Query 043802
Match_columns 701
No_of_seqs 323 out of 1463
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wj2_A Probable WRKY transcrip 91.2 0.32 1.1E-05 39.0 5.2 40 147-186 37-76 (78)
2 3hot_A Transposable element ma 90.9 5 0.00017 41.4 16.2 59 317-378 185-252 (345)
3 2ayd_A WRKY transcription fact 90.5 0.3 1E-05 39.0 4.5 40 147-186 34-73 (76)
4 3l3u_A POL polyprotein; DNA in 81.8 7.3 0.00025 35.1 9.9 66 304-381 8-73 (163)
5 1c0m_A Protein (integrase); HI 75.5 12 0.00041 36.4 9.8 72 304-382 9-80 (238)
6 1cxq_A Avian sarcoma virus int 75.2 13 0.00044 33.5 9.3 72 304-382 10-81 (162)
7 2rpr_A Flywch-type zinc finger 75.0 3.9 0.00013 33.4 5.0 45 135-186 26-73 (87)
8 3f9k_A Integrase; protein-prot 64.6 31 0.0011 32.5 9.8 65 305-381 59-123 (210)
9 3kks_A Integrase, IN; beta-str 59.2 37 0.0013 29.6 8.8 65 306-382 3-67 (152)
10 1ex4_A Integrase; SH3-like dom 57.5 39 0.0013 32.6 9.3 66 305-382 9-74 (239)
11 1k6y_A Integrase; HIV-1, domai 52.1 74 0.0025 29.7 10.1 66 304-381 57-122 (212)
12 2ezd_A High mobility group pro 47.4 13 0.00046 22.4 2.3 14 649-662 7-20 (26)
13 2lju_A Putative oxidoreductase 46.6 56 0.0019 27.7 7.0 30 112-145 60-89 (108)
14 1q1v_A DEK protein; winged-hel 46.6 74 0.0025 24.7 7.2 45 190-234 10-57 (70)
15 1bco_A MUA domain II, bacterio 42.2 62 0.0021 33.0 8.3 74 304-382 15-96 (327)
16 3av9_A Integrase, IN; protein- 36.9 67 0.0023 29.3 6.9 67 304-382 28-94 (183)
17 2jya_A AGR_C_3324P, uncharacte 36.6 24 0.00081 29.9 3.1 32 112-147 52-83 (106)
18 1fme_A FSD-EY peptide; beta-BE 35.2 26 0.0009 21.0 2.2 19 113-131 7-25 (28)
19 3hph_A Integrase, IN; protein- 32.0 1.4E+02 0.0049 27.8 8.5 66 306-383 61-126 (219)
20 2x78_A Integrase; viral protei 29.1 1.1E+02 0.0036 28.1 6.9 70 305-382 13-83 (200)
21 2lsn_A Reverse transcriptase; 26.2 3.6E+02 0.012 24.3 9.7 73 304-378 6-86 (165)
22 3f2k_A Histone-lysine N-methyl 26.2 1.3E+02 0.0046 28.6 7.2 61 315-378 65-133 (226)
23 2bw3_A Transposase; DNA recomb 25.2 3.1E+02 0.01 29.6 10.8 68 335-406 131-200 (534)
24 1c6v_A Protein (SIV integrase) 24.4 2.2E+02 0.0075 24.6 8.0 65 305-381 9-73 (164)
25 2l0z_A Glycoprotein G2; zinc-b 23.9 29 0.00099 23.7 1.2 15 563-577 21-35 (42)
26 3oym_A PFV integrase, P42IN; p 20.6 2.8E+02 0.0095 28.5 8.9 72 304-382 124-195 (395)
27 2ahq_A Sigma-54, RNA polymeras 20.5 1.7E+02 0.0057 23.1 5.2 48 191-239 15-65 (76)
No 1
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=91.15 E-value=0.32 Score=38.96 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=34.7
Q ss_pred ceEEEEEecCCCceEEEEEEecCCCeEEEEecCCCcccCC
Q 043802 147 DLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHI 186 (701)
Q Consensus 147 ~r~~~~C~~~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~~ 186 (701)
-|-.++|+..|||++-.+.+...+....++++.++|||+.
