Query 043805
Match_columns 555
No_of_seqs 445 out of 3252
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.6E-79 3.5E-84 704.3 50.8 519 13-540 8-542 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-36 4.8E-41 331.1 26.0 302 194-502 161-496 (889)
3 PLN03194 putative disease resi 100.0 3.6E-37 7.9E-42 268.1 15.2 158 11-183 20-179 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 5.5E-35 1.2E-39 289.0 15.1 262 196-462 1-279 (287)
5 PRK04841 transcriptional regul 99.8 7.6E-19 1.6E-23 201.2 26.8 298 185-505 8-336 (903)
6 smart00255 TIR Toll - interleu 99.8 7.5E-20 1.6E-24 160.2 11.5 133 17-151 1-137 (140)
7 COG2909 MalT ATP-dependent tra 99.8 3E-18 6.5E-23 179.4 20.6 302 184-508 12-345 (894)
8 PF01582 TIR: TIR domain; Int 99.8 5.1E-20 1.1E-24 161.0 3.9 128 20-148 1-139 (141)
9 PF13676 TIR_2: TIR domain; PD 99.7 1.4E-17 3E-22 137.1 3.4 87 20-113 1-87 (102)
10 COG3899 Predicted ATPase [Gene 99.6 3.1E-15 6.8E-20 165.7 17.3 326 192-530 1-407 (849)
11 PRK00411 cdc6 cell division co 99.5 1.5E-12 3.2E-17 134.7 24.4 289 182-481 21-358 (394)
12 TIGR02928 orc1/cdc6 family rep 99.4 6.8E-11 1.5E-15 121.0 28.0 286 186-482 10-351 (365)
13 PF01637 Arch_ATPase: Archaeal 99.4 3.2E-13 6.9E-18 129.0 9.4 197 193-394 1-234 (234)
14 TIGR00635 ruvB Holliday juncti 99.4 7.6E-12 1.6E-16 124.7 18.8 255 191-482 4-290 (305)
15 PRK00080 ruvB Holliday junctio 99.4 2.9E-12 6.2E-17 128.6 12.5 259 187-482 21-311 (328)
16 TIGR03015 pepcterm_ATPase puta 99.3 6.2E-11 1.3E-15 115.9 19.3 180 213-398 42-242 (269)
17 COG3903 Predicted ATPase [Gene 99.3 1.2E-12 2.5E-17 128.1 6.4 284 213-505 13-318 (414)
18 PF05729 NACHT: NACHT domain 99.2 2.5E-10 5.4E-15 102.8 11.6 142 215-363 1-163 (166)
19 PTZ00112 origin recognition co 99.0 6.8E-08 1.5E-12 103.4 22.5 285 186-482 750-1087(1164)
20 PRK13342 recombination factor 99.0 2.5E-08 5.4E-13 103.3 18.8 182 187-397 8-199 (413)
21 PF14516 AAA_35: AAA-like doma 99.0 3.8E-07 8.2E-12 91.4 26.0 285 185-497 5-329 (331)
22 PRK06893 DNA replication initi 99.0 1.5E-08 3.2E-13 96.1 14.3 183 185-398 10-207 (229)
23 PRK07003 DNA polymerase III su 99.0 3.9E-08 8.5E-13 104.7 18.7 195 188-394 13-221 (830)
24 PTZ00202 tuzin; Provisional 98.9 1.2E-07 2.7E-12 94.3 20.8 167 185-363 256-434 (550)
25 COG2256 MGS1 ATPase related to 98.9 1.5E-08 3.2E-13 99.0 12.9 221 187-436 20-267 (436)
26 KOG3678 SARM protein (with ste 98.9 7.7E-09 1.7E-13 101.5 10.8 93 14-112 609-709 (832)
27 PRK12402 replication factor C 98.9 4E-08 8.8E-13 99.4 16.7 202 188-395 12-227 (337)
28 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.5E-08 3.3E-13 96.2 12.8 178 189-398 13-205 (226)
29 PRK14963 DNA polymerase III su 98.9 1.3E-07 2.8E-12 99.3 19.8 192 188-392 11-215 (504)
30 COG1474 CDC6 Cdc6-related prot 98.9 1.5E-06 3.3E-11 87.5 26.7 285 186-482 12-335 (366)
31 PRK07471 DNA polymerase III su 98.9 2.4E-07 5.2E-12 93.4 20.6 198 186-395 14-239 (365)
32 PRK14961 DNA polymerase III su 98.9 1.7E-07 3.7E-12 95.2 19.6 182 188-392 13-218 (363)
33 PRK14960 DNA polymerase III su 98.9 1.3E-07 2.8E-12 99.8 18.8 193 188-392 12-217 (702)
34 PRK00440 rfc replication facto 98.9 9.8E-08 2.1E-12 95.8 17.3 186 188-393 14-202 (319)
35 PRK04195 replication factor C 98.8 1.8E-07 3.9E-12 98.8 18.2 185 187-396 10-204 (482)
36 PRK12323 DNA polymerase III su 98.8 2.1E-07 4.6E-12 97.9 18.3 200 187-393 12-224 (700)
37 PLN03025 replication factor C 98.8 1.2E-07 2.7E-12 94.7 16.0 186 187-392 9-198 (319)
38 PRK14949 DNA polymerase III su 98.8 9.2E-08 2E-12 103.9 15.8 187 188-394 13-220 (944)
39 PRK14956 DNA polymerase III su 98.8 3.8E-07 8.3E-12 93.6 19.2 189 187-390 14-218 (484)
40 PRK08903 DnaA regulatory inact 98.8 1.2E-07 2.6E-12 90.0 13.8 177 187-398 14-203 (227)
41 PRK08691 DNA polymerase III su 98.8 2.5E-07 5.5E-12 98.5 16.9 196 187-394 12-220 (709)
42 PF05496 RuvB_N: Holliday junc 98.8 1.3E-07 2.8E-12 86.5 12.7 183 186-399 19-226 (233)
43 PRK08727 hypothetical protein; 98.7 2E-07 4.4E-12 88.6 14.4 172 189-392 17-202 (233)
44 PRK09112 DNA polymerase III su 98.7 4.3E-07 9.3E-12 91.1 17.2 198 185-395 17-241 (351)
45 PRK08084 DNA replication initi 98.7 4.6E-07 9.9E-12 86.3 16.6 176 190-397 21-212 (235)
46 TIGR02397 dnaX_nterm DNA polym 98.7 8.6E-07 1.9E-11 90.4 19.7 187 187-396 10-220 (355)
47 PRK14962 DNA polymerase III su 98.7 8.5E-07 1.8E-11 92.4 19.6 187 187-396 10-221 (472)
48 PRK06645 DNA polymerase III su 98.7 8.2E-07 1.8E-11 92.9 19.2 194 187-391 17-226 (507)
49 PF13191 AAA_16: AAA ATPase do 98.7 2.6E-08 5.7E-13 91.3 7.1 50 192-241 1-51 (185)
50 PRK14964 DNA polymerase III su 98.7 7.6E-07 1.6E-11 92.4 18.3 181 188-391 10-214 (491)
51 PRK07994 DNA polymerase III su 98.7 2.7E-07 5.9E-12 98.6 15.2 193 188-392 13-218 (647)
52 PRK14951 DNA polymerase III su 98.7 1.1E-06 2.4E-11 93.7 19.5 200 188-394 13-225 (618)
53 PF13401 AAA_22: AAA domain; P 98.7 7.9E-08 1.7E-12 82.7 8.7 113 214-332 4-125 (131)
54 PRK07940 DNA polymerase III su 98.7 5.9E-07 1.3E-11 91.4 16.2 173 191-394 5-213 (394)
55 PRK14957 DNA polymerase III su 98.7 7.6E-07 1.6E-11 93.8 17.3 183 188-394 13-221 (546)
56 PRK07764 DNA polymerase III su 98.7 1.8E-06 3.9E-11 95.5 20.3 188 188-391 12-218 (824)
57 PRK05642 DNA replication initi 98.7 1.1E-06 2.3E-11 83.7 16.2 155 214-398 45-212 (234)
58 PRK14958 DNA polymerase III su 98.6 1E-06 2.2E-11 92.8 17.3 183 188-393 13-219 (509)
59 PF13173 AAA_14: AAA domain 98.6 1.4E-07 3.1E-12 80.8 8.6 118 215-354 3-126 (128)
60 PRK09111 DNA polymerase III su 98.6 1.9E-06 4.1E-11 92.2 18.7 197 187-395 20-234 (598)
61 PRK14955 DNA polymerase III su 98.6 1.5E-06 3.3E-11 89.4 17.1 200 187-393 12-227 (397)
62 PRK05564 DNA polymerase III su 98.6 1.7E-06 3.7E-11 86.3 16.8 178 191-393 4-189 (313)
63 PRK05896 DNA polymerase III su 98.6 1.8E-06 4E-11 91.1 17.5 192 187-391 12-217 (605)
64 PRK13341 recombination factor 98.6 2.9E-06 6.3E-11 92.7 19.5 176 187-392 24-215 (725)
65 PF00308 Bac_DnaA: Bacterial d 98.6 1.9E-06 4.1E-11 80.9 15.9 162 214-396 34-210 (219)
66 TIGR00678 holB DNA polymerase 98.6 1.8E-06 3.9E-11 79.4 15.3 160 202-389 3-186 (188)
67 PRK14087 dnaA chromosomal repl 98.6 8.6E-06 1.9E-10 84.8 21.8 168 214-398 141-323 (450)
68 PRK14952 DNA polymerase III su 98.6 6E-06 1.3E-10 87.9 20.5 189 188-389 10-214 (584)
69 PRK09087 hypothetical protein; 98.6 6.7E-07 1.5E-11 84.3 11.9 144 214-398 44-199 (226)
70 PRK14970 DNA polymerase III su 98.6 5.3E-06 1.1E-10 84.9 19.4 185 187-393 13-208 (367)
71 cd00009 AAA The AAA+ (ATPases 98.6 8.3E-07 1.8E-11 77.6 11.7 54 194-249 1-54 (151)
72 PRK14950 DNA polymerase III su 98.6 3.8E-06 8.2E-11 90.7 19.0 197 188-396 13-223 (585)
73 TIGR01242 26Sp45 26S proteasom 98.5 4.5E-07 9.8E-12 92.4 10.9 177 188-388 119-328 (364)
74 COG2255 RuvB Holliday junction 98.5 3.4E-06 7.4E-11 78.9 15.3 261 187-486 22-315 (332)
75 PRK14959 DNA polymerase III su 98.5 5.2E-06 1.1E-10 88.1 18.8 198 188-398 13-225 (624)
76 PRK14954 DNA polymerase III su 98.5 7.9E-06 1.7E-10 87.6 20.3 199 187-391 12-225 (620)
77 PRK14953 DNA polymerase III su 98.5 7.9E-06 1.7E-10 85.7 19.8 195 187-395 12-221 (486)
78 TIGR02639 ClpA ATP-dependent C 98.5 1.5E-06 3.3E-11 96.4 15.3 158 187-363 178-358 (731)
79 PRK14969 DNA polymerase III su 98.5 2.3E-06 5.1E-11 90.7 15.9 179 188-389 13-215 (527)
80 PRK00149 dnaA chromosomal repl 98.5 2.3E-05 4.9E-10 82.3 22.4 160 214-394 148-322 (450)
81 TIGR03345 VI_ClpV1 type VI sec 98.5 2.3E-06 4.9E-11 95.8 15.7 182 187-387 183-389 (852)
82 KOG2028 ATPase related to the 98.5 1.2E-06 2.6E-11 84.3 11.1 177 187-388 134-330 (554)
83 PRK06305 DNA polymerase III su 98.5 1.4E-05 3.1E-10 83.2 19.6 184 188-392 14-220 (451)
84 PRK07133 DNA polymerase III su 98.4 1.3E-05 2.8E-10 86.5 19.1 191 187-392 14-217 (725)
85 PRK08451 DNA polymerase III su 98.4 1.2E-05 2.6E-10 84.4 18.3 186 188-394 11-218 (535)
86 PRK03992 proteasome-activating 98.4 3E-06 6.5E-11 86.9 13.4 175 189-387 129-336 (389)
87 PRK06647 DNA polymerase III su 98.4 2.1E-05 4.5E-10 83.9 20.1 190 187-393 12-219 (563)
88 CHL00095 clpC Clp protease ATP 98.4 2.4E-06 5.2E-11 96.0 13.5 154 190-362 178-353 (821)
89 PRK14088 dnaA chromosomal repl 98.4 9.1E-06 2E-10 84.5 16.8 162 214-395 130-306 (440)
90 PF08937 DUF1863: MTH538 TIR-l 98.4 6.5E-07 1.4E-11 76.7 6.8 90 18-112 1-107 (130)
91 PRK14948 DNA polymerase III su 98.4 3.3E-05 7.1E-10 83.4 21.2 199 188-396 13-224 (620)
92 PRK05563 DNA polymerase III su 98.4 2.8E-05 6.1E-10 83.2 20.3 192 187-391 12-217 (559)
93 KOG0989 Replication factor C, 98.4 2.5E-06 5.4E-11 80.7 10.3 187 187-388 32-224 (346)
94 PRK14971 DNA polymerase III su 98.4 3.1E-05 6.6E-10 83.6 19.9 182 188-392 14-220 (614)
95 PRK06620 hypothetical protein; 98.4 6.1E-06 1.3E-10 77.1 12.7 137 215-395 45-190 (214)
96 PF10443 RNA12: RNA12 protein; 98.3 0.00011 2.5E-09 73.7 21.7 195 295-503 149-395 (431)
97 PHA02544 44 clamp loader, smal 98.3 9.6E-06 2.1E-10 81.2 14.6 152 187-362 17-172 (316)
98 PRK14965 DNA polymerase III su 98.3 2.2E-05 4.7E-10 84.5 17.5 191 188-394 13-221 (576)
99 PRK14086 dnaA chromosomal repl 98.3 0.00012 2.6E-09 77.7 22.5 162 214-396 314-490 (617)
100 PRK05707 DNA polymerase III su 98.3 1.9E-05 4.1E-10 78.6 15.8 154 213-394 21-203 (328)
101 COG3267 ExeA Type II secretory 98.3 4.5E-05 9.7E-10 70.7 16.9 181 211-397 48-248 (269)
102 TIGR00362 DnaA chromosomal rep 98.3 2E-05 4.4E-10 81.6 15.9 161 214-395 136-311 (405)
103 TIGR03346 chaperone_ClpB ATP-d 98.3 1.2E-05 2.6E-10 90.7 15.2 158 187-363 169-349 (852)
104 PRK10865 protein disaggregatio 98.3 7.7E-06 1.7E-10 91.9 13.5 158 187-363 174-354 (857)
105 TIGR02881 spore_V_K stage V sp 98.3 7.8E-06 1.7E-10 79.3 11.3 133 213-364 41-192 (261)
106 PRK12422 chromosomal replicati 98.2 5.4E-05 1.2E-09 78.6 17.7 154 214-388 141-307 (445)
107 PRK07399 DNA polymerase III su 98.2 0.00013 2.9E-09 72.2 19.0 193 191-395 4-222 (314)
108 TIGR02903 spore_lon_C ATP-depe 98.2 3.4E-05 7.4E-10 83.6 15.9 50 187-238 150-199 (615)
109 TIGR03689 pup_AAA proteasome A 98.2 2.3E-05 4.9E-10 81.9 13.7 163 188-363 179-378 (512)
110 PF05621 TniB: Bacterial TniB 98.2 6.9E-05 1.5E-09 72.1 15.7 200 191-394 34-261 (302)
111 PF05673 DUF815: Protein of un 98.2 0.00013 2.8E-09 68.0 17.0 127 186-338 22-156 (249)
112 PRK11034 clpA ATP-dependent Cl 98.2 1.3E-05 2.9E-10 88.0 12.2 154 190-363 185-362 (758)
113 PTZ00454 26S protease regulato 98.1 5E-05 1.1E-09 77.6 13.8 177 188-388 142-351 (398)
114 PF08357 SEFIR: SEFIR domain; 98.1 4.7E-06 1E-10 73.5 5.4 65 19-83 2-70 (150)
115 CHL00176 ftsH cell division pr 98.1 6.3E-05 1.4E-09 81.3 14.3 174 189-386 181-386 (638)
116 PF00004 AAA: ATPase family as 98.1 1.6E-05 3.5E-10 68.2 8.1 23 217-239 1-23 (132)
117 TIGR02880 cbbX_cfxQ probable R 98.0 9.7E-05 2.1E-09 72.3 14.3 130 216-364 60-209 (284)
118 TIGR01241 FtsH_fam ATP-depende 98.0 4.6E-05 9.9E-10 81.0 12.9 183 188-394 52-267 (495)
119 COG1222 RPT1 ATP-dependent 26S 98.0 9.1E-05 2E-09 71.8 13.4 172 192-388 152-357 (406)
120 KOG2227 Pre-initiation complex 98.0 0.0001 2.2E-09 73.9 14.0 171 188-363 147-338 (529)
121 PRK08769 DNA polymerase III su 98.0 0.00025 5.4E-09 70.1 16.0 95 293-395 112-209 (319)
122 PTZ00361 26 proteosome regulat 98.0 2.1E-05 4.5E-10 81.0 8.8 176 189-388 181-389 (438)
123 COG1373 Predicted ATPase (AAA+ 98.0 0.00067 1.5E-08 69.7 19.6 238 196-480 22-269 (398)
124 CHL00195 ycf46 Ycf46; Provisio 98.0 9.9E-05 2.1E-09 77.2 13.0 177 190-388 227-429 (489)
125 PRK06871 DNA polymerase III su 97.9 0.00047 1E-08 68.2 16.4 170 201-391 12-200 (325)
126 COG0593 DnaA ATPase involved i 97.9 0.00019 4E-09 72.5 13.4 155 213-387 112-279 (408)
127 PRK07993 DNA polymerase III su 97.9 0.00043 9.3E-09 69.2 15.5 162 200-391 11-201 (334)
128 KOG0741 AAA+-type ATPase [Post 97.9 0.00013 2.9E-09 73.9 11.6 131 212-362 536-685 (744)
129 COG2812 DnaX DNA polymerase II 97.9 0.00032 6.9E-09 73.0 14.8 189 188-388 13-214 (515)
130 PRK08116 hypothetical protein; 97.9 9.7E-05 2.1E-09 71.6 10.5 102 215-332 115-220 (268)
131 PRK08058 DNA polymerase III su 97.9 0.00025 5.4E-09 71.1 13.7 147 192-362 6-181 (329)
132 TIGR00602 rad24 checkpoint pro 97.9 0.0002 4.4E-09 76.9 13.7 53 187-239 80-135 (637)
133 KOG2543 Origin recognition com 97.8 0.00036 7.9E-09 68.3 13.7 163 190-363 5-193 (438)
134 COG2607 Predicted ATPase (AAA+ 97.8 0.00046 1E-08 63.3 13.0 58 187-244 56-115 (287)
135 PRK06090 DNA polymerase III su 97.8 0.0014 3.1E-08 64.7 17.3 162 200-394 12-201 (319)
136 CHL00181 cbbX CbbX; Provisiona 97.8 0.001 2.2E-08 65.2 16.2 131 215-364 60-210 (287)
137 TIGR01243 CDC48 AAA family ATP 97.8 0.00029 6.4E-09 78.6 14.0 174 191-388 453-657 (733)
138 COG0542 clpA ATP-binding subun 97.8 0.00043 9.3E-09 75.1 14.3 157 188-363 167-346 (786)
139 cd01128 rho_factor Transcripti 97.8 7.4E-05 1.6E-09 71.2 7.7 90 214-305 16-114 (249)
140 KOG0735 AAA+-type ATPase [Post 97.8 0.00064 1.4E-08 71.5 14.9 161 214-394 431-616 (952)
141 PRK06964 DNA polymerase III su 97.8 0.0019 4E-08 64.6 17.7 91 294-394 132-225 (342)
142 PLN00020 ribulose bisphosphate 97.7 0.00069 1.5E-08 66.9 14.0 152 212-389 146-333 (413)
143 TIGR01243 CDC48 AAA family ATP 97.7 0.00028 6.1E-09 78.8 13.0 176 189-388 176-381 (733)
144 KOG0744 AAA+-type ATPase [Post 97.7 0.00021 4.5E-09 68.3 9.8 36 214-249 177-216 (423)
145 PRK09376 rho transcription ter 97.7 6.4E-05 1.4E-09 75.0 6.6 91 213-305 168-267 (416)
146 PRK08181 transposase; Validate 97.7 6E-05 1.3E-09 72.7 6.3 35 215-249 107-141 (269)
147 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0014 3E-08 73.8 18.0 50 191-240 566-622 (852)
148 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00044 9.5E-09 71.5 12.6 174 190-387 189-395 (802)
149 PF01695 IstB_IS21: IstB-like 97.7 4E-05 8.6E-10 69.4 4.7 36 214-249 47-82 (178)
150 PRK12377 putative replication 97.7 0.00085 1.8E-08 63.9 13.3 36 214-249 101-136 (248)
151 PF13177 DNA_pol3_delta2: DNA 97.7 0.00059 1.3E-08 60.8 11.5 139 195-351 1-162 (162)
152 TIGR03346 chaperone_ClpB ATP-d 97.6 0.0044 9.6E-08 70.3 20.8 51 191-241 565-622 (852)
153 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0014 3.1E-08 63.5 14.7 25 215-239 22-46 (262)
154 PRK10536 hypothetical protein; 97.6 0.00047 1E-08 65.1 10.5 135 191-332 55-212 (262)
155 PRK07952 DNA replication prote 97.6 0.0022 4.8E-08 60.9 15.0 36 214-249 99-134 (244)
156 PRK10865 protein disaggregatio 97.6 0.0022 4.7E-08 72.5 17.3 51 191-241 568-625 (857)
157 TIGR00767 rho transcription te 97.6 0.00019 4.2E-09 71.9 7.9 91 213-305 167-266 (415)
158 COG1223 Predicted ATPase (AAA+ 97.6 0.00058 1.2E-08 63.4 10.1 173 191-387 121-318 (368)
159 COG0466 Lon ATP-dependent Lon 97.6 0.00041 9E-09 73.3 10.3 159 192-363 324-508 (782)
160 smart00382 AAA ATPases associa 97.5 0.0002 4.2E-09 61.8 6.6 34 215-248 3-36 (148)
161 COG0470 HolB ATPase involved i 97.5 0.0014 2.9E-08 65.9 13.4 145 193-356 3-174 (325)
162 TIGR02639 ClpA ATP-dependent C 97.5 0.0018 3.8E-08 72.3 15.4 49 191-239 454-509 (731)
163 PRK06526 transposase; Provisio 97.5 0.00019 4.2E-09 68.8 6.8 34 214-247 98-131 (254)
164 PRK09183 transposase/IS protei 97.5 0.00013 2.9E-09 70.3 5.5 34 215-248 103-136 (259)
165 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00093 2E-08 69.2 11.5 130 214-364 545-693 (802)
166 PRK06921 hypothetical protein; 97.5 0.00024 5.2E-09 68.7 6.9 36 214-249 117-153 (266)
167 cd01131 PilT Pilus retraction 97.4 0.00044 9.4E-09 64.0 7.5 108 215-333 2-109 (198)
168 TIGR01817 nifA Nif-specific re 97.4 0.0027 5.9E-08 68.3 14.5 52 188-239 193-244 (534)
169 TIGR02902 spore_lonB ATP-depen 97.4 0.0015 3.2E-08 69.8 12.0 49 188-238 62-110 (531)
170 PF10236 DAP3: Mitochondrial r 97.4 0.0036 7.9E-08 62.0 13.9 48 344-391 258-306 (309)
171 PRK04132 replication factor C 97.4 0.0054 1.2E-07 68.0 16.4 155 219-393 569-730 (846)
172 TIGR02974 phageshock_pspF psp 97.4 0.0028 6.1E-08 63.4 13.2 47 193-239 1-47 (329)
173 PRK13531 regulatory ATPase Rav 97.4 0.0012 2.6E-08 68.0 10.6 46 191-240 20-65 (498)
174 PRK08699 DNA polymerase III su 97.3 0.0019 4.1E-08 64.3 11.5 86 295-390 114-202 (325)
175 KOG2228 Origin recognition com 97.3 0.0023 4.9E-08 61.8 11.2 171 190-363 23-219 (408)
176 PRK11608 pspF phage shock prot 97.3 0.0071 1.5E-07 60.6 15.6 47 191-237 6-52 (326)
177 KOG0991 Replication factor C, 97.3 0.00083 1.8E-08 61.3 7.9 49 189-239 25-73 (333)
178 KOG2004 Mitochondrial ATP-depe 97.3 0.00078 1.7E-08 71.0 8.7 51 192-242 412-466 (906)
179 TIGR00763 lon ATP-dependent pr 97.3 0.0014 3.1E-08 73.5 11.6 159 192-363 321-505 (775)
180 PRK11034 clpA ATP-dependent Cl 97.3 0.0034 7.4E-08 69.4 14.1 49 191-239 458-513 (758)
181 PF07693 KAP_NTPase: KAP famil 97.3 0.011 2.4E-07 59.3 16.9 45 197-241 2-47 (325)
182 CHL00095 clpC Clp protease ATP 97.3 0.0039 8.4E-08 70.5 14.7 117 191-317 509-635 (821)
183 COG0542 clpA ATP-binding subun 97.3 0.0029 6.4E-08 68.8 12.9 118 191-318 491-618 (786)
184 PTZ00494 tuzin-like protein; P 97.3 0.019 4.2E-07 57.9 17.4 167 186-363 366-544 (664)
185 PRK12608 transcription termina 97.3 0.0011 2.3E-08 66.3 8.8 101 202-305 122-231 (380)
186 PRK05022 anaerobic nitric oxid 97.2 0.011 2.3E-07 63.3 16.6 61 189-249 185-245 (509)
187 PRK09361 radB DNA repair and r 97.2 0.0011 2.4E-08 62.8 7.9 48 202-249 11-58 (225)
188 PRK11331 5-methylcytosine-spec 97.2 0.00074 1.6E-08 69.0 6.9 103 191-305 175-283 (459)
189 COG1066 Sms Predicted ATP-depe 97.2 0.0025 5.4E-08 63.4 10.2 97 200-304 79-178 (456)
190 cd01120 RecA-like_NTPases RecA 97.2 0.0021 4.6E-08 57.0 9.3 33 217-249 2-34 (165)
191 cd01393 recA_like RecA is a b 97.2 0.0017 3.8E-08 61.4 9.0 48 202-249 7-60 (226)
192 KOG0730 AAA+-type ATPase [Post 97.2 0.0023 5E-08 67.1 10.3 176 189-388 431-637 (693)
193 COG1484 DnaC DNA replication p 97.2 0.0024 5.2E-08 61.3 9.8 37 213-249 104-140 (254)
194 PF03215 Rad17: Rad17 cell cyc 97.2 0.0029 6.4E-08 66.8 11.2 51 189-239 17-70 (519)
195 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.003 6.5E-08 55.5 9.3 35 215-249 3-37 (159)
196 cd01121 Sms Sms (bacterial rad 97.2 0.0027 5.9E-08 64.3 10.3 49 201-249 69-117 (372)
197 cd01394 radB RadB. The archaea 97.1 0.0015 3.2E-08 61.5 8.0 49 201-249 6-54 (218)
198 PRK15429 formate hydrogenlyase 97.1 0.015 3.2E-07 64.7 17.0 60 190-249 375-434 (686)
199 PRK10787 DNA-binding ATP-depen 97.1 0.0012 2.6E-08 73.5 8.2 159 192-363 323-506 (784)
200 PF07728 AAA_5: AAA domain (dy 97.1 0.00016 3.5E-09 62.7 1.2 22 217-238 2-23 (139)
201 PF00158 Sigma54_activat: Sigm 97.1 0.00086 1.9E-08 60.0 5.8 47 193-239 1-47 (168)
202 PRK06835 DNA replication prote 97.1 0.0024 5.2E-08 63.6 9.4 35 215-249 184-218 (329)
203 KOG0743 AAA+-type ATPase [Post 97.1 0.0077 1.7E-07 60.8 12.8 151 214-398 235-413 (457)
204 KOG0731 AAA+-type ATPase conta 97.1 0.015 3.2E-07 63.1 15.6 180 189-391 309-521 (774)
205 TIGR02237 recomb_radB DNA repa 97.1 0.0018 3.9E-08 60.5 8.0 38 212-249 10-47 (209)
206 PF02562 PhoH: PhoH-like prote 97.1 0.0022 4.8E-08 58.9 8.2 127 196-332 5-155 (205)
207 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0019 4.1E-08 61.6 8.0 47 203-249 8-60 (235)
208 PF14532 Sigma54_activ_2: Sigm 97.1 0.00042 9.1E-09 60.1 3.1 46 194-239 1-46 (138)
209 PHA00729 NTP-binding motif con 97.1 0.0015 3.2E-08 60.8 6.8 27 213-239 16-42 (226)
210 KOG1514 Origin recognition com 97.0 0.024 5.3E-07 60.1 16.2 198 189-395 394-622 (767)
211 PF13207 AAA_17: AAA domain; P 97.0 0.00053 1.1E-08 57.8 3.4 23 216-238 1-23 (121)
212 PRK04296 thymidine kinase; Pro 97.0 0.00097 2.1E-08 61.2 5.4 110 215-333 3-116 (190)
213 KOG1970 Checkpoint RAD17-RFC c 97.0 0.0099 2.2E-07 61.2 12.8 44 196-239 87-135 (634)
214 TIGR01420 pilT_fam pilus retra 97.0 0.0018 3.9E-08 65.3 7.6 107 214-331 122-228 (343)
215 PRK06696 uridine kinase; Valid 97.0 0.0012 2.6E-08 62.4 5.8 47 195-241 2-49 (223)
216 smart00763 AAA_PrkA PrkA AAA d 97.0 0.0006 1.3E-08 67.7 3.8 49 192-240 52-104 (361)
217 COG0464 SpoVK ATPases of the A 97.0 0.0042 9.1E-08 66.3 10.6 152 213-386 275-445 (494)
218 PF04665 Pox_A32: Poxvirus A32 97.0 0.00073 1.6E-08 63.5 4.1 35 215-249 14-48 (241)
219 PRK06067 flagellar accessory p 97.0 0.0022 4.8E-08 61.1 7.5 48 202-249 13-60 (234)
220 PRK10733 hflB ATP-dependent me 97.0 0.0066 1.4E-07 66.5 12.1 128 215-364 186-336 (644)
221 KOG1969 DNA replication checkp 96.9 0.0022 4.7E-08 68.0 7.5 28 211-238 323-350 (877)
222 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0035 7.6E-08 60.2 8.3 39 213-251 68-106 (274)
223 cd00544 CobU Adenosylcobinamid 96.9 0.0017 3.6E-08 58.2 5.7 79 217-303 2-82 (169)
224 PRK04328 hypothetical protein; 96.9 0.0058 1.3E-07 58.7 9.9 48 202-249 11-58 (249)
225 cd00983 recA RecA is a bacter 96.9 0.0021 4.6E-08 63.4 6.9 48 202-249 42-90 (325)
226 PRK08939 primosomal protein Dn 96.9 0.0055 1.2E-07 60.5 9.8 55 195-249 135-191 (306)
227 TIGR02012 tigrfam_recA protein 96.9 0.0024 5.2E-08 63.0 7.2 48 202-249 42-90 (321)
228 COG1618 Predicted nucleotide k 96.9 0.001 2.2E-08 57.4 3.9 38 215-252 6-45 (179)
229 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0045 9.7E-08 59.9 9.0 104 198-316 67-170 (264)
230 PRK09354 recA recombinase A; P 96.9 0.0023 4.9E-08 63.7 7.0 48 202-249 47-95 (349)
231 KOG0735 AAA+-type ATPase [Post 96.9 0.0096 2.1E-07 63.0 11.7 153 214-390 701-872 (952)
232 PRK11823 DNA repair protein Ra 96.9 0.0058 1.3E-07 63.8 10.4 50 200-249 66-115 (446)
233 PRK07667 uridine kinase; Provi 96.9 0.002 4.3E-08 59.3 6.1 41 201-241 4-44 (193)
234 PRK08118 topology modulation p 96.9 0.0031 6.7E-08 56.5 6.9 24 216-239 3-26 (167)
235 PF01583 APS_kinase: Adenylyls 96.8 0.0018 3.8E-08 56.7 5.0 36 214-249 2-37 (156)
236 KOG0727 26S proteasome regulat 96.8 0.011 2.4E-07 54.7 10.0 131 212-363 187-339 (408)
237 PRK14974 cell division protein 96.8 0.028 6E-07 56.1 13.7 29 213-241 139-167 (336)
238 PRK07261 topology modulation p 96.8 0.0058 1.3E-07 55.0 8.2 23 216-238 2-24 (171)
239 TIGR00416 sms DNA repair prote 96.8 0.0079 1.7E-07 62.9 10.2 50 200-249 80-129 (454)
240 COG5635 Predicted NTPase (NACH 96.8 0.012 2.5E-07 66.7 12.2 139 215-359 223-374 (824)
241 PF13604 AAA_30: AAA domain; P 96.8 0.0065 1.4E-07 56.0 8.4 115 200-333 7-131 (196)
242 COG4088 Predicted nucleotide k 96.8 0.0031 6.7E-08 56.7 5.9 28 215-242 2-29 (261)
243 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.007 1.5E-07 55.1 8.3 23 216-238 1-23 (183)
244 cd01124 KaiC KaiC is a circadi 96.7 0.0054 1.2E-07 56.0 7.2 33 217-249 2-34 (187)
245 KOG2035 Replication factor C, 96.7 0.029 6.4E-07 52.9 11.7 185 190-389 12-223 (351)
246 PRK11388 DNA-binding transcrip 96.6 0.039 8.4E-07 60.9 15.0 49 190-238 324-372 (638)
247 PF00448 SRP54: SRP54-type pro 96.6 0.0093 2E-07 54.9 8.5 57 214-273 1-57 (196)
248 PF10137 TIR-like: Predicted n 96.6 0.0062 1.3E-07 51.1 6.6 77 19-98 1-90 (125)
249 PRK10820 DNA-binding transcrip 96.6 0.052 1.1E-06 58.1 15.4 50 188-237 201-250 (520)
250 PF08433 KTI12: Chromatin asso 96.6 0.005 1.1E-07 59.6 6.8 35 215-249 2-36 (270)
251 KOG0734 AAA+-type ATPase conta 96.6 0.0039 8.4E-08 63.7 6.2 151 192-363 305-484 (752)
252 KOG0652 26S proteasome regulat 96.6 0.046 1E-06 51.0 12.6 48 192-239 172-230 (424)
253 KOG0651 26S proteasome regulat 96.6 0.0073 1.6E-07 57.8 7.5 30 213-242 165-194 (388)
254 PRK10923 glnG nitrogen regulat 96.6 0.065 1.4E-06 56.8 15.6 48 191-238 138-185 (469)
255 PF08423 Rad51: Rad51; InterP 96.5 0.0042 9.2E-08 59.8 5.8 37 202-238 26-62 (256)
256 TIGR02655 circ_KaiC circadian 96.5 0.0046 1E-07 65.5 6.6 50 200-249 249-298 (484)
257 KOG0736 Peroxisome assembly fa 96.5 0.029 6.2E-07 60.2 12.0 123 214-357 705-850 (953)
258 PRK00771 signal recognition pa 96.5 0.033 7.1E-07 57.7 12.4 29 213-241 94-122 (437)
259 PRK07132 DNA polymerase III su 96.5 0.65 1.4E-05 45.7 20.9 167 200-393 5-184 (299)
260 PRK10867 signal recognition pa 96.5 0.03 6.6E-07 57.8 12.0 29 213-241 99-127 (433)
261 PF03308 ArgK: ArgK protein; 96.5 0.0063 1.4E-07 57.3 6.3 41 202-242 17-57 (266)
262 TIGR00708 cobA cob(I)alamin ad 96.5 0.016 3.5E-07 51.6 8.5 34 215-248 6-39 (173)
263 PRK11889 flhF flagellar biosyn 96.5 0.027 5.9E-07 56.7 11.0 37 213-249 240-276 (436)
264 PRK00279 adk adenylate kinase; 96.5 0.0074 1.6E-07 56.6 6.8 23 216-238 2-24 (215)
265 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.0068 1.5E-07 61.2 6.8 105 214-330 134-243 (358)
266 PF13238 AAA_18: AAA domain; P 96.4 0.0024 5.3E-08 54.2 3.2 22 217-238 1-22 (129)
267 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0053 1.1E-07 59.1 5.8 26 216-241 1-26 (249)
268 TIGR02525 plasmid_TraJ plasmid 96.4 0.0054 1.2E-07 62.0 6.0 95 215-316 150-246 (372)
269 PRK05541 adenylylsulfate kinas 96.4 0.0039 8.5E-08 56.5 4.6 37 213-249 6-42 (176)
270 CHL00206 ycf2 Ycf2; Provisiona 96.4 0.039 8.4E-07 65.3 13.2 26 213-238 1629-1654(2281)
271 PRK14527 adenylate kinase; Pro 96.4 0.0059 1.3E-07 56.1 5.6 26 213-238 5-30 (191)
272 PRK10463 hydrogenase nickel in 96.4 0.0034 7.3E-08 60.7 4.0 36 212-247 102-137 (290)
273 PLN03187 meiotic recombination 96.4 0.012 2.6E-07 58.8 8.0 48 202-249 114-167 (344)
274 TIGR00064 ftsY signal recognit 96.4 0.013 2.7E-07 57.0 8.0 37 213-249 71-107 (272)
275 PF07726 AAA_3: ATPase family 96.3 0.0027 5.9E-08 53.1 2.7 29 217-245 2-30 (131)
276 PRK15455 PrkA family serine pr 96.3 0.0041 8.8E-08 65.2 4.5 51 191-241 76-130 (644)
277 KOG0729 26S proteasome regulat 96.3 0.025 5.4E-07 52.9 9.1 35 212-251 209-243 (435)
278 PF00406 ADK: Adenylate kinase 96.3 0.0063 1.4E-07 53.6 5.0 89 219-315 1-94 (151)
279 KOG0728 26S proteasome regulat 96.3 0.068 1.5E-06 49.6 11.6 130 213-363 180-331 (404)
280 PRK14528 adenylate kinase; Pro 96.3 0.011 2.4E-07 54.0 6.7 24 215-238 2-25 (186)
281 PF00485 PRK: Phosphoribulokin 96.3 0.0037 8E-08 57.6 3.7 26 216-241 1-26 (194)
282 PF00910 RNA_helicase: RNA hel 96.3 0.0023 5.1E-08 52.6 2.1 25 217-241 1-25 (107)
283 KOG0739 AAA+-type ATPase [Post 96.3 0.049 1.1E-06 51.9 10.9 173 191-388 133-335 (439)
284 cd01125 repA Hexameric Replica 96.3 0.037 8E-07 52.9 10.5 24 216-239 3-26 (239)
285 PF13671 AAA_33: AAA domain; P 96.2 0.0038 8.3E-08 54.2 3.4 24 216-239 1-24 (143)
286 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0056 1.2E-07 52.1 4.2 42 198-239 6-47 (133)
287 TIGR01351 adk adenylate kinase 96.2 0.014 3E-07 54.5 7.3 22 217-238 2-23 (210)
288 COG0563 Adk Adenylate kinase a 96.2 0.005 1.1E-07 55.6 4.1 23 216-238 2-24 (178)
289 cd02019 NK Nucleoside/nucleoti 96.2 0.0038 8.2E-08 46.7 2.7 23 216-238 1-23 (69)
290 PRK04301 radA DNA repair and r 96.2 0.017 3.7E-07 57.7 8.1 48 202-249 90-143 (317)
291 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.0086 1.9E-07 57.1 5.8 48 202-249 9-56 (237)
292 TIGR02238 recomb_DMC1 meiotic 96.2 0.017 3.8E-07 57.2 8.0 49 201-249 83-137 (313)
293 cd03238 ABC_UvrA The excision 96.2 0.015 3.3E-07 52.4 6.9 22 214-235 21-42 (176)
294 PRK14531 adenylate kinase; Pro 96.2 0.013 2.7E-07 53.5 6.4 24 215-238 3-26 (183)
295 PRK06762 hypothetical protein; 96.1 0.0045 9.7E-08 55.5 3.4 25 214-238 2-26 (166)
296 cd03228 ABCC_MRP_Like The MRP 96.1 0.024 5.2E-07 51.0 8.1 34 214-248 28-61 (171)
297 PRK08233 hypothetical protein; 96.1 0.0044 9.5E-08 56.4 3.3 26 214-239 3-28 (182)
298 COG4608 AppF ABC-type oligopep 96.1 0.017 3.6E-07 54.8 7.1 124 213-339 38-176 (268)
299 COG0467 RAD55 RecA-superfamily 96.1 0.0084 1.8E-07 58.1 5.4 38 212-249 21-58 (260)
300 COG2805 PilT Tfp pilus assembl 96.1 0.022 4.7E-07 54.5 7.8 105 213-330 124-229 (353)
301 COG0529 CysC Adenylylsulfate k 96.1 0.0082 1.8E-07 52.7 4.6 37 212-248 21-57 (197)
302 PRK05917 DNA polymerase III su 96.1 0.15 3.2E-06 49.6 13.7 127 201-350 7-154 (290)
303 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.0086 1.9E-07 57.9 5.3 37 213-249 35-71 (259)
304 TIGR02858 spore_III_AA stage I 96.1 0.066 1.4E-06 51.8 11.2 111 214-335 111-231 (270)
305 COG1703 ArgK Putative periplas 96.1 0.01 2.2E-07 56.8 5.3 47 201-247 38-84 (323)
306 PTZ00088 adenylate kinase 1; P 96.0 0.019 4.2E-07 54.1 7.2 23 216-238 8-30 (229)
307 PRK05342 clpX ATP-dependent pr 96.0 0.015 3.4E-07 59.7 7.0 48 192-239 72-133 (412)
308 PTZ00301 uridine kinase; Provi 96.0 0.0056 1.2E-07 56.9 3.5 28 214-241 3-30 (210)
309 PRK14722 flhF flagellar biosyn 96.0 0.031 6.8E-07 56.4 9.0 28 214-241 137-164 (374)
310 cd01428 ADK Adenylate kinase ( 96.0 0.035 7.6E-07 51.0 8.8 22 217-238 2-23 (194)
311 PRK14532 adenylate kinase; Pro 96.0 0.019 4.2E-07 52.5 6.8 22 217-238 3-24 (188)
312 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.033 7.1E-07 48.5 7.9 103 214-337 26-131 (144)
313 TIGR03499 FlhF flagellar biosy 96.0 0.03 6.5E-07 54.8 8.5 29 213-241 193-221 (282)
314 PRK05480 uridine/cytidine kina 96.0 0.0066 1.4E-07 56.7 3.7 27 212-238 4-30 (209)
315 TIGR02329 propionate_PrpR prop 96.0 0.13 2.8E-06 54.8 13.8 49 190-238 211-259 (526)
316 cd01122 GP4d_helicase GP4d_hel 96.0 0.051 1.1E-06 53.0 10.1 36 214-249 30-66 (271)
317 COG3910 Predicted ATPase [Gene 96.0 0.13 2.9E-06 45.8 11.3 24 214-237 37-60 (233)
318 cd03247 ABCC_cytochrome_bd The 95.9 0.059 1.3E-06 48.8 9.8 124 214-347 28-169 (178)
319 PRK09519 recA DNA recombinatio 95.9 0.018 4E-07 63.2 7.4 95 201-304 46-148 (790)
320 PRK00889 adenylylsulfate kinas 95.9 0.011 2.3E-07 53.5 4.8 36 213-248 3-38 (175)
321 cd03214 ABC_Iron-Siderophores_ 95.9 0.029 6.2E-07 51.0 7.6 121 214-336 25-161 (180)
322 PLN02674 adenylate kinase 95.9 0.029 6.2E-07 53.2 7.7 25 214-238 31-55 (244)
323 PRK04040 adenylate kinase; Pro 95.9 0.0082 1.8E-07 54.9 3.9 25 215-239 3-27 (188)
324 COG0468 RecA RecA/RadA recombi 95.9 0.028 6E-07 54.3 7.6 45 205-249 51-95 (279)
325 cd02027 APSK Adenosine 5'-phos 95.9 0.077 1.7E-06 46.5 9.9 25 216-240 1-25 (149)
326 PTZ00035 Rad51 protein; Provis 95.9 0.043 9.2E-07 55.1 9.3 38 201-238 105-142 (337)
327 PF13245 AAA_19: Part of AAA d 95.9 0.01 2.2E-07 45.2 3.7 25 214-238 10-34 (76)
328 PRK12723 flagellar biosynthesi 95.9 0.07 1.5E-06 54.4 10.8 27 213-239 173-199 (388)
329 PRK15115 response regulator Gl 95.9 0.26 5.6E-06 51.9 15.6 49 191-239 134-182 (444)
330 cd03216 ABC_Carb_Monos_I This 95.9 0.021 4.5E-07 51.0 6.3 117 214-337 26-146 (163)
331 COG0465 HflB ATP-dependent Zn 95.9 0.1 2.2E-06 55.5 12.2 178 189-390 148-357 (596)
332 PLN03186 DNA repair protein RA 95.8 0.038 8.3E-07 55.3 8.7 37 201-237 110-146 (342)
333 PF06068 TIP49: TIP49 C-termin 95.8 0.012 2.7E-07 58.1 5.1 58 189-246 22-82 (398)
334 PF03969 AFG1_ATPase: AFG1-lik 95.8 0.02 4.3E-07 57.8 6.6 102 213-331 61-166 (362)
335 PF03266 NTPase_1: NTPase; In 95.8 0.0069 1.5E-07 54.2 2.9 24 217-240 2-25 (168)
336 cd03223 ABCD_peroxisomal_ALDP 95.8 0.082 1.8E-06 47.3 9.9 126 214-347 27-160 (166)
337 PRK05973 replicative DNA helic 95.8 0.015 3.3E-07 54.9 5.2 37 213-249 63-99 (237)
338 KOG0726 26S proteasome regulat 95.8 0.077 1.7E-06 50.4 9.7 30 213-242 218-247 (440)
339 cd00227 CPT Chloramphenicol (C 95.8 0.0083 1.8E-07 54.3 3.4 25 215-239 3-27 (175)
340 TIGR00235 udk uridine kinase. 95.8 0.0097 2.1E-07 55.5 3.9 28 212-239 4-31 (207)
341 COG3854 SpoIIIAA ncharacterize 95.8 0.03 6.5E-07 51.4 6.7 26 216-241 139-164 (308)
342 PF07724 AAA_2: AAA domain (Cd 95.8 0.011 2.5E-07 53.0 4.2 35 215-249 4-39 (171)
343 PRK00131 aroK shikimate kinase 95.8 0.008 1.7E-07 54.1 3.2 26 214-239 4-29 (175)
344 PRK06217 hypothetical protein; 95.8 0.039 8.4E-07 50.3 7.8 24 216-239 3-26 (183)
345 PRK03839 putative kinase; Prov 95.7 0.0078 1.7E-07 54.7 3.2 24 216-239 2-25 (180)
346 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.019 4.1E-07 54.5 5.8 48 202-249 8-55 (229)
347 PRK05986 cob(I)alamin adenolsy 95.7 0.031 6.6E-07 50.6 6.8 118 214-333 22-158 (191)
348 COG1102 Cmk Cytidylate kinase 95.7 0.0077 1.7E-07 52.1 2.8 24 216-239 2-25 (179)
349 PF06745 KaiC: KaiC; InterPro 95.7 0.0073 1.6E-07 57.2 3.0 47 203-249 8-55 (226)
350 TIGR02533 type_II_gspE general 95.7 0.035 7.7E-07 58.5 8.3 114 198-330 229-342 (486)
351 KOG3928 Mitochondrial ribosome 95.7 0.24 5.2E-06 49.6 13.3 58 341-398 402-460 (461)
352 PRK12726 flagellar biosynthesi 95.7 0.078 1.7E-06 53.3 10.1 37 213-249 205-241 (407)
353 COG0572 Udk Uridine kinase [Nu 95.7 0.013 2.8E-07 53.9 4.4 30 212-241 6-35 (218)
354 PRK02496 adk adenylate kinase; 95.7 0.028 6.1E-07 51.2 6.7 23 216-238 3-25 (184)
355 PRK06547 hypothetical protein; 95.7 0.0097 2.1E-07 53.5 3.6 27 212-238 13-39 (172)
356 COG2401 ABC-type ATPase fused 95.7 0.057 1.2E-06 54.0 8.8 63 285-347 516-582 (593)
357 cd02028 UMPK_like Uridine mono 95.7 0.012 2.7E-07 53.3 4.1 26 216-241 1-26 (179)
358 cd01858 NGP_1 NGP-1. Autoanti 95.7 0.08 1.7E-06 46.8 9.3 42 195-236 82-124 (157)
359 TIGR02915 PEP_resp_reg putativ 95.6 0.2 4.4E-06 52.7 13.8 48 191-238 139-186 (445)
360 PF00437 T2SE: Type II/IV secr 95.6 0.0073 1.6E-07 58.9 2.6 111 191-312 104-214 (270)
361 TIGR01360 aden_kin_iso1 adenyl 95.6 0.0096 2.1E-07 54.4 3.3 25 214-238 3-27 (188)
362 TIGR01650 PD_CobS cobaltochela 95.6 0.017 3.7E-07 56.9 5.1 51 187-241 41-91 (327)
363 COG1643 HrpA HrpA-like helicas 95.6 0.083 1.8E-06 58.8 10.9 127 198-332 53-204 (845)
364 COG0378 HypB Ni2+-binding GTPa 95.6 0.012 2.7E-07 52.7 3.7 36 214-249 13-48 (202)
365 PRK07276 DNA polymerase III su 95.6 0.53 1.1E-05 46.0 15.3 68 293-361 103-173 (290)
366 PF02456 Adeno_IVa2: Adenoviru 95.6 0.1 2.3E-06 50.1 10.0 36 214-249 87-124 (369)
367 TIGR00382 clpX endopeptidase C 95.6 0.033 7.1E-07 57.1 7.2 25 215-239 117-141 (413)
368 PF00154 RecA: recA bacterial 95.6 0.023 5E-07 56.0 5.9 48 202-249 40-88 (322)
369 COG1875 NYN ribonuclease and A 95.6 0.17 3.8E-06 49.8 11.6 44 191-236 224-267 (436)
370 PF13086 AAA_11: AAA domain; P 95.6 0.027 5.9E-07 53.2 6.3 37 198-238 5-41 (236)
371 KOG1051 Chaperone HSP104 and r 95.6 0.12 2.5E-06 57.6 11.7 102 192-305 563-671 (898)
372 PRK13765 ATP-dependent proteas 95.6 0.02 4.3E-07 62.1 5.8 76 186-270 26-102 (637)
373 COG1224 TIP49 DNA helicase TIP 95.6 0.023 5E-07 55.5 5.6 58 187-244 35-95 (450)
374 PRK03846 adenylylsulfate kinas 95.6 0.019 4.1E-07 53.1 5.0 38 212-249 22-59 (198)
375 PRK12727 flagellar biosynthesi 95.6 0.069 1.5E-06 56.0 9.5 49 193-241 325-377 (559)
376 COG2804 PulE Type II secretory 95.5 0.037 8E-07 57.1 7.4 115 198-331 245-359 (500)
377 PRK00625 shikimate kinase; Pro 95.5 0.01 2.2E-07 53.4 3.1 24 216-239 2-25 (173)
378 PRK14526 adenylate kinase; Pro 95.5 0.045 9.8E-07 51.0 7.4 22 217-238 3-24 (211)
379 PRK09435 membrane ATPase/prote 95.5 0.027 6E-07 56.0 6.2 31 211-241 53-83 (332)
380 PRK14529 adenylate kinase; Pro 95.5 0.038 8.3E-07 51.7 6.8 92 217-314 3-96 (223)
381 cd03246 ABCC_Protease_Secretio 95.5 0.036 7.7E-07 50.0 6.4 34 214-248 28-61 (173)
382 TIGR01425 SRP54_euk signal rec 95.5 0.05 1.1E-06 55.9 8.0 36 213-248 99-134 (429)
383 TIGR03600 phage_DnaB phage rep 95.5 0.25 5.4E-06 51.6 13.5 66 200-272 181-247 (421)
384 PRK15453 phosphoribulokinase; 95.5 0.02 4.4E-07 54.9 4.9 37 212-248 3-39 (290)
385 TIGR00959 ffh signal recogniti 95.4 0.046 9.9E-07 56.4 7.7 27 213-239 98-124 (428)
386 TIGR01818 ntrC nitrogen regula 95.4 0.28 6E-06 51.9 14.0 49 191-239 134-182 (463)
387 cd03222 ABC_RNaseL_inhibitor T 95.4 0.041 8.8E-07 49.7 6.5 114 214-348 25-146 (177)
388 PRK09270 nucleoside triphospha 95.4 0.02 4.4E-07 54.2 4.7 32 211-242 30-61 (229)
389 cd02021 GntK Gluconate kinase 95.4 0.01 2.3E-07 52.0 2.6 23 216-238 1-23 (150)
390 TIGR03575 selen_PSTK_euk L-ser 95.4 0.091 2E-06 52.4 9.4 23 217-239 2-24 (340)
391 PF13481 AAA_25: AAA domain; P 95.4 0.088 1.9E-06 48.3 8.9 26 215-240 33-58 (193)
392 PHA02244 ATPase-like protein 95.4 0.014 3E-07 58.3 3.5 46 190-239 95-144 (383)
393 PF00625 Guanylate_kin: Guanyl 95.3 0.017 3.7E-07 52.6 3.9 35 214-248 2-36 (183)
394 TIGR01526 nadR_NMN_Atrans nico 95.3 0.22 4.7E-06 49.8 12.0 25 215-239 163-187 (325)
395 PRK05800 cobU adenosylcobinami 95.3 0.083 1.8E-06 47.4 8.1 23 216-238 3-25 (170)
396 PRK05439 pantothenate kinase; 95.3 0.021 4.6E-07 56.1 4.6 30 211-240 83-112 (311)
397 PRK14738 gmk guanylate kinase; 95.3 0.015 3.3E-07 54.0 3.5 28 210-237 9-36 (206)
398 KOG0742 AAA+-type ATPase [Post 95.3 0.13 2.7E-06 51.4 9.7 128 213-363 383-528 (630)
399 PRK05537 bifunctional sulfate 95.3 0.023 5E-07 61.1 5.2 50 191-240 369-418 (568)
400 TIGR03880 KaiC_arch_3 KaiC dom 95.3 0.031 6.6E-07 52.8 5.6 48 202-249 4-51 (224)
401 TIGR02239 recomb_RAD51 DNA rep 95.3 0.066 1.4E-06 53.2 8.1 37 201-237 83-119 (316)
402 cd03230 ABC_DR_subfamily_A Thi 95.3 0.09 1.9E-06 47.4 8.4 34 214-248 26-59 (173)
403 TIGR00390 hslU ATP-dependent p 95.3 0.044 9.5E-07 55.7 6.8 50 192-241 13-74 (441)
404 PRK10436 hypothetical protein; 95.3 0.064 1.4E-06 56.0 8.3 113 199-330 206-318 (462)
405 PRK13947 shikimate kinase; Pro 95.3 0.014 3E-07 52.5 3.0 24 216-239 3-26 (171)
406 PRK11361 acetoacetate metaboli 95.3 0.36 7.9E-06 50.9 14.2 49 191-239 143-191 (457)
407 TIGR02322 phosphon_PhnN phosph 95.3 0.015 3.2E-07 52.8 3.1 25 215-239 2-26 (179)
408 COG0488 Uup ATPase components 95.2 0.1 2.2E-06 55.5 9.7 133 214-349 348-511 (530)
409 PRK08533 flagellar accessory p 95.2 0.021 4.5E-07 54.1 4.2 37 213-249 23-59 (230)
410 COG1936 Predicted nucleotide k 95.2 0.014 3.1E-07 51.2 2.7 20 216-235 2-21 (180)
411 PF06414 Zeta_toxin: Zeta toxi 95.2 0.027 5.9E-07 52.1 4.8 97 212-315 13-113 (199)
412 cd02024 NRK1 Nicotinamide ribo 95.2 0.013 2.8E-07 53.3 2.6 23 216-238 1-23 (187)
413 COG2274 SunT ABC-type bacterio 95.2 0.082 1.8E-06 58.2 9.1 25 213-237 498-522 (709)
414 COG2884 FtsE Predicted ATPase 95.2 0.17 3.8E-06 45.3 9.3 53 285-340 146-204 (223)
415 cd00071 GMPK Guanosine monopho 95.2 0.014 3E-07 50.4 2.6 24 217-240 2-25 (137)
416 cd02020 CMPK Cytidine monophos 95.2 0.014 3.1E-07 50.8 2.7 24 216-239 1-24 (147)
417 cd02025 PanK Pantothenate kina 95.1 0.022 4.8E-07 53.5 4.0 25 216-240 1-25 (220)
418 PRK12597 F0F1 ATP synthase sub 95.1 0.073 1.6E-06 55.2 8.1 34 213-246 142-175 (461)
419 PF02374 ArsA_ATPase: Anion-tr 95.1 0.028 6E-07 55.6 4.8 35 215-249 2-36 (305)
420 KOG3347 Predicted nucleotide k 95.1 0.017 3.6E-07 49.2 2.7 24 215-238 8-31 (176)
421 PF03205 MobB: Molybdopterin g 95.1 0.029 6.3E-07 48.5 4.4 35 215-249 1-36 (140)
422 PRK12724 flagellar biosynthesi 95.1 0.089 1.9E-06 53.7 8.4 25 214-238 223-247 (432)
423 TIGR00750 lao LAO/AO transport 95.1 0.044 9.6E-07 54.2 6.2 31 211-241 31-61 (300)
424 PRK13808 adenylate kinase; Pro 95.1 0.047 1E-06 54.1 6.3 22 217-238 3-24 (333)
425 TIGR02788 VirB11 P-type DNA tr 95.1 0.045 9.7E-07 54.4 6.2 90 214-311 144-234 (308)
426 PRK09302 circadian clock prote 95.1 0.067 1.5E-06 57.3 8.0 97 200-303 259-372 (509)
427 COG0714 MoxR-like ATPases [Gen 95.1 0.024 5.2E-07 57.0 4.3 47 192-242 25-71 (329)
428 cd02023 UMPK Uridine monophosp 95.1 0.015 3.3E-07 53.7 2.7 23 216-238 1-23 (198)
429 PRK12339 2-phosphoglycerate ki 95.1 0.02 4.4E-07 52.7 3.4 25 214-238 3-27 (197)
430 PF02367 UPF0079: Uncharacteri 95.0 0.027 5.8E-07 47.2 3.8 27 213-239 14-40 (123)
431 TIGR02782 TrbB_P P-type conjug 95.0 0.071 1.5E-06 52.6 7.4 87 215-312 133-221 (299)
432 PRK09280 F0F1 ATP synthase sub 95.0 0.09 1.9E-06 54.4 8.4 91 213-305 143-249 (463)
433 PF09848 DUF2075: Uncharacteri 95.0 0.087 1.9E-06 53.5 8.2 35 215-249 2-38 (352)
434 COG2204 AtoC Response regulato 95.0 0.92 2E-05 47.1 15.5 50 189-238 139-188 (464)
435 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.11 2.3E-06 48.7 8.1 23 214-236 29-51 (213)
436 COG0194 Gmk Guanylate kinase [ 95.0 0.026 5.6E-07 50.3 3.7 25 214-238 4-28 (191)
437 cd00984 DnaB_C DnaB helicase C 95.0 0.065 1.4E-06 51.2 6.9 37 213-249 12-49 (242)
438 PRK14737 gmk guanylate kinase; 95.0 0.02 4.4E-07 52.2 3.1 26 213-238 3-28 (186)
439 COG4618 ArpD ABC-type protease 95.0 0.033 7.1E-07 57.1 4.8 23 214-236 362-384 (580)
440 PLN02459 probable adenylate ki 95.0 0.079 1.7E-06 50.6 7.2 91 216-315 31-129 (261)
441 PRK10416 signal recognition pa 95.0 0.047 1E-06 54.3 5.9 36 213-248 113-148 (318)
442 TIGR02538 type_IV_pilB type IV 94.9 0.09 2E-06 56.8 8.5 114 198-330 303-416 (564)
443 TIGR02236 recomb_radA DNA repa 94.9 0.077 1.7E-06 52.8 7.5 48 202-249 83-136 (310)
444 TIGR01313 therm_gnt_kin carboh 94.9 0.016 3.5E-07 51.6 2.4 22 217-238 1-22 (163)
445 KOG0740 AAA+-type ATPase [Post 94.9 0.25 5.4E-06 50.4 10.9 28 213-240 185-212 (428)
446 PRK05818 DNA polymerase III su 94.9 3.4 7.3E-05 39.5 17.9 115 213-350 6-147 (261)
447 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.028 6.2E-07 55.5 4.2 52 190-241 60-115 (358)
448 KOG0736 Peroxisome assembly fa 94.9 0.67 1.5E-05 50.2 14.4 150 193-363 403-576 (953)
449 PRK10751 molybdopterin-guanine 94.9 0.044 9.6E-07 49.0 5.0 29 213-241 5-33 (173)
450 COG0003 ArsA Predicted ATPase 94.9 0.043 9.4E-07 54.2 5.5 36 214-249 2-37 (322)
451 KOG0927 Predicted transporter 94.9 1.4 3.1E-05 45.9 16.2 255 62-339 257-572 (614)
