Query 043807
Match_columns 242
No_of_seqs 300 out of 1559
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.6E-17 5.4E-22 123.6 6.2 80 34-116 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 9E-17 3.1E-21 114.9 2.9 70 44-117 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 6E-15 2.1E-19 98.9 4.0 52 64-115 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 1.1E-14 3.8E-19 102.1 5.4 55 64-119 12-66 (69)
5 2ep4_A Ring finger protein 24; 99.5 2.2E-14 7.5E-19 101.9 5.9 54 64-118 13-66 (74)
6 2ect_A Ring finger protein 126 99.5 3.2E-14 1.1E-18 102.0 5.9 55 64-119 13-67 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 2.4E-14 8.2E-19 104.2 3.9 53 64-116 13-76 (81)
8 3dpl_R Ring-box protein 1; ubi 99.4 9.3E-14 3.2E-18 106.4 3.8 67 48-115 19-100 (106)
9 2ecm_A Ring finger and CHY zin 99.4 1.4E-13 4.8E-18 92.0 3.7 50 65-115 4-54 (55)
10 1v87_A Deltex protein 2; ring- 99.4 4.2E-13 1.4E-17 102.9 5.6 52 65-117 24-95 (114)
11 2ea6_A Ring finger protein 4; 99.4 2.6E-13 8.8E-18 94.5 3.1 51 64-115 13-67 (69)
12 3ng2_A RNF4, snurf, ring finge 99.4 2.7E-13 9.2E-18 95.1 3.0 53 64-117 8-64 (71)
13 4a0k_B E3 ubiquitin-protein li 99.3 1.3E-13 4.4E-18 107.4 0.1 68 49-116 31-112 (117)
14 2xeu_A Ring finger protein 4; 99.3 4E-13 1.4E-17 92.1 2.3 52 65-117 2-57 (64)
15 2djb_A Polycomb group ring fin 99.3 1.8E-12 6.2E-17 91.6 5.1 52 64-118 13-64 (72)
16 1chc_A Equine herpes virus-1 r 99.3 1.4E-12 4.9E-17 90.8 4.5 49 65-116 4-52 (68)
17 2d8t_A Dactylidin, ring finger 99.3 1.5E-12 5.1E-17 91.9 3.6 49 64-116 13-61 (71)
18 2d8s_A Cellular modulator of i 99.3 3.4E-12 1.2E-16 92.9 4.9 53 64-118 13-72 (80)
19 2ecn_A Ring finger protein 141 99.3 1.4E-12 4.8E-17 91.5 2.1 49 64-117 13-61 (70)
20 2ysl_A Tripartite motif-contai 99.2 6.9E-12 2.4E-16 88.4 5.1 50 64-117 18-70 (73)
21 2ct2_A Tripartite motif protei 99.2 5E-12 1.7E-16 92.1 4.5 52 64-116 13-68 (88)
22 2csy_A Zinc finger protein 183 99.2 6.9E-12 2.3E-16 90.5 4.6 48 64-115 13-60 (81)
23 4ayc_A E3 ubiquitin-protein li 99.2 3.7E-12 1.3E-16 101.3 2.8 47 65-115 52-98 (138)
24 2yur_A Retinoblastoma-binding 99.2 1.3E-11 4.3E-16 87.9 5.3 49 64-115 13-63 (74)
25 2ecy_A TNF receptor-associated 99.2 1.1E-11 3.7E-16 86.1 4.4 50 64-117 13-63 (66)
26 2ct0_A Non-SMC element 1 homol 99.2 2.1E-11 7.1E-16 87.5 5.6 52 64-118 13-66 (74)
27 2ecv_A Tripartite motif-contai 99.2 2.3E-11 7.9E-16 87.6 5.5 50 64-117 17-72 (85)
28 2ecw_A Tripartite motif-contai 99.2 2E-11 6.7E-16 88.0 5.1 50 64-117 17-72 (85)
29 2egp_A Tripartite motif-contai 99.2 8.1E-12 2.8E-16 89.3 2.7 49 64-116 10-65 (79)
30 1t1h_A Gspef-atpub14, armadill 99.2 1.8E-11 6.1E-16 87.5 4.5 49 64-116 6-55 (78)
31 3lrq_A E3 ubiquitin-protein li 99.1 1.6E-11 5.4E-16 92.4 3.0 47 65-115 21-69 (100)
32 2ysj_A Tripartite motif-contai 99.1 3.6E-11 1.2E-15 82.5 4.5 43 64-110 18-63 (63)
33 1g25_A CDK-activating kinase a 99.1 2.7E-11 9.3E-16 83.8 3.7 52 65-117 2-56 (65)
34 4ap4_A E3 ubiquitin ligase RNF 99.1 1.8E-11 6E-16 95.2 2.7 53 64-117 5-61 (133)
35 2ckl_A Polycomb group ring fin 99.1 2.9E-11 1E-15 91.9 3.3 50 64-116 13-62 (108)
36 2y43_A E3 ubiquitin-protein li 99.1 3.1E-11 1E-15 90.3 3.2 48 65-115 21-68 (99)
37 3ztg_A E3 ubiquitin-protein li 99.1 7.3E-11 2.5E-15 86.9 4.4 49 64-115 11-61 (92)
38 2ckl_B Ubiquitin ligase protei 99.1 1.1E-10 3.9E-15 95.1 5.5 76 37-115 21-101 (165)
39 3fl2_A E3 ubiquitin-protein li 99.1 7.9E-11 2.7E-15 91.6 4.1 48 65-116 51-99 (124)
40 2ecj_A Tripartite motif-contai 99.1 9.8E-11 3.4E-15 78.7 3.7 43 64-110 13-58 (58)
41 1jm7_A BRCA1, breast cancer ty 99.0 2E-10 6.7E-15 87.3 4.6 48 65-116 20-70 (112)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 1.2E-10 4E-15 90.5 2.4 52 64-116 70-125 (133)
43 3l11_A E3 ubiquitin-protein li 99.0 5.6E-11 1.9E-15 91.3 -0.2 47 65-115 14-61 (115)
44 1z6u_A NP95-like ring finger p 99.0 3.3E-10 1.1E-14 91.5 4.2 49 65-117 77-126 (150)
45 2kr4_A Ubiquitin conjugation f 98.9 5.2E-10 1.8E-14 81.9 4.2 48 64-115 12-59 (85)
46 3hct_A TNF receptor-associated 98.9 3.1E-10 1.1E-14 87.7 2.8 48 64-115 16-64 (118)
47 2vje_A E3 ubiquitin-protein li 98.9 4E-10 1.4E-14 78.2 2.9 47 65-115 7-56 (64)
48 2kre_A Ubiquitin conjugation f 98.9 6.2E-10 2.1E-14 84.1 3.9 49 64-116 27-75 (100)
49 1e4u_A Transcriptional repress 98.9 6.9E-10 2.3E-14 80.2 3.8 53 64-117 9-63 (78)
50 1rmd_A RAG1; V(D)J recombinati 98.9 5.7E-10 1.9E-14 85.7 3.5 48 65-116 22-70 (116)
51 1bor_A Transcription factor PM 98.9 3E-10 1E-14 76.6 1.7 47 64-117 4-50 (56)
52 1wgm_A Ubiquitin conjugation f 98.9 1.2E-09 4.2E-14 82.1 4.6 48 64-115 20-68 (98)
53 3knv_A TNF receptor-associated 98.9 7E-10 2.4E-14 88.7 2.5 50 64-117 29-79 (141)
54 2vje_B MDM4 protein; proto-onc 98.8 1.2E-09 4.1E-14 75.5 2.7 49 65-115 6-55 (63)
55 1jm7_B BARD1, BRCA1-associated 98.8 1E-09 3.5E-14 84.6 2.3 45 65-115 21-66 (117)
56 2y1n_A E3 ubiquitin-protein li 98.8 1.8E-09 6.2E-14 99.4 4.1 47 66-116 332-379 (389)
57 4ic3_A E3 ubiquitin-protein li 98.8 1.8E-09 6.2E-14 76.8 1.5 44 65-116 23-67 (74)
58 2c2l_A CHIP, carboxy terminus 98.7 7.8E-09 2.7E-13 89.7 3.7 48 64-115 206-254 (281)
59 2yu4_A E3 SUMO-protein ligase 98.7 7.9E-09 2.7E-13 76.8 3.1 47 64-113 5-59 (94)
60 3k1l_B Fancl; UBC, ring, RWD, 98.7 3.6E-09 1.2E-13 95.7 1.3 52 64-115 306-372 (381)
61 3hcs_A TNF receptor-associated 98.6 1.2E-08 4E-13 83.4 2.9 49 64-116 16-65 (170)
62 1wim_A KIAA0161 protein; ring 98.6 2.1E-08 7.3E-13 74.2 3.0 48 65-113 4-61 (94)
63 2ea5_A Cell growth regulator w 98.6 4E-08 1.4E-12 68.9 4.0 46 64-117 13-59 (68)
64 2ecg_A Baculoviral IAP repeat- 98.6 2.5E-08 8.5E-13 70.9 3.0 44 65-116 24-68 (75)
65 2f42_A STIP1 homology and U-bo 98.5 5E-08 1.7E-12 81.1 3.6 48 64-115 104-152 (179)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.5 7.6E-08 2.6E-12 66.0 3.5 48 64-115 4-58 (60)
67 2yho_A E3 ubiquitin-protein li 98.5 3.8E-08 1.3E-12 71.0 1.5 44 65-116 17-61 (79)
68 3htk_C E3 SUMO-protein ligase 98.3 1.3E-07 4.4E-12 82.7 2.1 48 65-115 180-231 (267)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.3E-07 4.6E-12 86.0 1.2 44 64-115 293-337 (345)
70 2bay_A PRE-mRNA splicing facto 98.3 3.5E-07 1.2E-11 62.8 2.3 47 67-116 4-50 (61)
71 3vk6_A E3 ubiquitin-protein li 98.0 3.7E-06 1.3E-10 63.0 3.6 47 68-117 3-50 (101)
72 3nw0_A Non-structural maintena 97.9 7E-06 2.4E-10 70.9 4.7 52 65-119 179-232 (238)
73 2ko5_A Ring finger protein Z; 95.8 0.0088 3E-07 44.1 3.9 52 64-120 26-77 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.022 7.6E-07 41.7 2.6 35 65-100 2-36 (101)
75 2lri_C Autoimmune regulator; Z 93.8 0.043 1.5E-06 37.7 3.1 47 64-114 10-60 (66)
