BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043802
         (701 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P60289|RPOC2_AMBTC DNA-directed RNA polymerase subunit beta'' OS=Amborella trichopoda
           GN=rpoC2 PE=3 SV=1
          Length = 1373

 Score = 39.7 bits (91), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 31/145 (21%)

Query: 567 TCRLWQLSGIPCSHAC---------------------RCLEELGENIEDNVHQLFSMDQY 605
           T  LW LSG PC  +                      R + +L  N +   H+LF  DQ 
Sbjct: 474 TSHLWVLSGSPCRSSIVPFPLHKDQDQMNVQSLYVEERYISDLSMNNDRVRHKLFGWDQK 533

Query: 606 --RTTYASGMDKLPERSKWQLKLCDEILPPSALDNTSFIADDLYDQTLVPTQNDT-KETH 662
             R +Y SG D++     W     D I P    +N+  +A    ++ ++P Q D  +E  
Sbjct: 534 RGRVSYYSGPDRIISNRNW-----DSIYPLILHENSDLLAKRRRNRFIIPFQYDQEQEKE 588

Query: 663 VEASG--AKVSVDNKFVSSSIYVYL 685
           +   G   K+ +      +SI  Y 
Sbjct: 589 LRPPGIVIKIPIKGILRRNSILAYF 613


>sp|Q1GND0|METK_SPHAL S-adenosylmethionine synthase OS=Sphingopyxis alaskensis (strain
           DSM 13593 / LMG 18877 / RB2256) GN=metK PE=3 SV=1
          Length = 406

 Score = 35.4 bits (80), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 21  NNLHTCINLIASAIDEGTGQWVREHNKGATQSYSDDE-EDFIP---DNNHSVTHLEGYCS 76
           NNLH     IA  +DEG G+     ++G    Y+ DE  DF+P   D +H +  LE   S
Sbjct: 104 NNLHGQSPQIAQGVDEGAGKDEGAGDQGIMFGYASDETPDFMPATLDYSHKI--LERMAS 161

Query: 77  DTDATV 82
           D  A +
Sbjct: 162 DRKAGI 167


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,178,759
Number of Sequences: 539616
Number of extensions: 11001531
Number of successful extensions: 22757
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22756
Number of HSP's gapped (non-prelim): 3
length of query: 701
length of database: 191,569,459
effective HSP length: 125
effective length of query: 576
effective length of database: 124,117,459
effective search space: 71491656384
effective search space used: 71491656384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)