452 COG0396 sufC Cysteine desulfur 94.9 0.07 1.5E-06 49.2 6.3 23 214-236 30-52 (251)
453 PRK05201 hslU ATP-dependent pr 94.9 0.032 7E-07 56.7 4.6 51 191-241 15-77 (443)
454 PRK10875 recD exonuclease V su 94.9 0.18 3.9E-06 54.7 10.5 27 214-240 167-193 (615)
455 COG1428 Deoxynucleoside kinase 94.9 0.022 4.8E-07 51.8 3.0 26 214-239 4-29 (216)
456 TIGR00041 DTMP_kinase thymidyl 94.9 0.061 1.3E-06 49.5 6.2 27 215-241 4-30 (195)
457 PRK13768 GTPase; Provisional 94.9 0.036 7.8E-07 53.3 4.7 34 215-248 3-36 (253)
458 cd00464 SK Shikimate kinase (S 94.9 0.022 4.7E-07 50.1 3.0 22 217-238 2-23 (154)
459 PRK05703 flhF flagellar biosyn 94.9 0.1 2.3E-06 54.0 8.4 36 214-249 221-258 (424)
460 TIGR00764 lon_rel lon-related 94.8 0.053 1.1E-06 58.9 6.3 56 190-249 17-73 (608)
461 TIGR02655 circ_KaiC circadian 94.8 0.043 9.2E-07 58.2 5.5 47 203-249 10-57 (484)
462 COG0488 Uup ATPase components 94.8 0.098 2.1E-06 55.6 8.1 62 284-348 161-224 (530)
463 cd03115 SRP The signal recogni 94.8 0.04 8.7E-07 49.6 4.6 34 216-249 2-35 (173)
464 PF12775 AAA_7: P-loop contain 94.8 0.02 4.4E-07 55.6 2.7 27 214-240 33-59 (272)
465 PF13521 AAA_28: AAA domain; P 94.8 0.024 5.2E-07 50.6 3.0 21 217-237 2-22 (163)
466 COG1120 FepC ABC-type cobalami 94.7 0.22 4.8E-06 47.4 9.6 25 213-237 27-51 (258)
467 TIGR01039 atpD ATP synthase, F 94.7 0.13 2.8E-06 53.1 8.5 91 213-305 142-248 (461)
468 PRK13949 shikimate kinase; Pro 94.7 0.026 5.5E-07 50.7 3.1 24 216-239 3-26 (169)
469 PRK14530 adenylate kinase; Pro 94.7 0.024 5.2E-07 53.2 3.1 24 215-238 4-27 (215)
470 PF03029 ATP_bind_1: Conserved 94.7 0.032 7E-07 53.0 3.9 33 219-252 1-33 (238)
471 TIGR02768 TraA_Ti Ti-type conj 94.7 0.17 3.7E-06 56.5 10.0 27 215-241 369-395 (744)
472 PF03193 DUF258: Protein of un 94.7 0.038 8.3E-07 48.6 4.0 35 198-237 24-58 (161)
473 COG2019 AdkA Archaeal adenylat 94.7 0.034 7.3E-07 48.5 3.5 25 214-238 4-28 (189)
474 PRK00300 gmk guanylate kinase; 94.7 0.026 5.5E-07 52.5 3.1 25 214-238 5-29 (205)
475 TIGR03263 guanyl_kin guanylate 94.7 0.022 4.8E-07 51.6 2.6 24 215-238 2-25 (180)
476 KOG0738 AAA+-type ATPase [Post 94.6 0.2 4.3E-06 49.8 9.1 51 190-240 211-271 (491)
477 PRK13948 shikimate kinase; Pro 94.6 0.028 6.1E-07 50.9 3.2 27 213-239 9-35 (182)
478 COG4619 ABC-type uncharacteriz 94.6 0.038 8.2E-07 48.3 3.7 27 215-241 30-56 (223)
479 COG1419 FlhF Flagellar GTP-bin 94.6 0.17 3.6E-06 51.1 8.7 36 214-249 203-240 (407)
480 PLN02200 adenylate kinase fami 94.6 0.03 6.5E-07 53.1 3.5 25 214-238 43-67 (234)
481 PRK10646 ADP-binding protein; 94.6 0.045 9.8E-07 47.7 4.2 43 197-239 11-53 (153)
482 KOG1532 GTPase XAB1, interacts 94.6 0.04 8.7E-07 51.8 4.1 36 213-248 18-53 (366)
483 PRK13946 shikimate kinase; Pro 94.6 0.027 5.9E-07 51.3 3.1 26 214-239 10-35 (184)
484 PRK13975 thymidylate kinase; P 94.6 0.03 6.5E-07 51.6 3.4 26 215-240 3-28 (196)
485 KOG0924 mRNA splicing factor A 94.6 0.12 2.6E-06 54.7 7.8 24 214-237 371-394 (1042)
486 PRK06731 flhF flagellar biosyn 94.6 0.85 1.8E-05 44.1 13.4 36 214-249 75-110 (270)
487 TIGR00073 hypB hydrogenase acc 94.6 0.045 9.7E-07 51.0 4.5 30 211-240 19-48 (207)
488 PF08477 Miro: Miro-like prote 94.6 0.029 6.2E-07 46.8 2.9 21 217-237 2-22 (119)
489 PF00006 ATP-synt_ab: ATP synt 94.6 0.033 7.2E-07 51.9 3.5 27 215-241 16-42 (215)
490 cd00820 PEPCK_HprK Phosphoenol 94.6 0.033 7.2E-07 45.3 3.1 22 214-235 15-36 (107)
491 PRK11174 cysteine/glutathione 94.6 0.18 3.9E-06 55.2 9.9 26 213-238 375-400 (588)
492 cd01672 TMPK Thymidine monopho 94.5 0.078 1.7E-06 48.8 6.0 26 216-241 2-27 (200)
493 PLN02165 adenylate isopentenyl 94.5 0.037 8.1E-07 54.6 4.0 28 212-239 41-68 (334)
494 TIGR01447 recD exodeoxyribonuc 94.5 0.2 4.2E-06 54.2 9.7 27 214-240 160-186 (586)
495 cd03213 ABCG_EPDR ABCG transpo 94.5 0.21 4.5E-06 46.0 8.7 26 213-238 34-59 (194)
496 cd00046 DEXDc DEAD-like helica 94.5 0.14 3.1E-06 43.5 7.2 34 216-249 2-37 (144)
497 PRK14493 putative bifunctional 94.5 0.045 9.8E-07 53.1 4.3 34 215-249 2-35 (274)
498 PRK06761 hypothetical protein; 94.5 0.044 9.4E-07 53.1 4.2 27 215-241 4-30 (282)
499 cd01857 HSR1_MMR1 HSR1/MMR1. 94.4 0.36 7.7E-06 41.8 9.6 47 63-111 3-49 (141)
500 PRK13407 bchI magnesium chelat 94.4 0.035 7.7E-07 55.4 3.6 49 187-238 4-53 (334)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-79 Score=704.28 Aligned_cols=519 Identities=42% Similarity=0.706 Sum_probs=458.4
Q ss_pred CCCCcccEEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhHHH
Q 043805 13 TAQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCLNE 92 (555)
Q Consensus 13 ~~~~~~dvFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~E 92 (555)
++.++|||||||+|+|+|..|+.||+++|.++||.+|.|+ ++++|+.+..++.+||++|+++|+|+|++|++|+||++|
T Consensus 8 ~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~e 86 (1153)
T PLN03210 8 SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNE 86 (1153)
T ss_pred CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHH
Confidence 3578999999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhcCCEEEEEEeeeCCccccccCCChhhhHHhhhhh-ChhhHHHHHHHHHHhhhhcCCcccccchhhHHHhh
Q 043805 93 LVKILDCKKINGQIVIPVFYQVDPSNVRKQSGSFGEAFDEYEKN-FPNMVQKWRDALTQASNISGYHESRTFRNEAELVE 171 (555)
Q Consensus 93 l~~~~~~~~~~~~~v~pv~~~v~p~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~e~~~~~ 171 (555)
|.+++++++.++++|+||||+|+|++|++|+|.|+++|.++..+ ..+++++|++||++++++.|+ ++..|.+|++.++
T Consensus 87 l~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~-~~~~~~~E~~~i~ 165 (1153)
T PLN03210 87 LLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGY-HSQNWPNEAKMIE 165 (1153)
T ss_pred HHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCce-ecCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988765 347899999999999999999 8888999999999
Q ss_pred hhhhhhhcccccCCCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEec
Q 043805 172 NIVEDISEKLEDMSNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADV 251 (555)
Q Consensus 172 ~i~~~v~~~l~~~~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 251 (555)
+|+.+|..++.. .++...+.+|||++.+++|..+|....++.++|+|+||||+||||||+.+++++..+|+..+|+...
T Consensus 166 ~Iv~~v~~~l~~-~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 166 EIANDVLGKLNL-TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HHHHHHHHhhcc-ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 999999999986 7777889999999999999999986667799999999999999999999999999999998887531
Q ss_pred --hhhc---c------ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCC
Q 043805 252 --REES---N------KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKF 320 (555)
Q Consensus 252 --~~~~---~------~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~ 320 (555)
.... . ......+..+++..+..... ..... ...+++.+.++++||||||+|+ ..+++.+.....+.
T Consensus 245 ~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~-~~~~~-~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~ 321 (1153)
T PLN03210 245 FISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD-IKIYH-LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWF 321 (1153)
T ss_pred ccccchhhcccccccccchhHHHHHHHHHHHhCCCC-cccCC-HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccC
Confidence 1000 0 01122344555555543321 11111 2567788999999999999998 88899888777777
Q ss_pred CCCceEEEEeCchhhhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcC
Q 043805 321 SPGSRIIITTRDKRVLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQ 400 (555)
Q Consensus 321 ~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~ 400 (555)
++|++||||||+..++...+....++++.|+.++|++||+..+|+...+.+...+++.+|+++|+|+||||+.+|++|++
T Consensus 322 ~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~ 401 (1153)
T PLN03210 322 GSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG 401 (1153)
T ss_pred CCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC
Confidence 89999999999999887776778999999999999999999999877677778899999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCH-hhHHHHhhhccccCccchhhhHhhhcCC-ccHHHHHHHHHhccce
Q 043805 401 KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNS-EEKEIFLDIACFFNGEYIDFVTRIQDDP-MSIRDRLNILIDKSLI 478 (555)
Q Consensus 401 ~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl 478 (555)
++..+|...++++....+..+..+|..||+.|++ .+|.+|+++|||+.+...+.+..+++.. .++...++.|++++||
T Consensus 402 k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi 481 (1153)
T PLN03210 402 RDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLI 481 (1153)
T ss_pred CCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCE
Confidence 9999999999999887788899999999999976 5899999999999998888887777665 6677789999999999
Q ss_pred eEeccCCEEEccHHHHHHHHHHHhhcCCCCCCCcccccCchhHHHHHhcCCc--cEEEEEEeec
Q 043805 479 TISSYGNRLRMHDLLQEMGQIIVRQESVKEPCKRSRLWDHNDVYHVLKKNKV--RVTDLTFTIN 540 (555)
Q Consensus 479 ~~~~~~~~~~~H~lvr~~~~~~~~~~~~~~~~~r~rl~~~~~~~~~l~~~~~--~~~~~~~~~~ 540 (555)
+.. ++++.||+|+|+++++++++++ ..|++|+|+|.+.++.+++.+++| +++++.++..
T Consensus 482 ~~~--~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 482 HVR--EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred EEc--CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 886 5789999999999999999886 679999999999999999998887 7888887643
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-36 Score=331.07 Aligned_cols=302 Identities=30% Similarity=0.424 Sum_probs=259.8
Q ss_pred ccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh---hhcCCCceEEEEechhhccccChHHHHHHHHHH
Q 043805 194 VGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ---ISRDFQGKCFVADVREESNKMGVIHVRDEVISR 270 (555)
Q Consensus 194 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 270 (555)
||.+..++.+.+.|...+ .++++|+||||+||||||+++.++ ++.+|+..+|+. .+.......++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999987443 389999999999999999999985 567899999998 67788899999999998
Q ss_pred HhCCccCC---CCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhhhhh-cCCCeEEE
Q 043805 271 VLGENLKI---GTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRVLDK-CGVDNIFE 346 (555)
Q Consensus 271 ~~~~~~~~---~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~-~~~~~~~~ 346 (555)
++...... ....+...+.+.|.++|++|||||+|+ ...|+.+...++....|++|++|||+..++.. ++....++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 88754432 235777888999999999999999999 67799998888877788999999999999888 67778899
Q ss_pred eecCChHHHHHHHHHHhhcc-CCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCC-CHHHHHHHHHhhccC-------C
Q 043805 347 VKGLQHSKALELFCRKAFRQ-NNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQK-SKQQWEDKLHNLKLI-------S 417 (555)
Q Consensus 347 l~~L~~~ea~~Ll~~~~~~~-~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~~~~~~~~l~~l~~~-------~ 417 (555)
++.|+.+|||.||++.++.. ....+..++++++++++|+|+|||+..+|..|+.+ +..+|..+...+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 99999999999999999765 33335579999999999999999999999999984 677999999987654 1
Q ss_pred CccHHHHHHHhHhcCCHhhHHHHhhhccccCc--cchhhhHhhhcCC-------------ccHHHHHHHHHhccceeEec
Q 043805 418 EPSIYKVLKISYDELNSEEKEIFLDIACFFNG--EYIDFVTRIQDDP-------------MSIRDRLNILIDKSLITISS 482 (555)
Q Consensus 418 ~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~-------------~~~~~~l~~L~~~sLl~~~~ 482 (555)
...+..++..||+.|+++.+.||+|||.||++ +..+.+...|.++ ....+++.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 34688999999999998899999999999998 4566788887653 24567899999999999864
Q ss_pred c---CCEEEccHHHHHHHHHHHh
Q 043805 483 Y---GNRLRMHDLLQEMGQIIVR 502 (555)
Q Consensus 483 ~---~~~~~~H~lvr~~~~~~~~ 502 (555)
. ...+.|||+||++|..+++
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhc
Confidence 2 2579999999999999998
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=268.14 Aligned_cols=158 Identities=28% Similarity=0.478 Sum_probs=142.1
Q ss_pred CCCCCCcccEEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhH
Q 043805 11 GLTAQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCL 90 (555)
Q Consensus 11 ~~~~~~~~dvFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~ 90 (555)
+++.+++|||||||+|+|++..|++||+++|+++||+||+|++++.+|+.+.+.|.+||++|+++|+|+|++|++|+||+
T Consensus 20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL 99 (187)
T PLN03194 20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL 99 (187)
T ss_pred CCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhcCCEEEEEEeeeCCcccccc-CCChhhhHHhhhhhChhhHHHHHHHHHHhhhhcCCccccc-chhhHH
Q 043805 91 NELVKILDCKKINGQIVIPVFYQVDPSNVRKQ-SGSFGEAFDEYEKNFPNMVQKWRDALTQASNISGYHESRT-FRNEAE 168 (555)
Q Consensus 91 ~El~~~~~~~~~~~~~v~pv~~~v~p~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~e~~ 168 (555)
+||.+++++. .+||||||+|+|++|++| .+. ...+.+++|++||++++++.|+ .+.. .++|++
T Consensus 100 dEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~-~~~~~~~~e~e 164 (187)
T PLN03194 100 HELALIMESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGL-TFDSLKGNWSE 164 (187)
T ss_pred HHHHHHHHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccc-cCCCCCCCHHH
Confidence 9999999753 479999999999999997 332 1347899999999999999999 5542 477999
Q ss_pred Hhhhhhhhhhccccc
Q 043805 169 LVENIVEDISEKLED 183 (555)
Q Consensus 169 ~~~~i~~~v~~~l~~ 183 (555)
.+++|+..|.++|..
T Consensus 165 ~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 165 VVTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.5e-35 Score=289.00 Aligned_cols=262 Identities=32% Similarity=0.509 Sum_probs=203.1
Q ss_pred chhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh--hhcCCCceEEEEechhhccccChHHHHHHHHHHHhC
Q 043805 196 LNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ--ISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLG 273 (555)
Q Consensus 196 R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 273 (555)
|+.++++|.+.|....++.++|+|+|+||+|||+||.+++++ .+.+|+.++|+. .........++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999865578999999999999999999999988 788998888887 34444557788888888877
Q ss_pred CccC----CCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhcCC-CeEEEee
Q 043805 274 ENLK----IGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKCGV-DNIFEVK 348 (555)
Q Consensus 274 ~~~~----~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~-~~~~~l~ 348 (555)
.... .+...+...+.+.+.++++||||||+|+ ...++.+...++....+++||||||+..+...... ...++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 6432 2445677888899999999999999999 77777776666555578999999999887665543 6789999
Q ss_pred cCChHHHHHHHHHHhhccC-CCChhHHHHHHHHHHHhcCCchHHHHHHhhhcC-CCHHHHHHHHHhhccC------CCcc
Q 043805 349 GLQHSKALELFCRKAFRQN-NRSHDLLELSQEVVCYADGNPLALEVLGSSLHQ-KSKQQWEDKLHNLKLI------SEPS 420 (555)
Q Consensus 349 ~L~~~ea~~Ll~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~-~~~~~~~~~l~~l~~~------~~~~ 420 (555)
+|+.+|+.+||.+.++... ...+..++.+++|++.|+|+||||.++|++|+. .+..+|...++.+... ....
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999986554 233444667899999999999999999999954 2567788887765432 2467
Q ss_pred HHHHHHHhHhcCCHhhHHHHhhhccccCc--cchhhhHhhhcCC
Q 043805 421 IYKVLKISYDELNSEEKEIFLDIACFFNG--EYIDFVTRIQDDP 462 (555)
Q Consensus 421 l~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~ 462 (555)
+..++..||+.|+++.|.||.+||+|+.+ ++.+.+..+|..+
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e 279 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAE 279 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHC
Confidence 99999999999999999999999999987 5688999999874
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.83 E-value=7.6e-19 Score=201.20 Aligned_cols=298 Identities=16% Similarity=0.163 Sum_probs=196.9
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHH
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
.||+.+..+|-|+..++.|.+. ...++++|+||+|.||||++.++++.. +.+.|+. +.. ...+...++
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~--~d~~~~~f~ 75 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDE--SDNQPERFA 75 (903)
T ss_pred CCCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCc--ccCCHHHHH
Confidence 5777888999999888888653 346899999999999999999998643 2578886 221 223334444
Q ss_pred HHHHHHHhCCccC-----------CCCCc---hhHHHHHHhc--cCceEEEEeCCCCc--H---HHHHHHhcCCCCCCCC
Q 043805 265 DEVISRVLGENLK-----------IGTPT---IPQNIRKRLQ--RIKVLIVLDDVHDG--F---TQLENLVGGSDKFSPG 323 (555)
Q Consensus 265 ~~ll~~~~~~~~~-----------~~~~~---l~~~l~~~l~--~~~~LlVlDdv~~~--~---~~~~~l~~~~~~~~~~ 323 (555)
..++..+...... .+... +...+...+. +.+++|||||++.. . +.+..++... .++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~ 152 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PEN 152 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCC
Confidence 5555554311110 01112 2222333332 57999999999541 1 2344444443 477
Q ss_pred ceEEEEeCchhhhhh--c-CCCeEEEee----cCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 324 SRIIITTRDKRVLDK--C-GVDNIFEVK----GLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 324 ~~iliTsR~~~~~~~--~-~~~~~~~l~----~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
.++|||||....... . ......+|+ +|+.+|+.+||....+. ....+.+.+|++.|+|+|+++.+++.
T Consensus 153 ~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 153 LTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred eEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHHHH
Confidence 899999998432211 1 112345566 99999999999876622 12245578999999999999999987
Q ss_pred hhcCCCHHHHHHHHHhhccCCCccHHHHHHH-hHhcCCHhhHHHHhhhccccCccchhhhHhhhcCCccHHHHHHHHHhc
Q 043805 397 SLHQKSKQQWEDKLHNLKLISEPSIYKVLKI-SYDELNSEEKEIFLDIACFFNGEYIDFVTRIQDDPMSIRDRLNILIDK 475 (555)
Q Consensus 397 ~l~~~~~~~~~~~l~~l~~~~~~~l~~~l~~-s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~l~~L~~~ 475 (555)
.+..... ........+.......+...+.. .++.||++.+.++..+|+++ .++.+.+..+.+. .+....|+.|.+.
T Consensus 228 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~-~~~~~~L~~l~~~ 304 (903)
T PRK04841 228 SARQNNS-SLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE-ENGQMRLEELERQ 304 (903)
T ss_pred HHhhCCC-chhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC-CcHHHHHHHHHHC
Confidence 7754321 01111122222123446665544 48999999999999999986 7887777766654 4678899999999
Q ss_pred cceeEe--ccCCEEEccHHHHHHHHHHHhhcC
Q 043805 476 SLITIS--SYGNRLRMHDLLQEMGQIIVRQES 505 (555)
Q Consensus 476 sLl~~~--~~~~~~~~H~lvr~~~~~~~~~~~ 505 (555)
+|+... +++.+|++|+++++++++.+..+.
T Consensus 305 ~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 305 GLFIQRMDDSGEWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred CCeeEeecCCCCEEehhHHHHHHHHHHHHhcC
Confidence 997643 223589999999999999986553
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.82 E-value=7.5e-20 Score=160.24 Aligned_cols=133 Identities=43% Similarity=0.706 Sum_probs=108.1
Q ss_pred cccEEEcCcc-cccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhHHHHHH
Q 043805 17 KYEVFLSFRG-EDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCLNELVK 95 (555)
Q Consensus 17 ~~dvFiSy~~-~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~ 95 (555)
+|||||||++ +|....|+.+|...|...|+.+|.|++.. |......|.++|++|+++|+|+||+|+.|+||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 34455899999999999999999997543 33333499999999999999999999999999999999
Q ss_pred HHHhHHh-cCCEEEEEEeeeCCccccccCCChhhhHHhhhhhChhhH--HHHHHHHHHh
Q 043805 96 ILDCKKI-NGQIVIPVFYQVDPSNVRKQSGSFGEAFDEYEKNFPNMV--QKWRDALTQA 151 (555)
Q Consensus 96 ~~~~~~~-~~~~v~pv~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~ 151 (555)
++..... .+.+||||+++..|..+..+.+.+...+........+.. ..|++.+..+
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l 137 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAV 137 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHh
Confidence 9988755 567999999998887788888888888776633333333 4788776654
No 7
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.80 E-value=3e-18 Score=179.40 Aligned_cols=302 Identities=15% Similarity=0.183 Sum_probs=207.2
Q ss_pred CCCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 184 MSNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 184 ~~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
+.+|..+.+.|-|.+.++.|.+.. +.+.+.|+.|+|.|||||+.+++. ....-..+.|+....+ +.++..+
T Consensus 12 ~~~P~~~~~~v~R~rL~~~L~~~~-----~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~---dndp~rF 82 (894)
T COG2909 12 LVRPVRPDNYVVRPRLLDRLRRAN-----DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES---DNDPARF 82 (894)
T ss_pred cCCCCCcccccccHHHHHHHhcCC-----CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc---cCCHHHH
Confidence 356777889999999888887653 579999999999999999999998 4445567888874333 3445556
Q ss_pred HHHHHHHHhCCccCC--------------CCCchhHHHHHHhc--cCceEEEEeCCCC-----cHHHHHHHhcCCCCCCC
Q 043805 264 RDEVISRVLGENLKI--------------GTPTIPQNIRKRLQ--RIKVLIVLDDVHD-----GFTQLENLVGGSDKFSP 322 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~--------------~~~~l~~~l~~~l~--~~~~LlVlDdv~~-----~~~~~~~l~~~~~~~~~ 322 (555)
+..++..+....+.. +...+.+.+..-+. .+|++|||||.+- ....+..++...+ +
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---E 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---C
Confidence 666666554322211 12223333333333 3689999999943 2344666666654 8
Q ss_pred CceEEEEeCchhhhhhcC---CCeEEEee----cCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 323 GSRIIITTRDKRVLDKCG---VDNIFEVK----GLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 323 ~~~iliTsR~~~~~~~~~---~~~~~~l~----~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
+..+|+|||....+.... ....++++ .|+.+|+.++|..... .+-....+..+++.++|.+-||.+++
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHH
Confidence 999999999874332211 12234444 4899999999988762 22234457899999999999999998
Q ss_pred hhhcCCC-HHHHHHHHHhhccCCCccH-HHHHHHhHhcCCHhhHHHHhhhccccCccchhhhHhhhcCCccHHHHHHHHH
Q 043805 396 SSLHQKS-KQQWEDKLHNLKLISEPSI-YKVLKISYDELNSEEKEIFLDIACFFNGEYIDFVTRIQDDPMSIRDRLNILI 473 (555)
Q Consensus 396 ~~l~~~~-~~~~~~~l~~l~~~~~~~l-~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~l~~L~ 473 (555)
-.+++.+ ..... ..+... ..-+ .-+.+..++.||++.+.++..+|++ +.|.-+.+.++.+. .+....|++|.
T Consensus 235 La~~~~~~~~q~~---~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl-~~f~~eL~~~Ltg~-~ng~amLe~L~ 308 (894)
T COG2909 235 LALRNNTSAEQSL---RGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVL-SRFNDELCNALTGE-ENGQAMLEELE 308 (894)
T ss_pred HHccCCCcHHHHh---hhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhH-HHhhHHHHHHHhcC-CcHHHHHHHHH
Confidence 8887322 22211 111111 1122 3345667999999999999999998 34555555555444 57778899999
Q ss_pred hcccee--EeccCCEEEccHHHHHHHHHHHhhcCCCC
Q 043805 474 DKSLIT--ISSYGNRLRMHDLLQEMGQIIVRQESVKE 508 (555)
Q Consensus 474 ~~sLl~--~~~~~~~~~~H~lvr~~~~~~~~~~~~~~ 508 (555)
+++|+. .++++++|++|+++.+|.+.....+.+..
T Consensus 309 ~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~ 345 (894)
T COG2909 309 RRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAAR 345 (894)
T ss_pred hCCCceeeecCCCceeehhHHHHHHHHhhhccccCCc
Confidence 999987 45557899999999999999998865443
No 8
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.79 E-value=5.1e-20 Score=161.00 Aligned_cols=128 Identities=35% Similarity=0.627 Sum_probs=106.5
Q ss_pred EEEcCcc-cccccchHHHHHHHHHhc--CCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhHHHHHHH
Q 043805 20 VFLSFRG-EDTRNGFTSHLAAALHRK--QIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCLNELVKI 96 (555)
Q Consensus 20 vFiSy~~-~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~ 96 (555)
|||||++ .| +..|+.+|...|++. |+++|++++|+.||..+.++|.++|++|+++|+|+|++|++|.||+.|+..+
T Consensus 1 vfisy~~~~d-~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDD-REWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHG-HHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCc-HHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 7999999 55 667899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhcC--CEEEEEEeeeCCcccc-ccCCChhhhHHhhhhhC-----hhhHHHHHHHH
Q 043805 97 LDCKKING--QIVIPVFYQVDPSNVR-KQSGSFGEAFDEYEKNF-----PNMVQKWRDAL 148 (555)
Q Consensus 97 ~~~~~~~~--~~v~pv~~~v~p~~v~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l 148 (555)
+.+....+ .+|+||++++.++++. .+.+.+...+....... ......|+++.
T Consensus 80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~ 139 (141)
T PF01582_consen 80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLR 139 (141)
T ss_dssp HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHH
T ss_pred hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHh
Confidence 99987755 7999999999999998 56666665554443322 23466777665
No 9
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.68 E-value=1.4e-17 Score=137.14 Aligned_cols=87 Identities=36% Similarity=0.624 Sum_probs=76.3
Q ss_pred EEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhHHHHHHHHHh
Q 043805 20 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCLNELVKILDC 99 (555)
Q Consensus 20 vFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~~ 99 (555)
|||||+++|. .|+++|...|++.|+++|+|. ++.+|+.+.+.|.++|++|+.+|+++|++|..|+||..|+..+.
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~-- 75 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW-- 75 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH--
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH--
Confidence 8999999997 899999999999999999997 99999999999999999999999999999999999999999984
Q ss_pred HHhcCCEEEEEEee
Q 043805 100 KKINGQIVIPVFYQ 113 (555)
Q Consensus 100 ~~~~~~~v~pv~~~ 113 (555)
+.+..|+||.++
T Consensus 76 --~~~~~iipv~~~ 87 (102)
T PF13676_consen 76 --KRGKPIIPVRLD 87 (102)
T ss_dssp --CTSESEEEEECS
T ss_pred --HCCCEEEEEEEC
Confidence 345579999954
No 10
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.64 E-value=3.1e-15 Score=165.67 Aligned_cols=326 Identities=15% Similarity=0.232 Sum_probs=206.1
Q ss_pred CcccchhhHHHHHhhhccc-CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE----echhhccccChHHHHHH
Q 043805 192 SFVGLNSRIEEMKSLMCLE-SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA----DVREESNKMGVIHVRDE 266 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~----~~~~~~~~~~~~~~~~~ 266 (555)
.++||+.+++.|...+... .+...++.|.|.+|||||+|++++...+.+.. +.++. ......+-..+...++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 3799999999999988743 34577999999999999999999999876652 11111 11111122223334444
Q ss_pred HHHHHhCCccCC------------------------------C---------CCc--------hhHHHHHHh-ccCceEE
Q 043805 267 VISRVLGENLKI------------------------------G---------TPT--------IPQNIRKRL-QRIKVLI 298 (555)
Q Consensus 267 ll~~~~~~~~~~------------------------------~---------~~~--------l~~~l~~~l-~~~~~Ll 298 (555)
++.++....... + ... +...+.... +.+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 444442221100 0 000 001111122 3469999
Q ss_pred EEeCC-CCcHHHHHHH---hcCCC---CCCCCceEEEEeCch--hhhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCC
Q 043805 299 VLDDV-HDGFTQLENL---VGGSD---KFSPGSRIIITTRDK--RVLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNR 369 (555)
Q Consensus 299 VlDdv-~~~~~~~~~l---~~~~~---~~~~~~~iliTsR~~--~~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~ 369 (555)
|+||+ |.+..+++.+ ..... .....+..+.|.+.. .+.......+.+.|.||+..+...|+...+...
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 99999 7655554443 32221 000122223333322 112222345789999999999999999988432
Q ss_pred ChhHHHHHHHHHHHhcCCchHHHHHHhhhcCC-------CHHHHHHHHHhhccCC-CccHHHHHHHhHhcCCHhhHHHHh
Q 043805 370 SHDLLELSQEVVCYADGNPLALEVLGSSLHQK-------SKQQWEDKLHNLKLIS-EPSIYKVLKISYDELNSEEKEIFL 441 (555)
Q Consensus 370 ~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-------~~~~~~~~l~~l~~~~-~~~l~~~l~~s~~~L~~~~~~~l~ 441 (555)
.....+....|++++.|||+++.++-..+.+. +...|......+.... ...+...+...++.||..++.++.
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22335678899999999999999999988653 2334444333333221 123556789999999999999999
Q ss_pred hhccccCccchhhhHhhhcCC--ccHHHHHHHHHhccceeEe-----cc--CCE-EEc-cHHHHHHHHHHHhhcCCCCCC
Q 043805 442 DIACFFNGEYIDFVTRIQDDP--MSIRDRLNILIDKSLITIS-----SY--GNR-LRM-HDLLQEMGQIIVRQESVKEPC 510 (555)
Q Consensus 442 ~la~f~~~~~~~~l~~~~~~~--~~~~~~l~~L~~~sLl~~~-----~~--~~~-~~~-H~lvr~~~~~~~~~~~~~~~~ 510 (555)
.+||++..|+.+.+..++... ..+...+..|....++-.. .. .-. |++ |+++|+++...+.++
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------ 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------
Confidence 999999999999999999854 5555666666666555421 10 112 445 999999999887443
Q ss_pred CcccccCchhHHHHHhcCCc
Q 043805 511 KRSRLWDHNDVYHVLKKNKV 530 (555)
Q Consensus 511 ~r~rl~~~~~~~~~l~~~~~ 530 (555)
+|. ..|..+...|..+.+
T Consensus 390 ~rq--~~H~~i~~lL~~~~~ 407 (849)
T COG3899 390 QRQ--YLHLRIGQLLEQNIP 407 (849)
T ss_pred hHH--HHHHHHHHHHHHhCC
Confidence 333 448888888877654
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=1.5e-12 Score=134.66 Aligned_cols=289 Identities=13% Similarity=0.082 Sum_probs=171.9
Q ss_pred ccCCCCCCCCCcccchhhHHHHHhhhccc--CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC--ceEEEEechhhccc
Q 043805 182 EDMSNSTDLDSFVGLNSRIEEMKSLMCLE--SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ--GKCFVADVREESNK 257 (555)
Q Consensus 182 ~~~~~~~~~~~fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~ 257 (555)
..+.+...|+.|+||+.++++|...+... ...++.+.|+|++|+|||++++.+++.+....+ ..+++.+ ...
T Consensus 21 ~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~----~~~ 96 (394)
T PRK00411 21 EVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC----QID 96 (394)
T ss_pred hhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC----CcC
Confidence 33445556788999999999999988532 234556889999999999999999998765542 2334332 122
Q ss_pred cChHHHHHHHHHHHhCCcc---CCCCCchhHHHHHHhc--cCceEEEEeCCCCc-----HHHHHHHhcCCCCCC-CCceE
Q 043805 258 MGVIHVRDEVISRVLGENL---KIGTPTIPQNIRKRLQ--RIKVLIVLDDVHDG-----FTQLENLVGGSDKFS-PGSRI 326 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~~~~---~~~~~~l~~~l~~~l~--~~~~LlVlDdv~~~-----~~~~~~l~~~~~~~~-~~~~i 326 (555)
.....++..++.++..... ..+...+...+.+.+. +++.+||||+++.. .+.+..+........ .+..+
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~v 176 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGV 176 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEE
Confidence 3445667777777765221 1233344555555554 35689999999761 123444443322211 23446
Q ss_pred EEEeCchhhhhhc-------CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHh----cCCchHHHHHH
Q 043805 327 IITTRDKRVLDKC-------GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYA----DGNPLALEVLG 395 (555)
Q Consensus 327 liTsR~~~~~~~~-------~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLal~~~a 395 (555)
|.++....+.... -....+.+++++.++..+++..++........-..+.++.+++.+ |..+.++..+-
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6666544322211 123468999999999999999886322111111233445555444 44666666654
Q ss_pred hhh--c---C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhcccc----CccchhhhH-------
Q 043805 396 SSL--H---Q---KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFF----NGEYIDFVT------- 456 (555)
Q Consensus 396 ~~l--~---~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~------- 456 (555)
... . + -+...+....+.. -...+...+..||..++.+|..++... ..+....+.
T Consensus 257 ~a~~~a~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 257 RAGLIAEREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 322 1 1 1344444444433 123445678999999999988887553 223333222
Q ss_pred hhhcC-C---ccHHHHHHHHHhccceeEe
Q 043805 457 RIQDD-P---MSIRDRLNILIDKSLITIS 481 (555)
Q Consensus 457 ~~~~~-~---~~~~~~l~~L~~~sLl~~~ 481 (555)
...+. + ....+.+..|...|||...
T Consensus 330 ~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 330 EELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 22222 1 4567799999999999864
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.45 E-value=6.8e-11 Score=121.03 Aligned_cols=286 Identities=17% Similarity=0.145 Sum_probs=164.2
Q ss_pred CCCCCCCcccchhhHHHHHhhhcc--cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC------ceEEEEechhhccc
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCL--ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ------GKCFVADVREESNK 257 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~ 257 (555)
+-..|+.|+||+.++++|...+.. .....+.+.|+|++|+|||++++.+++.+..... ..+|+.+. ..
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----IL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CC
Confidence 444567899999999999998863 1233567899999999999999999987654322 23444422 22
Q ss_pred cChHHHHHHHHHHHhC--C-cc--CCCCCchhHHHHHHhc--cCceEEEEeCCCCc----HHHHHHHhcC--CCCC-CCC
Q 043805 258 MGVIHVRDEVISRVLG--E-NL--KIGTPTIPQNIRKRLQ--RIKVLIVLDDVHDG----FTQLENLVGG--SDKF-SPG 323 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~--~-~~--~~~~~~l~~~l~~~l~--~~~~LlVlDdv~~~----~~~~~~l~~~--~~~~-~~~ 323 (555)
.....++..++..+.. . .. ..+...+...+.+.+. +++++||||+++.. .+.+..+... .... +..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 3345666777777642 1 11 1122233444445553 46789999999762 1123333332 1111 134
Q ss_pred ceEEEEeCchhhhhhcC-------CCeEEEeecCChHHHHHHHHHHhhc---cCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 324 SRIIITTRDKRVLDKCG-------VDNIFEVKGLQHSKALELFCRKAFR---QNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 324 ~~iliTsR~~~~~~~~~-------~~~~~~l~~L~~~ea~~Ll~~~~~~---~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
+.+|.++.......... ....+.++|++.+|..+++..++.. ...-.+...+.+..++..+.|.|..+..
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 45555554432211110 1246899999999999999988731 1112222334455667777898855433
Q ss_pred HHhhh-----c-C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhccccC----ccchhhhHh---
Q 043805 394 LGSSL-----H-Q---KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFFN----GEYIDFVTR--- 457 (555)
Q Consensus 394 ~a~~l-----~-~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~----~~~~~~l~~--- 457 (555)
+.... . + -+........+.. -......++..||..++.+|..++.+.. .+....+..
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 32211 1 1 2334444433333 1234456788999998888877663321 222222111
Q ss_pred -hh---cC-C---ccHHHHHHHHHhccceeEec
Q 043805 458 -IQ---DD-P---MSIRDRLNILIDKSLITISS 482 (555)
Q Consensus 458 -~~---~~-~---~~~~~~l~~L~~~sLl~~~~ 482 (555)
++ +. + ....+.+..|...|||+...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 319 EVCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11 11 1 45678899999999999753
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.44 E-value=3.2e-13 Score=129.02 Aligned_cols=197 Identities=19% Similarity=0.226 Sum_probs=101.4
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH------HHH
Q 043805 193 FVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV------RDE 266 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------~~~ 266 (555)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|+.++.+.........+|+........ ...... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 899999999999998743 34689999999999999999999988554334444432221111 011111 011
Q ss_pred HHHHHhCCccCC-----------CCCchhHHHHHHhc--cCceEEEEeCCCCcH-------H---HHHHHhcCCCCCCCC
Q 043805 267 VISRVLGENLKI-----------GTPTIPQNIRKRLQ--RIKVLIVLDDVHDGF-------T---QLENLVGGSDKFSPG 323 (555)
Q Consensus 267 ll~~~~~~~~~~-----------~~~~l~~~l~~~l~--~~~~LlVlDdv~~~~-------~---~~~~l~~~~~~~~~~ 323 (555)
+...+....... ........+.+.+. +++++||+||++... . .+..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 111111111110 11122223333333 245999999996522 1 12222222222 234
Q ss_pred ceEEEEeCchhhhhh--------cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 324 SRIIITTRDKRVLDK--------CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 324 ~~iliTsR~~~~~~~--------~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
..+|++......... .+....+.|++|+.+++.+++....... ...+...+..++|+..+||+|..|..+
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 445555544433322 2334459999999999999999876332 111224566799999999999998753
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.43 E-value=7.6e-12 Score=124.66 Aligned_cols=255 Identities=15% Similarity=0.170 Sum_probs=148.3
Q ss_pred CCcccchhhHHHHHhhhccc---CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLE---SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
..|+|+++.+++|..++... ....+.+.|+|++|+|||+||..+++.+...+ ..... ...... ..+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~~~~---~~~~~~-~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KITSG---PALEKP-GDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EEecc---chhcCc-hhHHHH
Confidence 45999999999999888621 23355688999999999999999998875432 11100 000001 111111
Q ss_pred HHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH-HHHHHHhcCCC-------------------CCCCCceEE
Q 043805 268 ISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF-TQLENLVGGSD-------------------KFSPGSRII 327 (555)
Q Consensus 268 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~l~~~~~-------------------~~~~~~~il 327 (555)
+..+ +...+|++|+++... ...+.+...+. ...+.+-|.
T Consensus 76 l~~~---------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 76 LTNL---------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred HHhc---------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 1111 123466666664311 11111111100 011334455
Q ss_pred EEeCchhhhhhc--CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHH
Q 043805 328 ITTRDKRVLDKC--GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQKSKQQ 405 (555)
Q Consensus 328 iTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~~ 405 (555)
.|++...+.... .....+.+++++.++..+++...+.... ....++.+..|++.|+|.|..+..++..+..
T Consensus 135 ~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~----- 207 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRD----- 207 (305)
T ss_pred ecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHH-----
Confidence 566654322211 1235689999999999999998874322 2234567889999999999877666553310
Q ss_pred HHHHHHhhccCCCc---cHHHHHHHhHhcCCHhhHHHHh-hhccccC-ccchhhhHhhhcCC-ccHHHHHH-HHHhccce
Q 043805 406 WEDKLHNLKLISEP---SIYKVLKISYDELNSEEKEIFL-DIACFFN-GEYIDFVTRIQDDP-MSIRDRLN-ILIDKSLI 478 (555)
Q Consensus 406 ~~~~l~~l~~~~~~---~l~~~l~~s~~~L~~~~~~~l~-~la~f~~-~~~~~~l~~~~~~~-~~~~~~l~-~L~~~sLl 478 (555)
...... ....... .....+...+..|++.++..|. .++.+.. ++..+.++..++.+ ..++..++ .|++.+||
T Consensus 208 ~a~~~~-~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 208 FAQVRG-QKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHcC-CCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCc
Confidence 000000 0000001 1111134456788888888777 4355543 47888888888887 78888899 69999999
Q ss_pred eEec
Q 043805 479 TISS 482 (555)
Q Consensus 479 ~~~~ 482 (555)
....
T Consensus 287 ~~~~ 290 (305)
T TIGR00635 287 QRTP 290 (305)
T ss_pred ccCC
Confidence 7543
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.38 E-value=2.9e-12 Score=128.60 Aligned_cols=259 Identities=16% Similarity=0.166 Sum_probs=154.3
Q ss_pred CCCCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCL---ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|.....|+||+..++.+..++.. .....+.+.|+|++|+|||+||..+++.+...+ .+.. ..... ....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~---~~~~-~~~~~----~~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI---RITS-GPALE----KPGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe---EEEe-ccccc----ChHH
Confidence 45667899999999999887752 223456788999999999999999999876432 1111 00000 0111
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHHHH-HHHhcCCC-------------------CCCCC
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQL-ENLVGGSD-------------------KFSPG 323 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~-~~l~~~~~-------------------~~~~~ 323 (555)
+..++.. + +...+|++|+++...... +.+...+. ...+.
T Consensus 93 l~~~l~~--------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 93 LAAILTN--------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred HHHHHHh--------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 1112111 1 224466777775311111 11111000 00123
Q ss_pred ceEEEEeCchhhhhhc--CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCC
Q 043805 324 SRIIITTRDKRVLDKC--GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQK 401 (555)
Q Consensus 324 ~~iliTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~ 401 (555)
+-|..|++...+.... .....+++++++.++..+++...+.... ....++.+..|++.|+|.|..+..+...+.