76 1we9_A PHD finger family prote 88.1 0.096 3.3E-06 35.3 0.1 50 64-113 4-58 (64)
77 2l5u_A Chromodomain-helicase-D 84.6 0.4 1.4E-05 32.1 1.7 45 64-112 9-57 (61)
78 3u5n_A E3 ubiquitin-protein li 83.6 0.27 9.2E-06 40.8 0.6 47 64-114 5-55 (207)
79 3o36_A Transcription intermedi 83.1 0.25 8.6E-06 40.2 0.2 46 65-114 3-52 (184)
80 3lqh_A Histone-lysine N-methyl 82.5 0.46 1.6E-05 39.0 1.5 48 67-114 3-64 (183)
81 2k16_A Transcription initiatio 82.4 0.36 1.2E-05 33.4 0.8 50 65-115 17-70 (75)
82 1f62_A Transcription factor WS 81.9 0.64 2.2E-05 29.6 1.8 44 68-112 2-49 (51)
83 1wil_A KIAA1045 protein; ring 80.9 1.1 3.9E-05 32.2 2.9 35 64-100 13-47 (89)
84 1weo_A Cellulose synthase, cat 80.6 2.5 8.7E-05 30.6 4.7 52 65-116 15-70 (93)
85 1mm2_A MI2-beta; PHD, zinc fin 80.5 0.39 1.3E-05 32.1 0.4 47 64-114 7-57 (61)
86 2ysm_A Myeloid/lymphoid or mix 79.7 0.53 1.8E-05 35.0 0.9 47 64-111 5-55 (111)
87 2lv9_A Histone-lysine N-methyl 78.5 0.7 2.4E-05 33.9 1.2 44 66-111 28-74 (98)
88 1fp0_A KAP-1 corepressor; PHD 77.3 1.6 5.3E-05 31.6 2.8 46 64-113 23-72 (88)
89 2vpb_A Hpygo1, pygopus homolog 77.2 1.4 4.9E-05 29.8 2.4 35 64-98 6-41 (65)
90 2kgg_A Histone demethylase jar 76.9 2.1 7E-05 27.5 3.0 44 68-111 4-52 (52)
91 1wep_A PHF8; structural genomi 75.8 1.8 6.1E-05 30.2 2.7 49 65-114 11-64 (79)
92 3v43_A Histone acetyltransfera 75.4 0.78 2.7E-05 34.3 0.8 45 68-112 63-111 (112)
93 2yql_A PHD finger protein 21A; 73.9 0.33 1.1E-05 31.8 -1.5 44 64-111 7-54 (56)
94 3m62_A Ubiquitin conjugation f 73.8 2.1 7.3E-05 43.4 3.6 47 65-115 890-937 (968)
95 1wem_A Death associated transc 72.4 1.1 3.6E-05 31.1 0.8 48 65-114 15-71 (76)
96 1xwh_A Autoimmune regulator; P 72.3 0.54 1.8E-05 31.9 -0.8 46 64-113 6-55 (66)
97 2yt5_A Metal-response element- 72.2 1.8 6.1E-05 28.9 1.9 51 64-114 4-62 (66)
98 2yw8_A RUN and FYVE domain-con 71.9 1.9 6.5E-05 30.4 2.1 35 65-99 18-52 (82)
99 2ks1_B Epidermal growth factor 70.4 1.9 6.4E-05 27.2 1.5 10 9-18 29-38 (44)
100 2ri7_A Nucleosome-remodeling f 70.1 0.89 3E-05 36.4 -0.1 49 64-113 6-59 (174)
101 2lbm_A Transcriptional regulat 69.5 5.5 0.00019 31.2 4.4 45 64-112 61-116 (142)
102 2l2t_A Receptor tyrosine-prote 69.1 2 6.7E-05 27.1 1.4 11 8-18 27-37 (44)
103 2puy_A PHD finger protein 21A; 68.8 0.67 2.3E-05 30.7 -0.9 46 64-113 3-52 (60)
104 3v43_A Histone acetyltransfera 68.6 6.3 0.00021 29.2 4.4 47 65-111 4-62 (112)
105 3i2d_A E3 SUMO-protein ligase 67.9 7.7 0.00026 35.2 5.6 46 67-115 250-299 (371)
106 2l43_A N-teminal domain from h 67.7 4.3 0.00015 29.0 3.2 51 64-114 23-76 (88)
107 2xb1_A Pygopus homolog 2, B-ce 66.7 2.7 9.3E-05 31.1 2.0 49 66-114 3-62 (105)
108 2cs3_A Protein C14ORF4, MY039 65.5 11 0.00036 26.9 4.7 39 64-103 13-52 (93)
109 1wew_A DNA-binding family prot 65.3 2.2 7.4E-05 29.8 1.2 49 65-114 15-73 (78)
110 2ku3_A Bromodomain-containing 64.2 5.8 0.0002 27.2 3.2 49 64-112 14-65 (71)
111 2e6r_A Jumonji/ARID domain-con 63.8 0.77 2.6E-05 33.3 -1.5 49 64-113 14-66 (92)
112 3asl_A E3 ubiquitin-protein li 62.5 1.7 5.7E-05 29.9 0.1 44 68-112 20-68 (70)
113 2ro1_A Transcription intermedi 62.1 1.7 5.8E-05 35.5 0.1 45 66-114 2-50 (189)
114 1vfy_A Phosphatidylinositol-3- 61.5 4.7 0.00016 27.6 2.3 34 66-99 11-44 (73)
115 1zbd_B Rabphilin-3A; G protein 61.5 3.7 0.00013 31.8 2.0 35 64-98 53-88 (134)
116 1joc_A EEA1, early endosomal a 61.4 4 0.00014 31.1 2.2 34 66-99 69-102 (125)
117 1z60_A TFIIH basal transcripti 61.3 4.1 0.00014 27.1 1.9 43 67-110 16-58 (59)
118 1y02_A CARP2, FYVE-ring finger 61.0 0.79 2.7E-05 35.1 -1.9 49 65-113 18-66 (120)
119 1z2q_A LM5-1; membrane protein 60.0 4.8 0.00017 28.3 2.2 36 65-100 20-55 (84)
120 3t7l_A Zinc finger FYVE domain 59.7 4.4 0.00015 29.0 2.0 36 65-100 19-54 (90)
121 1x4u_A Zinc finger, FYVE domai 59.2 5.9 0.0002 27.9 2.6 34 65-98 13-46 (84)
122 1dvp_A HRS, hepatocyte growth 56.6 4.2 0.00014 33.7 1.6 35 65-99 160-194 (220)
123 3o70_A PHD finger protein 13; 55.6 2 6.9E-05 29.3 -0.4 46 65-112 18-66 (68)
124 3ql9_A Transcriptional regulat 55.6 11 0.00039 28.9 3.8 45 64-112 55-110 (129)
125 1wfk_A Zinc finger, FYVE domai 55.3 6.1 0.00021 28.2 2.1 36 65-100 8-43 (88)
126 2jwa_A Receptor tyrosine-prote 55.2 7.4 0.00025 24.4 2.2 17 3-19 23-39 (44)
127 3zyq_A Hepatocyte growth facto 54.9 4.9 0.00017 33.6 1.8 36 65-100 163-198 (226)
128 2e6s_A E3 ubiquitin-protein li 54.6 3.1 0.0001 29.1 0.4 44 68-112 28-76 (77)
129 2kwj_A Zinc finger protein DPF 53.5 7.5 0.00026 28.9 2.5 34 67-100 2-41 (114)
130 3shb_A E3 ubiquitin-protein li 52.7 2.3 7.8E-05 29.8 -0.6 43 69-112 29-76 (77)
131 2o35_A Hypothetical protein DU 52.4 5.4 0.00018 29.5 1.4 11 92-102 43-53 (105)
132 3fyb_A Protein of unknown func 52.2 5.5 0.00019 29.4 1.4 11 92-102 42-52 (104)
133 4gne_A Histone-lysine N-methyl 52.1 7.7 0.00026 28.9 2.3 47 64-116 13-65 (107)
134 3mpx_A FYVE, rhogef and PH dom 51.4 3.1 0.00011 37.6 0.0 50 65-114 374-430 (434)
135 2gmg_A Hypothetical protein PF 49.3 4.7 0.00016 30.0 0.7 27 87-118 72-98 (105)
136 1wev_A Riken cDNA 1110020M19; 48.1 7 0.00024 27.8 1.4 50 65-114 15-73 (88)
137 2cu8_A Cysteine-rich protein 2 47.7 13 0.00044 24.9 2.7 41 65-116 8-48 (76)
138 1wen_A Inhibitor of growth fam 45.7 11 0.00037 25.8 2.0 45 65-114 15-66 (71)
139 3ask_A E3 ubiquitin-protein li 44.5 5 0.00017 34.0 0.2 44 68-112 176-224 (226)
140 1x4k_A Skeletal muscle LIM-pro 43.0 18 0.00063 23.6 2.9 40 67-116 6-45 (72)
141 1iml_A CRIP, cysteine rich int 43.0 11 0.00037 25.3 1.7 11 67-77 28-38 (76)
142 1weu_A Inhibitor of growth fam 42.6 9.3 0.00032 27.6 1.4 45 65-114 35-86 (91)
143 4fo9_A E3 SUMO-protein ligase 42.4 17 0.00059 32.7 3.4 46 67-115 216-265 (360)
144 1wyh_A SLIM 2, skeletal muscle 42.4 18 0.0006 23.7 2.7 41 66-116 5-45 (72)
145 1x63_A Skeletal muscle LIM-pro 38.6 27 0.00093 23.5 3.3 40 67-116 16-55 (82)
146 1g47_A Pinch protein; LIM doma 38.1 24 0.00081 23.4 2.9 42 65-116 10-51 (77)
147 2co8_A NEDD9 interacting prote 38.1 26 0.00087 23.9 3.1 42 65-117 14-55 (82)
148 1x61_A Thyroid receptor intera 37.1 26 0.00089 22.9 2.9 40 66-115 5-44 (72)
149 2dj7_A Actin-binding LIM prote 36.8 16 0.00056 24.9 1.9 40 65-115 14-53 (80)
150 1x4l_A Skeletal muscle LIM-pro 35.4 24 0.00083 23.1 2.5 40 66-115 5-46 (72)
151 3a1b_A DNA (cytosine-5)-methyl 34.5 25 0.00085 28.0 2.8 43 65-111 78-132 (159)
152 2zet_C Melanophilin; complex, 33.1 16 0.00054 28.9 1.4 32 65-97 67-100 (153)
153 1wee_A PHD finger family prote 33.0 15 0.00052 24.8 1.2 47 66-113 16-66 (72)
154 2d8y_A Eplin protein; LIM doma 32.6 33 0.0011 23.7 3.0 40 66-116 15-54 (91)
