Query 043805
Match_columns 555
No_of_seqs 445 out of 3252
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1E-43 3.6E-48 317.7 11.9 182 1-183 19-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 5.2E-42 1.8E-46 302.4 10.6 168 13-183 4-172 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 5E-38 1.7E-42 336.4 20.5 299 194-505 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-36 1E-40 354.7 25.3 307 185-504 118-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 3.8E-35 1.3E-39 318.4 29.4 301 185-500 118-448 (591)
6 1vt4_I APAF-1 related killer D 100.0 1.7E-34 5.7E-39 314.1 17.9 278 191-496 128-435 (1221)
7 3h16_A TIR protein; bacteria T 100.0 6.3E-30 2.2E-34 225.3 6.4 120 13-133 16-135 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 3.1E-26 1.1E-30 198.4 1.9 107 11-119 4-112 (146)
9 2js7_A Myeloid differentiation 99.9 2.8E-23 9.5E-28 182.9 3.8 103 12-116 11-117 (160)
10 2qen_A Walker-type ATPase; unk 99.9 2E-20 6.8E-25 188.8 22.5 290 185-498 6-349 (350)
11 2j67_A TOLL like receptor 10; 99.9 7.7E-23 2.6E-27 182.9 3.7 102 12-115 30-135 (178)
12 1fyx_A TOLL-like receptor 2; b 99.9 3.4E-23 1.2E-27 180.6 1.4 99 14-114 2-104 (149)
13 1t3g_A X-linked interleukin-1 99.8 1.9E-21 6.4E-26 171.1 7.9 101 16-116 1-114 (159)
14 2fna_A Conserved hypothetical 99.8 2.4E-19 8.2E-24 181.3 23.5 283 185-497 7-356 (357)
15 1w5s_A Origin recognition comp 99.7 4.4E-17 1.5E-21 168.2 20.3 285 188-482 19-372 (412)
16 2qby_B CDC6 homolog 3, cell di 99.7 2.4E-14 8.1E-19 146.2 25.9 278 190-482 19-340 (384)
17 2qby_A CDC6 homolog 1, cell di 99.6 1E-14 3.4E-19 148.9 19.8 283 188-481 17-348 (386)
18 1fnn_A CDC6P, cell division co 99.6 6.1E-14 2.1E-18 143.4 24.4 305 189-504 15-387 (389)
19 2v1u_A Cell division control p 99.6 1.1E-13 3.9E-18 141.1 21.2 282 189-481 17-351 (387)
20 3j0a_A TOLL-like receptor 5; m 99.6 1.2E-15 4.2E-20 171.7 7.1 103 12-116 665-774 (844)
21 1njg_A DNA polymerase III subu 99.4 2.6E-12 8.7E-17 121.9 16.8 189 187-398 19-231 (250)
22 2chg_A Replication factor C sm 99.3 2.1E-11 7.2E-16 113.9 16.2 189 187-396 13-205 (226)
23 1sxj_B Activator 1 37 kDa subu 99.2 5E-11 1.7E-15 118.3 13.9 187 187-395 17-210 (323)
24 1hqc_A RUVB; extended AAA-ATPa 99.2 1.8E-09 6.2E-14 107.1 21.0 265 187-495 8-310 (324)
25 1iqp_A RFCS; clamp loader, ext 99.2 3.6E-10 1.2E-14 112.3 15.6 190 187-398 21-215 (327)
26 2chq_A Replication factor C sm 99.1 2.3E-09 8E-14 105.9 18.0 182 187-396 13-205 (319)
27 1jr3_A DNA polymerase III subu 99.0 3.9E-09 1.3E-13 106.9 16.5 196 188-396 13-222 (373)
28 3pfi_A Holliday junction ATP-d 99.0 1.1E-08 3.7E-13 102.2 18.8 258 187-488 25-319 (338)
29 1jbk_A CLPB protein; beta barr 98.9 9.7E-09 3.3E-13 93.1 13.1 51 188-240 19-69 (195)
30 3bos_A Putative DNA replicatio 98.9 8.6E-09 3E-13 97.3 10.6 177 188-396 25-218 (242)
31 1sxj_D Activator 1 41 kDa subu 98.8 1.2E-07 4.1E-12 95.1 18.5 198 187-395 33-235 (353)
32 3uk6_A RUVB-like 2; hexameric 98.8 5.5E-08 1.9E-12 98.2 15.8 203 190-396 43-304 (368)
33 3te6_A Regulatory protein SIR3 98.8 8.4E-08 2.9E-12 93.6 15.2 166 192-364 21-212 (318)
34 1sxj_A Activator 1 95 kDa subu 98.8 8.8E-08 3E-12 101.1 15.9 189 187-393 35-250 (516)
35 3h4m_A Proteasome-activating n 98.7 1.3E-07 4.4E-12 91.9 14.3 186 186-395 12-231 (285)
36 3d8b_A Fidgetin-like protein 1 98.7 2.5E-07 8.7E-12 92.8 16.9 188 186-397 79-297 (357)
37 1sxj_E Activator 1 40 kDa subu 98.7 1.2E-07 3.9E-12 95.3 13.8 201 187-396 10-238 (354)
38 2z4s_A Chromosomal replication 98.7 9E-08 3.1E-12 98.7 12.5 186 189-395 103-306 (440)
39 1d2n_A N-ethylmaleimide-sensit 98.7 7.7E-07 2.6E-11 85.7 18.0 170 191-387 33-229 (272)
40 3eie_A Vacuolar protein sortin 98.7 3.5E-07 1.2E-11 90.4 15.8 188 186-396 13-229 (322)
41 2qz4_A Paraplegin; AAA+, SPG7, 98.6 1.1E-06 3.9E-11 83.8 18.2 185 189-396 4-223 (262)
42 1l8q_A Chromosomal replication 98.6 4.4E-07 1.5E-11 89.8 15.8 185 186-393 6-206 (324)
43 2qp9_X Vacuolar protein sortin 98.6 8.2E-07 2.8E-11 88.9 17.4 188 186-396 46-262 (355)
44 3pvs_A Replication-associated 98.6 3E-07 1E-11 94.7 14.0 181 187-395 22-215 (447)
45 2p65_A Hypothetical protein PF 98.6 1.8E-07 6E-12 84.3 10.9 50 189-240 20-69 (187)
46 2zan_A Vacuolar protein sortin 98.6 1.2E-06 4.2E-11 90.4 18.4 190 185-396 128-346 (444)
47 1in4_A RUVB, holliday junction 98.6 3.9E-06 1.3E-10 83.3 20.0 257 188-488 22-316 (334)
48 3syl_A Protein CBBX; photosynt 98.6 1.2E-07 4.2E-12 93.1 8.9 149 192-364 32-218 (309)
49 3b9p_A CG5977-PA, isoform A; A 98.5 3.3E-06 1.1E-10 82.3 18.6 184 186-396 16-234 (297)
50 3u61_B DNA polymerase accessor 98.5 5E-07 1.7E-11 89.4 12.8 182 187-393 22-214 (324)
51 3vfd_A Spastin; ATPase, microt 98.5 1.6E-06 5.5E-11 88.1 16.8 189 185-396 109-327 (389)
52 1xwi_A SKD1 protein; VPS4B, AA 98.5 1.5E-06 5.2E-11 85.7 16.0 186 188-396 9-224 (322)
53 1a5t_A Delta prime, HOLB; zinc 98.5 1.6E-06 5.6E-11 86.0 16.0 174 197-395 8-205 (334)
54 1sxj_C Activator 1 40 kDa subu 98.5 1.4E-06 4.9E-11 86.7 14.9 186 188-394 22-211 (340)
55 3pxg_A Negative regulator of g 98.4 1.4E-06 4.7E-11 90.7 13.0 150 187-363 176-338 (468)
56 3cf0_A Transitional endoplasmi 98.4 2.8E-06 9.5E-11 83.0 14.3 179 188-390 12-223 (301)
57 1qvr_A CLPB protein; coiled co 98.4 1.8E-06 6.2E-11 96.7 13.3 158 187-363 166-345 (854)
58 3n70_A Transport activator; si 98.3 7.8E-07 2.7E-11 76.8 7.3 49 192-240 2-50 (145)
59 3hu3_A Transitional endoplasmi 98.3 2.4E-06 8.2E-11 88.9 11.9 181 190-394 203-414 (489)
60 4b4t_J 26S protease regulatory 98.3 4.2E-06 1.4E-10 83.7 11.9 177 188-388 145-354 (405)
61 1ofh_A ATP-dependent HSL prote 98.2 3.9E-06 1.3E-10 82.2 10.8 48 192-239 16-75 (310)
62 2gno_A DNA polymerase III, gam 98.2 1.1E-05 3.9E-10 78.5 12.8 147 195-363 1-152 (305)
63 1r6b_X CLPA protein; AAA+, N-t 98.2 1E-05 3.4E-10 89.7 13.4 153 188-363 183-362 (758)
64 1ojl_A Transcriptional regulat 98.2 1.2E-05 4.2E-10 78.4 12.3 49 191-239 2-50 (304)
65 4fcw_A Chaperone protein CLPB; 98.2 1.5E-05 5.2E-10 78.0 12.9 57 192-248 18-81 (311)
66 1lv7_A FTSH; alpha/beta domain 98.1 6.3E-06 2.2E-10 78.5 9.6 184 187-394 8-224 (257)
67 4b4t_H 26S protease regulatory 98.1 2.4E-05 8.1E-10 79.4 13.9 174 190-388 208-415 (467)
68 2bjv_A PSP operon transcriptio 98.1 7.9E-06 2.7E-10 78.2 10.1 50 191-240 6-55 (265)
69 3pxi_A Negative regulator of g 98.1 1.1E-05 3.6E-10 89.4 12.4 150 187-363 176-338 (758)
70 2r62_A Cell division protease 98.1 2.3E-06 7.9E-11 82.1 6.1 156 187-363 7-196 (268)
71 4b4t_M 26S protease regulatory 98.1 7E-06 2.4E-10 83.4 9.7 176 186-387 176-386 (434)
72 4b4t_L 26S protease subunit RP 98.1 1.8E-05 6E-10 80.5 12.7 176 188-388 178-387 (437)
73 2c9o_A RUVB-like 1; hexameric 98.1 1.9E-05 6.4E-10 81.9 13.2 97 296-394 297-409 (456)
74 4b4t_K 26S protease regulatory 98.1 1.5E-05 5.3E-10 80.8 11.2 53 189-241 170-233 (428)
75 3ec2_A DNA replication protein 98.0 1E-05 3.5E-10 72.4 8.3 50 190-239 9-63 (180)
76 1eiw_A Hypothetical protein MT 98.0 6.5E-06 2.2E-10 66.3 5.4 73 15-111 2-74 (111)
77 4b4t_I 26S protease regulatory 97.9 4.6E-05 1.6E-09 76.5 11.1 174 188-387 179-387 (437)
78 2ce7_A Cell division protein F 97.9 0.00024 8.1E-09 73.3 16.8 176 189-388 14-221 (476)
79 3co5_A Putative two-component 97.8 4.8E-06 1.7E-10 71.5 1.8 48 192-239 5-52 (143)
80 3t15_A Ribulose bisphosphate c 97.8 8.4E-05 2.9E-09 72.1 10.5 28 213-240 35-62 (293)
81 3pxi_A Negative regulator of g 97.8 6.6E-05 2.3E-09 83.0 10.9 149 191-363 491-675 (758)
82 3cf2_A TER ATPase, transitiona 97.8 4.2E-05 1.4E-09 83.5 9.0 174 191-388 204-407 (806)
83 2w58_A DNAI, primosome compone 97.8 6.2E-05 2.1E-09 68.6 8.5 61 189-249 23-89 (202)
84 2kjq_A DNAA-related protein; s 97.8 4.2E-05 1.4E-09 66.1 6.7 36 214-249 36-71 (149)
85 1ixz_A ATP-dependent metallopr 97.7 0.00018 6.3E-09 68.1 11.4 53 187-239 12-74 (254)
86 1iy2_A ATP-dependent metallopr 97.6 0.00036 1.2E-08 67.0 11.9 179 186-388 35-245 (278)
87 1um8_A ATP-dependent CLP prote 97.6 0.0003 1E-08 70.9 11.2 26 214-239 72-97 (376)
88 2dhr_A FTSH; AAA+ protein, hex 97.5 0.0014 4.6E-08 68.1 14.5 178 187-388 27-236 (499)
89 2qgz_A Helicase loader, putati 97.4 0.00053 1.8E-08 66.9 9.7 60 190-249 123-188 (308)
90 1ypw_A Transitional endoplasmi 97.4 0.00052 1.8E-08 76.0 10.6 153 189-363 202-385 (806)
91 3m6a_A ATP-dependent protease 97.3 0.00069 2.4E-08 71.5 9.8 155 193-363 83-266 (543)
92 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00036 1.2E-08 77.2 7.3 48 191-238 458-512 (758)
93 1jr3_D DNA polymerase III, del 97.2 0.0052 1.8E-07 60.8 14.5 157 213-394 17-184 (343)
94 2x8a_A Nuclear valosin-contain 97.2 0.0058 2E-07 58.3 13.9 126 217-363 47-191 (274)
95 1qvr_A CLPB protein; coiled co 97.1 0.0011 3.8E-08 74.1 9.6 49 192-240 559-614 (854)
96 3hr8_A Protein RECA; alpha and 96.9 0.0017 5.8E-08 64.2 8.1 49 201-249 47-96 (356)
97 3io5_A Recombination and repai 96.8 0.0022 7.5E-08 61.7 7.5 34 216-249 30-65 (333)
98 3cf2_A TER ATPase, transitiona 96.8 0.0014 4.9E-08 71.6 7.0 153 190-363 476-661 (806)
99 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00092 3.1E-08 64.6 4.6 24 214-237 123-146 (331)
100 1g5t_A COB(I)alamin adenosyltr 96.7 0.0029 9.9E-08 56.5 6.9 35 215-249 29-63 (196)
101 2cvh_A DNA repair and recombin 96.7 0.0039 1.3E-07 57.1 7.9 33 214-249 20-52 (220)
102 1ye8_A Protein THEP1, hypothet 96.6 0.031 1.1E-06 49.4 13.1 24 216-239 2-25 (178)
103 1xp8_A RECA protein, recombina 96.6 0.0034 1.2E-07 62.4 7.5 36 214-249 74-109 (366)
104 3tlx_A Adenylate kinase 2; str 96.5 0.0059 2E-07 57.2 8.2 42 197-238 12-53 (243)
105 2eyu_A Twitching motility prot 96.5 0.0027 9.2E-08 60.1 5.8 110 213-333 24-133 (261)
106 3jvv_A Twitching mobility prot 96.5 0.0034 1.1E-07 62.3 6.6 109 214-334 123-232 (356)
107 3hyn_A Putative signal transdu 96.5 0.0096 3.3E-07 51.4 8.4 84 25-113 27-118 (189)
108 1rz3_A Hypothetical protein rb 96.5 0.0041 1.4E-07 56.3 6.4 45 196-240 3-48 (201)
109 1v5w_A DMC1, meiotic recombina 96.4 0.014 4.8E-07 57.7 10.7 38 212-249 120-163 (343)
110 2b8t_A Thymidine kinase; deoxy 96.4 0.0017 5.9E-08 59.7 3.7 111 213-333 11-126 (223)
111 2zr9_A Protein RECA, recombina 96.4 0.0089 3.1E-07 59.1 9.0 37 213-249 60-96 (349)
112 1n0w_A DNA repair protein RAD5 96.4 0.0059 2E-07 56.8 7.4 36 214-249 24-65 (243)
113 1u94_A RECA protein, recombina 96.4 0.005 1.7E-07 61.0 6.8 36 214-249 63-98 (356)
114 3sr0_A Adenylate kinase; phosp 96.3 0.003 1E-07 57.5 4.8 88 216-313 2-93 (206)
115 2r44_A Uncharacterized protein 96.3 0.0029 9.8E-08 62.3 4.9 46 191-240 27-72 (331)
116 3bh0_A DNAB-like replicative h 96.3 0.0098 3.3E-07 58.0 8.6 37 213-249 67-103 (315)
117 3c8u_A Fructokinase; YP_612366 96.3 0.0038 1.3E-07 56.9 4.9 42 199-240 7-48 (208)
118 1qhx_A CPT, protein (chloramph 96.2 0.002 7E-08 56.9 3.0 25 215-239 4-28 (178)
119 1g8p_A Magnesium-chelatase 38 96.2 0.0027 9.3E-08 62.9 4.0 52 186-239 19-70 (350)
120 3umf_A Adenylate kinase; rossm 96.2 0.01 3.4E-07 54.3 7.4 27 212-238 27-53 (217)
121 3hws_A ATP-dependent CLP prote 96.2 0.0034 1.2E-07 62.6 4.6 47 193-239 17-76 (363)
122 3dzd_A Transcriptional regulat 96.0 0.08 2.7E-06 52.7 13.5 49 191-239 129-177 (368)
123 3kb2_A SPBC2 prophage-derived 95.9 0.0044 1.5E-07 54.2 3.3 24 216-239 3-26 (173)
124 1nks_A Adenylate kinase; therm 95.9 0.0083 2.8E-07 53.5 5.2 27 215-241 2-28 (194)
125 1odf_A YGR205W, hypothetical 3 95.8 0.0081 2.8E-07 57.7 5.3 30 211-240 28-57 (290)
126 1ex7_A Guanylate kinase; subst 95.8 0.0029 9.8E-08 56.4 2.0 28 215-242 2-29 (186)
127 2q6t_A DNAB replication FORK h 95.8 0.076 2.6E-06 54.4 12.7 53 213-271 199-252 (444)
128 2yvu_A Probable adenylyl-sulfa 95.8 0.0096 3.3E-07 53.0 5.2 29 213-241 12-40 (186)
129 1ly1_A Polynucleotide kinase; 95.8 0.0051 1.7E-07 54.3 3.4 22 215-236 3-24 (181)
130 2r6a_A DNAB helicase, replicat 95.8 0.097 3.3E-06 53.7 13.5 36 214-249 203-239 (454)
131 1ny5_A Transcriptional regulat 95.8 0.16 5.5E-06 50.9 14.8 47 192-238 138-184 (387)
132 3uie_A Adenylyl-sulfate kinase 95.8 0.0093 3.2E-07 53.9 5.1 27 213-239 24-50 (200)
133 4a1f_A DNAB helicase, replicat 95.7 0.029 9.9E-07 54.9 8.8 52 214-271 46-97 (338)
134 2ewv_A Twitching motility prot 95.7 0.0076 2.6E-07 60.2 4.6 109 213-332 135-243 (372)
135 3trf_A Shikimate kinase, SK; a 95.7 0.0052 1.8E-07 54.6 3.1 26 214-239 5-30 (185)
136 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0057 1.9E-07 63.5 3.6 44 192-239 23-66 (500)
137 2rhm_A Putative kinase; P-loop 95.7 0.0071 2.4E-07 54.1 3.9 25 214-238 5-29 (193)
138 1q57_A DNA primase/helicase; d 95.6 0.032 1.1E-06 58.3 9.2 37 213-249 241-278 (503)
139 3vaa_A Shikimate kinase, SK; s 95.6 0.0061 2.1E-07 55.0 3.3 26 214-239 25-50 (199)
140 2dr3_A UPF0273 protein PH0284; 95.6 0.0073 2.5E-07 56.3 3.7 36 214-249 23-58 (247)
141 1tue_A Replication protein E1; 95.5 0.0089 3.1E-07 53.6 3.9 41 198-239 43-83 (212)
142 3bgw_A DNAB-like replicative h 95.5 0.025 8.6E-07 57.8 7.9 37 213-249 196-232 (444)
143 3lw7_A Adenylate kinase relate 95.5 0.0069 2.4E-07 53.0 3.2 20 215-234 2-21 (179)
144 1zp6_A Hypothetical protein AT 95.5 0.0075 2.6E-07 53.9 3.4 24 214-237 9-32 (191)
145 2r2a_A Uncharacterized protein 95.5 0.02 7E-07 51.5 6.1 22 216-237 7-28 (199)
146 1kag_A SKI, shikimate kinase I 95.4 0.0061 2.1E-07 53.5 2.6 25 215-239 5-29 (173)
147 1gvn_B Zeta; postsegregational 95.4 0.012 4.1E-07 56.5 4.8 26 213-238 32-57 (287)
148 1kht_A Adenylate kinase; phosp 95.4 0.0074 2.5E-07 53.8 3.1 26 215-240 4-29 (192)
149 1kgd_A CASK, peripheral plasma 95.4 0.0085 2.9E-07 53.1 3.2 26 214-239 5-30 (180)
150 2plr_A DTMP kinase, probable t 95.3 0.017 5.7E-07 52.4 5.2 28 214-241 4-31 (213)
151 2ze6_A Isopentenyl transferase 95.3 0.0095 3.2E-07 56.1 3.6 25 215-239 2-26 (253)
152 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.012 4E-07 54.3 4.1 36 214-249 23-58 (235)
153 1zuh_A Shikimate kinase; alpha 95.3 0.009 3.1E-07 52.2 3.1 26 214-239 7-32 (168)
154 3iij_A Coilin-interacting nucl 95.3 0.0076 2.6E-07 53.3 2.7 25 214-238 11-35 (180)
155 1tev_A UMP-CMP kinase; ploop, 95.3 0.01 3.5E-07 53.1 3.6 25 214-238 3-27 (196)
156 1uj2_A Uridine-cytidine kinase 95.3 0.01 3.5E-07 55.8 3.7 28 212-239 20-47 (252)
157 3cm0_A Adenylate kinase; ATP-b 95.3 0.012 3.9E-07 52.4 3.8 25 214-238 4-28 (186)
158 1knq_A Gluconate kinase; ALFA/ 95.3 0.013 4.3E-07 51.6 4.0 25 214-238 8-32 (175)
159 3tau_A Guanylate kinase, GMP k 95.2 0.0088 3E-07 54.4 3.0 27 213-239 7-33 (208)
160 3t61_A Gluconokinase; PSI-biol 95.2 0.0082 2.8E-07 54.3 2.7 25 214-238 18-42 (202)
161 4eun_A Thermoresistant glucoki 95.2 0.0098 3.3E-07 53.7 3.2 25 214-238 29-53 (200)
162 2vli_A Antibiotic resistance p 95.2 0.0076 2.6E-07 53.4 2.4 26 214-239 5-30 (183)
163 1nn5_A Similar to deoxythymidy 95.2 0.015 5.3E-07 52.8 4.6 28 214-241 9-36 (215)
164 2c95_A Adenylate kinase 1; tra 95.2 0.011 3.6E-07 53.0 3.4 25 214-238 9-33 (196)
165 2qor_A Guanylate kinase; phosp 95.2 0.0079 2.7E-07 54.5 2.5 26 214-239 12-37 (204)
166 1ukz_A Uridylate kinase; trans 95.2 0.012 4.2E-07 53.1 3.8 26 213-238 14-39 (203)
167 3a00_A Guanylate kinase, GMP k 95.2 0.0086 3E-07 53.4 2.7 27 215-241 2-28 (186)
168 2bwj_A Adenylate kinase 5; pho 95.1 0.011 3.6E-07 53.2 3.2 25 215-239 13-37 (199)
169 2iyv_A Shikimate kinase, SK; t 95.1 0.0082 2.8E-07 53.3 2.4 25 215-239 3-27 (184)
170 1xjc_A MOBB protein homolog; s 95.1 0.018 6.2E-07 50.2 4.5 28 214-241 4-31 (169)
171 3kl4_A SRP54, signal recogniti 95.1 0.072 2.5E-06 53.9 9.5 36 213-248 96-131 (433)
172 3p32_A Probable GTPase RV1496/ 95.1 0.032 1.1E-06 55.4 6.8 40 202-241 67-106 (355)
173 2zts_A Putative uncharacterize 95.1 0.012 4.1E-07 54.9 3.6 36 214-249 30-66 (251)
174 4a74_A DNA repair and recombin 95.1 0.023 7.7E-07 52.3 5.4 27 213-239 24-50 (231)
175 2z0h_A DTMP kinase, thymidylat 95.1 0.029 9.9E-07 50.1 5.9 25 216-240 2-26 (197)
176 1qf9_A UMP/CMP kinase, protein 95.1 0.013 4.6E-07 52.2 3.6 26 214-239 6-31 (194)
177 1via_A Shikimate kinase; struc 95.1 0.01 3.5E-07 52.2 2.8 24 216-239 6-29 (175)
178 1y63_A LMAJ004144AAA protein; 95.0 0.012 4.2E-07 52.3 3.3 24 214-237 10-33 (184)
179 1e6c_A Shikimate kinase; phosp 95.0 0.01 3.4E-07 52.0 2.6 25 215-239 3-27 (173)
180 2cdn_A Adenylate kinase; phosp 95.0 0.014 4.7E-07 52.7 3.6 26 214-239 20-45 (201)
181 3cmu_A Protein RECA, recombina 95.0 0.026 8.9E-07 67.3 6.6 37 213-249 1426-1462(2050)
182 2jaq_A Deoxyguanosine kinase; 95.0 0.013 4.3E-07 52.9 3.3 24 216-239 2-25 (205)
183 3ney_A 55 kDa erythrocyte memb 95.0 0.013 4.4E-07 52.6 3.2 27 213-239 18-44 (197)
184 2wwf_A Thymidilate kinase, put 94.9 0.013 4.5E-07 53.2 3.3 28 214-241 10-37 (212)
185 2xxa_A Signal recognition part 94.9 0.11 3.7E-06 52.8 10.3 37 213-249 99-136 (433)
186 2px0_A Flagellar biosynthesis 94.9 0.056 1.9E-06 52.0 7.8 37 213-249 104-141 (296)
187 3tr0_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 52.9 3.2 25 214-238 7-31 (205)
188 1aky_A Adenylate kinase; ATP:A 94.9 0.013 4.6E-07 53.6 3.2 26 214-239 4-29 (220)
189 3asz_A Uridine kinase; cytidin 94.9 0.017 5.8E-07 52.5 3.9 27 213-239 5-31 (211)
190 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.015 5.1E-07 55.0 3.6 26 214-239 4-29 (260)
191 3dm5_A SRP54, signal recogniti 94.9 0.062 2.1E-06 54.5 8.3 35 213-247 99-133 (443)
192 3tqc_A Pantothenate kinase; bi 94.9 0.021 7.3E-07 55.4 4.7 47 193-239 69-117 (321)
193 3ice_A Transcription terminati 94.8 0.06 2.1E-06 53.2 7.8 29 214-242 174-202 (422)
194 1uf9_A TT1252 protein; P-loop, 94.8 0.017 5.7E-07 52.1 3.7 26 212-237 6-31 (203)
195 1sky_E F1-ATPase, F1-ATP synth 94.8 0.06 2.1E-06 54.8 8.0 32 215-246 152-183 (473)
196 2pt5_A Shikimate kinase, SK; a 94.8 0.015 5.3E-07 50.5 3.3 24 216-239 2-25 (168)
197 2pez_A Bifunctional 3'-phospho 94.8 0.028 9.5E-07 49.6 5.0 27 214-240 5-31 (179)
198 2bdt_A BH3686; alpha-beta prot 94.8 0.017 5.7E-07 51.5 3.6 22 215-236 3-24 (189)
199 2j41_A Guanylate kinase; GMP, 94.8 0.015 5.2E-07 52.5 3.2 25 214-238 6-30 (207)
200 2pbr_A DTMP kinase, thymidylat 94.8 0.016 5.5E-07 51.7 3.3 25 216-240 2-26 (195)
201 3fb4_A Adenylate kinase; psych 94.7 0.016 5.6E-07 52.8 3.3 23 216-238 2-24 (216)
202 1cke_A CK, MSSA, protein (cyti 94.7 0.017 5.7E-07 53.2 3.3 24 215-238 6-29 (227)
203 2qt1_A Nicotinamide riboside k 94.7 0.018 6.2E-07 52.1 3.5 26 213-238 20-45 (207)
204 2p5t_B PEZT; postsegregational 94.6 0.018 6.1E-07 54.2 3.4 27 213-239 31-57 (253)
205 2ga8_A Hypothetical 39.9 kDa p 94.6 0.024 8E-07 55.6 4.3 29 212-240 22-50 (359)
206 1zd8_A GTP:AMP phosphotransfer 94.6 0.017 5.8E-07 53.3 3.1 25 214-238 7-31 (227)
207 3dl0_A Adenylate kinase; phosp 94.6 0.018 6.1E-07 52.6 3.2 23 216-238 2-24 (216)
208 3e70_C DPA, signal recognition 94.6 0.046 1.6E-06 53.4 6.3 30 212-241 127-156 (328)
209 4gp7_A Metallophosphoesterase; 94.6 0.016 5.5E-07 50.8 2.7 21 214-234 9-29 (171)
210 2r8r_A Sensor protein; KDPD, P 94.6 0.039 1.3E-06 50.4 5.3 34 215-248 7-40 (228)
211 2z43_A DNA repair and recombin 94.5 0.028 9.5E-07 55.0 4.7 36 214-249 107-148 (324)
212 1zu4_A FTSY; GTPase, signal re 94.5 0.048 1.7E-06 53.1 6.3 36 213-248 104-139 (320)
213 3k1j_A LON protease, ATP-depen 94.5 0.022 7.4E-07 61.0 4.2 51 187-241 37-87 (604)
214 2v54_A DTMP kinase, thymidylat 94.5 0.017 6E-07 52.0 3.0 25 214-238 4-28 (204)
215 2bbw_A Adenylate kinase 4, AK4 94.5 0.018 6.3E-07 53.8 3.2 26 214-239 27-52 (246)
216 2if2_A Dephospho-COA kinase; a 94.5 0.019 6.6E-07 51.8 3.2 21 216-236 3-23 (204)
217 1gtv_A TMK, thymidylate kinase 94.5 0.014 4.8E-07 53.1 2.3 25 216-240 2-26 (214)
218 3fwy_A Light-independent proto 94.5 0.033 1.1E-06 54.1 5.0 38 212-249 46-83 (314)
219 1zak_A Adenylate kinase; ATP:A 94.5 0.017 5.9E-07 53.0 2.8 26 214-239 5-30 (222)
220 3e1s_A Exodeoxyribonuclease V, 94.4 0.12 4E-06 54.7 9.5 33 214-246 204-236 (574)
221 2grj_A Dephospho-COA kinase; T 94.4 0.027 9.3E-07 50.4 3.9 26 213-238 11-36 (192)
222 2hf9_A Probable hydrogenase ni 94.4 0.041 1.4E-06 50.4 5.3 42 198-241 24-65 (226)
223 2qmh_A HPR kinase/phosphorylas 94.4 0.02 6.9E-07 51.1 3.0 25 214-238 34-58 (205)
224 1g41_A Heat shock protein HSLU 94.4 0.025 8.7E-07 57.4 4.1 49 192-240 16-76 (444)
225 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.085 2.9E-06 51.6 7.8 85 215-311 172-256 (330)
226 3be4_A Adenylate kinase; malar 94.4 0.019 6.5E-07 52.6 2.9 24 215-238 6-29 (217)
227 1rj9_A FTSY, signal recognitio 94.4 0.034 1.1E-06 53.8 4.8 36 213-249 101-136 (304)
228 3gmt_A Adenylate kinase; ssgci 94.4 0.043 1.5E-06 50.4 5.2 24 215-238 9-32 (230)
229 1u0j_A DNA replication protein 94.4 0.032 1.1E-06 52.4 4.4 39 200-238 90-128 (267)
230 1m7g_A Adenylylsulfate kinase; 94.4 0.026 9.1E-07 51.3 3.8 27 213-239 24-50 (211)
231 2ehv_A Hypothetical protein PH 94.3 0.024 8.3E-07 52.8 3.6 36 214-249 30-66 (251)
232 2orw_A Thymidine kinase; TMTK, 94.3 0.034 1.2E-06 49.4 4.4 27 215-241 4-30 (184)
233 1jjv_A Dephospho-COA kinase; P 94.3 0.021 7.3E-07 51.6 3.1 22 215-236 3-24 (206)
234 2wsm_A Hydrogenase expression/ 94.3 0.037 1.3E-06 50.5 4.8 43 197-241 15-57 (221)
235 1lvg_A Guanylate kinase, GMP k 94.3 0.017 5.7E-07 52.1 2.4 26 214-239 4-29 (198)
236 1vma_A Cell division protein F 94.3 0.04 1.4E-06 53.3 5.1 36 213-248 103-138 (306)
237 1j8m_F SRP54, signal recogniti 94.2 0.059 2E-06 51.9 6.1 36 214-249 98-133 (297)
238 4edh_A DTMP kinase, thymidylat 94.2 0.077 2.6E-06 48.3 6.5 28 214-241 6-33 (213)
239 1puj_A YLQF, conserved hypothe 94.2 0.3 1E-05 46.5 10.9 40 57-97 7-48 (282)
240 3exa_A TRNA delta(2)-isopenten 94.2 0.027 9.1E-07 54.2 3.5 25 214-238 3-27 (322)
241 2ck3_D ATP synthase subunit be 94.2 0.17 6E-06 51.3 9.6 53 214-269 153-206 (482)
242 3hjn_A DTMP kinase, thymidylat 94.2 0.046 1.6E-06 49.2 4.9 34 216-249 2-35 (197)
243 2jeo_A Uridine-cytidine kinase 94.1 0.03 1E-06 52.3 3.7 26 213-238 24-49 (245)
244 3cmw_A Protein RECA, recombina 94.1 0.054 1.8E-06 63.8 6.5 49 201-249 369-418 (1706)
245 3foz_A TRNA delta(2)-isopenten 94.1 0.032 1.1E-06 53.5 3.8 26 213-238 9-34 (316)
246 1s96_A Guanylate kinase, GMP k 94.1 0.024 8.2E-07 52.0 2.9 26 214-239 16-41 (219)
247 3a8t_A Adenylate isopentenyltr 94.1 0.026 8.8E-07 55.0 3.2 26 214-239 40-65 (339)
248 4e22_A Cytidylate kinase; P-lo 94.1 0.028 9.6E-07 52.8 3.4 26 214-239 27-52 (252)
249 1a7j_A Phosphoribulokinase; tr 94.1 0.018 6.1E-07 55.4 2.0 27 213-239 4-30 (290)
250 3d3q_A TRNA delta(2)-isopenten 94.0 0.029 1E-06 54.7 3.6 25 215-239 8-32 (340)
251 1e4v_A Adenylate kinase; trans 94.0 0.03 1E-06 51.1 3.4 23 216-238 2-24 (214)
252 4eaq_A DTMP kinase, thymidylat 94.0 0.063 2.2E-06 49.5 5.6 28 213-240 25-52 (229)
253 3ake_A Cytidylate kinase; CMP 94.0 0.031 1.1E-06 50.5 3.4 24 216-239 4-27 (208)
254 3crm_A TRNA delta(2)-isopenten 94.0 0.03 1E-06 54.3 3.4 25 215-239 6-30 (323)
255 2xb4_A Adenylate kinase; ATP-b 93.9 0.03 1E-06 51.4 3.3 23 216-238 2-24 (223)
256 1znw_A Guanylate kinase, GMP k 93.9 0.027 9.3E-07 51.1 2.9 26 214-239 20-45 (207)