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-- 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVR-- 227 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHH--
Confidence 3455566643322211 1235689999999999999998874332 233456789999999999976666555432
Q ss_pred CHHHHHHHHHhhccCCCc---cHHHHHHHhHhcCCHhhHHHHh-hhcccc-CccchhhhHhhhcCC-ccHHHHHH-HHHh
Q 043805 402 SKQQWEDKLHNLKLISEP---SIYKVLKISYDELNSEEKEIFL-DIACFF-NGEYIDFVTRIQDDP-MSIRDRLN-ILID 474 (555)
Q Consensus 402 ~~~~~~~~l~~l~~~~~~---~l~~~l~~s~~~L~~~~~~~l~-~la~f~-~~~~~~~l~~~~~~~-~~~~~~l~-~L~~ 474 (555)
.|.... .-...... .....+...+..|++..+..|. .+..|. .++..+.++..++.+ ..+++.++ .|++
T Consensus 228 ---~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 228 ---DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred ---HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 111110 00000011 1223344556778888888886 555554 458889999999887 78888899 9999
Q ss_pred ccceeEec
Q 043805 475 KSLITISS 482 (555)
Q Consensus 475 ~sLl~~~~ 482 (555)
.+||....
T Consensus 304 ~~li~~~~ 311 (328)
T PRK00080 304 QGFIQRTP 311 (328)
T ss_pred cCCcccCC
Confidence 99997554
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.35 E-value=6.2e-11 Score=115.89 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=107.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHH--
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKR-- 290 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~-- 290 (555)
+.+.++|+|++|+|||||++.++..+...-...+++. ........++..++..++..............+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 3468899999999999999999987653211222322 112234456666666654332221111222233222
Q ss_pred ---hccCceEEEEeCCCCc-HHHHHHH---hcCCCCCCCCceEEEEeCchhhhhhc----------CCCeEEEeecCChH
Q 043805 291 ---LQRIKVLIVLDDVHDG-FTQLENL---VGGSDKFSPGSRIIITTRDKRVLDKC----------GVDNIFEVKGLQHS 353 (555)
Q Consensus 291 ---l~~~~~LlVlDdv~~~-~~~~~~l---~~~~~~~~~~~~iliTsR~~~~~~~~----------~~~~~~~l~~L~~~ 353 (555)
..+++.+||+||++.. ...++.+ ............|++|.... ..... .....+++++|+.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2567889999999762 2233333 22221112334556665533 11111 12346789999999
Q ss_pred HHHHHHHHHhhccCC--CChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 354 KALELFCRKAFRQNN--RSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 354 ea~~Ll~~~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
|..+++...+..... ...-..+..+.|++.++|+|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999887743221 122346789999999999999999998866
No 17
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.34 E-value=1.2e-12 Score=128.12 Aligned_cols=284 Identities=21% Similarity=0.241 Sum_probs=200.7
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
..+.+.++|+|||||||++.+.++ ++..|+..+++.+....+++..+....... ++-.. .+-+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~---~gl~~--~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGA---LGLHV--QPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhh---ccccc--ccchHHHHHHHHHHh
Confidence 357899999999999999999999 888999999988776666554333222211 11111 111234445668888
Q ss_pred cCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhcCCCeEEEeecCChH-HHHHHHHHHhhccCC---
Q 043805 293 RIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKCGVDNIFEVKGLQHS-KALELFCRKAFRQNN--- 368 (555)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~-ea~~Ll~~~~~~~~~--- 368 (555)
+++.++|+||.+...+....+...+....+...++.|+|+... ........+++|+.. ++.++|...+.....
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 9999999999977566666665555544567789999997633 234556778888776 788998877633221
Q ss_pred CChhHHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHh----hccC------CCccHHHHHHHhHhcCCHhhHH
Q 043805 369 RSHDLLELSQEVVCYADGNPLALEVLGSSLHQKSKQQWEDKLHN----LKLI------SEPSIYKVLKISYDELNSEEKE 438 (555)
Q Consensus 369 ~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~~~~~~l~~----l~~~------~~~~l~~~l~~s~~~L~~~~~~ 438 (555)
-.......+..|+++.+|.|++|+.+++..+.....+....++. +... ........+..|+.-|...++.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 12233556889999999999999999998888776666555443 2211 1235677889999999999999
Q ss_pred HHhhhccccCccchhhhHhhhcCC------ccHHHHHHHHHhccceeEeccC--CEEEccHHHHHHHHHHHhhcC
Q 043805 439 IFLDIACFFNGEYIDFVTRIQDDP------MSIRDRLNILIDKSLITISSYG--NRLRMHDLLQEMGQIIVRQES 505 (555)
Q Consensus 439 ~l~~la~f~~~~~~~~l~~~~~~~------~~~~~~l~~L~~~sLl~~~~~~--~~~~~H~lvr~~~~~~~~~~~ 505 (555)
.+..++.|...|..+.......+. ......+..|++++++...... -.|+.-.-++.|+.+.+.+..
T Consensus 244 ~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 244 LFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999887444433321 3456788999999999876432 257777888888887776654
No 18
>PF05729 NACHT: NACHT domain
Probab=99.17 E-value=2.5e-10 Score=102.76 Aligned_cols=142 Identities=19% Similarity=0.296 Sum_probs=84.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCC-----ceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQ-----GKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRK 289 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~ 289 (555)
|++.|+|.+|+|||+++..++..+..... ...++...+..........+...+....... . ......+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~----~~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-I----APIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-h----hhhHHHHHH
Confidence 57899999999999999999987765532 2233333333333222222222222222211 1 111111222
Q ss_pred -HhccCceEEEEeCCCCcHH------------HHHHHhcCCCCCCCCceEEEEeCchhh---hhhcCCCeEEEeecCChH
Q 043805 290 -RLQRIKVLIVLDDVHDGFT------------QLENLVGGSDKFSPGSRIIITTRDKRV---LDKCGVDNIFEVKGLQHS 353 (555)
Q Consensus 290 -~l~~~~~LlVlDdv~~~~~------------~~~~l~~~~~~~~~~~~iliTsR~~~~---~~~~~~~~~~~l~~L~~~ 353 (555)
....++++||||+++.... .+..++.. ...++++++||+|.... .........++|.+|+.+
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 2246799999999965111 12223322 12378999999998655 223334468999999999
Q ss_pred HHHHHHHHHh
Q 043805 354 KALELFCRKA 363 (555)
Q Consensus 354 ea~~Ll~~~~ 363 (555)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.00 E-value=6.8e-08 Score=103.44 Aligned_cols=285 Identities=10% Similarity=0.050 Sum_probs=147.9
Q ss_pred CCCCCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-----CC--ceEEEEechhhc
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCL---ESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-----FQ--GKCFVADVREES 255 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~--~~~~~~~~~~~~ 255 (555)
+-..|+.+.||+.|+++|...|.. +.....++.|+|++|.|||++++.+...+... .+ ..+++.+..
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~--- 826 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN--- 826 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc---
Confidence 445668899999999999998863 22334567899999999999999998876432 12 234444221
Q ss_pred cccChHHHHHHHHHHHhCCccCCC--CCchhHHHHHHhc---cCceEEEEeCCCCc----HHHHHHHhcCCCCCCCCceE
Q 043805 256 NKMGVIHVRDEVISRVLGENLKIG--TPTIPQNIRKRLQ---RIKVLIVLDDVHDG----FTQLENLVGGSDKFSPGSRI 326 (555)
Q Consensus 256 ~~~~~~~~~~~ll~~~~~~~~~~~--~~~l~~~l~~~l~---~~~~LlVlDdv~~~----~~~~~~l~~~~~~~~~~~~i 326 (555)
.......+..+..++.+.....+ ...+...+...+. ....+||||+++.. .+.+-.|.......+....|
T Consensus 827 -Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 827 -VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred -cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 12334445555555544332211 1222333333331 22469999999651 12222233222111122333
Q ss_pred EEEeCchh--------hhhhcCCCeEEEeecCChHHHHHHHHHHhhccC--CCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 327 IITTRDKR--------VLDKCGVDNIFEVKGLQHSKALELFCRKAFRQN--NRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 327 liTsR~~~--------~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
|.++..-. +...+. ...+..+|++.++..+++..++.... ......+-.++.++...|-.=.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 33443211 111111 23467799999999999999884321 11112222222222222333445554433
Q ss_pred hhcC-----CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhccccCc-----cchh-------hhHh--
Q 043805 397 SLHQ-----KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFFNG-----EYID-------FVTR-- 457 (555)
Q Consensus 397 ~l~~-----~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~-----~~~~-------~l~~-- 457 (555)
+... ........+...+ ....+...+..||...+.+|..+...... +... .++.
T Consensus 985 AgEikegskVT~eHVrkAleei-------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~ 1057 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQL-------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETS 1057 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHH-------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhh
Confidence 3321 1123333333222 12234556778988888877755543221 2221 2222
Q ss_pred --hhcCC---ccHHHHHHHHHhccceeEec
Q 043805 458 --IQDDP---MSIRDRLNILIDKSLITISS 482 (555)
Q Consensus 458 --~~~~~---~~~~~~l~~L~~~sLl~~~~ 482 (555)
..+.+ ....+.|.+|...|+|...+
T Consensus 1058 Gk~iGv~plTqRV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1058 GKYIGMCSNNELFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hhhcCCCCcHHHHHHHHHHHHhcCeEEecC
Confidence 11222 23567789999999998774
No 20
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.99 E-value=2.5e-08 Score=103.26 Aligned_cols=182 Identities=20% Similarity=0.247 Sum_probs=109.0
Q ss_pred CCCCCCcccchhhHHH---HHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIEE---MKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|...+.|||++..+.. |.+++.. .....+.|+|++|+||||||+.+++.....| ..+.. . ..+ ...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~---~~l~a---~--~~~-~~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPF---EALSA---V--TSG-VKD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEEec---c--ccc-HHH
Confidence 3445679999988776 7777753 3345788999999999999999998765432 11111 0 011 111
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEE--EeCchhh--h-h
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIII--TTRDKRV--L-D 337 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~ili--TsR~~~~--~-~ 337 (555)
++.++..... ....+++.+|+||+++.. ..+.+.|+..+. .+..++| ||.+... . .
T Consensus 77 ir~ii~~~~~---------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 77 LREVIEEARQ---------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHHH---------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 2222221110 112356789999999751 334555555543 2333333 3444321 1 1
Q ss_pred hcCCCeEEEeecCChHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHhcCCchHHHHHHhh
Q 043805 338 KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRS-HDLLELSQEVVCYADGNPLALEVLGSS 397 (555)
Q Consensus 338 ~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~a~~ 397 (555)
.......+.+.+++.++..+++...+....... ....+....|++.++|.+..+..+...
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 122346889999999999999988763211111 233567888999999999876554443
No 21
>PF14516 AAA_35: AAA-like domain
Probab=98.97 E-value=3.8e-07 Score=91.38 Aligned_cols=285 Identities=13% Similarity=0.122 Sum_probs=154.4
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc--ccChHH
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN--KMGVIH 262 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~ 262 (555)
+.|...+.+|+|...-+++.+.+. .....+.|.|+..+|||+|...+.+.....--..+++. +..... ......
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~---~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIV---QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHh---cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHH
Confidence 456677888999966666665554 22458999999999999999999988865533444444 333222 233444
Q ss_pred HHHHHHHHHhCCcc---C--------C-CCCchhHHHHHHh---ccCceEEEEeCCCCcHH---HHHHHhcCC-------
Q 043805 263 VRDEVISRVLGENL---K--------I-GTPTIPQNIRKRL---QRIKVLIVLDDVHDGFT---QLENLVGGS------- 317 (555)
Q Consensus 263 ~~~~ll~~~~~~~~---~--------~-~~~~l~~~l~~~l---~~~~~LlVlDdv~~~~~---~~~~l~~~~------- 317 (555)
.++.++..+...-. . . ........+.+.+ .+++++|+||+++.... ....++..+
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 44444433322111 0 0 1122223333332 25799999999965211 111221111
Q ss_pred CCC--CCCceEEEEeCch-hhhh-----hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch
Q 043805 318 DKF--SPGSRIIITTRDK-RVLD-----KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL 389 (555)
Q Consensus 318 ~~~--~~~~~iliTsR~~-~~~~-----~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 389 (555)
... -...++++....+ .... ..+....++|++|+.+|...|+..... .. .....++|...+||+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~--~~----~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL--EF----SQEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc--cC----CHHHHHHHHHHHCCCHH
Confidence 000 0223333332221 1111 112345789999999999999987641 11 12338899999999999
Q ss_pred HHHHHHhhhcCC--CHHHHHHHHHhhccCCCccHHHHHHHhHhcC--CHhhHHHHhhhccccCccchhhhHhhhcCCccH
Q 043805 390 ALEVLGSSLHQK--SKQQWEDKLHNLKLISEPSIYKVLKISYDEL--NSEEKEIFLDIACFFNGEYIDFVTRIQDDPMSI 465 (555)
Q Consensus 390 al~~~a~~l~~~--~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L--~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~ 465 (555)
.+..++..+... +.++. ++.-.... .....-+..-+..| .++.+.++..+-.-...+. . .
T Consensus 235 Lv~~~~~~l~~~~~~~~~l---~~~a~~~~-~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~~~-----------~-~ 298 (331)
T PF14516_consen 235 LVQKACYLLVEEQITLEQL---LEEAITDN-GIYNDHLDRLLDRLQQNPELLEAYQQILFSGEPVD-----------L-D 298 (331)
T ss_pred HHHHHHHHHHHccCcHHHH---HHHHHHhc-ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCCcc-----------c-C
Confidence 999999998653 22222 22111100 11223333334444 2333444433322111111 1 1
Q ss_pred HHHHHHHHhccceeEeccCCEEEc-cHHHHHHH
Q 043805 466 RDRLNILIDKSLITISSYGNRLRM-HDLLQEMG 497 (555)
Q Consensus 466 ~~~l~~L~~~sLl~~~~~~~~~~~-H~lvr~~~ 497 (555)
......|...|||... ++.+.. -++-|++-
T Consensus 299 ~~~~~~L~~~GLV~~~--~~~~~~~n~iY~~yF 329 (331)
T PF14516_consen 299 SDDIYKLESLGLVKRD--GNQLEVRNPIYRQYF 329 (331)
T ss_pred hHHHHHHHHCCeEEEe--CCEEEEEcHHHHHHh
Confidence 2457899999999998 566665 55666553
No 22
>PRK06893 DNA replication initiation factor; Validated
Probab=98.95 E-value=1.5e-08 Score=96.14 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=106.0
Q ss_pred CCCCCCCCcccchhhHHHHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
.++...+.|+|-+... .+..+.. ......+.+.|+|++|+|||+|+..+++.+..+.....|+... .. ...
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~----~~---~~~ 81 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS----KS---QYF 81 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH----Hh---hhh
Confidence 3445567788654322 2222221 1122345789999999999999999999876665566666511 00 000
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc--HHHHH-HHhcCCCCC-CCCceE-EEEeCc------
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG--FTQLE-NLVGGSDKF-SPGSRI-IITTRD------ 332 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~--~~~~~-~l~~~~~~~-~~~~~i-liTsR~------ 332 (555)
...+ .+.+. +.-+|+|||++.. ...++ .+...++.. ..+..+ |+|+..
T Consensus 82 ~~~~--------------------~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~ 140 (229)
T PRK06893 82 SPAV--------------------LENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALS 140 (229)
T ss_pred hHHH--------------------Hhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc
Confidence 0011 11111 2359999999751 11222 222212111 134455 455543
Q ss_pred ---hhhhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 333 ---KRVLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 333 ---~~~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
+.+.+.+.....+++++++.++.++++.+.+.... ....+++.+-|++.+.|..-.+..+-..|
T Consensus 141 ~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 141 IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 23444445567899999999999999998885433 22345778889999988887776555433
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=3.9e-08 Score=104.68 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=115.0
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
...+.+||.+..++.|.+++..++ -...+.++|+.|+||||+++.+++.+...... -... -+.......+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~-~~~P--------CG~C~sCr~I 82 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV-TSQP--------CGVCRACREI 82 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC-CCCC--------CcccHHHHHH
Confidence 455679999999999999987432 25677899999999999999999876421100 0000 0000000000
Q ss_pred HHH----Hh--CCccCCCCCchhHHHHHH----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchhhh
Q 043805 268 ISR----VL--GENLKIGTPTIPQNIRKR----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKRVL 336 (555)
Q Consensus 268 l~~----~~--~~~~~~~~~~l~~~l~~~----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~ 336 (555)
... +. ......+.+++.+.+... ..++.-++|||+++. .......|+..+.....++++|++|.+..-+
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 000 00 000001111222222111 123456899999976 2344666766665545678888888765322
Q ss_pred --hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc-hHHHHH
Q 043805 337 --DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP-LALEVL 394 (555)
Q Consensus 337 --~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 394 (555)
........+.+.+++.++..+.|.+.+...+. ....+....|++.++|.. -+|.++
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12234578999999999999999888743322 233567788999998865 355543
No 24
>PTZ00202 tuzin; Provisional
Probab=98.94 E-value=1.2e-07 Score=94.30 Aligned_cols=167 Identities=15% Similarity=0.101 Sum_probs=103.1
Q ss_pred CCCCCCCCcccchhhHHHHHhhhccc-CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCLE-SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
..|+....|+||+.+++.|...|... .+.+++++|+|++|+|||||++.+..... ...++.+.+ +..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHH
Confidence 45778899999999999999999632 23367999999999999999999996654 235554332 45788
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHh-----c-cCceEEEEeCC--CCcHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRL-----Q-RIKVLIVLDDV--HDGFTQLENLVGGSDKFSPGSRIIITTRDKRV 335 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l-----~-~~~~LlVlDdv--~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~ 335 (555)
+..++..++.... ....++...+.+.+ . +++.+||+-== .+......... .+.....-|+|++----+.+
T Consensus 326 Lr~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 326 LRSVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhc
Confidence 8899988885322 22223333333332 2 45566665422 22011111111 11111255777775443322
Q ss_pred hh---hcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 336 LD---KCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 336 ~~---~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.. ..+....|.+++|+.++|.++..+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11 11234568899999999999987765
No 25
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.91 E-value=1.5e-08 Score=99.01 Aligned_cols=221 Identities=19% Similarity=0.256 Sum_probs=123.9
Q ss_pred CCCCCCcccchhhHH---HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIE---EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~---~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|...+.+||.+..+. -|.+++. .+......+|||||+||||||+.++......|... +....-..-
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---------sAv~~gvkd 88 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---------SAVTSGVKD 88 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---------ccccccHHH
Confidence 344556677665552 3444443 34566778999999999999999998776554211 111111122
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEE--EeCchhhh---h
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIII--TTRDKRVL---D 337 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~ili--TsR~~~~~---~ 337 (555)
++.++... -.....+++.+|++|.++. .-.+.+.|++... .|.-++| ||.++... .
T Consensus 89 lr~i~e~a---------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 89 LREIIEEA---------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHHHH---------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHH
Confidence 22332221 1133447899999999964 1456677777764 4544444 56665321 1
Q ss_pred hcCCCeEEEeecCChHHHHHHHHHHhhccCCC-----ChhHHHHHHHHHHHhcCCchHH----HHHHhhhcCC---CHHH
Q 043805 338 KCGVDNIFEVKGLQHSKALELFCRKAFRQNNR-----SHDLLELSQEVVCYADGNPLAL----EVLGSSLHQK---SKQQ 405 (555)
Q Consensus 338 ~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal----~~~a~~l~~~---~~~~ 405 (555)
......++.+++|+.+|..+++.+.+...... ....++....++..++|=-... +++....... ..+.
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~ 230 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILEL 230 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHH
Confidence 12345789999999999999998844221111 1123556778888888865332 2222222222 2333
Q ss_pred HHHHHHhhccC------CCccHHHHHHHhHhcCCHhh
Q 043805 406 WEDKLHNLKLI------SEPSIYKVLKISYDELNSEE 436 (555)
Q Consensus 406 ~~~~l~~l~~~------~~~~l~~~l~~s~~~L~~~~ 436 (555)
..+.+.+-... ..-++...+..|+..=++++
T Consensus 231 l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dA 267 (436)
T COG2256 231 LEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDA 267 (436)
T ss_pred HHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCH
Confidence 44443331111 11245666677776665554
No 26
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.91 E-value=7.7e-09 Score=101.49 Aligned_cols=93 Identities=25% Similarity=0.484 Sum_probs=80.8
Q ss_pred CCCcccEEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCcc--------
Q 043805 14 AQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAA-------- 85 (555)
Q Consensus 14 ~~~~~dvFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~-------- 85 (555)
..+..||||||+..- ....+..|.-.|+-+||+||+|-+++..|. |.+.+.+.|..++.+|+|+||+.++
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 567899999998764 557899999999999999999998898887 7788889999999999999999764
Q ss_pred chhhHHHHHHHHHhHHhcCCEEEEEEe
Q 043805 86 SKWCLNELVKILDCKKINGQIVIPVFY 112 (555)
Q Consensus 86 s~~~~~El~~~~~~~~~~~~~v~pv~~ 112 (555)
-.|...|+..+++++++ |||||-
T Consensus 687 eDWVHKEl~~Afe~~KN----IiPI~D 709 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN----IIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHHhcCC----eeeeec
Confidence 35999999999988755 999993
No 27
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.91 E-value=4e-08 Score=99.40 Aligned_cols=202 Identities=11% Similarity=0.031 Sum_probs=110.1
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC-C-ceEEEEechhhccccChHHHH-
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF-Q-GKCFVADVREESNKMGVIHVR- 264 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~- 264 (555)
...+.++|++..++.|.+++..+ ..+.+.++|++|+|||++|..+++.+.... . ..+++.. ....... ...+.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~-~~~~~~~-~~~~~~ 87 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV-ADFFDQG-KKYLVE 87 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech-hhhhhcc-hhhhhc
Confidence 34467999999999999988633 334688999999999999999998765432 1 1233321 1100000 00000
Q ss_pred -HHHHHHHhCC--ccCCCCCchhHHHHHHh-----ccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCchh-
Q 043805 265 -DEVISRVLGE--NLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDKR- 334 (555)
Q Consensus 265 -~~ll~~~~~~--~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~~- 334 (555)
.......... ......+.+...+.... ...+-+||+||++.. ......+...+......+++|+|+..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 0000000000 00000111111111111 123458999999652 2223333333322235567777775432
Q ss_pred hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 335 VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 335 ~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
+... ......+++.+++.++...++...+...+.. -..+.++.+++.++|++-.+....
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2221 1234678999999999999998876433222 335678899999999876654433
No 28
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.91 E-value=1.5e-08 Score=96.22 Aligned_cols=178 Identities=18% Similarity=0.261 Sum_probs=106.0
Q ss_pred CCCCccc--chhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 189 DLDSFVG--LNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 189 ~~~~fvG--R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
..+.|++ .+..++.+.+++. ....+.+.|+|++|+|||+||..+++.........+++. ...... ....
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~------~~~~ 83 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ------ADPE 83 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH------hHHH
Confidence 3456763 4456777777754 234568999999999999999999987755444445544 111110 0001
Q ss_pred HHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH---HHHHHHhcCCCC-CCCCceEEEEeCchh--------
Q 043805 267 VISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF---TQLENLVGGSDK-FSPGSRIIITTRDKR-------- 334 (555)
Q Consensus 267 ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~l~~~~~~-~~~~~~iliTsR~~~-------- 334 (555)
++ ..+.+ .-+|||||++... ...+.+...+.. ...+..+|+|++...
T Consensus 84 ~~--------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 84 VL--------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred HH--------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 11 11122 2489999996511 112333322211 013347888887432
Q ss_pred -hhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 335 -VLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 335 -~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
+.........+++++++.++...++...+.... ....++..+.|.+.+.|+|..+..+...+
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 112222346789999999999999987653222 22335667888889999998887765543
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1.3e-07 Score=99.28 Aligned_cols=192 Identities=16% Similarity=0.146 Sum_probs=112.7
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC--CCceEEEEechh-hc--cccChHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD--FQGKCFVADVRE-ES--NKMGVIH 262 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~-~~--~~~~~~~ 262 (555)
...+.++|.+...+.|.+++..+. -+..+.++|++|+||||+|+.+++.+... ....|+.+.... .. ...++..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 445678999999999999887432 34567999999999999999999876421 222233210000 00 0000000
Q ss_pred HHHHHHHHHhCCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hh
Q 043805 263 VRDEVISRVLGENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RV 335 (555)
Q Consensus 263 ~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~ 335 (555)
+ ........+.+. .+.+.+ .+++-++|||+++. ....+..|+..+......+.+|+++... .+
T Consensus 90 --------l-~~~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 90 --------I-DAASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred --------e-cccccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 0 000000111111 111211 24566999999965 1345666666665544555666555433 32
Q ss_pred hhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 336 LDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 336 ~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
... ......+++.+++.++..+++...+...+.. ..++.+..|++.++|.+--+.
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 222 2345689999999999999999887433322 235678899999999986553
No 30
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.5e-06 Score=87.47 Aligned_cols=285 Identities=14% Similarity=0.175 Sum_probs=168.1
Q ss_pred CCCCCCCcccchhhHHHHHhhhcc--cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCc--eEEEEechhhccccChH
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCL--ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQG--KCFVADVREESNKMGVI 261 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~ 261 (555)
+...|+.+.+|+.+++++...|.. ....+.-+.|+|++|+|||+.++.+++++....+. .+++.+ .......
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc----~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC----LELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee----eeCCCHH
Confidence 444556699999999999988762 22334458999999999999999999988766443 466663 3345566
Q ss_pred HHHHHHHHHHhCCcc-CCCCCchhHHHHHHhcc--CceEEEEeCCCCc----HHHHHHHhcCCCCCCCCceEEEEeCchh
Q 043805 262 HVRDEVISRVLGENL-KIGTPTIPQNIRKRLQR--IKVLIVLDDVHDG----FTQLENLVGGSDKFSPGSRIIITTRDKR 334 (555)
Q Consensus 262 ~~~~~ll~~~~~~~~-~~~~~~l~~~l~~~l~~--~~~LlVlDdv~~~----~~~~~~l~~~~~~~~~~~~iliTsR~~~ 334 (555)
.++..++..+..... +.....+...+.+.+.. +.+++|||+++.. .+.+-.|...........-+|..+-+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 777788877753322 44555666666666654 6889999999651 1233344443332212223344443332
Q ss_pred h--------hhhcCCCeEEEeecCChHHHHHHHHHHhh---ccCCCChhHHHHHHHHHHHhcCC-chHHHHHHh--hhcC
Q 043805 335 V--------LDKCGVDNIFEVKGLQHSKALELFCRKAF---RQNNRSHDLLELSQEVVCYADGN-PLALEVLGS--SLHQ 400 (555)
Q Consensus 335 ~--------~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~---~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a~--~l~~ 400 (555)
. .+..+. ..+..+|-+.+|-...+..++- ......+..-+++..++...+|- =.||..+-. .+++
T Consensus 168 ~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 168 FLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 2 222222 3478999999999999998873 22333444445555555555553 233333221 1211
Q ss_pred C------CHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhccccCccchh----hhHhhhcCC-c---cHH
Q 043805 401 K------SKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFFNGEYID----FVTRIQDDP-M---SIR 466 (555)
Q Consensus 401 ~------~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~----~l~~~~~~~-~---~~~ 466 (555)
. +.+........ .-.......+..|+..++..+..++....++... ....++... . ...
T Consensus 247 ~~~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~ 319 (366)
T COG1474 247 REGSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFS 319 (366)
T ss_pred hhCCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHH
Confidence 0 11111111111 1123445568889998888887776664344333 223333332 2 556
Q ss_pred HHHHHHHhccceeEec
Q 043805 467 DRLNILIDKSLITISS 482 (555)
Q Consensus 467 ~~l~~L~~~sLl~~~~ 482 (555)
+.+.+|...|++....
T Consensus 320 ~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 320 DIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHHHhcCeEEeee
Confidence 7899999999998654
No 31
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=2.4e-07 Score=93.41 Aligned_cols=198 Identities=10% Similarity=0.076 Sum_probs=114.9
Q ss_pred CCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC--ce-EEE--EechhhccccCh
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ--GK-CFV--ADVREESNKMGV 260 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~-~~~--~~~~~~~~~~~~ 260 (555)
.|.....++|.+...+.|.+.+..+. -+..+.++|+.|+||+++|..+++.+-.+-+ .. +-. ..+. ... .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~---~ 88 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDP---D 88 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCC---C
Confidence 45566789999999999999886432 2567889999999999999999987632211 00 000 0000 000 0
Q ss_pred HHHHHHHHHHHhCC----------c-----cCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCC
Q 043805 261 IHVRDEVISRVLGE----------N-----LKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDK 319 (555)
Q Consensus 261 ~~~~~~ll~~~~~~----------~-----~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~ 319 (555)
....+.+......+ . ..+..+++. .+.+.+ .+++.++|+|+++. +......|+..+..
T Consensus 89 c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 89 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred ChHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 00111111000000 0 011122222 122222 24577999999954 35556666666555
Q ss_pred CCCCceEEEEeCchh-hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 320 FSPGSRIIITTRDKR-VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 320 ~~~~~~iliTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
...++.+|++|.+.. +... ......+.+.+++.++..+++..... ... .+....++..++|+|+....+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---DLP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---cCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 445666777766543 3222 23467899999999999999988651 111 1223678999999998665543
No 32
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.7e-07 Score=95.23 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=111.5
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC---------------------ceE
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ---------------------GKC 246 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~ 246 (555)
...+.++|.+..++.|.+.+..+ .-+..+.++|++|+||||+|+.+++.+..... ...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 44567999999999999988643 23567889999999999999999987642110 011
Q ss_pred EEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCce
Q 043805 247 FVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSR 325 (555)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~ 325 (555)
.+. ...... ....+.++..+.. .-..++.-++|+|+++.. ....+.++..+...+..+.
T Consensus 92 ~~~----~~~~~~-v~~ir~i~~~~~~---------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 92 EID----AASRTK-VEEMREILDNIYY---------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred Eec----ccccCC-HHHHHHHHHHHhc---------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 110 000000 1111111111100 001234569999999762 2245666666655456667
Q ss_pred EEEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 326 IIITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 326 iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
+|++|.+. .+... ......+++.+++.++..+.+...+...+ ....++.+..|+..++|.|..+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 77766543 22222 23457899999999999999988763322 22234667889999999886443
No 33
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.3e-07 Score=99.77 Aligned_cols=193 Identities=14% Similarity=0.090 Sum_probs=113.6
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
...+.++|.+...+.|.+++..+. -...+.++|++|+||||+|+.+++.+-.... .. .. +-+.....+.+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~----~~-pCg~C~sC~~I 81 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT----ST-PCEVCATCKAV 81 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC----CC-CCccCHHHHHH
Confidence 455779999999999999987432 2568899999999999999999987643210 00 00 00000000000
Q ss_pred HHHHhC------CccCCCCCchhHHHHH----HhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchh-h
Q 043805 268 ISRVLG------ENLKIGTPTIPQNIRK----RLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKR-V 335 (555)
Q Consensus 268 l~~~~~------~~~~~~~~~l~~~l~~----~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~-~ 335 (555)
...-.. .......+.+.+.+.. -..++.-++|+|+++. .......|+..+.....++.+|++|.+.. +
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 000000 0000011111111111 1124567999999975 13455666665555456677887776542 2
Q ss_pred h-hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 336 L-DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 336 ~-~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
. ........+++.+++.++..+.+...+...+ .....+.+..|++.++|.+..+.
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 1 1123457899999999999999988874332 22335667889999999875443
No 34
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.86 E-value=9.8e-08 Score=95.78 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=108.2
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
.....++|++..++.|..++..+ ..+.+.|+|++|+|||+++..+++.+........++. +. .+..... ......
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~-~~~~~~ 88 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGI-DVIRNK 88 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccch-HHHHHH
Confidence 34466999999999999998632 2345799999999999999999987643321111221 10 0111111 111122
Q ss_pred HHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCchh-hhh-hcCCCeE
Q 043805 268 ISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDKR-VLD-KCGVDNI 344 (555)
Q Consensus 268 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~-~~~~~~~ 344 (555)
+..+....+ .....+-++++|+++.. ......+...+......+.+|+++.... ... .......
T Consensus 89 i~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 89 IKEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 211111000 00123568999999652 2233344443333345567777664321 111 1123457
Q ss_pred EEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 345 FEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 345 ~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
+++.+++.++...++...+...+. .-.++.+..+++.++|.+.-+..
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 899999999999999888743332 22356788999999999876443
No 35
>PRK04195 replication factor C large subunit; Provisional
Probab=98.81 E-value=1.8e-07 Score=98.81 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=111.4
Q ss_pred CCCCCCcccchhhHHHHHhhhccc--CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLE--SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
|.....++|++...+.|.+|+..- ....+.+.|+|++|+||||+|..+++.+. ++ .+.+. .+. ......+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln----asd-~r~~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN----ASD-QRTADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc----ccc-cccHHHH
Confidence 344567999999999999988631 12267899999999999999999998874 22 11121 111 1111222
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH-----HHHHHHhcCCCCCCCCceEEEEeCchhh--h-
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF-----TQLENLVGGSDKFSPGSRIIITTRDKRV--L- 336 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~-----~~~~~l~~~~~~~~~~~~iliTsR~~~~--~- 336 (555)
..++...... . .....++-+||||+++... ..+..+...+.. ..+.+|+|+.+..- .
T Consensus 82 ~~~i~~~~~~------~-------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 82 ERVAGEAATS------G-------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHHhhcc------C-------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchh
Confidence 3332222111 0 0011357799999996511 234444433332 34456666643211 1
Q ss_pred hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 337 DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 337 ~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
........+++.+++.++....+...+...... ...+....|++.++|....+.....
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq 204 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQ 204 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 112345679999999999999998877433322 2356788999999998766544333
No 36
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2.1e-07 Score=97.90 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=115.5
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
|...+.+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-..-+..- ... ....-+.......
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g~--~~~PCG~C~sC~~ 86 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GGI--TAQPCGQCRACTE 86 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--ccC--CCCCCcccHHHHH
Confidence 3455679999999999999987432 2567789999999999999999987643110000 000 0000000000000
Q ss_pred HHHHH------hCCccCCCCCchhHHHHHH----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-h
Q 043805 267 VISRV------LGENLKIGTPTIPQNIRKR----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-R 334 (555)
Q Consensus 267 ll~~~------~~~~~~~~~~~l~~~l~~~----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~ 334 (555)
+...- .......+.+++.+.+... ..++.-++|||+++. .....+.|+..+.....++.+|++|.+. .
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 00000 0000011222222222211 134566999999965 2456777777776655667766666543 3
Q ss_pred hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 335 VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 335 ~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
+... ......+.+.+++.++..+.+.+.+..... ....+.+..|++.++|.|.-...
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3221 223467899999999999999887643222 22345678899999999964433
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=98.81 E-value=1.2e-07 Score=94.68 Aligned_cols=186 Identities=16% Similarity=0.202 Sum_probs=107.8
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc-CCCceEEEEechhhccccChHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR-DFQGKCFVADVREESNKMGVIHVRD 265 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~ 265 (555)
|...+.++|.++.++.|..++..+ ..+.+.++|++|+||||+|..+++.+.. .+...+. . +. .+...+ ....+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~-e-ln-~sd~~~-~~~vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL-E-LN-ASDDRG-IDVVR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee-e-ec-cccccc-HHHHH
Confidence 344567899999999998887632 3345779999999999999999987633 2322111 1 00 111111 11222
Q ss_pred HHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCch-hhhhh-cCCC
Q 043805 266 EVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDK-RVLDK-CGVD 342 (555)
Q Consensus 266 ~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~-~~~~ 342 (555)
..+......... ...++.-+++||+++.- ......|...+...+..+++++++... .+... ....
T Consensus 83 ~~i~~~~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 83 NKIKMFAQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHHhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 222221110000 00134569999999752 223344443333334556677766432 22111 1234
Q ss_pred eEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 343 NIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 343 ~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
..+++.+++.++....+...+-..+.. -.++....|++.++|..-.+.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 578999999999999998877433222 235668889999999875443
No 38
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=9.2e-08 Score=103.88 Aligned_cols=187 Identities=14% Similarity=0.157 Sum_probs=115.9
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC---ceEEEE---------------
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ---GKCFVA--------------- 249 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~--------------- 249 (555)
.....+||.+..++.|.+++..++ -...+.++|++|+||||+|+.+++.+..... ..|..+
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 455779999999999999886332 2556789999999999999999987643210 001100
Q ss_pred echhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEE
Q 043805 250 DVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIII 328 (555)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~ili 328 (555)
.+. ...... ...++++...+. ..-..++.-++|||+++. .......|+..+......+++|+
T Consensus 92 Eid-Aas~~k-VDdIReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 92 EVD-AASRTK-VDDTRELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred Eec-cccccC-HHHHHHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 000 000000 111122221110 011235667999999965 24567777777765556677766
Q ss_pred EeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 329 TTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 329 TsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
+|.+. .+... ......+++.+|+.++..+++...+.... .....+.+..|+..++|.|.-+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 66543 33222 23457899999999999999988773322 2233567888999999998644433
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=3.8e-07 Score=93.55 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=112.9
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCc---eEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQG---KCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~ 263 (555)
|.....++|.+..+..|..++..+. -...+.++|++|+||||+|+.+++.+...... .|..+ ..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~s---- 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TS---- 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cH----
Confidence 3455779999999999999887432 24568899999999999999999876432110 01000 00
Q ss_pred HHHHHHHHhCC------ccCCCCCchhH---HHHH-HhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043805 264 RDEVISRVLGE------NLKIGTPTIPQ---NIRK-RLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD 332 (555)
Q Consensus 264 ~~~ll~~~~~~------~~~~~~~~l~~---~l~~-~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~ 332 (555)
...+....... ....+.+.+.+ .+.. ...++.-++|+|+++. ..+....|+..+......+.+|++|.+
T Consensus 81 C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence 00000000000 00001111211 1111 1234567999999965 245577777766554456666655554
Q ss_pred -hhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchH
Q 043805 333 -KRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLA 390 (555)
Q Consensus 333 -~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 390 (555)
..+... ......+.+.+++.++..+.+...+...+ .....+.+..|++.++|.+.-
T Consensus 161 ~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 161 FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHH
Confidence 333222 23456799999999999999988774322 223456788999999999843
No 40
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.77 E-value=1.2e-07 Score=90.04 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=101.7
Q ss_pred CCCCCCcc-cchhh-HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHH
Q 043805 187 STDLDSFV-GLNSR-IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fv-GR~~e-l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
+...+.|+ |...+ +..+.++.. .....+.+.|+|++|+|||+||..+++..........++... .. .
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~~------~--- 82 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-SP------L--- 82 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-Hh------H---
Confidence 34456666 54433 344444443 223356789999999999999999998765443344454411 10 0
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCC-CCCc-eEEEEeCchhh------
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKF-SPGS-RIIITTRDKRV------ 335 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~-~~~~-~iliTsR~~~~------ 335 (555)
.. + ... ...-+||+||++.. ......+...+... ..+. .+|+|++....
T Consensus 83 ~~-~--------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 83 LA-F--------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred HH-H--------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCH
Confidence 00 0 011 22347999999641 12222332222111 1232 46666664321
Q ss_pred --hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 336 --LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 336 --~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
.+.+.....+++++++.++-..++.+.+.... ..-.++..+.|++...|++..+..+...+
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11222346899999999988888776542222 22345678889999999999888776654
No 41
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=2.5e-07 Score=98.48 Aligned_cols=196 Identities=13% Similarity=0.074 Sum_probs=112.4
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
|...+.++|.+..++.|.+++..++ -...+.++|++|+||||+|+.+++.+-..... .+..+.. ......
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~pCg~--------C~sCr~ 81 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCGV--------CQSCTQ 81 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCCCcc--------cHHHHH
Confidence 3455779999999999999987432 25678999999999999999999865322100 0000000 000000
Q ss_pred HHHHH------hCCccCCCCCchhHHHHHH----hccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCch-h
Q 043805 267 VISRV------LGENLKIGTPTIPQNIRKR----LQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDK-R 334 (555)
Q Consensus 267 ll~~~------~~~~~~~~~~~l~~~l~~~----l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~-~ 334 (555)
+...- .......+.+.+...+... ..++.-++|||+++.. ......|+..+......+.+|++|.+. .
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 00000 0000011111222221111 1245669999999761 233555655554434566777776543 2
Q ss_pred hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 335 VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 335 ~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
+... .+....+.+.+++.++..+.+.+.+-..+. ....+.+..|++.++|.+.-+..+
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHHHH
Confidence 2111 123456888999999999999988743322 234567889999999998655443
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.76 E-value=1.3e-07 Score=86.47 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=99.3
Q ss_pred CCCCCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHH
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCL---ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIH 262 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 262 (555)
-|...+.|||.+..+..+.-++.. ..+...-+.+|||||+||||||.-+++.....|. +.. ..... ...+
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i~---k~~d 91 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAIE---KAGD 91 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC-----SCHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhhh---hHHH
Confidence 345678899999999988766542 2334667899999999999999999998876642 222 00001 1111
Q ss_pred HHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHH-HHHHHhcCCCCC--------CCC----------
Q 043805 263 VRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFT-QLENLVGGSDKF--------SPG---------- 323 (555)
Q Consensus 263 ~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~-~~~~l~~~~~~~--------~~~---------- 323 (555)
+ ..++ ..+ +++.+|++|+++.-.. +-+.|.+.+... +++
T Consensus 92 l-~~il--------------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 L-AAIL--------------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp H-HHHH--------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred H-HHHH--------------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1 1111 111 2355888899976222 223333322110 111
Q ss_pred -ceEEEEeCchhhhhhcC--CCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhc
Q 043805 324 -SRIIITTRDKRVLDKCG--VDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLH 399 (555)
Q Consensus 324 -~~iliTsR~~~~~~~~~--~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~ 399 (555)
..|=.|||...+...+. ..-..+|+..+.+|-.+++.+.+. ....+..++.+.+|+.++.|-|--..-+-+.++
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~--~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR--ILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCH--CTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHH--HhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 12335677543322221 233458999999999999987662 233455678899999999999976655555444
No 43
>PRK08727 hypothetical protein; Validated
Probab=98.75 E-value=2e-07 Score=88.55 Aligned_cols=172 Identities=12% Similarity=0.128 Sum_probs=100.6
Q ss_pred CCCCcccchhh-HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 189 DLDSFVGLNSR-IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 189 ~~~~fvGR~~e-l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
..++|++.... +..+..... + .....+.|+|++|+|||+|+..+++........+.|+.. .+ ....+...
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~------~~~~~~~~ 87 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA------AAGRLRDA 87 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH------hhhhHHHH
Confidence 45677766643 333333322 1 223569999999999999999999887766555566541 11 00001111
Q ss_pred HHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---HHHHHHHhcCCCC-CCCCceEEEEeCch---------h
Q 043805 268 ISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---FTQLENLVGGSDK-FSPGSRIIITTRDK---------R 334 (555)
Q Consensus 268 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~l~~~~~~-~~~~~~iliTsR~~---------~ 334 (555)
+ +.+ .+.-+|||||++.. ......+...++. ...+..+|+|++.. .
T Consensus 88 ~--------------------~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 88 L--------------------EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred H--------------------HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 1 111 12348999999641 1112222222211 12456799999853 2
Q ss_pred hhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 335 VLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 335 ~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
+.+.......+++++++.++-.+++.+++.... ....++....|++.++|-.-.+.
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHHH
Confidence 223333456899999999999999998764322 23345667788888877665543
No 44
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=4.3e-07 Score=91.09 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=116.3
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC----CceEEEEechhhccccCh
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF----QGKCFVADVREESNKMGV 260 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~ 260 (555)
..|.....++|.+...+.|...+..+. .+..+.|+|+.|+||||+|..+++.+-..- ..... ..+.+-
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-------~~~~~~ 88 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-------ADPDPA 88 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-------CCCCCC
Confidence 356677889999999999999987442 356789999999999999999998765421 10000 000000
Q ss_pred HHHHHHHHHHHh-------C---Cc-----cCCCCCchhHHHHHHhc-----cCceEEEEeCCCC-cHHHHHHHhcCCCC
Q 043805 261 IHVRDEVISRVL-------G---EN-----LKIGTPTIPQNIRKRLQ-----RIKVLIVLDDVHD-GFTQLENLVGGSDK 319 (555)
Q Consensus 261 ~~~~~~ll~~~~-------~---~~-----~~~~~~~l~~~l~~~l~-----~~~~LlVlDdv~~-~~~~~~~l~~~~~~ 319 (555)
....+.+..... . .. ..+..+++. .+.+.+. ++.-++|+|+++. .....+.|+..+..
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 111122211100 0 00 011222222 2333332 3566999999964 24445556655544
Q ss_pred CCCCceEEEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 320 FSPGSRIIITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 320 ~~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
......+|++|..+ .++.. ......+.+.+++.++..+++.+.... .. ...+.+..+++.++|.|.....+.
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--QG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--cC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34455555544433 33222 224568999999999999999885411 11 224557789999999998655443
No 45
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.74 E-value=4.6e-07 Score=86.25 Aligned_cols=176 Identities=14% Similarity=0.199 Sum_probs=101.3
Q ss_pred CCCcc-cch-hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 190 LDSFV-GLN-SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 190 ~~~fv-GR~-~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
.++|+ |-. ..+..+.++.. ....+.+.|+|++|+|||+|+..+++........+.|+. +... . .....
T Consensus 21 fd~f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~---~---~~~~~- 90 (235)
T PRK08084 21 FASFYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR---A---WFVPE- 90 (235)
T ss_pred ccccccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH---h---hhhHH-
Confidence 35565 632 33444444433 223457899999999999999999987765544455554 1110 0 00001
Q ss_pred HHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc--HHHHH-HHhcCCCCC--CCCceEEEEeCch---------
Q 043805 268 ISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG--FTQLE-NLVGGSDKF--SPGSRIIITTRDK--------- 333 (555)
Q Consensus 268 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~--~~~~~-~l~~~~~~~--~~~~~iliTsR~~--------- 333 (555)
+.+.+.. --+|+|||++.. ...++ .+...++.. ..+.++|+||+.+
T Consensus 91 -------------------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 91 -------------------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -------------------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 1111111 138999999541 11221 121111110 1234789998754
Q ss_pred hhhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhh
Q 043805 334 RVLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSS 397 (555)
Q Consensus 334 ~~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~ 397 (555)
.+.+.+.....+++.+++.++-.+++.+.+.... ..-.+++..-|++.+.|..-.+..+-..
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 2333444567899999999999999987663322 2334677888888888887666555443
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.74 E-value=8.6e-07 Score=90.37 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=113.4
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC---------------------Cce
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF---------------------QGK 245 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~ 245 (555)
|.....++|.+..++.|.+++..+. -++.+.++|++|+|||++|..++..+...- ...
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3445678999999999999886432 246788999999999999999998764220 011
Q ss_pred EEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCc
Q 043805 246 CFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGS 324 (555)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~ 324 (555)
.++.. ..... ....+.++..+.. .-..+++-++|+|+++.. ......++..+....+.+
T Consensus 89 ~~~~~----~~~~~-~~~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 89 IEIDA----ASNNG-VDDIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred EEeec----cccCC-HHHHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 11110 00000 1111222221110 001234558999999651 244556665554444566
Q ss_pred eEEEEeCchh-hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 325 RIIITTRDKR-VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 325 ~iliTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
.+|++|.+.. +... ......+++.+++.++..+++...+-..+. ...++.+..+++.++|.|..+.....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 7777765443 2222 223467899999999999999887743322 22356788899999999976655443
No 47
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=8.5e-07 Score=92.42 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=109.9
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC---------------------Cce
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF---------------------QGK 245 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~ 245 (555)
|...+.++|.+...+.|.+.+..+. -+..+.++|++|+||||+|+.+++.+...- ...
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3455779999999888888876332 245688999999999999999998754210 001
Q ss_pred EEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCc
Q 043805 246 CFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGS 324 (555)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~ 324 (555)
..+. .....+. ...+.+...... .-..+++-++|+|+++.. ......|+..+...+..+
T Consensus 89 ~el~----aa~~~gi-d~iR~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 89 IELD----AASNRGI-DEIRKIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred EEEe----CcccCCH-HHHHHHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 1111 0000111 111111111100 011245679999999751 234556665555434455
Q ss_pred eEEEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC-chHHHHHHh
Q 043805 325 RIIITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN-PLALEVLGS 396 (555)
Q Consensus 325 ~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a~ 396 (555)
.+|++|.++ .+... ......+++.+++.++....+...+...+. ...++.+..|++.++|. +.++..+-.
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555555442 22221 234578999999999999999887743222 23356678888888655 566666654
No 48
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=8.2e-07 Score=92.92 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=112.2
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC--c-eEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ--G-KCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~~ 263 (555)
|.....++|-+..++.|...+..+. -++.+.++|++|+||||+|+.+++.+-.... . ..+..+. ....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~--------~C~~ 87 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE--------QCTN 87 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC--------CChH
Confidence 3455678999999999998776332 2467899999999999999999987643210 0 0000000 0000
Q ss_pred HHHHHHHHh------CCccCCCCCchhHHHHHH----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEe-C
Q 043805 264 RDEVISRVL------GENLKIGTPTIPQNIRKR----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITT-R 331 (555)
Q Consensus 264 ~~~ll~~~~------~~~~~~~~~~l~~~l~~~----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTs-R 331 (555)
...+..... ......+.+.+...+... ..+++-++|+|+++. ....+..|+..+....+.+.+|++| +
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 000000000 000011112222211111 124567899999976 2345666766655544666665544 4
Q ss_pred chhhhhhc-CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 332 DKRVLDKC-GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 332 ~~~~~~~~-~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
...+.... .....+++.+++.++..+.+...+...+. ....+.+..|+..++|.+.-+
T Consensus 168 ~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 43333322 34567999999999999999988843322 223566788999999987544
No 49
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.72 E-value=2.6e-08 Score=91.32 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 192 SFVGLNSRIEEMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.|+||+.++++|...+. ......+.+.|+|++|+|||+|+.+++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 233457899999999999999999999988776
No 50
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=7.6e-07 Score=92.43 Aligned_cols=181 Identities=14% Similarity=0.176 Sum_probs=112.7
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC---------------------CCceE
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD---------------------FQGKC 246 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~ 246 (555)
.....+||.+...+.|.+.+..+. -++.+.++|++|+||||+|+.+++.+-.. +...+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 455779999999999998886432 25578999999999999999998754221 11112
Q ss_pred EEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCce
Q 043805 247 FVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSR 325 (555)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~ 325 (555)
.+. .....+. +..+.++..... .-..++.-++|+|+++. .....+.|+..+....+.+.
T Consensus 89 eid----aas~~~v-ddIR~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 89 EID----AASNTSV-DDIKVILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEe----cccCCCH-HHHHHHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 221 0011111 112222211110 00123556899999965 23456667666665556777
Q ss_pred EEEEeCch-hhhh-hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 326 IIITTRDK-RVLD-KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 326 iliTsR~~-~~~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
+|++|.+. .+.. .......+++.+++.++..+.+...+...+. ...++.+..|++.++|.+..+
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 77666443 3322 2234578999999999999999988743322 233566788999999988644
No 51
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=2.7e-07 Score=98.57 Aligned_cols=193 Identities=14% Similarity=0.084 Sum_probs=113.3
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
.....+||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..... . ..+-+.......+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATPCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCCCCCCHHHHHH
Confidence 456779999999999999887432 24567899999999999999999876432100 0 0000000001111
Q ss_pred HHHHh------CCccCCCCCchhHHHHH----HhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hh
Q 043805 268 ISRVL------GENLKIGTPTIPQNIRK----RLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RV 335 (555)
Q Consensus 268 l~~~~------~~~~~~~~~~l~~~l~~----~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~ 335 (555)
...-. ........+.+...+.. -..++.-++|||+++. .....+.|+..+......+++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 00000 00000111122211111 1234567999999965 2456677776666555666666665543 33
Q ss_pred hh-hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 336 LD-KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 336 ~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
.. .......+.+.+|+.++..+.+...+.... .....+....|+..++|.+.-..