155 1x68_A FHL5 protein; four-and- 32.0 32 0.0011 22.8 2.7 39 67-115 6-46 (76)
156 3o7a_A PHD finger protein 13 v 31.9 6.8 0.00023 24.9 -0.8 41 71-112 8-51 (52)
157 2jne_A Hypothetical protein YF 31.5 11 0.00036 27.8 0.1 40 67-115 33-72 (101)
158 3f6q_B LIM and senescent cell 30.9 31 0.0011 22.2 2.5 42 65-116 10-51 (72)
159 2cor_A Pinch protein; LIM doma 30.7 34 0.0012 23.1 2.7 40 65-116 14-53 (79)
160 1nyp_A Pinch protein; LIM doma 30.0 29 0.001 22.2 2.2 38 66-115 5-42 (66)
161 1zfo_A LAsp-1; LIM domain, zin 30.0 19 0.00065 20.3 1.1 27 67-96 4-30 (31)
162 2l3k_A Rhombotin-2, linker, LI 30.0 23 0.00079 26.1 1.9 37 68-114 10-46 (123)
163 2jrp_A Putative cytoplasmic pr 29.4 20 0.00069 25.3 1.3 12 67-78 3-14 (81)
164 3kv5_D JMJC domain-containing 29.3 10 0.00035 35.6 -0.4 47 66-113 37-88 (488)
165 2jmo_A Parkin; IBR, E3 ligase, 28.3 5.3 0.00018 27.9 -1.9 16 87-102 55-70 (80)
166 2csz_A Synaptotagmin-like prot 28.3 26 0.00088 24.5 1.7 33 64-96 23-56 (76)
167 1iij_A ERBB-2 receptor protein 27.9 9.3 0.00032 22.8 -0.6 15 4-18 20-34 (35)
168 1a7i_A QCRP2 (LIM1); LIM domai 27.5 15 0.00051 24.9 0.4 40 66-116 7-46 (81)
169 2d8v_A Zinc finger FYVE domain 27.1 25 0.00084 23.9 1.4 30 65-99 7-37 (67)
170 2pv0_B DNA (cytosine-5)-methyl 26.9 33 0.0011 31.1 2.6 44 65-112 92-147 (386)
171 2ct7_A Ring finger protein 31; 26.7 6.9 0.00024 27.6 -1.6 18 83-100 44-61 (86)
172 2vnf_A ING 4, P29ING4, inhibit 26.5 14 0.00047 24.3 -0.0 42 66-112 10-58 (60)
173 3c6w_A P28ING5, inhibitor of g 26.0 15 0.00052 24.0 0.2 43 65-112 8-57 (59)
174 2l4z_A DNA endonuclease RBBP8, 25.9 26 0.0009 26.1 1.5 38 67-115 62-99 (123)
175 1x62_A C-terminal LIM domain p 25.8 34 0.0012 22.9 2.0 39 65-115 14-52 (79)
176 1wig_A KIAA1808 protein; LIM d 25.0 47 0.0016 22.0 2.6 37 67-115 6-42 (73)
177 2d8x_A Protein pinch; LIM doma 24.4 47 0.0016 21.5 2.4 39 66-116 5-43 (70)
178 2d8z_A Four and A half LIM dom 23.8 49 0.0017 21.4 2.4 38 66-115 5-42 (70)
179 2dar_A PDZ and LIM domain prot 23.6 41 0.0014 23.1 2.1 40 65-116 24-63 (90)
180 1wd2_A Ariadne-1 protein homol 23.5 6.3 0.00021 26.1 -2.2 36 67-102 7-46 (60)
181 1m3v_A FLIN4, fusion of the LI 23.4 65 0.0022 23.5 3.3 50 65-116 31-81 (122)
182 2jvx_A NF-kappa-B essential mo 22.4 16 0.00054 20.6 -0.3 12 104-115 3-14 (28)
183 1v6g_A Actin binding LIM prote 22.4 43 0.0015 22.5 1.9 38 67-116 16-53 (81)
184 2egq_A FHL1 protein; LIM domai 22.3 58 0.002 21.4 2.6 40 67-116 16-58 (77)
185 1x64_A Alpha-actinin-2 associa 21.7 60 0.0021 22.2 2.7 40 65-116 24-63 (89)
186 2ehe_A Four and A half LIM dom 21.3 50 0.0017 22.1 2.1 39 67-115 16-54 (82)
187 2cup_A Skeletal muscle LIM-pro 20.5 91 0.0031 21.5 3.5 10 105-114 67-76 (101)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=123.59 Aligned_cols=80 Identities=25% Similarity=0.520 Sum_probs=69.2
Q ss_pred hhhhcCCCCHHHHhcCCceeeecccccccccCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcC
Q 043807 34 LHQFAKGIEEKVLLTIPILAYSAKDCKLFRVDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSP 113 (242)
Q Consensus 34 ~~~~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 113 (242)
......|++++.++.||.+.+..... ....+..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCcCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 34567899999999999998876552 2346678999999999988888898 99999999999999999999999998
Q ss_pred CCC
Q 043807 114 VAD 116 (242)
Q Consensus 114 i~~ 116 (242)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9e-17 Score=114.89 Aligned_cols=70 Identities=29% Similarity=0.849 Sum_probs=59.5
Q ss_pred HHHhcCCceeeecccccccccCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCC
Q 043807 44 KVLLTIPILAYSAKDCKLFRVDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQ 117 (242)
Q Consensus 44 ~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 117 (242)
+.++.||.+.+.... ...++..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 4 ~~i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 356788998887654 2346678999999999988888998 999999999999999999999999988643
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.52 E-value=6e-15 Score=98.86 Aligned_cols=52 Identities=52% Similarity=1.155 Sum_probs=46.6
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
+++..|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999988878888679999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=102.07 Aligned_cols=55 Identities=44% Similarity=0.983 Sum_probs=48.4
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQPK 119 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~ 119 (242)
..+..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+....+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 45678999999998877788888 99999999999999999999999999876543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=101.91 Aligned_cols=54 Identities=31% Similarity=0.856 Sum_probs=48.2
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQP 118 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 118 (242)
..+..|+||++.|..+..+.+++ |+|.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 45678999999999888888888 9999999999999999899999999986543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=3.2e-14 Score=102.04 Aligned_cols=55 Identities=44% Similarity=0.879 Sum_probs=48.7
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQPK 119 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~ 119 (242)
..+..|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 45678999999999888888888 99999999999999999999999999876543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=104.17 Aligned_cols=53 Identities=28% Similarity=0.710 Sum_probs=43.4
Q ss_pred cCCceeeeecccccC-----------CceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELED-----------GEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
.++..|+||++.|.+ ++.+++++.|+|.||..||.+|+..+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 355679999998854 34455665699999999999999999999999998753
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.41 E-value=9.3e-14 Score=106.41 Aligned_cols=67 Identities=27% Similarity=0.564 Sum_probs=51.1
Q ss_pred cCCceeeecccccccccCCceeeeecccccCC--------------c-eeeecCCCCccccHhHHHHHHhcCCCCCCCCc
Q 043807 48 TIPILAYSAKDCKLFRVDQSECVICLGELEDG--------------E-MVRLLPSCRHAFHVQCIGNWLLGHTICPVCRS 112 (242)
Q Consensus 48 ~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~--------------~-~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 112 (242)
.+...++..........++..|+||++.|... + .++.++ |+|.||..||..||..+.+||+||.
