hHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh----hhHHHHHHHHhhhHHHHHHHHHHH
Confidence 344555556778888874 4555555555444444433332222222111 112222333334556666666666
Q ss_pred HHHHHhhHHHhh-cCCc----cHHHHHHHHHHHHHHHHHHHHHH
Q 043801 160 AVNFPIQKLPQA-QSII----SPSAYISAATLVVHVLLSWVAIF 198 (215)
Q Consensus 160 ~~~~~~~~~l~~-~g~~----~~~~~~~~~~~~~~v~~~~~li~ 198 (215)
.+++........ .++. .........+.+..++-+.++..
T Consensus 79 lisq~~d~~if~~lk~~~~~r~lw~R~~~St~isq~iDt~if~~ 122 (145)
T PF02592_consen 79 LISQLLDVYIFSKLKRKTKGRSLWLRNNGSTAISQLIDTVIFIT 122 (145)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666654322 2221 23333333334445555555544
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=30.18 E-value=3.1e+02 Score=22.54 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=29.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH-HcCCC
Q 043801 98 QKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILL-LLGES 138 (215)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-l~~~~ 138 (215)
.++++.+++.+++.+.+.+.......+ ....-|+.. ..+.+
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345779999999999999998877744 555555555 44434
No 48
>PF14184 YrvL: Regulatory protein YrvL
Probab=26.44 E-value=2.2e+02 Score=19.54 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHHHHHHHHHH
Q 043801 110 SAVILTATGIPLMVIYIFSKQILLLLGESS-AIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAYISAATLVV 188 (215)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 188 (215)
.......+....+..++...-+.+++|-+= .......-.+.....+.++..........+.-.+-++.... .....+
T Consensus 7 ~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~i 84 (132)
T PF14184_consen 7 FIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFII 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHHH
Confidence 334444444444455677777888886542 22333344455666677777776666665555433333221 223456
Q ss_pred HHHHHHHHHHHh
Q 043801 189 HVLLSWVAIFKL 200 (215)
Q Consensus 189 ~v~~~~~li~~~ 200 (215)
...+++..++..
T Consensus 85 d~~~t~~~i~~a 96 (132)
T PF14184_consen 85 DFLFTWITIYTA 96 (132)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 49
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=21.89 E-value=3e+02 Score=19.57 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=18.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHH
Q 043801 98 QKYDMLGVYLQRSAVILTATGIPLM 122 (215)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (215)
++.+..+++++..+++..+++++..
T Consensus 23 ~r~k~~~R~i~l~~Ri~~~iSIisL 47 (161)
T PHA02673 23 KRQKAIRRYIKLFFRLMAAIAIIVL 47 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888887777655
No 50
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=21.03 E-value=3.3e+02 Score=19.65 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=50.4
Q ss_pred HHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 043801 90 LCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGE-SSAIASAAAIFVFGLIPQIFAYAVNFPIQKL 168 (215)
Q Consensus 90 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 168 (215)
.+-+...++=+++.++..+.....-...++. +++-+..-+..+..+ +....-.+..|+....+...... +..+
T Consensus 17 ~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~--l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P~sf~~w----yrpl 90 (177)
T PF04144_consen 17 CFYHDISEEIPEEFQRLVKRAYYLWLFLAIT--LFWNFIACLALLIAGGSGSDFGLAILYLLLGTPASFFCW----YRPL 90 (177)
T ss_pred eEEeCHhHhCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcceehHHHHHHHHHhHHHHHHH----HHHH
Confidence 3334444444556666666555433332222 122222223333332 22223333334333333332222 3333
Q ss_pred Hhhc-CCccHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHH
Q 043801 169 PQAQ-SIISPSAYISAATLVVHVLLSWVAIFK-LGWGLLGASLVL 211 (215)
Q Consensus 169 l~~~-g~~~~~~~~~~~~~~~~v~~~~~li~~-~~~G~~G~~~a~ 211 (215)
.+|. .|........+....+.+..+.+..-. .++|..|...+.
T Consensus 91 Y~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p~~G~~G~i~ai 135 (177)
T PF04144_consen 91 YKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIPGWGSCGWITAI 135 (177)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3444 333344444455556666666555543 256777766654
No 51
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=20.82 E-value=3.9e+02 Score=20.43 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=10.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHH
Q 043801 174 IISPSAYISAATLVVHVLLSWVAIF 198 (215)
Q Consensus 174 ~~~~~~~~~~~~~~~~v~~~~~li~ 198 (215)
+.|....-++.+.+.-....+.+..
T Consensus 190 ~~r~~~~Ga~~a~v~w~~~~~~f~~ 214 (259)
T TIGR00765 190 KHRHAFVGAFFAAVLFELAKWLFTF 214 (259)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 52
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=20.20 E-value=2.8e+02 Score=18.54 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=18.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 043801 173 SIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVL 211 (215)
Q Consensus 173 g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~ 211 (215)
++.|......++..+..-.++..=.....+|+-|+|++.
T Consensus 5 ~~~~~~l~~g~laAv~aS~CCi~Pllll~lGvsgaw~~~ 43 (116)
T PF02411_consen 5 KTSNGSLLGGVLAAVLASLCCIGPLLLLSLGVSGAWISN 43 (116)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444443333322221112246888888775
Done!