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22 223457899999999999999988763222 22234567789999999886443
No 52
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.1e-06 Score=93.74 Aligned_cols=200 Identities=15% Similarity=0.162 Sum_probs=114.2
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
...+.+||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-..-+... ... ...+-+.......+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~--~~~--~~~pCg~C~~C~~i 87 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ--GGI--TATPCGVCQACRDI 87 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--cCC--CCCCCCccHHHHHH
Confidence 45577999999999999998743 23567889999999999999999886542110000 000 00000000001111
Q ss_pred HHHH------hCCccCCCCCchhHHHHHH----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc-hhh
Q 043805 268 ISRV------LGENLKIGTPTIPQNIRKR----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD-KRV 335 (555)
Q Consensus 268 l~~~------~~~~~~~~~~~l~~~l~~~----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~-~~~ 335 (555)
...- .......+.+.+.+.+... ..++.-++|||+++. .......|+..+......+.+|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0000 0000001112222222111 123445899999975 244566777766655566677666543 222
Q ss_pred h-hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 336 L-DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 336 ~-~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
. ........+++.+++.++..+.+...+...+. ....+.+..|++.++|.+.-+..+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 22334678999999999999999887743322 223566788999999987555443
No 53
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=7.9e-08 Score=82.74 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=73.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC-----CCceEEEEechhhccccChHHHHHHHHHHHhCCccC-CCCCchhHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD-----FQGKCFVADVREESNKMGVIHVRDEVISRVLGENLK-IGTPTIPQNI 287 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~l~~~l 287 (555)
.+.+.|+|++|+|||+++.++++..... -...+|+. .........+...++..+...... .....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4689999999999999999999876542 23445555 233336777888888888766554 4455666777
Q ss_pred HHHhccCce-EEEEeCCCCc--HHHHHHHhcCCCCCCCCceEEEEeCc
Q 043805 288 RKRLQRIKV-LIVLDDVHDG--FTQLENLVGGSDKFSPGSRIIITTRD 332 (555)
Q Consensus 288 ~~~l~~~~~-LlVlDdv~~~--~~~~~~l~~~~~~~~~~~~iliTsR~ 332 (555)
.+.+...+. +||+|+++.. ...++.+....+ ..+..+|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777776655 9999999761 233444433333 477888888765
No 54
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=5.9e-07 Score=91.40 Aligned_cols=173 Identities=14% Similarity=0.137 Sum_probs=106.5
Q ss_pred CCcccchhhHHHHHhhhcccCC--------CeEEEEEEecCcchhHHHHHHHHHhhhcCC--------------------
Q 043805 191 DSFVGLNSRIEEMKSLMCLESH--------DVRIVGIWGMGGVGKTTIASVVFHQISRDF-------------------- 242 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-------------------- 242 (555)
+.++|.+..++.|.+.+..+.. -+..+.++|++|+|||++|..++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4588999999999998874321 356789999999999999999998653321
Q ss_pred CceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcC
Q 043805 243 QGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGG 316 (555)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~ 316 (555)
+...++.. .. ..+..+++.. +.+.+ .+++-++++|+++. .......|+..
T Consensus 85 pD~~~i~~----~~-------------------~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PDVRVVAP----EG-------------------LSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCEEEecc----cc-------------------ccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 11111110 00 0011111211 11211 23455888999965 13344556665
Q ss_pred CCCCCCCceEEEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 317 SDKFSPGSRIIITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 317 ~~~~~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
+....++..+|++|.+. .+.+. ......+.+.+++.++..+.+.... . .. .+.+..++..++|.|.....+
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~-~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---G-VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---C-CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 55444566666666554 33322 2345789999999999999887543 1 11 345778999999999654433
No 55
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=7.6e-07 Score=93.78 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=111.7
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC---------------------CceE
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF---------------------QGKC 246 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~ 246 (555)
.....++|.+..++.|...+..+ .....+.++|++|+||||+|+.+++.+.... ...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 45567999999999999988643 2356688999999999999999998654211 1111
Q ss_pred EEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHH-HhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCc
Q 043805 247 FVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRK-RLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGS 324 (555)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~-~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~ 324 (555)
.+. .....++ ...+.++. .+.. -..+++-++|+|+++. .....+.|+..+......+
T Consensus 92 eid----aas~~gv-d~ir~ii~----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 92 EID----AASRTGV-EETKEILD----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred Eee----cccccCH-HHHHHHHH----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 111 0000011 01111111 1111 1234567999999965 2345666766665544566
Q ss_pred eEEEEeCc-hhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch-HHHHH
Q 043805 325 RIIITTRD-KRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL-ALEVL 394 (555)
Q Consensus 325 ~iliTsR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 394 (555)
.+|++|.+ ..+... ......+++.+++.++..+.+...+...+ ....++.+..|++.++|.+. ++..+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66655543 333322 23457899999999999999888663322 22345667889999999775 44333
No 56
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.8e-06 Score=95.49 Aligned_cols=188 Identities=11% Similarity=0.070 Sum_probs=111.7
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC---ceEEEEechhhccccChHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ---GKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~ 264 (555)
.....+||.+..++.|.+.+..+. -...++++|+.|+||||+|+.+++.+..... ..|-.+ .-.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C------------~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC------------DSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc------------HHH
Confidence 445679999999999999987432 2457889999999999999999987642110 000000 000
Q ss_pred HHHHHHH--------hCCccCCCCCchhHHHHH-----HhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEe
Q 043805 265 DEVISRV--------LGENLKIGTPTIPQNIRK-----RLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 265 ~~ll~~~--------~~~~~~~~~~~l~~~l~~-----~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
+.+.... .........+++.. +++ -..++.-++|||+++. .....+.|+..+......+.+|++|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 0000000 00000011122221 111 1234556899999965 2345566766666555677766666
Q ss_pred Cch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 331 RDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 331 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
.+. .+... ......+++.+++.++..+++.+.+-..+. ....+.+..|+..++|.+..+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 443 33332 235678999999999999999887633222 223456778999999988433
No 57
>PRK05642 DNA replication initiation factor; Validated
Probab=98.65 E-value=1.1e-06 Score=83.67 Aligned_cols=155 Identities=18% Similarity=0.279 Sum_probs=92.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
.+.+.|+|++|+|||+|+..+++.+......++|+.. .. +... ...+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~---------~~~~-----------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AE---------LLDR-----------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HH---------HHhh-----------------hHHHHHhhhh
Confidence 3578999999999999999999877655445666551 11 1100 0112233333
Q ss_pred CceEEEEeCCCCc--HHHH-HHHhcCCCC-CCCCceEEEEeCchh---------hhhhcCCCeEEEeecCChHHHHHHHH
Q 043805 294 IKVLIVLDDVHDG--FTQL-ENLVGGSDK-FSPGSRIIITTRDKR---------VLDKCGVDNIFEVKGLQHSKALELFC 360 (555)
Q Consensus 294 ~~~LlVlDdv~~~--~~~~-~~l~~~~~~-~~~~~~iliTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~Ll~ 360 (555)
-. +||+||++.. ...+ +.+...++. ...|..+|+|++... +.+.+.....+++.+++.++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 6889999531 1122 223322221 124567888887532 12222345678999999999999998
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 361 RKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
..+.... ..-.+++.+-|++.+.|..-.+..+-..|
T Consensus 177 ~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6653322 22335777888888888776665554433
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1e-06 Score=92.81 Aligned_cols=183 Identities=14% Similarity=0.084 Sum_probs=111.9
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC---------------------CCceE
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD---------------------FQGKC 246 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~ 246 (555)
...+.+||-+..++.|.+++..+. -+..+.++|++|+||||+|+.+++.+-.. ++..+
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 455779999999999999996432 25578899999999999999999866321 11111
Q ss_pred EEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCce
Q 043805 247 FVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSR 325 (555)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~ 325 (555)
.+. .....++. ..++++..+.. .-..++.-++|+|+++. .......|+..+....+.+.
T Consensus 92 eid----aas~~~v~-~iR~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 92 EVD----AASRTKVE-DTRELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEc----ccccCCHH-HHHHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 111 00011111 11222211110 01123456899999975 23456667666655556777
Q ss_pred EEEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 326 IIITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 326 iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
+|++|.+. .+... ......+++.+++.++....+...+-..+.. ...+.+..|++.++|.+.-+..
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 77666543 22211 2234678999999999998888776433222 2345678899999998865433
No 59
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=1.4e-07 Score=80.76 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=72.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRI 294 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~ 294 (555)
++++|+|+.|+|||||+.++++... .....+++. +..... .. . . ..+ +.+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~----~~----~----~------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD----RR----L----A------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH----HH----H----h------hhh-hHHHHHHhhccC
Confidence 6899999999999999999998765 223344443 111100 00 0 0 000 222333333347
Q ss_pred ceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhc------CCCeEEEeecCChHH
Q 043805 295 KVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKC------GVDNIFEVKGLQHSK 354 (555)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~------~~~~~~~l~~L~~~e 354 (555)
+.+|+||++.. ...|...+..+....+.++|++|+......... +....+++.||+..|
T Consensus 62 ~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 78999999977 555655555444444678999999876554321 233568999999877
No 60
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=1.9e-06 Score=92.20 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=116.0
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCce----EEEEechhhccccChHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGK----CFVADVREESNKMGVIH 262 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~----~~~~~~~~~~~~~~~~~ 262 (555)
|.....++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-...... .+-.+ +...
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c--------g~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC--------GVGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC--------cccH
Confidence 3455779999999999999987432 255788999999999999999998764322100 00000 0000
Q ss_pred HHHHHHHHHhCC------ccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEe
Q 043805 263 VRDEVISRVLGE------NLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 263 ~~~~ll~~~~~~------~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
....+......+ ....+.+++.+. .+.+ ..++-++|+|+++. .....+.|+..+....+++.+|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReI-ie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREI-IESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHH-HHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 011111100000 001122222221 1222 23456899999965 1344666666665545667776655
Q ss_pred C-chhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 331 R-DKRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 331 R-~~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
. ...+... ......+++.+++.++....+.+.+..... ....+.+..|+..++|.+.-+....
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 3333222 234568999999999999999888743322 2234678899999999987654443
No 61
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.5e-06 Score=89.42 Aligned_cols=200 Identities=12% Similarity=0.103 Sum_probs=112.2
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC--CCceEEEEechhhccccChHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD--FQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
|.....++|.+...+.|.+++..+. -+..+.++|++|+||||+|..+++.+... +...-|.... ..+-+.....
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHH
Confidence 3456789999999999999886432 24568899999999999999999876432 1000000000 0000000000
Q ss_pred HHHHHHHhC------CccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEe-C
Q 043805 265 DEVISRVLG------ENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITT-R 331 (555)
Q Consensus 265 ~~ll~~~~~------~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTs-R 331 (555)
+.+...... .......+++.+ +.+.+ .+.+-++|+|+++. ....++.++..+....+.+.+|+++ +
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111100000 000011122222 22222 23456899999965 1335566666555444566666555 3
Q ss_pred chhhhhhc-CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 332 DKRVLDKC-GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 332 ~~~~~~~~-~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
...+.... .....+++.+++.++..+.+...+.... ....++.+..|+..++|.+--+..
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33332221 2235688999999999999988763222 223456788999999998865444
No 62
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.7e-06 Score=86.28 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=111.7
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-----CCceEEEEechhhccccChHHHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-----FQGKCFVADVREESNKMGVIHVRD 265 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~ 265 (555)
...+|.+...+.|.+.+..+ .-+....++|+.|+|||++|..+++.+-.. ++....+... ...... ....+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~-v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIG-VDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCC-HHHHH
Confidence 45789899999999988633 235688899999999999999999875322 2222222210 001111 11122
Q ss_pred HHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchhhh-hh-cCCC
Q 043805 266 EVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKRVL-DK-CGVD 342 (555)
Q Consensus 266 ~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~~-~~~~ 342 (555)
++...+.. .-..+++-++|+|+++. .......|+..+...++++.+|++|.+...+ +. ....
T Consensus 80 ~~~~~~~~---------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 80 NIIEEVNK---------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHHHHhc---------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 22222211 01123456788888743 2556777887777666788888888765332 21 2345
Q ss_pred eEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 343 NIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 343 ~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
..+++.+++.++....+.+... . ...+.+..++..++|.|.-+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~---~---~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYN---D---IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhc---C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 7899999999999998877641 1 1134467889999999865543
No 63
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.8e-06 Score=91.06 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=108.5
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
|.....++|++..++.|.+.+..+ .-++.+.++|++|+||||+|..+++.+...-....- .+ +-....+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~-~C--------g~C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD-CC--------NSCSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-CC--------cccHHHHH
Confidence 345577999999999999988633 235678899999999999999999876432100000 00 00000011
Q ss_pred HHHHHhCC------ccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-
Q 043805 267 VISRVLGE------NLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK- 333 (555)
Q Consensus 267 ll~~~~~~------~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~- 333 (555)
+......+ ....+.+.+.. +.+.+ ..++-++|+|+++. .......|+..+...+..+.+|++|...
T Consensus 82 i~~~~h~DiieIdaas~igVd~IRe-Ii~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRN-IIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHH-HHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 10000000 00011111111 11111 12344799999965 1344556665554434555665555433
Q ss_pred hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 334 RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 334 ~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
.+... ......+++.+++.++....+...+...+. ....+.+..++..++|.+.-+
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHH
Confidence 33222 234568999999999999999887743221 123456788999999977533
No 64
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.59 E-value=2.9e-06 Score=92.71 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=102.5
Q ss_pred CCCCCCcccchhhHH---HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIE---EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~---~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|...+.|+|++..+. .|.+.+.. +....+.|+|++|+||||||+.+++.....| ..+.. . ..+.. .
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f---~~lna---~--~~~i~-d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHF---SSLNA---V--LAGVK-D 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcc---eeehh---h--hhhhH-H
Confidence 345567999999885 56666653 3345678999999999999999998765443 11110 0 00110 1
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHh--ccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEE--EeCchh--hh
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRL--QRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIII--TTRDKR--VL 336 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l--~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~ili--TsR~~~--~~ 336 (555)
.+..+.. ..+.+ .+++.+|+|||++.- ....+.|++.+. .+..++| ||.++. +.
T Consensus 93 ir~~i~~----------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 93 LRAEVDR----------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred HHHHHHH----------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111111 11111 135679999999641 344555665443 3333444 333331 11
Q ss_pred h-hcCCCeEEEeecCChHHHHHHHHHHhhc-----cCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 337 D-KCGVDNIFEVKGLQHSKALELFCRKAFR-----QNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 337 ~-~~~~~~~~~l~~L~~~ea~~Ll~~~~~~-----~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
. .......+.+++|+.++...++...+.. ........++....|++.+.|+.--+.
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 1 1123457899999999999999887631 011223345677889999999865443
No 65
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.59 E-value=1.9e-06 Score=80.94 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=92.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC--ceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ--GKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
...+.|+|+.|+|||.|+..+++.+....+ .++++. ...+...+...+.. . -...+.+.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~-------~-~~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD-------G-EIEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT-------T-SHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc-------c-cchhhhhhh
Confidence 456889999999999999999998765433 344443 12223333333322 1 112233444
Q ss_pred ccCceEEEEeCCCCc--HHH-HHHHhcCCCCC-CCCceEEEEeCch---------hhhhhcCCCeEEEeecCChHHHHHH
Q 043805 292 QRIKVLIVLDDVHDG--FTQ-LENLVGGSDKF-SPGSRIIITTRDK---------RVLDKCGVDNIFEVKGLQHSKALEL 358 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~--~~~-~~~l~~~~~~~-~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 358 (555)
+ .-=+|+|||++.. ... .+.+...++.. ..|.++|+|+... .+.+.+.....++|.+++.++-.++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 3348999999651 111 12222211110 1466899999653 2223334667899999999999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 359 FCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
+.+.+...... -.+++++-|++.+.+..-.|..+-.
T Consensus 175 l~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 175 LQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99988443322 4467778888887777766655443
No 66
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.59 E-value=1.8e-06 Score=79.40 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=94.2
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC---------------------CCceEEEEechhhccccCh
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD---------------------FQGKCFVADVREESNKMGV 260 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 260 (555)
.|.+.+..+ .-+..+.++|+.|+|||++|..++..+-.. ++...++... .... -
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~-~ 77 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSI-K 77 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcC-C
Confidence 344444322 224678999999999999999999876432 1111222100 0000 0
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhh
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDK 338 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~ 338 (555)
.+..++++..+... -..+.+-++|+||++. .....+.|+..+....+.+.+|+++++. .+...
T Consensus 78 ~~~i~~i~~~~~~~---------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 78 VDQVRELVEFLSRT---------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred HHHHHHHHHHHccC---------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 11111222111100 0124566899999965 1334566666665545667777777654 22221
Q ss_pred -cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch
Q 043805 339 -CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL 389 (555)
Q Consensus 339 -~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 389 (555)
......+++.+++.++..+.+.+.. - .++.+..|++.++|.|.
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~g-----i---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQG-----I---SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHcC-----C---CHHHHHHHHHHcCCCcc
Confidence 1245689999999999999998861 1 24668899999999985
No 67
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.58 E-value=8.6e-06 Score=84.80 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=100.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC--ceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ--GKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
...+.|+|+.|+|||+|+..+++.+....+ .++++. ...+...+...+.... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh------hHHHHHHHHh
Confidence 456889999999999999999987654322 333433 1233333333332110 1112233333
Q ss_pred ccCceEEEEeCCCCc---HHHHHHHhcCCCCC-CCCceEEEEeCch---------hhhhhcCCCeEEEeecCChHHHHHH
Q 043805 292 QRIKVLIVLDDVHDG---FTQLENLVGGSDKF-SPGSRIIITTRDK---------RVLDKCGVDNIFEVKGLQHSKALEL 358 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~---~~~~~~l~~~~~~~-~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 358 (555)
. ..-+|||||+... ....+.+...++.. ..+..||+|+... .+.+.+..+-.+.+.+++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 3 3448899999541 12223332222111 1344688887543 2223334556789999999999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 359 FCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
+.+.+-..+....-.++++..|++.+.|.|-.+.-+...+
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9988743222113446788999999999998887665433
No 68
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=6e-06 Score=87.90 Aligned_cols=189 Identities=16% Similarity=0.123 Sum_probs=110.4
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
...+.++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.++..+-...... .-.+ +.......+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~pC--------g~C~~C~~i 79 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATPC--------GVCESCVAL 79 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCcc--------cccHHHHHh
Confidence 445679999999999999987432 355678999999999999999998754211000 0000 000000000
Q ss_pred HHHHhC--------CccCCCCCchhHHHHHH-----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc-
Q 043805 268 ISRVLG--------ENLKIGTPTIPQNIRKR-----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD- 332 (555)
Q Consensus 268 l~~~~~--------~~~~~~~~~l~~~l~~~-----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~- 332 (555)
...... .....+.+.+.+ +.+. ..++.-++|+|+++. .....+.|+..+......+.+|++|.+
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRe-l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRE-LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHH-HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 000000 000001111111 1111 124556899999964 245566676666655566666665544
Q ss_pred hhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch
Q 043805 333 KRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL 389 (555)
Q Consensus 333 ~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 389 (555)
..+... ......+++.+++.++..+.+...+...+. ....+.+..|+..++|.+.
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 333322 234578999999999999999887743322 2234567888999999885
No 69
>PRK09087 hypothetical protein; Validated
Probab=98.56 E-value=6.7e-07 Score=84.30 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=89.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
.+.+.|+|++|+|||+|++.++.... ..++.. ..+....+. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~--------------------~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAAN--------------------AAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHH--------------------hhhc
Confidence 45689999999999999998886532 224330 000111111 1111
Q ss_pred CceEEEEeCCCCc---HHHHHHHhcCCCCCCCCceEEEEeCch---------hhhhhcCCCeEEEeecCChHHHHHHHHH
Q 043805 294 IKVLIVLDDVHDG---FTQLENLVGGSDKFSPGSRIIITTRDK---------RVLDKCGVDNIFEVKGLQHSKALELFCR 361 (555)
Q Consensus 294 ~~~LlVlDdv~~~---~~~~~~l~~~~~~~~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Ll~~ 361 (555)
-+|++||++.. ...+-.+..... ..|..+|+|++.. ...+.+.....+++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999541 222333332222 1466789988742 3334445667899999999999999998
Q ss_pred HhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 362 KAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
.+... ...-.+++.+-|++.+.|..-.+..+...|
T Consensus 165 ~~~~~--~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 165 LFADR--QLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHc--CCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 87432 223346778888888888887776544433
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=5.3e-06 Score=84.87 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=109.5
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC--------CCceEEEEechhhcccc
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD--------FQGKCFVADVREESNKM 258 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 258 (555)
|...+.++|.+...+.+.+.+..+ .-++.+.++|++|+|||++|..+++.+... +...++- +.. ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-ASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-ccCC
Confidence 345577899999999999998643 235688899999999999999998876432 1111111 100 0001
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc-hhhh
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD-KRVL 336 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~-~~~~ 336 (555)
. ......++..+... -..+++-++++|+++. ....+..++..+......+.+|+++.. ....
T Consensus 89 ~-~~~i~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 89 S-VDDIRNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred C-HHHHHHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 1 11122222211100 0113456899999964 133455565444333345555555533 2222
Q ss_pred hh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 337 DK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 337 ~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
.. ......+++.+++.++....+...+...+. .-.++.+..++..++|.+-.+..
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHH
Confidence 21 223467899999999999999887743322 22356788899999998764433
No 71
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.55 E-value=8.3e-07 Score=77.61 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=41.1
Q ss_pred ccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 194 VGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 194 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+||+..+..+...+... ..+.+.|+|++|+|||+|++++++.+.......+++.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 47888999998887632 3467899999999999999999988754333444443
No 72
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.8e-06 Score=90.68 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=113.1
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
...+.++|.+..++.|..++..+. -...+.++|+.|+|||++|+.+++.+.......-+-. -+.....+.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~--------c~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP--------CGTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------CccCHHHHHH
Confidence 445679999999999998886432 3466789999999999999999987642211000000 0000111111
Q ss_pred HHHHhCCc------cCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-h
Q 043805 268 ISRVLGEN------LKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-R 334 (555)
Q Consensus 268 l~~~~~~~------~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~ 334 (555)
......+. .....+.+.+ +.+.+ ...+-++|+|+++. ..+..+.|+..+......+.+|+++.+. .
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 11000000 0011111111 11211 13456899999964 1345666666555444566666665432 2
Q ss_pred hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 335 VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 335 ~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
+... ......+++.+++..+....+...+...+.. ...+.+..|+..++|.+..+.....
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3221 2234678899999999999998876433222 2356788999999999976554433
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.54 E-value=4.5e-07 Score=92.43 Aligned_cols=177 Identities=20% Similarity=0.259 Sum_probs=100.8
Q ss_pred CCCCCcccchhhHHHHHhhhccc--C---------CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLE--S---------HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~--~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
...+.+.|++..+++|.+.+... . ..++-+.|+|++|+|||+||+.+++.....| +...
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~----- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVV----- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecc-----
Confidence 34457899999999998866411 1 2255689999999999999999998775443 1100
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------H---HHHHHHhcCCCC--
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------F---TQLENLVGGSDK-- 319 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~---~~~~~l~~~~~~-- 319 (555)
...+..... +. ....+...+...-...+.+|+||+++.. . ..+..++..+..
T Consensus 189 ---~~~l~~~~~----g~----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 ---GSELVRKYI----GE----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---hHHHHHHhh----hH----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 001111110 00 0001111222222346789999999651 0 112233322221
Q ss_pred CCCCceEEEEeCchhh-----hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 320 FSPGSRIIITTRDKRV-----LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 320 ~~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
...+..||.||..... .........+.++..+.++..++|..+......... -....++..+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 1246778888875422 211123567899999999999999887743322211 11456777777764
No 74
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.53 E-value=3.4e-06 Score=78.93 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=149.9
Q ss_pred CCCCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCL---ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|.....|+|.+...+.|.=.+.. ..+..--+.++||||.||||||.-+++.+...+. +........+.+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~gD---- 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPGD---- 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChhh----
Confidence 45567899999888888766652 2334567899999999999999999998865421 110000011111
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHh-cCCCCC--------CCC-----------
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLV-GGSDKF--------SPG----------- 323 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~-~~~~~~--------~~~----------- 323 (555)
+..++.. |. ..=+|++|.++.....++.++ +.+..+ +++
T Consensus 94 laaiLt~--------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 94 LAAILTN--------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred HHHHHhc--------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 1111111 11 223677788865333333332 222111 122
Q ss_pred ceEEEEeCchhhhhhc--CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCC
Q 043805 324 SRIIITTRDKRVLDKC--GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQK 401 (555)
Q Consensus 324 ~~iliTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~ 401 (555)
..|=.|||...+...+ ...-+.+++-.+.+|-.+.+.+.+. ....+..++.+.+|+++..|-|.-..-+-+..++
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~--~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD- 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK--ILGIEIDEEAALEIARRSRGTPRIANRLLRRVRD- 229 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHH--HhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHH-
Confidence 1244677754332221 2345678999999999999988762 2223334567899999999999755444433322
Q ss_pred CHHHHHHHHHhhccCCCc----cHHHHHHHhHhcCCHhhHHHHhhhcccc--CccchhhhHhhhcCC-ccHHHHHH-HHH
Q 043805 402 SKQQWEDKLHNLKLISEP----SIYKVLKISYDELNSEEKEIFLDIACFF--NGEYIDFVTRIQDDP-MSIRDRLN-ILI 473 (555)
Q Consensus 402 ~~~~~~~~l~~l~~~~~~----~l~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~~~~~~-~~~~~~l~-~L~ 473 (555)
+..+...- .... .....+..-=..|+.-.++.|..+.-.. ++...+.++..++.+ ...++.++ -|+
T Consensus 230 ----fa~V~~~~--~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLi 303 (332)
T COG2255 230 ----FAQVKGDG--DIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLI 303 (332)
T ss_pred ----HHHHhcCC--cccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHH
Confidence 11110000 0001 1111222222346666777777666443 568889999888887 66776665 488
Q ss_pred hccceeEeccCCE
Q 043805 474 DKSLITISSYGNR 486 (555)
Q Consensus 474 ~~sLl~~~~~~~~ 486 (555)
+.|+++... .|+
T Consensus 304 q~gfi~RTp-RGR 315 (332)
T COG2255 304 QQGFIQRTP-RGR 315 (332)
T ss_pred HhchhhhCC-Ccc
Confidence 999999886 444
No 75
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=5.2e-06 Score=88.13 Aligned_cols=198 Identities=12% Similarity=0.110 Sum_probs=113.3
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
...+.++|.+...+.|.+.+..+ .-...+.++|++|+||||+|..+++.+-...... ...-+.....+.+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~C~sC~~i 82 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNTCEQCRKV 82 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcccHHHHHH
Confidence 44567899999999999988633 2256788999999999999999998764311000 0000000000000
Q ss_pred HHHHhCC------ccCCCCCchhHHHHHH-----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc-hh
Q 043805 268 ISRVLGE------NLKIGTPTIPQNIRKR-----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD-KR 334 (555)
Q Consensus 268 l~~~~~~------~~~~~~~~l~~~l~~~-----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~-~~ 334 (555)
......+ ......+.+. .+.+. ..++.-++|+|+++. .......|+..+........+|++|.+ ..
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred hcCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 0000000 0000011111 11111 234567999999965 234566676666544455666665554 33
Q ss_pred hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc-hHHHHHHhhh
Q 043805 335 VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP-LALEVLGSSL 398 (555)
Q Consensus 335 ~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~a~~l 398 (555)
+... ......+++.+++.++....+...+..... ....+.+..|++.++|.+ .++..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 223467899999999999999887643322 223567888999999976 5666665433
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=7.9e-06 Score=87.63 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=112.1
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC--CceEEEEechhhccccChHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF--QGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
|.....++|.+..++.|.+.+..+ .-...+.++|++|+||||+|..+++.+-..- ....|...... +-+.....
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHH
Confidence 345577999999999999988633 2245688999999999999999998764321 10111110000 00000001
Q ss_pred HHHHHHHhCC------ccCCCCCchhHHHHHH----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc-
Q 043805 265 DEVISRVLGE------NLKIGTPTIPQNIRKR----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD- 332 (555)
Q Consensus 265 ~~ll~~~~~~------~~~~~~~~l~~~l~~~----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~- 332 (555)
+.+....... ......+++....... ..+.+-++|+||++. .....+.|+..+....+.+.+|++|.+
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 1110000000 0001122232222111 123456899999965 134466666666554455565555533
Q ss_pred hhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 333 KRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 333 ~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
..+... ......+++.+++.++....+...+...+. ....+.+..|+..++|..--+
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHH
Confidence 333322 335678999999999999999877632221 223567889999999976533
No 77
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=7.9e-06 Score=85.67 Aligned_cols=195 Identities=14% Similarity=0.093 Sum_probs=110.9
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-----CCceEEEEechhhcc--ccC
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-----FQGKCFVADVREESN--KMG 259 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~--~~~ 259 (555)
|.....++|.+...+.|.+++..+. -.....++|++|+||||+|+.++..+... .++..-.. ...... ..+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n-c~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN-CVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH-HHHHhcCCCCc
Confidence 3445678999999999999987432 35567899999999999999999876421 01110000 000000 000
Q ss_pred hHHHHHHHHHHHhCCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCc-
Q 043805 260 VIHVRDEVISRVLGENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRD- 332 (555)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~- 332 (555)
+.. .......+.+.+ +.+.+.. .+++-++|+|+++.. ....+.|+..+....+...+|++|.+
T Consensus 90 ~~e---------idaas~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 90 LIE---------IDAASNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred EEE---------EeCccCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 000 000000011111 1122222 245669999999651 33455666555544455555555533
Q ss_pred hhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 333 KRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 333 ~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
..+... ......+.+.+++.++....+...+-..+. ....+.+..|++.++|.+..+....
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 332221 234567899999999999999887743222 2335667889999999886554443
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.52 E-value=1.5e-06 Score=96.35 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-C-----CceEEEEechhhccccCh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-F-----QGKCFVADVREESNKMGV 260 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~ 260 (555)
|...+.++||+.+++.+.+.|... ...-+.++|++|+|||++|..+++++... . ...+|..+..........
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~ 255 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKY 255 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccc
Confidence 345567999999999999988643 23456799999999999999999987442 1 233443322111100000
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc----------HHHHHHHhcCCCCCCCCceEEEEe
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG----------FTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
..-+. ..+...+.+.-...+++|++|+++.. .+..+.+.+.+.. ...++|-+|
T Consensus 256 ~g~~e---------------~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaT 318 (731)
T TIGR02639 256 RGDFE---------------ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGST 318 (731)
T ss_pred cchHH---------------HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEec
Confidence 00000 11111121222345899999999641 1122334444432 234555544
Q ss_pred Cchhhh-------hhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 331 RDKRVL-------DKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 331 R~~~~~-------~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.....- ........+++++++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 432110 011234679999999999999998654
No 79
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.3e-06 Score=90.73 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=108.3
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC---------------------ceE
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ---------------------GKC 246 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~ 246 (555)
.....++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+-.... ..+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 445679999999999999887432 2456789999999999999999987632210 111
Q ss_pred EEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCce
Q 043805 247 FVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSR 325 (555)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~ 325 (555)
.+. ...... ....+.++..... .-..+++-++|+|+++. .......|+..+......+.
T Consensus 92 ei~----~~~~~~-vd~ir~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 92 EVD----AASNTQ-VDAMRELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred Eee----ccccCC-HHHHHHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 110 000000 1111111111100 00124566999999975 13345666666655445666
Q ss_pred EEEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch
Q 043805 326 IIITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL 389 (555)
Q Consensus 326 iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 389 (555)
+|++|.+. .+... ......+++.+++.++..+.+...+...+. ...++.+..|++.++|.+.
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 66665443 22211 123467899999999999999887633222 2234567889999999885
No 80
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.49 E-value=2.3e-05 Score=82.33 Aligned_cols=160 Identities=13% Similarity=0.143 Sum_probs=95.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCc--eEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQG--KCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
...+.|+|++|+|||+|+..+++.+...++. +.++. . ..+...+...+... ....+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~--------~~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFVNALRNN--------TMEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHcC--------cHHHHHHHH
Confidence 4568999999999999999999988766532 33433 1 11222222222111 112233444
Q ss_pred ccCceEEEEeCCCCc---HHHHHHHhcCCCC-CCCCceEEEEeCchh---------hhhhcCCCeEEEeecCChHHHHHH
Q 043805 292 QRIKVLIVLDDVHDG---FTQLENLVGGSDK-FSPGSRIIITTRDKR---------VLDKCGVDNIFEVKGLQHSKALEL 358 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~---~~~~~~l~~~~~~-~~~~~~iliTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L 358 (555)
. +.-+|+|||++.. ....+.+...+.. ...+..+|+|+.... +.+.+.....+++++++.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 3458999999541 1112223221111 013445777776431 123334456899999999999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 359 FCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
+...+.... ..-.+++++.|++.+.|..-.|.-+
T Consensus 289 l~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 289 LKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 999874322 2234577889999999988765544
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.49 E-value=2.3e-06 Score=95.82 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=100.2
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------CceEEEEechhhccccCh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGKCFVADVREESNKMGV 260 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 260 (555)
|...+.++||+.+++++...|... ...-+.|+|++|+|||++|..+++++.... ...+|...+.........
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 455678999999999999988633 234567999999999999999999875431 122333322221110001
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHh-ccCceEEEEeCCCCcH------HHH---HHHhcCCCCCCCCceEEEEe
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRL-QRIKVLIVLDDVHDGF------TQL---ENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-~~~~~LlVlDdv~~~~------~~~---~~l~~~~~~~~~~~~iliTs 330 (555)
..-+.. .+...+.+.. .+.+++|++|+++... ... ..|.+.+.. ...++|-+|
T Consensus 261 ~ge~e~---------------~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 261 KGEFEN---------------RLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred chHHHH---------------HHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 100001 1111111221 2468999999996511 111 124444432 345666666
Q ss_pred Cchhhh-------hhcCCCeEEEeecCChHHHHHHHHHHhhc--cCCCChhHHHHHHHHHHHhcCC
Q 043805 331 RDKRVL-------DKCGVDNIFEVKGLQHSKALELFCRKAFR--QNNRSHDLLELSQEVVCYADGN 387 (555)
Q Consensus 331 R~~~~~-------~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~--~~~~~~~~~~~~~~i~~~~~G~ 387 (555)
.....- ........+.+++++.+++.++|...... ......-..+....+++.+.++
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 543211 11124568999999999999997544311 1111122344555666666554
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.47 E-value=1.2e-06 Score=84.29 Aligned_cols=177 Identities=19% Similarity=0.301 Sum_probs=104.8
Q ss_pred CCCCCCcccchhhHHH---HHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIEE---MKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|...+.+||.+..+.+ |.+++. .+..+.+.+||++|+||||||+-++..-+.+- ..|+. .+....-..-
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~d 205 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTND 205 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHH
Confidence 3444567777666544 222332 45677888999999999999999988665542 34444 2222222223
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEE--EeCchhhh---h
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIII--TTRDKRVL---D 337 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~ili--TsR~~~~~---~ 337 (555)
.+.++.+.... ..+.+++.+|++|.++.- -.+.+.|++... .|.-++| ||.++.+. .
T Consensus 206 vR~ife~aq~~--------------~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 206 VRDIFEQAQNE--------------KSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHHHHHHHHH--------------HhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHH
Confidence 33444332211 445678999999999541 334455555553 4544443 66665431 1
Q ss_pred hcCCCeEEEeecCChHHHHHHHHHHhh---ccCC-----CC---hhHHHHHHHHHHHhcCCc
Q 043805 338 KCGVDNIFEVKGLQHSKALELFCRKAF---RQNN-----RS---HDLLELSQEVVCYADGNP 388 (555)
Q Consensus 338 ~~~~~~~~~l~~L~~~ea~~Ll~~~~~---~~~~-----~~---~~~~~~~~~i~~~~~G~P 388 (555)
......++.|++|+.++...++.+-.. .... +. .....+.+-++..|+|-.
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 223457899999999999999977321 1111 11 134456677777888864
No 83
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.4e-05 Score=83.23 Aligned_cols=184 Identities=13% Similarity=0.162 Sum_probs=109.6
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------Cce--------------EE
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGK--------------CF 247 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~--------------~~ 247 (555)
...+.++|.+..++.|.+.+..+. -...+.++|++|+|||++|..+++.+-..- +++ -|
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 455779999999999999886332 246788999999999999999998763320 000 01
Q ss_pred EEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceE
Q 043805 248 VADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRI 326 (555)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~i 326 (555)
+. +. .....++ +..+.+...+. ..-..+.+-++|+|+++.- ......|+..+......+.+
T Consensus 93 ~~-i~-g~~~~gi-d~ir~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 93 LE-ID-GASHRGI-EDIRQINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EE-ee-ccccCCH-HHHHHHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 10 00 0000000 11111111110 0011245678999999641 33455666655554456667
Q ss_pred EEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 327 IITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 327 liTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
|++|.+. .+... ......+++.+++.++....+...+-..+ ....++.+..|+..++|.+.-+.
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a~ 220 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDAE 220 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 6666432 22222 23456799999999999999988763322 22335678899999999875443
No 84
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=1.3e-05 Score=86.48 Aligned_cols=191 Identities=12% Similarity=0.133 Sum_probs=110.2
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
|.....++|.+...+.|.+.+..+ .-...+.++|++|+|||++|+.+++.+-.......+-.+ .....
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC-----------~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC-----------QECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch-----------hHHHH
Confidence 344567899999999999998743 235678899999999999999999865322110000000 00000
Q ss_pred HHHH----H-hCCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEe-Cchh
Q 043805 267 VISR----V-LGENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITT-RDKR 334 (555)
Q Consensus 267 ll~~----~-~~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTs-R~~~ 334 (555)
.... . .......+.+.+. .+.+.+ .+++-++|+|+++. .......|+..+...+..+.+|++| ....
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IR-eLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIR-ELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 0000 0 0000000111111 121222 24566999999965 2345666766655544555555554 4333
Q ss_pred hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 335 VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 335 ~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
+... ......+++.+++.++..+.+...+-..+. ....+.+..|+..++|.+.-+.
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 3322 334578999999999999999886633222 2234567889999999775433
No 85
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=1.2e-05 Score=84.37 Aligned_cols=186 Identities=15% Similarity=0.145 Sum_probs=112.8
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CCc--eE----------------EE
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQG--KC----------------FV 248 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~--~~----------------~~ 248 (555)
...+.++|-+...+.|...+..+ .-+....++|++|+|||++|+.+++.+-.. ... .| ++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 45577999999999999988643 235677899999999999999999875321 100 00 00
Q ss_pred EechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEE
Q 043805 249 ADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRII 327 (555)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~il 327 (555)
. +. .....+ ....++++..... .-..++.-++|+|+++. ..+....|+..+...++.+.+|
T Consensus 90 e-ld-aas~~g-Id~IRelie~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 90 E-MD-AASNRG-IDDIRELIEQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred E-ec-cccccC-HHHHHHHHHHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 0 00 000001 1111122111100 00013456899999965 2445666666665545677777
Q ss_pred EEeCchh-hhh-hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 328 ITTRDKR-VLD-KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 328 iTsR~~~-~~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
++|.+.. +.. .......+++.+++.++..+.+...+...+. ...++.+..|++.++|.+.-+..+
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 7776542 111 1224578999999999999999887743322 223567889999999998555444
No 86
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.42 E-value=3e-06 Score=86.85 Aligned_cols=175 Identities=22% Similarity=0.302 Sum_probs=98.2
Q ss_pred CCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNK 257 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 257 (555)
..+.+.|++.++++|.+.+.. +-..++-+.|+|++|+|||++|+.+++.....| +.+. .
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~---i~v~-~------ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVV-G------ 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE---EEee-h------
Confidence 345788999999999886531 112356789999999999999999998765331 1111 0
Q ss_pred cChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HH---HHHHHhcCCCCC--
Q 043805 258 MGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FT---QLENLVGGSDKF-- 320 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~---~~~~l~~~~~~~-- 320 (555)
.. +.....+. ....+...+...-...+.+|+||+++.. .. .+..++..+...
T Consensus 199 ---~~----l~~~~~g~----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 ---SE----LVQKFIGE----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred ---HH----HhHhhccc----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 00 11111110 0011111222222356889999999751 01 122233222211
Q ss_pred CCCceEEEEeCchhhhhh-----cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC
Q 043805 321 SPGSRIIITTRDKRVLDK-----CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN 387 (555)
Q Consensus 321 ~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (555)
..+..||.||.....+.. ......+++++.+.++-.++|..++.+...... .....++..+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 235667777765432211 123467999999999999999887633222111 1145566666665
No 87
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=2.1e-05 Score=83.91 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=113.5
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-----CCceEEEEechhhccccChH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-----FQGKCFVADVREESNKMGVI 261 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~ 261 (555)
|.....++|-+..++.|...+..+ .-.+.+.++|+.|+|||++|+.+++.+-.. .+++.-
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C-------------- 76 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC-------------- 76 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc--------------
Confidence 345567999999999999998743 235678899999999999999999876421 011000
Q ss_pred HHHHHHHHHHh------CCccCCCCCchhHHHHH----HhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEe
Q 043805 262 HVRDEVISRVL------GENLKIGTPTIPQNIRK----RLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 262 ~~~~~ll~~~~------~~~~~~~~~~l~~~l~~----~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
.....+..... ........+.+.+.... -..+++-++|+|+++. .....+.|+..+....+.+.+|++|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEec
Confidence 00000000000 00000111122211100 1134566899999965 1345667777666555667776666
Q ss_pred Cch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 331 RDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 331 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
.+. .+... ......+++.+++.++..+.+...+...+. ...++.+..|+..++|.+..+..
T Consensus 157 te~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 157 TEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 543 22222 234567899999999999999887643322 23356788899999998854433
No 88
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.41 E-value=2.4e-06 Score=95.96 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=87.0
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-C-----CceEEEEechhhccccChHHH
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-F-----QGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~~ 263 (555)
.++.+||+.+++++.+.|... ..+-+.|+|++|+|||++|..+++++... . ...+|..+............-
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 456999999999999999743 23356799999999999999999987532 1 134443322111100000000
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH---------HHHHHHhcCCCCCCCCceEEEEeCchh
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF---------TQLENLVGGSDKFSPGSRIIITTRDKR 334 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~---------~~~~~l~~~~~~~~~~~~iliTsR~~~ 334 (555)
+ ...+...+.+....++++|++|+++... +....|.+.+.. ...++|.+|....
T Consensus 256 ~---------------e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~e 318 (821)
T CHL00095 256 F---------------EERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDE 318 (821)
T ss_pred H---------------HHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHH
Confidence 0 0112222222223568999999995311 112223333321 3355665555443
Q ss_pred hhh-------hcCCCeEEEeecCChHHHHHHHHHH
Q 043805 335 VLD-------KCGVDNIFEVKGLQHSKALELFCRK 362 (555)
Q Consensus 335 ~~~-------~~~~~~~~~l~~L~~~ea~~Ll~~~ 362 (555)
... .......+.+...+.++..+++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 211 1123467889999999988888654
No 89
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=9.1e-06 Score=84.52 Aligned_cols=162 Identities=12% Similarity=0.139 Sum_probs=95.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC--ceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ--GKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
...+.|+|++|+|||+|+..+++.+...++ .+.|+. ...+...+...+... . ...+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~-------~-~~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG-------K-LNEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc-------c-HHHHHHHH
Confidence 456899999999999999999998766543 334443 112333333333211 1 12233334
Q ss_pred ccCceEEEEeCCCCcH--H-HHHHHhcCCCCC-CCCceEEEEeC-chhh--------hhhcCCCeEEEeecCChHHHHHH
Q 043805 292 QRIKVLIVLDDVHDGF--T-QLENLVGGSDKF-SPGSRIIITTR-DKRV--------LDKCGVDNIFEVKGLQHSKALEL 358 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~~--~-~~~~l~~~~~~~-~~~~~iliTsR-~~~~--------~~~~~~~~~~~l~~L~~~ea~~L 358 (555)
....-+|+|||++... . ....+...+... ..+..+|+||. .+.- .+.+.....+++++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3456689999996411 1 112222211110 13456888874 3321 22233456789999999999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 359 FCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
+.+.+.... ..-.++++..|++.+.|+--.|.-+-
T Consensus 272 L~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 272 ARKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHHHhcC--CCCCHHHHHHHHhccccCHHHHHHHH
Confidence 988874322 22335778889999888866665443
No 90
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.40 E-value=6.5e-07 Score=76.71 Aligned_cols=90 Identities=26% Similarity=0.491 Sum_probs=48.7
Q ss_pred ccEEEcCcccccccchHHHHHHHHHhc-------CCce-ee---------eccccCCCCcchHHHHHHHhhcceEEEEec
Q 043805 18 YEVFLSFRGEDTRNGFTSHLAAALHRK-------QIQF-FI---------DDEELKKGDEISPTILKAIETSDISIIIFS 80 (555)
Q Consensus 18 ~dvFiSy~~~D~~~~~~~~l~~~L~~~-------g~~~-~~---------d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S 80 (555)
|+|||||++.|. ...+..|...+... .+.. |. +..+....+.+...|.+.|.+|+++|+++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 579999999996 23777777777663 2221 11 112222345789999999999999999999
Q ss_pred cCCccchhhHHHHHHHHHhHHhcCCEEEEEEe
Q 043805 81 KDYAASKWCLNELVKILDCKKINGQIVIPVFY 112 (555)
Q Consensus 81 ~~~~~s~~~~~El~~~~~~~~~~~~~v~pv~~ 112 (555)
++-..|+|+..|+..+++ .+..||-|..
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 999999999999999885 4455777664
No 91
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.3e-05 Score=83.37 Aligned_cols=199 Identities=17% Similarity=0.150 Sum_probs=112.1
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
.....++|.+...+.|..++..+. -...+.++|+.|+|||++|..+++.+-.......- ...-+.....+.+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~-------~~~Cg~C~~C~~i 84 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT-------PEPCGKCELCRAI 84 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC-------CCCCcccHHHHHH
Confidence 445679999999999999887432 24578899999999999999999876432110000 0000000111111
Q ss_pred HHHHhCC------ccCCCCCchhHHHHHH----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hh
Q 043805 268 ISRVLGE------NLKIGTPTIPQNIRKR----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RV 335 (555)
Q Consensus 268 l~~~~~~------~~~~~~~~l~~~l~~~----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~ 335 (555)
......+ ......+.+.+.+... ..++.-++|+|+++. ..+....|+..+......+.+|++|.+. .+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 1110000 0001111222211111 123456899999975 2345666666655444555555555433 33
Q ss_pred hhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 336 LDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 336 ~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
... ......+++.+++.++....+...+...... ...+.+..|++.++|.+..+..+..
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 322 2345678899999999998888766332211 2245688999999998865544433
No 92
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=2.8e-05 Score=83.23 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=110.0
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
|...+.++|.+...+.|.+++..+. -.+.+.++|+.|+|||++|+.+++.+-...+.. . .+-+.......
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~--------~-~pC~~C~~C~~ 81 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD--------G-EPCNECEICKA 81 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------C-CCCCccHHHHH
Confidence 3456789999999999999987432 356788999999999999999998653221000 0 00000000011
Q ss_pred HHHHHhCC------ccCCCCCchhHHHHHH-----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-
Q 043805 267 VISRVLGE------NLKIGTPTIPQNIRKR-----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK- 333 (555)
Q Consensus 267 ll~~~~~~------~~~~~~~~l~~~l~~~-----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~- 333 (555)
+......+ ....+.+.+.+ +... ..++.-++|+|+++. .......|+..+......+.+|++|...
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 10000000 00001111111 1111 124566899999975 2345666766655544555656555433
Q ss_pred hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 334 RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 334 ~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
.+... ......+++.+++.++..+.+...+...+.. ...+.+..|+..++|.+.-+
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 22222 2345678899999999999998877332222 23466788899999887543
No 93
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.37 E-value=2.5e-06 Score=80.70 Aligned_cols=187 Identities=15% Similarity=0.148 Sum_probs=110.3
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc--CCCceEEEEechhhccccChHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR--DFQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
|...+.++|-+..++.|.+.+.. ...+..+.+||+|.|||+-|..++..+-. -|+.++.-.+........-...-.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 45667899999999999998874 34678889999999999999999987533 244433321111111100000000
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHhccCc-eEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEE-EEeCchhhh-hhcC
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRLQRIK-VLIVLDDVHD-GFTQLENLVGGSDKFSPGSRII-ITTRDKRVL-DKCG 340 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~-~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~il-iTsR~~~~~-~~~~ 340 (555)
.. ...+........ .. ...+ -++|||+++. ..+.|..|...+.......+++ ||+--..+. +...
T Consensus 110 k~-fakl~~~~~~~~---------~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 110 KN-FAKLTVLLKRSD---------GY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred cC-HHHHhhcccccc---------CC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 00 000000000000 00 0122 4899999965 3566777777776655666655 444322111 1112
Q ss_pred CCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 341 VDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 341 ~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
....+..++|..++..+-|...+-..+ .+...+....|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCcH
Confidence 345688999999999999988874333 3334677888999988853
No 94
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=3.1e-05 Score=83.62 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=110.1
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC----------------------ce
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ----------------------GK 245 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----------------------~~ 245 (555)
...+.++|.+...+.|.+.+..+ .-...+.++|+.|+|||++|..++..+-.... ..
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 44567999999999999998633 23567889999999999999999987632110 00
Q ss_pred EEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCc
Q 043805 246 CFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGS 324 (555)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~ 324 (555)
..+. ...... ...++.++..+... -..+.+-++|+|+++. .......|+..+......+
T Consensus 93 ~~ld----~~~~~~-vd~Ir~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 93 HELD----AASNNS-VDDIRNLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred EEec----ccccCC-HHHHHHHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 0110 000000 11111221111000 0113455889999965 2345666666655544566
Q ss_pred eEEEEe-Cchhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHH
Q 043805 325 RIIITT-RDKRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALE 392 (555)
Q Consensus 325 ~iliTs-R~~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 392 (555)
.+|++| ....+... ......+++.+++.++....+...+...+. ....+.+..|+..++|...-+.
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 666555 43333332 234578999999999999999887643322 2234567889999999775443
No 95
>PRK06620 hypothetical protein; Validated
Probab=98.36 E-value=6.1e-06 Score=77.12 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=82.8
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRI 294 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~ 294 (555)
+.+.|+|++|+|||+|++.+++.... .++... ... . +.. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~~----~-----------------------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FFN----E-----------------------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hhc----h-----------------------hHH-hc
Confidence 56899999999999999987765421 222100 000 0 011 12
Q ss_pred ceEEEEeCCCCcHH--HHHHHhcCCCCCCCCceEEEEeCchh-------hhhhcCCCeEEEeecCChHHHHHHHHHHhhc
Q 043805 295 KVLIVLDDVHDGFT--QLENLVGGSDKFSPGSRIIITTRDKR-------VLDKCGVDNIFEVKGLQHSKALELFCRKAFR 365 (555)
Q Consensus 295 ~~LlVlDdv~~~~~--~~~~l~~~~~~~~~~~~iliTsR~~~-------~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~ 365 (555)
.-+|++||++. .. .+-.+...+.. .|..+|+|++.+. ..+.+.....+++++++.++-.+++.+.+..
T Consensus 86 ~d~lliDdi~~-~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 86 YNAFIIEDIEN-WQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CCEEEEecccc-chHHHHHHHHHHHHh--cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 34788999975 32 22222222222 4567889887542 2333345568999999999988888887632
Q ss_pred cCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 366 QNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
.. ..-.+++.+-|++.+.|.--.+.-+-
T Consensus 163 ~~--l~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 163 SS--VTISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred cC--CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 21 22335677888888877765554443
No 96
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.34 E-value=0.00011 Score=73.70 Aligned_cols=195 Identities=13% Similarity=0.125 Sum_probs=107.7
Q ss_pred ceEEEEeCCCC----------cHHHHHHHhcCCCCCCCCceEEEEeCchhhhhh----c--CCCeEEEeecCChHHHHHH
Q 043805 295 KVLIVLDDVHD----------GFTQLENLVGGSDKFSPGSRIIITTRDKRVLDK----C--GVDNIFEVKGLQHSKALEL 358 (555)
Q Consensus 295 ~~LlVlDdv~~----------~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~----~--~~~~~~~l~~L~~~ea~~L 358 (555)
+=++|+||+.. ....|...+-. .+-.+||++|-+...... + .....+.|.-.+++-|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 56899999932 12223332222 145588888876533222 2 2457889999999999999
Q ss_pred HHHHhhccCCC------------------ChhHHHHHHHHHHHhcCCchHHHHHHhhhcC-CCHHH-HHHHHHhhccCCC
Q 043805 359 FCRKAFRQNNR------------------SHDLLELSQEVVCYADGNPLALEVLGSSLHQ-KSKQQ-WEDKLHNLKLISE 418 (555)
Q Consensus 359 l~~~~~~~~~~------------------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~-~~~~~-~~~~l~~l~~~~~ 418 (555)
+..++...... ...........++.+||--.=|+.+++.++. .++.+ ..+...