T Consensus 19 r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 97 (106)
T 3dpl_R 19 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNR 97 (106)
T ss_dssp SEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCS
T ss_pred ceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCC
Confidence 34444455554444556778999999999754 1 245565 9999999999999999999999999
Q ss_pred CCC
Q 043807 113 PVA 115 (242)
Q Consensus 113 ~i~ 115 (242)
.+.
T Consensus 98 ~~~ 100 (106)
T 3dpl_R 98 EWE 100 (106)
T ss_dssp BCC
T ss_pred cce
Confidence 874
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=1.4e-13 Score=91.96 Aligned_cols=50 Identities=32% Similarity=0.796 Sum_probs=43.0
Q ss_pred CCceeeeecccccCCc-eeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGE-MVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
.+..|+||++.|..++ .+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578999999996543 466676 9999999999999998899999999874
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.37 E-value=4.2e-13 Score=102.92 Aligned_cols=52 Identities=31% Similarity=0.767 Sum_probs=42.0
Q ss_pred CCceeeeecccccCCc---------------eeeecCCCCccccHhHHHHHH-----hcCCCCCCCCcCCCCC
Q 043807 65 DQSECVICLGELEDGE---------------MVRLLPSCRHAFHVQCIGNWL-----LGHTICPVCRSPVADQ 117 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~CR~~i~~~ 117 (242)
.+..|+||++.|..+. .+.+++ |+|.||..||..|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999996643 233566 99999999999999 4577999999988654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.6e-13 Score=94.49 Aligned_cols=51 Identities=25% Similarity=0.651 Sum_probs=43.5
Q ss_pred cCCceeeeecccccCC----ceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDG----EMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
.+...|+||++.|.++ ..+.+++ |||.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4567899999998753 3346676 9999999999999999999999999885
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=2.7e-13 Score=95.13 Aligned_cols=53 Identities=25% Similarity=0.639 Sum_probs=44.7
Q ss_pred cCCceeeeecccccCC----ceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDG----EMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 117 (242)
.++..|+||++.+.++ +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4567899999998653 4446676 999999999999999999999999998643
No 13
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.3e-13 Score=107.41 Aligned_cols=68 Identities=25% Similarity=0.522 Sum_probs=9.2
Q ss_pred CCceeeecccccccccCCceeeeecccccCC--------------ceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCC
Q 043807 49 IPILAYSAKDCKLFRVDQSECVICLGELEDG--------------EMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPV 114 (242)
Q Consensus 49 lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~--------------~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i 114 (242)
+...++........+..+..|+||++.|... +..++++.|+|.||..||..||..+.+||+||.++
T Consensus 31 ~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 31 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EEEEEEEEEEEEEECCCC--------------------------------------------------------------
T ss_pred eEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 3344455554444556778999999999752 22333334999999999999999999999999987
Q ss_pred CC
Q 043807 115 AD 116 (242)
Q Consensus 115 ~~ 116 (242)
..
T Consensus 111 ~~ 112 (117)
T 4a0k_B 111 EF 112 (117)
T ss_dssp --
T ss_pred ee
Confidence 43
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=4e-13 Score=92.14 Aligned_cols=52 Identities=25% Similarity=0.648 Sum_probs=43.6
Q ss_pred CCceeeeecccccCC----ceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCC
Q 043807 65 DQSECVICLGELEDG----EMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQ 117 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 117 (242)
++..|+||++.+.++ +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999998753 3446676 999999999999999999999999988643
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=91.65 Aligned_cols=52 Identities=29% Similarity=0.544 Sum_probs=43.2
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQP 118 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 118 (242)
.+...|+||++.+.++ +.+++ |||.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3567899999999863 33346 9999999999999998999999999986543
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=1.4e-12 Score=90.84 Aligned_cols=49 Identities=37% Similarity=0.870 Sum_probs=42.6
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
.+..|+||++.+.++ +..++ |||.||..||..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456899999998753 46777 99999999999999999999999998853
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=91.86 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=42.5
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
.++..|+||++.+.+ .+.++ |+|.||..||..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 456789999999976 45667 99999999999999999999999998853
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=92.92 Aligned_cols=53 Identities=26% Similarity=0.669 Sum_probs=44.0
Q ss_pred cCCceeeeecccccCCceeeecCCCC-----ccccHhHHHHHHhcC--CCCCCCCcCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCR-----HAFHVQCIGNWLLGH--TICPVCRSPVADQP 118 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~~~ 118 (242)
.++..|.||+++|..++.+ ++| |. |.||..||++|+..+ .+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4567899999999876655 577 96 999999999999864 58999999986554
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=91.49 Aligned_cols=49 Identities=39% Similarity=0.968 Sum_probs=42.9
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 117 (242)
.+...|+||++.+.. ..++ |+|.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 356789999999876 5676 999999999999999999999999998644
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.9e-12 Score=88.40 Aligned_cols=50 Identities=30% Similarity=0.690 Sum_probs=41.9
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHh---cCCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL---GHTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~CR~~i~~~ 117 (242)
.++..|+||++.+.+ ...++ |||.||..||..|+. .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 456789999999985 45666 999999999999996 466899999988543
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=92.11 Aligned_cols=52 Identities=27% Similarity=0.638 Sum_probs=44.1
Q ss_pred cCCceeeeecccccCCce-eeecCCCCccccHhHHHHHHhcC---CCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDGEM-VRLLPSCRHAFHVQCIGNWLLGH---TICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~Fh~~Ci~~wl~~~---~~CP~CR~~i~~ 116 (242)
.+...|+||++.|...+. +++++ |||.||..||..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456789999999987654 66776 99999999999999875 799999998754
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.9e-12 Score=90.54 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=41.9
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
.....|+||++.|.+ .++++ |||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 355789999999976 44676 9999999999999999999999999884
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=3.7e-12 Score=101.27 Aligned_cols=47 Identities=30% Similarity=0.846 Sum_probs=41.5
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
++..|+||++.|.+ +++++ |||.||..||..|+..+.+||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34689999999976 45677 9999999999999999999999999884
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=87.87 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=40.7
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC--CCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH--TICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~ 115 (242)
.++..|+||++.|.++ +.++.|||.||..||..|+..+ ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3567899999999874 3455599999999999999865 68999999764
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=86.06 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=41.5
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHH-hcCCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWL-LGHTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl-~~~~~CP~CR~~i~~~ 117 (242)
.+...|+||++.+.++ ..++ |||.||..||..|+ ..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4567899999999864 3356 99999999999999 4667999999988543
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.1e-11 Score=87.45 Aligned_cols=52 Identities=21% Similarity=0.541 Sum_probs=43.1
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC--CCCCCCCcCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH--TICPVCRSPVADQP 118 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~~~ 118 (242)
+....|+||++.|..++... .|+|.||..||.+||+.+ .+||+||..+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 44578999999998764332 599999999999999877 89999999986543
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.3e-11 Score=87.61 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=42.5
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc------CCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG------HTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~CR~~i~~~ 117 (242)
.+...|+||++.+.++ ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4567899999999764 4566 9999999999999986 78999999998653
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=2e-11 Score=87.99 Aligned_cols=50 Identities=32% Similarity=0.607 Sum_probs=42.5
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc------CCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG------HTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~CR~~i~~~ 117 (242)
.++..|+||++.|.++ .+++ |||.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567899999999874 3676 9999999999999987 77899999988643
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.17 E-value=8.1e-12 Score=89.26 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=41.8
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc-------CCCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-------HTICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-------~~~CP~CR~~i~~ 116 (242)
.++..|+||++.|.++ +.++ |||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567899999999864 4566 9999999999999986 6789999999864
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.17 E-value=1.8e-11 Score=87.54 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=42.1
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc-CCCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-HTICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~ 116 (242)
.++..|+||++.|.+ .+.++ |||.||..||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 456799999999986 34566 9999999999999986 7899999998853
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.13 E-value=1.6e-11 Score=92.44 Aligned_cols=47 Identities=36% Similarity=0.899 Sum_probs=40.8
Q ss_pred CCceeeeecccccCCceeee-cCCCCccccHhHHHHHHhcC-CCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRL-LPSCRHAFHVQCIGNWLLGH-TICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~-lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~ 115 (242)
++..|+||++.|.+ .+. ++ |||.||..||..|+... ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45789999999986 345 66 99999999999999977 69999999884
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.6e-11 Score=82.53 Aligned_cols=43 Identities=33% Similarity=0.737 Sum_probs=36.7
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHh---cCCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL---GHTICPVC 110 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~C 110 (242)
.++..|+||++.|.++ ++++ |||.||..||..|+. .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999999863 4566 999999999999998 46689998
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.7e-11 Score=83.77 Aligned_cols=52 Identities=19% Similarity=0.535 Sum_probs=41.1
Q ss_pred CCceeeeecc-cccCCcee-eecCCCCccccHhHHHHHHhc-CCCCCCCCcCCCCC