257 1cr0_A DNA primase/helicase; R 93.9 0.045 1.5E-06 52.7 4.7 36 214-249 35-71 (296)
258 2f6r_A COA synthase, bifunctio 93.9 0.034 1.2E-06 53.1 3.7 24 213-236 74-97 (281)
259 1htw_A HI0065; nucleotide-bind 93.9 0.036 1.2E-06 47.9 3.5 26 213-238 32-57 (158)
260 3cmw_A Protein RECA, recombina 93.9 0.11 3.7E-06 61.3 8.4 36 214-249 732-767 (1706)
261 1np6_A Molybdopterin-guanine d 93.9 0.051 1.7E-06 47.7 4.4 27 214-240 6-32 (174)
262 1z6g_A Guanylate kinase; struc 93.8 0.024 8E-07 52.0 2.3 25 214-238 23-47 (218)
263 1vht_A Dephospho-COA kinase; s 93.8 0.036 1.2E-06 50.6 3.6 23 214-236 4-26 (218)
264 3aez_A Pantothenate kinase; tr 93.8 0.037 1.3E-06 53.7 3.8 29 212-240 88-116 (312)
265 3cmu_A Protein RECA, recombina 93.8 0.12 4E-06 61.9 8.6 50 200-249 368-418 (2050)
266 3r20_A Cytidylate kinase; stru 93.8 0.034 1.2E-06 51.3 3.3 26 214-239 9-34 (233)
267 3b9q_A Chloroplast SRP recepto 93.8 0.054 1.8E-06 52.3 4.9 29 213-241 99-127 (302)
268 1pzn_A RAD51, DNA repair and r 93.8 0.059 2E-06 53.2 5.3 26 213-238 130-155 (349)
269 1ak2_A Adenylate kinase isoenz 93.8 0.036 1.2E-06 51.3 3.5 25 215-239 17-41 (233)
270 1g8f_A Sulfate adenylyltransfe 93.7 0.048 1.6E-06 56.4 4.6 48 193-240 374-421 (511)
271 2fz4_A DNA repair protein RAD2 93.7 0.8 2.7E-05 42.2 12.6 42 192-238 91-132 (237)
272 1sq5_A Pantothenate kinase; P- 93.6 0.072 2.5E-06 51.6 5.5 28 212-239 78-105 (308)
273 1fx0_B ATP synthase beta chain 93.6 0.069 2.4E-06 54.5 5.4 35 214-248 165-200 (498)
274 1yrb_A ATP(GTP)binding protein 93.6 0.07 2.4E-06 50.1 5.2 34 214-248 14-47 (262)
275 2f1r_A Molybdopterin-guanine d 93.6 0.033 1.1E-06 48.8 2.7 27 215-241 3-29 (171)
276 2i1q_A DNA repair and recombin 93.5 0.094 3.2E-06 51.1 6.3 26 213-238 97-122 (322)
277 3l0o_A Transcription terminati 93.5 0.17 5.8E-06 50.0 7.7 28 214-241 175-202 (427)
278 3lv8_A DTMP kinase, thymidylat 93.5 0.094 3.2E-06 48.5 5.8 28 214-241 27-54 (236)
279 2j9r_A Thymidine kinase; TK1, 93.5 0.11 3.7E-06 47.0 6.0 111 213-333 27-138 (214)
280 1ltq_A Polynucleotide kinase; 93.5 0.04 1.4E-06 53.1 3.4 23 215-237 3-25 (301)
281 1nlf_A Regulatory protein REPA 93.5 0.069 2.3E-06 50.9 5.0 27 214-240 30-56 (279)
282 3nwj_A ATSK2; P loop, shikimat 93.5 0.029 1E-06 52.5 2.3 25 215-239 49-73 (250)
283 3lda_A DNA repair protein RAD5 93.4 0.061 2.1E-06 54.0 4.7 36 202-237 166-201 (400)
284 3lnc_A Guanylate kinase, GMP k 93.4 0.026 9E-07 52.1 1.9 25 214-238 27-52 (231)
285 4tmk_A Protein (thymidylate ki 93.4 0.11 3.7E-06 47.3 5.9 27 215-241 4-30 (213)
286 4gzl_A RAS-related C3 botulinu 93.4 0.046 1.6E-06 49.3 3.5 46 190-237 8-53 (204)
287 3tqf_A HPR(Ser) kinase; transf 93.4 0.052 1.8E-06 47.1 3.5 24 214-237 16-39 (181)
288 3v9p_A DTMP kinase, thymidylat 93.3 0.084 2.9E-06 48.5 5.1 28 214-241 25-52 (227)
289 3ld9_A DTMP kinase, thymidylat 93.3 0.1 3.5E-06 47.7 5.7 28 213-240 20-47 (223)
290 2v3c_C SRP54, signal recogniti 93.3 0.046 1.6E-06 55.6 3.6 35 214-248 99-133 (432)
291 3end_A Light-independent proto 93.3 0.075 2.6E-06 51.4 5.0 37 213-249 40-76 (307)
292 3zvl_A Bifunctional polynucleo 93.2 0.04 1.4E-06 55.9 3.0 26 213-238 257-282 (416)
293 3cr8_A Sulfate adenylyltranfer 93.2 0.078 2.7E-06 55.6 5.2 49 193-241 348-396 (552)
294 3upu_A ATP-dependent DNA helic 93.2 0.071 2.4E-06 54.9 4.9 29 215-243 46-74 (459)
295 1cp2_A CP2, nitrogenase iron p 93.2 0.088 3E-06 49.7 5.2 35 215-249 2-36 (269)
296 2og2_A Putative signal recogni 93.2 0.075 2.6E-06 52.5 4.8 29 213-241 156-184 (359)
297 3zq6_A Putative arsenical pump 93.1 0.14 4.9E-06 49.9 6.7 36 214-249 14-49 (324)
298 1ls1_A Signal recognition part 93.0 0.088 3E-06 50.6 5.0 36 213-248 97-132 (295)
299 2ocp_A DGK, deoxyguanosine kin 93.0 0.059 2E-06 50.0 3.6 26 214-239 2-27 (241)
300 1svm_A Large T antigen; AAA+ f 93.0 0.071 2.4E-06 53.1 4.3 27 212-238 167-193 (377)
301 3eph_A TRNA isopentenyltransfe 93.0 0.059 2E-06 53.7 3.7 25 215-239 3-27 (409)
302 2gks_A Bifunctional SAT/APS ki 92.9 0.12 3.9E-06 54.4 6.1 48 193-240 351-398 (546)
303 2p67_A LAO/AO transport system 92.9 0.13 4.6E-06 50.5 6.3 30 212-241 54-83 (341)
304 2i3b_A HCR-ntpase, human cance 92.9 0.049 1.7E-06 48.6 2.7 24 216-239 3-26 (189)
305 2yhs_A FTSY, cell division pro 92.9 0.083 2.8E-06 54.1 4.7 36 213-249 292-327 (503)
306 2j37_W Signal recognition part 92.8 0.12 4.1E-06 53.4 5.9 36 213-248 100-135 (504)
307 1m8p_A Sulfate adenylyltransfe 92.8 0.11 3.8E-06 54.8 5.7 28 213-240 395-422 (573)
308 3ug7_A Arsenical pump-driving 92.8 0.15 5.2E-06 50.2 6.4 39 211-249 23-61 (349)
309 2afh_E Nitrogenase iron protei 92.7 0.11 3.7E-06 49.7 5.1 35 215-249 3-37 (289)
310 2qm8_A GTPase/ATPase; G protei 92.6 0.15 5.3E-06 49.9 6.2 29 212-240 53-81 (337)
311 3io3_A DEHA2D07832P; chaperone 92.6 0.12 4.2E-06 50.8 5.4 38 212-249 16-55 (348)
312 3iqw_A Tail-anchored protein t 92.6 0.13 4.4E-06 50.3 5.6 37 213-249 15-51 (334)
313 4akg_A Glutathione S-transfera 92.6 0.57 1.9E-05 58.0 12.1 154 215-384 1268-1452(2695)
314 2ged_A SR-beta, signal recogni 92.6 0.079 2.7E-06 46.9 3.7 24 214-237 48-71 (193)
315 3tif_A Uncharacterized ABC tra 92.5 0.05 1.7E-06 50.4 2.4 25 214-238 31-55 (235)
316 3b85_A Phosphate starvation-in 92.4 0.058 2E-06 48.9 2.6 23 215-237 23-45 (208)
317 4hlc_A DTMP kinase, thymidylat 92.4 0.12 4E-06 46.8 4.7 29 215-243 3-31 (205)
318 1q3t_A Cytidylate kinase; nucl 92.4 0.073 2.5E-06 49.2 3.4 26 213-238 15-40 (236)
319 2dyk_A GTP-binding protein; GT 92.4 0.08 2.7E-06 45.1 3.4 23 215-237 2-24 (161)
320 1oix_A RAS-related protein RAB 92.4 0.074 2.5E-06 47.3 3.2 24 214-237 29-52 (191)
321 2onk_A Molybdate/tungstate ABC 92.3 0.066 2.3E-06 49.7 3.0 24 215-238 25-48 (240)
322 2wji_A Ferrous iron transport 92.3 0.085 2.9E-06 45.5 3.5 22 215-236 4-25 (165)
323 2pcj_A ABC transporter, lipopr 92.2 0.061 2.1E-06 49.4 2.6 24 214-237 30-53 (224)
324 3kjh_A CO dehydrogenase/acetyl 92.2 0.12 4.1E-06 48.0 4.6 33 217-249 3-35 (254)
325 2cbz_A Multidrug resistance-as 92.1 0.059 2E-06 50.0 2.4 25 214-238 31-55 (237)
326 2v9p_A Replication protein E1; 92.1 0.071 2.4E-06 51.3 2.9 26 213-238 125-150 (305)
327 1p9r_A General secretion pathw 92.0 0.2 7E-06 50.5 6.4 82 213-305 166-247 (418)
328 1mv5_A LMRA, multidrug resista 92.0 0.072 2.5E-06 49.6 2.8 25 213-237 27-51 (243)
329 2axn_A 6-phosphofructo-2-kinas 92.0 0.14 4.7E-06 53.5 5.2 30 213-242 34-63 (520)
330 2zej_A Dardarin, leucine-rich 92.0 0.062 2.1E-06 47.4 2.2 21 216-236 4-24 (184)
331 2f9l_A RAB11B, member RAS onco 91.9 0.078 2.7E-06 47.4 2.9 24 214-237 5-28 (199)
332 2f62_A Nucleoside 2-deoxyribos 91.9 0.83 2.8E-05 39.2 9.2 65 32-100 27-98 (161)
333 1ypw_A Transitional endoplasmi 91.9 0.08 2.7E-06 58.5 3.5 153 190-363 476-661 (806)
334 3f9v_A Minichromosome maintena 91.9 0.064 2.2E-06 57.0 2.6 48 191-238 295-351 (595)
335 1b0u_A Histidine permease; ABC 91.9 0.065 2.2E-06 50.5 2.4 25 214-238 32-56 (262)
336 3vkw_A Replicase large subunit 91.8 0.86 2.9E-05 46.0 10.5 39 198-236 142-183 (446)
337 3bfv_A CAPA1, CAPB2, membrane 91.8 0.23 7.7E-06 47.0 6.0 52 198-249 64-118 (271)
338 1fzq_A ADP-ribosylation factor 91.8 0.13 4.5E-06 45.1 4.2 25 213-237 15-39 (181)
339 3fdi_A Uncharacterized protein 91.7 0.1 3.6E-06 46.9 3.5 25 215-239 7-31 (201)
340 2ce2_X GTPase HRAS; signaling 91.7 0.092 3.1E-06 44.8 3.0 22 216-237 5-26 (166)
341 2www_A Methylmalonic aciduria 91.7 0.16 5.6E-06 50.0 5.2 29 213-241 73-101 (349)
342 2ffh_A Protein (FFH); SRP54, s 91.7 0.16 5.5E-06 51.3 5.2 35 213-247 97-131 (425)
343 3cio_A ETK, tyrosine-protein k 91.7 0.24 8.1E-06 47.6 6.2 38 212-249 102-140 (299)
344 3ea0_A ATPase, para family; al 91.7 0.19 6.6E-06 46.4 5.4 36 214-249 4-41 (245)
345 2zu0_C Probable ATP-dependent 91.7 0.084 2.9E-06 49.9 2.9 24 214-237 46-69 (267)
346 2olj_A Amino acid ABC transpor 91.7 0.072 2.5E-06 50.2 2.4 25 214-238 50-74 (263)
347 3gfo_A Cobalt import ATP-bindi 91.6 0.075 2.6E-06 50.4 2.5 24 214-237 34-57 (275)
348 2d2e_A SUFC protein; ABC-ATPas 91.6 0.091 3.1E-06 49.2 3.0 24 214-237 29-52 (250)
349 2qi9_C Vitamin B12 import ATP- 91.6 0.091 3.1E-06 49.1 3.0 26 214-239 26-51 (249)
350 2wjg_A FEOB, ferrous iron tran 91.5 0.12 4E-06 45.5 3.5 24 214-237 7-30 (188)
351 1z2a_A RAS-related protein RAB 91.5 0.13 4.3E-06 44.2 3.7 24 214-237 5-28 (168)
352 2ghi_A Transport protein; mult 91.5 0.076 2.6E-06 50.0 2.4 25 214-238 46-70 (260)
353 2iut_A DNA translocase FTSK; n 91.5 1.5 5E-05 45.8 12.1 64 295-360 344-420 (574)
354 1tq4_A IIGP1, interferon-induc 91.5 0.089 3E-06 53.0 2.9 25 213-237 68-92 (413)
355 1ji0_A ABC transporter; ATP bi 91.5 0.081 2.8E-06 49.1 2.5 24 214-237 32-55 (240)
356 1vpl_A ABC transporter, ATP-bi 91.5 0.077 2.6E-06 49.8 2.4 24 214-237 41-64 (256)
357 1p5z_B DCK, deoxycytidine kina 91.4 0.059 2E-06 50.8 1.5 27 213-239 23-49 (263)
358 2pze_A Cystic fibrosis transme 91.3 0.086 2.9E-06 48.6 2.5 26 214-239 34-59 (229)
359 1g6h_A High-affinity branched- 91.3 0.085 2.9E-06 49.6 2.5 25 214-238 33-57 (257)
360 1sgw_A Putative ABC transporte 91.3 0.072 2.4E-06 48.5 1.9 24 215-238 36-59 (214)
361 2ixe_A Antigen peptide transpo 91.3 0.081 2.8E-06 50.1 2.4 25 214-238 45-69 (271)
362 2ff7_A Alpha-hemolysin translo 91.3 0.086 2.9E-06 49.2 2.5 24 214-237 35-58 (247)
363 4g1u_C Hemin import ATP-bindin 91.3 0.1 3.6E-06 49.2 3.1 25 214-238 37-61 (266)
364 2nzj_A GTP-binding protein REM 91.3 0.14 4.7E-06 44.4 3.7 23 214-236 4-26 (175)
365 2h92_A Cytidylate kinase; ross 91.1 0.1 3.4E-06 47.6 2.7 24 215-238 4-27 (219)
366 4dzz_A Plasmid partitioning pr 91.1 0.18 6.1E-06 45.2 4.4 35 215-249 2-37 (206)
367 2vp4_A Deoxynucleoside kinase; 91.1 0.086 3E-06 48.6 2.3 25 213-237 19-43 (230)
368 1kao_A RAP2A; GTP-binding prot 91.1 0.11 3.8E-06 44.4 2.9 23 215-237 4-26 (167)
369 1c9k_A COBU, adenosylcobinamid 91.1 0.099 3.4E-06 46.0 2.5 29 217-249 2-30 (180)
370 1nij_A Hypothetical protein YJ 91.1 0.12 4.2E-06 50.2 3.5 26 213-238 3-28 (318)
371 2yz2_A Putative ABC transporte 91.1 0.089 3E-06 49.7 2.4 24 214-237 33-56 (266)
372 2hjg_A GTP-binding protein ENG 91.0 0.94 3.2E-05 46.0 10.2 25 213-237 174-198 (436)
373 2lkc_A Translation initiation 91.0 0.13 4.3E-06 44.7 3.2 24 213-236 7-30 (178)
374 3la6_A Tyrosine-protein kinase 90.9 0.34 1.2E-05 46.2 6.4 52 198-249 74-128 (286)
375 1z08_A RAS-related protein RAB 90.9 0.12 4E-06 44.5 2.9 24 214-237 6-29 (170)
376 1r8s_A ADP-ribosylation factor 90.9 0.13 4.3E-06 44.1 3.0 21 217-237 3-23 (164)
377 3q72_A GTP-binding protein RAD 90.9 0.11 3.8E-06 44.5 2.7 21 216-236 4-24 (166)
378 3q85_A GTP-binding protein REM 90.9 0.11 3.9E-06 44.6 2.8 21 216-236 4-24 (169)
379 1ek0_A Protein (GTP-binding pr 90.9 0.12 4.1E-06 44.4 2.9 22 216-237 5-26 (170)
380 3con_A GTPase NRAS; structural 90.9 0.12 4E-06 45.6 2.9 23 215-237 22-44 (190)
381 2nq2_C Hypothetical ABC transp 90.9 0.1 3.5E-06 48.9 2.5 25 214-238 31-55 (253)
382 2gj8_A MNME, tRNA modification 90.9 0.12 4.1E-06 45.0 2.9 23 215-237 5-27 (172)
383 3sop_A Neuronal-specific septi 90.8 0.12 4.2E-06 48.8 3.2 23 216-238 4-26 (270)
384 1svi_A GTP-binding protein YSX 90.8 0.14 4.7E-06 45.4 3.3 25 213-237 22-46 (195)
385 2fn4_A P23, RAS-related protei 90.8 0.19 6.3E-06 43.7 4.1 25 213-237 8-32 (181)
386 2erx_A GTP-binding protein DI- 90.8 0.11 3.9E-06 44.6 2.7 22 215-236 4-25 (172)
387 1nrj_B SR-beta, signal recogni 90.8 0.13 4.5E-06 46.6 3.2 25 213-237 11-35 (218)
388 1c1y_A RAS-related protein RAP 90.8 0.12 4.3E-06 44.1 2.9 22 216-237 5-26 (167)
389 2iwr_A Centaurin gamma 1; ANK 90.7 0.11 3.9E-06 45.1 2.7 23 215-237 8-30 (178)
390 3ihw_A Centg3; RAS, centaurin, 90.7 0.12 4.2E-06 45.5 2.9 24 214-237 20-43 (184)
391 1z0j_A RAB-22, RAS-related pro 90.7 0.13 4.3E-06 44.3 2.9 23 215-237 7-29 (170)
392 2ihy_A ABC transporter, ATP-bi 90.7 0.1 3.6E-06 49.6 2.5 25 214-238 47-71 (279)
393 3def_A T7I23.11 protein; chlor 90.7 0.23 8E-06 46.6 4.9 25 213-237 35-59 (262)
394 1wms_A RAB-9, RAB9, RAS-relate 90.7 0.13 4.4E-06 44.7 2.9 24 214-237 7-30 (177)
395 1u8z_A RAS-related protein RAL 90.7 0.19 6.4E-06 42.9 4.0 23 215-237 5-27 (168)
396 3tmk_A Thymidylate kinase; pho 90.7 0.16 5.5E-06 46.2 3.6 27 214-240 5-31 (216)
397 1bif_A 6-phosphofructo-2-kinas 90.7 0.21 7.3E-06 51.4 5.0 29 214-242 39-67 (469)
398 1h65_A Chloroplast outer envel 90.6 0.23 8E-06 46.8 4.9 26 212-237 37-62 (270)
399 1x6v_B Bifunctional 3'-phospho 90.6 0.22 7.6E-06 52.8 5.1 27 213-239 51-77 (630)
400 3fvq_A Fe(3+) IONS import ATP- 90.6 0.12 4.2E-06 50.8 3.0 24 214-237 30-53 (359)
401 1m7b_A RND3/RHOE small GTP-bin 90.6 0.17 5.9E-06 44.4 3.8 24 214-237 7-30 (184)
402 2hxs_A RAB-26, RAS-related pro 90.6 0.13 4.6E-06 44.6 3.0 24 214-237 6-29 (178)
403 3kta_A Chromosome segregation 90.5 0.14 4.9E-06 44.9 3.1 23 216-238 28-50 (182)
404 1ky3_A GTP-binding protein YPT 90.5 0.17 5.9E-06 43.9 3.7 25 213-237 7-31 (182)
405 2orv_A Thymidine kinase; TP4A 90.5 0.24 8.3E-06 45.2 4.6 104 214-332 19-125 (234)
406 2woo_A ATPase GET3; tail-ancho 90.5 0.29 1E-05 47.7 5.6 37 213-249 18-54 (329)
407 3nh6_A ATP-binding cassette SU 90.5 0.1 3.5E-06 50.3 2.2 24 214-237 80-103 (306)
408 2cjw_A GTP-binding protein GEM 90.5 0.13 4.4E-06 45.7 2.8 22 215-236 7-28 (192)
409 1m2o_B GTP-binding protein SAR 90.5 0.14 4.8E-06 45.4 3.0 23 215-237 24-46 (190)
410 2oze_A ORF delta'; para, walke 90.5 0.17 5.9E-06 48.5 3.9 48 199-249 22-72 (298)
411 2cxx_A Probable GTP-binding pr 90.4 0.14 4.6E-06 45.1 2.9 22 216-237 3-24 (190)
412 3c5c_A RAS-like protein 12; GD 90.4 0.14 4.7E-06 45.3 2.9 24 214-237 21-44 (187)
413 1r2q_A RAS-related protein RAB 90.4 0.14 4.8E-06 43.9 2.9 23 215-237 7-29 (170)
414 2woj_A ATPase GET3; tail-ancho 90.4 0.36 1.2E-05 47.6 6.2 37 213-249 17-55 (354)
415 1tf7_A KAIC; homohexamer, hexa 90.4 0.24 8.2E-06 51.8 5.2 36 214-249 281-316 (525)
416 1g16_A RAS-related protein SEC 90.3 0.2 6.7E-06 43.0 3.8 23 215-237 4-26 (170)
417 1xx6_A Thymidine kinase; NESG, 90.3 0.3 1E-05 43.4 5.0 34 214-247 8-41 (191)
418 3fkq_A NTRC-like two-domain pr 90.3 0.25 8.4E-06 49.2 4.9 38 212-249 141-179 (373)
419 3hdt_A Putative kinase; struct 90.2 0.19 6.4E-06 46.0 3.7 26 214-239 14-39 (223)
420 2r9v_A ATP synthase subunit al 90.2 0.37 1.3E-05 49.3 6.1 25 214-238 175-200 (515)
421 2y8e_A RAB-protein 6, GH09086P 90.2 0.15 5.3E-06 44.1 3.0 23 215-237 15-37 (179)
422 2bbs_A Cystic fibrosis transme 90.2 0.12 4.1E-06 49.4 2.5 25 214-238 64-88 (290)
423 1z0f_A RAB14, member RAS oncog 90.2 0.15 5.1E-06 44.2 2.9 24 214-237 15-38 (179)
424 3pqc_A Probable GTP-binding pr 90.2 0.16 5.5E-06 44.8 3.2 24 214-237 23-46 (195)
425 2bme_A RAB4A, RAS-related prot 90.1 0.16 5.4E-06 44.6 3.0 24 214-237 10-33 (186)
426 1upt_A ARL1, ADP-ribosylation 90.1 0.2 6.8E-06 43.1 3.6 24 214-237 7-30 (171)
427 2pjz_A Hypothetical protein ST 90.1 0.13 4.4E-06 48.4 2.5 25 214-238 30-54 (263)
428 3bc1_A RAS-related protein RAB 90.0 0.15 5.3E-06 44.8 2.9 24 214-237 11-34 (195)
429 3d31_A Sulfate/molybdate ABC t 90.0 0.14 4.7E-06 50.3 2.7 24 214-237 26-49 (348)
430 3kkq_A RAS-related protein M-R 90.0 0.16 5.5E-06 44.4 2.9 24 214-237 18-41 (183)
431 2qe7_A ATP synthase subunit al 89.9 0.41 1.4E-05 48.9 6.1 25 214-238 162-187 (502)
432 2yv5_A YJEQ protein; hydrolase 89.9 0.19 6.5E-06 48.4 3.6 34 200-239 156-189 (302)
433 4dsu_A GTPase KRAS, isoform 2B 89.9 0.16 5.5E-06 44.5 2.9 23 215-237 5-27 (189)
434 2yyz_A Sugar ABC transporter, 89.9 0.15 5.1E-06 50.3 2.9 24 214-237 29-52 (359)
435 3tw8_B RAS-related protein RAB 89.9 0.18 6.3E-06 43.7 3.3 24 213-236 8-31 (181)
436 1f6b_A SAR1; gtpases, N-termin 89.9 0.14 4.9E-06 45.7 2.6 22 215-236 26-47 (198)
437 4b3f_X DNA-binding protein smu 89.9 0.38 1.3E-05 51.7 6.3 40 198-241 193-232 (646)
438 3cbq_A GTP-binding protein REM 89.8 0.12 4.2E-06 46.0 2.1 22 214-235 23-44 (195)
439 1lw7_A Transcriptional regulat 89.8 0.19 6.6E-06 49.8 3.7 26 214-239 170-195 (365)
440 3rlf_A Maltose/maltodextrin im 89.8 0.15 5.2E-06 50.6 2.9 24 214-237 29-52 (381)
441 1mh1_A RAC1; GTP-binding, GTPa 89.8 0.17 5.7E-06 44.3 2.9 23 215-237 6-28 (186)
442 2it1_A 362AA long hypothetical 89.8 0.15 5.3E-06 50.3 2.9 24 214-237 29-52 (362)
443 3dz8_A RAS-related protein RAB 89.8 0.18 6.1E-06 44.6 3.1 23 215-237 24-46 (191)
444 4dkx_A RAS-related protein RAB 89.8 0.17 5.7E-06 46.2 2.9 21 216-236 15-35 (216)
445 2oil_A CATX-8, RAS-related pro 89.8 0.16 5.6E-06 44.8 2.9 24 214-237 25-48 (193)
446 2efe_B Small GTP-binding prote 89.7 0.17 5.8E-06 44.1 2.9 24 214-237 12-35 (181)
447 1z47_A CYSA, putative ABC-tran 89.7 0.16 5.6E-06 49.9 3.0 24 214-237 41-64 (355)
448 3bwd_D RAC-like GTP-binding pr 89.7 0.17 5.9E-06 44.1 2.9 23 215-237 9-31 (182)
449 1oxx_K GLCV, glucose, ABC tran 89.7 0.13 4.6E-06 50.6 2.4 24 214-237 31-54 (353)
450 1byi_A Dethiobiotin synthase; 89.7 0.31 1E-05 44.4 4.7 33 215-247 2-35 (224)
451 1moz_A ARL1, ADP-ribosylation 89.7 0.26 8.7E-06 43.0 4.0 24 213-236 17-40 (183)
452 2a9k_A RAS-related protein RAL 89.7 0.17 5.9E-06 44.2 2.9 24 214-237 18-41 (187)
453 2ew1_A RAS-related protein RAB 89.6 0.18 6.1E-06 45.3 3.0 24 214-237 26-49 (201)
454 2g3y_A GTP-binding protein GEM 89.6 0.17 5.7E-06 46.0 2.8 23 214-236 37-59 (211)
455 2g6b_A RAS-related protein RAB 89.6 0.18 6E-06 43.9 2.9 24 214-237 10-33 (180)
456 3t5g_A GTP-binding protein RHE 89.6 0.19 6.5E-06 43.8 3.1 23 214-236 6-28 (181)
457 1gwn_A RHO-related GTP-binding 89.6 0.18 6.1E-06 45.4 3.0 24 214-237 28-51 (205)
458 2atv_A RERG, RAS-like estrogen 89.6 0.18 6E-06 44.8 2.9 24 214-237 28-51 (196)
459 1v43_A Sugar-binding transport 89.5 0.16 5.6E-06 50.3 2.9 24 214-237 37-60 (372)
460 3clv_A RAB5 protein, putative; 89.5 0.18 6.1E-06 44.8 2.9 24 214-237 7-30 (208)
461 3tui_C Methionine import ATP-b 89.5 0.17 5.7E-06 49.9 2.9 24 214-237 54-77 (366)
462 1ihu_A Arsenical pump-driving 89.5 0.3 1E-05 51.9 5.1 37 213-249 7-43 (589)
463 2fg5_A RAB-22B, RAS-related pr 89.5 0.19 6.4E-06 44.5 3.0 24 214-237 23-46 (192)
464 3thx_A DNA mismatch repair pro 89.5 1.3 4.6E-05 49.2 10.4 23 213-235 661-683 (934)
465 4bas_A ADP-ribosylation factor 89.4 0.21 7.2E-06 44.3 3.3 24 213-236 16-39 (199)
466 3vr4_D V-type sodium ATPase su 89.4 0.55 1.9E-05 47.4 6.6 26 215-240 152-177 (465)
467 1zd9_A ADP-ribosylation factor 89.4 0.19 6.3E-06 44.4 2.9 23 215-237 23-45 (188)
468 1pui_A ENGB, probable GTP-bind 89.4 0.12 4.2E-06 46.4 1.7 23 214-236 26-48 (210)
469 2bov_A RAla, RAS-related prote 89.4 0.18 6.3E-06 44.9 2.9 24 214-237 14-37 (206)
470 1vg8_A RAS-related protein RAB 89.3 0.24 8.3E-06 44.2 3.7 25 213-237 7-31 (207)
471 3oes_A GTPase rhebl1; small GT 89.3 0.19 6.6E-06 44.8 3.0 24 214-237 24-47 (201)
472 2fh5_B SR-beta, signal recogni 89.3 0.19 6.4E-06 45.4 2.9 24 214-237 7-30 (214)
473 2gf9_A RAS-related protein RAB 89.2 0.19 6.7E-06 44.2 2.9 24 214-237 22-45 (189)
474 3t1o_A Gliding protein MGLA; G 89.2 0.19 6.6E-06 44.4 2.9 25 214-238 14-38 (198)
475 2a5j_A RAS-related protein RAB 89.2 0.19 6.6E-06 44.4 2.9 24 214-237 21-44 (191)
476 3reg_A RHO-like small GTPase; 89.2 0.2 6.7E-06 44.4 2.9 24 214-237 23-46 (194)
477 1g29_1 MALK, maltose transport 89.2 0.19 6.5E-06 49.9 3.0 24 214-237 29-52 (372)
478 3igf_A ALL4481 protein; two-do 89.2 0.33 1.1E-05 48.2 4.7 35 215-249 3-37 (374)
479 1z06_A RAS-related protein RAB 89.1 0.2 6.8E-06 44.1 2.9 24 214-237 20-43 (189)
480 2h17_A ADP-ribosylation factor 89.1 0.19 6.4E-06 44.0 2.7 23 215-237 22-44 (181)
481 1ega_A Protein (GTP-binding pr 89.1 0.23 7.8E-06 47.8 3.5 24 214-237 8-31 (301)
482 2gza_A Type IV secretion syste 89.1 0.22 7.5E-06 49.3 3.4 34 215-249 176-209 (361)
483 1zbd_A Rabphilin-3A; G protein 89.1 0.19 6.4E-06 44.9 2.7 24 214-237 8-31 (203)
484 3oaa_A ATP synthase subunit al 89.0 0.68 2.3E-05 47.2 6.9 24 214-237 162-186 (513)
485 3iev_A GTP-binding protein ERA 89.0 0.23 8E-06 47.9 3.5 26 212-237 8-33 (308)
486 1jwy_B Dynamin A GTPase domain 89.0 0.26 9E-06 47.5 3.9 25 213-237 23-47 (315)
487 1knx_A Probable HPR(Ser) kinas 88.9 0.22 7.6E-06 47.8 3.2 24 214-237 147-170 (312)
488 2gk6_A Regulator of nonsense t 88.9 0.49 1.7E-05 50.6 6.3 48 197-249 183-230 (624)
489 3tkl_A RAS-related protein RAB 88.9 0.21 7.2E-06 44.1 2.9 24 214-237 16-39 (196)
490 2bcg_Y Protein YP2, GTP-bindin 88.9 0.22 7.5E-06 44.6 3.0 24 214-237 8-31 (206)
491 2b6h_A ADP-ribosylation factor 88.8 0.2 6.8E-06 44.4 2.7 23 214-236 29-51 (192)
492 3ch4_B Pmkase, phosphomevalona 88.8 0.33 1.1E-05 43.4 4.1 26 213-238 10-35 (202)
493 2gf0_A GTP-binding protein DI- 88.8 0.3 1E-05 43.2 3.9 23 214-236 8-30 (199)
494 2p5s_A RAS and EF-hand domain 88.8 0.21 7.2E-06 44.5 2.9 24 214-237 28-51 (199)
495 3gd7_A Fusion complex of cysti 88.8 0.2 7E-06 50.0 3.0 24 214-237 47-70 (390)
496 3lxx_A GTPase IMAP family memb 88.8 0.26 8.8E-06 45.5 3.5 25 213-237 28-52 (239)
497 1x3s_A RAS-related protein RAB 88.8 0.22 7.4E-06 44.0 2.9 23 215-237 16-38 (195)
498 2o52_A RAS-related protein RAB 88.7 0.22 7.4E-06 44.5 2.9 23 214-236 25-47 (200)
499 1wcv_1 SOJ, segregation protei 88.6 0.31 1.1E-05 45.6 4.0 37 213-249 5-42 (257)
500 2qu8_A Putative nucleolar GTP- 88.5 0.23 7.8E-06 45.4 2.9 24 214-237 29-52 (228)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1e-43 Score=317.67 Aligned_cols=182 Identities=40% Similarity=0.715 Sum_probs=159.5
Q ss_pred CCCCCCCCCCCCCCCCcccEEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEec
Q 043805 1 MASSSSSSSSGLTAQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFS 80 (555)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~dvFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S 80 (555)
|+.++|+++++..++++|||||||+|+|+++.|+.+|+.+|+++||++|+|++++.+|+.+.+.|.+||++|+++|+|+|
T Consensus 19 ~~~~~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S 98 (204)
T 3ozi_A 19 DAISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIIS 98 (204)
T ss_dssp ---------------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEEC
T ss_pred cccccCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEE
Confidence 45677777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhHHHHHHHHHhHHh-cCCEEEEEEeeeCCccccccCCChhhhHHhhhhhCh-hhHHHHHHHHHHhhhhcCCc
Q 043805 81 KDYAASKWCLNELVKILDCKKI-NGQIVIPVFYQVDPSNVRKQSGSFGEAFDEYEKNFP-NMVQKWRDALTQASNISGYH 158 (555)
Q Consensus 81 ~~~~~s~~~~~El~~~~~~~~~-~~~~v~pv~~~v~p~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 158 (555)
++|++|+||++||.+++++.+. ++++||||||+|+|++|++|.|.|+++|.++..++. +++++|+.||++++++.|+
T Consensus 99 ~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~- 177 (204)
T 3ozi_A 99 SGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGW- 177 (204)
T ss_dssp TTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBE-
T ss_pred cccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCce-
Confidence 9999999999999999999865 578999999999999999999999999999998864 6799999999999999999
Q ss_pred ccccchhhHHHhhhhhhhhhccccc
Q 043805 159 ESRTFRNEAELVENIVEDISEKLED 183 (555)
Q Consensus 159 ~~~~~~~e~~~~~~i~~~v~~~l~~ 183 (555)
++.++.++.+++++|+.+|+.+++.