T Consensus 37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 76 (78)
T 1wj2_A 37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL 76 (78)
T ss_dssp CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence 3556899999999999999987777788889999999975
No 2
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=90.93 E-value=5 Score=41.42 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=40.2
Q ss_pred cccCceEEEEEEecCCCCeeEEEEEEee---cCchhhHHHHHHHHHHHcccCC------CCCeEEEecCCc
Q 043802 317 SVHKSVMLVAAALDGNNDILPIALAEVE---IEDFTSWYFFLNNLNRALRREN------GEGLCIITDGDN 378 (701)
Q Consensus 317 ~~y~~~ll~a~g~d~~~~~~pla~alv~---~E~~es~~wfl~~l~~~~~~~~------~~~~~iisD~~~ 378 (701)
..+.+.++++.+.+..| .+++.+++ .-+.+.|.-+|+.+...+.... +.+.+|+.|...
T Consensus 185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 34566777777888777 57777776 5678888888887655542110 236899999865
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=90.48 E-value=0.3 Score=38.96 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=34.9
Q ss_pred ceEEEEEecCCCceEEEEEEecCCCeEEEEecCCCcccCC
Q 043802 147 DLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHI 186 (701)
Q Consensus 147 ~r~~~~C~~~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~~ 186 (701)
-|--++|+..|||++-.+.+..++....++++.++|||+.
T Consensus 34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence 3556899999999999999987777888899999999975
No 4
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=81.81 E-value=7.3 Score=35.14 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=45.4
Q ss_pred CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHH
Q 043802 304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVL 381 (701)
Q Consensus 304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~ 381 (701)
-..++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+...-+|..+....+ +.+|.||+.....
T Consensus 8 p~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f~ 73 (163)
T 3l3u_A 8 SPGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNFT 73 (163)
T ss_dssp CTTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGGG
T ss_pred CCCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhhh
Confidence 346889999998653 5667778777644 66666 45577666666666555543 4789999988654
No 5
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=75.50 E-value=12 Score=36.42 Aligned_cols=72 Identities=10% Similarity=-0.069 Sum_probs=49.4
Q ss_pred CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHH
Q 043802 304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLE 382 (701)
Q Consensus 304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 382 (701)
-..++.+|.|+.... ++..+.++.+|..-+ +.+|+.+- +++.+.-.-+|+.+....+ .|.+|.||+.....+
T Consensus 9 P~~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 9 PLQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG----RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TTSEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEEECSCHHHHS
T ss_pred CCCEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC----CCcEEEECCCCcccc
Confidence 346899999987643 344566667777655 45677775 7777777766666655544 268999999886643
No 6
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=75.22 E-value=13 Score=33.55 Aligned_cols=72 Identities=10% Similarity=-0.074 Sum_probs=47.7
Q ss_pred CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHH
Q 043802 304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLE 382 (701)
Q Consensus 304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 382 (701)
...++.+|.|+.... +|..+.++.+|..-+ +++|+.+- +.+.+.-.-+|+.+....+ .|.+|.||+.....+
T Consensus 10 p~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 10 PLQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAAQHHWATAIAVLG----RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCCEEEEEEEECGGG-TTSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEECCSCHHHHS
T ss_pred CCCEEEeeeeecccC-CCCEEEEEEEEcCCC-eEEEEECC-CccHHHHHHHHHHHHHHHC----CCeEEEeCCchhhhh
Confidence 346899999987543 345666777887765 44667665 6666665555555544443 367999999986643
No 7
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=75.03 E-value=3.9 Score=33.41 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=33.5
Q ss_pred cCeEEEEeeeCCceEEEEEec---CCCceEEEEEEecCCCeEEEEecCCCcccCC
Q 043802 135 EGFKLCIIENGPDLIHLECSS---LRCDWKIVGAKISTGNSFIVKDISLTHACHI 186 (701)
Q Consensus 135 ~gf~~~~~ks~~~r~~~~C~~---~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~~ 186 (701)
.|+.|...+....+....|.. .+|++++.... . . | .....|||++
T Consensus 26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~---~-~--~-~~~~~HnH~p 73 (87)
T 2rpr_A 26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG---H-R--I-MVMRSHCHQP 73 (87)
T ss_dssp TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET---T-E--E-EECSCCSSCC
T ss_pred CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC---C-C--E-ECCCCcCCCC
Confidence 378888777777788899987 48999988753 2 2 2 2457799987
No 8
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=64.56 E-value=31 Score=32.47 Aligned_cols=65 Identities=14% Similarity=0.010 Sum_probs=42.2
Q ss_pred cceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHH
Q 043802 305 RNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVL 381 (701)
Q Consensus 305 ~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~ 381 (701)
..++.+|-|+..++ +.++.+|..-+ ++.++.+-. ++.+...-+|..+....+ +..|.||+.....