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~------- 297 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS------- 297 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH-------
Confidence 99988432110 0123455677888899999999999988865 23222 111111
Q ss_pred ccHHHHHHHhHh-------cC--C-HhhHHHHhhhccccCccchhhhHhhhcCC--ccHHHHHHHHHhccceeEeccCCE
Q 043805 419 PSIYKVLKISYD-------EL--N-SEEKEIFLDIACFFNGEYIDFVTRIQDDP--MSIRDRLNILIDKSLITISSYGNR 486 (555)
Q Consensus 419 ~~l~~~l~~s~~-------~L--~-~~~~~~l~~la~f~~~~~~~~l~~~~~~~--~~~~~~l~~L~~~sLl~~~~~~~~ 486 (555)
.++..+...-+. .+ + +.+-.++..+| ..-.+..=.-++... ...+..|..|.+..||.....+|+
T Consensus 298 qsa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls---~~~~v~Y~~ll~~~lFk~~~E~~L~aLe~aeLItv~~~~G~ 374 (431)
T PF10443_consen 298 QSASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLS---KNDEVPYNELLLSPLFKGNDETALRALEQAELITVTTDNGR 374 (431)
T ss_pred HHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhc---cCCcCcHHHHHcccccCCCChHHHHHHHHCCcEEEEecCCc
Confidence 111112211111 01 1 12222333332 221221111122211 235679999999999998776554
Q ss_pred ---EEc-cHHHHHHHHHHHhh
Q 043805 487 ---LRM-HDLLQEMGQIIVRQ 503 (555)
Q Consensus 487 ---~~~-H~lvr~~~~~~~~~ 503 (555)
++- -|+.|...+.++..
T Consensus 375 p~~I~pGkPvy~aAF~~L~~D 395 (431)
T PF10443_consen 375 PSTIRPGKPVYRAAFKRLVND 395 (431)
T ss_pred CCeeECCChhHHHHHHHHhhC
Confidence 333 67777777766643
No 97
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.34 E-value=9.6e-06 Score=81.21 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=88.1
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
|...+.++|.+...+.+..++..+ .-+..+.++|++|+|||++|..+++..... ...+.. .. .. ....+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~~----~~-~~-~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVNG----SD-CR-IDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEecc----Cc-cc-HHHHHH
Confidence 345578999999999999988632 235678789999999999999998876322 222221 11 11 111222
Q ss_pred HHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc--HHHHHHHhcCCCCCCCCceEEEEeCchhhh-h-hcCCC
Q 043805 267 VISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG--FTQLENLVGGSDKFSPGSRIIITTRDKRVL-D-KCGVD 342 (555)
Q Consensus 267 ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~-~~~~~ 342 (555)
.+...... ......+-+||+|+++.. .+....+...+.....++.+|+|+.....+ . .....
T Consensus 87 ~l~~~~~~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 87 RLTRFAST--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHHh--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 11111100 001134568999999752 122233333233334677888888654211 1 11234
Q ss_pred eEEEeecCChHHHHHHHHHH
Q 043805 343 NIFEVKGLQHSKALELFCRK 362 (555)
Q Consensus 343 ~~~~l~~L~~~ea~~Ll~~~ 362 (555)
..+.++..+.++..+++...
T Consensus 153 ~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred eEEEeCCCCHHHHHHHHHHH
Confidence 56788888888887776543
No 98
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.2e-05 Score=84.49 Aligned_cols=191 Identities=16% Similarity=0.178 Sum_probs=109.4
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC---ceEEEEechhhccccChHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ---GKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~ 264 (555)
...+.++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|..+++.+-..-. ..|-.+ ...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c------------~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC------------PPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc------------HHH
Confidence 45578999999999999988643 23567789999999999999999987532100 000000 000
Q ss_pred HHHHHHHh------CCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043805 265 DEVISRVL------GENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD 332 (555)
Q Consensus 265 ~~ll~~~~------~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~ 332 (555)
..+...-. ........+.+. .+.+.+ .++.-++|+|+++. .......|+..+....+.+.+|++|.+
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir-~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIR-ELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHH-HHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 00000000 000000111111 111111 23445899999965 234566666666554466666655543
Q ss_pred -hhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch-HHHHH
Q 043805 333 -KRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL-ALEVL 394 (555)
Q Consensus 333 -~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 394 (555)
..+... ......+++.+++.++....+...+...+. ....+.+..|+..++|... ++..+
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333322 234567889999999999998877633222 2235667889999999764 44443
No 99
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=0.00012 Score=77.66 Aligned_cols=162 Identities=16% Similarity=0.213 Sum_probs=95.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC--ceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ--GKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
...+.|+|..|+|||.|+..+++.+...+. .++|+. ...+...+...+... ....+.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 345899999999999999999998765432 334443 112222333222211 112233333
Q ss_pred ccCceEEEEeCCCCc---HHHHHHHhcCCCCC-CCCceEEEEeCch---------hhhhhcCCCeEEEeecCChHHHHHH
Q 043805 292 QRIKVLIVLDDVHDG---FTQLENLVGGSDKF-SPGSRIIITTRDK---------RVLDKCGVDNIFEVKGLQHSKALEL 358 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~---~~~~~~l~~~~~~~-~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 358 (555)
.+ .=+|+|||++.. ...-+.|+..++.. ..+..|||||... .+.+.+.....++|.+.+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 357889999541 11112222222111 1355788888753 2233444567899999999999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 359 FCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
|.+.+.... ....+++++-|++.+.++.-.|.-+..
T Consensus 455 L~kka~~r~--l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 455 LRKKAVQEQ--LNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 998874332 223467788888888877666554433
No 100
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.9e-05 Score=78.61 Aligned_cols=154 Identities=11% Similarity=0.118 Sum_probs=93.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCC---------------------CceEEEEechhhccccChHHHHHHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDF---------------------QGKCFVADVREESNKMGVIHVRDEVISRV 271 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 271 (555)
-+..+.++|+.|+|||++|..+++.+-... +...++... ..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~--~~---------------- 82 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE--EA---------------- 82 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc--CC----------------
Confidence 366888999999999999999998763321 111222100 00
Q ss_pred hCCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchh-hhhh-cCCCe
Q 043805 272 LGENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKR-VLDK-CGVDN 343 (555)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~~-~~~~~ 343 (555)
...+..+++.+ +.+.+ .+++-++|+|+++. .......|+..+...++++.+|++|.+.. +++. .....
T Consensus 83 ---~~~i~id~iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~ 158 (328)
T PRK05707 83 ---DKTIKVDQVRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ 158 (328)
T ss_pred ---CCCCCHHHHHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhce
Confidence 00112222222 11111 13344567899964 35566777776665556777777777653 3322 23457
Q ss_pred EEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 344 IFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 344 ~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
.+.+.+++.+++.+.+..... .. ..+.+..++..++|.|+....+
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~--~~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALP--ES----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhcc--cC----ChHHHHHHHHHcCCCHHHHHHH
Confidence 799999999999999987541 11 1234567788999999755444
No 101
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.31 E-value=4.5e-05 Score=70.74 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=103.7
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchh----HH
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIP----QN 286 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~----~~ 286 (555)
.++.+++.|+|.-|+|||.+.+.....+-+.--..+.+. .+..+...+...++..+.. .......... ..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHH
Confidence 355679999999999999999955544433222222222 2333444555666666555 2222222222 22
Q ss_pred HHHHh-ccCc-eEEEEeCCCC----cHHHHHHHhcCCCCCCCCceEEEEeCch-------hhhhhc-CCCeE-EEeecCC
Q 043805 287 IRKRL-QRIK-VLIVLDDVHD----GFTQLENLVGGSDKFSPGSRIIITTRDK-------RVLDKC-GVDNI-FEVKGLQ 351 (555)
Q Consensus 287 l~~~l-~~~~-~LlVlDdv~~----~~~~~~~l~~~~~~~~~~~~iliTsR~~-------~~~~~~-~~~~~-~~l~~L~ 351 (555)
+.... ++++ +.+++|++++ ..+.+..|...-.......+|+...... ..+... ..... |+++|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 22222 3444 9999999954 1223333333322222233444443321 111111 12233 8999999
Q ss_pred hHHHHHHHHHHhhccCCCCh-hHHHHHHHHHHHhcCCchHHHHHHhh
Q 043805 352 HSKALELFCRKAFRQNNRSH-DLLELSQEVVCYADGNPLALEVLGSS 397 (555)
Q Consensus 352 ~~ea~~Ll~~~~~~~~~~~~-~~~~~~~~i~~~~~G~PLal~~~a~~ 397 (555)
.++...++..++.+...+.+ -..+....|.....|.|.++..++..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999998855433332 23566788999999999999988653
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.28 E-value=2e-05 Score=81.59 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=94.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC--ceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ--GKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
...+.|+|++|+|||+|+..+++.+....+ .++++. ...+...+...+... ....+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 456889999999999999999998766543 334443 112222333333211 112233333
Q ss_pred ccCceEEEEeCCCCc---HHHHHHHhcCCCCC-CCCceEEEEeCch-h--------hhhhcCCCeEEEeecCChHHHHHH
Q 043805 292 QRIKVLIVLDDVHDG---FTQLENLVGGSDKF-SPGSRIIITTRDK-R--------VLDKCGVDNIFEVKGLQHSKALEL 358 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~---~~~~~~l~~~~~~~-~~~~~iliTsR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~L 358 (555)
.+ .-+|+|||++.. ....+.+...+... ..+..+|+|+... . +.+.+.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 348999999641 11112222222110 1345678877642 1 122223345789999999999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 359 FCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
+...+.... ..-.++++..|++.+.|..-.|.-+-
T Consensus 277 l~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 277 LQKKAEEEG--LELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 998874332 22336778888999888877655443
No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.28 E-value=1.2e-05 Score=90.73 Aligned_cols=158 Identities=12% Similarity=0.040 Sum_probs=89.1
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------CceEEEEechhhccccCh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGKCFVADVREESNKMGV 260 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 260 (555)
+...+.++||+.+++++...|... ....+.++|++|+|||+++..+++++.... ...+|..++.........
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~ 246 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKY 246 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchh
Confidence 345567999999999999988643 234566899999999999999999875431 223333322111000000
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHhc-cCceEEEEeCCCCcH---------HHHHHHhcCCCCCCCCceEEEEe
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ-RIKVLIVLDDVHDGF---------TQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~-~~~~LlVlDdv~~~~---------~~~~~l~~~~~~~~~~~~iliTs 330 (555)
..- ....+...+.+... +++.+|++|+++... +....|.+.+. . ....+|.+|
T Consensus 247 ~g~---------------~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~-g~i~~IgaT 309 (852)
T TIGR03346 247 RGE---------------FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-R-GELHCIGAT 309 (852)
T ss_pred hhh---------------HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-c-CceEEEEeC
Confidence 000 00111122222212 468999999997511 12223333332 1 334555555
Q ss_pred Cchhhhh-------hcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 331 RDKRVLD-------KCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 331 R~~~~~~-------~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.....-. .......+.++..+.++..+++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4332211 11244678899999999999987653
No 104
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.28 E-value=7.7e-06 Score=91.89 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=88.4
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------CceEEEEechhhccccCh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGKCFVADVREESNKMGV 260 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 260 (555)
+...++++||+.+++++...|... ....+.++|++|+|||+||..++.++.... ...+|..++.........
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 345567999999999999988743 234567999999999999999999875421 223333222211100000
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHh-ccCceEEEEeCCCCcH---------HHHHHHhcCCCCCCCCceEEEEe
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRL-QRIKVLIVLDDVHDGF---------TQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~~l~~~~~~~~~~~~iliTs 330 (555)
..-+. ..+...+.+.. .+.+++|++|+++... +....|.+.+.. ...++|-+|
T Consensus 252 ~g~~e---------------~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaT 314 (857)
T PRK10865 252 RGEFE---------------ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGAT 314 (857)
T ss_pred hhhhH---------------HHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcC
Confidence 00000 11111121211 2468999999996511 122333344332 344555555
Q ss_pred Cchhhh-------hhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 331 RDKRVL-------DKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 331 R~~~~~-------~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
..+... ........+.++..+.++...+++...
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 443321 011234467788889999998886654
No 105
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.26 E-value=7.8e-06 Score=79.31 Aligned_cols=133 Identities=15% Similarity=0.177 Sum_probs=71.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCC--CceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDF--QGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKR 290 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~ 290 (555)
....+.++|++|+|||++|+.+++.+.... ....++. +.. .. +.....+. ....+...+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-------~~----l~~~~~g~----~~~~~~~~~~~a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-------AD----LVGEYIGH----TAQKTREVIKKA 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH-------HH----hhhhhccc----hHHHHHHHHHhc
Confidence 345688999999999999999988653221 1112222 100 00 11111110 011111112111
Q ss_pred hccCceEEEEeCCCCc---------HHHHHHHhcCCCCCCCCceEEEEeCchhh---h---hhc--CCCeEEEeecCChH
Q 043805 291 LQRIKVLIVLDDVHDG---------FTQLENLVGGSDKFSPGSRIIITTRDKRV---L---DKC--GVDNIFEVKGLQHS 353 (555)
Q Consensus 291 l~~~~~LlVlDdv~~~---------~~~~~~l~~~~~~~~~~~~iliTsR~~~~---~---~~~--~~~~~~~l~~L~~~ 353 (555)
...+|++|+++.. .+.+..++..+........+++++..... . +.. .....+.+++++.+
T Consensus 105 ---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~ 181 (261)
T TIGR02881 105 ---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVE 181 (261)
T ss_pred ---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHH
Confidence 2358999999641 23455566555443344555665543211 0 001 12356899999999
Q ss_pred HHHHHHHHHhh
Q 043805 354 KALELFCRKAF 364 (555)
Q Consensus 354 ea~~Ll~~~~~ 364 (555)
|-.+++...+.
T Consensus 182 el~~Il~~~~~ 192 (261)
T TIGR02881 182 ELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHH
Confidence 99999988773
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=5.4e-05 Score=78.61 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=88.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
...+.|+|++|+|||+|+..+++.+......++++. ...+...+...+... . ...++....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~-------~-~~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG-------E-MQRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc-------h-HHHHHHHcc-
Confidence 356889999999999999999998765544455544 111222222222110 1 122333333
Q ss_pred CceEEEEeCCCCc---HHHHHHHhcCCCC-CCCCceEEEEeCc-h--------hhhhhcCCCeEEEeecCChHHHHHHHH
Q 043805 294 IKVLIVLDDVHDG---FTQLENLVGGSDK-FSPGSRIIITTRD-K--------RVLDKCGVDNIFEVKGLQHSKALELFC 360 (555)
Q Consensus 294 ~~~LlVlDdv~~~---~~~~~~l~~~~~~-~~~~~~iliTsR~-~--------~~~~~~~~~~~~~l~~L~~~ea~~Ll~ 360 (555)
..-+|++||++.. ....+.+...++. ...+..||+||.. + .+.+.+..+..+++.+++.++-.+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 3458889998541 1112222221110 0134578888854 2 122233345788999999999999998
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 361 RKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
+.+-... ..-.+++..-|+..+.|+-
T Consensus 282 ~k~~~~~--~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALS--IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCH
Confidence 8773322 2233566677777777664
No 107
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=0.00013 Score=72.21 Aligned_cols=193 Identities=14% Similarity=0.112 Sum_probs=110.5
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC---------------CCceEEEEechhhc
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD---------------FQGKCFVADVREES 255 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~ 255 (555)
..++|.+...+.|.+.+..+ .-+....++|+.|+||+++|..+++.+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 45899999999999988643 225789999999999999999999865321 23344443110000
Q ss_pred cccChHHHHHHHHHHHh---CCccCCCCCchhHHHHHHhc-----cCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceE
Q 043805 256 NKMGVIHVRDEVISRVL---GENLKIGTPTIPQNIRKRLQ-----RIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRI 326 (555)
Q Consensus 256 ~~~~~~~~~~~ll~~~~---~~~~~~~~~~l~~~l~~~l~-----~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~i 326 (555)
.. ... ...+...+ .....+..+++. .+.+.+. +.+-++|+|+++. .......|+..+...+ .+.+
T Consensus 83 g~-~~~---~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 GK-LIT---ASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cc-ccc---hhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00 000 00000000 000011222222 2333332 4567999999964 2345566666555444 4445
Q ss_pred EEEeC-chhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 327 IITTR-DKRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 327 liTsR-~~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
|++|. ...+++. ......+++.+++.++..+.+...... ... ......++..++|.|.....+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~~~---~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--EIL---NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--ccc---hhHHHHHHHHcCCCHHHHHHHH
Confidence 55544 3333332 235678999999999999999887521 111 1113578899999997655433
No 108
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=3.4e-05 Score=83.57 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=40.4
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|...+.++|++..+..+.+.+.. .....++|+|++|+||||||+.+.+..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45567899999999988877642 334579999999999999999987655
No 109
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.19 E-value=2.3e-05 Score=81.92 Aligned_cols=163 Identities=20% Similarity=0.325 Sum_probs=90.0
Q ss_pred CCCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC-----CceEEEEec
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF-----QGKCFVADV 251 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~ 251 (555)
.....+.|.+.+++++.+.+.. +-..++-+.|+|++|+|||++|+.+++.+...+ ....|+. +
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c
Confidence 3445677899999888876531 112356689999999999999999999875542 1233332 1
Q ss_pred hhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHH-hccCceEEEEeCCCCcH-------------HHHHHHhcCC
Q 043805 252 REESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKR-LQRIKVLIVLDDVHDGF-------------TQLENLVGGS 317 (555)
Q Consensus 252 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~-l~~~~~LlVlDdv~~~~-------------~~~~~l~~~~ 317 (555)
... .++....+.... ....+....++. ..+++++|+||+++... ..+..++..+
T Consensus 258 ~~~-----------eLl~kyvGete~-~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 258 KGP-----------ELLNKYVGETER-QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred cch-----------hhcccccchHHH-HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 110 000000000000 000111122222 23578999999996410 0123344333
Q ss_pred CCC--CCCceEEEEeCchhhh-----hhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 318 DKF--SPGSRIIITTRDKRVL-----DKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 318 ~~~--~~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
... ..+..||.||-....+ ........++++..+.++..++|..++
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 221 1344556566443221 111235679999999999999999887
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.18 E-value=6.9e-05 Score=72.09 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=113.7
Q ss_pred CCcccch---hhHHHHHhhhcc-cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC------ceEEEEechhhccccCh
Q 043805 191 DSFVGLN---SRIEEMKSLMCL-ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ------GKCFVADVREESNKMGV 260 (555)
Q Consensus 191 ~~fvGR~---~el~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 260 (555)
+.+||-. ..++.|.+++.. .....+-+.|+|.+|.|||++++.|.......++ .++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 3455543 446666777763 3345677999999999999999999986644332 122222 3456677
Q ss_pred HHHHHHHHHHHhCCcc-CCCCCchhHHHHHHhcc-CceEEEEeCCCCc----HHHHHH---HhcCCCCCCCCceEEEEeC
Q 043805 261 IHVRDEVISRVLGENL-KIGTPTIPQNIRKRLQR-IKVLIVLDDVHDG----FTQLEN---LVGGSDKFSPGSRIIITTR 331 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~-~~~~~~l~~~l~~~l~~-~~~LlVlDdv~~~----~~~~~~---l~~~~~~~~~~~~iliTsR 331 (555)
..+...++..++..-. ......+.......++. +.-+||+|++++. ...... ++..+.+.-.-+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 7888999998877654 23344445555566655 4459999999661 111111 1222211112334555555
Q ss_pred chhhhhh-----cCCCeEEEeecCChH-HHHHHHHHHhhc---cCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 332 DKRVLDK-----CGVDNIFEVKGLQHS-KALELFCRKAFR---QNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 332 ~~~~~~~-----~~~~~~~~l~~L~~~-ea~~Ll~~~~~~---~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
+..-+-. ......+.|+....+ |..+|+...... .....-...+++..|...++|+.--+..+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 4311111 113456677776554 444555433211 11112234678999999999997555433
No 111
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.18 E-value=0.00013 Score=68.00 Aligned_cols=127 Identities=17% Similarity=0.333 Sum_probs=74.1
Q ss_pred CCCCCCCcccchhhHHHHHhhhc--ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMC--LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
.+...+.++|-+.+.+.|.+-.. .......-+.++|..|+|||+|++.+.+...... .-+..+.. ..-..+
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k-~~L~~l--- 94 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSK-EDLGDL--- 94 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECH-HHhccH---
Confidence 34556789999999999876432 1223456788999999999999999998877653 22221111 000111
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCC--CC---cHHHHHHHhcC-CCCCCCCceEEEEeCchhhhh
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDV--HD---GFTQLENLVGG-SDKFSPGSRIIITTRDKRVLD 337 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv--~~---~~~~~~~l~~~-~~~~~~~~~iliTsR~~~~~~ 337 (555)
.. +.+.++ -...+++|++||+ +. ....++.++.. +...+.++.|..||-.+...+
T Consensus 95 -~~----------------l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 95 -PE----------------LLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred -HH----------------HHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 11 111111 1246899999999 22 23345555533 333345666667775555444
Q ss_pred h
Q 043805 338 K 338 (555)
Q Consensus 338 ~ 338 (555)
.
T Consensus 156 E 156 (249)
T PF05673_consen 156 E 156 (249)
T ss_pred h
Confidence 3
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.18 E-value=1.3e-05 Score=88.02 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=85.9
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------CceEEEEechhhccccChHHH
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 263 (555)
.++++||+.+++++.+.|.... ..-+.|+|++|+|||++|+.+++.+.... ...+|....
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~------------ 250 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI------------ 250 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH------------
Confidence 3569999999999999887432 23457899999999999999998764321 122232111
Q ss_pred HHHHHHHHhCCcc-CCCCCchhHHHHHHhccCceEEEEeCCCCc---------HHHHH-HHhcCCCCCCCCceEEEEeCc
Q 043805 264 RDEVISRVLGENL-KIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------FTQLE-NLVGGSDKFSPGSRIIITTRD 332 (555)
Q Consensus 264 ~~~ll~~~~~~~~-~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~-~l~~~~~~~~~~~~iliTsR~ 332 (555)
..++. +... +.....+...+...-...+.+|++|+++.. ..... .+.+.+.. ...++|-+|..
T Consensus 251 -~~lla---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~ 324 (758)
T PRK11034 251 -GSLLA---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTY 324 (758)
T ss_pred -HHHhc---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCCh
Confidence 01110 0000 000011111111222346789999999641 11122 22333321 34555555543
Q ss_pred hhhhh-------hcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 333 KRVLD-------KCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 333 ~~~~~-------~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
+.... .......+.+++++.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32210 11244689999999999999998653
No 113
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.10 E-value=5e-05 Score=77.60 Aligned_cols=177 Identities=20% Similarity=0.252 Sum_probs=98.5
Q ss_pred CCCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
..-..+.|-+...++|.+.+.. +-..++-+.|+|++|+|||+||+.+++.....| +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~~------ 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVVG------ 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh------
Confidence 3445688988888888775531 112467799999999999999999998764332 11110
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------H---HHHHHHhcCCCC--
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------F---TQLENLVGGSDK-- 319 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~---~~~~~l~~~~~~-- 319 (555)
.. +.....+. ....+...+.......|.+|+||+++.. . ..+..++..+..
T Consensus 213 ----s~----l~~k~~ge----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 ----SE----FVQKYLGE----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred ----HH----HHHHhcch----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 00 11111110 1111222233334567899999998641 0 012233332221
Q ss_pred CCCCceEEEEeCchhhhh-----hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 320 FSPGSRIIITTRDKRVLD-----KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 320 ~~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
...+..||+||.....+. .......++++..+.++-..+|........... . -....++..+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-E--VDLEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-c--cCHHHHHHHcCCCC
Confidence 124567787776543221 112456789999999988888876653221111 1 12456666776654
No 114
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.09 E-value=4.7e-06 Score=73.50 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=57.2
Q ss_pred cEEEcCccccc-ccchHHHHHHHHHhc-CCceeeeccccCC--CCcchHHHHHHHhhcceEEEEeccCC
Q 043805 19 EVFLSFRGEDT-RNGFTSHLAAALHRK-QIQFFIDDEELKK--GDEISPTILKAIETSDISIIIFSKDY 83 (555)
Q Consensus 19 dvFiSy~~~D~-~~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~~ 83 (555)
.||||||+... ...+|..|+..|++. |+.|.+|.|+... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999998554 246799999999999 9999999999854 88999999999999999999999654
No 115
>CHL00176 ftsH cell division protein; Validated
Probab=98.06 E-value=6.3e-05 Score=81.31 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=98.8
Q ss_pred CCCCcccchhhHHHHHhhhc---cc-------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMC---LE-------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM 258 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~---~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 258 (555)
....+.|.++..+++.+.+. .. ...++-+.|+|++|+|||+||+.++...... |+. + +. .
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-i---s~-s 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-I---SG-S 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-c---cH-H
Confidence 34567888777666665542 11 1224568999999999999999998865322 221 0 00 0
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH---------------HHHHHHhcCCCCC--C
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF---------------TQLENLVGGSDKF--S 321 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~l~~~~~~~--~ 321 (555)
.+ .. ...+ .....+...+.+.....+++|+|||++... ..+..++..+... .
T Consensus 251 ~f---~~----~~~g----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EF---VE----MFVG----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HH---HH----Hhhh----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 00 00 0000 011223334445556789999999996510 1233444333211 2
Q ss_pred CCceEEEEeCchhhhh-----hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcC
Q 043805 322 PGSRIIITTRDKRVLD-----KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADG 386 (555)
Q Consensus 322 ~~~~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G 386 (555)
.+..||.||.....+. .......+.++..+.++-.++++.++..... ........++..+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 4556666665543221 1124567899999999999999888733211 122345677777777
No 116
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.05 E-value=1.6e-05 Score=68.16 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEecCcchhHHHHHHHHHhhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 117
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.05 E-value=9.7e-05 Score=72.34 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=71.6
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcCC--CceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRDF--QGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
-+.++|++|+|||++|+.+++.+.... ....|+.. .. . .++..+.+.. ...+...+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v----~~----~----~l~~~~~g~~----~~~~~~~~~~a--- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV----TR----D----DLVGQYIGHT----APKTKEILKRA--- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe----cH----H----HHhHhhcccc----hHHHHHHHHHc---
Confidence 588999999999999998887654321 11223321 10 1 1122221111 11112222222
Q ss_pred CceEEEEeCCCCc----------HHHHHHHhcCCCCCCCCceEEEEeCchhhhh--hc------CCCeEEEeecCChHHH
Q 043805 294 IKVLIVLDDVHDG----------FTQLENLVGGSDKFSPGSRIIITTRDKRVLD--KC------GVDNIFEVKGLQHSKA 355 (555)
Q Consensus 294 ~~~LlVlDdv~~~----------~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~--~~------~~~~~~~l~~L~~~ea 355 (555)
.+-+|+||+++.. .+....|+..+.....+.+||+++.....-. .. .....+++++++.+|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3468999999631 2233445554444345667777765331111 00 1245799999999999
Q ss_pred HHHHHHHhh
Q 043805 356 LELFCRKAF 364 (555)
Q Consensus 356 ~~Ll~~~~~ 364 (555)
.+++...+-
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 999988773
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.04 E-value=4.6e-05 Score=81.02 Aligned_cols=183 Identities=19% Similarity=0.193 Sum_probs=99.4
Q ss_pred CCCCCcccchhhHHHHHhhhc---c-------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMC---L-------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNK 257 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 257 (555)
...+.++|-+...+++.+.+. . +...++-+.++|++|+|||+||+.++......| +. + +.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i---~~- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I---SG- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c---cH-
Confidence 344567888777666655432 1 122345689999999999999999997653321 11 0 00
Q ss_pred cChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH---------------HHHHHHhcCCCCC--
Q 043805 258 MGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF---------------TQLENLVGGSDKF-- 320 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~l~~~~~~~-- 320 (555)
.. +.....+ .....+...+.......|.+|+|||++... ..+..++..+...
T Consensus 122 ---~~----~~~~~~g----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 ---SD----FVEMFVG----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred ---HH----HHHHHhc----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 00 0111110 011223333444445678999999995510 1122333332211
Q ss_pred CCCceEEEEeCchhh-----hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC-chHHHHH
Q 043805 321 SPGSRIIITTRDKRV-----LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN-PLALEVL 394 (555)
Q Consensus 321 ~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 394 (555)
..+..||.||..+.. .........+.++..+.++-.+++...+....... ......++..+.|. +--|..+
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence 234556666654321 11123456789999999999999988763322211 12245788888774 3444443
No 119
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=9.1e-05 Score=71.84 Aligned_cols=172 Identities=19% Similarity=0.300 Sum_probs=95.8
Q ss_pred CcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccCh
Q 043805 192 SFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGV 260 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 260 (555)
..=|-++++++|.+.... +-+.++-|.++||||.|||-||++++++.... |+..++.
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS------- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS------- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH-------
Confidence 344566667776665431 12346779999999999999999999876543 3432211
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHh-ccCceEEEEeCCCC------------c---HHHHHHHhcCCCCCC--C
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRL-QRIKVLIVLDDVHD------------G---FTQLENLVGGSDKFS--P 322 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-~~~~~LlVlDdv~~------------~---~~~~~~l~~~~~~~~--~ 322 (555)
++.+...++. ..+.+.+.+.. .+.|.+|++|.++. + ...+-.|+..+.-+. .
T Consensus 220 -----ElVqKYiGEG-----aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 -----ELVQKYIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred -----HHHHHHhccc-----hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 2333333321 11222222333 45799999999965 0 112233444443332 4
Q ss_pred CceEEEEeCchhh-----hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 323 GSRIIITTRDKRV-----LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 323 ~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
..+||..|-..+. +.....+..++++.-+.+.-.+.|.-+.. .....+.. -.+.|++.|.|.-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr-kM~l~~dv--d~e~la~~~~g~s 357 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR-KMNLADDV--DLELLARLTEGFS 357 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh-hccCccCc--CHHHHHHhcCCCc
Confidence 6788877754433 33334567888886666655666655552 22211111 1456777777764
No 120
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.0001 Score=73.90 Aligned_cols=171 Identities=16% Similarity=0.224 Sum_probs=102.2
Q ss_pred CCCCCcccchhhHHHHHhhhcc--cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCc--eEEEEechhhccccChHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCL--ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQG--KCFVADVREESNKMGVIHV 263 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 263 (555)
..+..++||+.|+..+..++.. .....+.+-|.|.+|.|||.+...++.+....... .+++.+..- .....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl----~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL----TEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc----cchHHH
Confidence 3457899999999999998862 33456788999999999999999999887766543 356653321 222334
Q ss_pred HHHHHHHHhCCcc-CCCCCchhHHHHHHhcc--CceEEEEeCCCCcHHH--HHHHhcCCCCC-CCCceEEEEeCc-----
Q 043805 264 RDEVISRVLGENL-KIGTPTIPQNIRKRLQR--IKVLIVLDDVHDGFTQ--LENLVGGSDKF-SPGSRIIITTRD----- 332 (555)
Q Consensus 264 ~~~ll~~~~~~~~-~~~~~~l~~~l~~~l~~--~~~LlVlDdv~~~~~~--~~~l~~~~~~~-~~~~~iliTsR~----- 332 (555)
+..+...+..... +-...+....+.+...+ ..+|+|+|.++. ... ...+...+.|. -+++++|+..--
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~-L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH-LITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhH-HhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 4444444421111 11113344444455443 368999999976 221 11111111111 145555544321
Q ss_pred -hhhhhhcC-----CCeEEEeecCChHHHHHHHHHHh
Q 043805 333 -KRVLDKCG-----VDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 333 -~~~~~~~~-----~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
+..+..+. ....+..+|.+.++..++|.+++
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 11222222 23567889999999999999988
No 121
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00025 Score=70.08 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=64.3
Q ss_pred cCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCC
Q 043805 293 RIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNR 369 (555)
Q Consensus 293 ~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~ 369 (555)
++.-++|+|+++. .......|+..+....+++.+|++|.+. .+++. ......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 3456999999965 2455667777666655777777777653 33332 2345788999999999999997532 1
Q ss_pred ChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 370 SHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 370 ~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
. ...+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2236678999999998654443
No 122
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.99 E-value=2.1e-05 Score=80.97 Aligned_cols=176 Identities=20% Similarity=0.247 Sum_probs=97.7
Q ss_pred CCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNK 257 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 257 (555)
......|.+.++++|.+.+.. +-..++.++|+|++|+|||+||+.+++.....| +.+.. +
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f---i~V~~----s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF---LRVVG----S-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE---EEEec----c--
Confidence 335678999999998886641 112356788999999999999999999775443 11110 0
Q ss_pred cChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH---------------HHHHHHhcCCCC--C
Q 043805 258 MGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF---------------TQLENLVGGSDK--F 320 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~l~~~~~~--~ 320 (555)
.+ .....+. ....+...+.....+.+.+|+||+++... ..+..++..+.. .
T Consensus 252 -eL-------~~k~~Ge----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 -EL-------IQKYLGD----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -hh-------hhhhcch----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 00 0000000 01112222223334578899999985310 011222222211 1
Q ss_pred CCCceEEEEeCchhhhhh-----cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 321 SPGSRIIITTRDKRVLDK-----CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 321 ~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
..+..||+||.....+.. ......++++..+.++..++|..+...-..... -....++..+.|+-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 245678888765433222 123467899999999999999877633221111 11345666666543
No 123
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.98 E-value=0.00067 Score=69.66 Aligned_cols=238 Identities=18% Similarity=0.145 Sum_probs=130.3
Q ss_pred chhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCc
Q 043805 196 LNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGEN 275 (555)
Q Consensus 196 R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 275 (555)
|...+.++.+.+... ..+++|.|+.++|||||++.+.....+. .+++...........+. +.+.
T Consensus 22 ~~~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~----d~~~------ 85 (398)
T COG1373 22 RRKLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELL----DLLR------ 85 (398)
T ss_pred HHhhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHH----HHHH------
Confidence 334555555555422 2299999999999999997776665444 45544221111111111 1111
Q ss_pred cCCCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhhhhh------cCCCeEEEeec
Q 043805 276 LKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRVLDK------CGVDNIFEVKG 349 (555)
Q Consensus 276 ~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~------~~~~~~~~l~~ 349 (555)
.+.+.-..++.+++||.+.. ...|...+..+...++. .+++|+-+...... .+....+++-|
T Consensus 86 ----------~~~~~~~~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 86 ----------AYIELKEREKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred ----------HHHHhhccCCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 11111112678999999988 77777776666554444 78888876544322 13456789999
Q ss_pred CChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCCCccHHHHHHHhH
Q 043805 350 LQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQKSKQQWEDKLHNLKLISEPSIYKVLKISY 429 (555)
Q Consensus 350 L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~~~~~~l~~l~~~~~~~l~~~l~~s~ 429 (555)
|+..|-..+..... ... .... .-+-.-.+||.|.++..-...-. ........+. .++....
T Consensus 154 lSF~Efl~~~~~~~----~~~-~~~~-~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~----------~Di~~~~- 214 (398)
T COG1373 154 LSFREFLKLKGEEI----EPS-KLEL-LFEKYLETGGFPESVKADLSEKK--LKEYLDTILK----------RDIIERG- 214 (398)
T ss_pred CCHHHHHhhccccc----chh-HHHH-HHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHH----------HHHHHHc-
Confidence 99999776643111 000 1111 22233457999988754222110 0000011100 0111111
Q ss_pred hcCC-HhhHHHHhhhc-cccCccchhhhHhhh-cCC-ccHHHHHHHHHhccceeE
Q 043805 430 DELN-SEEKEIFLDIA-CFFNGEYIDFVTRIQ-DDP-MSIRDRLNILIDKSLITI 480 (555)
Q Consensus 430 ~~L~-~~~~~~l~~la-~f~~~~~~~~l~~~~-~~~-~~~~~~l~~L~~~sLl~~ 480 (555)
...+ ...++++..++ -.+..++...+...+ +-. ......++.|.+.-++..
T Consensus 215 ~~~~~~~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 215 KIENADLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred CcccHHHHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 0011 34555555554 445568888888888 444 677888888888888874
No 124
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.95 E-value=9.9e-05 Score=77.24 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=93.6
Q ss_pred CCCcccchhhHHHHHhh---hc-----ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChH
Q 043805 190 LDSFVGLNSRIEEMKSL---MC-----LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVI 261 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~---L~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 261 (555)
...+.|.+...+.+... +. .+-..++-+.++|++|+|||.+|+.++......| +......
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH--------
Confidence 35677876665555432 11 0112356799999999999999999998764321 1111100
Q ss_pred HHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHH-------------HHHHHhcCCCCCCCCceEEE
Q 043805 262 HVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFT-------------QLENLVGGSDKFSPGSRIII 328 (555)
Q Consensus 262 ~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~l~~~~~~~~~~~~ili 328 (555)
+.....+ .+...+...+...-...|++|++|+++.... .+..++..+.....+..||.
T Consensus 295 -----l~~~~vG----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 -----LFGGIVG----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred -----hcccccC----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0000000 0111122222223335789999999964110 11222322222234556667
Q ss_pred EeCchhh-----hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 329 TTRDKRV-----LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 329 TsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
||.+... .........+.++..+.++-.++|..++....... ........+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 7765432 12123456789999999999999988774322111 01122456666666654
No 125
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00047 Score=68.24 Aligned_cols=170 Identities=10% Similarity=0.117 Sum_probs=97.7
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC---ceEEEEechhhccccChHHHHHHHHHHH------
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ---GKCFVADVREESNKMGVIHVRDEVISRV------ 271 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~------ 271 (555)
+.|.+.+..+ .-+....++|+.|+||+++|..++..+-..-+ ..|-. -...+.+....
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~------------C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQ------------CHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC------------CHHHHHHhcCCCCCEEE
Confidence 4455555422 22568889999999999999999986532211 00000 00000000000
Q ss_pred -hC-CccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhh-cCC
Q 043805 272 -LG-ENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDK-CGV 341 (555)
Q Consensus 272 -~~-~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~-~~~ 341 (555)
.. ....+..+++.+ +.+.+ .++.-++|+|+++. .......|+..+...+++..+|++|.+. .+++. ...
T Consensus 79 i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 79 LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 00 001122333332 22222 24456888999965 2456777777777666777777777654 33333 334
Q ss_pred CeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 342 DNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 342 ~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
...+.+.+++.+++.+.+..... .+ ...+..++..++|.|+..
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~-----~~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS-----AE--ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc-----cC--hHHHHHHHHHcCCCHHHH
Confidence 67899999999999999987641 11 123566788899999633
No 126
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.90 E-value=0.00019 Score=72.48 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=90.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
....+.|+|+.|.|||.|++.+++......+...++. . ........++..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~~--------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRDN--------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHhh--------hHHHHHHhh-
Confidence 3678999999999999999999999887776443333 1 1122223333332211 112222333
Q ss_pred cCceEEEEeCCCC---cHHHHHHHhcCCCCC-CCCceEEEEeCch---------hhhhhcCCCeEEEeecCChHHHHHHH
Q 043805 293 RIKVLIVLDDVHD---GFTQLENLVGGSDKF-SPGSRIIITTRDK---------RVLDKCGVDNIFEVKGLQHSKALELF 359 (555)
Q Consensus 293 ~~~~LlVlDdv~~---~~~~~~~l~~~~~~~-~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Ll 359 (555)
.-=++++||++. .....+.+...++.. ..|-.||+|++.. .+.+.+..+..+++.+++.+.-.+++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 233899999943 011123333222211 1344899998643 23344456678999999999999999
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhcCC
Q 043805 360 CRKAFRQNNRSHDLLELSQEVVCYADGN 387 (555)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (555)
...+-..... ..+++..-|++....+
T Consensus 254 ~kka~~~~~~--i~~ev~~~la~~~~~n 279 (408)
T COG0593 254 RKKAEDRGIE--IPDEVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHhcCCC--CCHHHHHHHHHHhhcc
Confidence 9876332222 2234555555554444
No 127
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00043 Score=69.19 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=97.8
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC---------------------CCceEEEEechhhcccc
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD---------------------FQGKCFVADVREESNKM 258 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~ 258 (555)
-++|.+.+..+ .-+....++|+.|+||+++|..++..+-.. .+...++... .
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~----~-- 83 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE----K-- 83 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc----c--
Confidence 34455555422 236688899999999999999999865321 1111111100 0
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD 332 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~ 332 (555)
....+..+++.+ +.+.+ .++.-++|+|+++. .......|+..+...+++..+|++|.+
T Consensus 84 ---------------~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 84 ---------------GKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred ---------------ccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 000122223322 22222 24566999999964 245667777777666677777777765
Q ss_pred h-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 333 K-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 333 ~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
. .+++. ......+.+.+++.+++.+.+.... ..+ .+.+..++..++|.|...
T Consensus 148 ~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~----~~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 148 PARLLATLRSRCRLHYLAPPPEQYALTWLSREV----TMS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred hhhChHHHHhccccccCCCCCHHHHHHHHHHcc----CCC---HHHHHHHHHHcCCCHHHH
Confidence 4 34433 3345678999999999999887642 111 233677899999999643
No 128
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00013 Score=73.89 Aligned_cols=131 Identities=21% Similarity=0.225 Sum_probs=77.9
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
.+...+++.|++|+|||+||.+++.. ..|+.+-.+. ...--++..-.+ ...+.......-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaK--------------c~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAK--------------CAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHH--------------HHHHHHHHHHhh
Confidence 34667889999999999999999853 5677665543 100000000000 001111122223
Q ss_pred ccCceEEEEeCCCCc--------------HHHHHHHhcCCCCCCCCceEEEEeCchhhhhhcC----CCeEEEeecCCh-
Q 043805 292 QRIKVLIVLDDVHDG--------------FTQLENLVGGSDKFSPGSRIIITTRDKRVLDKCG----VDNIFEVKGLQH- 352 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~--------------~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~----~~~~~~l~~L~~- 352 (555)
+..--+||+||++.. ...+..++...+..+...-|+-||....++..++ ....+.++.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 334468999999651 2233344555555455666777888788887775 345789999987
Q ss_pred HHHHHHHHHH
Q 043805 353 SKALELFCRK 362 (555)
Q Consensus 353 ~ea~~Ll~~~ 362 (555)
++..+.++..
T Consensus 676 ~~~~~vl~~~ 685 (744)
T KOG0741|consen 676 EQLLEVLEEL 685 (744)
T ss_pred HHHHHHHHHc
Confidence 6777777654
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00032 Score=73.00 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=114.6
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC----C--ceEEEEechhhccccChH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF----Q--GKCFVADVREESNKMGVI 261 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~--~~~~~~~~~~~~~~~~~~ 261 (555)
...+.++|-+.....|.+.+..+. -...-..+|+.|+||||+|+-++..+-..- . ..|..+ ...... ...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g-~~~ 88 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG-SLI 88 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC-Ccc
Confidence 445678999999999999987432 245677999999999999999998653221 0 001000 000000 000
Q ss_pred HHHHHHHHHHhCCccCCCCCchhHHHHHHh----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchhh-
Q 043805 262 HVRDEVISRVLGENLKIGTPTIPQNIRKRL----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKRV- 335 (555)
Q Consensus 262 ~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~~- 335 (555)
++.. + +.....+.+++.....+.. .++.-+.|+|+|+. +...+..|+..+.....++.+|+.|.+..-
T Consensus 89 DviE--i----DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 89 DVIE--I----DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred cchh--h----hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 0000 0 0000112333332222211 24556999999975 256688888888777788888877776522
Q ss_pred -hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 336 -LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 336 -~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
.......+.+.+..++.++....+...+... .....++....|++..+|..
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E--~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKE--GINIEEDALSLIARAAEGSL 214 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhc--CCccCHHHHHHHHHHcCCCh
Confidence 2223456789999999999999998887332 22334566777788877754
No 130
>PRK08116 hypothetical protein; Validated
Probab=97.86 E-value=9.7e-05 Score=71.57 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=55.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRI 294 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~ 294 (555)
..+.|+|.+|+|||.||..+++.+..+...++++. ...++..+........ ..-...+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc-----cccHHHHHHHhcCC
Confidence 45889999999999999999998876544455543 2223333332222110 11122233445444
Q ss_pred ceEEEEeCCC--Cc-HHHHHHHhcCCCC-CCCCceEEEEeCc
Q 043805 295 KVLIVLDDVH--DG-FTQLENLVGGSDK-FSPGSRIIITTRD 332 (555)
Q Consensus 295 ~~LlVlDdv~--~~-~~~~~~l~~~~~~-~~~~~~iliTsR~ 332 (555)
+ ||||||+. .. ......+...+.. ...+..+|+||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4 89999993 21 1112223222211 1245578888864
No 131
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00025 Score=71.10 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=89.7
Q ss_pred Cccc-chhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC---------------------CCceEEEE
Q 043805 192 SFVG-LNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD---------------------FQGKCFVA 249 (555)
Q Consensus 192 ~fvG-R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~ 249 (555)
..+| -+...+.|...+..+ .-+....++|+.|+|||++|..+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 667777888777532 236678999999999999999999875321 11111111
Q ss_pred echhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHH----hccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCc
Q 043805 250 DVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKR----LQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGS 324 (555)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~----l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~ 324 (555)
. .. ..+..+++.+..... ..+.+-++|+|+++. .......|+..+...++++
T Consensus 85 ~----~~-------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~ 141 (329)
T PRK08058 85 P----DG-------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGT 141 (329)
T ss_pred c----cc-------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCc
Confidence 0 00 011112222221111 123456899999965 2445667777776656777
Q ss_pred eEEEEeCchh-hhh-hcCCCeEEEeecCChHHHHHHHHHH
Q 043805 325 RIIITTRDKR-VLD-KCGVDNIFEVKGLQHSKALELFCRK 362 (555)
Q Consensus 325 ~iliTsR~~~-~~~-~~~~~~~~~l~~L~~~ea~~Ll~~~ 362 (555)
.+|++|.+.. +.+ -......+++.+++.++..+.+...
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7777776542 222 2235678999999999998888653
No 132
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=0.0002 Score=76.91 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=43.0
Q ss_pred CCCCCCcccchhhHHHHHhhhcccC---CCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLES---HDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
|...+.++|.+..++++..++.... ...++++|+|++|+||||++..++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556789999999999999886322 2346799999999999999999987653
No 133
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.84 E-value=0.00036 Score=68.27 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=97.7
Q ss_pred CCCcccchhhHHHHHhhhcccCCC-eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHH
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHD-VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVI 268 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 268 (555)
.+.|.+|+.++..|..++...+.. +..|.|+|.+|.|||.+.+++.+... ...+|+.++ +......++..++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~----ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCV----ECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehH----HhccHHHHHHHHH
Confidence 457999999999999999755443 45568999999999999999998763 346788744 3445566677777
Q ss_pred HHHh-CCccCCCC----C---chhHHHHH--Hhc--cCceEEEEeCCCCcHHH-----HHHHh---cCCCCCCCCceEEE
Q 043805 269 SRVL-GENLKIGT----P---TIPQNIRK--RLQ--RIKVLIVLDDVHDGFTQ-----LENLV---GGSDKFSPGSRIII 328 (555)
Q Consensus 269 ~~~~-~~~~~~~~----~---~l~~~l~~--~l~--~~~~LlVlDdv~~~~~~-----~~~l~---~~~~~~~~~~~ili 328 (555)
.+.. .+..+... + .....+.+ ... ++.++|||||++. ... +..++ ..++. +. ..|+
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~-lrD~~a~ll~~l~~L~el~~~--~~-i~ii 153 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA-LRDMDAILLQCLFRLYELLNE--PT-IVII 153 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh-hhccchHHHHHHHHHHHHhCC--Cc-eEEE
Confidence 7764 22222111 1 11112222 112 3589999999965 222 22222 11211 33 3334
Q ss_pred EeCch---hhhhhcC--CCeEEEeecCChHHHHHHHHHHh
Q 043805 329 TTRDK---RVLDKCG--VDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 329 TsR~~---~~~~~~~--~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
++-.. ......+ ...++..+..+.+|..+++.+.-
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 33321 1121122 22356778889999998886643
No 134
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.81 E-value=0.00046 Score=63.34 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=43.4
Q ss_pred CCCCCCcccchhhHHHHHhhhc--ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCc
Q 043805 187 STDLDSFVGLNSRIEEMKSLMC--LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQG 244 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 244 (555)
+.....++|-+...+.|.+.-. ...-...-|.+||..|+|||+|++++...+...+..
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3445678999988888866332 122235578899999999999999999988877655
No 135
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0014 Score=64.73 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=97.3
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC--------------------CCceEEEEechhhccccC
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD--------------------FQGKCFVADVREESNKMG 259 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~~~~~~ 259 (555)
-+.|.+.+..+ .-+..+.++|+.|+||+++|..+++.+-.. .+...++....
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~------- 83 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK------- 83 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-------
Confidence 34444444322 236689999999999999999999865321 11112221000
Q ss_pred hHHHHHHHHHHHhCCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 260 VIHVRDEVISRVLGENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
....+..+++.+ +.+.+ .++.-++|+|+++. .......|+..+...++++.+|++|.+.
T Consensus 84 --------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 84 --------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred --------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 000112222221 22222 23456899999965 2456677777776666777777766654
Q ss_pred -hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 334 -RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 334 -~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
.+++. ......+.+.+++.+++.+.+.... . . ....++..++|.|+....+
T Consensus 149 ~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 149 KRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 33333 3456789999999999999997642 1 1 1346788999999876554
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=97.79 E-value=0.001 Score=65.22 Aligned_cols=131 Identities=14% Similarity=0.191 Sum_probs=72.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC-C-CceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD-F-QGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
..+.++|++|+|||++|+.+++..... + ...-|+. .+ .. .+.....+.. .......+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~----~l~~~~~g~~----~~~~~~~l~~a-- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RD----DLVGQYIGHT----APKTKEVLKKA-- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HH----HHHHHHhccc----hHHHHHHHHHc--
Confidence 358899999999999999998865322 1 1111322 01 01 1222221111 01111122221
Q ss_pred cCceEEEEeCCCC----------cHHHHHHHhcCCCCCCCCceEEEEeCchhhhh--------hcCCCeEEEeecCChHH
Q 043805 293 RIKVLIVLDDVHD----------GFTQLENLVGGSDKFSPGSRIIITTRDKRVLD--------KCGVDNIFEVKGLQHSK 354 (555)
Q Consensus 293 ~~~~LlVlDdv~~----------~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~--------~~~~~~~~~l~~L~~~e 354 (555)
..-+|+||+++. ..+....|...+......+.||+++....... .......+.+++++.+|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 235999999964 12334455554444345667777765332210 01234579999999999
Q ss_pred HHHHHHHHhh
Q 043805 355 ALELFCRKAF 364 (555)
Q Consensus 355 a~~Ll~~~~~ 364 (555)
..+++...+-
T Consensus 201 l~~I~~~~l~ 210 (287)
T CHL00181 201 LLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHH
Confidence 9999988873
No 137
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.78 E-value=0.00029 Score=78.60 Aligned_cols=174 Identities=20% Similarity=0.208 Sum_probs=95.7
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccC
Q 043805 191 DSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMG 259 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 259 (555)
..+.|.+...+.|.+.+.. +-..++-+.++|++|+|||+||+.++......| +.+. ..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GP------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH-------
Confidence 4567877777777665431 112345688999999999999999998765332 1111 00
Q ss_pred hHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-------------HHHHHHHhcCCCC--CCCCc
Q 043805 260 VIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-------------FTQLENLVGGSDK--FSPGS 324 (555)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~~l~~~~~~--~~~~~ 324 (555)
+++....+. ....+...+...-...+.+|+||+++.. ...+..++..+.. ...+.