Q 043807 65 DQSECVICLG-ELEDGEMV-RLLPSCRHAFHVQCIGNWLLG-HTICPVCRSPVADQ 117 (242)
Q Consensus 65 ~~~~C~ICl~-~~~~~~~~-~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~ 117 (242)
++..|+||++ .+.++... ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 4568999999 77766443 3455 9999999999999764 56899999988543
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=1.8e-11 Score=95.23 Aligned_cols=53 Identities=25% Similarity=0.639 Sum_probs=44.9
Q ss_pred cCCceeeeecccccCC----ceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDG----EMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 117 (242)
.++..|+||++.|.++ +.++.++ |||.||..||.+|+..+.+||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4567899999999753 3446776 999999999999999999999999998644
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.11 E-value=2.9e-11 Score=91.93 Aligned_cols=50 Identities=30% Similarity=0.693 Sum_probs=42.3
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
.++..|+||++.|.++ +.+++ |||.||..||..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3567899999999763 33346 99999999999999999999999998854
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.10 E-value=3.1e-11 Score=90.33 Aligned_cols=48 Identities=31% Similarity=0.710 Sum_probs=40.9
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
+...|+||++.|.+ .+.++.|||.||..||..|+..+..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 45689999999986 3444239999999999999999999999999885
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.08 E-value=7.3e-11 Score=86.91 Aligned_cols=49 Identities=29% Similarity=0.702 Sum_probs=40.6
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc--CCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG--HTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~CR~~i~ 115 (242)
.++..|+||++.|.++ +.++.|||.||..||..|+.. +..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4668999999999864 455559999999999999974 369999999873
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.07 E-value=1.1e-10 Score=95.06 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=52.9
Q ss_pred hcCCCCHHHHhcCCceeeeccccc----ccccCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc-CCCCCCCC
Q 043807 37 FAKGIEEKVLLTIPILAYSAKDCK----LFRVDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-HTICPVCR 111 (242)
Q Consensus 37 ~~~gl~~~~i~~lp~~~~~~~~~~----~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR 111 (242)
...+++...+...|...+...... ........|+||++.|.++ +.+++ |||.||..||..|+.. +..||+||
T Consensus 21 ~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr 97 (165)
T 2ckl_B 21 KTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCR 97 (165)
T ss_dssp CCCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred ccccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCC
Confidence 345667777766655433332211 1112345899999999863 43446 9999999999999986 78899999
Q ss_pred cCCC
Q 043807 112 SPVA 115 (242)
Q Consensus 112 ~~i~ 115 (242)
..+.
T Consensus 98 ~~~~ 101 (165)
T 2ckl_B 98 KKLV 101 (165)
T ss_dssp CBCC
T ss_pred CcCC
Confidence 9885
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.06 E-value=7.9e-11 Score=91.65 Aligned_cols=48 Identities=19% Similarity=0.492 Sum_probs=40.7
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC-CCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH-TICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~ 116 (242)
++..|+||++.|.+ .+.++ |||.||..||..|+..+ ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45689999999986 45666 99999999999999854 499999999854
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=9.8e-11 Score=78.66 Aligned_cols=43 Identities=33% Similarity=0.834 Sum_probs=36.0
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHH---hcCCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWL---LGHTICPVC 110 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl---~~~~~CP~C 110 (242)
.+...|+||++.+.++ +.++ |||.||..||..|+ ..+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999874 4566 99999999999995 456789998
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=2e-10 Score=87.32 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=40.0
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC---CCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH---TICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~---~~CP~CR~~i~~ 116 (242)
+...|+||++.+.++ ..++ |||.||..||..|+..+ ..||+||..+..
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 346899999999764 3466 99999999999999865 489999998864
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.2e-10 Score=90.54 Aligned_cols=52 Identities=25% Similarity=0.641 Sum_probs=43.5
Q ss_pred cCCceeeeecccccCC----ceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDG----EMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
.+...|+||++.|... ...+.++ |||.||..||..|+..+.+||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4567899999998752 2345666 99999999999999999999999998854
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.97 E-value=5.6e-11 Score=91.26 Aligned_cols=47 Identities=30% Similarity=0.699 Sum_probs=40.4
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc-CCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-HTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~ 115 (242)
++..|+||++.|.. .+.++ |||.||..||..|+.. +..||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45789999999986 34566 9999999999999976 678999999885
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.96 E-value=3.3e-10 Score=91.50 Aligned_cols=49 Identities=20% Similarity=0.477 Sum_probs=41.2
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCC-CCCCCCcCCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHT-ICPVCRSPVADQ 117 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~~ 117 (242)
+...|+||++.|.+ .+.++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999986 44576 999999999999998654 899999998644
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.94 E-value=5.2e-10 Score=81.91 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=42.7
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
.++..|+||++.|.+ .++++ |||.|+..||..|+..+.+||+|+.++.
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 356889999999987 56777 9999999999999998899999998874
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=3.1e-10 Score=87.68 Aligned_cols=48 Identities=31% Similarity=0.560 Sum_probs=40.8
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCC-CCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHT-ICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~ 115 (242)
.++..|+||++.+.++ +.++ |||.||..||..|+.... .||+||..+.
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 4567899999999863 4566 999999999999998654 9999999884
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.92 E-value=4e-10 Score=78.16 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=40.0
Q ss_pred CCceeeeecccccCCceeeec--CCCCcc-ccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLL--PSCRHA-FHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
++..|.||++.+.+ ..++ | |||. ||..|+..|+..+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45689999999875 3343 7 9999 899999999998899999999884
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.91 E-value=6.2e-10 Score=84.07 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=43.2
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
.++..|+||++.|.+ +++++ |||.|+..||..|+..+.+||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 456889999999997 45677 99999999999999988999999998853
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.91 E-value=6.9e-10 Score=80.18 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=40.9
Q ss_pred cCCceeeeecccccCCcee-eecCCCCccccHhHHHHHHh-cCCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMV-RLLPSCRHAFHVQCIGNWLL-GHTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~-~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~ 117 (242)
.++..|+||++.+...+.. .-++ |||.||..|+..|+. .+..||+||..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4667899999998643322 2233 999999999999874 467899999998654
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=5.7e-10 Score=85.69 Aligned_cols=48 Identities=33% Similarity=0.591 Sum_probs=40.9
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc-CCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-HTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~ 116 (242)
++..|+||++.+.+ .+.++ |||.||..||..|+.. +..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 35689999999976 34566 9999999999999986 7799999998853
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=3e-10 Score=76.59 Aligned_cols=47 Identities=28% Similarity=0.635 Sum_probs=39.1
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 117 (242)
.+...|+||++.|.++ ++++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4567899999999864 5677 9999999999884 56899999988654
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.89 E-value=1.2e-09 Score=82.11 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=42.6
Q ss_pred cCCceeeeecccccCCceeeecCCCC-ccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCR-HAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
.++..|+||++.|.+ .++++ || |.|++.||..|+..+.+||+|+.++.
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 356889999999997 45677 99 99999999999998899999999885
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=7e-10 Score=88.74 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=41.6
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC-CCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH-TICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~~ 117 (242)
.++..|+||++.|.++ +.++ |||.||..||..|+... ..||+||.++...
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 4667999999999874 4566 99999999999999865 4899999987543
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.83 E-value=1.2e-09 Score=75.52 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=39.6
Q ss_pred CCceeeeecccccCCceeeecCCCCcc-ccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHA-FHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
....|.||++...+. .+..+| |||. ||..|+..|...+..||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456899999987652 122237 9998 999999999988889999999884
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1e-09 Score=84.59 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=38.9
Q ss_pred CCceeeeecccccCCceeeec-CCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLL-PSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
+...|+||++.|.++ +.+ + |||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 467899999999874 455 6 999999999999997 78999999874
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.82 E-value=1.8e-09 Score=99.43 Aligned_cols=47 Identities=30% Similarity=0.747 Sum_probs=41.1
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHh-cCCCCCCCCcCCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL-GHTICPVCRSPVAD 116 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~ 116 (242)
...|+||++.+.+ ++.+| |||.||..|+..|+. .+..||+||.++..
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4689999999865 56677 999999999999998 78899999998854
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=1.8e-09 Score=76.78 Aligned_cols=44 Identities=25% Similarity=0.635 Sum_probs=37.6
Q ss_pred CCceeeeecccccCCceeeecCCCCcc-ccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHA-FHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
++..|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999999876 56677 9999 999999999 789999998853
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=7.8e-09 Score=89.68 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=41.0
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc-CCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-HTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~ 115 (242)
.....|+||++.|.+ +++++ |||.||..||..|+.. ..+||+||.++.