T Consensus 59 ~~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~~~-~~~~~~~~~l~~~~~~~g-----~~~i~sDnG~~F~ 123 (210)
T 3f9k_A 59 LGTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVIPQ-ESGRQTALFLLKLASRWP-----ITHLHTDNGANFT 123 (210)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEESS-CCHHHHHHHHHHHHTTSC-----CSEEEECCCTTTS
T ss_pred CCeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEeCC-cchHHHHHHHHHHHHHcC-----CCEEEeCCCchhh
Confidence 35789999888553 35666777766 566666544 666666655555444433 3359999998654
No 9
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=59.17 E-value=37 Score=29.57 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=45.2
Q ss_pred ceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHH
Q 043802 306 NFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLE 382 (701)
Q Consensus 306 ~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 382 (701)
.++.+|.|+..+ .+.++.+|..-+.. +++.+- +++.+...-+|..+....+ |..|.||+......
T Consensus 3 ~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~g-----p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVIP-EETALQVALCILQLIQRYT-----VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SSCHHHHHHHHHHHHHHSC-----CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEeC-CcCHHHHHHHHHHHHHHhC-----CcEEecCCchHhhH
Confidence 578899998843 25666778776654 666554 6777776666665555543 78999999987765
No 10
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=57.54 E-value=39 Score=32.59 Aligned_cols=66 Identities=20% Similarity=0.076 Sum_probs=38.8
Q ss_pred cceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHH
Q 043802 305 RNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLE 382 (701)
Q Consensus 305 ~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 382 (701)
..++.+|.|+..++ .+++ .+|..-+ +.+|+.+- +++.....-++..+.... . +.+|.||+.....+
T Consensus 9 ~~~w~~D~t~~~g~---~~l~--~vD~~Sr-~i~~~~~~-~~~~~~~~~~~~~~~~~~---~--~~~i~sDnG~eF~s 74 (239)
T 1ex4_A 9 PGIWQLDCTHLEGK---VILV--AVHVASG-YIEAEVIP-AETGQETAYFLLKLAGRW---P--VKTIHTDNGSNFTG 74 (239)
T ss_dssp GGEEEEEEEEETTE---EEEE--EECTTTC-CEEEECCS-SSSTTHHHHHHHHHHHHS---C--CCEEEECCCHHHHC
T ss_pred CCEEEEeccccCCe---EEEE--EEECCCC-eEEEEEeC-CCCHHHHHHHHHHHHHhc---C--CcEEEecCcHHHHH
Confidence 35899999998332 2333 3466554 45677554 455444444443333332 2 68999999886643
No 11
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=52.14 E-value=74 Score=29.69 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=37.8
Q ss_pred CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHH
Q 043802 304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVL 381 (701)
Q Consensus 304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~ 381 (701)
-..++.+|.|+..++| + ++.+|..-+ +.+++.+- +.+.+...-++..+.... . +.+|.||+.....
