Query 043801
Match_columns 215
No_of_seqs 158 out of 1848
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 3E-27 1E-31 193.8 15.7 194 20-214 231-431 (460)
2 3mkt_A Multi antimicrobial ext 99.9 6.9E-25 2.4E-29 179.8 12.9 193 21-214 6-202 (460)
3 3mp7_B Preprotein translocase 19.8 1.3E+02 0.0044 16.7 3.3 34 16-49 20-54 (61)
4 4av3_A K(+)-stimulated pyropho 19.8 4.4E+02 0.015 22.9 7.8 64 22-86 601-666 (735)
5 4hkr_A Calcium release-activat 17.4 2.8E+02 0.0097 19.7 17.0 82 58-140 56-145 (214)
6 3cx5_C Cytochrome B-C1 complex 12.9 5.1E+02 0.017 20.4 7.7 55 160-214 93-148 (385)
7 1ug2_A 2610100B20RIK gene prod 10.7 3.1E+02 0.011 16.7 3.6 26 88-113 58-83 (95)
8 1jdm_A Sarcolipin; helix, memb 9.9 1.8E+02 0.0062 13.4 1.8 20 179-198 8-27 (31)
9 1vf5_A Cytochrome B6; photosyn 9.0 5.5E+02 0.019 18.3 7.1 54 161-214 98-152 (215)
10 4b4a_A TATC, SEC-independent p 7.5 6.8E+02 0.023 18.2 5.1 27 109-135 13-39 (249)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.95 E-value=3e-27 Score=193.83 Aligned_cols=194 Identities=16% Similarity=0.135 Sum_probs=183.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 043801 20 KATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQK 99 (215)
Q Consensus 20 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 99 (215)
+++++.+|++++.+.|.+++++...+...+|+.+++++|++++|+|+++.++.+ +...+..+++++..|.+++++|++|
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~-~~~~~~~~~~~a~~p~i~~~~g~~~ 309 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSS-LVFMFPMSIGAAVSIRVGHKLGEQD 309 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456778999999999999999999999999999999999999999999999999 8889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHH
Q 043801 100 YDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPS 178 (215)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 178 (215)
+|++++..+++.+....++++.+++ +++++++.++|.+|++..+.+..++++++++.++.+++.+..+++++.||+|.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 389 (460)
T 3mkt_A 310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389 (460)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 9999999999999999999999966 899999999999888888889999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHH----hc-cchhHHHHHHhhc
Q 043801 179 AYISAATL-VVHVLLSWVAIFK----LG-WGLLGASLVLSLS 214 (215)
Q Consensus 179 ~~~~~~~~-~~~v~~~~~li~~----~~-~G~~G~~~a~~i~ 214 (215)
++.++++. ++++++++++.+. ++ +|..|+|+|+.++
T Consensus 390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~ 431 (460)
T 3mkt_A 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIG 431 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHH
Confidence 99999986 9999999999996 45 9999999999876
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.92 E-value=6.9e-25 Score=179.80 Aligned_cols=193 Identities=16% Similarity=0.304 Sum_probs=181.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQAYGAQKY 100 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 100 (215)
..++..|++++.+.|.+++++...+...+|+.+++++|++++|+++++.++.. +...+..+++.+..|.+++++|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 35678999999999999999999999999999999999999999999999988 88888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCccHHHH
Q 043801 101 DMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKLPQAQSIISPSAY 180 (215)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 180 (215)
|+.++..++++....+++++..+++.+++++..+++.|++..+.+..++++.+++.++........+++|+.||++.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999999776688889999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-h---ccchhHHHHHHhhc
Q 043801 181 ISAATLVVHVLLSWVAIFK-L---GWGLLGASLVLSLS 214 (215)
Q Consensus 181 ~~~~~~~~~v~~~~~li~~-~---~~G~~G~~~a~~i~ 214 (215)
.++++.++|+++++++++. + ++|+.|+++|+.++
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~ 202 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIV 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 9999999999999999975 3 69999999999876
No 3
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=19.81 E-value=1.3e+02 Score=16.73 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=17.8
Q ss_pred HHhHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 043801 16 QRIKKATWIELKSLFRLAA-PAILVYMLNNLVAMS 49 (215)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~i 49 (215)
+.-.+|+++++.++.+... -..+..+...+...+
T Consensus 20 k~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli 54 (61)
T 3mp7_B 20 LVTKKPNWATYKRAAKITGLGIILIGLIGMLIRIV 54 (61)
T ss_dssp HHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777776544 333333344443333
No 4