T Consensus 178 ~~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 178 HIGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 8888889999999999999988764
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=5.2e-42 Score=302.42 Aligned_cols=168 Identities=43% Similarity=0.734 Sum_probs=143.4
Q ss_pred CCCCcccEEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhHHH
Q 043805 13 TAQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCLNE 92 (555)
Q Consensus 13 ~~~~~~dvFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~E 92 (555)
+.+++|||||||+|+|++..|+.+|+.+|+++|+++|+|++++.+|+.+.+.|.+||++|+++|+|+|++|++|+||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 35789999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhcCCEEEEEEeeeCCccccccCCChhhhHHhhhhh-ChhhHHHHHHHHHHhhhhcCCcccccchhhHHHhh
Q 043805 93 LVKILDCKKINGQIVIPVFYQVDPSNVRKQSGSFGEAFDEYEKN-FPNMVQKWRDALTQASNISGYHESRTFRNEAELVE 171 (555)
Q Consensus 93 l~~~~~~~~~~~~~v~pv~~~v~p~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~e~~~~~ 171 (555)
|.+++++.+.++++||||||+|+|++|++|.|.|+++|.++..+ ..+++++|+.||++++++.|+ ++ +.+|++.|+
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~-~~--~~~e~~~i~ 160 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGD-CS--GDDDSKLVD 160 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCE-EC--CSCHHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccce-ec--CCCHHHHHH
Confidence 99999999888999999999999999999999999999999887 447899999999999999999 65 367999999
Q ss_pred hhhhhhhccccc
Q 043805 172 NIVEDISEKLED 183 (555)
Q Consensus 172 ~i~~~v~~~l~~ 183 (555)
+|+.+|.++|..
T Consensus 161 ~Iv~~v~~~l~~ 172 (176)
T 3jrn_A 161 KIANEISNKKTI 172 (176)
T ss_dssp HHHHHHHTTCC-
T ss_pred HHHHHHHHHhcC
Confidence 999999999876
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5e-38 Score=336.43 Aligned_cols=299 Identities=15% Similarity=0.177 Sum_probs=221.7
Q ss_pred ccchhhHHHHHhhhccc-CCCeEEEEEEecCcchhHHHHHHHHH----hhhcCCCceEEEEechhhccccChHHHHHHHH
Q 043805 194 VGLNSRIEEMKSLMCLE-SHDVRIVGIWGMGGVGKTTIASVVFH----QISRDFQGKCFVADVREESNKMGVIHVRDEVI 268 (555)
Q Consensus 194 vGR~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 268 (555)
+||+.++++|.++|... ....++|+|+||||+||||||+++++ +++.+|+..+|+. ++.... .+...++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999999744 34579999999999999999999996 6788999999985 332211 35778888999
Q ss_pred HHHhCCcc--CC-CC-----CchhHHHHHHhccC-ceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhhhhhc
Q 043805 269 SRVLGENL--KI-GT-----PTIPQNIRKRLQRI-KVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRVLDKC 339 (555)
Q Consensus 269 ~~~~~~~~--~~-~~-----~~l~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~ 339 (555)
..++.... .. .. ..+...+++.+.++ ++||||||+|+ .+++ .+... +|++||||||+..++..+
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~~-----~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQE-----LRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHHH-----TTCEEEEEESBGGGGGGC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-ccccc-----CCCEEEEEcCCHHHHHHc
Confidence 88876532 11 11 22467888999996 99999999999 6655 33321 789999999999888776
Q ss_pred C-CCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHh-hccCC
Q 043805 340 G-VDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQKSKQQWEDKLHN-LKLIS 417 (555)
Q Consensus 340 ~-~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~~~~~~l~~-l~~~~ 417 (555)
+ ....++|++|+.+||++||.+.++.... .+...+++.+|+++|+|+||||+.+|+.++.+. .+|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc
Confidence 5 3367999999999999999999865432 356778899999999999999999999998764 233333322 11111
Q ss_pred C-----------ccHHHHHHHhHhcCCHhhHHHHhhhccccCccchhhhHhhhcC--------------CccHHHHHHHH
Q 043805 418 E-----------PSIYKVLKISYDELNSEEKEIFLDIACFFNGEYIDFVTRIQDD--------------PMSIRDRLNIL 472 (555)
Q Consensus 418 ~-----------~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~--------------~~~~~~~l~~L 472 (555)
. ..+...+..+|..|+++++.+|.+||+||+++..+ ..+|.+ ..++.+++++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 1 24555566666666666666666999999887666 122211 13445589999
Q ss_pred HhccceeEecc--CCEEEccHHHHHHHHHHHhhcC
Q 043805 473 IDKSLITISSY--GNRLRMHDLLQEMGQIIVRQES 505 (555)
Q Consensus 473 ~~~sLl~~~~~--~~~~~~H~lvr~~~~~~~~~~~ 505 (555)
+++||++.... ..+|+||++||+|+++++.++.
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999997642 3579999999999998776553
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-36 Score=354.71 Aligned_cols=307 Identities=21% Similarity=0.317 Sum_probs=241.1
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh---hhcCCCceEEEEechhhccccChH
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ---ISRDFQGKCFVADVREESNKMGVI 261 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 261 (555)
.+|+.+..||||++++++|.++|....++.++|+|+||||+||||||.+++++ ....|+..+||..+.... .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHH
Confidence 56777888999999999999999755567899999999999999999999986 355687777665554322 22334
Q ss_pred HHHHHHHHHHhCCcc-----CCCCCchhHHHHHHhccC--ceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchh
Q 043805 262 HVRDEVISRVLGENL-----KIGTPTIPQNIRKRLQRI--KVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKR 334 (555)
Q Consensus 262 ~~~~~ll~~~~~~~~-----~~~~~~l~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 334 (555)
..+..++..+..... ....+.+...++..+.++ ++||||||+|+ ...+..+ +++++||||||++.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHH
Confidence 445556666554332 113345566677777766 99999999998 6655543 47899999999998
Q ss_pred hhhh-cCCCeEEEeec-CChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHh
Q 043805 335 VLDK-CGVDNIFEVKG-LQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQKSKQQWEDKLHN 412 (555)
Q Consensus 335 ~~~~-~~~~~~~~l~~-L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~~~~~~l~~ 412 (555)
++.. ......+++++ |+.+|+++||...++.. .+..++.+.+|+++|+|+||||+++|++|+.++ ..|...++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 7743 34556789996 99999999999887432 233345689999999999999999999998765 467777777
Q ss_pred hccCC-----------CccHHHHHHHhHhcCCHhhHHHHhhhccccCc--cchhhhHhhhcCC-ccHHHHHHHHHhccce
Q 043805 413 LKLIS-----------EPSIYKVLKISYDELNSEEKEIFLDIACFFNG--EYIDFVTRIQDDP-MSIRDRLNILIDKSLI 478 (555)
Q Consensus 413 l~~~~-----------~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl 478 (555)
+.... ...+..+|..||+.|+++++.||++||+|+++ ++.+.+..+|..+ ..+++.|++|+++|||
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 65432 13589999999999999999999999999986 5677888999877 7889999999999999
Q ss_pred eEeccCC--EEEccHHHHHHHHHHHhhc
Q 043805 479 TISSYGN--RLRMHDLLQEMGQIIVRQE 504 (555)
Q Consensus 479 ~~~~~~~--~~~~H~lvr~~~~~~~~~~ 504 (555)
+...+++ +|+||+++|+|+++++.++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9876333 5999999999999987655
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=318.38 Aligned_cols=301 Identities=22% Similarity=0.319 Sum_probs=227.0
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh---hcCCCc-eEEEEechhhccccCh
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI---SRDFQG-KCFVADVREESNKMGV 260 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~-~~~~~~~~~~~~~~~~ 260 (555)
..|+.+..||||+.++++|.++|....++.++|+|+|+||+||||||.+++++. +..|+. ++|+. +.... ...+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hHHH
Confidence 566778899999999999999997555568999999999999999999999764 667864 55554 43321 1222
Q ss_pred HHHHHHHHHHHhCCcc-----CCCCCchhHHHHHHhcc--CceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 261 IHVRDEVISRVLGENL-----KIGTPTIPQNIRKRLQR--IKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~-----~~~~~~l~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
...+..++..+..... ......+...+...+.+ +++||||||+|+ ...+..+ +++++||||||+.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHHHh-------cCCCeEEEECCCc
Confidence 3333334444432111 11223455566677766 789999999998 6655543 4789999999998
Q ss_pred hhhhhcCCCeEEEee---cCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHH
Q 043805 334 RVLDKCGVDNIFEVK---GLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQKSKQQWEDKL 410 (555)
Q Consensus 334 ~~~~~~~~~~~~~l~---~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~~~~~~l 410 (555)
.+..... ...+++. +|+.+|+.+||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|...+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 7765543 3456664 899999999999988531 222245688999999999999999999998653 3677777
Q ss_pred HhhccCC-----------CccHHHHHHHhHhcCCHhhHHHHhhhccccCc--cchhhhHhhhcCC-ccHHHHHHHHHhcc
Q 043805 411 HNLKLIS-----------EPSIYKVLKISYDELNSEEKEIFLDIACFFNG--EYIDFVTRIQDDP-MSIRDRLNILIDKS 476 (555)
Q Consensus 411 ~~l~~~~-----------~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~-~~~~~~l~~L~~~s 476 (555)
+.+.... ..++..++..||+.|+++++.||.++|+|+.+ ++.+.+..+|+.+ .++...++.|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKS 422 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCc
Confidence 7665322 24689999999999999999999999999875 6667888888876 67889999999999
Q ss_pred ceeEeccC--CEEEccHHHHHHHHHH
Q 043805 477 LITISSYG--NRLRMHDLLQEMGQII 500 (555)
Q Consensus 477 Ll~~~~~~--~~~~~H~lvr~~~~~~ 500 (555)
||....++ .+|+||+++|+|+++.
T Consensus 423 Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 423 LLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp SSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99976533 3799999999999988
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.7e-34 Score=314.05 Aligned_cols=278 Identities=17% Similarity=0.186 Sum_probs=207.1
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHH--hhhcCCCceEEEEechhhccccChHHHHHHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFH--QISRDFQGKCFVADVREESNKMGVIHVRDEVI 268 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 268 (555)
...|||+.++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+..++|.+++. ......++..++
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~---~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC---SSSHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC---CCCHHHHHHHHH
Confidence 34599999999999998742 3478999999999999999999996 46788997544444433 333444444444
Q ss_pred HHHhCCc---c-CC--------CCCchhHHHHHHh---ccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 269 SRVLGEN---L-KI--------GTPTIPQNIRKRL---QRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 269 ~~~~~~~---~-~~--------~~~~l~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
..+.... . .. ..+.+...+++.+ .++++||||||+|+ .+.++.+. +|++||||||+.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccCh
Confidence 4322111 0 00 1122344566655 57999999999999 78887752 689999999998
Q ss_pred hhhhhcCCCeEEEee------cCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCC--CHHH
Q 043805 334 RVLDKCGVDNIFEVK------GLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQK--SKQQ 405 (555)
Q Consensus 334 ~~~~~~~~~~~~~l~------~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~~ 405 (555)
.++..+.....+.|+ +|+.+||++||++.. +.. . .++..+ .|+|+||||+++|+.|+.+ +...
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 876533222345666 899999999999985 222 1 122333 3999999999999999876 5677
Q ss_pred HHHHHHhhccCCCccHHHHHHHhHhcCCHhh-HHHHhhhccccCc--cchhhhHhhhcCC--ccHHHHHHHHHhccceeE
Q 043805 406 WEDKLHNLKLISEPSIYKVLKISYDELNSEE-KEIFLDIACFFNG--EYIDFVTRIQDDP--MSIRDRLNILIDKSLITI 480 (555)
Q Consensus 406 ~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~-~~~l~~la~f~~~--~~~~~l~~~~~~~--~~~~~~l~~L~~~sLl~~ 480 (555)
|... ....+..+|..||+.|++++ |.||+++|+|+.+ ++.+.+..+|... .++...|++|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 7542 34679999999999999999 9999999999986 4556788888875 368889999999999998
Q ss_pred eccCCEEEccHHHHHH
Q 043805 481 SSYGNRLRMHDLLQEM 496 (555)
Q Consensus 481 ~~~~~~~~~H~lvr~~ 496 (555)
.+..++|+||+|++++
T Consensus 420 d~~~~rYrMHDLllEL 435 (1221)
T 1vt4_I 420 QPKESTISIPSIYLEL 435 (1221)
T ss_dssp CSSSSEEBCCCHHHHH
T ss_pred eCCCCEEEehHHHHHH
Confidence 7546789999999873
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=6.3e-30 Score=225.34 Aligned_cols=120 Identities=22% Similarity=0.395 Sum_probs=111.9
Q ss_pred CCCCcccEEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhHHH
Q 043805 13 TAQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCLNE 92 (555)
Q Consensus 13 ~~~~~~dvFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~E 92 (555)
.+.++|||||||+++| +..|+.+|+..|+++|+++|+|.+++.+|+.|.+.|.++|++|+++|+|+|++|++|.||+.|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4679999999999999 677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhcCCEEEEEEeeeCCccccccCCChhhhHHhh
Q 043805 93 LVKILDCKKINGQIVIPVFYQVDPSNVRKQSGSFGEAFDEY 133 (555)
Q Consensus 93 l~~~~~~~~~~~~~v~pv~~~v~p~~v~~~~~~~~~~~~~~ 133 (555)
|..++++...++.+||||||+++|++|+++.|.|++++...
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 99999987777789999999999999999999998877654
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=3.1e-26 Score=198.37 Aligned_cols=107 Identities=15% Similarity=0.313 Sum_probs=81.1
Q ss_pred CCCCCCcccEEEcCcccccccchHHHHHHHHHh--cCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchh
Q 043805 11 GLTAQSKYEVFLSFRGEDTRNGFTSHLAAALHR--KQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKW 88 (555)
Q Consensus 11 ~~~~~~~~dvFiSy~~~D~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~ 88 (555)
|....++|||||||+++|. .|+.+|.+.|++ .|+++|+|++++.||+.+.++|.+||++|+++|+|+|++|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 3567889999999999998 899999999998 599999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHHhcCCEEEEEEeeeCCccc
Q 043805 89 CLNELVKILDCKKINGQIVIPVFYQVDPSNV 119 (555)
Q Consensus 89 ~~~El~~~~~~~~~~~~~v~pv~~~v~p~~v 119 (555)
|..|+..|+.+...+..+||||++++++.++
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 9999999998774444478899988875444
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.87 E-value=2.8e-23 Score=182.94 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=93.0
Q ss_pred CCCCCcccEEEcCcccccccchHHHHHHHHHhc--CCceeeeccccCCCCcchHHHHHHHh-hcceEEEEeccCCccchh
Q 043805 12 LTAQSKYEVFLSFRGEDTRNGFTSHLAAALHRK--QIQFFIDDEELKKGDEISPTILKAIE-TSDISIIIFSKDYAASKW 88 (555)
Q Consensus 12 ~~~~~~~dvFiSy~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~~~~s~~ 88 (555)
....+.|||||||+++|. .||.+|.+.|+++ |+++|+|++++.||+.+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 445789999999999997 8999999999985 69999999999999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHhH-HhcCCEEEEEEeeeCC
Q 043805 89 CLNELVKILDCK-KINGQIVIPVFYQVDP 116 (555)
Q Consensus 89 ~~~El~~~~~~~-~~~~~~v~pv~~~v~p 116 (555)
|..|+..|+.+. ..++.+||||+|+..+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999999875 3344689999997654
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.86 E-value=2e-20 Score=188.83 Aligned_cols=290 Identities=14% Similarity=0.118 Sum_probs=179.4
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhc---cccChH
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREES---NKMGVI 261 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~~ 261 (555)
.++..+..|+||+.+++.|.+++..+ +.++|+|++|+|||+|+.++++... .+|+. ..... ......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHH
Confidence 45566788999999999999988642 6899999999999999999998752 45554 22211 011233
Q ss_pred HHHHHHHHHHhC----------------CccC---CCCCchhHHHHHHhcc-CceEEEEeCCCCcH--------HHHHHH
Q 043805 262 HVRDEVISRVLG----------------ENLK---IGTPTIPQNIRKRLQR-IKVLIVLDDVHDGF--------TQLENL 313 (555)
Q Consensus 262 ~~~~~ll~~~~~----------------~~~~---~~~~~l~~~l~~~l~~-~~~LlVlDdv~~~~--------~~~~~l 313 (555)
.++..+...+.. .... .....+...+.+.... ++++|||||++... ..+..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 333433332211 0000 1112233334343332 49999999996511 122222
Q ss_pred hcCCCCCCCCceEEEEeCchhhhhh-----------c-CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 043805 314 VGGSDKFSPGSRIIITTRDKRVLDK-----------C-GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVV 381 (555)
Q Consensus 314 ~~~~~~~~~~~~iliTsR~~~~~~~-----------~-~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~ 381 (555)
...... .+++++|+|++....... . .....+++.+|+.+|+.+++...+...... ...+.+..++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 211111 147789999887543221 1 123479999999999999998765222211 1245678999
Q ss_pred HHhcCCchHHHHHHhhhcC-CCHHHHHHHHHhhccCCCccHHHHHHHhHhcC---CHhhHHHHhhhccccCccchhhhHh
Q 043805 382 CYADGNPLALEVLGSSLHQ-KSKQQWEDKLHNLKLISEPSIYKVLKISYDEL---NSEEKEIFLDIACFFNGEYIDFVTR 457 (555)
Q Consensus 382 ~~~~G~PLal~~~a~~l~~-~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L---~~~~~~~l~~la~f~~~~~~~~l~~ 457 (555)
..|+|+|+++..++..+.. .+...+.. .+. ..+...+...+..+ ++..+.++..+|+ + ..+...+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHH---HHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHHHH
Confidence 9999999999999876432 22222211 110 11222333334444 7889999999998 3 455566655
Q ss_pred hh-----cCC-ccHHHHHHHHHhccceeEeccCCEEEc-cHHHHHHHH
Q 043805 458 IQ-----DDP-MSIRDRLNILIDKSLITISSYGNRLRM-HDLLQEMGQ 498 (555)
Q Consensus 458 ~~-----~~~-~~~~~~l~~L~~~sLl~~~~~~~~~~~-H~lvr~~~~ 498 (555)
.+ +.. ..+..+++.|.+.+||... ++.|++ |++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 44 333 5677899999999999887 567777 999998865
No 11
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.86 E-value=7.7e-23 Score=182.89 Aligned_cols=102 Identities=22% Similarity=0.388 Sum_probs=89.1
Q ss_pred CCCCCcccEEEcCcccccccchHHH-HHHHHHh--cCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchh
Q 043805 12 LTAQSKYEVFLSFRGEDTRNGFTSH-LAAALHR--KQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKW 88 (555)
Q Consensus 12 ~~~~~~~dvFiSy~~~D~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~ 88 (555)
...+++|||||||+++|. .||.+ |.+.|++ +|+++|+|++++.||+.+.++|.+||++|+++|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 457789999999999998 89986 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhH-HhcCCEEEEEEeeeC
Q 043805 89 CLNELVKILDCK-KINGQIVIPVFYQVD 115 (555)
Q Consensus 89 ~~~El~~~~~~~-~~~~~~v~pv~~~v~ 115 (555)
|..|+..|+.+. ..++.+||||+|+..
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i 135 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPI 135 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 999999998654 445678999998744
No 12
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.86 E-value=3.4e-23 Score=180.61 Aligned_cols=99 Identities=18% Similarity=0.339 Sum_probs=90.7
Q ss_pred CCCcccEEEcCcccccccchHHH-HHHHHHhc--CCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhH
Q 043805 14 AQSKYEVFLSFRGEDTRNGFTSH-LAAALHRK--QIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCL 90 (555)
Q Consensus 14 ~~~~~dvFiSy~~~D~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~ 90 (555)
.++.|||||||+++|. .|+.+ |.+.|+++ |+++|+|++++.||+.+.+.|.+||++|+++|+|+||+|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4689999999999998 89997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhH-HhcCCEEEEEEeee
Q 043805 91 NELVKILDCK-KINGQIVIPVFYQV 114 (555)
Q Consensus 91 ~El~~~~~~~-~~~~~~v~pv~~~v 114 (555)
.|+..|+.+. ..++.+||||+++.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999988543 45667899999863
No 13
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=171.07 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=88.2
Q ss_pred CcccEEEcCccccc---------ccchHHHHH-HHHH-hcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCc
Q 043805 16 SKYEVFLSFRGEDT---------RNGFTSHLA-AALH-RKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYA 84 (555)
Q Consensus 16 ~~~dvFiSy~~~D~---------~~~~~~~l~-~~L~-~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~ 84 (555)
+.|||||||+++|. +..||.+|. +.|+ +.|+++|+|++|+.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 245776645 5799 699999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhH-HhcCCEEEEEEeeeCC
Q 043805 85 -ASKWCLNELVKILDCK-KINGQIVIPVFYQVDP 116 (555)
Q Consensus 85 -~s~~~~~El~~~~~~~-~~~~~~v~pv~~~v~p 116 (555)
.|.||..|+..|+.+. ..++.+||||+++..+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999877 5566899999976443
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.84 E-value=2.4e-19 Score=181.34 Aligned_cols=283 Identities=17% Similarity=0.158 Sum_probs=172.8
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhh-----ccccC
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREE-----SNKMG 259 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-----~~~~~ 259 (555)
.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+.++++.... ..+|+. .... .....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLD-LRKFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEE-GGGGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEE-chhhccccCCCHHH
Confidence 445567889999999999999 753 58999999999999999999987653 245654 2221 11111
Q ss_pred hHHHHHHHHHH----------HhCCc-----cCC--C------CCchhHHHHHHhcc---CceEEEEeCCCCcH-----H
Q 043805 260 VIHVRDEVISR----------VLGEN-----LKI--G------TPTIPQNIRKRLQR---IKVLIVLDDVHDGF-----T 308 (555)
Q Consensus 260 ~~~~~~~ll~~----------~~~~~-----~~~--~------~~~l~~~l~~~l~~---~~~LlVlDdv~~~~-----~ 308 (555)
+...+...+.. ..... ... . .......+.+.+.. ++++|||||++... +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 22222222221 11100 000 0 11222333333332 48999999995411 1
Q ss_pred ---HHHHHhcCCCCCCCCceEEEEeCchhhhhh----------c-CC-CeEEEeecCChHHHHHHHHHHhhccCCCChhH
Q 043805 309 ---QLENLVGGSDKFSPGSRIIITTRDKRVLDK----------C-GV-DNIFEVKGLQHSKALELFCRKAFRQNNRSHDL 373 (555)
Q Consensus 309 ---~~~~l~~~~~~~~~~~~iliTsR~~~~~~~----------~-~~-~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~ 373 (555)
.+..+... .+++++|+|++....... . +. ...+.|.+|+.+|+.+++...+.........
T Consensus 157 ~~~~l~~~~~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~- 231 (357)
T 2fna_A 157 LLPALAYAYDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD- 231 (357)
T ss_dssp CHHHHHHHHHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-
T ss_pred HHHHHHHHHHc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-
Confidence 12222221 146789999987643221 1 11 3679999999999999998865321222221
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhhhcC-CCHHHHHHHHHhhccCCCccHHHHHHHhHh-------cCCHhhHHHHhhhcc
Q 043805 374 LELSQEVVCYADGNPLALEVLGSSLHQ-KSKQQWEDKLHNLKLISEPSIYKVLKISYD-------ELNSEEKEIFLDIAC 445 (555)
Q Consensus 374 ~~~~~~i~~~~~G~PLal~~~a~~l~~-~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~-------~L~~~~~~~l~~la~ 445 (555)
...|+..|+|+|+++..++..+.. .+...|... +. +.+...+...+. .|++..+.++..+|+
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ---TL----EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH---HH----HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHH---HH----HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 278999999999999999877642 223333211 10 111222222222 678899999999998
Q ss_pred ccCccchhhhHh----hhc--CC-ccHHHHHHHHHhccceeEeccCCEEEc-cHHHHHHH
Q 043805 446 FFNGEYIDFVTR----IQD--DP-MSIRDRLNILIDKSLITISSYGNRLRM-HDLLQEMG 497 (555)
Q Consensus 446 f~~~~~~~~l~~----~~~--~~-~~~~~~l~~L~~~sLl~~~~~~~~~~~-H~lvr~~~ 497 (555)
+ . +...+.. ..+ .. ..+..+++.|.+.+||... ++.|++ |++++++.
T Consensus 302 -g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~--~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 -C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE--GEKYCPSEPLISLAF 356 (357)
T ss_dssp -C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES--SSCEEESSHHHHHHT
T ss_pred -C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec--CCEEEecCHHHHHhh
Confidence 3 3 5566553 333 22 5677899999999999876 466776 99999875
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.75 E-value=4.4e-17 Score=168.18 Aligned_cols=285 Identities=12% Similarity=0.039 Sum_probs=171.6
Q ss_pred CCCCCcccchhhHHHHHhhh-cc--cC--CCeEEEEE--EecCcchhHHHHHHHHHhhhcC-----CC-ceEEEEechhh
Q 043805 188 TDLDSFVGLNSRIEEMKSLM-CL--ES--HDVRIVGI--WGMGGVGKTTIASVVFHQISRD-----FQ-GKCFVADVREE 254 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L-~~--~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~ 254 (555)
..+..|+||+.+++.|.+.+ .. .. ...+.+.| +|++|+|||+|++++++..... +. ..+|+.+
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA---- 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG----
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC----
Confidence 34578999999999999988 42 11 23567778 9999999999999999877542 12 2344442
Q ss_pred ccccChHHHHHHHHHHHhCCccC--CCCCchhHHHHHHhc--cCceEEEEeCCCCc-------HHHHHHHhcCCCCC---
Q 043805 255 SNKMGVIHVRDEVISRVLGENLK--IGTPTIPQNIRKRLQ--RIKVLIVLDDVHDG-------FTQLENLVGGSDKF--- 320 (555)
Q Consensus 255 ~~~~~~~~~~~~ll~~~~~~~~~--~~~~~l~~~l~~~l~--~~~~LlVlDdv~~~-------~~~~~~l~~~~~~~--- 320 (555)
........++..++..+...... .+...+...+.+.+. +++++|||||++.. .+.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 22345566777777777543221 122234455555554 67899999999651 23344333222111
Q ss_pred C--CCceEEEEeCchhhhhh---------cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhc----
Q 043805 321 S--PGSRIIITTRDKRVLDK---------CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYAD---- 385 (555)
Q Consensus 321 ~--~~~~iliTsR~~~~~~~---------~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~---- 385 (555)
+ ..+.+|+||+...+... ......+.+++|+.+++.++|..++...........+.+..+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 45668888875442211 11223499999999999999987653211111123467888999999
Q ss_pred --CCchHHHHHHhhhc------C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhcccc----Ccc
Q 043805 386 --GNPLALEVLGSSLH------Q---KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFF----NGE 450 (555)
Q Consensus 386 --G~PLal~~~a~~l~------~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~----~~~ 450 (555)
|+|..+..+..... + .+...+......... ...+..++..|++..+.+|..++++. ..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99977666554321 1 122333332222110 23345567889999999999998753 223
Q ss_pred chhh-------hH-hhhcCC----ccHHHHHHHHHhccceeEec
Q 043805 451 YIDF-------VT-RIQDDP----MSIRDRLNILIDKSLITISS 482 (555)
Q Consensus 451 ~~~~-------l~-~~~~~~----~~~~~~l~~L~~~sLl~~~~ 482 (555)
+... +. ...+.. ..+..+++.|.+.|||....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 3322 22 232221 34668899999999998753
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=2.4e-14 Score=146.23 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=174.1
Q ss_pred CCCcccchhhHHHHHhhhcc--cCCCeEEEEEEecCcchhHHHHHHHHHhhhcC--------CCceEEEEechhhcccc-
Q 043805 190 LDSFVGLNSRIEEMKSLMCL--ESHDVRIVGIWGMGGVGKTTIASVVFHQISRD--------FQGKCFVADVREESNKM- 258 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~- 258 (555)
++.|+||+.+++.+.+++.. .....+.+.|+|++|+|||+||+.+++.+... ....+++.+ ....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC----REVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH----HHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC----ccCCC
Confidence 37899999999999988763 23346689999999999999999999876443 223344442 2222
Q ss_pred ChHHHHHHHHHHHhCCcc---CCCCCchhHHHHHHhccCceEEEEeCCCCc-----HHH-HHHHhcCCCCCCCCceEEEE
Q 043805 259 GVIHVRDEVISRVLGENL---KIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-----FTQ-LENLVGGSDKFSPGSRIIIT 329 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~---~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-----~~~-~~~l~~~~~~~~~~~~iliT 329 (555)
....++..++..+.+... ......+...+.+.+..++.+|||||++.. ... +..+.... .++.+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 455666677776643322 112344556666777776669999999651 122 34444433 67788888
Q ss_pred eCchhhhh----h--cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhc---CCchHH-HHHHhhh-
Q 043805 330 TRDKRVLD----K--CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYAD---GNPLAL-EVLGSSL- 398 (555)
Q Consensus 330 sR~~~~~~----~--~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal-~~~a~~l- 398 (555)
|+...... . ......+.+++++.++..+++...+...........+..+.+++.++ |+|..+ ..+-...