T Consensus 57 p~~~w~~D~~~~~~~~---~--l~~vD~~Sr-~~~~~~~~-~~~~~~~~~~~~~~~~~~---~--~~~i~sDnG~~f~ 122 (212)
T 1k6y_A 57 SPGIWQLDCTHLEGKV---I--LVAVHVASG-YIEAEVIP-AETGQETAYFLLKLAGRW---P--VKTVHTDNGSNFT 122 (212)
T ss_dssp CTTEEEEEEEEETTEE---E--EEEEETTTT-EEEEEEES-SCCHHHHHHHHHHHHHHS---C--CCEEECCCSTTTT
T ss_pred CCCeeeEEEecCCCeE---E--EEEEEccCC-cEEEEEec-CcchHHHHHHHHHHHHhc---C--CeEEEcCCCcccc
Confidence 3467889999883222 3 333465554 44556554 445555444444443332 2 5899999988653
No 12
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=47.41 E-value=13 Score=22.45 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=10.1
Q ss_pred CCCCCCCCcccccc
Q 043802 649 QTLVPTQNDTKETH 662 (701)
Q Consensus 649 ~~GRPk~~R~~~~~ 662 (701)
+.||||-...++..
T Consensus 7 pRgRpkGSKNk~~~ 20 (26)
T 2ezd_A 7 PRGRPKGSKNKGAA 20 (26)
T ss_dssp CSSCCTTCCCCSCC
T ss_pred CCCCcCcccccCcc
Confidence 88999876666443
No 13
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=46.59 E-value=56 Score=27.71 Aligned_cols=30 Identities=3% Similarity=0.091 Sum_probs=24.5
Q ss_pred ccCCceeCCHHHHHHHHHHHHHHcCeEEEEeeeC
Q 043802 112 MRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENG 145 (701)
Q Consensus 112 ~~vG~~F~s~~e~k~av~~yAi~~gf~~~~~ks~ 145 (701)
-++.+.|+|+|++ ..||.++|..|.+..-.
T Consensus 60 ~qv~L~F~skE~A----iayAek~G~~y~V~ep~ 89 (108)
T 2lju_A 60 QQVCLSFTTRELA----IAYAVAHKIDYTVLQDN 89 (108)
T ss_dssp CCSCEEESSHHHH----HHHHHHTTCEEEEECSS
T ss_pred ccceEecCCHHHH----HHHHHHcCCEEEEecCC
Confidence 4567899999998 46899999999987543
No 14
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=46.55 E-value=74 Score=24.68 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=37.6
Q ss_pred cccchHHHHHHHhhhhhc-C-CCCChHHHHHHHHHHh-CCcCChhHHH
Q 043802 190 FKCTSKWIAANYLHLWKQ-N-PETASVEVKQQIIQTF-GVVCPEWKIF 234 (701)
Q Consensus 190 ~~~ss~~ia~~~~~~i~~-~-~~~~~~~i~~~l~~~~-g~~~s~~~~~ 234 (701)
..+|...|...+.++++. + .+++.++|.+.+.+.+ |++++-.+.+
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~ 57 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDF 57 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHH
Confidence 467888899999999986 3 4789999999999999 9999966544
No 15
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=42.23 E-value=62 Score=32.95 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=51.2
Q ss_pred CcceEEEeceEEeccc---Cc---eEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCe--EEEec
Q 043802 304 CRNFIAVDGWVINSVH---KS---VMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGL--CIITD 375 (701)
Q Consensus 304 ~~~vi~iD~T~~~~~y---~~---~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~--~iisD 375 (701)
...++.+|+|++.... .| .....+.+|...+. ++||.+...++.++..-.|.......+. |. +|.||
T Consensus 15 p~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR~-ivg~~~~~~~~~~~v~~aL~~a~~~~G~----P~~~~i~sD 89 (327)
T 1bco_A 15 AMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRK-ILGWRCDVSENIDSIRLSFMDVVTRYGI----PEDFHITID 89 (327)
T ss_dssp TTTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCC-EEEEEEESSCCHHHHHHHHHHHHHHHCE----ESSCEEECC
T ss_pred CCcEEEecCCEEEEEEECCCCccceeEEEEEEECCCCc-EEEEEEECCCCHHHHHHHHHHHHHhcCC----CCCcEEEee
Confidence 4578999999765421 23 34566667876664 5899999888888877777666555442 55 99999
Q ss_pred CCchHHH
Q 043802 376 GDNGVLE 382 (701)
Q Consensus 376 ~~~~l~~ 382 (701)
+......