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 356789999999987 45677 9999999999999985 445999999884
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=7.9e-09 Score=76.84 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=38.6
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC------CCCCC--CCcC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH------TICPV--CRSP 113 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~------~~CP~--CR~~ 113 (242)
..+..|+||++.|.+ +++++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456789999999987 44553499999999999999753 58999 8765
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.67 E-value=3.6e-09 Score=95.67 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=39.7
Q ss_pred cCCceeeeecccccCCcee----eecCCCCccccHhHHHHHHhcC-----------CCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMV----RLLPSCRHAFHVQCIGNWLLGH-----------TICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~----~~lp~C~H~Fh~~Ci~~wl~~~-----------~~CP~CR~~i~ 115 (242)
....+|+||++.+.++..+ -..+.|+|.||..||.+||+.. .+||+||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4567899999999873222 1223599999999999999742 46999999874
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.63 E-value=1.2e-08 Score=83.38 Aligned_cols=49 Identities=31% Similarity=0.572 Sum_probs=41.1
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC-CCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH-TICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~ 116 (242)
.+...|+||++.|.++ +.++ |||.||..||..|+... ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4567999999999874 4566 99999999999999754 499999998854
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=2.1e-08 Score=74.17 Aligned_cols=48 Identities=27% Similarity=0.654 Sum_probs=39.6
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc--------CCCCCC--CCcC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG--------HTICPV--CRSP 113 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~--------~~~CP~--CR~~ 113 (242)
+...|+||++.+..++.+.+.+ |||.||..|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998776666666 9999999999999863 247999 9876
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=4e-08 Score=68.88 Aligned_cols=46 Identities=33% Similarity=0.796 Sum_probs=38.2
Q ss_pred cCCceeeeecccccCCceeeecCCCCcc-ccHhHHHHHHhcCCCCCCCCcCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHA-FHVQCIGNWLLGHTICPVCRSPVADQ 117 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 117 (242)
.+...|.||++...+ +.++| |||. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 456789999998765 66788 9999 99999984 47899999988643
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.5e-08 Score=70.87 Aligned_cols=44 Identities=25% Similarity=0.640 Sum_probs=36.3
Q ss_pred CCceeeeecccccCCceeeecCCCCcc-ccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHA-FHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
++..|+||++.+.+ +..+| |||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34689999999876 55677 9999 99999965 3789999998854
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.51 E-value=5e-08 Score=81.05 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=40.8
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC-CCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH-TICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~ 115 (242)
.....|+||++.|.+ +++++ |||.|+..||..|+..+ .+||+|+.++.
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 456789999999997 45667 99999999999999864 47999998874
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.49 E-value=7.6e-08 Score=65.96 Aligned_cols=48 Identities=29% Similarity=0.615 Sum_probs=37.1
Q ss_pred cCCceeeeecccccCCceeeecCCCC--c---cccHhHHHHHHhc--CCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCR--H---AFHVQCIGNWLLG--HTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~Fh~~Ci~~wl~~--~~~CP~CR~~i~ 115 (242)
.+...|.||+++.. +.. ++| |. | .||..||.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999843 223 566 65 4 8999999999963 689999998874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.46 E-value=3.8e-08 Score=70.98 Aligned_cols=44 Identities=32% Similarity=0.738 Sum_probs=36.9
Q ss_pred CCceeeeecccccCCceeeecCCCCcc-ccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHA-FHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
++..|.||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 34589999998875 66777 9999 999999987 389999998854
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.3e-07 Score=82.73 Aligned_cols=48 Identities=29% Similarity=0.485 Sum_probs=39.4
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC--CCCCC--CCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH--TICPV--CRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~--CR~~i~ 115 (242)
....|+||++.|.++ |+... |||.||+.||..|+..+ ..||+ |+..+.
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 456799999999875 43345 99999999999999754 57999 999764
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.29 E-value=1.3e-07 Score=85.95 Aligned_cols=44 Identities=25% Similarity=0.764 Sum_probs=38.0
Q ss_pred cCCceeeeecccccCCceeeecCCCCcc-ccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHA-FHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
.++..|+||++.+.. +..+| |||. ||..|+..| ..||+||..+.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 356789999999876 56677 9999 999999998 68999999885
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.25 E-value=3.5e-07 Score=62.77 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=40.2
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
..|+||++.+.++ ++++.|||.|.+.||.+|+..+.+||+++.++..
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999999874 4552499999999999999988889999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.00 E-value=3.7e-06 Score=63.00 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=38.5
Q ss_pred eeeeecccccCCceeeecCCCCccccHhHHHHHHh-cCCCCCCCCcCCCCC
Q 043807 68 ECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL-GHTICPVCRSPVADQ 117 (242)
Q Consensus 68 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~ 117 (242)
.|.+|--.+. ...+.+| |+|+||.+|+..|.+ ...+||.|+.++...
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4777777765 3577888 999999999999985 568999999998544
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.93 E-value=7e-06 Score=70.92 Aligned_cols=52 Identities=21% Similarity=0.515 Sum_probs=42.0
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcC--CCCCCCCcCCCCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGH--TICPVCRSPVADQPK 119 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~~~~ 119 (242)
....|.||.+.+..+ . ..+.|+|.||..|+..|++.+ ..||.|+..|+...+
T Consensus 179 ~i~~C~iC~~iv~~g--~-~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--Q-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC--E-ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC--c-ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 356899999999876 3 333599999999999999764 489999999876543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.75 E-value=0.0088 Score=44.09 Aligned_cols=52 Identities=21% Similarity=0.497 Sum_probs=41.5
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQPKS 120 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 120 (242)
-+...|-.|+-.... ++....|.+|..|+...|.....||+|..+++.....
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 355789999988764 3333459999999999999999999999999766443
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.30 E-value=0.022 Score=41.68 Aligned_cols=35 Identities=11% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNW 100 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 100 (242)
++..|.||++.+..+-...-+. |+|.||..|+..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3568999998753322233365 9999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.80 E-value=0.043 Score=37.72 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=33.8
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSPV 114 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~i 114 (242)
.....|.||.+. ++ +..-..|...||..|+...|.. .-.||.|....
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999753 33 4444569999999999887754 33799997654
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.12 E-value=0.096 Score=35.29 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=34.0
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHh-----cCCCCCCCCcC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL-----GHTICPVCRSP 113 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~ 113 (242)
.+...|+||...+.++...+....|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 355679999998864443333335999999999854221 35679999753
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.57 E-value=0.4 Score=32.11 Aligned_cols=45 Identities=31% Similarity=0.719 Sum_probs=31.6
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHh----cCCCCCCCCc
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL----GHTICPVCRS 112 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~----~~~~CP~CR~ 112 (242)
..+..|.||... ++ +.....|...||..|+..-+. ..-.||.|..
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999873 23 444456989999999987543 2346999965
No 78
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.63 E-value=0.27 Score=40.82 Aligned_cols=47 Identities=26% Similarity=0.528 Sum_probs=33.8
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSPV 114 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~i 114 (242)
..+..|.+|... ..+.....|...||..|+.+.+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456679999854 235555569999999999776543 34699998654
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.11 E-value=0.25 Score=40.18 Aligned_cols=46 Identities=28% Similarity=0.636 Sum_probs=33.0
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSPV 114 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~i 114 (242)
++..|.||... ++ +.....|...||..|+..-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 33 4455569999999999775543 34699998754
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=82.49 E-value=0.46 Score=39.04 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=34.1
Q ss_pred ceeeeecccccCCce---eeecCCCCccccHhHHHH------HHh-----cCCCCCCCCcCC
Q 043807 67 SECVICLGELEDGEM---VRLLPSCRHAFHVQCIGN------WLL-----GHTICPVCRSPV 114 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~---~~~lp~C~H~Fh~~Ci~~------wl~-----~~~~CP~CR~~i 114 (242)
..|+||...+.+++. .+....|...||..|+.- -+. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 369999999987652 334445999999999842 111 267999998753
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.42 E-value=0.36 Score=33.43 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=33.7
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHh----cCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL----GHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~----~~~~CP~CR~~i~ 115 (242)
+...|.||..... ++..+....|...||..|+..-.. ..-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999988764 333444445999999999975443 2456999976553
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.92 E-value=0.64 Score=29.64 Aligned_cols=44 Identities=32% Similarity=0.707 Sum_probs=28.8
Q ss_pred eeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCc
Q 043807 68 ECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRS 112 (242)
Q Consensus 68 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~ 112 (242)
.|.||...-..+ .+..-..|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888764333 34444469999999999753332 235888864
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.93 E-value=1.1 Score=32.19 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=23.3
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHH
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNW 100 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 100 (242)
..+..|.||-.-- .++....- -|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccceeccc-cccccccHhhcccc
Confidence 4677899997432 22222222 39999999999985
No 84
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.63 E-value=2.5 Score=30.64 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=37.4
Q ss_pred CCceeeeeccccc---CCceeeecCCCCccccHhHHHHH-HhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELE---DGEMVRLLPSCRHAFHVQCIGNW-LLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~Fh~~Ci~~w-l~~~~~CP~CR~~i~~ 116 (242)
....|.||-+++. +++..+..-.|+--.|+.|++-= -..+..||.|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4468999999863 33434333458888999999643 3468899999998853
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.47 E-value=0.39 Score=32.14 Aligned_cols=47 Identities=26% Similarity=0.675 Sum_probs=31.4
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSPV 114 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~i 114 (242)
..+..|.||.+. ++ +..-..|...||..|+..-+.. .-.||.|....