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 88653211 1 01224899999999999999998863211111122345677888888 998743 3332221
Q ss_pred -c----CCCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhcc-ccCc-c--chhhhHhhhc-CC---ccH
Q 043805 399 -H----QKSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIAC-FFNG-E--YIDFVTRIQD-DP---MSI 465 (555)
Q Consensus 399 -~----~~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~-f~~~-~--~~~~l~~~~~-~~---~~~ 465 (555)
. ..+...+...+.... ...+..+++.|++.++.+|..++. +..+ . ....++...+ .+ ..+
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1 134566655555432 245677789999999999888887 2101 1 1122222222 11 456
Q ss_pred HHHHHHHHhccceeEec
Q 043805 466 RDRLNILIDKSLITISS 482 (555)
Q Consensus 466 ~~~l~~L~~~sLl~~~~ 482 (555)
..++..|.+.||+....
T Consensus 324 ~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 324 SDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhCCCEEEEe
Confidence 78899999999998753
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=1e-14 Score=148.90 Aligned_cols=283 Identities=12% Similarity=0.077 Sum_probs=168.1
Q ss_pred CCCCCcccchhhHHHHHhhhccc--CCCeEEEEEEecCcchhHHHHHHHHHhhhcCC---CceEEEEechhhccccChHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLE--SHDVRIVGIWGMGGVGKTTIASVVFHQISRDF---QGKCFVADVREESNKMGVIH 262 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~ 262 (555)
..++.|+||+.+++.|.+++... ....+.+.|+|++|+|||+|++.++..+...+ ...+|+.+ ........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~----~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT----RQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH----HHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC----CCCCCHHH
Confidence 44578999999999999988742 34467899999999999999999998876543 23444442 12223334
Q ss_pred HHHHHHHHHhCCccC--CCCCchhHHHHHHhc--cCceEEEEeCCCCc-----HHHHHHHhcCCCC-CCCCceEEEEeCc
Q 043805 263 VRDEVISRVLGENLK--IGTPTIPQNIRKRLQ--RIKVLIVLDDVHDG-----FTQLENLVGGSDK-FSPGSRIIITTRD 332 (555)
Q Consensus 263 ~~~~ll~~~~~~~~~--~~~~~l~~~l~~~l~--~~~~LlVlDdv~~~-----~~~~~~l~~~~~~-~~~~~~iliTsR~ 332 (555)
++..++..+...... .....+...+.+.+. +++.+||||+++.. ...+..+...... ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 444444433221111 112233444445554 34899999999541 2233333322211 1246677888876
Q ss_pred hhhhhhcC-------CCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhc---CCchHHHHHHhhhc---
Q 043805 333 KRVLDKCG-------VDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYAD---GNPLALEVLGSSLH--- 399 (555)
Q Consensus 333 ~~~~~~~~-------~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~a~~l~--- 399 (555)
........ ....+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 53322111 125899999999999999998753211112223456777888888 99985544333221
Q ss_pred ---C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhccccC----ccch-------hhhHhhhcC-
Q 043805 400 ---Q---KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFFN----GEYI-------DFVTRIQDD- 461 (555)
Q Consensus 400 ---~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~----~~~~-------~~l~~~~~~- 461 (555)
+ -+...+...+... ....+..++..|++..+.+|..++.+.. .+.. ..+...++.
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 2344444444332 1345677788999999998888885321 2333 222332322
Q ss_pred C---ccHHHHHHHHHhccceeEe
Q 043805 462 P---MSIRDRLNILIDKSLITIS 481 (555)
Q Consensus 462 ~---~~~~~~l~~L~~~sLl~~~ 481 (555)
+ ..+..+++.|...|+|...
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 3467889999999999875
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=6.1e-14 Score=143.36 Aligned_cols=305 Identities=11% Similarity=0.091 Sum_probs=182.8
Q ss_pred CCCCcccchhhHHHHHhhhccc--CCC--eEEEEEEecCcchhHHHHHHHHHhhhcCC-CceEEEEechhhccccChHHH
Q 043805 189 DLDSFVGLNSRIEEMKSLMCLE--SHD--VRIVGIWGMGGVGKTTIASVVFHQISRDF-QGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~~--~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 263 (555)
.++.++||+.+++.|.+++... ... .+.+.|+|++|+|||+|++.++....... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 3478999999999999988631 122 34899999999999999999998876542 2344444 1223344566
Q ss_pred HHHHHHHHhCCccC--CCCCchhHHHHHHhc--cCceEEEEeCCCC-cHHHHHHHhcCCCCCC----CCceEEEEeCchh
Q 043805 264 RDEVISRVLGENLK--IGTPTIPQNIRKRLQ--RIKVLIVLDDVHD-GFTQLENLVGGSDKFS----PGSRIIITTRDKR 334 (555)
Q Consensus 264 ~~~ll~~~~~~~~~--~~~~~l~~~l~~~l~--~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~----~~~~iliTsR~~~ 334 (555)
+..++..+...... .....+...+...+. +++.+||||+++. +...+..+...+.... .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 66666665432221 122233444444443 5688999999965 2344555544443211 3667888877653
Q ss_pred hhhhcC-------CCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHh---------cCCchHHHHHHhhh
Q 043805 335 VLDKCG-------VDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYA---------DGNPLALEVLGSSL 398 (555)
Q Consensus 335 ~~~~~~-------~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~a~~l 398 (555)
...... ....+.+++++.++..+++...+...........+..+.+++.+ +|+|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 222111 12369999999999999998886421111122356778899999 79987665554332
Q ss_pred c------C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhcccc---C--ccchhhhHhh------
Q 043805 399 H------Q---KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFF---N--GEYIDFVTRI------ 458 (555)
Q Consensus 399 ~------~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~---~--~~~~~~l~~~------ 458 (555)
. + .+............. . .+...+..|++..+.+|..++.+. . .+....+...
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~---~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLF---G----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSC---C----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhh---h----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 1 123333333333221 1 123446789999999888888654 1 3333333221
Q ss_pred -hc-C--C-ccHHHHHHHHHhccceeEecc----C--CE---EEc----cHHHHHHHHHHHhhc
Q 043805 459 -QD-D--P-MSIRDRLNILIDKSLITISSY----G--NR---LRM----HDLLQEMGQIIVRQE 504 (555)
Q Consensus 459 -~~-~--~-~~~~~~l~~L~~~sLl~~~~~----~--~~---~~~----H~lvr~~~~~~~~~~ 504 (555)
.+ . . ......+..|...|||..... + ++ +++ |++++.+...++.++
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 11 1 1 456788999999999998542 1 22 333 566776666666543
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.57 E-value=1.1e-13 Score=141.14 Aligned_cols=282 Identities=11% Similarity=0.074 Sum_probs=168.7
Q ss_pred CCCCcccchhhHHHHHhhhccc--CCCeEEEEEEecCcchhHHHHHHHHHhhhcC------CCceEEEEechhhccccCh
Q 043805 189 DLDSFVGLNSRIEEMKSLMCLE--SHDVRIVGIWGMGGVGKTTIASVVFHQISRD------FQGKCFVADVREESNKMGV 260 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~ 260 (555)
.++.|+||+.+++.+..++... ....+.+.|+|++|+|||+|++.+++..... ....+++. .......
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4478999999999999988532 3446789999999999999999999877443 12234443 2233345
Q ss_pred HHHHHHHHHHHhCCccCC--CCCchhHHHHHHhc--cCceEEEEeCCCCcH------HHHHHHhcCCCCC--CCCceEEE
Q 043805 261 IHVRDEVISRVLGENLKI--GTPTIPQNIRKRLQ--RIKVLIVLDDVHDGF------TQLENLVGGSDKF--SPGSRIII 328 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~--~~~~l~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~l~~~~~~~--~~~~~ili 328 (555)
..++..++..+....... ....+...+.+.+. +++.+||||+++... ..+..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 566677777764432211 12233445555553 458899999997611 2233333322111 34667777
Q ss_pred EeCchhhhhh-----cC--CCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhc---CCchHHHHHHhhh
Q 043805 329 TTRDKRVLDK-----CG--VDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYAD---GNPLALEVLGSSL 398 (555)
Q Consensus 329 TsR~~~~~~~-----~~--~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~a~~l 398 (555)
||+....... .. ....+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+....
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7765522111 11 125789999999999999998763211111122345678888888 9995443332221
Q ss_pred c------C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhccccCc---cchhhh----Hhh---h
Q 043805 399 H------Q---KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFFNG---EYIDFV----TRI---Q 459 (555)
Q Consensus 399 ~------~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~---~~~~~l----~~~---~ 459 (555)
. + -+...+...+.... ...+..++..|++.++.++..++.+..+ +....+ ..+ .
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 1 1 23455555444331 3356677899999999988888744322 222211 111 1
Q ss_pred cC-C---ccHHHHHHHHHhccceeEe
Q 043805 460 DD-P---MSIRDRLNILIDKSLITIS 481 (555)
Q Consensus 460 ~~-~---~~~~~~l~~L~~~sLl~~~ 481 (555)
+. + ..+..+++.|...|+++..
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 326 GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 11 1 3567889999999999974
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=171.72 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=93.1
Q ss_pred CCCCCcccEEEcCcccccccchH-HHHHHHHHh-----cCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCcc
Q 043805 12 LTAQSKYEVFLSFRGEDTRNGFT-SHLAAALHR-----KQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAA 85 (555)
Q Consensus 12 ~~~~~~~dvFiSy~~~D~~~~~~-~~l~~~L~~-----~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~ 85 (555)
....++||+||||+++|. .|| ++|.+.||+ .|+++|++++|+.||+.+.+.|.+||++|+++|+|+|++|+.
T Consensus 665 ~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~ 742 (844)
T 3j0a_A 665 EPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR 742 (844)
T ss_dssp SSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred cccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc
Confidence 346789999999999998 898 779999985 589999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhH-HhcCCEEEEEEeeeCC
Q 043805 86 SKWCLNELVKILDCK-KINGQIVIPVFYQVDP 116 (555)
Q Consensus 86 s~~~~~El~~~~~~~-~~~~~~v~pv~~~v~p 116 (555)
|.||..|+..|+.+. .+++++||||+++..|
T Consensus 743 s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 743 DGWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp HTSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 999999999988766 4566789999987544
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.43 E-value=2.6e-12 Score=121.92 Aligned_cols=189 Identities=14% Similarity=0.095 Sum_probs=118.7
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCce---------------------
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGK--------------------- 245 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~--------------------- 245 (555)
|.....|+||+.+++.|..++..+. ..+.+.|+|++|+|||+|++.+++.+...+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 3445679999999999999986432 235789999999999999999998765432110
Q ss_pred EEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCc
Q 043805 246 CFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGS 324 (555)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~ 324 (555)
..+. ............++..+.. ....+++.+|||||++. ....+..+...+.....++
T Consensus 98 ~~~~-----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~ 157 (250)
T 1njg_A 98 IEID-----AASRTKVEDTRDLLDNVQY---------------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 157 (250)
T ss_dssp EEEE-----TTCGGGHHHHHHHHHSCCC---------------SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTE
T ss_pred EEec-----CcccccHHHHHHHHHHhhh---------------chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCce
Confidence 1100 0000001111111111000 00124678999999954 2344555554443334677
Q ss_pred eEEEEeCchhhhh--hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 325 RIIITTRDKRVLD--KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 325 ~iliTsR~~~~~~--~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
.+|+||+...... .......+++++++.++..+++...+...... ..++..+.|++.++|+|..+..+...+
T Consensus 158 ~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 158 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888887643211 12235689999999999999999887433222 224567899999999999988776544
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.34 E-value=2.1e-11 Score=113.88 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=115.6
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEEechhhccccChHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVADVREESNKMGVIHVRD 265 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~ 265 (555)
|.....++||+..++.+.+++.... .+.+.|+|++|+|||+||+.+++.+... +...+..... ...... ....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SDERGI-DVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TCTTCH-HHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---ccccCh-HHHH
Confidence 4455679999999999999987432 2348999999999999999999876433 2222222111 111111 1122
Q ss_pred HHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCchhhh-h-hcCCC
Q 043805 266 EVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDKRVL-D-KCGVD 342 (555)
Q Consensus 266 ~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~-~~~~~ 342 (555)
..+....... .....++.+|||||++.. ......+...+.....++.+|+||+..... . .....
T Consensus 87 ~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 87 HKIKEFARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHHHTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 2222211110 011256789999999651 233344433333234667888888765321 1 11234
Q ss_pred eEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 343 NIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 343 ~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
..+++++++.++..+++...+...... ..++....+++.++|+|..+..+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 589999999999999999877432222 2245678899999999997655443
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=5e-11 Score=118.28 Aligned_cols=187 Identities=16% Similarity=0.195 Sum_probs=114.0
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC-Cc-eEEEEechhhccccChHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF-QG-KCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~~ 264 (555)
|.....++||+..++.|.+++..+. .+.+.|+|++|+|||++|+.+++.+.... .. .+.+. .....+ ....
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~-~~~i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRG-IDVV 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCS-HHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccC-hHHH
Confidence 3445679999999999999987432 22389999999999999999998764322 11 22222 111111 2222
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHh-ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchhh-hhh-cC
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRL-QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKRV-LDK-CG 340 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l-~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~~-~~~-~~ 340 (555)
+.++..+.... ..+ .+++.++|+||++. .......+...+.....++.+|+||....- ... ..
T Consensus 90 ~~~~~~~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 90 RNQIKHFAQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp HTHHHHHHHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 22222221000 001 34578999999965 123344444333333366788888765422 111 23
Q ss_pred CCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchH-HHHHH
Q 043805 341 VDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLA-LEVLG 395 (555)
Q Consensus 341 ~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~~a 395 (555)
....+++.+++.++..+++...+...... ..++.+..|++.++|+|.. +..+.
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45689999999999999999876432222 2245678899999999954 44443
No 24
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.17 E-value=1.8e-09 Score=107.14 Aligned_cols=265 Identities=13% Similarity=0.115 Sum_probs=154.3
Q ss_pred CCCCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCL---ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|...+.|+|++..++.+...+.. .......+.|+|++|+|||+||+.+++..... ..++. .... ....
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~-~~~~---~~~~-- 78 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS-GPAI---EKPG-- 78 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC-TTTC---CSHH--
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-cccc---CChH--
Confidence 34567899999999999887752 12234678899999999999999999876432 22222 1111 1111
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCC------------------CCCc
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKF------------------SPGS 324 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~------------------~~~~ 324 (555)
.+...+. .. ..++.+|+||+++.. ......+...+... .+..
T Consensus 79 --~l~~~l~----------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 79 --DLAAILA----------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp --HHHHHHT----------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred --HHHHHHH----------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1111110 00 135679999999652 22233332211100 0235
Q ss_pred eEEEEeCchhhh-hh-cC-CCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhcCC
Q 043805 325 RIIITTRDKRVL-DK-CG-VDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLHQK 401 (555)
Q Consensus 325 ~iliTsR~~~~~-~~-~~-~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~ 401 (555)
.+|.||...... .. .. ....+.+++++.+|..+++...+..... ....+....++..++|+|..+..+...+...
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 666666543211 11 11 2357999999999999999887743222 2234668899999999999887776554321
Q ss_pred ---------CHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhccc--cCccchhhhHhhhcCC-ccHHHHH
Q 043805 402 ---------SKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACF--FNGEYIDFVTRIQDDP-MSIRDRL 469 (555)
Q Consensus 402 ---------~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f--~~~~~~~~l~~~~~~~-~~~~~~l 469 (555)
+.......+..+ ......|++.++..+..+... +.++....++..++-. ..+...+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 122222222211 112345677777777665533 3346677777877765 5555656
Q ss_pred HH-HHhccceeEeccCCEEEccHHHHH
Q 043805 470 NI-LIDKSLITISSYGNRLRMHDLLQE 495 (555)
Q Consensus 470 ~~-L~~~sLl~~~~~~~~~~~H~lvr~ 495 (555)
.. +++.+++.... .+ ..+-+...+
T Consensus 286 ~~~~i~~~li~~~~-~g-~~~~~~~~~ 310 (324)
T 1hqc_A 286 EPYLIRQGLLKRTP-RG-RVPTELAYR 310 (324)
T ss_dssp HHHHHHTTSEEEET-TE-EEECHHHHH
T ss_pred hHHHHHhcchhcCC-cc-ceecHHHHH
Confidence 55 88999998764 33 344444333
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=3.6e-10 Score=112.31 Aligned_cols=190 Identities=17% Similarity=0.121 Sum_probs=114.5
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC-Cc-eEEEEechhhccccChHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF-QG-KCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~~ 264 (555)
|.....++|++..++.|.+++..+. .+.+.|+|++|+|||++|+.+++.+.... .. .+.+. ....... ...
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~----~~~ 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDERGI----NVI 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCHHHH----HTT
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccccCch----HHH
Confidence 3445679999999999999887442 23489999999999999999998764332 11 22222 1100000 111
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCchhhh-hh-cCC
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDKRVL-DK-CGV 341 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~~-~~~ 341 (555)
...+....... ....+++.++|+||++.. ......+...+.....++.+|+|+...... .. ...
T Consensus 94 ~~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 94 REKVKEFARTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHHHHSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 11111111000 011246789999999651 234444444333334677888888654321 11 112
Q ss_pred CeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhh
Q 043805 342 DNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSL 398 (555)
Q Consensus 342 ~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l 398 (555)
...+.+.+++.++..+++...+..... ...++..+.|++.++|+|..+..+...+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 357899999999999999887633222 2335667889999999998765544433
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.10 E-value=2.3e-09 Score=105.94 Aligned_cols=182 Identities=14% Similarity=0.151 Sum_probs=115.9
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CCc-eEEEEechhhccccChHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQG-KCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~~ 264 (555)
|.....++|++..++.|.+++..+. .+.+.|+|++|+|||++|..+++.+... +.. .+.+. .....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~--------- 80 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDER--------- 80 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTT---------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-Ccccc---------
Confidence 3445679999999999999987432 2338999999999999999999876322 111 12222 11100
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHh------ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchh-hh
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRL------QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKR-VL 336 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l------~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~-~~ 336 (555)
+...+...+.... .+++.++|+|+++. .......+...+.....++.+|+||.... +.
T Consensus 81 --------------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 81 --------------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp --------------CTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred --------------ChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 1111112121211 24578999999965 23445666666655556778888876543 11
Q ss_pred hh-cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 337 DK-CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 337 ~~-~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
.. ......+++.+++.++..+++...+...+. ...++....++..++|++..+.....
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 234568999999999999999887743222 22356678899999999986654433
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.03 E-value=3.9e-09 Score=106.91 Aligned_cols=196 Identities=13% Similarity=0.063 Sum_probs=115.5
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEV 267 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 267 (555)
.....++||+..++.|.+.+..+. ....+.|+|++|+|||++|+.+++.+....... . ...... .....+
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~-------~~~~~~-~~~~~~ 82 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-A-------TPCGVC-DNCREI 82 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-S-------SCCSSS-HHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-C-------CCCccc-HHHHHH
Confidence 345679999999999999886432 245788999999999999999998765332100 0 000000 000011
Q ss_pred HHHHh------CCccCCCCCchhHHHHHHh-----ccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043805 268 ISRVL------GENLKIGTPTIPQNIRKRL-----QRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKRV 335 (555)
Q Consensus 268 l~~~~------~~~~~~~~~~l~~~l~~~l-----~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~~ 335 (555)
..... ........+.+.. +.+.+ .+++.++|+||++. .......++..+.....++.+|++|....-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHH-HHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred hccCCCceEEecccccCCHHHHHH-HHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 00000 0000012222332 22222 24578999999964 234445554444333456777777764421
Q ss_pred -hh-hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 336 -LD-KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 336 -~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
.. .......+++.+++.++..+++...+...+.. ...+.+..|++.++|+|..+..+..
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 12345789999999999999998876332221 2245678899999999998776553
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.02 E-value=1.1e-08 Score=102.17 Aligned_cols=258 Identities=13% Similarity=0.145 Sum_probs=150.1
Q ss_pred CCCCCCcccchhhHHHHHhhhccc---CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLE---SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|...+.|+|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....| +.+. .... .. ...
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~---~~-~~~ 96 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI---EK-SGD 96 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC---CS-HHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc---cc-hhH
Confidence 345678999999999999888632 23345689999999999999999988764332 2222 1111 11 111
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCC------------------CCCCc
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDK------------------FSPGS 324 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~------------------~~~~~ 324 (555)
+...+. . ..++.+|+||+++.. ......+...+.. ..++.
T Consensus 97 ~~~~~~-------------------~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 97 LAAILT-------------------N--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp HHHHHH-------------------T--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred HHHHHH-------------------h--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111110 0 135679999999651 2222333221110 01235
Q ss_pred eEEEEeCchhhh-hh-c-CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhc--
Q 043805 325 RIIITTRDKRVL-DK-C-GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLH-- 399 (555)
Q Consensus 325 ~iliTsR~~~~~-~~-~-~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~-- 399 (555)
.+|.+|...... .. . .....+.+++++.++..+++...+.... .....+..+.+++.+.|+|-.+..+...+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 666666543211 11 1 2236899999999999999988773322 223356678888999999976665544321
Q ss_pred ----C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhcccc-CccchhhhHhhhcCC-ccHHHHHH
Q 043805 400 ----Q---KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIACFF-NGEYIDFVTRIQDDP-MSIRDRLN 470 (555)
Q Consensus 400 ----~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~-~~~~~~~l~~~~~~~-~~~~~~l~ 470 (555)
+ .+.......+.. +..+...++..++.++..++-.. .......++..++.. ..+.+.++
T Consensus 234 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred HHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 0 112222222221 11223345555566666666542 235577777777766 66666777
Q ss_pred -HHHhccceeEeccCCEEE
Q 043805 471 -ILIDKSLITISSYGNRLR 488 (555)
Q Consensus 471 -~L~~~sLl~~~~~~~~~~ 488 (555)
.|++.++|.... .|+..
T Consensus 302 ~~l~~~gli~~~~-~g~~~ 319 (338)
T 3pfi_A 302 PYLLANGYIERTA-KGRIA 319 (338)
T ss_dssp HHHHHTTSEEEET-TEEEE
T ss_pred HHHHHcCceecCC-Ccccc
Confidence 899999998875 44443
No 29
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.92 E-value=9.7e-09 Score=93.10 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=42.2
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.....|+||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999998864 23456889999999999999999987643
No 30
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.86 E-value=8.6e-09 Score=97.29 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=103.4
Q ss_pred CCCCCcccch---hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHH
Q 043805 188 TDLDSFVGLN---SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 188 ~~~~~fvGR~---~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
...+.|+|++ ..++.+..+... ...+.+.|+|++|+|||+||+.+++..........++.. ...... .
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~~--~---- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHASI--S---- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGGS--C----
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHHH--H----
Confidence 4557788743 556666666542 245678999999999999999999887655444555541 111100 0
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---HHHHHHHhcCCCCC-CCC-ceEEEEeCchh-----
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---FTQLENLVGGSDKF-SPG-SRIIITTRDKR----- 334 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~l~~~~~~~-~~~-~~iliTsR~~~----- 334 (555)
.... +.+ .++.+|||||++.. ......+...+... ..+ ..+|+||+...
T Consensus 96 ----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 111 34679999999541 11122222211100 012 24777776431
Q ss_pred ----hhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHh
Q 043805 335 ----VLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 335 ----~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
+...+.....+++++++.++..+++...+..... ....+..+.+++.++|++..+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1111112368999999999999999987743222 12346678899999999877765544
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.2e-07 Score=95.08 Aligned_cols=198 Identities=13% Similarity=0.145 Sum_probs=111.4
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC--CCceEEEEechhhccccChHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD--FQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
|.....++|++..++.|..++..+.. +.+.|+|++|+|||++|+.++..+... +...+...+. +..... ..+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~~~~-~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDERGI-SIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCCCH-HHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---ccccch-HHH
Confidence 44557799999999999999874322 238899999999999999999876421 2211211111 111111 222
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCchh-hhhh-cCC
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDKR-VLDK-CGV 341 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~~-~~~ 341 (555)
...+.............. .....-...+-+|++|+++.. ......+...+.......++|+++.... +... ...
T Consensus 107 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 107 REKVKNFARLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp TTHHHHHHHSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHhhhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 222222211110000000 000111234579999999641 2333344333322234566777765432 1111 112
Q ss_pred CeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 342 DNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 342 ~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
...+.+.+++.++..+.+...+...... ..++..+.|++.++|+|..+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3578999999999999998876332221 235678899999999998754443
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.82 E-value=5.5e-08 Score=98.23 Aligned_cols=203 Identities=14% Similarity=0.071 Sum_probs=109.4
Q ss_pred CCCcccchhhHHHHHhh---hcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 190 LDSFVGLNSRIEEMKSL---MCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~---L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
.+.|+|++...+.+..+ +..+....+.+.|+|++|+|||+||+.+++.+....+. +.+.+..-..........+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 56899999997775443 33333334689999999999999999999988643222 122211111111222222222
Q ss_pred HHHHHhCC---------------------cc---CC-------CCCchhHHHHHHh-----ccC----ceEEEEeCCCC-
Q 043805 267 VISRVLGE---------------------NL---KI-------GTPTIPQNIRKRL-----QRI----KVLIVLDDVHD- 305 (555)
Q Consensus 267 ll~~~~~~---------------------~~---~~-------~~~~l~~~l~~~l-----~~~----~~LlVlDdv~~- 305 (555)
.+....+. .. .. ....+...+.... .++ +.+|+||+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221110 00 00 0112222222211 122 46999999965
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEeCc------------h-hh-hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCCh
Q 043805 306 GFTQLENLVGGSDKFSPGSRIIITTRD------------K-RV-LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSH 371 (555)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~iliTsR~------------~-~~-~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~ 371 (555)
.......+...+...... .+++++.. . .+ .........+.+++++.++..+++...+..... .
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~--~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV--E 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--C
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence 234445555444433233 34444421 1 01 011123356899999999999999987743222 2
Q ss_pred hHHHHHHHHHHHhc-CCchHHHHHHh
Q 043805 372 DLLELSQEVVCYAD-GNPLALEVLGS 396 (555)
Q Consensus 372 ~~~~~~~~i~~~~~-G~PLal~~~a~ 396 (555)
...+..+.|++.+. |+|..+..+..
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 23566788999998 88876665543
No 33
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.79 E-value=8.4e-08 Score=93.61 Aligned_cols=166 Identities=9% Similarity=0.028 Sum_probs=98.5
Q ss_pred CcccchhhHHHHHhhhcc--cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC-----C--ceEEEEechhhccccChHH
Q 043805 192 SFVGLNSRIEEMKSLMCL--ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF-----Q--GKCFVADVREESNKMGVIH 262 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~--~~~~~~~~~~~~~~~~~~~ 262 (555)
.+.||++|+++|...|.. ..+.++.+.|+|++|+|||++++.+++.+.... + ..+.+.+. ...+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----ELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----ccCCHHH
Confidence 389999999999988763 244567889999999999999999999875432 1 23344422 2233445
Q ss_pred HHHHHHHHHhCCccCCCCCchhHHHHHHh------ccCceEEEEeCCCCc--HHHHHHHhcCCCCCCCCceEEEEeCchh
Q 043805 263 VRDEVISRVLGENLKIGTPTIPQNIRKRL------QRIKVLIVLDDVHDG--FTQLENLVGGSDKFSPGSRIIITTRDKR 334 (555)
Q Consensus 263 ~~~~ll~~~~~~~~~~~~~~l~~~l~~~l------~~~~~LlVlDdv~~~--~~~~~~l~~~~~~~~~~~~iliTsR~~~ 334 (555)
.+..+..++.+.... .......+.+.+ .+++++++||+++.. .+.+-.++...........||.++....
T Consensus 97 ~~~~I~~~L~g~~~~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLC--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCC--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 666777776544221 122223333332 346799999999761 2333333321111112334444443211
Q ss_pred ----hh-----hhcCCCeEEEeecCChHHHHHHHHHHhh
Q 043805 335 ----VL-----DKCGVDNIFEVKGLQHSKALELFCRKAF 364 (555)
Q Consensus 335 ----~~-----~~~~~~~~~~l~~L~~~ea~~Ll~~~~~ 364 (555)
.+ +.+ ....+.++|++.+|..+++..++.
T Consensus 175 ~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 121 125789999999999999998873
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=8.8e-08 Score=101.10 Aligned_cols=189 Identities=14% Similarity=0.161 Sum_probs=105.3
Q ss_pred CCCCCCcccchhhHHHHHhhhcccC---------------CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEec
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLES---------------HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADV 251 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 251 (555)
|.....++|++..++.|.+++.... +..+.+.|+|++|+|||++|+.+++.+. + ..+.+. .
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~-~~i~in-~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--Y-DILEQN-A 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--C-EEEEEC-T
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--C-CEEEEe-C
Confidence 3455779999999999999886310 1346899999999999999999998873 1 122222 1
Q ss_pred hhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHH--HhccCceEEEEeCCCCc----H---HHHHHHhcCCCCCCC
Q 043805 252 REESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRK--RLQRIKVLIVLDDVHDG----F---TQLENLVGGSDKFSP 322 (555)
Q Consensus 252 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~--~l~~~~~LlVlDdv~~~----~---~~~~~l~~~~~~~~~ 322 (555)
+.... .......+...... .....+...... ....++.+|+||+++.. . ..+..++.. .
T Consensus 111 ---s~~~~-~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~ 178 (516)
T 1sxj_A 111 ---SDVRS-KTLLNAGVKNALDN---MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----T 178 (516)
T ss_dssp ---TSCCC-HHHHHHTGGGGTTB---CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----C
T ss_pred ---CCcch-HHHHHHHHHHHhcc---ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----c
Confidence 11111 11222221111110 011111110000 12356789999999541 1 223333322 2
Q ss_pred CceEEEEeCch---hhhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 323 GSRIIITTRDK---RVLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 323 ~~~iliTsR~~---~~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
+..||+++... .+.........+.+++++.++..+++...+....... .++....|++.++|.+..+..
T Consensus 179 ~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 179 STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHH
T ss_pred CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHH
Confidence 33455554432 1222223456799999999999999988764332211 124577899999996654433
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=1.3e-07 Score=91.86 Aligned_cols=186 Identities=19% Similarity=0.240 Sum_probs=104.9
Q ss_pred CCCCCCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhh
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCLE-----------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREE 254 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 254 (555)
+....+.++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.++......+ +.+. ....
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHH
Confidence 3445678999999999998877421 12345689999999999999999998764321 2222 1111
Q ss_pred ccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------H---HHHHHHhcCCC-
Q 043805 255 SNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------F---TQLENLVGGSD- 318 (555)
Q Consensus 255 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~---~~~~~l~~~~~- 318 (555)
.... . ..... .+...+.......+.+|+||+++.. . ..+..++..+.
T Consensus 88 ~~~~-~-~~~~~---------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 88 VKKF-I-GEGAS---------------LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CCCS-T-THHHH---------------HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred HHhc-c-chHHH---------------HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 1100 0 00000 1111222333456789999999641 0 12222222111
Q ss_pred -CCCCCceEEEEeCchhhhh-----hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcC-CchHH
Q 043805 319 -KFSPGSRIIITTRDKRVLD-----KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADG-NPLAL 391 (555)
Q Consensus 319 -~~~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal 391 (555)
....+..||.||.....+. .......+.+++++.++..+++...+........ .....++..+.| .|-.|
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHH
Confidence 1124667777876543221 1122347899999999999999887743222111 124567777777 45455
Q ss_pred HHHH
Q 043805 392 EVLG 395 (555)
Q Consensus 392 ~~~a 395 (555)
..+.
T Consensus 228 ~~l~ 231 (285)
T 3h4m_A 228 KAIC 231 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.73 E-value=2.5e-07 Score=92.80 Aligned_cols=188 Identities=10% Similarity=0.082 Sum_probs=106.2
Q ss_pred CCCCCCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhc
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCL----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREES 255 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 255 (555)
++...+.++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++...... .+.+. .....
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~i~-~~~l~ 154 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT---FFSIS-ASSLT 154 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE---EEEEE-GGGGC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe---EEEEe-hHHhh
Confidence 344557799999999999887642 11235678999999999999999999876322 12222 11111
Q ss_pred cccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH-------------HHHHHHhcCC----C
Q 043805 256 NKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF-------------TQLENLVGGS----D 318 (555)
Q Consensus 256 ~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~~l~~~~----~ 318 (555)
.. ........ +...+......++.+|+||+++. . .....++..+ .