T Consensus 90 nG~~f~s 96 (327)
T 1bco_A 90 NTRGAAN 96 (327)
T ss_dssp CTTSTTT
T ss_pred Cchhhcc
Confidence 9886643
No 16
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=36.91 E-value=67 Score=29.33 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=40.4
Q ss_pred CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHH
Q 043802 304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLE 382 (701)
Q Consensus 304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 382 (701)
-..++.+|.|+..++| ++ +.+|..-+.. +|+.+- +++.+...-++..+.... . +.+|.||+.....+
T Consensus 28 p~~~w~~D~~~~~g~~---~l--~~vD~~Sr~~-~~~~~~-~~~~~~~~~~~~~~~~~~---~--~~~i~sDnG~ef~s 94 (183)
T 3av9_A 28 SPGIWQLDCTHLEGKV---IL--VAVHVASGYI-EAEVIP-AETGQETAYFLLKLAGRW---P--VKTVHTDNGSNFTS 94 (183)
T ss_dssp CTTEEEEEEEEETTEE---EE--EEEETTTTEE-EEEEES-SCCHHHHHHHHHHHHHHS---C--CCEEECSSHHHHHC
T ss_pred CCCEEEEeccccCCcE---EE--EEEECCCCCE-EEEEeC-CccchHHHHHHHHHHHHc---C--CcEEEecCchhcch
Confidence 4578999999883332 33 3447666654 676554 455554444444443333 2 48999999887654
No 17
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=36.63 E-value=24 Score=29.91 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=25.1
Q ss_pred ccCCceeCCHHHHHHHHHHHHHHcCeEEEEeeeCCc
Q 043802 112 MRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPD 147 (701)
Q Consensus 112 ~~vG~~F~s~~e~k~av~~yAi~~gf~~~~~ks~~~ 147 (701)
-++.+.|+|+|++ ..||.++|..|.+..-...
T Consensus 52 ~qv~L~F~skE~A----iayAek~G~~y~V~ep~~~ 83 (106)
T 2jya_A 52 QQVKLTFETQEQA----EAYAQRKGIEYRVILPKEA 83 (106)
T ss_dssp EEEEEEESSHHHH----HHHHHHHTCEEEECCCTTC
T ss_pred ccceEecCCHHHH----HHHHHHcCCEEEEeCCCcC
Confidence 4567889999998 4689999999998764443
No 18
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=35.20 E-value=26 Score=20.98 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=16.9
Q ss_pred cCCceeCCHHHHHHHHHHH
Q 043802 113 RQGQLFRDEFQFRRAVEVF 131 (701)
Q Consensus 113 ~vG~~F~s~~e~k~av~~y 131 (701)
..|.+|.+..++++++..|
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 5799999999999999765
No 19
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=31.99 E-value=1.4e+02 Score=27.83 Aligned_cols=66 Identities=9% Similarity=0.025 Sum_probs=43.6
Q ss_pred ceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHHH
Q 043802 306 NFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEA 383 (701)
Q Consensus 306 ~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~A 383 (701)
.++.+|.|+..++ +.++.+|..-+.. .++.+ .+++.+...-+|..+....+ |.+|.||+.......