T Consensus 522 ------~l~~~~vGe----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ------EILSKWVGE----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ------HHhhcccCc----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111111111 1112222233334467899999998541 0123334433321 12455
Q ss_pred eEEEEeCchhhhh-----hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 325 RIIITTRDKRVLD-----KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 325 ~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
.||.||..+..+. .......+.++..+.++-.++|.....+..... ......+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCC
Confidence 5666665443221 113456789999999999999876653221111 111456777777754
No 138
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00043 Score=75.06 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=88.3
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CC-----ceEEEEechhhccccChH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQ-----GKCFVADVREESNKMGVI 261 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~ 261 (555)
...++.+||+.|++++.+.|.......+ .++|.+|+|||+++.-++.++... .| ..++-.++...-.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA----- 239 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA----- 239 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc-----
Confidence 3456799999999999999975433322 477999999999999999987543 22 1222211111100
Q ss_pred HHHHHHHHHHhCCcc-CCCCCchhHHHHHHhccCceEEEEeCCCCc----------HHHHHHHhcCCCCCCCCceEEEEe
Q 043805 262 HVRDEVISRVLGENL-KIGTPTIPQNIRKRLQRIKVLIVLDDVHDG----------FTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 262 ~~~~~ll~~~~~~~~-~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
+..- +...+.+...+.+.-...+++|++|.++.. .+....|.+.+.. +.--+|-.||
T Consensus 240 -----------GakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 240 -----------GAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred -----------cccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 1000 101111222222222345899999999641 2223333444432 2222345566
Q ss_pred Cchhh------hhhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 331 RDKRV------LDKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 331 R~~~~------~~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
-++.- .......+.+.+...+.+++.++++...
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 54311 1111256789999999999999886543
No 139
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.77 E-value=7.4e-05 Score=71.22 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=55.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc-CCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCC-------CchhH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR-DFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGT-------PTIPQ 285 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-------~~l~~ 285 (555)
...++|.|++|+|||||++.+++.+.. +|+..+|+..... ....+.++++.+...+.....+... ..+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999987754 5778888774322 2245666666662222211111111 01111
Q ss_pred HHHHH-hccCceEEEEeCCCC
Q 043805 286 NIRKR-LQRIKVLIVLDDVHD 305 (555)
Q Consensus 286 ~l~~~-l~~~~~LlVlDdv~~ 305 (555)
..... -.+++++|++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 11211 246899999999965
No 140
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00064 Score=71.51 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=88.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC-ceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ-GKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
.+.|.|.|+.|+|||+|++++++.+..... .+.++.+- .. ....+..++..+ ...+..++.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs-~l-~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS-TL-DGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEech-hc-cchhHHHHHHHH----------------HHHHHHHHh
Confidence 567999999999999999999998764422 22333211 11 111222222222 122336677
Q ss_pred cCceEEEEeCCCCcHH--------------HHH----HHhcCCCCCCCCceEEEEeCchhhhh-----hcCCCeEEEeec
Q 043805 293 RIKVLIVLDDVHDGFT--------------QLE----NLVGGSDKFSPGSRIIITTRDKRVLD-----KCGVDNIFEVKG 349 (555)
Q Consensus 293 ~~~~LlVlDdv~~~~~--------------~~~----~l~~~~~~~~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~ 349 (555)
..|-++||||++.... .+. +........+....+|.|.....-+. ..-......|++
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 8899999999964100 011 11111122223334555555432111 111335678999
Q ss_pred CChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC-chHHHHH
Q 043805 350 LQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN-PLALEVL 394 (555)
Q Consensus 350 L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 394 (555)
+...+-.++++...... . .....+...-+..+|+|. |.-++++
T Consensus 573 p~~~~R~~IL~~~~s~~-~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKN-L-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhh-h-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 99998888887766221 1 222333445588888886 4444444
No 141
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0019 Score=64.55 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=60.9
Q ss_pred CceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCc-hhhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCC
Q 043805 294 IKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRD-KRVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRS 370 (555)
Q Consensus 294 ~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~ 370 (555)
+.-++|+|+++. .......|+..+...++++.+|++|.+ ..+++. ......+.+.+++.++..+.+.... . .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 455889999964 355667777777666677766666655 444433 3345789999999999999997752 1 1
Q ss_pred hhHHHHHHHHHHHhcCCchHHHHH
Q 043805 371 HDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 371 ~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
+ ...++..++|.|+....+
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999754433
No 142
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.74 E-value=0.00069 Score=66.95 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc-c-cChHHHHHHHHHHHhCCccCCCCCchhHHHHH
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN-K-MGVIHVRDEVISRVLGENLKIGTPTIPQNIRK 289 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~ 289 (555)
..++.++|+|++|+|||.+|+.++..+...| +-+. ..+... . -.....+++++... .+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~A----------------~~ 205 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYREA----------------AD 205 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHHH----------------HH
Confidence 3478899999999999999999999876442 2221 111110 0 01122222222211 11
Q ss_pred H--hccCceEEEEeCCCCcH-----------HHH--HHHhcCC--------------CCCCCCceEEEEeCchhhhhh--
Q 043805 290 R--LQRIKVLIVLDDVHDGF-----------TQL--ENLVGGS--------------DKFSPGSRIIITTRDKRVLDK-- 338 (555)
Q Consensus 290 ~--l~~~~~LlVlDdv~~~~-----------~~~--~~l~~~~--------------~~~~~~~~iliTsR~~~~~~~-- 338 (555)
. -.+++++|++|+++... .++ ..|+..+ .....+..||.||-++..+..
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 1 13579999999996410 111 2333211 112356778888865533211
Q ss_pred --c-CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch
Q 043805 339 --C-GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL 389 (555)
Q Consensus 339 --~-~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 389 (555)
- ..... +...+.++-.++++.+.-. .... .....+|++...|-|+
T Consensus 286 lRpGRfDk~--i~lPd~e~R~eIL~~~~r~-~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEKF--YWAPTREDRIGVVHGIFRD-DGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCce--eCCCCHHHHHHHHHHHhcc-CCCC---HHHHHHHHHcCCCCCc
Confidence 1 12222 3445666667777665522 2221 2446667777777765
No 143
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.74 E-value=0.00028 Score=78.75 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=93.9
Q ss_pred CCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNK 257 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 257 (555)
..+.+.|.+..++++.+.+.. +-..++.+.|+|++|+|||+||+.+++.....| +.+. .......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 345588999999998876631 112346788999999999999999998764332 2222 1000000
Q ss_pred cChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhcCCCCCC-CCc
Q 043805 258 MGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVGGSDKFS-PGS 324 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~~~~~~-~~~ 324 (555)
.. ......+...+.......+.+|+||+++.. ......++..+.... .+.
T Consensus 252 -------------~~----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 252 -------------YY----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -------------cc----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 00 000111222233344556789999998541 112233333322111 222
Q ss_pred eEEE-EeCchh-hhhhc----CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 325 RIII-TTRDKR-VLDKC----GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 325 ~ili-TsR~~~-~~~~~----~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
.++| ||.... +-... .....+.++..+.++-.+++........... ......+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 3344 444332 11111 1345688888899988888886552211111 122566777777764
No 144
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00021 Score=68.28 Aligned_cols=36 Identities=17% Similarity=0.387 Sum_probs=29.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh----hcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI----SRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~----~~~f~~~~~~~ 249 (555)
.|+|.++||||.|||+|++.+++.+ .+.|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 6899999999999999999999965 34466655554
No 145
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.72 E-value=6.4e-05 Score=74.99 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=56.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhc-CCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCC-------chh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISR-DFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTP-------TIP 284 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-------~l~ 284 (555)
..+..+|.|++|+|||||++++++.+.. +|+..+|+...++ .+..+.++++.+...+.....+.... ...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE--R~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC--chhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999997755 6888889875544 22345566666653222111111110 111
Q ss_pred HHHHHH-hccCceEEEEeCCCC
Q 043805 285 QNIRKR-LQRIKVLIVLDDVHD 305 (555)
Q Consensus 285 ~~l~~~-l~~~~~LlVlDdv~~ 305 (555)
+..... ..+++++|++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 111111 256899999999965
No 146
>PRK08181 transposase; Validated
Probab=97.72 E-value=6e-05 Score=72.65 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.-+.|+|++|+|||.||..+++.+......+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999988765544555554
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.72 E-value=0.0014 Score=73.77 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=39.1
Q ss_pred CCcccchhhHHHHHhhhcc-------cCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 191 DSFVGLNSRIEEMKSLMCL-------ESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
...+|.+..++.+.+.+.. .+....++.++||+|+|||.||+.++..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4789999999999887742 1112346889999999999999999987643
No 148
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00044 Score=71.51 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=98.5
Q ss_pred CCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccC
Q 043805 190 LDSFVGLNSRIEEMKSLMCL----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMG 259 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 259 (555)
...+=|.+..+.+|..++.. +-..++-|.++||+|+|||.||+.++.++.-.| +. .+.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isA--- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISA--- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecc---
Confidence 35677899999999887641 112467799999999999999999998765332 22 111
Q ss_pred hHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhcCCCC------CC
Q 043805 260 VIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVGGSDK------FS 321 (555)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~~~~------~~ 321 (555)
-+++....+. +...+.+.+.++...-|+++++|+++.. ...+.+|+..+.. .+
T Consensus 257 -----peivSGvSGE----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 257 -----PEIVSGVSGE----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred -----hhhhcccCcc----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 1222222221 3344555555666678999999999651 1123344433221 13
Q ss_pred CCceEEE-EeCchhhhhhc----CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC
Q 043805 322 PGSRIII-TTRDKRVLDKC----GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN 387 (555)
Q Consensus 322 ~~~~ili-TsR~~~~~~~~----~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (555)
.++.||- |+|...+-+.+ ...+.|.|.--+..+-.++|...+-+-.... . =...+|++.+-|.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~--~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-D--FDFKQLAKLTPGF 395 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-C--cCHHHHHhcCCCc
Confidence 3444443 34443222221 2456788888777776777766653222111 1 1145666666555
No 149
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.71 E-value=4e-05 Score=69.42 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=27.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..-+.|+|++|+|||.||..+++.+..+...+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356889999999999999999987766555566654
No 150
>PRK12377 putative replication protein; Provisional
Probab=97.68 E-value=0.00085 Score=63.94 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=29.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...+.|+|++|+|||+||..+++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999999998876655556654
No 151
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.67 E-value=0.00059 Score=60.84 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=74.5
Q ss_pred cchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc--------------------CCCceEEEEechhh
Q 043805 195 GLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR--------------------DFQGKCFVADVREE 254 (555)
Q Consensus 195 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--------------------~f~~~~~~~~~~~~ 254 (555)
|-+...+.|.+.+..+ .-+..+.++|+.|+||+++|..+++.+-. .++...++... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4566777777777532 22567899999999999999999986522 12333333200 00
Q ss_pred ccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 255 SNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 255 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
..... .+..+.+...+... -..+..-++|+||++. ..+....|+..+...+.++.+|++|.+.
T Consensus 79 ~~~i~-i~~ir~i~~~~~~~---------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 79 KKSIK-IDQIREIIEFLSLS---------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSBS-HHHHHHHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cchhh-HHHHHHHHHHHHHH---------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 00111 12222222222111 0123456999999965 3556667776666556788888888875
Q ss_pred h-hhh-hcCCCeEEEeecCC
Q 043805 334 R-VLD-KCGVDNIFEVKGLQ 351 (555)
Q Consensus 334 ~-~~~-~~~~~~~~~l~~L~ 351 (555)
. +++ -......+.+.+++
T Consensus 143 ~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHTTSEEEEE----
T ss_pred HHChHHHHhhceEEecCCCC
Confidence 3 222 22455677777764
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.64 E-value=0.0044 Score=70.25 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=40.2
Q ss_pred CCcccchhhHHHHHhhhcccC------C-CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 191 DSFVGLNSRIEEMKSLMCLES------H-DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~------~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..++|.+..++.+...+.... . ....+.+.|++|+|||++|+.++..+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 468999999999998876321 1 13568899999999999999999876443
No 153
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.64 E-value=0.0014 Score=63.46 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=21.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+.+.|.|++|+|||+||+.+++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4577999999999999999997553
No 154
>PRK10536 hypothetical protein; Provisional
Probab=97.62 E-value=0.00047 Score=65.13 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=74.1
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh-h-hcCCCceEEEEechhhcc-----ccChHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ-I-SRDFQGKCFVADVREESN-----KMGVIHV 263 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~~~~~ 263 (555)
..+.+|......+..++.. ...+.++|++|+|||+||..++.. + ...|...+.....-.... +-+..+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4577888888888888752 248999999999999999999874 3 333443333321110000 1111111
Q ss_pred ----HHHH---HHHHhCCcc-C----CCCCchhHHHHHHhccCc---eEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEE
Q 043805 264 ----RDEV---ISRVLGENL-K----IGTPTIPQNIRKRLQRIK---VLIVLDDVHD-GFTQLENLVGGSDKFSPGSRII 327 (555)
Q Consensus 264 ----~~~l---l~~~~~~~~-~----~~~~~l~~~l~~~l~~~~---~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~il 327 (555)
+..+ +..+.+... . .....+.-.-..++++++ -+||+|++.+ +..++..++..+ +.++++|
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEE
Confidence 1111 111111100 0 000111111124556654 4999999965 355566666554 5899999
Q ss_pred EEeCc
Q 043805 328 ITTRD 332 (555)
Q Consensus 328 iTsR~ 332 (555)
+|--.
T Consensus 208 ~~GD~ 212 (262)
T PRK10536 208 VNGDI 212 (262)
T ss_pred EeCCh
Confidence 98653
No 155
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.60 E-value=0.0022 Score=60.94 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=29.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...+.++|.+|+|||+|+..+++.+......++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 357889999999999999999998876555555553
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.60 E-value=0.0022 Score=72.50 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCcccchhhHHHHHhhhccc------CCC-eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 191 DSFVGLNSRIEEMKSLMCLE------SHD-VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..++|.+..++.+...+... .+. ...+.++|++|+|||+||+.++..+...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 46899999999998877521 111 2478899999999999999999866433
No 157
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.59 E-value=0.00019 Score=71.95 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=57.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCC-------chh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTP-------TIP 284 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-------~l~ 284 (555)
....++|+|++|+|||||+..+++.+... |+..+|+...++ .+..+.++++.++..+.....+.... .+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 35678999999999999999999987665 788888874422 23466677777644333222221111 111
Q ss_pred HHHHHH-hccCceEEEEeCCCC
Q 043805 285 QNIRKR-LQRIKVLIVLDDVHD 305 (555)
Q Consensus 285 ~~l~~~-l~~~~~LlVlDdv~~ 305 (555)
+..... -.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 111111 356899999999965
No 158
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.58 E-value=0.00058 Score=63.36 Aligned_cols=173 Identities=16% Similarity=0.192 Sum_probs=97.5
Q ss_pred CCcccchhhHHH---HHhhhcc----cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 191 DSFVGLNSRIEE---MKSLMCL----ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 191 ~~fvGR~~el~~---l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
+..||.+..... |...|.. +.-.++.|+.+|++|.|||.+|+.+++....-+ ... ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~v---------ka--- 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLV---------KA--- 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEe---------ch---
Confidence 456776655443 3334431 223578999999999999999999998754321 111 00
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-------------cHHHHHHHhcCCCC--CCCCceEEE
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-------------GFTQLENLVGGSDK--FSPGSRIII 328 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-------------~~~~~~~l~~~~~~--~~~~~~ili 328 (555)
.+++....++ +...+.+...+.-..-|+++.+|.++. ..+.+..|+..+.. .+.|+..|.
T Consensus 185 -t~liGehVGd----gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 185 -TELIGEHVGD----GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHHHHhhh----HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1122221111 122333333344455799999999865 23345666655432 235666666
Q ss_pred EeCchhhhhhc---CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC
Q 043805 329 TTRDKRVLDKC---GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN 387 (555)
Q Consensus 329 TsR~~~~~~~~---~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (555)
.|-++..+... .....++..-.+.+|-..++...+-.-..+. ..-.+.++.+++|.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCC
Confidence 66655443221 2335677778888998888888772211111 11145666666665
No 159
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00041 Score=73.28 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=88.9
Q ss_pred CcccchhhHHHHHhhhcc----cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 192 SFVGLNSRIEEMKSLMCL----ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
.-+|-++.-+++.+.|.. ..-..++++++||||+|||+|++.+++.+.+.|-.. - +++......+...-+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~-s---LGGvrDEAEIRGHRRTY 399 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI-S---LGGVRDEAEIRGHRRTY 399 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE-e---cCccccHHHhccccccc
Confidence 568888888888888762 223468999999999999999999999887776221 1 12222211111111111
Q ss_pred HHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-------c--HHHHHHHhcCCCC-C----------CCCceEE
Q 043805 268 ISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-------G--FTQLENLVGGSDK-F----------SPGSRII 327 (555)
Q Consensus 268 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-------~--~~~~~~l~~~~~~-~----------~~~~~il 327 (555)
+.. -+..+.+.+.+. +.++=|++||.++. + ...++.|-+..+. + -..+.+|
T Consensus 400 IGa--------mPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 400 IGA--------MPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ccc--------CChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 111 122233333222 33566888999853 0 1112222121110 0 1233344
Q ss_pred EEeCchh--hhhhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 328 ITTRDKR--VLDKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 328 iTsR~~~--~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.|+-+-. ..+.++...+++|.+.+.+|=.+.-.+++
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4443322 12334566899999999999998888776
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.55 E-value=0.0002 Score=61.82 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=27.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
+.+.|+|++|+||||++..++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5788999999999999999998877654334444
No 161
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.0014 Score=65.89 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=80.5
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC---------------------CceEEEEec
Q 043805 193 FVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF---------------------QGKCFVADV 251 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~ 251 (555)
++|-+.....+..+.......+..+.++|++|+|||++|..+++.+.... +....+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-- 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-- 80 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec--
Confidence 56667777777777653333455799999999999999999999875432 1222221
Q ss_pred hhhccccC---hHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEE
Q 043805 252 REESNKMG---VIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRII 327 (555)
Q Consensus 252 ~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~il 327 (555)
.+.... .....+.+........ ..++.-++++|+++. ..+....+...+........+|
T Consensus 81 --~s~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 --PSDLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred --ccccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 011111 1112222221111100 024567999999975 2344556666555555777777
Q ss_pred EEeCch-hhhhh-cCCCeEEEeecCChHHHH
Q 043805 328 ITTRDK-RVLDK-CGVDNIFEVKGLQHSKAL 356 (555)
Q Consensus 328 iTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~ 356 (555)
++|... .+... ......+.+.+.+..+..
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchHHHHH
Confidence 777643 33322 234456777774444333
No 162
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.53 E-value=0.0018 Score=72.25 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHhhhccc------CC-CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLE------SH-DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~------~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+|.+..++.+.+.+... .+ ....+.++||+|+|||.||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46789999989888877521 11 234678999999999999999998773
No 163
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.00019 Score=68.78 Aligned_cols=34 Identities=24% Similarity=0.128 Sum_probs=26.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCF 247 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 247 (555)
...+.|+|++|+|||+||..++.........+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3568999999999999999999876554333444
No 164
>PRK09183 transposase/IS protein; Provisional
Probab=97.51 E-value=0.00013 Score=70.31 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=25.7
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
..+.|+|++|+|||+||..++.........+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999999988754443334444
No 165
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00093 Score=69.19 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=80.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
+.-|+++||+|+|||-||+++++..+-+| +. ...+ +++....++ +...+...+.++-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is----VKGP--------ELlNkYVGE----SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS----VKGP--------ELLNKYVGE----SERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee----ecCH--------HHHHHHhhh----HHHHHHHHHHHhhcC
Confidence 55688999999999999999999877664 22 1111 222222222 112233333344456
Q ss_pred CceEEEEeCCCC------------cHHHHHHHhcCCCCC--CCCceEEEEeCchhh-----hhhcCCCeEEEeecCChHH
Q 043805 294 IKVLIVLDDVHD------------GFTQLENLVGGSDKF--SPGSRIIITTRDKRV-----LDKCGVDNIFEVKGLQHSK 354 (555)
Q Consensus 294 ~~~LlVlDdv~~------------~~~~~~~l~~~~~~~--~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~e 354 (555)
.|++|+||.++. ....+..|+..+... ..|+.||-.|-.+++ +.....+..+-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 799999999965 122355666554322 246666666644433 2222345678888889999
Q ss_pred HHHHHHHHhh
Q 043805 355 ALELFCRKAF 364 (555)
Q Consensus 355 a~~Ll~~~~~ 364 (555)
-..+++...-
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 9999988873
No 166
>PRK06921 hypothetical protein; Provisional
Probab=97.48 E-value=0.00024 Score=68.71 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=29.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
...+.++|++|+|||+|+..+++.+... ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987765 44556655
No 167
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.42 E-value=0.00044 Score=63.99 Aligned_cols=108 Identities=14% Similarity=0.252 Sum_probs=61.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRI 294 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~ 294 (555)
+++.|+|+.|+||||++..++..+.......++... .+......-...++.+ ...+.......+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e----~~~E~~~~~~~~~i~q---~~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE----DPIEFVHESKRSLINQ---REVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc----CCccccccCccceeee---cccCCCccCHHHHHHHHhcCC
Confidence 478999999999999999988877654343444321 1100000000000000 001112345667778888888
Q ss_pred ceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 295 KVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
+=++++|++.+ .+.+...+.... .|..++.|+-..
T Consensus 75 pd~ii~gEird-~e~~~~~l~~a~---~G~~v~~t~Ha~ 109 (198)
T cd01131 75 PDVILVGEMRD-LETIRLALTAAE---TGHLVMSTLHTN 109 (198)
T ss_pred cCEEEEcCCCC-HHHHHHHHHHHH---cCCEEEEEecCC
Confidence 99999999976 555555443322 344566666544
No 168
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.41 E-value=0.0027 Score=68.34 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=41.3
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.....++|....++++.+.+..-......|.|+|++|+|||++|+.+.+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 3456899999999999887763333345688999999999999999987644
No 169
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.39 E-value=0.0015 Score=69.80 Aligned_cols=49 Identities=31% Similarity=0.540 Sum_probs=38.9
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+.++|.+..++.+...+... ....+.|+|++|+|||++|+.+.+..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44467999999999998876532 33567899999999999999987654
No 170
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.38 E-value=0.0036 Score=62.01 Aligned_cols=48 Identities=27% Similarity=0.176 Sum_probs=34.5
Q ss_pred EEEeecCChHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHhcCCchHH
Q 043805 344 IFEVKGLQHSKALELFCRKAFRQNNRS-HDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 344 ~~~l~~L~~~ea~~Ll~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal 391 (555)
.+++++++.+|+..++.-..-.+-... ...+...+++.-..+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988763332222 233455667777779999754
No 171
>PRK04132 replication factor C small subunit; Provisional
Probab=97.38 E-value=0.0054 Score=68.05 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=92.7
Q ss_pred EEe--cCcchhHHHHHHHHHhh-hcCCCc-eEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccC
Q 043805 219 IWG--MGGVGKTTIASVVFHQI-SRDFQG-KCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRI 294 (555)
Q Consensus 219 I~G--~~GiGKTtLa~~~~~~~-~~~f~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~ 294 (555)
+.| |.++||||+|..+++.+ .+.+.. .+-+. .+...+. +..++++..+..... . -..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgi-d~IR~iIk~~a~~~~-~------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGI-NVIREKVKEFARTKP-I------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccH-HHHHHHHHHHHhcCC-c------------CCCC
Confidence 347 88999999999999886 322222 22332 1221222 234444433221100 0 0123
Q ss_pred ceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCCh
Q 043805 295 KVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSH 371 (555)
Q Consensus 295 ~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~ 371 (555)
.-++|||+++. ..++...|+..+......+++|+++.+. .+... ......+.+.+++.++..+.+...+-.... .
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~ 708 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--E 708 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--C
Confidence 46999999976 2345666766666555677777766654 22222 234678999999999999888876632221 1
Q ss_pred hHHHHHHHHHHHhcCCchHHHH
Q 043805 372 DLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 372 ~~~~~~~~i~~~~~G~PLal~~ 393 (555)
..++....|+..++|.+.....
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 2255788999999998854433
No 172
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.37 E-value=0.0028 Score=63.43 Aligned_cols=47 Identities=23% Similarity=0.168 Sum_probs=35.2
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 193 FVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
++|+...++++.+.+..-......|.|+|.+|+||+++|+.+.+.-.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 47888888887776653333345689999999999999998876443
No 173
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.37 E-value=0.0012 Score=68.04 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..++||++.++.+...+..+ .-|.|.|++|+|||+||+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 46999999999998877533 35889999999999999999987654
No 174
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0019 Score=64.34 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=50.6
Q ss_pred ceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchh-hhhh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCCh
Q 043805 295 KVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKR-VLDK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSH 371 (555)
Q Consensus 295 ~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~ 371 (555)
+-++|+|+++. +......++..+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+.... . ..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-AE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-Cc
Confidence 44556788854 23444555444433335566777777653 3322 2345678999999999999986642 1 11
Q ss_pred hHHHHHHHHHHHhcCCchH
Q 043805 372 DLLELSQEVVCYADGNPLA 390 (555)
Q Consensus 372 ~~~~~~~~i~~~~~G~PLa 390 (555)
. . ..+..++|.|+.
T Consensus 189 ~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 189 P-E----ERLAFHSGAPLF 202 (325)
T ss_pred H-H----HHHHHhCCChhh
Confidence 1 1 123568899964
No 175
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.34 E-value=0.0023 Score=61.83 Aligned_cols=171 Identities=18% Similarity=0.133 Sum_probs=96.2
Q ss_pred CCCcccchhhHHHHHhhhcc--cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 190 LDSFVGLNSRIEEMKSLMCL--ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
-..|+|-.++-..+..++.. -.+....+.|.||.|+|||.|......+. +.+.-...+..+.+.-.. -.-.+..+
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~--dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQT--DKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchh--hHHHHHHH
Confidence 35699999999999998862 12345678899999999999998877763 334444444433322221 11122333
Q ss_pred HHHHhCCcc-----CCCCCchhHHHHHHhcc------CceEEEEeCCCCcHH-----HHHHHhcC-CCCCCCCceEEEEe
Q 043805 268 ISRVLGENL-----KIGTPTIPQNIRKRLQR------IKVLIVLDDVHDGFT-----QLENLVGG-SDKFSPGSRIIITT 330 (555)
Q Consensus 268 l~~~~~~~~-----~~~~~~l~~~l~~~l~~------~~~LlVlDdv~~~~~-----~~~~l~~~-~~~~~~~~~iliTs 330 (555)
.+++..... ..+..+....+...|.. .++++|+|+++--.. .+-.+... .....|-|-|.+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 333322111 11233333444444432 368999998854111 11122211 11223667778999
Q ss_pred Cchh-------hhhhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 331 RDKR-------VLDKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 331 R~~~-------~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
|-.. |-+......++-+++++.++-..+++..+
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9542 22222333456667788889899988876
No 176
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.34 E-value=0.0071 Score=60.57 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
+.++|+...++++.+.+.........|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999998877643334456889999999999999987653
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.34 E-value=0.00083 Score=61.29 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=39.2
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 189 DLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.....||-++-++.|.-.-. ++..+-+.|.||||+||||-+..+++.+-
T Consensus 25 ~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 34568999999998886654 33466788999999999999999998753
No 178
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00078 Score=70.99 Aligned_cols=51 Identities=27% Similarity=0.421 Sum_probs=42.2
Q ss_pred CcccchhhHHHHHhhhc----ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 192 SFVGLNSRIEEMKSLMC----LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
.-+|.++..+++.+.+. .++-+.++++.+||||+|||++++.++..+.+.|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 45788888888888775 2344578999999999999999999999887665
No 179
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.33 E-value=0.0014 Score=73.45 Aligned_cols=159 Identities=17% Similarity=0.190 Sum_probs=82.8
Q ss_pred CcccchhhHHHHHhhhcc----cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 192 SFVGLNSRIEEMKSLMCL----ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
..+|.+...+.+.+++.. .....+.++++|++|+|||++|+.++..+...|-. +. .... ... ..+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~---i~-~~~~---~~~----~~i 389 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVR---FS-LGGV---RDE----AEI 389 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEE---Ee-CCCc---ccH----HHH
Confidence 467888888888776541 12234579999999999999999999987544311 11 1100 011 111
Q ss_pred HHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH-----HHHHHHhcCCCC--------C-------CCCceEE
Q 043805 268 ISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF-----TQLENLVGGSDK--------F-------SPGSRII 327 (555)
Q Consensus 268 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~-----~~~~~l~~~~~~--------~-------~~~~~il 327 (555)
... .....+.....+...+.......+ +|+||+++... +....|+..+.. . ..+..+|
T Consensus 390 ~g~-~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 390 RGH-RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred cCC-CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 100 000001123334444443333334 78999996511 011222222210 0 0234445
Q ss_pred EEeCchhhh--hhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 328 ITTRDKRVL--DKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 328 iTsR~~~~~--~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.||...... ........+++.+++.++-.+++...+
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 555432111 112344688999999999888887654
No 180
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0034 Score=69.41 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHhhhccc-------CCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLE-------SHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..++|.+..++.|...+... +.....+.++|++|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999998877521 11235788999999999999999998773
No 181
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.31 E-value=0.011 Score=59.26 Aligned_cols=45 Identities=16% Similarity=0.383 Sum_probs=35.7
Q ss_pred hhhHHHHHhhhcccC-CCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 197 NSRIEEMKSLMCLES-HDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 197 ~~el~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+...+.|.+.+...+ +.+.+|+|.|.-|+|||++...+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445566777776432 568899999999999999999999888766
No 182
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.30 E-value=0.0039 Score=70.47 Aligned_cols=117 Identities=13% Similarity=0.186 Sum_probs=64.9
Q ss_pred CCcccchhhHHHHHhhhccc------CCC-eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLE------SHD-VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
..++|.+..++.+...+... .+. ...+.++||+|+|||+||+.+++.+-......+-+. ..........
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~--- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTV--- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccH---
Confidence 56899999999998877521 111 345779999999999999999987643222222222 2222121111
Q ss_pred HHHHHHHHhCCccC-CCCCchhHHHHHHhccCc-eEEEEeCCCC-cHHHHHHHhcCC
Q 043805 264 RDEVISRVLGENLK-IGTPTIPQNIRKRLQRIK-VLIVLDDVHD-GFTQLENLVGGS 317 (555)
Q Consensus 264 ~~~ll~~~~~~~~~-~~~~~l~~~l~~~l~~~~-~LlVlDdv~~-~~~~~~~l~~~~ 317 (555)
..+.+...+ .+.+. ...+.+.++.+| .+++||+++. ..+....|+..+
T Consensus 585 -----~~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l 635 (821)
T CHL00095 585 -----SKLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL 635 (821)
T ss_pred -----HHhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh
Confidence 112222221 11111 123345555555 5899999964 234445555444
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0029 Score=68.76 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=76.0
Q ss_pred CCcccchhhHHHHHhhhccc-------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLE-------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
...+|.+..+..+.+.+... +.........||.|+|||.||++++..+-..-...+-+. +.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~-------- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYM-------- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHH--------
Confidence 46899999999998877521 223567778999999999999999987754323333332 22222
Q ss_pred HHHHHHHHhCCccCC-CCCchhHHHHHHhccCce-EEEEeCCCCc-HHHHHHHhcCCC
Q 043805 264 RDEVISRVLGENLKI-GTPTIPQNIRKRLQRIKV-LIVLDDVHDG-FTQLENLVGGSD 318 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~-~~~~l~~~l~~~l~~~~~-LlVlDdv~~~-~~~~~~l~~~~~ 318 (555)
-+.-.+.+.+.+++. +.++ -..|.+..+++|+ +|.||+++.. .+..+.|++.+.
T Consensus 562 EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 223345555555533 3333 4455588888887 8899999542 455566665554
No 184
>PTZ00494 tuzin-like protein; Provisional
Probab=97.29 E-value=0.019 Score=57.88 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=95.2
Q ss_pred CCCCCCCcccchhhHHHHHhhhcc-cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHH
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCL-ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
.+.....+|.|+.|-..+.+.|.. +...+++++++|.-|.|||+|.+.....- --..+++. ++. ..+.+
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VRg------~EDtL 435 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VGG------TEDTL 435 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ecC------CcchH
Confidence 355678899999998888888863 34458999999999999999999876542 23455554 222 22344
Q ss_pred HHHHHHHhCCccCC---CCCchhHHHHHH---hccCceEEEEe--CCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhhh
Q 043805 265 DEVISRVLGENLKI---GTPTIPQNIRKR---LQRIKVLIVLD--DVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRVL 336 (555)
Q Consensus 265 ~~ll~~~~~~~~~~---~~~~l~~~l~~~---l~~~~~LlVlD--dv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~ 336 (555)
+.+...++-...+. -.+.+.+..... ..++.-+||+- +-.+.......... +.....-|+|++----+.+.
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhhhc
Confidence 55666655443322 223333333322 23444455543 22221111111111 11112456777654332211
Q ss_pred ---hhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 337 ---DKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 337 ---~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
..++....|.+++|+.++|.++..+..
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111234568999999999999988765
No 185
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.28 E-value=0.0011 Score=66.30 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=57.9
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCce-EEEEechhhccccChHHHHHHHHHHHhCCccCCCC
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGK-CFVADVREESNKMGVIHVRDEVISRVLGENLKIGT 280 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 280 (555)
.+.+.+..- +..+.++|+|++|+|||||++.+++.+..+.+.+ +++..+ ......+.++++.+...+.....+...
T Consensus 122 RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI--gER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI--DERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe--cCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 355555422 2335678999999999999999999886654333 233322 233445566666666544432211111
Q ss_pred Cc------hhHHHHHHh--ccCceEEEEeCCCC
Q 043805 281 PT------IPQNIRKRL--QRIKVLIVLDDVHD 305 (555)
Q Consensus 281 ~~------l~~~l~~~l--~~~~~LlVlDdv~~ 305 (555)
.. ......+++ .+++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 111111222 46899999999954
No 186
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.24 E-value=0.011 Score=63.28 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=45.5
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 189 DLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
....++|+...++++.+.+..-......|.|+|.+|+|||.+|+.+.+.........+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~ 245 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLN 245 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEE
Confidence 3567999999999998887644444567899999999999999999876543323334443
No 187
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.22 E-value=0.0011 Score=62.79 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=36.2
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|.+.|..+-....++.|+|++|+|||+|+.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344455433344679999999999999999999987766666777776
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.21 E-value=0.00074 Score=69.00 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=60.0
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc--CCCceEEEEechhhccccChHHHHHHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR--DFQGKCFVADVREESNKMGVIHVRDEVI 268 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~ll 268 (555)
...++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .+....|+. .....+...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI---- 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFI---- 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHh----
Confidence 4577788889998888753 346788999999999999999987743 233344443 22222222221
Q ss_pred HHHhCCccCC--CCCchhHHHHHHhc--cCceEEEEeCCCC
Q 043805 269 SRVLGENLKI--GTPTIPQNIRKRLQ--RIKVLIVLDDVHD 305 (555)
Q Consensus 269 ~~~~~~~~~~--~~~~l~~~l~~~l~--~~~~LlVlDdv~~ 305 (555)
........+. ....+.+.+.++.. +++++||+|+++.
T Consensus 243 ~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 243 QGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred cccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 1111110111 11223333333332 4689999999954
No 189
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0025 Score=63.37 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=57.6
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCC-
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKI- 278 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~- 278 (555)
..++.+.|..+--...+++|-|.||||||||..+++.++.... .+.|+.. ..+. ...+--..++.....+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~-~QiklRA~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESL-QQIKLRADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCH-HHHHHHHHHhCCCccceE
Confidence 4455555642222356899999999999999999999998776 6667651 1111 22222333443222221
Q ss_pred --CCCchhHHHHHHhccCceEEEEeCCC
Q 043805 279 --GTPTIPQNIRKRLQRIKVLIVLDDVH 304 (555)
Q Consensus 279 --~~~~l~~~l~~~l~~~~~LlVlDdv~ 304 (555)
....+...+...-..++-++|+|-+.
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 22223333333334688999999983
No 190
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.20 E-value=0.0021 Score=57.01 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=27.1
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.|+|++|+|||+++..++.........++|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 679999999999999999988766555566655
No 191
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.19 E-value=0.0017 Score=61.40 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=33.9
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------CceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 249 (555)
.|.++|..+-....++.|+|++|+|||+|+.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34444433333467999999999999999999987654444 4566765
No 192
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0023 Score=67.13 Aligned_cols=176 Identities=20% Similarity=0.213 Sum_probs=96.2
Q ss_pred CCCCccc-chhhHHHHHhhhc-----------ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 189 DLDSFVG-LNSRIEEMKSLMC-----------LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 189 ~~~~fvG-R~~el~~l~~~L~-----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
....=+| -++...+|.+... -+-..++-|.++||||+|||++|+.+++.....|-.+ ..
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------kg 501 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------KG 501 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------cC
Confidence 3333444 6665556654332 1224578899999999999999999998876554211 00
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhcCCCCCC--C
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVGGSDKFS--P 322 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~~~~~~--~ 322 (555)
.+++....+. +...+.+.+.++-+-.+.+|.||.++.. ...+..|+..+.-.. .
T Consensus 502 --------pEL~sk~vGe----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 502 --------PELFSKYVGE----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred --------HHHHHHhcCc----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 1122222221 1122333333343446799999998651 112445555444222 2
Q ss_pred CceEEEEe-Cchhh----hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 323 GSRIIITT-RDKRV----LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 323 ~~~iliTs-R~~~~----~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
++.||-.| |...+ +.....+..+.+++-+.+.-.++|+.++-.-..... -..++|++.+.|.-
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 33344333 32222 221235677888888888888999888733222111 12456777777764
No 193
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0024 Score=61.33 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=29.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...-+.++|++|+|||.||.++++.+....-.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4557889999999999999999999885444555554
No 194
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.17 E-value=0.0029 Score=66.79 Aligned_cols=51 Identities=29% Similarity=0.398 Sum_probs=39.3
Q ss_pred CCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL---ESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
....++--..-++++..||.. +....++++|+||+|+||||.++.+++.+.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334455566788899998873 223367999999999999999999998764
No 195
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.16 E-value=0.003 Score=55.53 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=27.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..|-|++..|.||||+|...+.+...+...+.++.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46788888899999999999987766655555544
No 196
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.15 E-value=0.0027 Score=64.34 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=35.2
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..|.+.|..+-....++.|.|++|+|||||+.+++.........++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444455422234579999999999999999999988766545566665
No 197
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.14 E-value=0.0015 Score=61.50 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=36.1
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..|...|..+-....++.|+|++|+|||+|+.+++.........++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433344679999999999999999999988765555666765
No 198
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.14 E-value=0.015 Score=64.67 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...++|+...++.+.+.+..-......|.|+|++|+|||.+|+.+.+.-.......+.+.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~ 434 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 434 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEe
Confidence 357999999999987766533333457889999999999999999875433323333443
No 199
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.14 E-value=0.0012 Score=73.52 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=85.4
Q ss_pred CcccchhhHHHHHhhhcc----cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 192 SFVGLNSRIEEMKSLMCL----ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
..+|.++..+.+.+++.. .......++++|++|+|||++++.++..+...|-. +. +..... ...+. ..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~-~~~~~d---~~~i~-g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MA-LGGVRD---EAEIR-GH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EE-cCCCCC---HHHhc-cc
Confidence 578999888888877752 12235679999999999999999999876544321 11 111111 10000 00
Q ss_pred HHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHHH-----HHHHhcCCCC---------------CCCCceEE
Q 043805 268 ISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQ-----LENLVGGSDK---------------FSPGSRII 327 (555)
Q Consensus 268 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~-----~~~l~~~~~~---------------~~~~~~il 327 (555)
..... +.....+...+.+.- ..+-+++||+++..... ...|+..+.. .-.++.+|
T Consensus 395 ~~~~~----g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 395 RRTYI----GSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred hhccC----CCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 00000 111223333333322 23347889999541111 2333332221 11344555
Q ss_pred EEeCchhhhh-hcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 328 ITTRDKRVLD-KCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 328 iTsR~~~~~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.|+....+.. ..+....+++.+++.+|-.++....+
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6654322211 12344678999999999988887776
No 200
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.13 E-value=0.00016 Score=62.74 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 201
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.13 E-value=0.00086 Score=60.04 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=33.6
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 193 FVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+||....++++.+.+..-......|.|+|..|+||+.+|+.+.+.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 47888888888877763333345688999999999999999987443
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.0024 Score=63.56 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=29.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+.++|++|+|||+||..+++.+......++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999998876655566655
No 203
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0077 Score=60.75 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=81.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
.|--+++||||.|||+++.++++.+. .-++.-.+.....+.. ++.++.. ..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n~d----Lr~LL~~---------------------t~ 285 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLDSD----LRHLLLA---------------------TP 285 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCcHH----HHHHHHh---------------------CC
Confidence 45678999999999999999997664 3344332222222111 2222211 12
Q ss_pred CceEEEEeCCCCcHH-------------------HHHHHhcCC---CCCCCCceEE-EEeCch-----hhhhhcCCCeEE
Q 043805 294 IKVLIVLDDVHDGFT-------------------QLENLVGGS---DKFSPGSRII-ITTRDK-----RVLDKCGVDNIF 345 (555)
Q Consensus 294 ~~~LlVlDdv~~~~~-------------------~~~~l~~~~---~~~~~~~~il-iTsR~~-----~~~~~~~~~~~~ 345 (555)
.+-+||++|++...+ .+.-|+..+ ...+.+=+|| +||-.. .++.....+-.+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 456888888865111 111222222 2222233555 555432 222222344567
Q ss_pred EeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 346 EVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 346 ~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
.++-=+.+.-..|+...+.... + ..++.+|.+...|.-+.=.+++..|
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 8888888888888888873322 1 2345566666666655555555554
No 204
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.015 Score=63.07 Aligned_cols=180 Identities=16% Similarity=0.200 Sum_probs=102.9
Q ss_pred CCCCcccchhhHHHHHh---hhcc-------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc
Q 043805 189 DLDSFVGLNSRIEEMKS---LMCL-------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM 258 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~---~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 258 (555)
....+.|-++..++|.+ .|.. +..-++=+.|+||||+|||-||++++-... +-|+.. +..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~sv----SGS- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSV----SGS- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceeee----chH-
Confidence 34567887766555555 4432 112367799999999999999999986643 223331 110
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc----------------HHHHHHHhcCCCCCC-
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG----------------FTQLENLVGGSDKFS- 321 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~~l~~~~~~~~- 321 (555)
+++..+.+. +...+.+.....-...|+++.+|+++.. ...+.+|+..+..+.
T Consensus 379 -------EFvE~~~g~----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 -------EFVEMFVGV----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred -------HHHHHhccc----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 111111111 1122222233333457899999988651 123455555544333
Q ss_pred -CCceEEEEeCchhhh-----hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHH
Q 043805 322 -PGSRIIITTRDKRVL-----DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLAL 391 (555)
Q Consensus 322 -~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 391 (555)
.+.-++-+|...+++ .....+..+.++.-+...-.++|.-++...... ....++.. |+..+-|++=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 334445555544332 222345678888888899999998887443332 33445555 999999987554
No 205
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.10 E-value=0.0018 Score=60.52 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=32.1
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
....++.|+|++|+|||+++.+++.........++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34689999999999999999999987766666778876
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.09 E-value=0.0022 Score=58.90 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=59.4
Q ss_pred chhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh--hcCCCceEEEEechhhccccC-----hHH----HH
Q 043805 196 LNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI--SRDFQGKCFVADVREESNKMG-----VIH----VR 264 (555)
Q Consensus 196 R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~~~-----~~~----~~ 264 (555)
+..+-....+.|. ...++.+.|++|.|||.||.+.+.+. ...|...++....-......+ ... .+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344444444443 23589999999999999999988643 345677776653322111100 000 01
Q ss_pred HHHHHHHhCCccCCCCCchhHHH---------HHHhccC---ceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeC
Q 043805 265 DEVISRVLGENLKIGTPTIPQNI---------RKRLQRI---KVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTR 331 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l---------~~~l~~~---~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR 331 (555)
..+...+..-. ....+...+ ..+++++ ..++|+|++.+ +..++..++... +.+|++|++--
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD 154 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGD 154 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE-
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecC
Confidence 11111111100 112222111 1223443 57999999954 355677776554 58999999975
Q ss_pred c
Q 043805 332 D 332 (555)
Q Consensus 332 ~ 332 (555)
.
T Consensus 155 ~ 155 (205)
T PF02562_consen 155 P 155 (205)
T ss_dssp -
T ss_pred c
Confidence 3
No 207
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.07 E-value=0.0019 Score=61.56 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=32.7
Q ss_pred HHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC------CCceEEEE
Q 043805 203 MKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD------FQGKCFVA 249 (555)
Q Consensus 203 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 249 (555)
|...|..+-....++.|+|++|+|||+|+.+++...... ...++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 444444333346799999999999999999998654322 24667766
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.07 E-value=0.00042 Score=60.06 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=32.4
Q ss_pred ccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 194 VGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 194 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
||+...++++.+.+..-......|.|+|.+|+||+++|+.+...-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777778888777653333445688999999999999998776543
No 209
>PHA00729 NTP-binding motif containing protein
Probab=97.06 E-value=0.0015 Score=60.75 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=23.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+...++|+|.+|+|||+||..+++.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998764
No 210
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.05 E-value=0.024 Score=60.13 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=113.6
Q ss_pred CCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEecCcchhHHHHHHHHHhhh-----cCCCceE--EEEechhhcccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL---ESHDVRIVGIWGMGGVGKTTIASVVFHQIS-----RDFQGKC--FVADVREESNKM 258 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-----~~f~~~~--~~~~~~~~~~~~ 258 (555)
.+..+-+|+.|..+|.+.+.. ..+....+-|+|.+|+|||..+.++.+.+. ..-+... .+.. ..-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINg----m~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEING----LRLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcc----eeec
Confidence 567789999999999988762 223456899999999999999999998654 2223323 3332 2223
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc-----cCceEEEEeCCCCc----HHHHHHHhcCCCCCCCCceEEEE
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ-----RIKVLIVLDDVHDG----FTQLENLVGGSDKFSPGSRIIIT 329 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~-----~~~~LlVlDdv~~~----~~~~~~l~~~~~~~~~~~~iliT 329 (555)
....+...+...+.+... ......+.|..+.. .+++++++|+++.. .+.+-.+..... .++++++|.
T Consensus 470 ~~~~~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvvi 545 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVVI 545 (767)
T ss_pred CHHHHHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEEE
Confidence 455666666666554332 22223333434433 35789999999651 222333332211 256666554
Q ss_pred eCch--h---------hhhhcCCCeEEEeecCChHHHHHHHHHHhhccCC-CChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 330 TRDK--R---------VLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNN-RSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 330 sR~~--~---------~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~-~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
+=.. + +.+.+ ....+...|.+.++-.+++..++.+... .....+=+++.++...|..=.|+...-
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 3211 1 11111 3457888999999999999888743311 122233344455555555555554443
No 211
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.04 E-value=0.00053 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+|+|.|++|+||||+|+++++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 212
>PRK04296 thymidine kinase; Provisional
Probab=97.04 E-value=0.00097 Score=61.21 Aligned_cols=110 Identities=17% Similarity=0.079 Sum_probs=59.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCC---CCCchhHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKI---GTPTIPQNIRKRL 291 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~~~l~~~l~~~l 291 (555)
.++.|+|++|.||||++..++.+...+...++++.. ........ ..+...++...... ....+...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~----~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGE----GKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccC----CcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 478899999999999999999987665444444420 00111111 11222221111110 11222323333 2
Q ss_pred ccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 292 QRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
.++.-+||+|.+... .+++..+...+. ..|..+++|.++.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 235569999999541 233554544432 2678899999874
No 213
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.03 E-value=0.0099 Score=61.20 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=34.7
Q ss_pred chhhHHHHHhhhc-----ccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 196 LNSRIEEMKSLMC-----LESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 196 R~~el~~l~~~L~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...-+.++..||. ...-+.+++.|+||+|+||||.++.++..+.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3456777777876 3445678999999999999999998887653
No 214
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.02 E-value=0.0018 Score=65.34 Aligned_cols=107 Identities=16% Similarity=0.261 Sum_probs=61.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
...+.|+|+.|+||||++..+...+.......++.. ..+... ..............+.........++..++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-----Edp~E~--~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-----EDPIEY--VHRNKRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-----cCChhh--hccCccceEEccccCCCCcCHHHHHHHhhcc
Confidence 468999999999999999999887765444444433 111000 0000000000000111234567778888999
Q ss_pred CceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeC
Q 043805 294 IKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTR 331 (555)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR 331 (555)
.+=+|++|++.+ .+.....+.... .|..++.|.-
T Consensus 195 ~pd~i~vgEird-~~~~~~~l~aa~---tGh~v~~T~H 228 (343)
T TIGR01420 195 DPDVILIGEMRD-LETVELALTAAE---TGHLVFGTLH 228 (343)
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH---cCCcEEEEEc
Confidence 999999999977 555554443321 3444444444
No 215
>PRK06696 uridine kinase; Validated
Probab=97.00 E-value=0.0012 Score=62.36 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=37.2
Q ss_pred cchhhHHHHHhhhcc-cCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 195 GLNSRIEEMKSLMCL-ESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 195 GR~~el~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.|++.+++|.+.+.. ..+++.+|+|.|.+|+||||||..++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 366777777776642 34567899999999999999999999887544
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.99 E-value=0.0006 Score=67.70 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=41.4
Q ss_pred CcccchhhHHHHHhhhccc----CCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 192 SFVGLNSRIEEMKSLMCLE----SHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.++|.++.++++.+++... ....++++|+|++|+||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988632 234688999999999999999999987754
No 217
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0042 Score=66.28 Aligned_cols=152 Identities=20% Similarity=0.195 Sum_probs=84.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
..+.+.++|++|.|||.||++++......|-....- .++....+. ....+...+.....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-----------------~l~sk~vGe----sek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-----------------ELLSKWVGE----SEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------------HHhccccch----HHHHHHHHHHHHHc
Confidence 456899999999999999999998655443211110 111111111 11223333344445
Q ss_pred cCceEEEEeCCCC-------c-----HHHHHHHhcCCC--CCCCCceEEEEeCchhhhhh-----cCCCeEEEeecCChH
Q 043805 293 RIKVLIVLDDVHD-------G-----FTQLENLVGGSD--KFSPGSRIIITTRDKRVLDK-----CGVDNIFEVKGLQHS 353 (555)
Q Consensus 293 ~~~~LlVlDdv~~-------~-----~~~~~~l~~~~~--~~~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~ 353 (555)
..+++|++|+++. . ...+..++..+. ....++.+|-+|-.+..+.. ......+.+++.+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7899999999954 0 123444444332 22244455555544332221 134568899999999
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHhcC
Q 043805 354 KALELFCRKAFRQNNRSHDLLELSQEVVCYADG 386 (555)
Q Consensus 354 ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G 386 (555)
+..+.|..+....... -...-..+.+++.+.|
T Consensus 414 ~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 414 ERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 9999999988422221 0112234455555555
No 218
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.98 E-value=0.00073 Score=63.49 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=30.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
-.++|.|.+|+|||+|+..+.......|..++++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 35779999999999999999999998997666654
No 219
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.98 E-value=0.0022 Score=61.08 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=34.8
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|.+.|..+-....++.|+|++|+|||+|+.+++.....+...++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344455433345679999999999999999999876544555667765
No 220
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.98 E-value=0.0066 Score=66.53 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=71.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRI 294 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~ 294 (555)
+-+.|+|++|+|||++++.++......| +.+. ... + .. ...+ .....+...+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~------~---~~----~~~g----~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD------F---VE----MFVG----VGASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH------h---HH----hhhc----ccHHHHHHHHHHHHhcC
Confidence 3489999999999999999988765332 1111 000 0 00 0000 01112222333344457
Q ss_pred ceEEEEeCCCCcH----------------HHHHHHhcCCCCC--CCCceEEEEeCchhhhhh-----cCCCeEEEeecCC
Q 043805 295 KVLIVLDDVHDGF----------------TQLENLVGGSDKF--SPGSRIIITTRDKRVLDK-----CGVDNIFEVKGLQ 351 (555)
Q Consensus 295 ~~LlVlDdv~~~~----------------~~~~~l~~~~~~~--~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~ 351 (555)
|++|+||+++. . ..+..++..+... ..+..+|.||..+..+.. ......+.++..+
T Consensus 245 P~IifIDEiD~-l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 245 PCIIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CcEEEehhHhh-hhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 89999999965 2 1233343333221 234555556665432221 1235678899899
Q ss_pred hHHHHHHHHHHhh
Q 043805 352 HSKALELFCRKAF 364 (555)
Q Consensus 352 ~~ea~~Ll~~~~~ 364 (555)
.++-.+++..+..