T Consensus 155 ~~--~~g~~~~~---------------~~~~~~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 155 SK--WVGEGEKM---------------VRALFAVARCQQPAVIFIDEIDS-LLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp CS--STTHHHHH---------------HHHHHHHHHHTCSEEEEEETHHH-HTBC------CHHHHHHHHHHHHHHC---
T ss_pred cc--ccchHHHH---------------HHHHHHHHHhcCCeEEEEeCchh-hhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 10 00000001 11111122235678999999953 1 1122222211 1
Q ss_pred CCCCCceEEEEeCchhhhh-h--cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcC-CchHHHHH
Q 043805 319 KFSPGSRIIITTRDKRVLD-K--CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADG-NPLALEVL 394 (555)
Q Consensus 319 ~~~~~~~iliTsR~~~~~~-~--~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 394 (555)
....+..||.||.....+. . ......+.++..+.++..+++...+...... ...+....|++.+.| .+-.|..+
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHH
Confidence 1124556666665432111 1 1234578899999999999998876332211 123567788899988 45566666
Q ss_pred Hhh
Q 043805 395 GSS 397 (555)
Q Consensus 395 a~~ 397 (555)
...
T Consensus 295 ~~~ 297 (357)
T 3d8b_A 295 CRE 297 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=1.2e-07 Score=95.28 Aligned_cols=201 Identities=11% Similarity=0.061 Sum_probs=108.9
Q ss_pred CCCCCCcccchhhHHHHHhhh-cccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEe---------------
Q 043805 187 STDLDSFVGLNSRIEEMKSLM-CLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVAD--------------- 250 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~--------------- 250 (555)
|...+.++|++..++.|.+++ ..+. .+. +.|+|++|+||||+++.++..+.......+.+..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 344567999999999999988 5332 233 8999999999999999999854322111111110
Q ss_pred --------chhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCC
Q 043805 251 --------VREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFS 321 (555)
Q Consensus 251 --------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~ 321 (555)
+.............+..+..+..... ..... .+ ..+..++-+++||+++. +......+...+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ---VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc---ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 00000000000012222222211000 00000 00 00234677999999965 1233333433332223
Q ss_pred CCceEEEEeCchh-hhh-hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhH-HHHHHHHHHHhcCCchHHHHHHh
Q 043805 322 PGSRIIITTRDKR-VLD-KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDL-LELSQEVVCYADGNPLALEVLGS 396 (555)
Q Consensus 322 ~~~~iliTsR~~~-~~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~~a~ 396 (555)
.++.+|++|.+.. +.. .......+++.+++.++..+.+...+...+.. -. ++.+..|++.++|.+..+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5677887776532 211 12344789999999999999998876332211 11 35578899999999876655443
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.69 E-value=9e-08 Score=98.74 Aligned_cols=186 Identities=12% Similarity=0.148 Sum_probs=106.0
Q ss_pred CCCCcc-cchhhH--HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCc--eEEEEechhhccccChHHH
Q 043805 189 DLDSFV-GLNSRI--EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQG--KCFVADVREESNKMGVIHV 263 (555)
Q Consensus 189 ~~~~fv-GR~~el--~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 263 (555)
..+.|+ |....+ ..+.+..... .....+.|+|++|+|||+||+.+++.+...++. .+++. . ..+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~-~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~---------~~~ 171 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHP-GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKF 171 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHST-TSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-H---------HHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHH
Confidence 445677 655443 2333333222 125678999999999999999999987655432 33333 1 112
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH---HHHHHHhcCCCC-CCCCceEEEEeCch------
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF---TQLENLVGGSDK-FSPGSRIIITTRDK------ 333 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~l~~~~~~-~~~~~~iliTsR~~------ 333 (555)
...+...+... ....+...+..++.+|+|||++... ...+.+...+.. ...+..||+||.+.
T Consensus 172 ~~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 172 LNDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 22333332211 1122334444467899999995411 222333222110 12466788888753
Q ss_pred ---hhhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 334 ---RVLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 334 ---~~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
.+...+.....+.+++++.++..+++...+....... ..+....|+..++|++--+.-+.
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHH
Confidence 1222233345788999999999999988764222111 12456788899999987665443
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.68 E-value=7.7e-07 Score=85.71 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=92.8
Q ss_pred CCcccchhhHHHHHh-------hhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHH
Q 043805 191 DSFVGLNSRIEEMKS-------LMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIH 262 (555)
Q Consensus 191 ~~fvGR~~el~~l~~-------~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 262 (555)
..++|....++.+.. .+. ......+.+.|+|++|+|||+||+.+++..... .+.+........ .....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~~~~~~~g-~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKICSPDKMIG-FSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEECGGGCTT-CCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeCHHHhcC-CchHH
Confidence 457888877666655 222 123457789999999999999999999875322 122221110000 00000
Q ss_pred HHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-----------HHHHHHHh---cCCCCCCCCceEEE
Q 043805 263 VRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-----------FTQLENLV---GGSDKFSPGSRIII 328 (555)
Q Consensus 263 ~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~l~---~~~~~~~~~~~ili 328 (555)
.. ..+...+......++.+|+||+++.. ...+..+. ......+....||.
T Consensus 109 ~~----------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 109 KC----------------QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HH----------------HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HH----------------HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 00 01111222333356789999998541 12233333 22222234556777
Q ss_pred EeCchhhhhh---cC-CCeEEEeecCCh-HHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC
Q 043805 329 TTRDKRVLDK---CG-VDNIFEVKGLQH-SKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN 387 (555)
Q Consensus 329 TsR~~~~~~~---~~-~~~~~~l~~L~~-~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (555)
||.....+.. .. ....+.+++++. ++..+++.... .. ..+....+++.+.|.
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS---CHHHHHHHHHHHTTS
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC---CHHHHHHHHHHhcCC
Confidence 7776644332 11 246789999988 66666665432 11 134577888888884
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.67 E-value=3.5e-07 Score=90.44 Aligned_cols=188 Identities=15% Similarity=0.127 Sum_probs=106.4
Q ss_pred CCCCCCCcccchhhHHHHHhhhc----------ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhc
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMC----------LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREES 255 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 255 (555)
|+..-..++|.+..++.|.+.+. ......+.+.|+|++|+|||+||+.+++.....| +.+. .....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHHHh
Confidence 34455779999999999988762 1112246789999999999999999998764321 2222 11110
Q ss_pred cccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH------------HHHHHHhc---CCCCC
Q 043805 256 NKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF------------TQLENLVG---GSDKF 320 (555)
Q Consensus 256 ~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~------------~~~~~l~~---~~~~~ 320 (555)
. ...+. ....+...+......++.+|+||+++... .....++. .....
T Consensus 89 ~-------------~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 89 S-------------KWMGE----SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp T-------------TTGGG----HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred h-------------cccch----HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 0 00000 00011111222334567899999996410 11222222 12122
Q ss_pred CCCceEEEEeCchhhhhh---cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC-chHHHHHHh
Q 043805 321 SPGSRIIITTRDKRVLDK---CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN-PLALEVLGS 396 (555)
Q Consensus 321 ~~~~~iliTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a~ 396 (555)
..+..||.||..+..+.. ......+.++..+.++-.+++...+....... .......|++.+.|. +-.|..+..
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 355666767765422110 12346788999999999999998874322211 234567888888874 545555544
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.65 E-value=1.1e-06 Score=83.82 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=101.4
Q ss_pred CCCCcccchhhHHHHHhhhcc---c-------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL---E-------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM 258 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 258 (555)
....++|.+...+.|.+++.. . ....+.+.|+|++|+|||+||+.+++..... .+.+. ........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~-~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMA-GAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEE-TTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEec-hHHHHhhc
Confidence 345689999888888765431 0 1234568899999999999999999876432 22222 11111100
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH-----------------HHHHHHhcCCCC--
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF-----------------TQLENLVGGSDK-- 319 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~~l~~~~~~-- 319 (555)
. .... ..+...+.......+.+|+||+++. . ..+..++..+..
T Consensus 80 ~--~~~~---------------~~~~~~~~~a~~~~~~vl~iDeid~-l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 80 G--GLGA---------------ARVRSLFKEARARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp T--THHH---------------HHHHHHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHTCC
T ss_pred c--ChhH---------------HHHHHHHHHHHhcCCeEEEEeCcch-hhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0 0000 0111222233345688999999975 2 112233221111
Q ss_pred CCCCceEEEEeCchhhhh-h-c---CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch-HHHH
Q 043805 320 FSPGSRIIITTRDKRVLD-K-C---GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL-ALEV 393 (555)
Q Consensus 320 ~~~~~~iliTsR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 393 (555)
...+..+|.||.....+. . . .....+.+++++.++-.+++...+..... ..........++..+.|++- .|..
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 124556777775543211 1 1 23467889999999999999887743222 22222234678888888754 4544
Q ss_pred HHh
Q 043805 394 LGS 396 (555)
Q Consensus 394 ~a~ 396 (555)
+..
T Consensus 221 l~~ 223 (262)
T 2qz4_A 221 ICN 223 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.65 E-value=4.4e-07 Score=89.81 Aligned_cols=185 Identities=14% Similarity=0.117 Sum_probs=101.7
Q ss_pred CCCCCCCcc-cchhh--HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHH
Q 043805 186 NSTDLDSFV-GLNSR--IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIH 262 (555)
Q Consensus 186 ~~~~~~~fv-GR~~e--l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 262 (555)
+....+.|+ |.... ...+.............+.|+|++|+|||+||+.+++.+.......+++. . ..
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~---------~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A---------DD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H---------HH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H---------HH
Confidence 334456676 54433 33444444332223567899999999999999999987754422334443 1 11
Q ss_pred HHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH---HHHHHHhcCCCC-CCCCceEEEEeCchh----
Q 043805 263 VRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF---TQLENLVGGSDK-FSPGSRIIITTRDKR---- 334 (555)
Q Consensus 263 ~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~l~~~~~~-~~~~~~iliTsR~~~---- 334 (555)
+...+...+... ....+.... .++.+|+|||++... .....+...+.. ...+..+|+|+....
T Consensus 76 ~~~~~~~~~~~~--------~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 76 FAQAMVEHLKKG--------TINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHHHT--------CHHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred HHHHHHHHHHcC--------cHHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 122222222110 111222223 246799999996511 222222221110 013556788775431
Q ss_pred -----hhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 335 -----VLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 335 -----~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
+...+.....+++++ +.++..+++...+...... -.++....|++.+ |+.-.+..
T Consensus 147 ~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 147 GVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp TSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHHHH
T ss_pred HhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHHHH
Confidence 222223346799999 9999999998887432222 2246678888888 88765433
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.64 E-value=8.2e-07 Score=88.92 Aligned_cols=188 Identities=14% Similarity=0.115 Sum_probs=104.5
Q ss_pred CCCCCCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhc
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCL----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREES 255 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 255 (555)
++.....++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++.....| +.+. ....
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~l- 120 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDL- 120 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHHH-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHHH-
Confidence 334456799999999999886621 112245688999999999999999998874321 1221 1110
Q ss_pred cccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH------------HHHHHHhcC---CCCC
Q 043805 256 NKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF------------TQLENLVGG---SDKF 320 (555)
Q Consensus 256 ~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~------------~~~~~l~~~---~~~~ 320 (555)
. ....+.....+...+......++.+|+||+++... .....++.. ....
T Consensus 121 ------------~----~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 121 ------------V----SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp ------------H----SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred ------------h----hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 0 00000000111111222233578999999997511 012223221 1111
Q ss_pred CCCceEEEEeCchhhhh---hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC-chHHHHHHh
Q 043805 321 SPGSRIIITTRDKRVLD---KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN-PLALEVLGS 396 (555)
Q Consensus 321 ~~~~~iliTsR~~~~~~---~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a~ 396 (555)
..+..||.||..+..+. .......+.++..+.++-.+++...+....... .......|++.+.|. +--|..+..
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 24566666765442111 113456788999999999999988773322111 234567888888884 545555544
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.62 E-value=3e-07 Score=94.70 Aligned_cols=181 Identities=16% Similarity=0.195 Sum_probs=107.0
Q ss_pred CCCCCCcccchhhH---HHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 187 STDLDSFVGLNSRI---EEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 187 ~~~~~~fvGR~~el---~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
|...+.++|.+..+ ..|...+..+ ..+.+.|+|++|+|||+||+.+++.....| ..+.. ...+. ..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f---~~l~a-----~~~~~-~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADV---ERISA-----VTSGV-KE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEE---EEEET-----TTCCH-HH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCe---EEEEe-----ccCCH-HH
Confidence 45567899999988 7777777643 336789999999999999999998775332 11110 11111 11
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEE-EeCchhh---hhh
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIII-TTRDKRV---LDK 338 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~ili-TsR~~~~---~~~ 338 (555)
.+.++.... .....+++.+|+||+++.. ......|+..+.. ....+|. ||.+... ...
T Consensus 91 ir~~~~~a~---------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 91 IREAIERAR---------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHHHH---------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHHHH---------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 222221111 0112356789999999651 2233344433332 2344444 4444321 111
Q ss_pred cCCCeEEEeecCChHHHHHHHHHHhhccC-----CCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 339 CGVDNIFEVKGLQHSKALELFCRKAFRQN-----NRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 339 ~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
......+.+.+++.++..+++...+.... .......+..+.|++.++|++..+.-+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 22346889999999999999988874311 1122345678889999999987665443
No 45
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.62 E-value=1.8e-07 Score=84.25 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=41.7
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 189 DLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
....++||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999998864 23456789999999999999999987644
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.61 E-value=1.2e-06 Score=90.39 Aligned_cols=190 Identities=15% Similarity=0.137 Sum_probs=109.1
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhh
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCL----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREE 254 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 254 (555)
.++...+.++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.++..... ..++....
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~--- 201 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISS--- 201 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECC---
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeH---
Confidence 3445557899999999998876521 1123467899999999999999999987621 11111111
Q ss_pred ccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhcCCCC---
Q 043805 255 SNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVGGSDK--- 319 (555)
Q Consensus 255 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~~~~--- 319 (555)
. .+ .....+ .....+...+.......+.+|+||+++.. ......++..+..
T Consensus 202 --~-~l-------~~~~~g----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 202 --S-DL-------VSKWLG----ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp --C---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred --H-HH-------Hhhhcc----hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 0 00 011111 11222333333333467899999999751 1233445544432
Q ss_pred CCCCceEEEEeCchhhhhh---cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC-chHHHHHH
Q 043805 320 FSPGSRIIITTRDKRVLDK---CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN-PLALEVLG 395 (555)
Q Consensus 320 ~~~~~~iliTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a 395 (555)
...+..||.||..+..+.. ......+.++..+.++-..++...+...... ........|++.+.|. +-.|..+.
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345667767754422110 1234578898999999999998877322211 1234567888888884 44555554
Q ss_pred h
Q 043805 396 S 396 (555)
Q Consensus 396 ~ 396 (555)
.
T Consensus 346 ~ 346 (444)
T 2zan_A 346 R 346 (444)
T ss_dssp H
T ss_pred H
Confidence 4
No 47
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.57 E-value=3.9e-06 Score=83.29 Aligned_cols=257 Identities=13% Similarity=0.124 Sum_probs=138.9
Q ss_pred CCCCCcccchhhHHHHHhhhccc---CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLE---SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVR 264 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (555)
...+.++|.+..++.+...+..+ ......++|+|++|+|||||++.++..+...+. ... . .. ...... +
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s-g-~~--~~~~~~-l 93 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS-G-PV--LVKQGD-M 93 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE-T-TT--CCSHHH-H
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-c-hH--hcCHHH-H
Confidence 34567899998888888777532 223457899999999999999999987743321 111 0 00 000000 0
Q ss_pred HHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHH-HHHHHhc---CCCC-----CC----------CCce
Q 043805 265 DEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFT-QLENLVG---GSDK-----FS----------PGSR 325 (555)
Q Consensus 265 ~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~-~~~~l~~---~~~~-----~~----------~~~~ 325 (555)
..++ ..+ .++.++++|+++.... ..+.+.. .... .+ +...
T Consensus 94 ~~~~--------------------~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 94 AAIL--------------------TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp HHHH--------------------HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred HHHH--------------------HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1110 111 2345788898854111 2222211 1100 00 1223
Q ss_pred EEE-EeCchhhhhhc--CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHHhhhc---
Q 043805 326 III-TTRDKRVLDKC--GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLGSSLH--- 399 (555)
Q Consensus 326 ili-TsR~~~~~~~~--~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~--- 399 (555)
++- |++...+.... .......+++.+.++..+++.+.+.... .....+.+..|++.+.|.|-.+..+...+.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 333 33332221111 1234688999999999999988763222 223356788999999999976544433221
Q ss_pred ---C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCHhhHHHHhhhcc-c-cCccchhhhHhhhcCC-ccHHHHHH
Q 043805 400 ---Q---KSKQQWEDKLHNLKLISEPSIYKVLKISYDELNSEEKEIFLDIAC-F-FNGEYIDFVTRIQDDP-MSIRDRLN 470 (555)
Q Consensus 400 ---~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~-f-~~~~~~~~l~~~~~~~-~~~~~~l~ 470 (555)
+ -+.......+..+.. .-..|+...+.++..++- | ..+...+.++...+.+ ...++..+
T Consensus 231 ~~~~~~~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 1 122222222222211 112455555566655443 3 3346667777777665 44454444
Q ss_pred -HHHhccceeEeccCCEEE
Q 043805 471 -ILIDKSLITISSYGNRLR 488 (555)
Q Consensus 471 -~L~~~sLl~~~~~~~~~~ 488 (555)
.|...|+|+... .|+..
T Consensus 299 ~~l~~~g~i~~~~-~gr~~ 316 (334)
T 1in4_A 299 PYLLQAGFLARTP-RGRIV 316 (334)
T ss_dssp HHHHHTTSEEEET-TEEEE
T ss_pred HHHHHcCCeeccc-ccHHh
Confidence 899999999987 55553
No 48
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.56 E-value=1.2e-07 Score=93.14 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=86.5
Q ss_pred CcccchhhHHHHHhhhccc-------------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC----ceEEEEechhh
Q 043805 192 SFVGLNSRIEEMKSLMCLE-------------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ----GKCFVADVREE 254 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~ 254 (555)
.++|.+...+.|.+.+... ......+.|+|++|+|||+||+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 3788888888887655310 233457899999999999999999987644321 122221 1111
Q ss_pred ccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc-cCceEEEEeCCCC----------cHHHHHHHhcCCCCCCCC
Q 043805 255 SNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ-RIKVLIVLDDVHD----------GFTQLENLVGGSDKFSPG 323 (555)
Q Consensus 255 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~-~~~~LlVlDdv~~----------~~~~~~~l~~~~~~~~~~ 323 (555)
... . .......+...+. .++.+|+||+++. .......|+..+.....+
T Consensus 111 ~~~--~-------------------~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 111 VGQ--Y-------------------IGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CCS--S-------------------TTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hhh--c-------------------ccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 000 0 0000111111111 1356999999973 133444554444333356
Q ss_pred ceEEEEeCchh----------hhhhcCCCeEEEeecCChHHHHHHHHHHhh
Q 043805 324 SRIIITTRDKR----------VLDKCGVDNIFEVKGLQHSKALELFCRKAF 364 (555)
Q Consensus 324 ~~iliTsR~~~----------~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~ 364 (555)
..+|+||.... +... ....+.+++++.++..+++...+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 67777775432 1111 236899999999999999988774
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.55 E-value=3.3e-06 Score=82.33 Aligned_cols=184 Identities=15% Similarity=0.118 Sum_probs=104.0
Q ss_pred CCCCCCCcccchhhHHHHHhhhccc----------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhc
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCLE----------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREES 255 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 255 (555)
++...+.++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.++......| +.+. .....
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~ 91 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLT 91 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHh
Confidence 4445578999999999998876320 12346789999999999999999998764221 2222 11110
Q ss_pred cc-c-ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhc---CCC
Q 043805 256 NK-M-GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVG---GSD 318 (555)
Q Consensus 256 ~~-~-~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~---~~~ 318 (555)
.. . ..... +...+.......+.+|+||+++.. ......++. ...
T Consensus 92 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 92 SKYVGDGEKL-------------------VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp SSSCSCHHHH-------------------HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC
T ss_pred hcccchHHHH-------------------HHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc
Confidence 00 0 00111 111112223356789999999541 011112221 111
Q ss_pred C--CCCCceEEEEeCchh-----hhhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch-H
Q 043805 319 K--FSPGSRIIITTRDKR-----VLDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL-A 390 (555)
Q Consensus 319 ~--~~~~~~iliTsR~~~-----~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-a 390 (555)
. .+.+..||.||..+. +.. .....+.++..+.++-..++...+...... ...+....+++.+.|++- .
T Consensus 153 ~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~ 228 (297)
T 3b9p_A 153 GNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSD 228 (297)
T ss_dssp ------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHH
T ss_pred ccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHH
Confidence 1 123456676776542 222 234678888888888888888776332221 123457788899999875 5
Q ss_pred HHHHHh
Q 043805 391 LEVLGS 396 (555)
Q Consensus 391 l~~~a~ 396 (555)
|..+..
T Consensus 229 l~~l~~ 234 (297)
T 3b9p_A 229 LTALAK 234 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.55 E-value=5e-07 Score=89.40 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=104.6
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHH
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
|...+.++|++..++.|.+++..+ ..+..+.++|++|+|||++|+.+++.+.. ..+.+. . .... ...+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~-~----~~~~-~~~i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN-G----SDCK-IDFVRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE-T----TTCC-HHHHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc-c----cccC-HHHHHH
Confidence 345578999999999999998743 23467888999999999999999987742 222322 1 1111 222222
Q ss_pred HHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH--HHHHHHhcCCCCCCCCceEEEEeCchhhh-hh-cCCC
Q 043805 267 VISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF--TQLENLVGGSDKFSPGSRIIITTRDKRVL-DK-CGVD 342 (555)
Q Consensus 267 ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~~-~~~~ 342 (555)
.+....... ...+++.+|+|||++... +....|...+.....++.+|+||....-. .. ....
T Consensus 92 ~~~~~~~~~--------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 92 PLTNFASAA--------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHHBC--------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHHhhc--------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 222211100 011367899999998722 23344443332223566788887654211 10 1123
Q ss_pred eEEEeecCChHHHHHHH-------HHHhhccCCCChhHHHHHHHHHHHhcCCchHHHH
Q 043805 343 NIFEVKGLQHSKALELF-------CRKAFRQNNRSHDLLELSQEVVCYADGNPLALEV 393 (555)
Q Consensus 343 ~~~~l~~L~~~ea~~Ll-------~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 393 (555)
..+++++++.++-.+++ ...+.......+ ..+....+++.++|++..+..
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHHHH
Confidence 57999999988743332 222211111111 125677888999998875443
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.54 E-value=1.6e-06 Score=88.06 Aligned_cols=189 Identities=16% Similarity=0.126 Sum_probs=104.0
Q ss_pred CCCCCCCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhh
Q 043805 185 SNSTDLDSFVGLNSRIEEMKSLMCL----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREE 254 (555)
Q Consensus 185 ~~~~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 254 (555)
.++.....++|.+..++.|...+.. .....+.+.|+|++|+|||+||+.++...... ++.......
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l 184 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASL 184 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHh
Confidence 3455567899999999999887731 01224678999999999999999998875422 222111111
Q ss_pred ccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhcCC----C
Q 043805 255 SNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVGGS----D 318 (555)
Q Consensus 255 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~~----~ 318 (555)
... .. +. ....+...+.......+.+|+||+++.. ......++..+ .
T Consensus 185 ~~~--~~-----------g~----~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 185 TSK--YV-----------GE----GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred hcc--cc-----------ch----HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 000 00 00 0001111122222346689999999641 01112222111 1
Q ss_pred CCCCCceEEEEeCchhhhh-h-c-CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCch-HHHHH
Q 043805 319 KFSPGSRIIITTRDKRVLD-K-C-GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPL-ALEVL 394 (555)
Q Consensus 319 ~~~~~~~iliTsR~~~~~~-~-~-~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 394 (555)
.......||.||.....+. . . .....+.++..+.++-.+++...+...... ...+....|+..+.|..- .|..+
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1123456666665432111 0 1 233578899999999999998877332222 223467788888888654 56555
Q ss_pred Hh
Q 043805 395 GS 396 (555)
Q Consensus 395 a~ 396 (555)
..
T Consensus 326 ~~ 327 (389)
T 3vfd_A 326 AK 327 (389)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 52
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.54 E-value=1.5e-06 Score=85.74 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=103.6
Q ss_pred CCCCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCL----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNK 257 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 257 (555)
..-+.++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++..... ..+.+. .......
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~-~~~l~~~ 85 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSIS-SSDLVSK 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEE-CCSSCCS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEE-hHHHHhh
Confidence 3446788988888888765521 11234678999999999999999999876211 112222 1111000
Q ss_pred cChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH-------------HHHHHHhc---CCCCCC
Q 043805 258 MGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF-------------TQLENLVG---GSDKFS 321 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~~l~~---~~~~~~ 321 (555)
..+.....+...+......++.+|+||+++. . .....++. .+....
T Consensus 86 -----------------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 86 -----------------WLGESEKLVKNLFQLARENKPSIIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp -----------------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTG-GGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred -----------------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHH-hccccccccchHHHHHHHHHHHHHhcccccC
Confidence 0000001111112222335688999999975 2 11222222 221122
Q ss_pred CCceEEEEeCchhhhh---hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC-chHHHHHHh
Q 043805 322 PGSRIIITTRDKRVLD---KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN-PLALEVLGS 396 (555)
Q Consensus 322 ~~~~iliTsR~~~~~~---~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~a~ 396 (555)
.+..||.||..+..+. .......+.++..+.++-.+++...+....... .......|++.+.|. +-.|..+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556666665432111 013446789999999999999988773322111 234577888888887 444655554
No 53
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.53 E-value=1.6e-06 Score=86.03 Aligned_cols=174 Identities=11% Similarity=0.080 Sum_probs=101.7
Q ss_pred hhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCC---------------------ceEEEEechhhc
Q 043805 197 NSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQ---------------------GKCFVADVREES 255 (555)
Q Consensus 197 ~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~~~~~ 255 (555)
+...+.|.+.+..+ .-+..+.++|++|+|||++|..+++.+..... ...++. .....
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTTC
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-ccccC
Confidence 45566666666532 23567899999999999999999987643321 111111 00000
Q ss_pred cccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchh
Q 043805 256 NKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKR 334 (555)
Q Consensus 256 ~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 334 (555)
.... .+..+.+...+... -..+++-++|+|+++. .......|+..+....+++.+|++|.++.
T Consensus 86 ~~~~-i~~ir~l~~~~~~~---------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 86 NTLG-VDAVREVTEKLNEH---------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSBC-HHHHHHHHHHTTSC---------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCC-HHHHHHHHHHHhhc---------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 0001 11111222111100 0124567999999965 23445556555544446677777776542
Q ss_pred -hhh-hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHHH
Q 043805 335 -VLD-KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVLG 395 (555)
Q Consensus 335 -~~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 395 (555)
+.. .......+++.+++.++..+++.... .. .++.+..++..++|.|..+..+.
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 222 22345789999999999999998875 11 23456789999999997665443
No 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=1.4e-06 Score=86.72 Aligned_cols=186 Identities=13% Similarity=0.169 Sum_probs=105.9
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEEechhhccccChHHHHHH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVADVREESNKMGVIHVRDE 266 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ 266 (555)
.....++|.+..++.|...+..+ ..+.+.++|++|+||||+|+.++..+... +...+.-.+ .+...+. ...+.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~~~~-~~ir~ 95 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDRGI-DVVRN 95 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCCSH-HHHHT
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---CcccccH-HHHHH
Confidence 34456889999999999888643 22238899999999999999999876432 111111111 1111111 11222
Q ss_pred HHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCchh-hhh-hcCCCe
Q 043805 267 VISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDKR-VLD-KCGVDN 343 (555)
Q Consensus 267 ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~-~~~~~~ 343 (555)
.+..+.... ....+.+-++|+|+++. .......+...+......+.+|+++.... +.. ......
T Consensus 96 ~i~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 96 QIKDFASTR-------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHHBC-------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHHhhc-------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 222211000 00113467899999954 12333334333322235566777665432 111 112345
Q ss_pred EEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 344 IFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 344 ~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
.+.+.+++.++..+.+...+-..... -.++..+.+++.++|.+.-+..+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78999999999999998776322211 22456788999999998754333
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.43 E-value=1.4e-06 Score=90.65 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=86.2
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------CceEEEEechhhccccCh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGKCFVADVREESNKMGV 260 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 260 (555)
|...+.++||+.+++.+...+... ...-+.|+|++|+|||+||+.+++.+.... ...++..+..
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred cCCCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 345567999999999999998643 234568999999999999999999874432 1112211110
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhh-----
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRV----- 335 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~----- 335 (555)
... .+.....+...+...-...+.+|++| -. .+....|.+.+.. ...++|.+|.....
T Consensus 246 --------~~~----~g~~e~~~~~~~~~~~~~~~~iLfiD--~~-~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 --------TKY----RGEFEDRLKKVMDEIRQAGNIILFID--AA-IDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C---------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred --------ccc----cchHHHHHHHHHHHHHhcCCeEEEEe--Cc-hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhh
Confidence 000 00111223333334444568899999 22 3334445555432 34566665554321
Q ss_pred -hh-hcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 336 -LD-KCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 336 -~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.. .......+.+++++.++..+++....
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 00 11134579999999999999998765
No 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.42 E-value=2.8e-06 Score=83.03 Aligned_cols=179 Identities=13% Similarity=0.138 Sum_probs=102.0
Q ss_pred CCCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
...+.++|.+...++|.+.+.. +-...+.+.|+|++|+|||+||+.++...... .+.+.
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~---~i~v~------- 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIK------- 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE---EEEEC-------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC---EEEEE-------
Confidence 3446789999988888876642 12335678999999999999999999876422 11211
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHH---------------HHHHHhcCCC--C
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFT---------------QLENLVGGSD--K 319 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~---------------~~~~l~~~~~--~ 319 (555)
... +.....+. ....+...+.......+.+|+||+++.... ....++..+. .
T Consensus 82 ---~~~----l~~~~~g~----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 ---GPE----LLTMWFGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp ---HHH----HHHHHHTT----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred ---hHH----HHhhhcCc----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 111 11222221 122233334444456789999999975111 1222322211 1
Q ss_pred CCCCceEEEEeCchhhh-----hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCchH
Q 043805 320 FSPGSRIIITTRDKRVL-----DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNPLA 390 (555)
Q Consensus 320 ~~~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 390 (555)
...+..||.||..+..+ ........+.++..+.++-.+++...+......... ....++..+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~---~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV---DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc---hHHHHHHHcCCCCHH
Confidence 12456777777654322 111234678999999999999988776322211110 133556667776643
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.38 E-value=1.8e-06 Score=96.72 Aligned_cols=158 Identities=14% Similarity=0.076 Sum_probs=83.4
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------CceEEEEechhhccccCh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGKCFVADVREESNKMGV 260 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 260 (555)
|...+.++||+.+++.+.+.+... ..+.++|+|++|+|||+||+.+++.+.... ...++..+..........
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~ 243 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 243 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc
Confidence 345577999999999999988643 234578999999999999999999874321 122222211111000000
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHhc-cCceEEEEeCCCCcH---------HHHHHHhcCCCCCCCCceEEEEe
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ-RIKVLIVLDDVHDGF---------TQLENLVGGSDKFSPGSRIIITT 330 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~-~~~~LlVlDdv~~~~---------~~~~~l~~~~~~~~~~~~iliTs 330 (555)
. ......+...+..... +++.+|+||+++... +....+.+.+.. ....+|.+|
T Consensus 244 ~---------------g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at 306 (854)
T 1qvr_A 244 R---------------GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEE
T ss_pred c---------------hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEec
Confidence 0 0000011111112222 367899999997511 111112221111 344566555
Q ss_pred Cchhh-----hh-hcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 331 RDKRV-----LD-KCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 331 R~~~~-----~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
..... .. .......+.+++++.++..+++....
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 43321 11 11233468999999999999997554
No 58
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.34 E-value=7.8e-07 Score=76.79 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 192 SFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.++|+...++++.+.+.........|.|+|++|+|||++|+.+++....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 5899999999998877532233345889999999999999999876533
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.33 E-value=2.4e-06 Score=88.89 Aligned_cols=181 Identities=15% Similarity=0.144 Sum_probs=100.9
Q ss_pred CCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc
Q 043805 190 LDSFVGLNSRIEEMKSLMCLE-----------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM 258 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 258 (555)
...++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.+++..... .+.+. ........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~vn-~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLIN-GPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE---EEEEE-HHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC---EEEEE-chHhhhhh
Confidence 356899999999998877531 2345678999999999999999998876321 22222 11111100
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhcCCC--CCCCCc
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVGGSD--KFSPGS 324 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~~~--~~~~~~ 324 (555)
... ....+...+.....+++.+|+||+++.. ......|+..+. ......