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g-----p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAERV-KGETGQEFRVQTMKWYAMFA-----PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SCCCHHHHHHHHHHHHHHHC-----CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEEe-CCCCHHHHHHHHHHHHHHhC-----CcEEEeCCCchhhhH
Confidence 5788999876433 5667778777655 56654 45566555555555544443 679999999877643
No 20
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=29.12 E-value=1.1e+02 Score=28.14 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=44.7
Q ss_pred cceEEEec-eEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHH
Q 043802 305 RNFIAVDG-WVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLE 382 (701)
Q Consensus 305 ~~vi~iD~-T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 382 (701)
-.++.+|- ++.... +|..++++.+|..-+. .+++.+ .+.+.+...-+|+ .++.. +.|.+|.||+.....+
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~---~~~~~--g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLN---VLTSI--AIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHH---HHTTT--CCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHH---HHHHh--CCCcEEEecCCcceeh
Confidence 35788886 444433 5567777888877654 466666 6666665544444 33332 3489999999987654
No 21
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=26.21 E-value=3.6e+02 Score=24.34 Aligned_cols=73 Identities=15% Similarity=-0.023 Sum_probs=42.0
Q ss_pred CcceEEEeceEEecccC-----ceEEEEEEecCCCCeeEEEEEEeecCchhhH---HHHHHHHHHHcccCCCCCeEEEec
Q 043802 304 CRNFIAVDGWVINSVHK-----SVMLVAAALDGNNDILPIALAEVEIEDFTSW---YFFLNNLNRALRRENGEGLCIITD 375 (701)
Q Consensus 304 ~~~vi~iD~T~~~~~y~-----~~ll~a~g~d~~~~~~pla~alv~~E~~es~---~wfl~~l~~~~~~~~~~~~~iisD 375 (701)
+.=||+.||..+-|... +=.-++++.++....+.-++........+.. .-+...|+.++.... ++.|.||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~~--~v~I~TD 83 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPG--PVLVITD 83 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSSS--CEEEEES
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCCC--eEEEEeC
Confidence 44578999999887542 3344555555555555556666554444443 223333334444333 7999999
Q ss_pred CCc
Q 043802 376 GDN 378 (701)
Q Consensus 376 ~~~ 378 (701)
-.=
T Consensus 84 S~Y 86 (165)
T 2lsn_A 84 SFY 86 (165)
T ss_dssp CHH
T ss_pred hHH
Confidence 754
No 22
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=26.19 E-value=1.3e+02 Score=28.57 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=37.9
Q ss_pred EecccCceEEEEEEecCCCCeeEEEEEEee---cCchhhHHHHHHHHHHHc----ccC-CCCCeEEEecCCc
Q 043802 315 INSVHKSVMLVAAALDGNNDILPIALAEVE---IEDFTSWYFFLNNLNRAL----RRE-NGEGLCIITDGDN 378 (701)
Q Consensus 315 ~~~~y~~~ll~a~g~d~~~~~~pla~alv~---~E~~es~~wfl~~l~~~~----~~~-~~~~~~iisD~~~ 378 (701)
.++++.+.+++.++.+++|.+ ++.+++ .-|.+.|.-+|+.+...+ +.. ...+.+++-|..+
T Consensus 65 ~~~~~~~~vmv~~~~s~~G~~---~~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~ 133 (226)
T 3f2k_A 65 KPILHPKKVMVTIWWSAAGLI---HYSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNAR 133 (226)
T ss_dssp ----CCCEEEEEEEEETTEEE---EEEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCH
T ss_pred ccccCCcceEEEEEeecCCcE---EEEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCc
Confidence 455777889999999988865 445554 556788888877654333 111 1236788999865
No 23
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=25.19 E-value=3.1e+02 Score=29.61 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=44.0
Q ss_pred eeEEEEEEeec--CchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHHHHHhhCCCcceeechhhHHHHHHH
Q 043802 335 ILPIALAEVEI--EDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLV 406 (701)
Q Consensus 335 ~~pla~alv~~--E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~ 406 (701)
..+|++.-+.. .+.++..-.+..+.+..+.....-+.++||....+..|++.. .|..|..|.+.-+.+
T Consensus 131 ~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~ 200 (534)
T 2bw3_A 131 DLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLE 200 (534)
T ss_dssp EEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHH
T ss_pred EEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHH
Confidence 34667766663 455655544444444444332125678999999888887653 588999999887654
No 24
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=24.44 E-value=2.2e+02 Score=24.58 Aligned_cols=65 Identities=15% Similarity=-0.012 Sum_probs=40.2
Q ss_pred cceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHH
Q 043802 305 RNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVL 381 (701)
Q Consensus 305 ~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~ 381 (701)
..++.+|.|+. +|. +.++.+|..-+ +.+++.+- +.+.+.+.-++..+.... + |.+|.||+.....
