Query 043801
Match_columns 215
No_of_seqs 158 out of 1848
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 14:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043801.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043801hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5c2 f.21.1.2 (C:1-261) Mit 11.2 2.3E+02 0.017 19.2 7.5 58 157-214 90-148 (261)
2 d1oeda_ f.36.1.1 (A:) Acetylch 7.9 1.8E+02 0.013 18.7 3.6 29 106-134 195-223 (227)
3 d1m56d_ f.23.8.1 (D:) Bacteria 7.2 1.4E+02 0.01 13.9 3.1 28 95-122 4-31 (42)
4 d1q90b_ f.21.1.2 (B:) Cytochro 7.2 3.1E+02 0.023 17.8 8.2 57 157-213 91-148 (212)
5 d2fyuk1 f.23.15.1 (K:1-53) Sub 7.1 1.6E+02 0.012 14.5 2.7 24 92-115 3-26 (53)
6 d3dhwa1 f.58.1.1 (A:6-208) D-m 5.5 3.5E+02 0.025 16.6 5.8 40 21-60 125-165 (203)
7 d1su0b_ d.224.1.2 (B:) IscU ho 5.1 3.3E+02 0.024 15.9 4.7 28 82-109 61-88 (136)
8 d1ixsa_ a.5.1.1 (A:) DNA helic 4.7 1.9E+02 0.014 13.8 1.5 23 89-111 24-46 (50)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 4.4 1.9E+02 0.014 12.2 3.4 9 202-210 23-31 (33)
10 d1oedb_ f.36.1.1 (B:) Acetylch 4.3 4.1E+02 0.03 17.0 3.8 21 102-122 214-234 (250)
No 1
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.15 E-value=2.3e+02 Score=19.20 Aligned_cols=58 Identities=5% Similarity=-0.035 Sum_probs=35.5
Q ss_pred HHHHHHHHhhHHHh-hcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Q 043801 157 FAYAVNFPIQKLPQ-AQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 214 (215)
Q Consensus 157 ~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i~ 214 (215)
++...-.+.+.++. +.+++|...+.+-+...+.+....+.-+.+.||-.+-|-++++.
T Consensus 90 ~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit 148 (261)
T d3cx5c2 90 FMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVIT 148 (261)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHH
Confidence 33344455556554 44667777777766655555555555566677887777777654
No 2
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.90 E-value=1.8e+02 Score=18.72 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 043801 106 YLQRSAVILTATGIPLMVIYIFSKQILLL 134 (215)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 134 (215)
.+.+.+.+.+.+......+.+|...+.++
T Consensus 195 viDRi~~~~F~l~~ii~~i~if~~~~~~~ 223 (227)
T d1oeda_ 195 VIDHILLCVFMLICIIGTVSVFAGRLIEL 223 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444455544443
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.19 E-value=1.4e+02 Score=13.89 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=14.1
Q ss_pred hchhcHHHHHHHHHHHHHHHHHHHHHHH
Q 043801 95 YGAQKYDMLGVYLQRSAVILTATGIPLM 122 (215)
Q Consensus 95 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (215)
+|+=|.+.-.+.+...+++..-.++.+.
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i 31 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIV 31 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444443
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.19 E-value=3.1e+02 Score=17.81 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=34.8
Q ss_pred HHHHHHHHhhHHHh-hcCCccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhh
Q 043801 157 FAYAVNFPIQKLPQ-AQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSL 213 (215)
Q Consensus 157 ~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~v~~~~~li~~~~~G~~G~~~a~~i 213 (215)
++...-.+.+.++. +.+++|...+.+-+...+......+.-+.+.||-.+-|-++++
T Consensus 91 ~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~ 148 (212)
T d1q90b_ 91 VLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIV 148 (212)
T ss_dssp HHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 33344455555554 4467777777776665555555555566677787777766654
No 5
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.09 E-value=1.6e+02 Score=14.49 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=13.8
Q ss_pred HHHhchhcHHHHHHHHHHHHHHHH
Q 043801 92 GQAYGAQKYDMLGVYLQRSAVILT 115 (215)
Q Consensus 92 s~~~g~~~~~~~~~~~~~~~~~~~ 115 (215)
++..|.+-.+.++..+.....++.
T Consensus 3 ~k~iG~k~~~ia~~wips~~~~G~ 26 (53)
T d2fyuk1 3 TRFLGPRYRQLARNWVPTASLWGA 26 (53)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhh
Confidence 556676666666666655444433
No 6
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=5.49 E-value=3.5e+02 Score=16.64 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChH
Q 043801 21 ATWIELKSLFRLAAPAILVYMLNNLVAMSTQIFCGH-LGNL 60 (215)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~ 60 (215)
+.+..+|-.+....|..+......+...+....+.. .|..
T Consensus 125 ~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 125 PMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred hhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666677778888777777777775555544 5443
No 7
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=5.14 E-value=3.3e+02 Score=15.91 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhchhcHHHHHHHHHH
Q 043801 82 GMGSATETLCGQAYGAQKYDMLGVYLQR 109 (215)
Q Consensus 82 ~~~~~~~~~~s~~~g~~~~~~~~~~~~~ 109 (215)
++++|...++++....++.+++.+....
T Consensus 61 ai~~ASasil~e~i~gk~~~e~~~l~~~ 88 (136)
T d1su0b_ 61 TISTASSSMMTDAVIGKSKEEALALADI 88 (136)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5778888888888888888888776654
No 8
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=4.69 E-value=1.9e+02 Score=13.76 Aligned_cols=23 Identities=0% Similarity=-0.091 Sum_probs=14.1
Q ss_pred HHHHHHhchhcHHHHHHHHHHHH
Q 043801 89 TLCGQAYGAQKYDMLGVYLQRSA 111 (215)
Q Consensus 89 ~~~s~~~g~~~~~~~~~~~~~~~ 111 (215)
..+.+..+++...+...+++.++
T Consensus 24 svVaell~~nP~a~aq~lIr~aL 46 (50)
T d1ixsa_ 24 AVVLDLLAQNPKARAQDLIKEAL 46 (50)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCccccHHHHHHHHH
Confidence 34556666666666666666654
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.45 E-value=1.9e+02 Score=12.20 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=5.2
Q ss_pred cchhHHHHH
Q 043801 202 WGLLGASLV 210 (215)
Q Consensus 202 ~G~~G~~~a 210 (215)
+|+..+.+|
T Consensus 23 ~gv~avf~a 31 (33)
T d1xmec1 23 LGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 366666554
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.29 E-value=4.1e+02 Score=17.00 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043801 102 MLGVYLQRSAVILTATGIPLM 122 (215)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~ 122 (215)
.+-..+.+.+.+.+.+...++
T Consensus 214 ~vA~VlDRlfl~lF~l~~vi~ 234 (250)
T d1oedb_ 214 YVAMVADRLFLYVFFVICSIG 234 (250)
T ss_dssp --CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444333
Done!