T Consensus 279 -~g~----------------~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 279 -AGE----------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp -TTH----------------HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred -cch----------------hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 000 0011222333444567889999999420 011222322221 112455
Q ss_pred eEEEEeCchhh-----hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC-chHHHHH
Q 043805 325 RIIITTRDKRV-----LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN-PLALEVL 394 (555)
Q Consensus 325 ~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 394 (555)
.||.||..+.. .........+.++..+.++-.++|..++........ .....++..+.|. +-.|..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 66667765422 111123457899999999999999887632221111 1134566666664 4444444
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=4.2e-06 Score=83.68 Aligned_cols=177 Identities=20% Similarity=0.230 Sum_probs=100.1
Q ss_pred CCCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
..-+...|-++..++|.+.+.. +-..++-+.++||||+|||.||+.++......| +.+. ......
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~s 220 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAELVQ 220 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGGSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHhhc
Confidence 3346678899888888775531 223456799999999999999999998875432 1222 111111
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCC--C
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSD--K 319 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~--~ 319 (555)
.. ...-... +...+...-...|++|++|+++.. ...+..++..+. .
T Consensus 221 k~--vGese~~---------------vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 KY--IGEGSRM---------------VRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp SS--TTHHHHH---------------HHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred cc--cchHHHH---------------HHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 10 0000111 111222333457999999999651 011233332221 1
Q ss_pred CCCCceEEEEeCchhh-----hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 320 FSPGSRIIITTRDKRV-----LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 320 ~~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
...+..||.||-.+.. .........+.++..+.++-.++|..++........ . ....|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d-v--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG-I--NLRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS-C--CHHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc-C--CHHHHHHHCCCCC
Confidence 1245566667754322 222235678999999999999999877633221111 0 1456777777753
No 61
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.25 E-value=3.9e-06 Score=82.17 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=37.6
Q ss_pred CcccchhhHHHHHhhhcc------------cCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 192 SFVGLNSRIEEMKSLMCL------------ESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++|++..++.+...+.. .......+.|+|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999988888876643 012245688999999999999999998774
No 62
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=1.1e-05 Score=78.54 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=88.9
Q ss_pred cchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh---cCCCceEEEEechhhccccChHHHHHHHHHHH
Q 043805 195 GLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS---RDFQGKCFVADVREESNKMGVIHVRDEVISRV 271 (555)
Q Consensus 195 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 271 (555)
|-++.++.|.+.+..+. .+...++|++|+|||++|..+++... ...+....+. ......-.+..++++..+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDDIRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHHHHHHHHHH
Confidence 44667778888876443 67889999999999999999987531 1223334433 111011122233344333
Q ss_pred hCCccCCCCCchhHHHHHHhccCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch-hhhhhcCCCeEEEeec
Q 043805 272 LGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK-RVLDKCGVDNIFEVKG 349 (555)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~~~~~~~~l~~ 349 (555)
...+ ..+++-++|+|+++. .....+.|+..+...++.+.+|++|.++ .+.+..... .+++.+
T Consensus 75 ~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 75 NYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp TSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred hhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 2110 013467999999965 2344555655554444677777776544 333333333 899999
Q ss_pred CChHHHHHHHHHHh
Q 043805 350 LQHSKALELFCRKA 363 (555)
Q Consensus 350 L~~~ea~~Ll~~~~ 363 (555)
++.++..+.+.+..
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.18 E-value=1e-05 Score=89.69 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=88.1
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC------CCceEEEEechhhccccChH
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD------FQGKCFVADVREESNKMGVI 261 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~ 261 (555)
...+.++||+.+++.+.+.|... ....+.|+|++|+|||++|+.++..+... ....++.........
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~----- 255 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA----- 255 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-----
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-----
Confidence 44567999999999999988643 33457899999999999999999876432 122233221111100
Q ss_pred HHHHHHHHHHhCCccCCCCCchhHHHH---HHh-ccCceEEEEeCCCCc---------HHH-HHHHhcCCCCCCCCceEE
Q 043805 262 HVRDEVISRVLGENLKIGTPTIPQNIR---KRL-QRIKVLIVLDDVHDG---------FTQ-LENLVGGSDKFSPGSRII 327 (555)
Q Consensus 262 ~~~~~ll~~~~~~~~~~~~~~l~~~l~---~~l-~~~~~LlVlDdv~~~---------~~~-~~~l~~~~~~~~~~~~il 327 (555)
+.. ........+. +.+ ..++.+|++|+++.. ... ...+...+.. ....+|
T Consensus 256 -----------~~~---~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I 319 (758)
T 1r6b_X 256 -----------GTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVI 319 (758)
T ss_dssp -----------CCC---CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEE
T ss_pred -----------ccc---ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEE
Confidence 000 0111111111 222 335789999999751 122 2233333332 345666
Q ss_pred EEeCchhhhhh-------cCCCeEEEeecCChHHHHHHHHHHh
Q 043805 328 ITTRDKRVLDK-------CGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 328 iTsR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.+|........ ......+.+++++.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 66654322110 1123468999999999999887654
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.17 E-value=1.2e-05 Score=78.42 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=38.5
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+.++|+...++++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 3589999999999887763223345688999999999999999988653
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.16 E-value=1.5e-05 Score=78.05 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=41.8
Q ss_pred CcccchhhHHHHHhhhcccC-------CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 192 SFVGLNSRIEEMKSLMCLES-------HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
.++|.+..++.+...+.... .....+.|+|++|+|||++|+.++..........+.+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 48899999988888775321 1135789999999999999999998775443333343
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.15 E-value=6.3e-06 Score=78.46 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=95.4
Q ss_pred CCCCCCcccchhhHHHHHhhhcc---c-------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCL---E-------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
+...+.++|.+...+++.+.+.. . ....+-+.|+|++|+|||+||+.++......| +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 34456789998888877665421 0 11234588999999999999999998764321 2222 111000
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCC--C
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSD--K 319 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~--~ 319 (555)
. ........+...+.......+.++++|+++.. ...+..++..+. .
T Consensus 84 ~-----------------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 84 M-----------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp S-----------------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred H-----------------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 0 00000111222222333456789999998320 012222322111 1
Q ss_pred CCCCceEEEEeCchhhh-hhc----CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcC-CchHHHH
Q 043805 320 FSPGSRIIITTRDKRVL-DKC----GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADG-NPLALEV 393 (555)
Q Consensus 320 ~~~~~~iliTsR~~~~~-~~~----~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~ 393 (555)
...+..||.||..+..+ ... .....+.++..+.++-.+++...+.......+ .....++..+.| ++--|..
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHH
Confidence 12455667776554321 111 23457888888888888888776522111111 113445666666 5555544
Q ss_pred H
Q 043805 394 L 394 (555)
Q Consensus 394 ~ 394 (555)
+
T Consensus 224 l 224 (257)
T 1lv7_A 224 L 224 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.4e-05 Score=79.37 Aligned_cols=174 Identities=14% Similarity=0.153 Sum_probs=97.6
Q ss_pred CCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc-c
Q 043805 190 LDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN-K 257 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 257 (555)
-+...|-++..++|.+.+.. +-..++-|+++||+|+|||.||+.++......| +.+. ...... .
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHhhccc
Confidence 35688889888888775421 223467899999999999999999998875432 1222 111111 1
Q ss_pred cChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCC--CC
Q 043805 258 MGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSD--KF 320 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~--~~ 320 (555)
.+- -... +...+...-...|++|++|+++.. ...+..++..+. ..
T Consensus 284 vGe---sek~---------------ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 284 VGE---GARM---------------VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp SSH---HHHH---------------HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred CCH---HHHH---------------HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 010 0011 112222333467999999999641 001222222211 11
Q ss_pred CCCceEEEEeCchhh-----hhhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 321 SPGSRIIITTRDKRV-----LDKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 321 ~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
..+..||.||-.+.. .........+.++..+.++-.++|..++........ . ....|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d-v--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG-I--RWELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS-C--CHHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC-C--CHHHHHHHCCCCC
Confidence 245556666654322 222235678999999999999999877632221111 0 1456777777753
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.14 E-value=7.9e-06 Score=78.18 Aligned_cols=50 Identities=28% Similarity=0.223 Sum_probs=35.9
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
+.++|++..+..+.+.+.........+.|+|++|+|||+||+.+++....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 46899999998887766532223356889999999999999999987643
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.14 E-value=1.1e-05 Score=89.41 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=87.2
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCC------CceEEEEechhhccccCh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDF------QGKCFVADVREESNKMGV 260 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 260 (555)
+...+.++||+.+++.+...+... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred hCCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 344567999999999999998643 234578999999999999999998864321 112221100
Q ss_pred HHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchhh-----
Q 043805 261 IHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKRV----- 335 (555)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~----- 335 (555)
+....+.....+...+......++.+|++| .. .+....+.+.+.. ...++|.||.....
T Consensus 245 -----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~-~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 -----------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AA-IDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C---------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred -----------cccccchHHHHHHHHHHHHHhcCCEEEEEc--Cc-hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhh
Confidence 000001122334444444445678999999 22 3334445555442 44566666654331
Q ss_pred -hh-hcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 336 -LD-KCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 336 -~~-~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.. .......+.+++++.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 01133679999999999999998654
No 70
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.13 E-value=2.3e-06 Score=82.09 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=87.2
Q ss_pred CCCCCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCL----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
+.....++|.+...+.|.+.+.. +....+.+.|+|++|+|||+||+.++......|-. +. ......
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~ 82 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE 82 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH
Confidence 34457799999998888876541 11123347899999999999999999876543211 11 000000
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHH----------------HHHHHhcCCCCC
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFT----------------QLENLVGGSDKF 320 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~l~~~~~~~ 320 (555)
.........+...+.......+.+|+||+++.... .+..++..+...
T Consensus 83 -----------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 83 -----------------MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp -----------------SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred -----------------hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 00011112222233344445678999999965110 122333333221
Q ss_pred C---CCceEEEEeCchhhh-----hhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 321 S---PGSRIIITTRDKRVL-----DKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 321 ~---~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
. ....||.||.....+ ........+.+++++.++-.+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1 224566666544221 111223567888899999888887766
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=7e-06 Score=83.37 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=97.9
Q ss_pred CCCCCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhh
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREE 254 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 254 (555)
|...-+.+.|-+...++|.+.+.. +-..++-|.++||||+|||.||+.++......| +.......
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhh
Confidence 334456788999988888775421 223467899999999999999999998875432 22212111
Q ss_pred ccc-cC-hHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-------H--------HHHHHHhcCC
Q 043805 255 SNK-MG-VIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-------F--------TQLENLVGGS 317 (555)
Q Consensus 255 ~~~-~~-~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-------~--------~~~~~l~~~~ 317 (555)
... .+ ....++. .+...-...|++|++|+++.. . ..+..++..+
T Consensus 252 ~~~~vGese~~ir~-------------------lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 252 VQMYIGEGAKLVRD-------------------AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312 (434)
T ss_dssp CSSCSSHHHHHHHH-------------------HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHH-------------------HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence 111 11 0111111 112233357899999999530 0 0122333322
Q ss_pred CCC--CCCceEEEEeCchhhh-----hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC
Q 043805 318 DKF--SPGSRIIITTRDKRVL-----DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN 387 (555)
Q Consensus 318 ~~~--~~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (555)
... ..+..||.||..+..+ ........+.++..+.++-.++|..++..-...... ....|++.+.|+
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~~t~G~ 386 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELARSTDEF 386 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHHHCSSC
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCC
Confidence 221 2445566666544322 111234678899899988888887766332211110 145677777775
No 72
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.8e-05 Score=80.47 Aligned_cols=176 Identities=22% Similarity=0.259 Sum_probs=98.3
Q ss_pred CCCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
..-+.+.|-+...++|.+.+.. +-..++-|.++||||+|||.||+.++......| +.........
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~s 253 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVD 253 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcc
Confidence 3446678999888888775531 223467899999999999999999998875432 2221211111
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCC--C
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSD--K 319 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~--~ 319 (555)
...- --... +...+...-...|++|++|+++.. ...+..++..+. .
T Consensus 254 k~~G--ese~~---------------ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 KYIG--ESARI---------------IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSSS--HHHHH---------------HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ccch--HHHHH---------------HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 1000 00011 111122333467999999999641 011223332221 1
Q ss_pred CCCCceEEEEeCchhhhh-----hcCCCeEEEeecCChHHHHHHHHHHhhccCCC-ChhHHHHHHHHHHHhcCCc
Q 043805 320 FSPGSRIIITTRDKRVLD-----KCGVDNIFEVKGLQHSKALELFCRKAFRQNNR-SHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 320 ~~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~-~~~~~~~~~~i~~~~~G~P 388 (555)
...+..||.||-.+..+. .......+.++..+.++-.++|..++...... ... ...|++.+.|+-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 124556777775443221 11134578888888888888888776332211 111 456777777754
No 73
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.12 E-value=1.9e-05 Score=81.85 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=58.2
Q ss_pred eEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEE---------eC----chhhh-hhcCCCeEEEeecCChHHHHHHHH
Q 043805 296 VLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIIT---------TR----DKRVL-DKCGVDNIFEVKGLQHSKALELFC 360 (555)
Q Consensus 296 ~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliT---------sR----~~~~~-~~~~~~~~~~l~~L~~~ea~~Ll~ 360 (555)
-++++|+++. ..+....|+..+.......-|+.| +. ...+. ........+.+++++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 4999999964 245566676666544444323344 22 11111 112234567999999999999998
Q ss_pred HHhhccCCCChhHHHHHHHHHHHh-cCCchHHHHH
Q 043805 361 RKAFRQNNRSHDLLELSQEVVCYA-DGNPLALEVL 394 (555)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~~~-~G~PLal~~~ 394 (555)
.++..... ....+.+..|+..+ +|.|.....+
T Consensus 377 ~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGI--NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTC--CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCC--CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 87632221 12245667788888 8888755443
No 74
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.5e-05 Score=80.78 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=40.6
Q ss_pred CCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.-+...|-+...++|.+.+.. +-..++-+.++||||+|||.||+.++......
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345678899888888775531 22346779999999999999999999887543
No 75
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.05 E-value=1e-05 Score=72.44 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=33.9
Q ss_pred CCCccc----chhhHHHHHhhhccc-CCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 190 LDSFVG----LNSRIEEMKSLMCLE-SHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 190 ~~~fvG----R~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+.|++ ++..++.+.+++..- ......++|+|++|+|||||++.++..+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445664 344455555444321 12356889999999999999999998875
No 76
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.00 E-value=6.5e-06 Score=66.33 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=55.3
Q ss_pred CCcccEEEcCcccccccchHHHHHHHHHhcCCceeeeccccCCCCcchHHHHHHHhhcceEEEEeccCCccchhhHHHHH
Q 043805 15 QSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPTILKAIETSDISIIIFSKDYAASKWCLNELV 94 (555)
Q Consensus 15 ~~~~dvFiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~ 94 (555)
.++|.+||||+.+| -.+.|...|.+.|+... | ..|+.|+++|++.++....|+||..|+.
T Consensus 2 ~~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 2 TAEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred CceEEEEEecccHh----HHHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 35899999999998 24555555545566433 2 5789999999999999999999999998
Q ss_pred HHHHhHHhcCCEEEEEE
Q 043805 95 KILDCKKINGQIVIPVF 111 (555)
Q Consensus 95 ~~~~~~~~~~~~v~pv~ 111 (555)
.|. +.+.+++-|.
T Consensus 62 ~A~----~~gkpIigV~ 74 (111)
T 1eiw_A 62 LAR----KSSKPIITVR 74 (111)
T ss_dssp HHT----TTTCCEEEEC
T ss_pred HHH----HcCCCEEEEE
Confidence 776 3555566655
No 77
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=4.6e-05 Score=76.52 Aligned_cols=174 Identities=19% Similarity=0.197 Sum_probs=96.1
Q ss_pred CCCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 188 TDLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 188 ~~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
..-+.+.|-++..++|.+.+.. +-..++-|.++||+|+|||.||+.++......| +.........
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhh
Confidence 3446678899888888775431 123367799999999999999999998876432 2221111111
Q ss_pred c-cC-hHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCC-
Q 043805 257 K-MG-VIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSD- 318 (555)
Q Consensus 257 ~-~~-~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~- 318 (555)
. .+ ....++. .+...-...|++|++|+++.. ...+..++..+.
T Consensus 255 k~vGesek~ir~-------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 255 KYLGDGPRLCRQ-------------------IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp SSSSHHHHHHHH-------------------HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHH-------------------HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 1 00 0111111 112233457899999998641 011222322211
Q ss_pred -CCCCCceEEEEeCchhhhh-hc----CCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCC
Q 043805 319 -KFSPGSRIIITTRDKRVLD-KC----GVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGN 387 (555)
Q Consensus 319 -~~~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 387 (555)
....+..||.||-.+..+. .+ .....+.++..+.++-.++|..++......... ....|++.+.|.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv---dl~~LA~~T~Gf 387 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV---NLETLVTTKDDL 387 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC---CHHHHHHHCCSC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCC
Confidence 1124556666775443221 11 233568888888888888888776322211110 145667777765
No 78
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.92 E-value=0.00024 Score=73.29 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=97.5
Q ss_pred CCCCcccchhhHHHHHhhhcc--c--------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL--E--------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM 258 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 258 (555)
....++|.+..++++.+.+.. . ..-++-+.|+|++|+|||+||+.++......| +.+. ........
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHH
Confidence 345689999888777765431 0 11234588999999999999999998764322 2222 11111100
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCCC--CC
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSDK--FS 321 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~~--~~ 321 (555)
... ....+...+.......+.+|+||+++.. ...+..++..+.. ..
T Consensus 90 --~g~---------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 90 --VGV---------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp --TTH---------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred --hcc---------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 000 0011222333444567899999999541 0123333322211 12
Q ss_pred CCceEEEEeCchhhhh-h----cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 322 PGSRIIITTRDKRVLD-K----CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 322 ~~~~iliTsR~~~~~~-~----~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
.+..||.||..+..+. . ......+.+++.+.++-.+++..++......... ....++..+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 4566777776553321 1 1234578899999888888887766322211111 1445788888887
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.82 E-value=4.8e-06 Score=71.54 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=34.6
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 192 SFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++|++..++++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 589999999998887753212234588999999999999998876543
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.80 E-value=8.4e-05 Score=72.09 Aligned_cols=28 Identities=36% Similarity=0.637 Sum_probs=24.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.++.+.|+|++|+|||+||+.+++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568899999999999999999998743
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.80 E-value=6.6e-05 Score=83.02 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=83.9
Q ss_pred CCcccchhhHHHHHhhhcccC-------CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHH
Q 043805 191 DSFVGLNSRIEEMKSLMCLES-------HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHV 263 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 263 (555)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++.........+.+. ...........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468999999988887775221 11236899999999999999999988744333334443 22222111110
Q ss_pred HHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc-HHHHHHHhcCCCC-----------CCCCceEEEEeC
Q 043805 264 RDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG-FTQLENLVGGSDK-----------FSPGSRIIITTR 331 (555)
Q Consensus 264 ~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~l~~~~~~-----------~~~~~~iliTsR 331 (555)
...+...++ .....+|+||+++.. .+....|+..+.. ....+.||+||.
T Consensus 568 ----------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 568 ----------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 111221111 123459999999641 2333333322211 113567888886
Q ss_pred ch-----------------hhhhhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 332 DK-----------------RVLDKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 332 ~~-----------------~~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.. .+... ....+.+++|+.++..+++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 21 11111 23689999999999888887765
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.79 E-value=4.2e-05 Score=83.52 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=96.4
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccC
Q 043805 191 DSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMG 259 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 259 (555)
+...|-+..+++|.+.+.. +-..++-|.++|++|+|||+||+.++...... ++..........
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk-- 277 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSK-- 277 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSS--
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcc--
Confidence 4577888888888776531 11236789999999999999999999876533 222211111100
Q ss_pred hHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc------------HHHHHHHhcCCCCC--CCCce
Q 043805 260 VIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG------------FTQLENLVGGSDKF--SPGSR 325 (555)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~~~~~--~~~~~ 325 (555)
..+.....+...+.......|.+|+||+++.. ...+..|+..+... ..++.
T Consensus 278 ---------------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 278 ---------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---------------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ---------------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 00001111222233444567999999999641 01122333221111 13445
Q ss_pred EEEEeCchhhh-hh----cCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 326 IIITTRDKRVL-DK----CGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 326 iliTsR~~~~~-~~----~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
||.||.....+ .. ......++++..+.++-.++|..++........ -....|+..+.|+-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 55566543221 11 124567899999999888888876522111111 11456778887774
No 83
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.77 E-value=6.2e-05 Score=68.57 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=40.6
Q ss_pred CCCCcccchh----hHHHHHhhhcccCCC--eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 189 DLDSFVGLNS----RIEEMKSLMCLESHD--VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 189 ~~~~fvGR~~----el~~l~~~L~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+.|++... .++.+.+++...... .+.+.|+|++|+|||+||..+++.........+++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456776543 344555555432221 267899999999999999999998766544555554
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.76 E-value=4.2e-05 Score=66.07 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=27.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...++|+|++|+|||+|++.++..........+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 457899999999999999999987754322245544
No 85
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.73 E-value=0.00018 Score=68.06 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=36.3
Q ss_pred CCCCCCcccchhhHHHHHhhhcc-cC---------CCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCL-ES---------HDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~-~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
....+.++|.+....++.+.... .. .-.+-++|+|++|+|||||++.++....
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456788888776666554321 00 1122389999999999999999998764
No 86
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.63 E-value=0.00036 Score=67.02 Aligned_cols=179 Identities=14% Similarity=0.107 Sum_probs=90.7
Q ss_pred CCCCCCCcccchhhHHHHHhhhccc-C---------CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhc
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCLE-S---------HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREES 255 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~~-~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 255 (555)
++...+.++|.+....++.+....- . .-.+-++|+|++|+|||||++.++..... ..+.+. .....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~ 110 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFV 110 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHH
Confidence 3445567899988877776644210 0 11223899999999999999999987652 223332 11100
Q ss_pred cccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCCCC
Q 043805 256 NKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSDKF 320 (555)
Q Consensus 256 ~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~~~ 320 (555)
... . ..... .+...+.......+.++++||++.. ...+..++..+...
T Consensus 111 ~~~-~-~~~~~---------------~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 111 EMF-V-GVGAA---------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp HST-T-THHHH---------------HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred HHH-h-hHHHH---------------HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 000 0 00000 0111111222245789999999430 01122332222111
Q ss_pred --CCCceEEEEeCchhhh-----hhcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 321 --SPGSRIIITTRDKRVL-----DKCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 321 --~~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
.....++.+|..+..+ ........+.++..+.++-.+++...+.......+ .....++..+.|+.
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 1223344455544332 11134567899999999888888776522111111 11345666666665
No 87
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.59 E-value=0.0003 Score=70.87 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+.|+|++|+|||++|+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998773
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.48 E-value=0.0014 Score=68.07 Aligned_cols=178 Identities=14% Similarity=0.127 Sum_probs=93.1
Q ss_pred CCCCCCcccchhhHHHHHhhhcc--c--------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcc
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCL--E--------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESN 256 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 256 (555)
....+.++|.+....++.+.... . -.-.+-++|+|++|+|||+||+.++..... ..+.+. ......
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~ 102 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVE 102 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTS
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHH
Confidence 34456799999887777765431 1 011234899999999999999999987642 223332 111111
Q ss_pred ccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCCCC-
Q 043805 257 KMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSDKF- 320 (555)
Q Consensus 257 ~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~~~- 320 (555)
. .......-+..+.. ..-...+.++++|+++.. ...+..++..+...
T Consensus 103 ~--~~g~~~~~v~~lfq---------------~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 M--FVGVGAARVRDLFE---------------TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp S--CTTHHHHHHHHHTT---------------TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred h--hhhhHHHHHHHHHH---------------HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0 00000111111110 011124689999999531 01223333222211
Q ss_pred -CCCceEEEEeCchhhhh-----hcCCCeEEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhcCCc
Q 043805 321 -SPGSRIIITTRDKRVLD-----KCGVDNIFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYADGNP 388 (555)
Q Consensus 321 -~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 388 (555)
.....++.+|..+..+. .......+.++..+.++-.+++..++........ .....++..+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 12344555565554322 1123457899999999888888766522111111 11445777777776
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.40 E-value=0.00053 Score=66.87 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=39.1
Q ss_pred CCCccc----chhhHHHHHhhhcccCC-CeEEEEEEecCcchhHHHHHHHHHhhh-cCCCceEEEE
Q 043805 190 LDSFVG----LNSRIEEMKSLMCLESH-DVRIVGIWGMGGVGKTTIASVVFHQIS-RDFQGKCFVA 249 (555)
Q Consensus 190 ~~~fvG----R~~el~~l~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 249 (555)
.+.|++ +...++.+.+++..... ....+.|+|++|+|||+||..+++.+. .....+.++.
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345664 33344455555543211 246788999999999999999999876 5544455544
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.38 E-value=0.00052 Score=75.98 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=86.0
Q ss_pred CCCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccc
Q 043805 189 DLDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNK 257 (555)
Q Consensus 189 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 257 (555)
..+.++|.+..+++|.+++.. .-.....++|+|++|+|||+||+.++......| +.+. .......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhh
Confidence 346789999999999887742 123356799999999999999999988764322 2222 1111100
Q ss_pred cChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCc---------------HHHHHHHhcCCCCCCC
Q 043805 258 MGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDG---------------FTQLENLVGGSDKFSP 322 (555)
Q Consensus 258 ~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~l~~~~~~~~~ 322 (555)
. . .... ..+...+.......+.++++|+++.. ...+-.++..... ..
T Consensus 278 ~-~-g~~~---------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~ 339 (806)
T 1ypw_A 278 L-A-GESE---------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp S-T-THHH---------------HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TS
T ss_pred h-h-hhHH---------------HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cc
Confidence 0 0 0000 01112222333456889999999431 0112222222221 13
Q ss_pred CceEEEEeCchhhhh-hc----CCCeEEEeecCChHHHHHHHHHHh
Q 043805 323 GSRIIITTRDKRVLD-KC----GVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 323 ~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
...+|.||..+..+. .. .....+.+...+.++-.+++...+
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 455666665432211 11 233567888889999888888765
No 91
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.29 E-value=0.00069 Score=71.54 Aligned_cols=155 Identities=18% Similarity=0.218 Sum_probs=76.2
Q ss_pred cccchhhHHHHHhhhc----ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHH
Q 043805 193 FVGLNSRIEEMKSLMC----LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVI 268 (555)
Q Consensus 193 fvGR~~el~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 268 (555)
.+|-+.....+...+. ........++|+|++|+|||+||+.++......|- -+. .........+........
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~---~i~-~~~~~~~~~~~g~~~~~i 158 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV---RIS-LGGVRDESEIRGHRRTYV 158 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE---EEC-CCC---------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE---EEE-ecccchhhhhhhHHHHHh
Confidence 6777766666654332 11123568999999999999999999987743321 111 111001000000000000
Q ss_pred HHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcHH-----HHHHHhcCCCCCC---------------CCceEEE
Q 043805 269 SRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGFT-----QLENLVGGSDKFS---------------PGSRIII 328 (555)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~~-----~~~~l~~~~~~~~---------------~~~~ili 328 (555)
......+...+.......+ +++||+++.... ....++..+.... ..+.+|.
T Consensus 159 --------g~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 159 --------GAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred --------ccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 1112222222222222334 888999965111 1233333332100 2345666
Q ss_pred EeCchh-----hhhhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 329 TTRDKR-----VLDKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 329 TsR~~~-----~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
||.... +... ...+.+++++.++-.+++...+
T Consensus 230 ttN~~~~l~~aL~~R---~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDR---MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence 665432 2222 2578999999999998887765
No 92
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.24 E-value=0.00036 Score=77.15 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=37.4
Q ss_pred CCcccchhhHHHHHhhhcccC-------CCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLES-------HDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 358899998888877664211 123478999999999999999999877
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.19 E-value=0.0052 Score=60.78 Aligned_cols=157 Identities=10% Similarity=-0.019 Sum_probs=96.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhc-CCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISR-DFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
-.++..++|+.|.||++.+..+...+.. .|.....+. .. ...++..+...+-. .-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~-------------------~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQA-------------------MSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHHH-------------------HHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhcC-------------------cCC
Confidence 3568999999999999999999887643 333211111 11 12233322222111 112
Q ss_pred ccCceEEEEeCCCC--cHHHHHHHhcCCCCCCCCceEEEEeCc-------hhhhhh-cCCCeEEEeecCChHHHHHHHHH
Q 043805 292 QRIKVLIVLDDVHD--GFTQLENLVGGSDKFSPGSRIIITTRD-------KRVLDK-CGVDNIFEVKGLQHSKALELFCR 361 (555)
Q Consensus 292 ~~~~~LlVlDdv~~--~~~~~~~l~~~~~~~~~~~~iliTsR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~Ll~~ 361 (555)
-+.+-++|+|+++. .....+.|...+....+++.+|+++.. ..+... ......++..+++.++..+.+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 34567889999854 234455555444433467777766643 123333 23557899999999999999988
Q ss_pred HhhccCCCChhHHHHHHHHHHHhcCCchHHHHH
Q 043805 362 KAFRQNNRSHDLLELSQEVVCYADGNPLALEVL 394 (555)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 394 (555)
.+-..+ ....++.+..+++.++|....+...
T Consensus 154 ~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 873322 2233567889999999998877653
No 94
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.16 E-value=0.0058 Score=58.34 Aligned_cols=126 Identities=18% Similarity=0.140 Sum_probs=66.6
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCce
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKV 296 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 296 (555)
++|+|++|+|||||++.++..... ..+.+. ....... .... ....+.. .........+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~~-~~~~-~~~~i~~---------------vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLNM-YVGE-SERAVRQ---------------VFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCSS-TTHH-HHHHHHH---------------HHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHhh-hhhH-HHHHHHH---------------HHHHHHhcCCC
Confidence 899999999999999999987543 223332 1111110 0110 0111111 11111234578
Q ss_pred EEEEeCCCCcH------------HHHHHHhcCCCC--CCCCceEEEEeCchhhhhh-----cCCCeEEEeecCChHHHHH
Q 043805 297 LIVLDDVHDGF------------TQLENLVGGSDK--FSPGSRIIITTRDKRVLDK-----CGVDNIFEVKGLQHSKALE 357 (555)
Q Consensus 297 LlVlDdv~~~~------------~~~~~l~~~~~~--~~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~ 357 (555)
++++|+++... .....++..+.. ......++.+|..+..+.. ......+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 99999996410 011122211110 0123345556655543221 1345778999999999999
Q ss_pred HHHHHh
Q 043805 358 LFCRKA 363 (555)
Q Consensus 358 Ll~~~~ 363 (555)
++....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998765
No 95
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.11 E-value=0.0011 Score=74.08 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHhhhcccC-------CCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 192 SFVGLNSRIEEMKSLMCLES-------HDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.++|.+..++.+...+.... .....+.|+|++|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47999999888887765211 11357899999999999999999987754
No 96
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.95 E-value=0.0017 Score=64.18 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 201 EEMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 201 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..|...|. .+-....++.|.|++|+|||||+.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34444553 22223579999999999999999999987765544566765
No 97
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.83 E-value=0.0022 Score=61.69 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=27.6
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcC--CCceEEEE
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRD--FQGKCFVA 249 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~ 249 (555)
++.|.|++|+|||||+.+++...... -..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999999877654 34566665
No 98
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.83 E-value=0.0014 Score=71.57 Aligned_cols=153 Identities=15% Similarity=0.231 Sum_probs=78.6
Q ss_pred CCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc
Q 043805 190 LDSFVGLNSRIEEMKSLMCL-----------ESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM 258 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 258 (555)
-....|-++..++|.+.+.. +...++-++++|++|+|||.||+.++...... ++. + .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v---~--- 543 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-I---K--- 543 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-C---C---
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-e---c---
Confidence 34567788888888775531 11235568899999999999999999876532 222 1 0
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCCcH---------------HHHHHHhcCCCCC--C
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHDGF---------------TQLENLVGGSDKF--S 321 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~l~~~~~~~--~ 321 (555)
. ..++....+ .+...+...+...-...|++|+||+++... ..+..|+..+... .
T Consensus 544 -~----~~l~s~~vG----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 544 -G----PELLTMWFG----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -H----HHHHTTTCS----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -c----chhhccccc----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 0 011111111 111222223333334579999999996410 0123333222211 1
Q ss_pred CCceEEEEeCchh-----hhhhcCCCeEEEeecCChHHHHHHHHHHh
Q 043805 322 PGSRIIITTRDKR-----VLDKCGVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 322 ~~~~iliTsR~~~-----~~~~~~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.+.-||.||-.+. ++........+.++..+.++-.++|..++
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 3444444554332 22212345678888888877777776665
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.79 E-value=0.00092 Score=64.59 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.+.+.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457789999999999999999986
No 100
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.71 E-value=0.0029 Score=56.52 Aligned_cols=35 Identities=23% Similarity=0.113 Sum_probs=26.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..|.|++..|.||||+|...+.+...+.-.+.++.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45667777779999999999988766655555554
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.67 E-value=0.0039 Score=57.12 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=25.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++.|.|++|+|||||+.+++. .....++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 45899999999999999999988 2223555654
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.62 E-value=0.031 Score=49.38 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++|.|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 103
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.61 E-value=0.0034 Score=62.44 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=29.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++.|.|++|+|||+||.+++.........++|+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 458899999999999999999987765545677766
No 104
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.54 E-value=0.0059 Score=57.16 Aligned_cols=42 Identities=19% Similarity=0.050 Sum_probs=29.6
Q ss_pred hhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 197 NSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 197 ~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+.++.+.+......+..|+|+|++|+||||+++.+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444433223346789999999999999999998765
No 105
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.53 E-value=0.0027 Score=60.14 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=61.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
...+++|+|+.|+|||||++.++..+...+...+++....-......... + ......+.....+...+.+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~----~---v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS----I---VNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS----E---EEEEEBTTTBSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce----e---eeHHHhCCCHHHHHHHHHHHHh
Confidence 34689999999999999999998766543234444431100000000000 0 0000001122345667778888
Q ss_pred cCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 293 RIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
..|=+|++|+..+ .+....++... ..|..|++|+-..