T Consensus 324 ~~~R~~Il~~~~~ 336 (644)
T PRK10733 324 VRGREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887763
No 221
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.95 E-value=0.0022 Score=67.98 Aligned_cols=28 Identities=36% Similarity=0.473 Sum_probs=24.6
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+..+++.++|++|.||||||.-++++.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc
Confidence 4557899999999999999999998765
No 222
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.93 E-value=0.0035 Score=60.16 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=32.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEec
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADV 251 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 251 (555)
..+.++|.|.+|.|||+|+.++++.+..+|...+++..+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~i 106 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGV 106 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEe
Confidence 346789999999999999999999988777777776644
No 223
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.93 E-value=0.0017 Score=58.18 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=41.9
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc--C
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR--I 294 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~--~ 294 (555)
+.|.|.+|+|||++|.+++.. .....+++.. ....+. .....+..............+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at----~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT----AEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc----cCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 679999999999999999876 2235556542 222221 22222222222222222222333334444432 3
Q ss_pred ceEEEEeCC
Q 043805 295 KVLIVLDDV 303 (555)
Q Consensus 295 ~~LlVlDdv 303 (555)
+-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 448999997
No 224
>PRK04328 hypothetical protein; Provisional
Probab=96.92 E-value=0.0058 Score=58.68 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|.+.|..+=....++.|.|++|+|||+|+.+++.........++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344445433234678999999999999999999887545556677765
No 225
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.92 E-value=0.0021 Score=63.40 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=35.5
Q ss_pred HHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|..+|. .+=+..+++.|+|++|+|||+||.+++.........++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3444443 23344678999999999999999999987766666677775
No 226
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.91 E-value=0.0055 Score=60.53 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=36.7
Q ss_pred cchhhHHHHHhhhccc--CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 195 GLNSRIEEMKSLMCLE--SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 195 GR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+|...+....+++..- ....+-+.|+|+.|+|||.||..+++.+......+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4444444444444321 113457889999999999999999998876544555554
No 227
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.91 E-value=0.0024 Score=62.96 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=35.4
Q ss_pred HHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|..+|. .+=...+++.|+|++|+||||||.+++.........++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3444443 33345679999999999999999999887766656667765
No 228
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.001 Score=57.38 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=28.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC-CC-ceEEEEech
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD-FQ-GKCFVADVR 252 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-~~~~~~~~~ 252 (555)
--+.|+|+||+|||||+..++..++.. |. .++|...++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 468899999999999999999988766 54 344443333
No 229
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.91 E-value=0.0045 Score=59.91 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=60.2
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccC
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLK 277 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 277 (555)
..++.|..++. .....++|+|+.|+||||++..+...+.......+.+.+..+.. +.. + .+.. ...
T Consensus 67 ~~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~~----~-~q~~--v~~ 132 (264)
T cd01129 67 ENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IPG----I-NQVQ--VNE 132 (264)
T ss_pred HHHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CCC----c-eEEE--eCC
Confidence 34445555553 23458999999999999999998877654222333333111110 000 0 0000 001
Q ss_pred CCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcC
Q 043805 278 IGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGG 316 (555)
Q Consensus 278 ~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~ 316 (555)
.........++..++..+-.|+++++.+ .+....++..
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~a 170 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRD-AETAEIAVQA 170 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHHHHHH
Confidence 1123466778888899999999999987 5555544433
No 230
>PRK09354 recA recombinase A; Provisional
Probab=96.90 E-value=0.0023 Score=63.72 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=36.4
Q ss_pred HHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|..+|. .+=...+++.|+|++|+|||+|+.+++.........++|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4444554 33345679999999999999999999987766666777776
No 231
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0096 Score=63.04 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=85.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
..-|.++|++|+|||-||.+++....- -|+. + ..+ +++....+. +.+.+...+.++-.-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~-----~fis-v---KGP--------ElL~KyIGa----SEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNL-----RFIS-V---KGP--------ELLSKYIGA----SEQNVRDLFERAQSA 759 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCe-----eEEE-e---cCH--------HHHHHHhcc----cHHHHHHHHHHhhcc
Confidence 345889999999999999999876432 2333 1 111 233333322 233344455566667
Q ss_pred CceEEEEeCCCC------------cHHHHHHHhcCCCCC--CCCceEEE-EeCchhh----hhhcCCCeEEEeecCChHH
Q 043805 294 IKVLIVLDDVHD------------GFTQLENLVGGSDKF--SPGSRIII-TTRDKRV----LDKCGVDNIFEVKGLQHSK 354 (555)
Q Consensus 294 ~~~LlVlDdv~~------------~~~~~~~l~~~~~~~--~~~~~ili-TsR~~~~----~~~~~~~~~~~l~~L~~~e 354 (555)
+|++|+||.++. +...+.+++..+... -.|+.|+. |||.+.+ +.....++.+.-+..+..|
T Consensus 760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 999999999965 223456666554321 25666664 5554322 2222233444445556667
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchH
Q 043805 355 ALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLA 390 (555)
Q Consensus 355 a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 390 (555)
-.+.|......-..+. .-..+.++.+++|..-|
T Consensus 840 Rl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 6777766552111111 22356788888887654
No 232
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.90 E-value=0.0058 Score=63.77 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=35.7
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+..|.+.|..+-....++.|.|++|+|||||+.+++.........++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34455555433233569999999999999999999987765444566665
No 233
>PRK07667 uridine kinase; Provisional
Probab=96.89 E-value=0.002 Score=59.34 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=31.7
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+.+.+.+....+...+|+|.|.+|+||||+|..+...+...
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 44555555444556899999999999999999999887654
No 234
>PRK08118 topology modulation protein; Reviewed
Probab=96.86 E-value=0.0031 Score=56.52 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|.|.|++|+||||||+.++....
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 235
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.83 E-value=0.0018 Score=56.73 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=30.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.+|.|+|.+|+||||||.++.+++......+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999988776666665
No 236
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.011 Score=54.68 Aligned_cols=131 Identities=22% Similarity=0.328 Sum_probs=70.6
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
+.++-|.++||+|.|||.||+.+++.-...| +..++. ++....++. ++..+.+.++-.-
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~f-----irvvgs------------efvqkylge----gprmvrdvfrlak 245 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGS------------EFVQKYLGE----GPRMVRDVFRLAK 245 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccH------------HHHHHHhcc----CcHHHHHHHHHHh
Confidence 4578899999999999999999998655433 332211 122222222 2333444444444
Q ss_pred ccCceEEEEeCCCC------------cHH---HHHHHhcCCCCC--CCCceEEEEeCch-----hhhhhcCCCeEEEeec
Q 043805 292 QRIKVLIVLDDVHD------------GFT---QLENLVGGSDKF--SPGSRIIITTRDK-----RVLDKCGVDNIFEVKG 349 (555)
Q Consensus 292 ~~~~~LlVlDdv~~------------~~~---~~~~l~~~~~~~--~~~~~iliTsR~~-----~~~~~~~~~~~~~l~~ 349 (555)
.+.|.++++|.++. +.+ .+-.++.....+ ..+.++|..|... .++........++.+-
T Consensus 246 enapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefpl 325 (408)
T KOG0727|consen 246 ENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 325 (408)
T ss_pred ccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCC
Confidence 56789999999865 011 122233333222 2466777766432 2222222345666664
Q ss_pred CChHHHHHHHHHHh
Q 043805 350 LQHSKALELFCRKA 363 (555)
Q Consensus 350 L~~~ea~~Ll~~~~ 363 (555)
-+..+-.-.|....
T Consensus 326 pdrrqkrlvf~tit 339 (408)
T KOG0727|consen 326 PDRRQKRLVFSTIT 339 (408)
T ss_pred CchhhhhhhHHhhh
Confidence 45555444454443
No 237
>PRK14974 cell division protein FtsY; Provisional
Probab=96.79 E-value=0.028 Score=56.12 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
++.+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999877655
No 238
>PRK07261 topology modulation protein; Provisional
Probab=96.78 E-value=0.0058 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|.|+|++|+||||||++++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 239
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.77 E-value=0.0079 Score=62.85 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=36.4
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+..|.+.|..+-....++.|.|.+|+|||||+.+++.........++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44555555433344679999999999999999999887765544566665
No 240
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.76 E-value=0.012 Score=66.69 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=73.7
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCC----CceEEEEechhhccccChHH-HHHHHHHHHhCCccCCCCCchhHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDF----QGKCFVADVREESNKMGVIH-VRDEVISRVLGENLKIGTPTIPQNIRK 289 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~~l~~~l~~ 289 (555)
.-+.|.|.+|+||||+...++-...... +..+++.............. .+...+........ ..........+
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~e 300 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG--IAKQLIEAHQE 300 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC--CcchhhHHHHH
Confidence 3688999999999999999987553332 22233321100000000000 12222222221111 22233333357
Q ss_pred HhccCceEEEEeCCCCcH--------HHHHHHhcCCCCCCCCceEEEEeCchhhhhhcCCCeEEEeecCChHHHHHHH
Q 043805 290 RLQRIKVLIVLDDVHDGF--------TQLENLVGGSDKFSPGSRIIITTRDKRVLDKCGVDNIFEVKGLQHSKALELF 359 (555)
Q Consensus 290 ~l~~~~~LlVlDdv~~~~--------~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~ea~~Ll 359 (555)
.+...++++.+|.++... ..+..+.+.. +...+|+|+|....-.........++..+.++.-.+.+
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~----~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY----PDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc----cCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 888999999999996511 1123333333 57799999987644333333455666666666544333
No 241
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.75 E-value=0.0065 Score=56.02 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=57.8
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCC
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIG 279 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 279 (555)
.+.+...+. .+.++++|.|++|+|||+++..+...+......++++. ... .....+.......
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-----pT~----~Aa~~L~~~~~~~----- 69 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-----PTN----KAAKELREKTGIE----- 69 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-----SSH----HHHHHHHHHHTS------
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-----CcH----HHHHHHHHhhCcc-----
Confidence 344444443 23468889999999999999998887766533334432 111 1111222221111
Q ss_pred CCchhHHHHHHh---------ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 280 TPTIPQNIRKRL---------QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 280 ~~~l~~~l~~~l---------~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
...+...+.... ..+.-+||+|++.. +...+..++..... .++++|+.--..
T Consensus 70 a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 70 AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 111111100000 12345999999954 24566666665543 467887776543
No 242
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0031 Score=56.65 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
+.|.++|.||+||||+|+++++.+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4688999999999999999999877653
No 243
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.71 E-value=0.007 Score=55.13 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+|.|.|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998765
No 244
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.66 E-value=0.0054 Score=56.04 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=27.6
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.|.|++|+|||+|+.+++.........++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999987665556677765
No 245
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.65 E-value=0.029 Score=52.89 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=103.8
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc------CCCceEEEEechh------hcc-
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR------DFQGKCFVADVRE------ESN- 256 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~------~~~- 256 (555)
.+.+.++++.-..|..+.. .++.+-..++||+|.||-|.+..+.+++-. +-+...|...... .+.
T Consensus 12 l~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred hhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 3457778777777777654 234677889999999999999888876421 1112222221100 000
Q ss_pred --------c--cChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCce-EEEEeCCCC-cHHHHHHHhcCCCCCCCCc
Q 043805 257 --------K--MGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKV-LIVLDDVHD-GFTQLENLVGGSDKFSPGS 324 (555)
Q Consensus 257 --------~--~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~-LlVlDdv~~-~~~~~~~l~~~~~~~~~~~ 324 (555)
+ ..-..+.++++..+..... + +....+++ ++|+-.++. +.+....|.+........+
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~q------i-----e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQ------I-----ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcc------h-----hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 0 0011122233322221100 0 11112344 667776654 2334444544444445778
Q ss_pred eEEEEeCch--hhhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch
Q 043805 325 RIIITTRDK--RVLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL 389 (555)
Q Consensus 325 ~iliTsR~~--~~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 389 (555)
++|+..-+- -+.+.....-.+.++..+.+|....++..+-......+ .+++.+|+++++|+-.
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLR 223 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHH
Confidence 887754321 11122223456899999999999999998844443333 6889999999999853
No 246
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.64 E-value=0.039 Score=60.92 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=37.9
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.++|....++++.+...........|.|+|.+|+||+++|+.+.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4678999998888877665322333458899999999999999987654
No 247
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.64 E-value=0.0093 Score=54.87 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=36.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLG 273 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 273 (555)
++++.++|+.|+||||.+..++.+...+-..+..+. . .....+..+.++.....+.-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~--D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-A--DTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-E--STSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec-C--CCCCccHHHHHHHHHHHhcc
Confidence 468999999999999999999988766644444544 1 11222334445555555543
No 248
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.63 E-value=0.0062 Score=51.11 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=61.3
Q ss_pred cEEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCcc-------------
Q 043805 19 EVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAA------------- 85 (555)
Q Consensus 19 dvFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~------------- 85 (555)
.|||-|+ +|. .+++.+...|+..|+.+.+=......|..+.+.+.+.+.+|+..|++++|+=..
T Consensus 1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a 77 (125)
T PF10137_consen 1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA 77 (125)
T ss_pred CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence 4899997 665 799999999998888777555566899999999999999999999999984221
Q ss_pred chhhHHHHHHHHH
Q 043805 86 SKWCLNELVKILD 98 (555)
Q Consensus 86 s~~~~~El~~~~~ 98 (555)
..-.+.|+..++.
T Consensus 78 R~NVifE~G~f~g 90 (125)
T PF10137_consen 78 RQNVIFELGLFIG 90 (125)
T ss_pred ccceeehhhHHHh
Confidence 1234568877775
No 249
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.63 E-value=0.052 Score=58.11 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=37.4
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...+.++|....++++.+.+..-......|.|+|.+|+||+.+|+.+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 44568999999888887766422223345889999999999999986543
No 250
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.61 E-value=0.005 Score=59.57 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=23.8
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.|.|+|.||+||||+|.++...+...-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 47899999999999999999998776433344443
No 251
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0039 Score=63.72 Aligned_cols=151 Identities=21% Similarity=0.209 Sum_probs=77.5
Q ss_pred Ccccch---hhHHHHHhhhcccC-----C--CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChH
Q 043805 192 SFVGLN---SRIEEMKSLMCLES-----H--DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVI 261 (555)
Q Consensus 192 ~fvGR~---~el~~l~~~L~~~~-----~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 261 (555)
..-|-+ .|++++.+.|.... + =++-|.++||||.|||-||++++-...-. +|.. . .++
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~-s--GSE----- 372 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYA-S--GSE----- 372 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEec-c--ccc-----
Confidence 344555 45666666665321 1 16779999999999999999998654322 2222 1 111
Q ss_pred HHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhcCCCCCC--CCceEE
Q 043805 262 HVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVGGSDKFS--PGSRII 327 (555)
Q Consensus 262 ~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~~~~~~--~~~~il 327 (555)
+.+++-. .+...+.+.+...-..-|++|++|.++.. -..+.+++..+.-+. .|.-||
T Consensus 373 --FdEm~VG-------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 373 --FDEMFVG-------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred --hhhhhhc-------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEE
Confidence 1111111 11222333333444567999999999651 123556665554443 343333
Q ss_pred EEeCchhhhh----hc-CCCeEEEeecCChHHHHHHHHHHh
Q 043805 328 ITTRDKRVLD----KC-GVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 328 iTsR~~~~~~----~~-~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
-.|-.++.+. .. ..+..+.++..+..--.++|..+.
T Consensus 444 gATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 444 GATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred eccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 3333222211 11 233455666555554455555554
No 252
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.046 Score=50.96 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=32.0
Q ss_pred CcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 192 SFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..=|-+..+++|.+.+-. +-..++-+.++||+|.|||-+|+..+.+-.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 344555566655554321 112366789999999999999999886543
No 253
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0073 Score=57.76 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=26.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
.+..++|||++|.|||-||+.++..+...|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999998876553
No 254
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.55 E-value=0.065 Score=56.81 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..++|+...+..+.+.+.........|.|+|.+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468999998888877765333345568899999999999998877654
No 255
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.54 E-value=0.0042 Score=59.76 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=26.3
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|.++|..+-....+.=|+|++|+|||+|+.+++-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 4455553222234588899999999999999987643
No 256
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.53 E-value=0.0046 Score=65.49 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=38.3
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+..|.+.|..+=....++.|.|++|+|||+|+.+++.....+...++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566666544445679999999999999999999998766666666665
No 257
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.029 Score=60.16 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=66.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR 293 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~ 293 (555)
..-|.++|+||.|||-||++++-...-. |+. + ..+ +++..-.++ +.+.+.+...++-..
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS-V---KGP--------ELLNMYVGq----SE~NVR~VFerAR~A 763 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLN-----FLS-V---KGP--------ELLNMYVGQ----SEENVREVFERARSA 763 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceee-----EEe-e---cCH--------HHHHHHhcc----hHHHHHHHHHHhhcc
Confidence 3458899999999999999999765433 222 1 111 222222222 223344444455556
Q ss_pred CceEEEEeCCCCc--------------HHHHHHHhcCCC---C-CCCCceEEEEeCchhh-----hhhcCCCeEEEeecC
Q 043805 294 IKVLIVLDDVHDG--------------FTQLENLVGGSD---K-FSPGSRIIITTRDKRV-----LDKCGVDNIFEVKGL 350 (555)
Q Consensus 294 ~~~LlVlDdv~~~--------------~~~~~~l~~~~~---~-~~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L 350 (555)
.|++|.||+++.. ...+.+++..+. . ...+.-||-.|-.++. +.....+..+.|++-
T Consensus 764 ~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~ 843 (953)
T KOG0736|consen 764 APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPN 843 (953)
T ss_pred CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCC
Confidence 8999999999761 112333333222 1 2244445544443333 222234566778877
Q ss_pred ChHHHHH
Q 043805 351 QHSKALE 357 (555)
Q Consensus 351 ~~~ea~~ 357 (555)
..++...
T Consensus 844 ~d~esk~ 850 (953)
T KOG0736|consen 844 EDAESKL 850 (953)
T ss_pred ccHHHHH
Confidence 6666544
No 258
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.51 E-value=0.033 Score=57.65 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.7
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+.++.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999887655
No 259
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.65 Score=45.71 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=92.7
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC---------CC-ceEEEEechhhccccChHHHHHHHHH
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD---------FQ-GKCFVADVREESNKMGVIHVRDEVIS 269 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~~~~ll~ 269 (555)
.+.+.+.+..+ .-..+..++|+.|+||+++|..+++.+-.. .+ ...++. . ....... +..+++..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~--~g~~i~v-d~Ir~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I--FDKDLSK-SEFLSAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c--CCCcCCH-HHHHHHHH
Confidence 34455555422 236788899999999999999999876211 11 112221 0 0011111 11222222
Q ss_pred HHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhh-cCCCeEEE
Q 043805 270 RVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDK-CGVDNIFE 346 (555)
Q Consensus 270 ~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~-~~~~~~~~ 346 (555)
.+.-.+ .-.+.+-++|+|+++. .......|+..+...++.+.+|++|.+. .+++. ......++
T Consensus 80 ~~~~~~--------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 80 KLYFSS--------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred HhccCC--------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 211100 0014567899999865 2344566776666656777777666443 33432 34567899
Q ss_pred eecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 347 VKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 347 l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
+.+++.++..+.+.... .+ ++.+..++..++|.=.|+..
T Consensus 146 f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 99999999998886641 11 23355566666652234444
No 260
>PRK10867 signal recognition particle protein; Provisional
Probab=96.49 E-value=0.03 Score=57.79 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+.++.++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998877655
No 261
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.49 E-value=0.0063 Score=57.28 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=29.3
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
++.+.+....++..+|+|+|+||.|||||..++...++..-
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g 57 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERG 57 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcC
Confidence 33333333344578999999999999999999998877653
No 262
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.46 E-value=0.016 Score=51.63 Aligned_cols=34 Identities=21% Similarity=0.051 Sum_probs=26.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
..|-|++..|.||||.|...+.+...+.-.++.+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 5778888899999999999998876654444333
No 263
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.027 Score=56.68 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=28.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
++++++|.|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3578999999999999999999987765433444443
No 264
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.46 E-value=0.0074 Score=56.64 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|+|.|++|+||||+++.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 265
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.44 E-value=0.0068 Score=61.20 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=59.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC---ceEEEEechhhccccChHHHHH--HHHHHHhCCccCCCCCchhHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ---GKCFVADVREESNKMGVIHVRD--EVISRVLGENLKIGTPTIPQNIR 288 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~~~~l~~~l~ 288 (555)
...|+|+|+.|+||||++..++..+....+ .++.+.+.-+ ........ ..+.+ .............++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~~~~~v~Q---~~v~~~~~~~~~~l~ 206 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIETISASVCQ---SEIPRHLNNFAAGVR 206 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eeccccccccceeee---eeccccccCHHHHHH
Confidence 468999999999999999999887754332 1222221111 00000000 00000 000112235667778
Q ss_pred HHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEe
Q 043805 289 KRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 289 ~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
..++..|-.+++..+.+ .+.....+.... .| +.++||
T Consensus 207 ~aLR~~Pd~i~vGEiRd-~et~~~al~aa~---tG-h~v~tT 243 (358)
T TIGR02524 207 NALRRKPHAILVGEARD-AETISAALEAAL---TG-HPVYTT 243 (358)
T ss_pred HHhccCCCEEeeeeeCC-HHHHHHHHHHHH---cC-CcEEEe
Confidence 88999999999999987 666654444321 33 445555
No 266
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.44 E-value=0.0024 Score=54.22 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=20.4
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|+|.|.+|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 267
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.43 E-value=0.0053 Score=59.09 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.6
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+|.++|++|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887543
No 268
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.42 E-value=0.0054 Score=62.03 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=55.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCC--ceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQ--GKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
..+.|+|+.|+||||++..++..+....+ ..+-+.+..+.... ... .+.. ......+.+.......++..|+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~~----~~~~-~~q~evg~~~~~~~~~l~~aLR 223 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SPD----DLLP-PAQSQIGRDVDSFANGIRLALR 223 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CCc----eeec-ccccccCCCccCHHHHHHHhhc
Confidence 47889999999999999999887754332 22322211111000 000 0000 0000001123456678888999
Q ss_pred cCceEEEEeCCCCcHHHHHHHhcC
Q 043805 293 RIKVLIVLDDVHDGFTQLENLVGG 316 (555)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~l~~~ 316 (555)
..|=.|+++++.+ .+.....+..
T Consensus 224 ~~PD~I~vGEiRd-~et~~~al~a 246 (372)
T TIGR02525 224 RAPKIIGVGEIRD-LETFQAAVLA 246 (372)
T ss_pred cCCCEEeeCCCCC-HHHHHHHHHH
Confidence 9999999999987 6666654443
No 269
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.42 E-value=0.0039 Score=56.47 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=31.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.+.+|+++|++|+||||+++.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3568999999999999999999998877766666653
No 270
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.41 E-value=0.039 Score=65.30 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.++-|.++|++|+|||.||+++|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999999864
No 271
>PRK14527 adenylate kinase; Provisional
Probab=96.40 E-value=0.0059 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=23.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.+++|.|++|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 272
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.37 E-value=0.0034 Score=60.73 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCF 247 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 247 (555)
.+..++.|.|.+|+|||||+..+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 457899999999999999999999987766543333
No 273
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.36 E-value=0.012 Score=58.77 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=32.1
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc------CCCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR------DFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 249 (555)
.|.++|..+=....++-|+|++|+|||+|+.+++-...- .-..++|+.
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 344455433334678889999999999999999754321 123567776
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.36 E-value=0.013 Score=56.98 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=28.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.++++++|++|+||||++..++..+......+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999999999999999999987765543444443
No 275
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.34 E-value=0.0027 Score=53.06 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcCCCce
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRDFQGK 245 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 245 (555)
|.|+|.+|+|||++|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999888776543
No 276
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.32 E-value=0.0041 Score=65.22 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCcccchhhHHHHHhhhc----ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 191 DSFVGLNSRIEEMKSLMC----LESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..++|.++.++++.+.|. ......++++++||+|+|||+||..++..+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 458999999999998872 223456899999999999999999999866544
No 277
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.025 Score=52.87 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=27.7
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEec
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADV 251 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 251 (555)
+.++-|.++|++|.|||-+|++++++- ..+|+..+
T Consensus 209 dppkgvllygppgtgktl~aravanrt-----dacfirvi 243 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI 243 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh
Confidence 456778999999999999999999764 45666533
No 278
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.29 E-value=0.0063 Score=53.55 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=46.3
Q ss_pred EEecCcchhHHHHHHHHHhhhcCCCceEEEEe---chhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhcc--
Q 043805 219 IWGMGGVGKTTIASVVFHQISRDFQGKCFVAD---VREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQR-- 293 (555)
Q Consensus 219 I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~-- 293 (555)
|.|+||+||||+|..++.+.. ...+.. ++......+ .....+.........++.+.+...+...+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-----~~~is~~~llr~~~~~~s---~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-----LVHISVGDLLREEIKSDS---ELGKQIQEYLDNGELVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-----SEEEEHHHHHHHHHHTTS---HHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhcC-----cceechHHHHHHHHhhhh---HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 689999999999999998752 223321 111111111 1112222222222223334455555555543
Q ss_pred CceEEEEeCCCCcHHHHHHHhc
Q 043805 294 IKVLIVLDDVHDGFTQLENLVG 315 (555)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~l~~ 315 (555)
...-+|||++-....+...+..
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHHH
T ss_pred ccceeeeeeccccHHHHHHHHH
Confidence 3567899999654777666654
No 279
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.068 Score=49.58 Aligned_cols=130 Identities=19% Similarity=0.334 Sum_probs=70.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
.++-+.++|++|.|||-||+.+++.-. ||+..+.. . ++.+...+.. ...+.+.+.-.-.
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~------c~firvsg---s--------elvqk~igeg----srmvrelfvmare 238 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSG---S--------ELVQKYIGEG----SRMVRELFVMARE 238 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcc------eEEEEech---H--------HHHHHHhhhh----HHHHHHHHHHHHh
Confidence 456789999999999999999987532 33332211 1 1222222211 1112222223334
Q ss_pred cCceEEEEeCCCC------------cHH---HHHHHhcCCCCC--CCCceEEEEeCchhh-----hhhcCCCeEEEeecC
Q 043805 293 RIKVLIVLDDVHD------------GFT---QLENLVGGSDKF--SPGSRIIITTRDKRV-----LDKCGVDNIFEVKGL 350 (555)
Q Consensus 293 ~~~~LlVlDdv~~------------~~~---~~~~l~~~~~~~--~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L 350 (555)
+-|-+|+.|.++. +.+ ..-.++..+..+ ..+.++|..|..-++ +.....+..++.++.
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 5688999999865 111 122233333222 256677776654332 222234567888888
Q ss_pred ChHHHHHHHHHHh
Q 043805 351 QHSKALELFCRKA 363 (555)
Q Consensus 351 ~~~ea~~Ll~~~~ 363 (555)
+.+.-.+++.-+.
T Consensus 319 ~e~ar~~ilkihs 331 (404)
T KOG0728|consen 319 NEEARLDILKIHS 331 (404)
T ss_pred CHHHHHHHHHHhh
Confidence 8877777775544
No 280
>PRK14528 adenylate kinase; Provisional
Probab=96.29 E-value=0.011 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+.+.|.|++|+||||+++.++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 281
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.29 E-value=0.0037 Score=57.64 Aligned_cols=26 Identities=38% Similarity=0.607 Sum_probs=23.5
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+|+|.|++|+||||+|..+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999988754
No 282
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.28 E-value=0.0023 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=21.7
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcC
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
|.|+|++|+|||+||..++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5699999999999999999877644
No 283
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.049 Score=51.90 Aligned_cols=173 Identities=19% Similarity=0.236 Sum_probs=87.9
Q ss_pred CCcccchhhHHHHHhhhc----------ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccCh
Q 043805 191 DSFVGLNSRIEEMKSLMC----------LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGV 260 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 260 (555)
+..-|-+...+.|.+..- .....-+-|+++||+|.|||-||++++-..... |+. .+..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFS----vSSS--- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFS----VSSS--- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEE----eehH---
Confidence 345666666666665432 112235679999999999999999998765422 222 1111
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHh-ccCceEEEEeCCCC--------cHHHH-----HHHhc--CCCCCCCCc
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRL-QRIKVLIVLDDVHD--------GFTQL-----ENLVG--GSDKFSPGS 324 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l-~~~~~LlVlDdv~~--------~~~~~-----~~l~~--~~~~~~~~~ 324 (555)
.+.....+. .+.+...|.+.. +++|-+|++|.++. ..+.. +.|.+ .......|.
T Consensus 201 -----DLvSKWmGE-----SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 201 -----DLVSKWMGE-----SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred -----HHHHHHhcc-----HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 122222221 122333333333 46899999999954 11111 11221 122223455
Q ss_pred eEEEEeCchhhhhhc---CCCeEEEeecCChHHHH-HHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 325 RIIITTRDKRVLDKC---GVDNIFEVKGLQHSKAL-ELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 325 ~iliTsR~~~~~~~~---~~~~~~~l~~L~~~ea~-~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
.||-.|--+-++... .....+-+ ||....|. .+|.-+++. .+....++..+++...++|.-
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~--tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGD--TPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCC--CccccchhhHHHHHhhcCCCC
Confidence 566556544333221 12233444 44445444 455444422 222233445677888887764
No 284
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.25 E-value=0.037 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+..|.|++|+|||+|+.+++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987653
No 285
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.25 E-value=0.0038 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+|.+.|++|+||||+|++++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986654
No 286
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.23 E-value=0.0056 Score=52.06 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=29.8
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
++..++.+.|...-....+++|.|+.|+|||||++.+++.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 344445444432223346899999999999999999998764
No 287
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.23 E-value=0.014 Score=54.55 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|+|.|++|+||||+|..++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998754
No 288
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.005 Score=55.62 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|.|.|++|+||||+|+.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999874
No 289
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.21 E-value=0.0038 Score=46.69 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+++|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
No 290
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.19 E-value=0.017 Score=57.68 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC------CCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD------FQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 249 (555)
.+.+.|..+-....++.|+|++|+|||+|+.+++...... -..++|+.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 4444443222346788999999999999999998764322 13566765
No 291
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.19 E-value=0.0086 Score=57.11 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|.++|..+=....++.|.|++|+|||+|+.+++.........++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444555433345679999999999999999999876545556777765
No 292
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.19 E-value=0.017 Score=57.16 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh------cCCCceEEEE
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS------RDFQGKCFVA 249 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~------~~f~~~~~~~ 249 (555)
..|.++|..+=....++-|+|++|+|||+|+.+++-... ..-..++|+.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 345555543334467888999999999999999875332 1123567765
No 293
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.17 E-value=0.015 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred eEEEEEEecCcchhHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVF 235 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~ 235 (555)
..+++|.|+.|+|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 294
>PRK14531 adenylate kinase; Provisional
Probab=96.15 E-value=0.013 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+.|.|.|++|+||||+++.++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 295
>PRK06762 hypothetical protein; Provisional
Probab=96.15 E-value=0.0045 Score=55.45 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+.+++|+|++|+||||+|+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 296
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.024 Score=51.03 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=25.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
...++|.|+.|.|||||.+.++-.... ..+.+++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~ 61 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILI 61 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEE
Confidence 468999999999999999999875442 2344444
No 297
>PRK08233 hypothetical protein; Provisional
Probab=96.14 E-value=0.0044 Score=56.36 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 298
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.13 E-value=0.017 Score=54.81 Aligned_cols=124 Identities=18% Similarity=0.189 Sum_probs=68.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc--ccChHHHHHHHHHHHhCCcc-------CCCCCch
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN--KMGVIHVRDEVISRVLGENL-------KIGTPTI 283 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~-------~~~~~~l 283 (555)
...+++|+|.+|+|||||++.+..-.... .+.+++..-. ... .........+++...+.... +.+-.+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~-i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKD-ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcc-hhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 34689999999999999999998766544 3344443110 100 12223344555555543222 1122333
Q ss_pred hH-HHHHHhccCceEEEEeCCCC-----cHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhc
Q 043805 284 PQ-NIRKRLQRIKVLIVLDDVHD-----GFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKC 339 (555)
Q Consensus 284 ~~-~l~~~l~~~~~LlVlDdv~~-----~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~ 339 (555)
++ .+.+.+.-+|-++|.|..-. ...++-.++..+.. ..+...++.|-+-.+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 32 35577888999999999833 11223333333221 1355677777766554443
No 299
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.13 E-value=0.0084 Score=58.09 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=33.7
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+..++++|+|.+|+|||+++.+++.........++|+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45689999999999999999999998888877888876
No 300
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.12 E-value=0.022 Score=54.53 Aligned_cols=105 Identities=13% Similarity=0.244 Sum_probs=64.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccC-hHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMG-VIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
..+.|.|+|+.|+||||-.......+-.+.+..+.-. .++-. +..-.+.++.+- ..+.+......+|+..|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI-----EDPIE~vh~skkslI~QR---EvG~dT~sF~~aLraAL 195 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI-----EDPIEYVHESKKSLINQR---EVGRDTLSFANALRAAL 195 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe-----cCchHhhhcchHhhhhHH---HhcccHHHHHHHHHHHh
Confidence 3469999999999999888888877766655554432 11100 000011111110 01224456778889999
Q ss_pred ccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEe
Q 043805 292 QRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
+.-|=+|++-.+.+ .+.+..-+... .-+++++.|
T Consensus 196 ReDPDVIlvGEmRD-~ETi~~ALtAA----ETGHLV~~T 229 (353)
T COG2805 196 REDPDVILVGEMRD-LETIRLALTAA----ETGHLVFGT 229 (353)
T ss_pred hcCCCEEEEecccc-HHHHHHHHHHH----hcCCEEEEe
Confidence 99999999999988 77776655443 233555544
No 301
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0082 Score=52.73 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=29.9
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
..+.++.++|.+|+||||+|..+...+....-....+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3467999999999999999999999887765444443
No 302
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.15 Score=49.64 Aligned_cols=127 Identities=9% Similarity=0.027 Sum_probs=70.4
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-------------CCceEEEEechhhccccChHHHHHHH
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-------------FQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
++|.+.+..+ .-+....++|+.|+||+++|..++..+-.. .+...++... ....
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~--~~~~---------- 73 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ--GKGR---------- 73 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC--CCCC----------
Confidence 3455555422 235688899999999999999999865321 2222222100 0000
Q ss_pred HHHHhCCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhh-c
Q 043805 268 ISRVLGENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDK-C 339 (555)
Q Consensus 268 l~~~~~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~-~ 339 (555)
.+..+++. .+.+.+ .+..-++|+|+++. ..+....|+..+....+++.+|++|.+. .+++. .
T Consensus 74 ---------~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~ 143 (290)
T PRK05917 74 ---------LHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR 143 (290)
T ss_pred ---------cCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH
Confidence 01111111 122222 23455889999964 2456777777776656777777666654 34333 3
Q ss_pred CCCeEEEeecC
Q 043805 340 GVDNIFEVKGL 350 (555)
Q Consensus 340 ~~~~~~~l~~L 350 (555)
.....+.+.++
T Consensus 144 SRcq~~~~~~~ 154 (290)
T PRK05917 144 SRSLSIHIPME 154 (290)
T ss_pred hcceEEEccch
Confidence 34566777765
No 303
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.09 E-value=0.0086 Score=57.86 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=30.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...++.|+|++|+|||+|+.+++......-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3678999999999999999999886655556677766
No 304
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.08 E-value=0.066 Score=51.82 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=60.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCc-cCC--------CCCchh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGEN-LKI--------GTPTIP 284 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~--------~~~~l~ 284 (555)
...++|.|++|+|||||.+.++..+... .+.+++... .... .....++........ ... .... .
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~----~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~ 183 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGI----VDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-A 183 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeec----chhHHHHHHHhcccccccccccccccccchH-H
Confidence 4678999999999999999999776543 333443210 0100 000111111111000 010 0011 1
Q ss_pred HHHHHHhc-cCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043805 285 QNIRKRLQ-RIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRV 335 (555)
Q Consensus 285 ~~l~~~l~-~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~ 335 (555)
..+...+. ..|-++++|+... .+.+..+...+. .|..+|+||-+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 11222332 5788999999976 565666655543 56789999886544
No 305
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.06 E-value=0.01 Score=56.78 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=34.9
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEE
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCF 247 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 247 (555)
.+|...+....+...+|+|+|.||+|||||...+...+.++...+..
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaV 84 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAV 84 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEE
Confidence 34444454445667899999999999999999999988766543333
No 306
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.04 E-value=0.019 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|+|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998865
No 307
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.03 E-value=0.015 Score=59.73 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=33.3
Q ss_pred CcccchhhHHHHHhhhc-------cc-C------CCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 192 SFVGLNSRIEEMKSLMC-------LE-S------HDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~-------~~-~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+|.+...+.|...+. .. . -....+.++|++|+|||+||+.++..+.
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46777777776644331 00 0 0135689999999999999999997664
No 308
>PTZ00301 uridine kinase; Provisional
Probab=96.02 E-value=0.0056 Score=56.87 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=23.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..+|+|.|++|+||||||..+..++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999998776443
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.031 Score=56.42 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..+++++|++|+||||++..++......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999875433
No 310
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.01 E-value=0.035 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=20.0
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|+|.|++|+||||+|..++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 311
>PRK14532 adenylate kinase; Provisional
Probab=95.98 E-value=0.019 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|.|.|++|+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998765
No 312
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.98 E-value=0.033 Score=48.53 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=55.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCC-chhHHHHHHhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTP-TIPQNIRKRLQ 292 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~l~~~l~~~l~ 292 (555)
..+++|.|+.|.|||||++.++..... ..+.+++.......--.. .+.. .-.-.+.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHh
Confidence 468999999999999999998765432 234444431100000000 0111 11122346666
Q ss_pred cCceEEEEeCCCC--cHHHHHHHhcCCCCCCCCceEEEEeCchhhhh
Q 043805 293 RIKVLIVLDDVHD--GFTQLENLVGGSDKFSPGSRIIITTRDKRVLD 337 (555)
Q Consensus 293 ~~~~LlVlDdv~~--~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~ 337 (555)
.++-++++|+-.. +......+...+... +..+|++|.+.....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7888999999843 123333332222211 246777877665443
No 313
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.98 E-value=0.03 Score=54.82 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..++++|+|++|+||||++..++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999877543
No 314
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.98 E-value=0.0066 Score=56.71 Aligned_cols=27 Identities=41% Similarity=0.688 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.++.+|+|.|++|+|||||+..++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 315
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.97 E-value=0.13 Score=54.82 Aligned_cols=49 Identities=27% Similarity=0.439 Sum_probs=38.7
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.++|....++++.+.+..-......|.|+|.+|+||+.+|+.+.+.-
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 3458999999998888775322334578999999999999999987653
No 316
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.97 E-value=0.051 Score=52.98 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=29.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
..++.|.|++|+|||+++.+++...... ...++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4688999999999999999998876544 45666665
No 317
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.95 E-value=0.13 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.++..|+|..|+|||||...++..
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhh
Confidence 578899999999999999988754
No 318
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.94 E-value=0.059 Score=48.82 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=61.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHh--CC-------------ccCC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVL--GE-------------NLKI 278 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~-------------~~~~ 278 (555)
...++|.|+.|+|||||++.++-.... ..+.+++.... +.......-.... .. ....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVP-------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEE-------HHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 458999999999999999998865432 23444443110 0000000000000 00 0011
Q ss_pred CCCc-hhHHHHHHhccCceEEEEeCCCC--cHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhcCCCeEEEe
Q 043805 279 GTPT-IPQNIRKRLQRIKVLIVLDDVHD--GFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKCGVDNIFEV 347 (555)
Q Consensus 279 ~~~~-l~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l 347 (555)
+..+ -.-.+.+.+-.++-++++|+-.. +....+.+...+.....+..||++|.+...... ....+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1111 11234556667889999999843 122222222222111135678888887765543 3455544
No 319
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.93 E-value=0.018 Score=63.23 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=55.4
Q ss_pred HHHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCC-
Q 043805 201 EEMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKI- 278 (555)
Q Consensus 201 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~- 278 (555)
..|..+|. .+=...+++.|+|++|+|||+|+.+++.........++|+.. ...... ..+..++-+....
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~----E~t~~~-----~~A~~lGvDl~~ll 116 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA----EHALDP-----DYAKKLGVDTDSLL 116 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC----ccchhH-----HHHHHcCCChhHeE
Confidence 34455554 233446889999999999999999988766555566777762 111111 2333333222111
Q ss_pred -----CCCchhHHHHHHhc-cCceEEEEeCCC
Q 043805 279 -----GTPTIPQNIRKRLQ-RIKVLIVLDDVH 304 (555)
Q Consensus 279 -----~~~~l~~~l~~~l~-~~~~LlVlDdv~ 304 (555)
..+.....+...+. +..-|||+|.+.
T Consensus 117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 117 VSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 22333334444443 356799999984
No 320
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.91 E-value=0.011 Score=53.49 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=27.7
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
...+++|.|++|+||||+++.++..+........++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 346899999999999999999998876443233444
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.91 E-value=0.029 Score=50.97 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=61.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc--ccC---hHHHHHHHHHHHhCCcc------CCCCC-
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN--KMG---VIHVRDEVISRVLGENL------KIGTP- 281 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~---~~~~~~~ll~~~~~~~~------~~~~~- 281 (555)
..+++|.|+.|+|||||++.++-.... ..+.+++.... ... ... ......+++..+..... ..+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-LASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-CCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 468999999999999999998865433 34445543110 100 000 01111112333221110 11111
Q ss_pred chhHHHHHHhccCceEEEEeCCCC--cHHHHHHHhcCCCCC-CC-CceEEEEeCchhhh
Q 043805 282 TIPQNIRKRLQRIKVLIVLDDVHD--GFTQLENLVGGSDKF-SP-GSRIIITTRDKRVL 336 (555)
Q Consensus 282 ~l~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~l~~~~~~~-~~-~~~iliTsR~~~~~ 336 (555)
.-.-.+.+.+...+-++++|+-.. +......+...+... .. +..+|++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 112234566777899999999843 123333332222111 12 56788888776544
No 322
>PLN02674 adenylate kinase
Probab=95.90 E-value=0.029 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+.|.|++|+||||++..++...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899999999999999988765
No 323
>PRK04040 adenylate kinase; Provisional
Probab=95.90 E-value=0.0082 Score=54.89 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+|+|+|++|+||||+++.++..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998874
No 324
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.028 Score=54.31 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=35.7
Q ss_pred hhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 205 SLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 205 ~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.+|..+-+..+++=|+|+.|+|||++|.+++-.........+|++
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 344333345788899999999999999999988777777888887
No 325
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.88 E-value=0.077 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.0
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhc
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
++.|+|.+|+||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987753
No 326
>PTZ00035 Rad51 protein; Provisional
Probab=95.88 E-value=0.043 Score=55.07 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=28.3
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..|.++|..+=....++.|+|++|+|||+|+.+++-..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 34555554333446789999999999999999987644
No 327
>PF13245 AAA_19: Part of AAA domain
Probab=95.87 E-value=0.01 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=19.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+++.|.|++|.|||+++.+.+..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999997666665544
No 328
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.07 Score=54.36 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=23.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999998765
No 329
>PRK15115 response regulator GlrR; Provisional
Probab=95.86 E-value=0.26 Score=51.88 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=34.2
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..++|+...+..+.+...........+.|+|.+|+|||++|..+.+...
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~ 182 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASP 182 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcC
Confidence 3578887777766654432222335678999999999999998776543
No 330
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.86 E-value=0.021 Score=50.97 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=59.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCC-chhHHHHHHhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTP-TIPQNIRKRLQ 292 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~l~~~l~~~l~ 292 (555)
...++|.|+.|+|||||.+.++-.... ..+.+++... .... ...... ...........+.. .-.-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~-~~~~-~~~~~~----~~~~i~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGK-EVSF-ASPRDA----RRAGIAMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-ECCc-CCHHHH----HhcCeEEEEecCHHHHHHHHHHHHHh
Confidence 458999999999999999998865432 3444554321 0100 001000 00000000001111 12223456667
Q ss_pred cCceEEEEeCCCC--cHHHHHHHhcCCCCC-CCCceEEEEeCchhhhh
Q 043805 293 RIKVLIVLDDVHD--GFTQLENLVGGSDKF-SPGSRIIITTRDKRVLD 337 (555)
Q Consensus 293 ~~~~LlVlDdv~~--~~~~~~~l~~~~~~~-~~~~~iliTsR~~~~~~ 337 (555)
..+-++++|+-.. +......+...+... ..+..+|++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7889999999843 123333332222111 13667888888765433
No 331
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.1 Score=55.54 Aligned_cols=178 Identities=17% Similarity=0.188 Sum_probs=96.9
Q ss_pred CCCCcccchhhHHHHHhhhc---ccC-------CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMC---LES-------HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM 258 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~---~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 258 (555)
.....-|.++..+++.+.+. ... .-++-+.++||+|.|||.||++++-...-.| +. .+..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~----iSGS- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISGS- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee----ccch-
Confidence 34567888877666666543 211 1267789999999999999999987654332 11 0110
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCCCCC--
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSDKFS-- 321 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~~~~-- 321 (555)
++ +.... +.+...+.+...+...+-|+++++|.++.. ...+.+++.....++
T Consensus 218 ~F-------VemfV----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 DF-------VEMFV----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hh-------hhhhc----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 00 11111 123334445555666777999999998651 113556665555444
Q ss_pred CCceEEEEeCchhhh-----hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchH
Q 043805 322 PGSRIIITTRDKRVL-----DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLA 390 (555)
Q Consensus 322 ~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 390 (555)
.+.-|+..|-.++++ .....+..+.++..+...-.+.+.-++-....... .+ ...|++.+-|.-.|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~--Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED--VD-LKKIARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc--CC-HHHHhhhCCCcccc
Confidence 233333333333332 22234566777777767777777755522222211 11 22366777666433
No 332
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.85 E-value=0.038 Score=55.30 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..|.++|..+-....++.|+|++|+|||+|+.+++..
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 3444555433334678889999999999999988854
No 333
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.84 E-value=0.012 Score=58.12 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=39.5
Q ss_pred CCCCcccchhhHHHHH---hhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceE
Q 043805 189 DLDSFVGLNSRIEEMK---SLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKC 246 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~---~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 246 (555)
....+||....-+..- +++..+.=..+.+.+.|++|.|||+||..+++.+....|...
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 3578999887665543 344433334689999999999999999999999987765443
No 334
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.80 E-value=0.02 Score=57.83 Aligned_cols=102 Identities=15% Similarity=0.231 Sum_probs=55.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
.++-+-|+|+.|.|||.|+-.+++.+...-...+.+. .+..-...-+..+.+ ...-...+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~~~~------~~~~l~~va~~l~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQLRG------QDDPLPQVADELA 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHHHhC------CCccHHHHHHHHH
Confidence 4677889999999999999999987654222111111 111111122222221 1122334446667
Q ss_pred cCceEEEEeCCC--Cc--HHHHHHHhcCCCCCCCCceEEEEeC
Q 043805 293 RIKVLIVLDDVH--DG--FTQLENLVGGSDKFSPGSRIIITTR 331 (555)
Q Consensus 293 ~~~~LlVlDdv~--~~--~~~~~~l~~~~~~~~~~~~iliTsR 331 (555)
++..||+||++. +. .-.+..|+..+- ..|+.+|.||-
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 777899999983 31 122444444432 25655555553
No 335
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.80 E-value=0.0069 Score=54.20 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEecCcchhHHHHHHHHHhhhc
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
+.|+|++|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988754
No 336
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.78 E-value=0.082 Score=47.29 Aligned_cols=126 Identities=12% Similarity=0.091 Sum_probs=61.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEech---hhccccCh--HHHHHHHHHHHhCCccCCCCC-chhHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVR---EESNKMGV--IHVRDEVISRVLGENLKIGTP-TIPQNI 287 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~-~l~~~l 287 (555)
...++|.|+.|.|||||++.++-..... .+.+++.... -..+...+ ..+...+.-. .....+.. .-.-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 4589999999999999999998754322 2222221100 00111111 1112221100 11112111 222234
Q ss_pred HHHhccCceEEEEeCCCC--cHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhcCCCeEEEe
Q 043805 288 RKRLQRIKVLIVLDDVHD--GFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKCGVDNIFEV 347 (555)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~--~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l 347 (555)
.+.+-.++-++++|+-.. +......+...+... +..+|++|.+..... ...+.+.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 566677889999999843 123333332222221 356777777765433 23444444
No 337
>PRK05973 replicative DNA helicase; Provisional
Probab=95.77 E-value=0.015 Score=54.86 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=29.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...+++|.|.+|+|||+++.+++.....+...++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999999999987655555566654
No 338
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.077 Score=50.43 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=24.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
.++-|.++|.+|.|||-||++++++-...|
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 356788999999999999999998765443
No 339
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.76 E-value=0.0083 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+++.++|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987754
No 340
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.76 E-value=0.0097 Score=55.46 Aligned_cols=28 Identities=39% Similarity=0.589 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+...+++|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999987654
No 341
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.03 Score=51.42 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.2
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
-..|.|+||+|||||.+.+++-+...
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhcc
Confidence 36789999999999999999876554
No 342
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.76 E-value=0.011 Score=52.97 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=27.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh-cCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS-RDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 249 (555)
..+.+.||.|+|||.||+.+++.+. ......+-+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 5788999999999999999999877 4444444443
No 343
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.75 E-value=0.008 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...|.|+|++|+||||+|..++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998863
No 344
>PRK06217 hypothetical protein; Validated
Probab=95.75 E-value=0.039 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.6
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|+|.|.+|+|||||+++++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 345
>PRK03839 putative kinase; Provisional
Probab=95.75 E-value=0.0078 Score=54.70 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=21.6
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 346
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.74 E-value=0.019 Score=54.48 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=33.8
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|.+.|..+=.....+.|.|++|+|||+|+.+++.........++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444322234678999999999999999998875544555677765
No 347
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.73 E-value=0.031 Score=50.60 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=60.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHh----CCc--c-CCCC------
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVL----GEN--L-KIGT------ 280 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~--~-~~~~------ 280 (555)
...|.|+|..|-||||.|...+.+...+.-.+..+.-+.... ..+-...+..+ ..+. +.. . ....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHHH
Confidence 468889999999999999999887765544444443333221 11222222221 0000 000 0 0000
Q ss_pred -CchhHHHHHHhccCc-eEEEEeCCCC----cHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 281 -PTIPQNIRKRLQRIK-VLIVLDDVHD----GFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 281 -~~l~~~l~~~l~~~~-~LlVlDdv~~----~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
.......++.+...+ =|||||.+-. ..-..+.++..+...+++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 011222334444444 5999999832 0111233333333334788999999975
No 348
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.0077 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.7
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+|+|.|++|+||||+|+.++....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 589999999999999999998764
No 349
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.73 E-value=0.0073 Score=57.17 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=32.5
Q ss_pred HHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 203 MKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 203 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
|.+.|..+=....+++|.|++|+|||+|+.+++...... -..++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 344443222335689999999999999999999766555 56677765
No 350
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.72 E-value=0.035 Score=58.52 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=64.0
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccC
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLK 277 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 277 (555)
..++.+..++. ...++++|+|+.|+||||+...+...+.......+-+.+..+ ..+.. + .+.. ...