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=19.80 E-value=4.4e+02 Score=22.91 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043801 22 TWIELKSLFRLAAPAILVYM-LNNLVAMSTQIFCGH-LGNLELAAVSLGNTGIQVFAYGLMLGMGSA 86 (215)
Q Consensus 22 ~~~~~~~~~~~~~p~~~~~~-~~~~~~~i~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 86 (215)
.+.++++...++.-..+-+. ...+.-.+...+++. +|++.++++-+...+.. +...+...=+.+
T Consensus 601 ~kPdy~~cV~I~T~~AlkeMi~p~~l~v~~P~~vg~~~g~~~l~g~L~g~~v~G-~~~Ai~m~n~GG 666 (735)
T 4av3_A 601 AKPDYNRCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSG-AMLAILTANSGG 666 (735)
T ss_dssp ----CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhcCcc
Confidence 34556666666666555544 333444445566666 79999999877777666 444444433333
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=17.37 E-value=2.8e+02 Score=19.70 Aligned_cols=82 Identities=15% Similarity=0.019 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 043801 58 GNLELAAVSLGNTGIQVFAYGLMLGMGSATETLCGQA--------YGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSK 129 (215)
Q Consensus 58 g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (215)
.+.-+.+|++...+.- .+..+..-+++-+.|-+... ..+...++.+.++-.+-.+...+|+++.+.-+..-
T Consensus 56 p~~LLi~fav~Ttllv-~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLV-AVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHH-HHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444788888777666 66666666666666655433 22456678888888888888887777766534444
Q ss_pred HHHHHcCCCHH
Q 043801 130 QILLLLGESSA 140 (215)
Q Consensus 130 ~i~~l~~~~~~ 140 (215)
-+++++..+++
T Consensus 135 ~WVKF~~~~~~ 145 (214)
T 4hkr_A 135 CWVKFYDLSRR 145 (214)
T ss_dssp HHHHHTTTCHH
T ss_pred heEEeecCCcH
Confidence 45677766543
No 6
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=12.90 E-value=5.1e+02 Score=20.43 Aligned_cols=55 Identities=4% Similarity=-0.068 Sum_probs=34.3
Q ss_pred HHHHHhhHHHh-hcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 160 AVNFPIQKLPQ-AQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 160 ~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
..-.+.+++.. +..+++...+..-+...+-......+-+.+.||-.+-|-|+++.
T Consensus 93 iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatViT 148 (385)
T 3cx5_C 93 MFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVIT 148 (385)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHHHHHHH
Confidence 33445555544 45666777777666655555555556666678887777777664
No 7
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=10.70 E-value=3.1e+02 Score=16.67 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=19.8
Q ss_pred HHHHHHHhchhcHHHHHHHHHHHHHH
Q 043801 88 ETLCGQAYGAQKYDMLGVYLQRSAVI 113 (215)
Q Consensus 88 ~~~~s~~~g~~~~~~~~~~~~~~~~~ 113 (215)
...+++.++++..+++++.++..+.+
T Consensus 58 Fa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 58 FSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 45678888888888888888776543
No 8
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=9.89 E-value=1.8e+02 Score=13.36 Aligned_cols=20 Identities=15% Similarity=0.587 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043801 179 AYISAATLVVHVLLSWVAIF 198 (215)
Q Consensus 179 ~~~~~~~~~~~v~~~~~li~ 198 (215)
+..++...++.+++.++++.
T Consensus 8 Lf~NFt~vLI~vlLi~llVr 27 (31)
T 1jdm_A 8 LFLNFTIVLITVILMWLLVR 27 (31)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666553
No 9
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=9.02 E-value=5.5e+02 Score=18.33 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHHhhHHHh-hcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 161 VNFPIQKLPQ-AQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 161 ~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
.-.+.+++.. +..+++...+..-+...+-.....+.-+.+.||-.+-|-++++.
T Consensus 98 ylHi~Rglyygsy~~p~~~~W~~Gv~l~~l~m~~aF~GYvLPwgqmS~wgatVit 152 (215)
T 1vf5_A 98 ILHVFRVYLTGGFKKPRELTWISGVILAVITVSFGVTGYSLPWDQVGYWAVKIVS 152 (215)
T ss_dssp HHHHHHHHHTTSSSSSCSHHHHHHHHHHHHHHHHHHHHTTTTCBHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCCceeHhHHHHHHHHHHHHHcccccCCCccchhhHHHHH
Confidence 3344555544 44555555565555444444444555566677877777777664
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=7.47 E-value=6.8e+02 Score=18.18 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHc
Q 043801 109 RSAVILTATGIPLMVIYIFSKQILLLL 135 (215)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~l~ 135 (215)
+..+....+.+...+++.+.+++..++
T Consensus 13 Rli~~~i~~~v~~~~~~~~~~~i~~~l 39 (249)
T 4b4a_A 13 RLIISIIAFLIGSGIAFYFAKYVFEIL 39 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334466666666543
Done!