T Consensus 97 ~~p~illlDEp~D-~~~~~~~l~~~---~~g~~vl~t~H~~ 133 (261)
T 2eyu_A 97 EDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTN 133 (261)
T ss_dssp HCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEECCS
T ss_pred hCCCEEEeCCCCC-HHHHHHHHHHH---ccCCEEEEEeCcc
Confidence 8889999999975 55554444322 1455677777654
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.51 E-value=0.0034 Score=62.27 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=63.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEE-EEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCF-VADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
...++|+|+.|+|||||++.++..+.......++ +.+..+....... .. ................+.+.|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-----~~---v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-----CL---VNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-----SE---EEEEEBTTTBSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-----cc---eeeeeeccccCCHHHHHHHHhh
Confidence 3589999999999999999998776543222332 2211000000000 00 0000001122345667889999
Q ss_pred cCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCchh
Q 043805 293 RIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRDKR 334 (555)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 334 (555)
..|=+|++|+..+ .+....+..... .|..+|+|+-...
T Consensus 195 ~~PdvillDEp~d-~e~~~~~~~~~~---~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 195 EDPDIILVGEMRD-LETIRLALTAAE---TGHLVFGTLHTTS 232 (356)
T ss_dssp SCCSEEEESCCCS-HHHHHHHHHHHH---TTCEEEEEESCSS
T ss_pred hCcCEEecCCCCC-HHHHHHHHHHHh---cCCEEEEEEccCh
Confidence 9999999999986 666555444321 4556788877543
No 107
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.50 E-value=0.0096 Score=51.42 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=63.5
Q ss_pred cccccccchHHHHHHHHHhcCCceeeeccccC-------C-CCcchHHHHHHHhhcceEEEEeccCCccchhhHHHHHHH
Q 043805 25 RGEDTRNGFTSHLAAALHRKQIQFFIDDEELK-------K-GDEISPTILKAIETSDISIIIFSKDYAASKWCLNELVKI 96 (555)
Q Consensus 25 ~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~-------~-g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~ 96 (555)
+.+|. .....|...-.....--|.|.++.. . -+.|...+.+.|..|+.+|+++|++...|.|..+|+..+
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 55665 5667777777776666677765442 2 346888899999999999999999999999999999888
Q ss_pred HHhHHhcCCEEEEEEee
Q 043805 97 LDCKKINGQIVIPVFYQ 113 (555)
Q Consensus 97 ~~~~~~~~~~v~pv~~~ 113 (555)
+. ..+.+||-|..+
T Consensus 105 i~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPD 118 (189)
T ss_dssp TT---TTCCCEEEEETT
T ss_pred HH---hcCCcEEEEECC
Confidence 83 344567776643
No 108
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.46 E-value=0.0041 Score=56.35 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=33.7
Q ss_pred chhhHHHHHhhhcc-cCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 196 LNSRIEEMKSLMCL-ESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 196 R~~el~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
|++.++.|.+.+.. ......+++|+|++|+|||||++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 55566777665542 2234679999999999999999999886643
No 109
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.44 E-value=0.014 Score=57.65 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=28.7
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhc------CCCceEEEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISR------DFQGKCFVA 249 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 249 (555)
....++.|+|++|+|||+|+.+++..... .-..++|+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34579999999999999999999986432 223556665
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.44 E-value=0.0017 Score=59.70 Aligned_cols=111 Identities=19% Similarity=0.013 Sum_probs=57.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCC---CCCchhHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKI---GTPTIPQNIRK 289 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~~~l~~~l~~ 289 (555)
...+++++|++|+||||++.+++++...+...+..+....... +. ..++..++...... ....+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SI----RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---GC----SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---HH----HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 3578999999999999999999998866544444443111110 00 01111111111111 11123333333
Q ss_pred Hhcc-CceEEEEeCCCCc-HHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 290 RLQR-IKVLIVLDDVHDG-FTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 290 ~l~~-~~~LlVlDdv~~~-~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
.+.+ +.-+|++|.+... .+.++.+..... .+..||+|.+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 3322 3559999999531 234333322111 367899998843
No 111
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.41 E-value=0.0089 Score=59.10 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...++.|.|++|+|||||+.+++......-..++|+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3568999999999999999999987665545566765
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.40 E-value=0.0059 Score=56.83 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=27.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc------CCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR------DFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 249 (555)
..++.|.|++|+|||||+..++..... .....+|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 468999999999999999999985322 124566665
No 113
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.35 E-value=0.005 Score=60.99 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=29.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++.|.|++|+||||||.+++.........++|+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468999999999999999999987765545667766
No 114
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.35 E-value=0.003 Score=57.45 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=46.6
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEe---chhh-ccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVAD---VREE-SNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL 291 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l 291 (555)
+|.|.|+||+||||.|..+++.+. ...+.. ++.. .....+.......+. ...-++.+.+...+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~----~G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYME----RGELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHH----HTCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHh----cCCcCCHHHHHHHHHHhh
Confidence 477899999999999999987652 223321 0000 001111111111111 111123334555666777
Q ss_pred ccCceEEEEeCCCCcHHHHHHH
Q 043805 292 QRIKVLIVLDDVHDGFTQLENL 313 (555)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~~~~l 313 (555)
..... +|||.+-....+.+.|
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHH
Confidence 65554 7899995546666555
No 115
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.32 E-value=0.0029 Score=62.30 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 46899999999988877532 35889999999999999999987654
No 116
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.31 E-value=0.0098 Score=58.01 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=29.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...++.|.|.+|+|||+|+.+++.....+...++|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3468999999999999999999987655445566654
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.25 E-value=0.0038 Score=56.91 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=30.2
Q ss_pred hHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 199 RIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 199 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.+++|.+.+........+++|.|++|+|||||++.++..+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344444444322345679999999999999999999887653
No 118
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.25 E-value=0.002 Score=56.92 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+|.|+|++|+||||+++.++..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 119
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.20 E-value=0.0027 Score=62.90 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 186 NSTDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 186 ~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
++...+.++|.+...+.+...+... ...-+.|+|++|+|||+||+.+++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3444567999988666554433221 122488999999999999999998764
No 120
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.20 E-value=0.01 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...++|.|.|+||+||||.|..++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 121
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.17 E-value=0.0034 Score=62.64 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=35.1
Q ss_pred cccchhhHHHHHhhhc-------------ccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 193 FVGLNSRIEEMKSLMC-------------LESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 193 fvGR~~el~~l~~~L~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
++|.+..++.+...+. ......+.+.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6788877777776662 1111345689999999999999999998773
No 122
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.99 E-value=0.08 Score=52.70 Aligned_cols=49 Identities=29% Similarity=0.334 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..++|....+.++...+..-......+.|+|.+|+||+.+|+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 4688988888877776642222234577999999999999998776543
No 123
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.87 E-value=0.0044 Score=54.25 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.8
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+|+|.|++|+||||+++.++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 124
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.85 E-value=0.0083 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..|+|.|++|+||||+++.++..+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999887643
No 125
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.85 E-value=0.0081 Score=57.74 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.5
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
...+.+|+|.|++|+|||||++.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999999887654
No 126
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.84 E-value=0.0029 Score=56.45 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
|.|+|+||+|+|||||++.+.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4688999999999999999987654443
No 127
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.79 E-value=0.076 Score=54.37 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=35.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEEechhhccccChHHHHHHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVADVREESNKMGVIHVRDEVISRV 271 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 271 (555)
...++.|.|.+|+|||+|+.+++..+... -..++|+. + ..+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l-----E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L-----EMPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S-----SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C-----CCCHHHHHHHHHHHH
Confidence 34689999999999999999999877643 33455554 1 223345555555443
No 128
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.78 E-value=0.0096 Score=53.01 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
....++|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999887643
No 129
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.78 E-value=0.0051 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEEecCcchhHHHHHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.+|+|.|++|+||||+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 130
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.77 E-value=0.097 Score=53.73 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=28.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
..++.|.|.+|+|||||+.+++..+... ...+.|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4689999999999999999999877643 33455554
No 131
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.77 E-value=0.16 Score=50.85 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=34.3
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 192 SFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.++|....++++.+.+..-......|.|+|.+|+|||.+|+.+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 57888888888877665322222346899999999999998877654
No 132
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.76 E-value=0.0093 Score=53.87 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=24.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+++|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998775
No 133
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.72 E-value=0.029 Score=54.91 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=35.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRV 271 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 271 (555)
..++.|.|.+|+|||+|+.+++..+...-..+.|+. .......+...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHh
Confidence 458999999999999999999987665444555554 1233444455554443
No 134
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.70 E-value=0.0076 Score=60.23 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=60.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
....++|+|+.|+|||||+..++..+.......+.+..- .. . ... ............+.....+...+...+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~-e-~~~----~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PI-E-YVF----KHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SC-C-SCC----CCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cH-h-hhh----ccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 356899999999999999999988765432333332210 00 0 000 0000000000001123345667778888
Q ss_pred cCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043805 293 RIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRD 332 (555)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~ 332 (555)
..+-+|++|+..+ .+.+..++... ..|..++.|+-.
T Consensus 208 ~~pd~illdE~~d-~e~~~~~l~~~---~~g~~vi~t~H~ 243 (372)
T 2ewv_A 208 EDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHT 243 (372)
T ss_dssp SCCSEEEESCCCS-HHHHHHHHHHH---TTTCEEEECCCC
T ss_pred hCcCEEEECCCCC-HHHHHHHHHHH---hcCCEEEEEECc
Confidence 8899999999976 55554444332 134456666654
No 135
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.69 E-value=0.0052 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+.|+|+|++|+||||+++.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 136
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.66 E-value=0.0057 Score=63.45 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=37.2
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 192 SFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++|++..++.+...+..+ .-+.|+|++|+|||+||+.++....
T Consensus 23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 5899999999888776532 3688999999999999999998764
No 137
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.65 E-value=0.0071 Score=54.07 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+..|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998866
No 138
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.62 E-value=0.032 Score=58.25 Aligned_cols=37 Identities=8% Similarity=-0.072 Sum_probs=29.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
...++.|.|.+|+|||+|+.+++...... -..+.|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 34689999999999999999999887654 34566654
No 139
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.61 E-value=0.0061 Score=55.03 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...|+|.|++|+||||+++.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998763
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.56 E-value=0.0073 Score=56.35 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=28.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++.|.|++|+|||||+.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999999877655444566654
No 141
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.54 E-value=0.0089 Score=53.64 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=30.4
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.-+..|..++.. -+..+.+.|+|++|+|||++|..+++.+.
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346666666652 22234689999999999999999998764
No 142
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.54 E-value=0.025 Score=57.82 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=29.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...++.|.|.+|+|||+||.+++.........+.|+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3468999999999999999999987765534455553
No 143
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.51 E-value=0.0069 Score=53.03 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=18.6
Q ss_pred EEEEEEecCcchhHHHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVV 234 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~ 234 (555)
.+|+|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 144
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.49 E-value=0.0075 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999865
No 145
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.46 E-value=0.02 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=18.9
Q ss_pred EEEEEecCcchhHHHHHHHHHh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
+.+|+|.+|+|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999886544
No 146
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.44 E-value=0.0061 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987654
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.42 E-value=0.012 Score=56.52 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.++.|.|++|+||||+++.++...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.42 E-value=0.0074 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=23.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..|+|.|++|+||||+++.++..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987754
No 149
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.35 E-value=0.0085 Score=53.12 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++++|.|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999987654
No 150
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.32 E-value=0.017 Score=52.44 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...|+|.|++|+||||+++.++..+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3689999999999999999999877644
No 151
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.31 E-value=0.0095 Score=56.10 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+++|.|++|+||||||..++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988653
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.30 E-value=0.012 Score=54.32 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=27.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+++|.|++|+|||||+..++......-..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999999976554333455543
No 153
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.30 E-value=0.009 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+.|+|+|++|+||||+++.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 154
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.28 E-value=0.0076 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.|+|+|++|+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998775
No 155
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.28 E-value=0.01 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+..|+|.|++|+||||+++.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998765
No 156
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.28 E-value=0.01 Score=55.77 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
....+|+|+|++|+||||+|+.++..+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 157
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.26 E-value=0.012 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...|+|.|++|+||||+++.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 158
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.25 E-value=0.013 Score=51.58 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=22.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|+|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 159
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.25 E-value=0.0088 Score=54.42 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+++|+|++|+|||||++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987654
No 160
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.22 E-value=0.0082 Score=54.28 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=22.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+|+|.|++|+||||+++.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 161
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.21 E-value=0.0098 Score=53.70 Aligned_cols=25 Identities=44% Similarity=0.524 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|++|+|||||++.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998766
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.21 E-value=0.0076 Score=53.36 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=18.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...|+|+|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987654
No 163
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.20 E-value=0.015 Score=52.82 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=24.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+..|+|+|++|+||||+++.++..+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877544
No 164
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.19 E-value=0.011 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...|+|.|++|+||||+++.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 165
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.19 E-value=0.0079 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++++|.|++|+|||||++.++....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988763
No 166
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.19 E-value=0.012 Score=53.06 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
....|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998764
No 167
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.17 E-value=0.0086 Score=53.38 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
++++|.|+.|+|||||++.++......
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 478999999999999999999776533
No 168
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.14 E-value=0.011 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+|+|.|++|+||||+++.++..+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988764
No 169
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.12 E-value=0.0082 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+|+|+|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988754
No 170
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.11 E-value=0.018 Score=50.24 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+++.|.|+.|+|||||+..++..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4689999999999999999999887654
No 171
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.10 E-value=0.072 Score=53.94 Aligned_cols=36 Identities=25% Similarity=0.123 Sum_probs=28.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
.+.++.++|++|+||||++..++..+......+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998776654334343
No 172
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.10 E-value=0.032 Score=55.35 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+...+........+|+|+|.+|+|||||+..++..+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3333333333456799999999999999999998876544
No 173
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.09 E-value=0.012 Score=54.92 Aligned_cols=36 Identities=28% Similarity=0.179 Sum_probs=26.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh-hcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI-SRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~ 249 (555)
..++.|.|.+|+|||+||.+++... ......++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 4689999999999999999988654 33333455543
No 174
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.09 E-value=0.023 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+++|.|++|+|||||++.++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357999999999999999999987543
No 175
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.07 E-value=0.029 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.4
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhc
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999987754
No 176
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.07 E-value=0.013 Score=52.16 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+|+|+|++|+||||+++.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 177
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.06 E-value=0.01 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|+|.|++|+||||+++.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 178
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.05 E-value=0.012 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999876
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.01 E-value=0.01 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..|+|+|++|+||||+++.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 180
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.01 E-value=0.014 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=22.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+..|+|+|++|+||||+++.++..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 181
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.98 E-value=0.026 Score=67.26 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=30.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+.+.|+|++|+|||+||.+++.....+-..+.|+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3568999999999999999999988776655667765
No 182
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.98 E-value=0.013 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.8
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|+|.|++|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998764
No 183
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.97 E-value=0.013 Score=52.62 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..++++|+|++|+|||||++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987654
No 184
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.94 E-value=0.013 Score=53.20 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=24.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...|+|+|++|+||||+++.++..+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 185
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.93 E-value=0.11 Score=52.78 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=29.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
.+++|.++|.+|+||||++..++..+... ...+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46899999999999999999999887765 33444443
No 186
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.93 E-value=0.056 Score=51.98 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=27.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhc-CCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISR-DFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~ 249 (555)
...+++|+|++|+||||++..++..+.. ....+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3568999999999999999999987764 332344443
No 187
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.91 E-value=0.013 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.90 E-value=0.013 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988763
No 189
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.90 E-value=0.017 Score=52.51 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
No 190
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.90 E-value=0.015 Score=54.96 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 191
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.89 E-value=0.062 Score=54.47 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=28.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCF 247 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 247 (555)
.+.+|.++|++|+||||++..++..+......+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999877665333333
No 192
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.86 E-value=0.021 Score=55.44 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=34.3
Q ss_pred cccchhhHHHHHhhhccc--CCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 193 FVGLNSRIEEMKSLMCLE--SHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
++|-...+..+...+... ...+.+++|.|+.|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 566666666665544322 34467999999999999999999887665
No 193
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.85 E-value=0.06 Score=53.17 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=24.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
.+.++|.|++|+|||||+..+++.+...+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 45789999999999999999988765443
No 194
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.85 E-value=0.017 Score=52.05 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....+|+|+|++|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 195
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.84 E-value=0.06 Score=54.77 Aligned_cols=32 Identities=31% Similarity=0.641 Sum_probs=25.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKC 246 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 246 (555)
+.++|.|++|+|||+|+..++.....++...+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 35889999999999999999987665443333
No 196
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.83 E-value=0.015 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.5
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.|+|+|++|+||||+++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988664
No 197
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.83 E-value=0.028 Score=49.57 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
...++|+|+.|+||||+++.++..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999887643
No 198
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.82 E-value=0.017 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 199
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.77 E-value=0.015 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|++|+|||||++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 200
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.76 E-value=0.016 Score=51.71 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.3
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhc
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.|+|+|++|+||||+++.++..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999987743
No 201
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.73 E-value=0.016 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|+|+|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 202
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.69 E-value=0.017 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 203
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.69 E-value=0.018 Score=52.14 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+++|+|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999988654
No 204
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.65 E-value=0.018 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+.++.|.|++|+||||+++.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988764
No 205
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.62 E-value=0.024 Score=55.60 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
+....+.|.|++|+||||+++.++..+..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34567899999999999999999886643
No 206
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.61 E-value=0.017 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...|+|.|++|+||||+++.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998765
No 207
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.60 E-value=0.018 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|+|+|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 208
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.60 E-value=0.046 Score=53.38 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=25.8
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..+.+++|.|+.|+||||++..++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999876654
No 209
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.57 E-value=0.016 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.9
Q ss_pred eEEEEEEecCcchhHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVV 234 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~ 234 (555)
..+++|.|++|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999964
No 210
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.55 E-value=0.039 Score=50.39 Aligned_cols=34 Identities=24% Similarity=-0.041 Sum_probs=26.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
-.|.+.|.||+||||++..++..+......+.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 3578999999999999999998876654344443
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.55 E-value=0.028 Score=55.01 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=27.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC------CCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD------FQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 249 (555)
..++.|+|++|+|||+|+.+++...... -..++|+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4689999999999999999999865432 23556665
No 212
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.54 E-value=0.048 Score=53.05 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=28.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
...+++|+|++|+||||++..++..+......+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998776553334443
No 213
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.54 E-value=0.022 Score=60.99 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=41.4
Q ss_pred CCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 187 STDLDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 187 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
|...+.++|.+..++.+...+..+ ..++|+|++|+||||||+.++..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 344467899999999888887633 478999999999999999999876544
No 214
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.54 E-value=0.017 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...|+|.|++|+||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998876
No 215
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.53 E-value=0.018 Score=53.76 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+..++|.|++|+|||||++.+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997653
No 216
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.52 E-value=0.019 Score=51.79 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEecCcchhHHHHHHHHH
Q 043805 216 IVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.|+|+|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 217
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.52 E-value=0.014 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.3
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhc
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
+|+|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 218
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.51 E-value=0.033 Score=54.12 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
++.++|+|+|=||+||||.+..++..+......+..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35789999999999999999999988776655555554
No 219
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.47 E-value=0.017 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 220
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.43 E-value=0.12 Score=54.68 Aligned_cols=33 Identities=24% Similarity=0.111 Sum_probs=26.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKC 246 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 246 (555)
.+.+.|+|++|+||||++..++..+......+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 368899999999999999999887665433333
No 221
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.43 E-value=0.027 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+|+|+|+.|+||||+++.++..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998763
No 222
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.43 E-value=0.041 Score=50.39 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=29.3
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
+..+.+...+.. .....|+|.|.+|+|||||+..++......
T Consensus 24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444444431 245788899999999999999999875443
No 223
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.42 E-value=0.02 Score=51.08 Aligned_cols=25 Identities=32% Similarity=0.170 Sum_probs=22.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.|+|.|++|+|||+||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998764
No 224
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.41 E-value=0.025 Score=57.37 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=33.2
Q ss_pred CcccchhhHHHHHhhhcc------------cCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 192 SFVGLNSRIEEMKSLMCL------------ESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..+|.+...+.|...+.. .....+-+.++|++|+|||++|+.++..+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 356666666666544311 0012356889999999999999999987643
No 225
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.39 E-value=0.085 Score=51.59 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=50.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRI 294 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~ 294 (555)
..++|+|+.|+|||||++.++..+... .+.+.+......... ... ..+. +.. + +.......+...+..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~~----~~i~-~~~---g-gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HHK----NYTQ-LFF---G-GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SCS----SEEE-EEC---B-TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cch----hEEE-EEe---C-CChhHHHHHHHHhhhC
Confidence 479999999999999999988765432 455555432111000 000 0000 000 0 2234455677888889
Q ss_pred ceEEEEeCCCCcHHHHH
Q 043805 295 KVLIVLDDVHDGFTQLE 311 (555)
Q Consensus 295 ~~LlVlDdv~~~~~~~~ 311 (555)
|-+|++|+... .+..+
T Consensus 241 p~ilildE~~~-~e~~~ 256 (330)
T 2pt7_A 241 PDRIILGELRS-SEAYD 256 (330)
T ss_dssp CSEEEECCCCS-THHHH
T ss_pred CCEEEEcCCCh-HHHHH
Confidence 99999999976 44444
No 226
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.39 E-value=0.019 Score=52.55 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.7
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..|+|.|++|+||||+++.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.38 E-value=0.034 Score=53.75 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=27.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...+++|.|++|+|||||+..++...... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45699999999999999999999876654 3344443
No 228
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.37 E-value=0.043 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
-.++|.|++|+||||++..++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
No 229
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.37 E-value=0.032 Score=52.36 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+..+..++....+....+.|+|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 445666775332334579999999999999999998754
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.35 E-value=0.026 Score=51.28 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999988765
No 231
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.34 E-value=0.024 Score=52.82 Aligned_cols=36 Identities=28% Similarity=0.187 Sum_probs=25.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh-cCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS-RDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 249 (555)
..+++|.|++|+|||||++.++.... .....++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46899999999999999999985322 2223445543
No 232
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.34 E-value=0.034 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.030 Sum_probs=22.7
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+++|+|+.|+||||++.+.+++....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 478899999999999998888776443
No 233
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.34 E-value=0.021 Score=51.59 Aligned_cols=22 Identities=50% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEEEecCcchhHHHHHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.+++|+|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 234
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.34 E-value=0.037 Score=50.50 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=30.6
Q ss_pred hhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 197 NSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 197 ~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
++..+.+...+.. ...+.++|.|.+|+|||||+..++......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444444432 245789999999999999999999876544
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.34 E-value=0.017 Score=52.09 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=21.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+.++|.|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999987553
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.33 E-value=0.04 Score=53.27 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
...+++|+|++|+||||++..++..+......+.++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 467999999999999999999998776543333443
No 237
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.23 E-value=0.059 Score=51.87 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=28.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++++.|++|+||||++..++..+......+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999987765543444443
No 238
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.20 E-value=0.077 Score=48.29 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...|+|.|+.|+||||++..++..+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999888654
No 239
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.19 E-value=0.3 Score=46.50 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=26.2
Q ss_pred CCC--cchHHHHHHHhhcceEEEEeccCCccchhhHHHHHHHH
Q 043805 57 KGD--EISPTILKAIETSDISIIIFSKDYAASKWCLNELVKIL 97 (555)
Q Consensus 57 ~g~--~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~ 97 (555)
||. .....+.+.+++++++|.|+...--.+..+ .++...+
T Consensus 7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 553 355788899999999999998765544444 2444443
No 240
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.18 E-value=0.027 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.++++|.||.|+|||+|+..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3688999999999999999998765
No 241
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.17 E-value=0.17 Score=51.31 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=33.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCC-CceEEEEechhhccccChHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDF-QGKCFVADVREESNKMGVIHVRDEVIS 269 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~ll~ 269 (555)
.+.++|.|.+|+|||+|+.++++.+.... +..++.- +. ........++..+..
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iG--ER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VG--ERTREGNDLYHEMIE 206 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ES--CCHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CC--CcchHHHHHHHHhhh
Confidence 35789999999999999999998765433 3333332 21 222334445555543
No 242
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.17 E-value=0.046 Score=49.16 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=27.3
Q ss_pred EEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.|+|-|.-|+||||.++.+++.+......+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999999998877654555443
No 243
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.15 E-value=0.03 Score=52.32 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+++|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999988755
No 244
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.12 E-value=0.054 Score=63.79 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=35.2
Q ss_pred HHHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 201 EEMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 201 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..|..+|. .+-...+++.|.|++|+|||+||.+++.........++|+.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 34444553 11123568999999999999999999987766655677765
No 245
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.10 E-value=0.032 Score=53.53 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=23.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..++++|.|+.|+|||+|+..++..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999875
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.10 E-value=0.024 Score=51.97 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=23.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+++|.|+.|+|||||++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987654
No 247
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.08 E-value=0.026 Score=54.97 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=23.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.++|+|.|+.|+|||+|+..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998653
No 248
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.06 E-value=0.028 Score=52.77 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+|+|.|+.|+||||+++.++..+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999997764
No 249
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.05 E-value=0.018 Score=55.35 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+|+|+|+.|+||||+++.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.05 E-value=0.029 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.7
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 251
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.04 E-value=0.03 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998866
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.98 E-value=0.063 Score=49.49 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999999988765
No 253
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.97 E-value=0.031 Score=50.47 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.9
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+|+|+|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988664
No 254
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.96 E-value=0.03 Score=54.25 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
++++|+|++|+|||||+..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 255
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.94 E-value=0.03 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 256
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.94 E-value=0.027 Score=51.05 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+++|.|+.|+|||||++.++....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 257
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.93 E-value=0.045 Score=52.66 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=27.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCC-ceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQ-GKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 249 (555)
..+++|.|++|+|||||+..++..+..... .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 458999999999999999999987764422 344543
No 258
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.92 E-value=0.034 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
...+|+|+|++|+||||+++.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.90 E-value=0.036 Score=47.87 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+++|.|+.|+|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998866
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.88 E-value=0.11 Score=61.32 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=29.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++.|.|++|+||||||.+++......-..+.|+.
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 468999999999999999999988765544566654
No 261
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.86 E-value=0.051 Score=47.72 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.++++|+|+.|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999987654
No 262
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.85 E-value=0.024 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998755
No 263
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.85 E-value=0.036 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
..+|+|+|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 264
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.84 E-value=0.037 Score=53.73 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
....+++|.|+.|+|||||++.++..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34679999999999999999999876643
No 265
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.82 E-value=0.12 Score=61.86 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHhhhc-ccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 200 IEEMKSLMC-LESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 200 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...|...|. .+=....++.|.|++|+|||+||.+++.........++|+.
T Consensus 368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344555553 11123568999999999999999999988776555666665
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.81 E-value=0.034 Score=51.33 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+.+++|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987763
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.79 E-value=0.054 Score=52.28 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...+++|.|+.|+||||++..++..+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999876543
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.79 E-value=0.059 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...++.|.|++|+|||||+.+++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 269
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.77 E-value=0.036 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..|+|.|++|+||||+++.++..+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 270
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.71 E-value=0.048 Score=56.44 Aligned_cols=48 Identities=2% Similarity=-0.013 Sum_probs=35.0
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 193 FVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..-|.+..+.+.+..........+|.+.|++|+||||+++.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 445555566666655322233578999999999999999999998864
No 271
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.68 E-value=0.8 Score=42.17 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=30.3
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 192 SFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 192 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.-|+.+.+.+..++.. + -+.|+|+.|.|||.++..++...
T Consensus 91 ~~~l~~~Q~~ai~~~~~~---~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVD---K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCCHHHHHHHHHHTTT---S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHhC---C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 344566666666666542 1 27799999999999999888765
No 272
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.63 E-value=0.072 Score=51.57 Aligned_cols=28 Identities=36% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
....+++|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987665
No 273
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.60 E-value=0.069 Score=54.50 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=26.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC-CCceEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD-FQGKCFV 248 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 248 (555)
.+.++|.|.+|+|||+|+.++++.+... -+..+|.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 4568899999999999999999986543 3344444
No 274
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.58 E-value=0.07 Score=50.11 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=26.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
..++.+.|.||+|||||+..++..+. ....+..+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 57888999999999999999998776 43333333
No 275
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.55 E-value=0.033 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
++++|+|+.|+|||||+..+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 478999999999999999998876543
No 276
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.54 E-value=0.094 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...++.|+|++|+|||+||.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998753
No 277
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.50 E-value=0.17 Score=49.97 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=23.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+.++|.|++|+|||+|+.++++.+...
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 3578899999999999999999876543
No 278
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.49 E-value=0.094 Score=48.49 Aligned_cols=28 Identities=29% Similarity=0.537 Sum_probs=24.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...|+|.|+.|+||||++..++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999887654
No 279
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.49 E-value=0.11 Score=46.97 Aligned_cols=111 Identities=17% Similarity=0.089 Sum_probs=53.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
...+.+++|+.|.||||.+...+++.......+..+..... ...+. ..+...++............ .+.+.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge----~~i~s~~g~~~~a~~~~~~~-~~~~~~~ 99 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSE----EDVVSHNGLKVKAVPVSASK-DIFKHIT 99 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSGG-GGGGGCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchH----HHHHhhcCCeeEEeecCCHH-HHHHHHh
Confidence 35788999999999999999999887655444444431111 11111 12223322211111111111 1112222
Q ss_pred cCceEEEEeCCCC-cHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043805 293 RIKVLIVLDDVHD-GFTQLENLVGGSDKFSPGSRIIITTRDK 333 (555)
Q Consensus 293 ~~~~LlVlDdv~~-~~~~~~~l~~~~~~~~~~~~iliTsR~~ 333 (555)
+.--+|++|.+.- +.+.++.+....+ .+..||+|.++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 3334999999833 1234433322111 467899999854
No 280
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.48 E-value=0.04 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.+|.|.|++|+||||+++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.47 E-value=0.069 Score=50.87 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
..++.|.|++|+|||||+.+++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999999876543
No 282
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.47 E-value=0.029 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..|+|.|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998664
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.43 E-value=0.061 Score=54.03 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=25.4
Q ss_pred HHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 202 EMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 202 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.|..+|..+-....++.|.|++|+|||||+.+++..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 344444322123468999999999999999988744
No 284
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.41 E-value=0.026 Score=52.11 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=16.4
Q ss_pred eEEEEEEecCcchhHHHHHHHH-Hhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVF-HQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 238 (555)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 285
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.41 E-value=0.11 Score=47.29 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=24.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
..|++.|+.|+||||++..+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999887654
No 286
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.41 E-value=0.046 Score=49.27 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=20.6
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 190 LDSFVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...--++....+.+.+.... ...-.|+|.|.+|+|||||+..+...
T Consensus 8 ~~~~~~~~~~~~~m~~~~~~--~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 8 HHHSSGLVPRGSHMENLYFQ--GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccccCCcccchhHHHhHhhc--CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 33344445555555544332 23356789999999999999998863
No 287
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.35 E-value=0.052 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.+.++|.|++|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357889999999999999999874
No 288
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.34 E-value=0.084 Score=48.51 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=21.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999887654
No 289
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.33 E-value=0.1 Score=47.74 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999988765
No 290
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.29 E-value=0.046 Score=55.58 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=27.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
+++|+|+|++|+||||++..++..+......+.++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 56899999999999999999998776543334443
No 291
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.28 E-value=0.075 Score=51.38 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=29.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++|+|+|-||+||||++..++..+......+..+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678888899999999999999998776644455544
No 292
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.20 E-value=0.04 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+.+|.|+|++|+||||+|+.++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999988765
No 293
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.18 E-value=0.078 Score=55.60 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=32.5
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 193 FVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
.+.+....+.+.......-....+++|.|+.|+|||||++.++..+...