T Consensus 229 ~~~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE----~~~~~----~-~q~~--v~~ 294 (486)
T TIGR02533 229 ELLSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE----YQIEG----I-GQIQ--VNP 294 (486)
T ss_pred HHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee----eecCC----C-ceEE--Ecc
Confidence 34455555553 234589999999999999999888776543223333321100 00000 0 0000 000
Q ss_pred CCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEe
Q 043805 278 IGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 278 ~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
.........++..|+..|=.|++.++.+ .+.....+.... .| +.++||
T Consensus 295 ~~g~~f~~~lr~~LR~dPDvI~vGEiRd-~eta~~a~~aa~---tG-HlvlsT 342 (486)
T TIGR02533 295 KIGLTFAAGLRAILRQDPDIIMVGEIRD-LETAQIAIQASL---TG-HLVLST 342 (486)
T ss_pred ccCccHHHHHHHHHhcCCCEEEEeCCCC-HHHHHHHHHHHH---hC-CcEEEE
Confidence 0112456778889999999999999987 555544443321 33 445555
No 351
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.24 Score=49.59 Aligned_cols=58 Identities=17% Similarity=-0.010 Sum_probs=38.7
Q ss_pred CCeEEEeecCChHHHHHHHHHHhhccCCC-ChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 341 VDNIFEVKGLQHSKALELFCRKAFRQNNR-SHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 341 ~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
...+++++..+.+|+.+++.-.....-.. ....++--.++.-..+|||-.++.++.++
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 45678999999999999887665221111 00113445678888899997777776654
No 352
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.078 Score=53.28 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=28.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.++++|+|+.|+||||++..++..+......+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999987655444455544
No 353
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.013 Score=53.93 Aligned_cols=30 Identities=40% Similarity=0.552 Sum_probs=26.6
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+.+.+|+|.|.+|+||||+|+.+...+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346799999999999999999999988755
No 354
>PRK02496 adk adenylate kinase; Provisional
Probab=95.71 E-value=0.028 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.5
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.|.|++|+||||+++.++...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 355
>PRK06547 hypothetical protein; Provisional
Probab=95.71 E-value=0.0097 Score=53.48 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
....+|+|.|++|+||||+|..++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998864
No 356
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.67 E-value=0.057 Score=53.97 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHhccCceEEEEeCCCCcHHH--HHHHhcCCCCC--CCCceEEEEeCchhhhhhcCCCeEEEe
Q 043805 285 QNIRKRLQRIKVLIVLDDVHDGFTQ--LENLVGGSDKF--SPGSRIIITTRDKRVLDKCGVDNIFEV 347 (555)
Q Consensus 285 ~~l~~~l~~~~~LlVlDdv~~~~~~--~~~l~~~~~~~--~~~~~iliTsR~~~~~~~~~~~~~~~l 347 (555)
..|.+.++.++-+++.|.+...++. ...++..+... ..+..+++.|+.+++...+.++..+-+
T Consensus 516 ~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~v 582 (593)
T COG2401 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILV 582 (593)
T ss_pred HHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEe
Confidence 3466778888899999998441221 11112111111 146677777777777777665554433
No 357
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.67 E-value=0.012 Score=53.30 Aligned_cols=26 Identities=42% Similarity=0.590 Sum_probs=22.8
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999887643
No 358
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.67 E-value=0.08 Score=46.80 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=28.4
Q ss_pred cchhhHHHHHhhhcccC-CCeEEEEEEecCcchhHHHHHHHHH
Q 043805 195 GLNSRIEEMKSLMCLES-HDVRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 195 GR~~el~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
|.+..++.+.+.+.... .....+++.|++|+|||||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 45555555555443111 2245678999999999999999875
No 359
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.64 E-value=0.2 Score=52.68 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..++|+...++.+...+..-......+.|+|..|+||+++|+.+....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s 186 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS 186 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 458999888888877665322233456799999999999999887654
No 360
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.63 E-value=0.0073 Score=58.88 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=61.8
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISR 270 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 270 (555)
+.+.-.....+.+.+.|...-...+.++|+|+.|+||||++..++..+...-...+-+.+..+...+.. ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~---------~~ 174 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGP---------NQ 174 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCS---------SE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeeccc---------ce
Confidence 444444444455555554321235789999999999999999999877655233333331111100000 00
Q ss_pred HhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHH
Q 043805 271 VLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLEN 312 (555)
Q Consensus 271 ~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~ 312 (555)
.. ...........+.+...|+..+=.++++++.+ .+....
T Consensus 175 ~~-~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~-~e~~~~ 214 (270)
T PF00437_consen 175 IQ-IQTRRDEISYEDLLKSALRQDPDVIIIGEIRD-PEAAEA 214 (270)
T ss_dssp EE-EEEETTTBSHHHHHHHHTTS--SEEEESCE-S-CHHHHH
T ss_pred EE-EEeecCcccHHHHHHHHhcCCCCcccccccCC-HhHHHH
Confidence 00 00001345667778888999999999999977 455555
No 361
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.62 E-value=0.0096 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.++++|.|++|+||||+++.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 362
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.62 E-value=0.017 Score=56.89 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=38.3
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
|...+.|+=..+.+..+..++.. .+.|.|.|++|+|||+++.+++..+...
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 34445666666677777777752 2468999999999999999999987644
No 363
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.61 E-value=0.083 Score=58.75 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=66.4
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccC
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLK 277 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 277 (555)
....+|.+.+. ..+++.|.|+.|+||||-.-+++.+..-.....+-+..-+ .-....+...+...++....+
T Consensus 53 ~~~~~i~~ai~----~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPR----RlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 53 AVRDEILKAIE----QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPR----RLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHH----hCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCch----HHHHHHHHHHHHHHhCCCcCc
Confidence 45556666654 3468999999999999999998876543333344443222 222334455555555543221
Q ss_pred C-----------CCCch-----hHHHHHHhcc-----CceEEEEeCCCCcHHHHH----HHhcCCCCCCCCceEEEEeCc
Q 043805 278 I-----------GTPTI-----PQNIRKRLQR-----IKVLIVLDDVHDGFTQLE----NLVGGSDKFSPGSRIIITTRD 332 (555)
Q Consensus 278 ~-----------~~~~l-----~~~l~~~l~~-----~~~LlVlDdv~~~~~~~~----~l~~~~~~~~~~~~iliTsR~ 332 (555)
. +.... -..|.+.+.+ +=-.+|+|.+++-.-..+ .+...+....+..+|||+|=.
T Consensus 125 ~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 125 TVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred eeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 1 11100 0123333332 234899999965111111 111112222235899999864
No 364
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.61 E-value=0.012 Score=52.66 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=31.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...|.|-|++|+|||+|..+.+..++++|...+.-.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 378999999999999999999999998887766654
No 365
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.53 Score=45.96 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=43.9
Q ss_pred cCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhhc-CCCeEEEeecCChHHHHHHHHH
Q 043805 293 RIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDKC-GVDNIFEVKGLQHSKALELFCR 361 (555)
Q Consensus 293 ~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Ll~~ 361 (555)
+++-++|+|+++. .......|+..+...++++.+|++|.+. .+++.. .....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 4556999999965 2456777877777666667777766554 343332 3456777766 66666666643
No 366
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.60 E-value=0.1 Score=50.07 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=25.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHH--hhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH--QISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~ 249 (555)
+-+.+|+||.|+|||+|.+.+.. .+..--+.++|+.
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFIt 124 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFIT 124 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEEC
Confidence 45677899999999999999875 2333344556654
No 367
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.59 E-value=0.033 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..++|+|++|+|||+||+.++..+.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4789999999999999999997664
No 368
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.59 E-value=0.023 Score=56.00 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=34.9
Q ss_pred HHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|...|. .+-+..+++-|+|+.|+||||||.++...........+|+.
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 4444553 22223578999999999999999999988776666777776
No 369
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.58 E-value=0.17 Score=49.83 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=31.6
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
-..-+|..+-.--.++|. .+....|.+.|.+|.|||-||.+.+-
T Consensus 224 wGi~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 224 WGIRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred hccCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHH
Confidence 345566666554444443 35688999999999999999987653
No 370
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.57 E-value=0.027 Score=53.23 Aligned_cols=37 Identities=32% Similarity=0.357 Sum_probs=25.1
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+.+...+.. ..+..|+|+||.|||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 344555555531 1278899999999999888888776
No 371
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.12 Score=57.59 Aligned_cols=102 Identities=11% Similarity=0.202 Sum_probs=65.2
Q ss_pred CcccchhhHHHHHhhhcccC----C--CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHH
Q 043805 192 SFVGLNSRIEEMKSLMCLES----H--DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRD 265 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~----~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 265 (555)
..+|.++.+..+.+.+.... + ....+.+.||.|+|||.||++++..+-...+..+-+. +. ....
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-ms---------e~~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MS---------EFQE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hh---------hhhh
Confidence 45777777777777665211 1 3557888999999999999999988765544444443 11 1111
Q ss_pred HHHHHHhCCccCCCCCchhHHHHHHhccCce-EEEEeCCCC
Q 043805 266 EVISRVLGENLKIGTPTIPQNIRKRLQRIKV-LIVLDDVHD 305 (555)
Q Consensus 266 ~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~-LlVlDdv~~ 305 (555)
...+.+..++.-.......|.+.++.+|+ +|.|||++.
T Consensus 633 --vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred --hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 33444444433333444566788888875 788999964
No 372
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.56 E-value=0.02 Score=62.10 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEEechhhccccChHHHH
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
||...+.++|.++.++.|...+... +.+.++|++|+|||++++.+++.+... +....|+.+ .......++
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~ 96 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKI 96 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHH
Confidence 3445578999999999988877532 468899999999999999999876433 456677653 333444444
Q ss_pred HHHHHH
Q 043805 265 DEVISR 270 (555)
Q Consensus 265 ~~ll~~ 270 (555)
+.+...
T Consensus 97 ~~v~~~ 102 (637)
T PRK13765 97 RTVPAG 102 (637)
T ss_pred HHHHHh
Confidence 444433
No 373
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.56 E-value=0.023 Score=55.52 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCCCCCcccchhhHHH---HHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCc
Q 043805 187 STDLDSFVGLNSRIEE---MKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQG 244 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 244 (555)
-...+.|||....-+. +.++...+.-..+.|++.||+|.|||+||..+++.+...-+.
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 3456789998765443 344555444457899999999999999999999999876443
No 374
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.56 E-value=0.019 Score=53.09 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=29.3
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+.+++|+|++|+|||||++.+...+.......+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34679999999999999999999987755433445553
No 375
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.069 Score=55.97 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=33.4
Q ss_pred cccchhhHHHHHhhhccc----CCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 193 FVGLNSRIEEMKSLMCLE----SHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.-++...+..|.+.+... -...++++|+|++|+||||++..++..+...
T Consensus 325 ~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 325 HRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred hhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344555555665544311 1235789999999999999999998866543
No 376
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.55 E-value=0.037 Score=57.06 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=68.0
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccC
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLK 277 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 277 (555)
...+.+.+++. ...+++.++||.|+||||..-.+...+......++=+.+--+. ...++ .+--..+ +
T Consensus 245 ~~~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~-~~~gI-------~Q~qVN~--k 311 (500)
T COG2804 245 FQLARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY-QLPGI-------NQVQVNP--K 311 (500)
T ss_pred HHHHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee-ecCCc-------ceeeccc--c
Confidence 34555555554 4467999999999999999999988776554443333211000 00000 0000000 0
Q ss_pred CCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeC
Q 043805 278 IGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTR 331 (555)
Q Consensus 278 ~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR 331 (555)
-.-.....++..|++.|=+|.+..+.+ .+..+-..... --+++++||=
T Consensus 312 -~gltfa~~LRa~LRqDPDvImVGEIRD-~ETAeiavqAa----lTGHLVlSTl 359 (500)
T COG2804 312 -IGLTFARALRAILRQDPDVIMVGEIRD-LETAEIAVQAA----LTGHLVLSTL 359 (500)
T ss_pred -cCCCHHHHHHHHhccCCCeEEEeccCC-HHHHHHHHHHH----hcCCeEeeec
Confidence 112345677888999999999999987 66655554443 2236666663
No 377
>PRK00625 shikimate kinase; Provisional
Probab=95.54 E-value=0.01 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 378
>PRK14526 adenylate kinase; Provisional
Probab=95.53 E-value=0.045 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
++|.|++|+||||++..++...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988654
No 379
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.52 E-value=0.027 Score=55.99 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=26.8
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.++..+|+|+|++|+|||||+..+...+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999998887654
No 380
>PRK14529 adenylate kinase; Provisional
Probab=95.49 E-value=0.038 Score=51.72 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=49.8
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcCC-CceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccC-
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRDF-QGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRI- 294 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~- 294 (555)
|+|.|++|+||||+++.++..+.-.+ ..+-.+.. .......+....+.++ ....-+..+.+...+.+.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~t~lg~~i~~~i----~~G~lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGGTELGKKAKEYI----DRGDLVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCCChHHHHHHHHH----hccCcchHHHHHHHHHHHHhccC
Confidence 77899999999999999988764221 11111110 0111112222233332 2222234444555566666432
Q ss_pred ceEEEEeCCCCcHHHHHHHh
Q 043805 295 KVLIVLDDVHDGFTQLENLV 314 (555)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~l~ 314 (555)
..=+|||.+-....+.+.|.
T Consensus 77 ~~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 77 KNGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred CCcEEEeCCCCCHHHHHHHH
Confidence 34599999955466666553
No 381
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.48 E-value=0.036 Score=50.00 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=25.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
..+++|.|+.|+|||||++.++-.... ..+.+.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRL 61 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEE
Confidence 458999999999999999999865432 2344444
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.47 E-value=0.05 Score=55.92 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=27.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
.+.+|.++|++|+||||++..++..++.....+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999998776543333333
No 383
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.46 E-value=0.25 Score=51.55 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh-cCCCceEEEEechhhccccChHHHHHHHHHHHh
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS-RDFQGKCFVADVREESNKMGVIHVRDEVISRVL 272 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 272 (555)
+..|.+++. +-....++.|.|.+|+|||+++.+++..+. .+...++|+. -......+...++....
T Consensus 181 ~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 181 LPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASKS 247 (421)
T ss_pred ChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHHc
Confidence 444444443 223456899999999999999999997664 3333445543 22344455555555443
No 384
>PRK15453 phosphoribulokinase; Provisional
Probab=95.45 E-value=0.02 Score=54.94 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
....+|+|+|.+|+||||++..+++.++........+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi 39 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVV 39 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEE
Confidence 3467999999999999999999998775433233343
No 385
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.44 E-value=0.046 Score=56.45 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+.++.++|++|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999998764
No 386
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.44 E-value=0.28 Score=51.94 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..++|....+.++.+.+.........+.|.|.+|+||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 3588888777777766643333345678999999999999988876543
No 387
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.43 E-value=0.041 Score=49.70 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=58.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEec--hhhccccChHHHHHHHHHHHhCCccCCCC-CchhHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADV--REESNKMGVIHVRDEVISRVLGENLKIGT-PTIPQNIRKR 290 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~l~~~l~~~ 290 (555)
..+++|.|+.|+|||||++.++...... .+.+.+... .-..+... .+. ..-.-.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHH
Confidence 4589999999999999999888654332 333333210 00000000 000 1112234466
Q ss_pred hccCceEEEEeCCCC--cHHHHHH---HhcCCCCCCCCceEEEEeCchhhhhhcCCCeEEEee
Q 043805 291 LQRIKVLIVLDDVHD--GFTQLEN---LVGGSDKFSPGSRIIITTRDKRVLDKCGVDNIFEVK 348 (555)
Q Consensus 291 l~~~~~LlVlDdv~~--~~~~~~~---l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~ 348 (555)
+..++-++++|+-.. +...... ++..+.. ..+..+|++|.+....... ....+.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 667888999999843 1222222 2222211 1225677777776544432 23444443
No 388
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.40 E-value=0.02 Score=54.25 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=27.1
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
.+.+.+++|.|++|+|||||+..++..+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 34578999999999999999999998776543
No 389
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.40 E-value=0.01 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998764
No 390
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.39 E-value=0.091 Score=52.43 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEecCcchhHHHHHHHHHhhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
++++|++|+||||++..+...+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998775
No 391
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.38 E-value=0.088 Score=48.25 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.8
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.++.|.|++|+|||+++.+++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47889999999999999999987653
No 392
>PHA02244 ATPase-like protein
Probab=95.37 E-value=0.014 Score=58.30 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=32.0
Q ss_pred CCCcccchhhHHHH----HhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 190 LDSFVGLNSRIEEM----KSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 190 ~~~fvGR~~el~~l----~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...|+|....+..+ .+++.. ...|.|+|++|+|||+||.++++...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34577766555433 334332 23578899999999999999998754
No 393
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.35 E-value=0.017 Score=52.62 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
.++++|+|++|+|||||+..+.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 36899999999999999999999888777544444
No 394
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.32 E-value=0.22 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+.|+|.|.+|+|||||+..++....
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999999999999999987543
No 395
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.31 E-value=0.083 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.|.|.+|+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998765
No 396
>PRK05439 pantothenate kinase; Provisional
Probab=95.31 E-value=0.021 Score=56.14 Aligned_cols=30 Identities=37% Similarity=0.407 Sum_probs=25.4
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
...+-+|+|.|.+|+||||+|..+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345779999999999999999999886654
No 397
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.31 E-value=0.015 Score=54.03 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.3
Q ss_pred cCCCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 210 ESHDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 210 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.....+.++|+|++|+|||||+..+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445788999999999999999998653
No 398
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.13 Score=51.37 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=66.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh-
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL- 291 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l- 291 (555)
..+-|..+||||.|||-.|++++..-.-+|. +. . ..+ +..+-.+.... ...+..|.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA--~m-T----GGD---VAPlG~qaVTk-------------iH~lFDWak 439 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYA--IM-T----GGD---VAPLGAQAVTK-------------IHKLFDWAK 439 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCcee--hh-c----CCC---ccccchHHHHH-------------HHHHHHHHh
Confidence 3678999999999999999999976543331 11 0 000 00000011100 11111332
Q ss_pred -ccCceEEEEeCCCC-------------cHHHHHHHhcCCCCCCCCce-EEEEeCchhhhhh--cCCCeEEEeecCChHH
Q 043805 292 -QRIKVLIVLDDVHD-------------GFTQLENLVGGSDKFSPGSR-IIITTRDKRVLDK--CGVDNIFEVKGLQHSK 354 (555)
Q Consensus 292 -~~~~~LlVlDdv~~-------------~~~~~~~l~~~~~~~~~~~~-iliTsR~~~~~~~--~~~~~~~~l~~L~~~e 354 (555)
..+..||++|..+. .-..+..|+-.-...+.... +|.|.|..++-.. ...+..++.+....+|
T Consensus 440 kS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEE 519 (630)
T KOG0742|consen 440 KSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEE 519 (630)
T ss_pred hcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHH
Confidence 24678999998854 11234444432222222223 3344454433222 2245667777777788
Q ss_pred HHHHHHHHh
Q 043805 355 ALELFCRKA 363 (555)
Q Consensus 355 a~~Ll~~~~ 363 (555)
-..|+..++
T Consensus 520 Rfkll~lYl 528 (630)
T KOG0742|consen 520 RFKLLNLYL 528 (630)
T ss_pred HHHHHHHHH
Confidence 888887665
No 399
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.30 E-value=0.023 Score=61.10 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=40.6
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
+..+-|.+..+.|.++.........+|+|+|++|+||||+|+.++..+..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 45677888888888777655555678999999999999999999998764
No 400
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.30 E-value=0.031 Score=52.82 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=33.7
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|.+.|..+-....++.|.|.+|+|||+++.+++......-..++|+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344444322234678999999999999999999987554545566655
No 401
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.29 E-value=0.066 Score=53.23 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 201 EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 201 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..|..+|..+-....++.|+|++|+|||+|+.+++..
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 3444445433334678999999999999999998863
No 402
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.09 Score=47.37 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=25.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
...++|.|+.|+|||||++.++-.... ..+.+++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 59 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKV 59 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEE
Confidence 468999999999999999998765432 2344444
No 403
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.28 E-value=0.044 Score=55.69 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=35.3
Q ss_pred CcccchhhHHHHHhhhccc------------CCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 192 SFVGLNSRIEEMKSLMCLE------------SHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.++|.++..+.+.-.+... ...++-+.++|++|+|||+||+.++..+...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4677777766665444310 1124678999999999999999999876543
No 404
>PRK10436 hypothetical protein; Provisional
Probab=95.28 E-value=0.064 Score=56.01 Aligned_cols=113 Identities=14% Similarity=0.238 Sum_probs=63.4
Q ss_pred hHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCC
Q 043805 199 RIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKI 278 (555)
Q Consensus 199 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 278 (555)
.++.+.+++. ...+.+.|+|+.|+||||....+...+.......+-+.+. -+ ..+. .+ .+.. ....
T Consensus 206 ~~~~l~~~~~---~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDP---vE-~~l~----gi-~Q~~--v~~~ 271 (462)
T PRK10436 206 QLAQFRQALQ---QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDP---VE-IPLA----GI-NQTQ--IHPK 271 (462)
T ss_pred HHHHHHHHHH---hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCC---cc-ccCC----Cc-ceEe--eCCc
Confidence 4455555553 2346899999999999999887776654332222222211 00 0000 00 0000 0001
Q ss_pred CCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEe
Q 043805 279 GTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 279 ~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
........++..|+..|=.|++.++.+ .+.....+.... .| ++++||
T Consensus 272 ~g~~f~~~lr~~LR~dPDvI~vGEIRD-~eta~~al~AA~---TG-HlVlsT 318 (462)
T PRK10436 272 AGLTFQRVLRALLRQDPDVIMVGEIRD-GETAEIAIKAAQ---TG-HLVLST 318 (462)
T ss_pred cCcCHHHHHHHHhcCCCCEEEECCCCC-HHHHHHHHHHHH---cC-CcEEEe
Confidence 123567788899999999999999987 565554443321 23 556665
No 405
>PRK13947 shikimate kinase; Provisional
Probab=95.26 E-value=0.014 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.7
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|.|.|++|+||||+++.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998874
No 406
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.26 E-value=0.36 Score=50.92 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..++|....+..+.+.+.........+.|.|..|+||+++|..+.....
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~ 191 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR 191 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCC
Confidence 3477877777777665543223345688999999999999998876443
No 407
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.25 E-value=0.015 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987654
No 408
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.24 E-value=0.1 Score=55.48 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=69.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC--------ceEEEEech-hhccccCh------------HHHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ--------GKCFVADVR-EESNKMGV------------IHVRDEVISRVL 272 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--------~~~~~~~~~-~~~~~~~~------------~~~~~~ll~~~~ 272 (555)
...|+|.|+.|+|||||.+-++......-. ...|+..-. .......+ ....+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 457899999999999999999665433200 111111100 00000011 233334444443
Q ss_pred CCccCC--------CCCchhHHHHHHhccCceEEEEeCCCC--cHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhcCCC
Q 043805 273 GENLKI--------GTPTIPQNIRKRLQRIKVLIVLDDVHD--GFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKCGVD 342 (555)
Q Consensus 273 ~~~~~~--------~~~~l~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~ 342 (555)
-..... +-+...-.+...+-.++=+||||.=.+ +.+..+.|...+..+ +| .||+.|-++.+..... .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-c
Confidence 322211 112223334556667889999998743 344555444433322 34 6788888887766653 4
Q ss_pred eEEEeec
Q 043805 343 NIFEVKG 349 (555)
Q Consensus 343 ~~~~l~~ 349 (555)
.++.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 5555554
No 409
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.23 E-value=0.021 Score=54.14 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=28.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
....+.|.|++|+|||+|+.+++.....+...++++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3468999999999999999988876644445556654
No 410
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.014 Score=51.17 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=18.5
Q ss_pred EEEEEecCcchhHHHHHHHH
Q 043805 216 IVGIWGMGGVGKTTIASVVF 235 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~ 235 (555)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999887
No 411
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.21 E-value=0.027 Score=52.08 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=44.6
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCcc-C---CCCCchhHHH
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENL-K---IGTPTIPQNI 287 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~---~~~~~l~~~l 287 (555)
+.+.++.+.|.+|+|||+++..+...+. ....+.+. .......... ...+... ..... . .....+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~---~~~~~~~-~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPD---YDELLKA-DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTT---HHHHHHH-HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccc---hhhhhhh-hhhhhHHHHHHHHHHHHHHH
Confidence 4578899999999999999999987764 23444443 2222111111 1111111 11000 0 0112233444
Q ss_pred HHHhccCceEEEEeCCCCcHHHHHHHhc
Q 043805 288 RKRLQRIKVLIVLDDVHDGFTQLENLVG 315 (555)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~~~~~~~~l~~ 315 (555)
.+..-.++.=+|+|..-........++.
T Consensus 86 ~~~a~~~~~nii~E~tl~~~~~~~~~~~ 113 (199)
T PF06414_consen 86 IEYAIENRYNIIFEGTLSNPSKLRKLIR 113 (199)
T ss_dssp HHHHHHCT--EEEE--TTSSHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCCChhHHHHHHH
Confidence 5555566778888987432444443443
No 412
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.20 E-value=0.013 Score=53.26 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999875
No 413
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.18 E-value=0.082 Score=58.21 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|+|..|+|||||++-+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988653
No 414
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.17 E-value=0.17 Score=45.26 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=34.2
Q ss_pred HHHHHHhccCceEEEEeCC----CCcHHH--HHHHhcCCCCCCCCceEEEEeCchhhhhhcC
Q 043805 285 QNIRKRLQRIKVLIVLDDV----HDGFTQ--LENLVGGSDKFSPGSRIIITTRDKRVLDKCG 340 (555)
Q Consensus 285 ~~l~~~l~~~~~LlVlDdv----~~~~~~--~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~ 340 (555)
-.+.+++-++|-+|+-|+- +. .-+ +-.++..++. .|..||++|-+..+...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp-~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDP-DLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCCh-HHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhcc
Confidence 3456777788999999965 22 112 2223333333 6889999999987766653
No 415
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.16 E-value=0.014 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEecCcchhHHHHHHHHHhhhc
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
++|.|++|+|||||++.++.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 689999999999999999876543
No 416
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.15 E-value=0.014 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.3
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+|+|.|++|+||||+|+.++..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 417
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.13 E-value=0.022 Score=53.51 Aligned_cols=25 Identities=48% Similarity=0.603 Sum_probs=22.1
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhc
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
+|+|.|++|+||||||+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999987753
No 418
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.13 E-value=0.073 Score=55.25 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=26.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKC 246 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 246 (555)
..+.++|.|.+|+|||+|+.++++....+...++
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~ 175 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSS 175 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEE
Confidence 3567899999999999999999987764433333
No 419
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.11 E-value=0.028 Score=55.60 Aligned_cols=35 Identities=37% Similarity=0.493 Sum_probs=27.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+++.+.|-||+||||+|..++-...+.......++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 57899999999999999999987776654555544
No 420
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.017 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+-|.|+|.||+|||||+.+++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 458899999999999999999654
No 421
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.10 E-value=0.029 Score=48.50 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=26.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
++|.|+|+.|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999988754 44443433
No 422
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.089 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 423
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.09 E-value=0.044 Score=54.23 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.2
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+...+++|+|++|+|||||+..+.......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999999876554
No 424
>PRK13808 adenylate kinase; Provisional
Probab=95.08 E-value=0.047 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|+|.|+||+||||++..++..+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7789999999999999998764
No 425
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.07 E-value=0.045 Score=54.38 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=51.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc-ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM-GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
...++|+|+.|+|||||++.++..+.... ..+.+.+..+..... .... +.. .........-...+.+...++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~----l~~--~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH----LFY--SKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE----EEe--cCCCCCcCccCHHHHHHHHhc
Confidence 46899999999999999999887664332 333333221111100 0000 000 000001122345566777888
Q ss_pred cCceEEEEeCCCCcHHHHH
Q 043805 293 RIKVLIVLDDVHDGFTQLE 311 (555)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~ 311 (555)
..+-.|++|.+.. .+.+.
T Consensus 217 ~~pd~ii~gE~r~-~e~~~ 234 (308)
T TIGR02788 217 MRPDRIILGELRG-DEAFD 234 (308)
T ss_pred CCCCeEEEeccCC-HHHHH
Confidence 8999999999977 55544
No 426
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.06 E-value=0.067 Score=57.28 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCC-
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKI- 278 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~- 278 (555)
+..|.+.|..+-....++.|.|++|+|||+|+.+++.........++|+. .......+..-+..++-+..+.
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis-------~e~~~~~i~~~~~~~g~~~~~~~ 331 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA-------FEESRAQLIRNARSWGIDLEKME 331 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE-------ecCCHHHHHHHHHHcCCChHHHh
Q ss_pred ---------------CCCchhHHHHHHhcc-CceEEEEeCC
Q 043805 279 ---------------GTPTIPQNIRKRLQR-IKVLIVLDDV 303 (555)
Q Consensus 279 ---------------~~~~l~~~l~~~l~~-~~~LlVlDdv 303 (555)
..+.....+.+.+.. +.-++|+|.+
T Consensus 332 ~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 332 EKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred hcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCH
No 427
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.06 E-value=0.024 Score=56.99 Aligned_cols=47 Identities=28% Similarity=0.232 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 192 SFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
.++|+++....+...+..+ +.+.+.|++|+|||+||+.++..+...|
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 3899888888877666532 4688999999999999999999887444
No 428
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.06 E-value=0.015 Score=53.70 Aligned_cols=23 Identities=48% Similarity=0.751 Sum_probs=20.9
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 429
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.06 E-value=0.02 Score=52.66 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..++.|.|.+|+||||+|..++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 430
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.04 E-value=0.027 Score=47.22 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+|++.|.=|+||||+++.+++.+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457999999999999999999998763
No 431
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.04 E-value=0.071 Score=52.56 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=52.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCC--CceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDF--QGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
+.+.|+|+.|+||||++..++..+.... ...+-+.+..+...... ... .+. .......+.+.+...|+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~------~~v-~~~---~~~~~~~~~~~l~~aLR 202 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAP------NVV-QLR---TSDDAISMTRLLKATLR 202 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCC------CEE-EEE---ecCCCCCHHHHHHHHhc
Confidence 4678999999999999999998875532 22333332211110000 000 000 01122267778888999
Q ss_pred cCceEEEEeCCCCcHHHHHH
Q 043805 293 RIKVLIVLDDVHDGFTQLEN 312 (555)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~ 312 (555)
..+=.||+..+.. .+.+..
T Consensus 203 ~~pD~iivGEiR~-~ea~~~ 221 (299)
T TIGR02782 203 LRPDRIIVGEVRG-GEALDL 221 (299)
T ss_pred CCCCEEEEeccCC-HHHHHH
Confidence 9999999999977 555543
No 432
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.03 E-value=0.09 Score=54.44 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=50.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCcc-----CCCCCch----
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENL-----KIGTPTI---- 283 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~~~~l---- 283 (555)
..+.++|.|.+|+|||+|+..++.....+.+..+.+..++ ........++..++..-..... ..+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liG--ER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG--ERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec--cCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999999887765544333333222 2233344444444432111100 0011111
Q ss_pred ----hHHHHHHh---ccCceEEEEeCCCC
Q 043805 284 ----PQNIRKRL---QRIKVLIVLDDVHD 305 (555)
Q Consensus 284 ----~~~l~~~l---~~~~~LlVlDdv~~ 305 (555)
.-.+.+++ +++++||++|++..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 11133444 56899999999944
No 433
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.01 E-value=0.087 Score=53.50 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh--hcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI--SRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~ 249 (555)
.++.|.|.||+|||.||..++.++ ........++.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999988 55555666654
No 434
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.01 E-value=0.92 Score=47.07 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=39.9
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 189 DLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
....++|+...++++.+.+..-....-.|.|+|.+|+||-.+|+.+-+.-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S 188 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS 188 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC
Confidence 45689999999999999886433334568899999999999998876543
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.00 E-value=0.11 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.+.++|+|+.|.|||||.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 436
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.026 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|+||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998876
No 437
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.98 E-value=0.065 Score=51.18 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=29.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
...++.|.|++|+|||+++.+++...... -..++|+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 45689999999999999999998876554 45566654
No 438
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.97 E-value=0.02 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+.+++.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998754
No 439
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.97 E-value=0.033 Score=57.10 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
...++|.||+|+|||||++.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45799999999999999998764
No 440
>PLN02459 probable adenylate kinase
Probab=94.96 E-value=0.079 Score=50.60 Aligned_cols=91 Identities=25% Similarity=0.223 Sum_probs=48.6
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEe---chhh-ccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVAD---VREE-SNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
.+.|.|+||+||||++..++.... ..++.. ++.. .....+. ..+........-++.+.+...+.+.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~-----~~~is~gdllR~ei~~~t~lg----~~i~~~~~~G~lVPdeiv~~ll~~~l 101 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG-----VPHIATGDLVREEIKSSGPLG----AQLKEIVNQGKLVPDEIIFSLLSKRL 101 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcEEeCcHHHHHHHhccchhH----HHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 367789999999999999987653 122221 1110 1111111 12222222222223344455555655
Q ss_pred cc----CceEEEEeCCCCcHHHHHHHhc
Q 043805 292 QR----IKVLIVLDDVHDGFTQLENLVG 315 (555)
Q Consensus 292 ~~----~~~LlVlDdv~~~~~~~~~l~~ 315 (555)
.. ...-+|||.+-....+...|-.
T Consensus 102 ~~~~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 102 EAGEEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred hcccccCCceEEEeCCCCCHHHHHHHHh
Confidence 43 3457999999654777666643
No 441
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.95 E-value=0.047 Score=54.27 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=28.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
++.++++.|++|+||||++..++..+......+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 468999999999999999999998876553333333
No 442
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.94 E-value=0.09 Score=56.79 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=63.9
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccC
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLK 277 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 277 (555)
..++.+.+++. ...++|.|+|+.|+||||+...+...+... ...++.. .+.-+ ..+.. + .+..- ..
T Consensus 303 ~~~~~l~~~~~---~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~ti--EdpvE-~~~~~----~-~q~~v--~~ 368 (564)
T TIGR02538 303 DQKALFLEAIH---KPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTA--EDPVE-INLPG----I-NQVNV--NP 368 (564)
T ss_pred HHHHHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEe--cCCce-ecCCC----c-eEEEe--cc
Confidence 44556665553 234689999999999999998877766332 2222211 10000 00000 0 00000 00
Q ss_pred CCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEe
Q 043805 278 IGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 278 ~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTs 330 (555)
.........++..|+..|=+|++.++.+ .+.....+.... .| +.++||
T Consensus 369 ~~g~~~~~~l~~~LR~dPDvI~vGEiRd-~eta~~a~~aa~---tG-Hlv~tT 416 (564)
T TIGR02538 369 KIGLTFAAALRSFLRQDPDIIMVGEIRD-LETAEIAIKAAQ---TG-HLVLST 416 (564)
T ss_pred ccCCCHHHHHHHHhccCCCEEEeCCCCC-HHHHHHHHHHHH---cC-CcEEEE
Confidence 0123566778899999999999999987 666554444321 33 455555
No 443
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.92 E-value=0.077 Score=52.85 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=32.9
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC------CCceEEEE
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD------FQGKCFVA 249 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 249 (555)
.+..+|..+-....++.|+|++|+|||+|+.+++...... -..++|+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3444554332346788999999999999999998765321 12567766
No 444
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.92 E-value=0.016 Score=51.63 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=19.8
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
++|.|++|+||||+|..+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 445
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.25 Score=50.40 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=23.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..+-+.+.||+|.|||.|++.++-+...
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~a 212 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGA 212 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcc
Confidence 3556789999999999999999977543
No 446
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.92 E-value=3.4 Score=39.51 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=64.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC-------------------CCceEEEEechhhccccChHHHHHHHHHHHhC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD-------------------FQGKCFVADVREESNKMGVIHVRDEVISRVLG 273 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------------f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 273 (555)
.+....++|+.|+||..+|.+++..+-.. ++...|+....
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~--------------------- 64 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK--------------------- 64 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc---------------------
Confidence 35678899999999999999999765221 22222221000
Q ss_pred CccCCCCCchhHHHHHH----hc-cCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhhc-CCCeEE
Q 043805 274 ENLKIGTPTIPQNIRKR----LQ-RIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDKC-GVDNIF 345 (555)
Q Consensus 274 ~~~~~~~~~l~~~l~~~----l~-~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~-~~~~~~ 345 (555)
..+..+++.+..... .. ++.-++|+|+++. .......|+..+....++..+|++|.+. .+++.. .....+
T Consensus 65 --~~I~id~ir~l~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~ 142 (261)
T PRK05818 65 --NPIKKEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142 (261)
T ss_pred --ccCCHHHHHHHHHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeee
Confidence 011122222211111 11 3356789999964 2456777887777666777777777654 333332 223455
Q ss_pred EeecC
Q 043805 346 EVKGL 350 (555)
Q Consensus 346 ~l~~L 350 (555)
.+.++
T Consensus 143 ~~~~~ 147 (261)
T PRK05818 143 VVLSK 147 (261)
T ss_pred ecCCh
Confidence 66555
No 447
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.91 E-value=0.028 Score=55.50 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=43.5
Q ss_pred CCCcccchhhHHHHHhhhccc----CCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 190 LDSFVGLNSRIEEMKSLMCLE----SHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+.|+|.++.++++.+.+... ....+++.+.||.|.|||||+..+.+-+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 357999999999999988632 2347899999999999999999998877654
No 448
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.67 Score=50.20 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=80.5
Q ss_pred cccchhhHHHHHhhhcccC-------CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHH
Q 043805 193 FVGLNSRIEEMKSLMCLES-------HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRD 265 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 265 (555)
-.+++..+..+.+.+.... ....++.++|.+|+|||++++.++..+.-++ .=+.+..-.+...+
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~---~evdc~el~~~s~~------ 473 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHL---LEVDCYELVAESAS------ 473 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCce---EeccHHHHhhcccc------
Confidence 3566777777777775321 2356899999999999999999998876552 11111000111110
Q ss_pred HHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC------------cHHHHHHHhc-C-CCCCCCCceEEEEeC
Q 043805 266 EVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD------------GFTQLENLVG-G-SDKFSPGSRIIITTR 331 (555)
Q Consensus 266 ~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~------------~~~~~~~l~~-~-~~~~~~~~~iliTsR 331 (555)
.....+...+.+.-.-.+.+|.|-|++- ....++.++. . .....++..++.|+.
T Consensus 474 ------------~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~ 541 (953)
T KOG0736|consen 474 ------------HTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTS 541 (953)
T ss_pred ------------hhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecc
Confidence 0111122222233334566777666632 1112333333 1 122234545555554
Q ss_pred ch-hhhhhcC--CCeEEEeecCChHHHHHHHHHHh
Q 043805 332 DK-RVLDKCG--VDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 332 ~~-~~~~~~~--~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
+. .+..... ..+.++++.++.++-.++|+-..
T Consensus 542 s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~ 576 (953)
T KOG0736|consen 542 SIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYL 576 (953)
T ss_pred ccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 32 2222211 34578899999999999998776
No 449
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.90 E-value=0.044 Score=48.99 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=25.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..++++|+|+.|+|||||+..+...+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 35689999999999999999999887653
No 450
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.90 E-value=0.043 Score=54.24 Aligned_cols=36 Identities=39% Similarity=0.456 Sum_probs=28.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.+++.++|-||+||||+|..++-...........+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999999887776654444443
No 451
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.89 E-value=1.4 Score=45.89 Aligned_cols=255 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcceEEEEeccCCcc--chhhHHHHHHHHHhHHhcCCEEEEEEeeeCCccccccCCChhhhHHhhhhhChh
Q 043805 62 SPTILKAIETSDISIIIFSKDYAA--SKWCLNELVKILDCKKINGQIVIPVFYQVDPSNVRKQSGSFGEAFDEYEKNFPN 139 (555)
Q Consensus 62 ~~~i~~~i~~s~~~i~v~S~~~~~--s~~~~~El~~~~~~~~~~~~~v~pv~~~v~p~~v~~~~~~~~~~~~~~~~~~~~ 139 (555)
..++..-|.+-+..++|++-++-+ ..||.. ++++.-..+....|.|.+....-.+....
T Consensus 257 ~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~-------------------Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~ 317 (614)
T KOG0927|consen 257 IVWLEEYLAKYDRIILVIVSHSQDFLNGVCTN-------------------IIHLDNKKLIYYEGNYDQYVKTRSELEEN 317 (614)
T ss_pred HHHHHHHHHhccCceEEEEecchhhhhhHhhh-------------------hheecccceeeecCCHHHHhhHHHHHhHH
Q ss_pred hHHHHHHHHHHhhhh------cCCcccccchhhHHHhhhhhhhhhcccccCCCCCCCCCcccchhhHHH-----------
Q 043805 140 MVQKWRDALTQASNI------SGYHESRTFRNEAELVENIVEDISEKLEDMSNSTDLDSFVGLNSRIEE----------- 202 (555)
Q Consensus 140 ~~~~~~~~l~~~~~~------~g~~~~~~~~~e~~~~~~i~~~v~~~l~~~~~~~~~~~fvGR~~el~~----------- 202 (555)
.+..|.+.-++++.. .|. ....+...+...++........-.. ..+.....+.=|-.+...
T Consensus 318 q~K~~~kqqk~i~~~K~~ia~~g~-g~a~~~rka~s~~K~~~km~~~gL~-ek~~~~k~l~~~f~~vg~~p~pvi~~~nv 395 (614)
T KOG0927|consen 318 QMKAYEKQQKQIAHMKDLIARFGH-GSAKLGRKAQSKEKTLDKMEADGLT-EKVVGEKVLSFRFPEVGKIPPPVIMVQNV 395 (614)
T ss_pred HHHHHHHHHhHHHHhhHHHHhhcc-cchhhhHHHhhhhhhHHHHhhcccc-ccccCCceEEEEcccccCCCCCeEEEecc
Q ss_pred ---------HHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEech---------------------
Q 043805 203 ---------MKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVR--------------------- 252 (555)
Q Consensus 203 ---------l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--------------------- 252 (555)
+-..|.-+-+-...|+++||.|+|||||.+-.+-.+...-..+.--....
T Consensus 396 ~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 396 SFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred ccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Q ss_pred --hhccccChHHHHHHHHHHHhCCccCC--------CCCchhHHHHHHhccCceEEEEeCCCC--cHHHHHHHhcCCCCC
Q 043805 253 --EESNKMGVIHVRDEVISRVLGENLKI--------GTPTIPQNIRKRLQRIKVLIVLDDVHD--GFTQLENLVGGSDKF 320 (555)
Q Consensus 253 --~~~~~~~~~~~~~~ll~~~~~~~~~~--------~~~~l~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~l~~~~~~~ 320 (555)
.......-....+.++...+...... +-..-.-.+...+=..|-|||||.-.+ +.+.++.+...++.+
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~ 555 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF 555 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Q ss_pred CCCceEEEEeCchhhhhhc
Q 043805 321 SPGSRIIITTRDKRVLDKC 339 (555)
Q Consensus 321 ~~~~~iliTsR~~~~~~~~ 339 (555)
..| +|++|.+..+....
T Consensus 556 ~Gg--vv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 556 PGG--VVLVSHDFRLISQV 572 (614)
T ss_pred CCc--eeeeechhhHHHHH
No 452
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.07 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
..+-+|-||.|+|||||+..++-
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999998864
No 453
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.88 E-value=0.032 Score=56.66 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHhhhcc---------c---CCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 191 DSFVGLNSRIEEMKSLMCL---------E---SHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~---------~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..++|.+...+.+..++.. . .-.++.+.+.|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 3578888887777766532 0 0114678999999999999999999876433
No 454
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.88 E-value=0.18 Score=54.72 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.++..|+|.+|.||||++..+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999998876543
No 455
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.022 Score=51.81 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+|+|.||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999998876
No 456
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.87 E-value=0.061 Score=49.46 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..|+|.|+.|+||||+++.+++.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887653
No 457
>PRK13768 GTPase; Provisional
Probab=94.87 E-value=0.036 Score=53.34 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=26.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
.+++|.|++|+||||++..++..+......++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 5788999999999999999998776554444444
No 458
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.87 E-value=0.022 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEecCcchhHHHHHHHHHhh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 459
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.86 E-value=0.1 Score=54.04 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=27.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh--cCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS--RDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 249 (555)
.+++++.|++|+||||++..++..+. .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999987765 3333444444
No 460
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.81 E-value=0.053 Score=58.93 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=42.7
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
.+.++|.++.++.+...+... +.+.++|++|+|||++++.+++.+... |...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 467899999998888877532 356699999999999999999887654 23344444
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.80 E-value=0.043 Score=58.22 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=33.7
Q ss_pred HHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 203 MKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 203 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
|.+.|..+=...+.+.|.|++|+|||+||.+|+..-..+ -..++|+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 444454333456899999999999999999998764333 45677765
No 462
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.78 E-value=0.098 Score=55.58 Aligned_cols=62 Identities=23% Similarity=0.446 Sum_probs=39.0
Q ss_pred hHHHHHHhccCceEEEEeCCCC--cHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhcCCCeEEEee
Q 043805 284 PQNIRKRLQRIKVLIVLDDVHD--GFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKCGVDNIFEVK 348 (555)
Q Consensus 284 ~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~ 348 (555)
.-.|.+.|-.+|=+|+||.=.+ +.+.+..|-..+... +| .+||.|-++..+..+. ..+++++
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~-t~I~~ld 224 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVA-THILELD 224 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHh-hheEEec
Confidence 3446677778899999998743 345555544443322 45 7899999988776652 2344443
No 463
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.78 E-value=0.04 Score=49.63 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.1
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
++.++|++|+||||++..++..+......+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999988766533344433
No 464
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.77 E-value=0.02 Score=55.58 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=22.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.+-+.++|++|+|||++++.+...+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc
Confidence 356789999999999999998876543
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.76 E-value=0.024 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.7
Q ss_pred EEEEecCcchhHHHHHHHHHh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~ 237 (555)
|+|+|.+|+|||||+..++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 466
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.74 E-value=0.22 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...+++|.||.|+|||||.+.++.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999998764
No 467
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.73 E-value=0.13 Score=53.14 Aligned_cols=91 Identities=19% Similarity=0.314 Sum_probs=50.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCcc-----CCCCCchh---
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENL-----KIGTPTIP--- 284 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~~~~l~--- 284 (555)
..+.++|.|.+|+|||+|+.+++.....+...++.+..++ ........++..+...-..... ..+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIG--ER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG--ERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEec--CCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999999987755444344333332 2223344444444322111100 00111111
Q ss_pred -----HHHHHHh---ccCceEEEEeCCCC
Q 043805 285 -----QNIRKRL---QRIKVLIVLDDVHD 305 (555)
Q Consensus 285 -----~~l~~~l---~~~~~LlVlDdv~~ 305 (555)
-.+.+++ +++++||++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1133444 35799999999944
No 468
>PRK13949 shikimate kinase; Provisional
Probab=94.73 E-value=0.026 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.7
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|+|.|++|+||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 469
>PRK14530 adenylate kinase; Provisional
Probab=94.73 E-value=0.024 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+.|+|.|++|+||||+++.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998775
No 470
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.72 E-value=0.032 Score=53.01 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=22.1
Q ss_pred EEecCcchhHHHHHHHHHhhhcCCCceEEEEech
Q 043805 219 IWGMGGVGKTTIASVVFHQISRDFQGKCFVADVR 252 (555)
Q Consensus 219 I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 252 (555)
|.||+|+||||++..+.+.+....... .+.++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~-~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDV-YIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-E-EEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCc-eEEEcc
Confidence 689999999999999998776654333 333343
No 471
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.67 E-value=0.17 Score=56.54 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+++.|+|.+|+||||++..+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 588899999999999999998766554
No 472
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.67 E-value=0.038 Score=48.62 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=28.7
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|...+. + +++++.|++|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 55777777774 2 68999999999999999998754
No 473
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.034 Score=48.45 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=22.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|+|.+|+||||+...+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999887766
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.66 E-value=0.026 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|+|++|+|||||+..++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.66 E-value=0.022 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998754
No 476
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.2 Score=49.78 Aligned_cols=51 Identities=25% Similarity=0.280 Sum_probs=35.4
Q ss_pred CCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 190 LDSFVGLNSRIEEMKSLMCL----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
=+...|-++..+-|.+..-. -...=+-|+++||+|.|||-||++++.....
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 35567776666666654321 1122456889999999999999999987653
No 477
>PRK13948 shikimate kinase; Provisional
Probab=94.64 E-value=0.028 Score=50.93 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++.|.|.|+.|+||||+++.+++.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 478
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.62 E-value=0.038 Score=48.27 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
-.++|+||+|+|||||.+.++.-+...
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 478999999999999999999876554
No 479
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.62 E-value=0.17 Score=51.05 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=25.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh--cCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS--RDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 249 (555)
.+++.++||.|+||||-...++.+.. ..-..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 78999999999999977666666544 3333444443
No 480
>PLN02200 adenylate kinase family protein
Probab=94.61 E-value=0.03 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+.+++|.|++|+||||+|..++...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998764
No 481
>PRK10646 ADP-binding protein; Provisional
Probab=94.61 E-value=0.045 Score=47.70 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=31.0
Q ss_pred hhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 197 NSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 197 ~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+++..++.+.|...-....+|.+.|.=|.||||+++.+++.+.
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455555555542223345899999999999999999998764
No 482
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.61 E-value=0.04 Score=51.82 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
.+..+.+.||+|+||||.++.+...+.........+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYvi 53 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVI 53 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEE
Confidence 466888999999999999999988777665443333
No 483
>PRK13946 shikimate kinase; Provisional
Probab=94.61 E-value=0.027 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+.|++.|++|+||||+++.+++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998874
No 484
>PRK13975 thymidylate kinase; Provisional
Probab=94.60 E-value=0.03 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=23.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..|+|.|+.|+||||+++.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999988764
No 485
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.59 E-value=0.12 Score=54.67 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.++|+|+|..|+||||-..+|.+.
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~e 394 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYE 394 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHh
Confidence 469999999999999988887764
No 486
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.59 E-value=0.85 Score=44.13 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=27.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...+++.|++|+||||++..++..+..+-..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999999887654433444443
No 487
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.58 E-value=0.045 Score=50.97 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=26.1
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..+.++++++|..|+|||||..++.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 346899999999999999999999987654
No 488
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.57 E-value=0.029 Score=46.84 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEecCcchhHHHHHHHHHh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~ 237 (555)
|+|.|.+|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 489
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.56 E-value=0.033 Score=51.86 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=23.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+.++|.|.+|+|||+|+.++++.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d 42 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD 42 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEEcCcccccchhhHHHHhccccc
Confidence 568899999999999999999887543
No 490
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.56 E-value=0.033 Score=45.33 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=20.0
Q ss_pred eEEEEEEecCcchhHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVF 235 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~ 235 (555)
...++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 491
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.55 E-value=0.18 Score=55.16 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
....++|+|+.|+|||||++-+....
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999987755
No 492
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.55 E-value=0.078 Score=48.77 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.1
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+|+|.|+.|+||||+++.++..+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999887643
No 493
>PLN02165 adenylate isopentenyltransferase
Probab=94.54 E-value=0.037 Score=54.64 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
....+++|.|+.|+|||+||..++..+.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 3456899999999999999999998764
No 494
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.51 E-value=0.2 Score=54.24 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.++..|+|.+|.||||++..+...+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999998876543
No 495
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.49 E-value=0.21 Score=45.97 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
....++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999988654
No 496
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.47 E-value=0.14 Score=43.46 Aligned_cols=34 Identities=21% Similarity=0.033 Sum_probs=25.0
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhc--CCCceEEEE
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISR--DFQGKCFVA 249 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~ 249 (555)
.+.|.|++|+|||+.+..++..... .....+++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 3679999999999999998876654 234445543
No 497
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.47 E-value=0.045 Score=53.06 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=28.8
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+++.|.|.+|+|||||+.+++..+..+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 4799999999999999999999988876 455554
No 498
>PRK06761 hypothetical protein; Provisional
Probab=94.46 E-value=0.044 Score=53.15 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=24.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+++.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987654
No 499
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.43 E-value=0.36 Score=41.77 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=28.6
Q ss_pred HHHHHHHhhcceEEEEeccCCccchhhHHHHHHHHHhHHhcCCEEEEEE
Q 043805 63 PTILKAIETSDISIIIFSKDYAASKWCLNELVKILDCKKINGQIVIPVF 111 (555)
Q Consensus 63 ~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~~~~~~~~~v~pv~ 111 (555)
.++.++|+.+++++.|++...-.+.+. .++...+.... .+..++.|+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivl 49 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLL 49 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEE
Confidence 467889999999999999765444442 25555554321 233444444
No 500
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.43 E-value=0.035 Score=55.36 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=37.2
Q ss_pred CCCCCCcccchhhHHHHHh-hhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 187 STDLDSFVGLNSRIEEMKS-LMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~-~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
|.+...++|.+...+.|.- .+.. +..-+.+.|++|+|||++|+.++.-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~---~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP---GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc---CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3445678999998887764 4322 22358899999999999999998765
Done!