T Consensus 9 ~~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~~~-~~~~~~~~~~~~~~~~~~---~--~~~i~sDnG~~f~ 73 (164)
T 1c6v_A 9 LGTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEVIP-QETGRQTALFLLKLAGRW---P--ITHLHTDNGANFA 73 (164)
T ss_dssp TTEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEECS-SCSHHHHHHHHHHHHTTS---C--CCEEECCCCSSTT
T ss_pred CCEEEEeeccc----CCE-EEEEEEEccCC-EEEEEEcC-CCchHHHHHHHHHHHHhc---C--CCEEEeCCchhhh
Confidence 35789999988 333 33344887666 45666544 556665555544443332 2 6899999987653
No 25
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=23.87 E-value=29 Score=23.74 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=13.1
Q ss_pred CceeccccccccCCC
Q 043802 563 SMTCTCRLWQLSGIP 577 (701)
Q Consensus 563 ~~tCsC~~~~~~GiP 577 (701)
...|+|+.|...|.|
T Consensus 21 ~~~C~CG~y~~~~kp 35 (42)
T 2l0z_A 21 LGGCRCGKYPNLKKP 35 (42)
T ss_dssp TSSBTTTTBCCCCCC
T ss_pred CceeccccccCCCCc
Confidence 467999999999887
No 26
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=20.56 E-value=2.8e+02 Score=28.45 Aligned_cols=72 Identities=13% Similarity=-0.019 Sum_probs=43.9
Q ss_pred CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHH
Q 043802 304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLE 382 (701)
Q Consensus 304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 382 (701)
.-.++.+|-+.....-++..+.++.+|..-+. ..++.+-. .+.+.-..+|..+. . .+.|..|+||+.....+
T Consensus 124 p~~~~~~D~~~~~~~~~g~~y~l~~vD~~sr~-~~~~~~~~-~~~~~~~~~l~~~~-~----~g~p~~i~sDnG~~f~s 195 (395)
T 3oym_A 124 PFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGF-TWLYPTKA-PSTSATVKSLNVLT-S----IAIPKVIHSDQGAAFTS 195 (395)
T ss_dssp TTSEEEEEEECCCSCBTTBCEEEEEEETTTCC-EEEEEESS-SCHHHHHHHHHHHT-T----TCCCSEEEECSCHHHHS
T ss_pred CceEEEEEEecccCCCCCccEEEEEEecCCce-EEEEEecC-CcHHHHHHHhhHhh-c----cCCceEEEeCCCCceec
Confidence 34678899665333335677777888876654 56666654 44444444442222 1 13489999999986653
No 27
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=20.53 E-value=1.7e+02 Score=23.09 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=36.6
Q ss_pred ccchHHHHHHHhhhhhc-CC--CCChHHHHHHHHHHhCCcCChhHHHHHHHH
Q 043802 191 KCTSKWIAANYLHLWKQ-NP--ETASVEVKQQIIQTFGVVCPEWKIFKAEKR 239 (701)
Q Consensus 191 ~~ss~~ia~~~~~~i~~-~~--~~~~~~i~~~l~~~~g~~~s~~~~~rak~~ 239 (701)
..|+..|-..++++|.+ ++ -++-.+|.+.|+++ |+.++..++.+.|+.
T Consensus 15 ~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRRTVaKYRe~ 65 (76)
T 2ahq_A 15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARRTVAKYREM 65 (76)
T ss_dssp SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHHHHHHHHHH
Confidence 34677788888888876 33 37778888888766 999999988776653
Done!