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 3344444444444332111235789999999999999999999887643
No 294
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.18 E-value=0.071 Score=54.87 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQ 243 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 243 (555)
+.+.|.|++|+|||+++..++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38899999999999999999987765543
No 295
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.17 E-value=0.088 Score=49.68 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=27.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
++|+|.|-||+||||++..++..+......+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 46778999999999999999998876544455544
No 296
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.15 E-value=0.075 Score=52.46 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...+++|.|+.|+||||++..++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 46799999999999999999999876543
No 297
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.11 E-value=0.14 Score=49.85 Aligned_cols=36 Identities=33% Similarity=0.389 Sum_probs=29.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++...|-||+||||+|..++..+......+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 578888999999999999999998876644555554
No 298
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.04 E-value=0.088 Score=50.59 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=27.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
...+++|+|++|+||||++..++..+......+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 357889999999999999999998776543333333
No 299
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.99 E-value=0.059 Score=50.05 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+..|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998764
No 300
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.98 E-value=0.071 Score=53.05 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998754
No 301
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.98 E-value=0.059 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
++|+|.|+.|+|||+|+..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5889999999999999999998764
No 302
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.94 E-value=0.12 Score=54.36 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=33.9
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 193 FVGLNSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 193 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
.+-|.+..+.+.+..........+|.++|++|+||||+++.+...+..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 444555555666655322233578999999999999999999987654
No 303
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.93 E-value=0.13 Score=50.46 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.0
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
....+++|.|.+|+|||||+..++..+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999998766543
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.88 E-value=0.049 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEEEecCcchhHHHHHHHHHhhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+++|.|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999987654
No 305
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.86 E-value=0.083 Score=54.14 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=28.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...+++|.|+.|+|||||+..++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999999877644 3444443
No 306
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.81 E-value=0.12 Score=53.45 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=26.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFV 248 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 248 (555)
.+++|+|+|.+|+||||++..++..+...-..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 467899999999999999999998776543333443
No 307
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.79 E-value=0.11 Score=54.80 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
...+|.|+|++|+||||+|+.+...+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4578999999999999999999988753
No 308
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.76 E-value=0.15 Score=50.24 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 211 SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 211 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.....++.+.|-||+||||+|..++..+......+..+.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345677888899999999999999988776644455544
No 309
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.65 E-value=0.11 Score=49.69 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=27.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
++|+|.|-||+||||++..++..+......+..+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57888999999999999999988766543444443
No 310
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.64 E-value=0.15 Score=49.89 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
....+++|.|++|+|||||...+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34578999999999999999999876543
No 311
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.62 E-value=0.12 Score=50.80 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=30.2
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHhhh--cCCCceEEEE
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQIS--RDFQGKCFVA 249 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 249 (555)
...+++.+.|-||+||||+|..++..+. .....+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3467999999999999999999998887 5544555554
No 312
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.61 E-value=0.13 Score=50.32 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=30.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+++.+.|-||+||||+|..++..+......+..+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578889999999999999999998877655555554
No 313
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.58 E-value=0.57 Score=58.01 Aligned_cols=154 Identities=10% Similarity=-0.027 Sum_probs=0.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHh---
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRL--- 291 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l--- 291 (555)
+-+.++|++|+|||++|+.+....... ....+. .+.......++..+-..+....... ...
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~--~~~~in----fsa~ts~~~~~~~i~~~~~~~~~~~----------g~~~~P 1331 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLY--DVVGIN----FSKDTTTEHILSALHRHTNYVTTSK----------GLTLLP 1331 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSC--EEEEEE----CCTTCCHHHHHHHHHHHBCCEEETT----------TEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEE----eecCCCHHHHHHHHHHHhhhccccC----------CccccC
Q ss_pred --ccCceEEEEeCCCC----------cHHHHHHHhcCCCCCCCC---------ceEEEEeCchh-------hhhhcCCCe
Q 043805 292 --QRIKVLIVLDDVHD----------GFTQLENLVGGSDKFSPG---------SRIIITTRDKR-------VLDKCGVDN 343 (555)
Q Consensus 292 --~~~~~LlVlDdv~~----------~~~~~~~l~~~~~~~~~~---------~~iliTsR~~~-------~~~~~~~~~ 343 (555)
.++++++.+||++. ..+.+..++..-...... ..+|.++-.+. -........
T Consensus 1332 ~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1332 KSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp BSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred CCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Q ss_pred EEEeecCChHHHHHHHHHHhhccCCCChhHHHHHHHHHHHh
Q 043805 344 IFEVKGLQHSKALELFCRKAFRQNNRSHDLLELSQEVVCYA 384 (555)
Q Consensus 344 ~~~l~~L~~~ea~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~ 384 (555)
.+.++.++.++-.++|.......-...+.....+..|+..+
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 314
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.079 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998864
No 315
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.52 E-value=0.05 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++--.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999887543
No 316
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.45 E-value=0.058 Score=48.93 Aligned_cols=23 Identities=39% Similarity=0.264 Sum_probs=20.7
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.+++|.|+.|+|||||++.++-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998765
No 317
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.44 E-value=0.12 Score=46.78 Aligned_cols=29 Identities=31% Similarity=0.637 Sum_probs=24.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCC
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQ 243 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 243 (555)
+.|+|-|.-|+||||++..+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999998865443
No 318
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.43 E-value=0.073 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998765
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.36 E-value=0.08 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 320
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.35 E-value=0.074 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.-.++|.|++|+|||||+..+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357889999999999999999864
No 321
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.33 E-value=0.066 Score=49.72 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+++|.|+.|+|||||++.++--.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999988643
No 322
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.33 E-value=0.085 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEEecCcchhHHHHHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
..++|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999975
No 323
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.23 E-value=0.061 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||++.++--
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 324
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.19 E-value=0.12 Score=48.02 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=26.1
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
|+|+|-||+||||++..++..+......+..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556999999999999999998876654454544
No 325
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.13 E-value=0.059 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987654
No 326
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.11 E-value=0.071 Score=51.31 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=22.7
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
....++|+|+.|+|||||++.++..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999988765
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.04 E-value=0.2 Score=50.49 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=46.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhc
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQ 292 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~ 292 (555)
...+++|+|+.|+|||||+..++..+...-..+++....-+. ...... +. .......-.....++..++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~-~~~~~~--------q~--~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF-DIDGIG--------QT--QVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS-CCSSSE--------EE--ECBGGGTBCHHHHHHHHGG
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchh-ccCCcc--------eE--EEccccCcCHHHHHHHHhc
Confidence 356899999999999999999988765442233333211000 000000 00 0000001233456667788
Q ss_pred cCceEEEEeCCCC
Q 043805 293 RIKVLIVLDDVHD 305 (555)
Q Consensus 293 ~~~~LlVlDdv~~ 305 (555)
..+-++++.++.+
T Consensus 235 q~pd~i~vgEiRd 247 (418)
T 1p9r_A 235 QDPDVVMVGEIRD 247 (418)
T ss_dssp GCCSEEEESCCCS
T ss_pred cCCCeEEEcCcCC
Confidence 8888888998866
No 328
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.01 E-value=0.072 Score=49.62 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...+++|.|+.|+|||||++.++-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998754
No 329
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.98 E-value=0.14 Score=53.49 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=25.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
...+|.++|++|+||||+++.++..+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998765443
No 330
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.97 E-value=0.062 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=19.0
Q ss_pred EEEEEecCcchhHHHHHHHHH
Q 043805 216 IVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~ 236 (555)
-|+|.|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 331
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.93 E-value=0.078 Score=47.44 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.-.++|.|++|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 332
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=91.92 E-value=0.83 Score=39.18 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=48.1
Q ss_pred chHHHHHHHHHhcCCceeeeccccCCCCcchHHH----HHHHhhcceEEEEecc---CCccchhhHHHHHHHHHhH
Q 043805 32 GFTSHLAAALHRKQIQFFIDDEELKKGDEISPTI----LKAIETSDISIIIFSK---DYAASKWCLNELVKILDCK 100 (555)
Q Consensus 32 ~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i----~~~i~~s~~~i~v~S~---~~~~s~~~~~El~~~~~~~ 100 (555)
.+.+.+.+.|++.|+.||+-..+-. .+...| .++|++|+++|++++| .+. ..-+..|+..+....
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~---~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~-D~GTafEiGyA~Alg 98 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEA---TEALDIRQKNIQMIKDCDAVIADLSPFRGHEP-DCGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCC---SSHHHHHHHHHHHHHHCSEEEEECCCCSSSSC-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCCccCc---chHHHHHHHHHHHHHhCCEEEEEecCCCCCCC-CCcHHHHHHHHHHCC
Confidence 7889999999999999988532211 144444 7899999999999996 333 334778999888544
No 333
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.91 E-value=0.08 Score=58.50 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=82.0
Q ss_pred CCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhcccc
Q 043805 190 LDSFVGLNSRIEEMKSLMCLE-----------SHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKM 258 (555)
Q Consensus 190 ~~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 258 (555)
....+|.+...+.|.+.+... -...+.++++|++|+|||+||+.++......|-. +. .......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v~-~~~l~~~- 550 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---IK-GPELLTM- 550 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---CC-CSSSTTC-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-chHhhhh-
Confidence 356788888888887766411 1234568899999999999999999887543211 11 0000000
Q ss_pred ChHHHHHHHHHHHhCCccCCCCCchhHHHHHHhccCceEEEEeCCCC---------------cHHHHHHHhcCCCCCC--
Q 043805 259 GVIHVRDEVISRVLGENLKIGTPTIPQNIRKRLQRIKVLIVLDDVHD---------------GFTQLENLVGGSDKFS-- 321 (555)
Q Consensus 259 ~~~~~~~~ll~~~~~~~~~~~~~~l~~~l~~~l~~~~~LlVlDdv~~---------------~~~~~~~l~~~~~~~~-- 321 (555)
........+...+...-...+.+|+||+++. ....+..++..+....
T Consensus 551 ----------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 551 ----------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ----------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred ----------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 0000111111122222234567999999843 0112355555554221
Q ss_pred CCceEEEEeCchhhhh-hc----CCCeEEEeecCChHHHHHHHHHHh
Q 043805 322 PGSRIIITTRDKRVLD-KC----GVDNIFEVKGLQHSKALELFCRKA 363 (555)
Q Consensus 322 ~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Ll~~~~ 363 (555)
.+..||.||..+..+. .. .....+.++..+.++-.+++..++
T Consensus 615 ~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp -CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 3445555654332111 11 223467788888888888887765
No 334
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.89 E-value=0.064 Score=57.01 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=34.5
Q ss_pred CCcccchhhHHHHHhhhcccCC---------CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 191 DSFVGLNSRIEEMKSLMCLESH---------DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 191 ~~fvGR~~el~~l~~~L~~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+.++|.+...+.+...+..+.. +..-+.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4689999877777655542210 01158899999999999999988655
No 335
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.87 E-value=0.065 Score=50.52 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++-..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999887543
No 336
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.82 E-value=0.86 Score=45.99 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=28.1
Q ss_pred hhHHHHHhhhc---ccCCCeEEEEEEecCcchhHHHHHHHHH
Q 043805 198 SRIEEMKSLMC---LESHDVRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 198 ~el~~l~~~L~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
..++.|...+. ......++..|.|.+|.|||++..+.+.
T Consensus 142 ~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 142 AKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp HHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 44555555532 1234578999999999999999998774
No 337
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.77 E-value=0.23 Score=47.03 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=35.5
Q ss_pred hhHHHHHhhhcc--cCCCeEEEEEEec-CcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 198 SRIEEMKSLMCL--ESHDVRIVGIWGM-GGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 198 ~el~~l~~~L~~--~~~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.++.|...|.. .....++|+|+|. ||+||||++..++..+......+..+.
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 345555544431 2234678888875 899999999999998876555555554
No 338
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.76 E-value=0.13 Score=45.10 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998754
No 339
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.74 E-value=0.1 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=23.1
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
.+|+|.|+.|+||||+++.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998875
No 340
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.72 E-value=0.092 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEecCcchhHHHHHHHHHh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 341
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.72 E-value=0.16 Score=49.98 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=24.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...+|+|+|++|+|||||...+.......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 36789999999999999999998765443
No 342
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.72 E-value=0.16 Score=51.26 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=27.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCF 247 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 247 (555)
.+.+++|+|++|+||||++..++..+......+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 35788999999999999999999877655333333
No 343
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.68 E-value=0.24 Score=47.65 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCeEEEEEEec-CcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 212 HDVRIVGIWGM-GGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 212 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...++|+|+|. ||+||||++..++..+......+..+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 44678999886 899999999999988876544555554
No 344
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.68 E-value=0.19 Score=46.44 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=27.1
Q ss_pred eEEEEEE-ecCcchhHHHHHHHHHhhhcC-CCceEEEE
Q 043805 214 VRIVGIW-GMGGVGKTTIASVVFHQISRD-FQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 249 (555)
.++|+|+ +-||+||||++..++..+... ...+..+.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 4667666 569999999999999988776 44455554
No 345
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.68 E-value=0.084 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||++.++-.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998864
No 346
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.65 E-value=0.072 Score=50.23 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++-..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4689999999999999999887543
No 347
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.63 E-value=0.075 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||++.++--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 348
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.60 E-value=0.091 Score=49.15 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||++.++-.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998864
No 349
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.58 E-value=0.091 Score=49.09 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+++|.|+.|+|||||++.++-...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35899999999999999999876544
No 350
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.51 E-value=0.12 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999863
No 351
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.51 E-value=0.13 Score=44.18 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.-.|+|.|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999999864
No 352
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.50 E-value=0.076 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++-..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4589999999999999999987644
No 353
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.50 E-value=1.5 Score=45.83 Aligned_cols=64 Identities=13% Similarity=0.281 Sum_probs=39.4
Q ss_pred ceEEEEeCCCCcH--------HHHHHHhcCCCCCCCCceEEEEeCchh--hhh---hcCCCeEEEeecCChHHHHHHHH
Q 043805 295 KVLIVLDDVHDGF--------TQLENLVGGSDKFSPGSRIIITTRDKR--VLD---KCGVDNIFEVKGLQHSKALELFC 360 (555)
Q Consensus 295 ~~LlVlDdv~~~~--------~~~~~l~~~~~~~~~~~~iliTsR~~~--~~~---~~~~~~~~~l~~L~~~ea~~Ll~ 360 (555)
.++||+|++.+.. ..+..+...-. ..|.++|++|..+. ... .......+.+..-+..++..++-
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR--a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKAR--AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT--TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh--hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 3789999997611 11223332221 37899999987754 221 11345677888888888887763
No 354
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.47 E-value=0.089 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....++|.|+.|+|||||.+.++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999863
No 355
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.46 E-value=0.081 Score=49.15 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988754
No 356
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.46 E-value=0.077 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||++.++-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999988754
No 357
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.40 E-value=0.059 Score=50.85 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
....|+|.|..|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999998887653
No 358
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.33 E-value=0.086 Score=48.59 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=22.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+++|.|+.|+|||||++.++-...
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35899999999999999999876543
No 359
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.33 E-value=0.085 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++-..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999887543
No 360
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.33 E-value=0.072 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+++|.|+.|+|||||++.++-..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999987543
No 361
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.31 E-value=0.081 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++-..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999887543
No 362
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.30 E-value=0.086 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.554 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||++.++-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 363
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.29 E-value=0.1 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++--.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999887543
No 364
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.28 E-value=0.14 Score=44.35 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.--|+|.|.+|+|||||+..+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 34688999999999999999875
No 365
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.15 E-value=0.1 Score=47.56 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.+|+|+|++|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998765
No 366
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.14 E-value=0.18 Score=45.21 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=26.5
Q ss_pred EEEEEE-ecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIW-GMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
++|+|+ +-||+||||++..++..+......+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 466666 77999999999999998876544555554
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.13 E-value=0.086 Score=48.56 Aligned_cols=25 Identities=32% Similarity=0.088 Sum_probs=21.9
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....++|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988765
No 368
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.12 E-value=0.11 Score=44.38 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998863
No 369
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.11 E-value=0.099 Score=45.95 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.8
Q ss_pred EEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 217 VGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.|+|.+|+|||++|.+++.. . ...+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~---~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A---PQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C---SSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc-C---CCeEEEe
Confidence 689999999999999999865 2 2355554
No 370
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.08 E-value=0.12 Score=50.16 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.7
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36789999999999999999998653
No 371
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.06 E-value=0.089 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||++.++--
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999988754
No 372
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.03 E-value=0.94 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||...+...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999864
No 373
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.98 E-value=0.13 Score=44.75 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
....|+|.|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345788999999999999999976
No 374
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.94 E-value=0.34 Score=46.17 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=35.4
Q ss_pred hhHHHHHhhhc--ccCCCeEEEEEEe-cCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 198 SRIEEMKSLMC--LESHDVRIVGIWG-MGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 198 ~el~~l~~~L~--~~~~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+.++.|...|. ......++|+|+| -||+||||++..++..+......+..+.
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 44555555443 2233467777776 5899999999999998876655555554
No 375
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.94 E-value=0.12 Score=44.54 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.-.|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 376
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.91 E-value=0.13 Score=44.08 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.0
Q ss_pred EEEEecCcchhHHHHHHHHHh
Q 043805 217 VGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 217 v~I~G~~GiGKTtLa~~~~~~ 237 (555)
|+|.|.+|+|||+|...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 377
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.90 E-value=0.11 Score=44.51 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=18.5
Q ss_pred EEEEEecCcchhHHHHHHHHH
Q 043805 216 IVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~ 236 (555)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 378
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.90 E-value=0.11 Score=44.60 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=18.8
Q ss_pred EEEEEecCcchhHHHHHHHHH
Q 043805 216 IVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~ 236 (555)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999864
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.88 E-value=0.12 Score=44.35 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEEEecCcchhHHHHHHHHHh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 380
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.88 E-value=0.12 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
-.|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 381
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.87 E-value=0.1 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||.+.++-..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987644
No 382
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.86 E-value=0.12 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 383
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.85 E-value=0.12 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 384
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.85 E-value=0.14 Score=45.40 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999753
No 385
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.81 E-value=0.19 Score=43.70 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.7
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999999864
No 386
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.80 E-value=0.11 Score=44.59 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.7
Q ss_pred EEEEEEecCcchhHHHHHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
-.|+|.|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999986
No 387
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.78 E-value=0.13 Score=46.55 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|++|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999864
No 388
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.78 E-value=0.12 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEEecCcchhHHHHHHHHHh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 389
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.75 E-value=0.11 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999864
No 390
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.73 E-value=0.12 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988764
No 391
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.73 E-value=0.13 Score=44.26 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 392
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.71 E-value=0.1 Score=49.58 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++-..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999887543
No 393
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.69 E-value=0.23 Score=46.63 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.8
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999864
No 394
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.68 E-value=0.13 Score=44.67 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999853
No 395
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.67 E-value=0.19 Score=42.93 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.-|+|.|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999863
No 396
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.66 E-value=0.16 Score=46.22 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=24.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
...|++.|+.|+||||++..+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998765
No 397
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.65 E-value=0.21 Score=51.37 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=24.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCC
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDF 242 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 242 (555)
...|+++|++|+||||+++.++......+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 46889999999999999999998765443
No 398
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.65 E-value=0.23 Score=46.83 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.....|+|.|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999864
No 399
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.64 E-value=0.22 Score=52.76 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...+|+|+|++|+||||+|+.+++.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998774
No 400
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.63 E-value=0.12 Score=50.83 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999998864
No 401
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.63 E-value=0.17 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 402
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.57 E-value=0.13 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||+|+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998853
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.55 E-value=0.14 Score=44.93 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEEecCcchhHHHHHHHHHhh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
+.+|+|+.|+|||||+..+..-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999987654
No 404
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.54 E-value=0.17 Score=43.94 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999998764
No 405
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.53 E-value=0.24 Score=45.20 Aligned_cols=104 Identities=12% Similarity=0.043 Sum_probs=53.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEEechhhccccChHHHHHHHHHHHhCCccC--C-CCCchhHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVADVREESNKMGVIHVRDEVISRVLGENLK--I-GTPTIPQNIRKR 290 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~-~~~~l~~~l~~~ 290 (555)
..+..++|+-|.||||-+...+++.......+..+.... ....+ . .+....+..... . ...++. +.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~--D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~----~~ 87 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK--DTRYS-S----SFCTHDRNTMEALPACLLRDVA----QE 87 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT--CCCC----------------CEEEEESSGGGGH----HH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC--Cccch-H----HHHhhcCCeeEEEecCCHHHHH----HH
Confidence 468899999999999999888887665544444443221 11222 2 223332221111 1 112222 22
Q ss_pred hccCceEEEEeCCCCcHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043805 291 LQRIKVLIVLDDVHDGFTQLENLVGGSDKFSPGSRIIITTRD 332 (555)
Q Consensus 291 l~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~~~~iliTsR~ 332 (555)
. +.--+|++|++.- ...+..+...+.. .+..||+|.++
T Consensus 88 ~-~~~dvViIDEaQF-~~~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 88 A-LGVAVIGIDEGQF-FPDIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp H-TTCSEEEESSGGG-CTTHHHHHHHHHH--TTCEEEEECCS
T ss_pred h-ccCCEEEEEchhh-hhhHHHHHHHHHh--CCCEEEEEecc
Confidence 2 2334999999843 1113333333322 56789999987
No 406
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=90.52 E-value=0.29 Score=47.71 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=29.1
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+++.+.|-||+||||++..++..+......+..+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3567788999999999999999998876644455544
No 407
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.48 E-value=0.1 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...++|+|+.|+|||||++.++..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 468999999999999999988753
No 408
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.46 E-value=0.13 Score=45.74 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEEEEecCcchhHHHHHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
--|+|.|.+|+|||+|...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999874
No 409
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.46 E-value=0.14 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999863
No 410
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.46 E-value=0.17 Score=48.47 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=31.4
Q ss_pred hHHHHHhhhcccCCCeEEEEEEe---cCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 199 RIEEMKSLMCLESHDVRIVGIWG---MGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 199 el~~l~~~L~~~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
.+..+.+.+.. ..++++|++ -||+||||++..++..+......+..+.
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34455554432 234666665 8999999999999988765544444443
No 411
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.44 E-value=0.14 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.5
Q ss_pred EEEEEecCcchhHHHHHHHHHh
Q 043805 216 IVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998863
No 412
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.42 E-value=0.14 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999998864
No 413
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.40 E-value=0.14 Score=43.91 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999863
No 414
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=90.39 E-value=0.36 Score=47.56 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=29.0
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhh--cCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQIS--RDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 249 (555)
...++...|-||+||||++..++..+. .....+..+.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 346777889999999999999998887 6544555554
No 415
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.39 E-value=0.24 Score=51.82 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=27.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+++|.|++|+|||||+..++.........++++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 468999999999999999999976654433344543
No 416
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.30 E-value=0.2 Score=43.01 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999999853
No 417
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.30 E-value=0.3 Score=43.40 Aligned_cols=34 Identities=15% Similarity=-0.142 Sum_probs=26.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhhcCCCceEE
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCF 247 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 247 (555)
.++.+++|+.|.||||.+...+++...+...+..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v 41 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQV 41 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 4789999999999999999999887544333333
No 418
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.28 E-value=0.25 Score=49.22 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCeEEEEEE-ecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 212 HDVRIVGIW-GMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 212 ~~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
...++|+|+ |-||+||||+|..++..+......+..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 346778877 58999999999999988766544455554
No 419
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.24 E-value=0.19 Score=46.05 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
..+|+|.|+.|+||||+++.++..+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 420
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.24 E-value=0.37 Score=49.28 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=19.4
Q ss_pred eEEEEEEecCcchhHHHHH-HHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIAS-VVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~-~~~~~~ 238 (555)
.+.++|.|.+|+|||+||. .+++..
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 3568899999999999965 555544
No 421
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.20 E-value=0.15 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
-.|+|.|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999853
No 422
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.20 E-value=0.12 Score=49.41 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=21.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||++.++-..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999987644
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.19 E-value=0.15 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 424
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.18 E-value=0.16 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 425
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.11 E-value=0.16 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 426
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.09 E-value=0.2 Score=43.08 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999753
No 427
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.05 E-value=0.13 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
..+++|.|+.|+|||||.+.++-..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987654
No 428
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.04 E-value=0.15 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999863
No 429
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.01 E-value=0.14 Score=50.34 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 358999999999999999998854
No 430
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.96 E-value=0.16 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999864
No 431
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.94 E-value=0.41 Score=48.92 Aligned_cols=25 Identities=36% Similarity=0.250 Sum_probs=19.4
Q ss_pred eEEEEEEecCcchhHHHHH-HHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIAS-VVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~-~~~~~~ 238 (555)
.+.++|.|.+|+|||+||. .+++..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh
Confidence 3568899999999999965 555544
No 432
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.93 E-value=0.19 Score=48.40 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=25.9
Q ss_pred HHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 200 IEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 200 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
+++|.+.+. ..+++|.|++|+|||||.+.+. ...
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 455555553 2478999999999999999998 543
No 433
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.90 E-value=0.16 Score=44.52 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||||+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 434
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.90 E-value=0.15 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 458999999999999999998854
No 435
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.90 E-value=0.18 Score=43.73 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=20.7
Q ss_pred CeEEEEEEecCcchhHHHHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
..--|+|.|.+|+|||||+..+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999999875
No 436
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.86 E-value=0.14 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEEEecCcchhHHHHHHHHH
Q 043805 215 RIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
..|+|.|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999864
No 437
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.86 E-value=0.38 Score=51.70 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=27.1
Q ss_pred hhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcC
Q 043805 198 SRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRD 241 (555)
Q Consensus 198 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 241 (555)
...+.+...|.. ..+..|+||||.|||+.+.++...+-..
T Consensus 193 ~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 193 SQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp HHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 445556655541 2377899999999998877776654433
No 438
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.83 E-value=0.12 Score=46.01 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.5
Q ss_pred eEEEEEEecCcchhHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVF 235 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~ 235 (555)
.-.|+|.|.+|+|||||+..+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999999985
No 439
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.82 E-value=0.19 Score=49.82 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQIS 239 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 239 (555)
...++|.|+.|+|||||++.++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999987654
No 440
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.82 E-value=0.15 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 458999999999999999998864
No 441
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.80 E-value=0.17 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.0
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998753
No 442
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.79 E-value=0.15 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999998754
No 443
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.79 E-value=0.18 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35889999999999999999864
No 444
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.77 E-value=0.17 Score=46.16 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.9
Q ss_pred EEEEEecCcchhHHHHHHHHH
Q 043805 216 IVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 216 ~v~I~G~~GiGKTtLa~~~~~ 236 (555)
-|+|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 377899999999999999985
No 445
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.76 E-value=0.16 Score=44.84 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998863
No 446
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.72 E-value=0.17 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 447
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.71 E-value=0.16 Score=49.89 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999998754
No 448
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.70 E-value=0.17 Score=44.06 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=19.8
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998753
No 449
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.68 E-value=0.13 Score=50.59 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998754
No 450
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.68 E-value=0.31 Score=44.36 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=24.8
Q ss_pred EEEEEEec-CcchhHHHHHHHHHhhhcCCCceEE
Q 043805 215 RIVGIWGM-GGVGKTTIASVVFHQISRDFQGKCF 247 (555)
Q Consensus 215 ~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~ 247 (555)
+++.|+|. ||+||||++..++..+......+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 46777775 8999999999999887665434443
No 451
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.68 E-value=0.26 Score=43.00 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
....|+|.|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346788999999999999988863
No 452
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.66 E-value=0.17 Score=44.17 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999999863
No 453
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.64 E-value=0.18 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998864
No 454
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.62 E-value=0.17 Score=45.97 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=19.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.--|+|.|.+|+|||+|...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34588999999999999999873
No 455
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.62 E-value=0.18 Score=43.89 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446889999999999999998764
No 456
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.62 E-value=0.19 Score=43.79 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
...|+|.|.+|+|||||+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45788999999999999999985
No 457
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.61 E-value=0.18 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 458
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.56 E-value=0.18 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999864
No 459
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.55 E-value=0.16 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 458999999999999999998753
No 460
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.52 E-value=0.18 Score=44.80 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.-.|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999874
No 461
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.50 E-value=0.17 Score=49.94 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||++.++--
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 468999999999999999988753
No 462
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.50 E-value=0.3 Score=51.91 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=29.2
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..+++.++|.||+||||++..++..+......+..+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4578899999999999999999988766544455544
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.49 E-value=0.19 Score=44.53 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 464
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.47 E-value=1.3 Score=49.24 Aligned_cols=23 Identities=22% Similarity=-0.062 Sum_probs=20.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVF 235 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~ 235 (555)
...+++|+|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999884
No 465
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.43 E-value=0.21 Score=44.26 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.3
Q ss_pred CeEEEEEEecCcchhHHHHHHHHH
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
....|+|.|.+|+|||+|...+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999875
No 466
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.42 E-value=0.55 Score=47.41 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=22.2
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhc
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISR 240 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 240 (555)
+.++|.|.+|+|||+|+.++++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 45789999999999999999887654
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.41 E-value=0.19 Score=44.38 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
--|+|.|.+|+|||+|...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999863
No 468
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.41 E-value=0.12 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
...++|.|++|+|||||...+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999988764
No 469
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.38 E-value=0.18 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..-|+|.|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998753
No 470
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.33 E-value=0.24 Score=44.22 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.4
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457889999999999999999864
No 471
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.32 E-value=0.19 Score=44.80 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..-|+|.|.+|+|||||+..+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456889999999999999999864
No 472
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.28 E-value=0.19 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.4
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999864
No 473
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.22 E-value=0.19 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 474
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.20 E-value=0.19 Score=44.35 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=19.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHhh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
.--|+|.|.+|+|||+|++.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4468899999999999996555443
No 475
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.18 E-value=0.19 Score=44.35 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999998863
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.17 E-value=0.2 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||+|...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 477
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.16 E-value=0.19 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 358999999999999999998854
No 478
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=89.16 E-value=0.33 Score=48.17 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=28.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+++.+.|-||+||||++..++..+......+..+.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 57889999999999999999988776655555555
No 479
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.13 E-value=0.2 Score=44.14 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..-|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998753
No 480
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.09 E-value=0.19 Score=44.02 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
-.|+|.|.+|+|||+|...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999853
No 481
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.08 E-value=0.23 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999999864
No 482
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.08 E-value=0.22 Score=49.32 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=26.4
Q ss_pred EEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++|+|+.|+|||||++.++..+... .+.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 579999999999999999998765432 3455554
No 483
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.07 E-value=0.19 Score=44.91 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998863
No 484
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.98 E-value=0.68 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=18.6
Q ss_pred eEEEEEEecCcchhHHHHH-HHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIAS-VVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~-~~~~~ 237 (555)
.+.++|.|.+|+|||+|+. .++++
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh
Confidence 3467899999999999975 44443
No 485
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.96 E-value=0.23 Score=47.93 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCcchhHHHHHHHHHh
Q 043805 212 HDVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 212 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34778999999999999999999863
No 486
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=88.96 E-value=0.26 Score=47.54 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=21.7
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999753
No 487
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.93 E-value=0.22 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..-+.|.|++|+||||+|.++..+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356899999999999999998763
No 488
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.90 E-value=0.49 Score=50.59 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=31.3
Q ss_pred hhhHHHHHhhhcccCCCeEEEEEEecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 197 NSRIEEMKSLMCLESHDVRIVGIWGMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 197 ~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
+...+.+...+. .+...|+|++|.|||+++.++...+...-...+.+.
T Consensus 183 ~~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 183 HSQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 344445555442 246789999999999999888876654333344443
No 489
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.88 E-value=0.21 Score=44.12 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.-.|+|.|.+|+|||||+..+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 490
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.86 E-value=0.22 Score=44.60 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999863
No 491
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.85 E-value=0.2 Score=44.44 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=19.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.-.|+|.|.+|+|||+|+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999999864
No 492
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.84 E-value=0.33 Score=43.36 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=22.5
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHhh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQI 238 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 238 (555)
...+|+|+|++|+||+++|..+...+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999887654
No 493
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.84 E-value=0.3 Score=43.24 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.--|+|.|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 34688999999999999999986
No 494
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.82 E-value=0.21 Score=44.48 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
..-|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998753
No 495
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.82 E-value=0.2 Score=49.95 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...++|.|+.|+|||||.+.++--
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 468999999999999999998753
No 496
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.79 E-value=0.26 Score=45.49 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.6
Q ss_pred CeEEEEEEecCcchhHHHHHHHHHh
Q 043805 213 DVRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 213 ~~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998863
No 497
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.78 E-value=0.22 Score=43.96 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.5
Q ss_pred EEEEEEecCcchhHHHHHHHHHh
Q 043805 215 RIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 215 ~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
-.|+|.|.+|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 498
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.72 E-value=0.22 Score=44.50 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.2
Q ss_pred eEEEEEEecCcchhHHHHHHHHH
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFH 236 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~ 236 (555)
.--|+|.|.+|+|||||+..+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45688999999999999999875
No 499
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.61 E-value=0.31 Score=45.58 Aligned_cols=37 Identities=32% Similarity=0.313 Sum_probs=27.5
Q ss_pred CeEEEEEE-ecCcchhHHHHHHHHHhhhcCCCceEEEE
Q 043805 213 DVRIVGIW-GMGGVGKTTIASVVFHQISRDFQGKCFVA 249 (555)
Q Consensus 213 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 249 (555)
..++|+|+ +-||+||||++..++..+......+..+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34677776 78999999999999998876544444443
No 500
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.53 E-value=0.23 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchhHHHHHHHHHh
Q 043805 214 VRIVGIWGMGGVGKTTIASVVFHQ 237 (555)
Q Consensus 214 ~~~v~I~G~~GiGKTtLa~~~~~~ 237 (555)
...|+|.|.+|+|||||+..+...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999998763
Done!