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456679999863 22 3344458899999999854432 33599997643
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.68 E-value=0.53 Score=35.04 Aligned_cols=47 Identities=17% Similarity=0.466 Sum_probs=31.2
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCR 111 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR 111 (242)
.++..|.||.+.-...+.+ .-..|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4677899998864322223 33459999999999876542 23566664
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=78.47 E-value=0.7 Score=33.89 Aligned_cols=44 Identities=27% Similarity=0.573 Sum_probs=29.7
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHh---cCCCCCCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL---GHTICPVCR 111 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~CR 111 (242)
...| ||......+..+ ....|.-.||..|+..-+. ....||.|+
T Consensus 28 ~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp BCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 3568 898776655444 3445999999999864322 235799996
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.33 E-value=1.6 Score=31.63 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=32.3
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSP 113 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~ 113 (242)
..+..|.||... ++ +.....|.-.||..|+.+=+.. .-.||.|...
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999975 23 4444468889999999765532 2369999754
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=77.16 E-value=1.4 Score=29.82 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=25.3
Q ss_pred cCCceeeeecccccCCceeeecC-CCCccccHhHHH
Q 043807 64 VDQSECVICLGELEDGEMVRLLP-SCRHAFHVQCIG 98 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~ 98 (242)
.....|.+|...+.++...+... .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35568999999987665555554 589999999984
No 90
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=76.88 E-value=2.1 Score=27.48 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=29.0
Q ss_pred eeeeecccccCCceeeecC-CCCccccHhHHHHH----HhcCCCCCCCC
Q 043807 68 ECVICLGELEDGEMVRLLP-SCRHAFHVQCIGNW----LLGHTICPVCR 111 (242)
Q Consensus 68 ~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~w----l~~~~~CP~CR 111 (242)
.|.||...+.++...+.-. .|..-||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888886544333433 48889999998521 13567899885
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.76 E-value=1.8 Score=30.23 Aligned_cols=49 Identities=20% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHH-----hcCCCCCCCCcCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWL-----LGHTICPVCRSPV 114 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~CR~~i 114 (242)
....| ||...+..+...+....|...||..|+.--. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34557 8988875333233333599999999995221 1356899998754
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.39 E-value=0.78 Score=34.33 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=29.7
Q ss_pred eeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCc
Q 043807 68 ECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRS 112 (242)
Q Consensus 68 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~ 112 (242)
.|.||...-.+++.+..-..|...||..|+..-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577777653333345555569999999999764432 236888864
No 93
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.89 E-value=0.33 Score=31.81 Aligned_cols=44 Identities=25% Similarity=0.696 Sum_probs=29.1
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCR 111 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR 111 (242)
..+..|.||... ++ +..-..|...||..|+..-+.. .-.||.|.
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 456789999974 23 3444469999999999754432 22477764
No 94
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=73.76 E-value=2.1 Score=43.42 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=40.4
Q ss_pred CCceeeeecccccCCceeeecCCCC-ccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCR-HAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
++..|+|-++.+.+ ++++| -| +.|-+.+|.+|+..+.+||+=|.++.
T Consensus 890 ~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred HHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 45679999999987 56777 76 68999999999999999999988885
No 95
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.43 E-value=1.1 Score=31.11 Aligned_cols=48 Identities=27% Similarity=0.474 Sum_probs=32.1
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHH---------HhcCCCCCCCCcCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNW---------LLGHTICPVCRSPV 114 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w---------l~~~~~CP~CR~~i 114 (242)
....| ||......+..+..- .|...||..|+.-- ......||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 34567 898887644444433 49999999999421 12467899997643
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.32 E-value=0.54 Score=31.89 Aligned_cols=46 Identities=28% Similarity=0.641 Sum_probs=31.6
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSP 113 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~ 113 (242)
..+..|.||... ++ +.....|...||..|+..-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456789999964 23 4444469999999999854432 3359988653
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.21 E-value=1.8 Score=28.94 Aligned_cols=51 Identities=18% Similarity=0.428 Sum_probs=34.4
Q ss_pred cCCceeeeecccccC-CceeeecCCCCccccHhHHHHHH-------hcCCCCCCCCcCC
Q 043807 64 VDQSECVICLGELED-GEMVRLLPSCRHAFHVQCIGNWL-------LGHTICPVCRSPV 114 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl-------~~~~~CP~CR~~i 114 (242)
.++..|.||...... +..+.....|...||..|+..-+ ...-.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999987532 34455556799999999987533 1234688886543
No 98
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.95 E-value=1.9 Score=30.37 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=25.0
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGN 99 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 99 (242)
+...|.+|...|..-..--....||++||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44579999999975432223336999999999754
No 99
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=70.37 E-value=1.9 Score=27.17 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 043807 9 LIVKYLMMRR 18 (242)
Q Consensus 9 li~~~~~~rr 18 (242)
+++++|++||
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3333444433
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=70.11 E-value=0.89 Score=36.36 Aligned_cols=49 Identities=22% Similarity=0.586 Sum_probs=32.6
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHH-----hcCCCCCCCCcC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWL-----LGHTICPVCRSP 113 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~CR~~ 113 (242)
.+...| ||......+........|...||..|+.--. .....||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345679 9998875444344444599999999995211 235689999863
No 101
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.45 E-value=5.5 Score=31.23 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=31.9
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHh-----------cCCCCCCCCc
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL-----------GHTICPVCRS 112 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----------~~~~CP~CR~ 112 (242)
..+..|.||.+.= + +.....|...||..||..-+. ..-.||+|+.
T Consensus 61 g~~d~C~vC~~GG---~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGG---N-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCS---S-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCC---c-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567899998752 2 444446999999999996542 2346999953
No 102
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=69.14 E-value=2 Score=27.09 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 043807 8 HLIVKYLMMRR 18 (242)
Q Consensus 8 ~li~~~~~~rr 18 (242)
.+++++|++||
T Consensus 27 ~~~~~~~~RRR 37 (44)
T 2l2t_A 27 GLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhhh
Confidence 33334444443
No 103
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=68.81 E-value=0.67 Score=30.70 Aligned_cols=46 Identities=24% Similarity=0.714 Sum_probs=30.5
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSP 113 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~ 113 (242)
..+..|.||... ++ +..-..|...||..|+..-+.. .-.||.|...
T Consensus 3 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 356789999874 33 3444469999999999854432 2358877543
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.63 E-value=6.3 Score=29.23 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=29.4
Q ss_pred CCceeeeecccc-----cCCceeeecCCCCccccHhHHHHH------H-hcCCCCCCCC
Q 043807 65 DQSECVICLGEL-----EDGEMVRLLPSCRHAFHVQCIGNW------L-LGHTICPVCR 111 (242)
Q Consensus 65 ~~~~C~ICl~~~-----~~~~~~~~lp~C~H~Fh~~Ci~~w------l-~~~~~CP~CR 111 (242)
....|.+|+..- ..++.+..-..|+..||..|+..+ + ...-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 446799998763 122344445569999999999531 1 2334577664
No 105
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.91 E-value=7.7 Score=35.17 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=29.7
Q ss_pred ceeeeecccccCCceeeecCCCCcc--ccHhHHHHHHh--cCCCCCCCCcCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHA--FHVQCIGNWLL--GHTICPVCRSPVA 115 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~--Fh~~Ci~~wl~--~~~~CP~CR~~i~ 115 (242)
..|+|-...+..+ ++-.. |.|. |-..-+..... ..-.||+|...+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 5688877777654 66665 9998 44433333322 2457999987663
No 106
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=67.73 E-value=4.3 Score=29.03 Aligned_cols=51 Identities=22% Similarity=0.566 Sum_probs=34.2
Q ss_pred cCCceeeeecccc-cCCceeeecCCCCccccHhHHHHHHh--cCCCCCCCCcCC
Q 043807 64 VDQSECVICLGEL-EDGEMVRLLPSCRHAFHVQCIGNWLL--GHTICPVCRSPV 114 (242)
Q Consensus 64 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~Fh~~Ci~~wl~--~~~~CP~CR~~i 114 (242)
.++..|.||...- .+++.+.....|.-.||..|+..-+. ..-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4567899999764 23345555566989999999975321 233588886543
No 107
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=66.71 E-value=2.7 Score=31.10 Aligned_cols=49 Identities=29% Similarity=0.517 Sum_probs=34.1
Q ss_pred CceeeeecccccCCceeeecC-CCCccccHhHHHHH------H----hcCCCCCCCCcCC
Q 043807 66 QSECVICLGELEDGEMVRLLP-SCRHAFHVQCIGNW------L----LGHTICPVCRSPV 114 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~w------l----~~~~~CP~CR~~i 114 (242)
...|.||...+.++...+..- .|...||..|+.-- + .....||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 457999999986654444443 58899999998421 1 1356799998754
No 108
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.50 E-value=11 Score=26.93 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=28.6
Q ss_pred cCCceeeeecccccCCceeeecC-CCCccccHhHHHHHHhc
Q 043807 64 VDQSECVICLGELEDGEMVRLLP-SCRHAFHVQCIGNWLLG 103 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~wl~~ 103 (242)
.....|.+|.+.+++..-+ ..| .=+|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 3456899999999875433 333 24599999999998864
No 109
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.31 E-value=2.2 Score=29.77 Aligned_cols=49 Identities=27% Similarity=0.482 Sum_probs=31.4
Q ss_pred CCceeeeecccccCCceeeec-CCCCccccHhHHHHHH---------hcCCCCCCCCcCC
Q 043807 65 DQSECVICLGELEDGEMVRLL-PSCRHAFHVQCIGNWL---------LGHTICPVCRSPV 114 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl---------~~~~~CP~CR~~i 114 (242)
....| ||......+..+..- +.|...||..|+.--- .....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34568 898875554444333 0499999999995311 1356799997644
No 110
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=64.24 E-value=5.8 Score=27.19 Aligned_cols=49 Identities=22% Similarity=0.600 Sum_probs=32.2
Q ss_pred cCCceeeeecccc-cCCceeeecCCCCccccHhHHHHHHh--cCCCCCCCCc
Q 043807 64 VDQSECVICLGEL-EDGEMVRLLPSCRHAFHVQCIGNWLL--GHTICPVCRS 112 (242)
Q Consensus 64 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~Fh~~Ci~~wl~--~~~~CP~CR~ 112 (242)
.++..|.||...- .+++.+.....|.-.||..|+..-.. ..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567899998764 33344555557999999999974221 1235777753
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.77 E-value=0.77 Score=33.34 Aligned_cols=49 Identities=24% Similarity=0.503 Sum_probs=32.7
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcC
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSP 113 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~ 113 (242)
.++..|.||...-.. +.+.....|...||..|+..=+.. .-.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345679999987533 234445569999999999743322 2359999753
No 112
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=62.51 E-value=1.7 Score=29.88 Aligned_cols=44 Identities=30% Similarity=0.706 Sum_probs=27.0
Q ss_pred eeeeecccccCCceeeecCCCCccccHhHHHHHHhc-----CCCCCCCCc
Q 043807 68 ECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-----HTICPVCRS 112 (242)
Q Consensus 68 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 112 (242)
.|.||...-.. ..+..-..|...||..|+..=|.. .=.||.|..
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 35566654322 334444569999999999854432 336888864
No 113
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=62.11 E-value=1.7 Score=35.53 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=30.3
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHhc----CCCCCCCCcCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----HTICPVCRSPV 114 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~i 114 (242)
+..|.+|... ++ +.....|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3579999854 23 3334458899999999754432 33699998653
No 114
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.50 E-value=4.7 Score=27.61 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=23.9
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHH
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGN 99 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 99 (242)
+..|.+|...|..-..--....||++||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4589999999875332223336999999998643
No 115
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=61.49 E-value=3.7 Score=31.83 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=23.9
Q ss_pred cCCceeeeeccccc-CCceeeecCCCCccccHhHHH
Q 043807 64 VDQSECVICLGELE-DGEMVRLLPSCRHAFHVQCIG 98 (242)
Q Consensus 64 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~Fh~~Ci~ 98 (242)
.++..|.+|...|. .+..-.....|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999983 222233444599998887754
No 116
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.41 E-value=4 Score=31.10 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=24.2
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHH
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGN 99 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 99 (242)
...|.+|...|..-..--....||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999975432223336999999999654
No 117
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=61.27 E-value=4.1 Score=27.14 Aligned_cols=43 Identities=33% Similarity=0.568 Sum_probs=29.9
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVC 110 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~C 110 (242)
..|.-|+..|.+.. ...-+.|++.||.+|=.---..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986432 34466799999999954322334579987
No 118
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.04 E-value=0.79 Score=35.09 Aligned_cols=49 Identities=16% Similarity=0.420 Sum_probs=31.1
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSP 113 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 113 (242)
....|..|...|..-..--....||.+||..|..........|-.|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3457999999986533222334699999999987665556677777553
No 119
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=60.04 E-value=4.8 Score=28.34 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=25.4
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNW 100 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 100 (242)
+...|.+|...|..-..--....||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456799999999754322233369999999997553
No 120
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=59.73 E-value=4.4 Score=29.02 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNW 100 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 100 (242)
+...|.+|...|..-..--....||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999998753322233469999999997654
No 121
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.21 E-value=5.9 Score=27.86 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIG 98 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~ 98 (242)
+...|.+|...|..-..--....||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4457999999986432222233599999998853
No 122
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.63 E-value=4.2 Score=33.74 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGN 99 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 99 (242)
++..|.+|...|..-..--....||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45789999999875432223346999999988654
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=55.61 E-value=2 Score=29.28 Aligned_cols=46 Identities=20% Similarity=0.502 Sum_probs=29.3
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHH---hcCCCCCCCCc
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWL---LGHTICPVCRS 112 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl---~~~~~CP~CR~ 112 (242)
+...| ||......+..+..- .|...||..|+.--- .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCC
Confidence 45568 998876533344333 499999999985321 13456888754
No 124
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.61 E-value=11 Score=28.93 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=30.9
Q ss_pred cCCceeeeecccccCCceeeecCCCCccccHhHHHHHH------h-----cCCCCCCCCc
Q 043807 64 VDQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWL------L-----GHTICPVCRS 112 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl------~-----~~~~CP~CR~ 112 (242)
..+..|.||.+. ..+..-..|...||..||..-+ . ..-.|++|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 455679999875 2244445699999999999642 1 2247999954
No 125
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.31 E-value=6.1 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=25.4
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNW 100 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 100 (242)
+...|.+|...|..-..--....||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 445799999998754322233369999999997653
No 126
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=55.19 E-value=7.4 Score=24.41 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHhh
Q 043807 3 AIVAYHLIVKYLMMRRR 19 (242)
Q Consensus 3 iiv~~~li~~~~~~rrr 19 (242)
+++++.+.+++|++||+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 34444444455555444
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.88 E-value=4.9 Score=33.62 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=25.7
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNW 100 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 100 (242)
++..|.+|...|..-..--....||++||..|...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999998754322334469999999997543
No 128
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.63 E-value=3.1 Score=29.13 Aligned_cols=44 Identities=32% Similarity=0.693 Sum_probs=28.2
Q ss_pred eeeeecccccCCceeeecCCCCccccHhHHHHHHhc-----CCCCCCCCc
Q 043807 68 ECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-----HTICPVCRS 112 (242)
Q Consensus 68 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 112 (242)
.|.||...-..+ .+..-..|...||..|+..=|.. .-.||.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887653333 34444569999999999853331 235888854
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=53.48 E-value=7.5 Score=28.90 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=22.9
Q ss_pred ceeeeeccccc------CCceeeecCCCCccccHhHHHHH
Q 043807 67 SECVICLGELE------DGEMVRLLPSCRHAFHVQCIGNW 100 (242)
Q Consensus 67 ~~C~ICl~~~~------~~~~~~~lp~C~H~Fh~~Ci~~w 100 (242)
..|.||+..-. +++.+..-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 36899987541 12234444459999999999754
No 130
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=52.69 E-value=2.3 Score=29.85 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=26.1
Q ss_pred eeeecccccCCceeeecCCCCccccHhHHHHHHhc----C-CCCCCCCc
Q 043807 69 CVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG----H-TICPVCRS 112 (242)
Q Consensus 69 C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~-~~CP~CR~ 112 (242)
|.||...-.. +.+..-..|...||..|+..-|.. . -.||.|+.
T Consensus 29 C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4555444322 334444569999999999865432 2 36888864
No 131
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=52.43 E-value=5.4 Score=29.46 Aligned_cols=11 Identities=36% Similarity=1.057 Sum_probs=10.5
Q ss_pred ccHhHHHHHHh
Q 043807 92 FHVQCIGNWLL 102 (242)
Q Consensus 92 Fh~~Ci~~wl~ 102 (242)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 132
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=52.23 E-value=5.5 Score=29.39 Aligned_cols=11 Identities=36% Similarity=1.241 Sum_probs=10.5
Q ss_pred ccHhHHHHHHh
Q 043807 92 FHVQCIGNWLL 102 (242)
Q Consensus 92 Fh~~Ci~~wl~ 102 (242)
||+.|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 133
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=52.14 E-value=7.7 Score=28.85 Aligned_cols=47 Identities=23% Similarity=0.565 Sum_probs=30.4
Q ss_pred cCCceeeeecccccCCceeeecC--CCCccccHhHHHHHHhc----CCCCCCCCcCCCC
Q 043807 64 VDQSECVICLGELEDGEMVRLLP--SCRHAFHVQCIGNWLLG----HTICPVCRSPVAD 116 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~i~~ 116 (242)
..+..|.+|.+. ++ +..-. .|...||..|+. |.. .-.||.|...+-.
T Consensus 13 ~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 456789999842 33 33443 488999999997 432 2358877655543
No 134
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=51.38 E-value=3.1 Score=37.56 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHh-------cCCCCCCCCcCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL-------GHTICPVCRSPV 114 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-------~~~~CP~CR~~i 114 (242)
....|.+|...|..-..-.....||++||..|...++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34579999999864322222335999999999976642 134566665443
No 135
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=49.26 E-value=4.7 Score=30.04 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=17.8
Q ss_pred CCCccccHhHHHHHHhcCCCCCCCCcCCCCCC
Q 043807 87 SCRHAFHVQCIGNWLLGHTICPVCRSPVADQP 118 (242)
Q Consensus 87 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 118 (242)
.||+.|. .-+.....||.|+......+
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 4888882 11234568999998776543
No 136
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.11 E-value=7 Score=27.82 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=34.6
Q ss_pred CCceeeeecccccC-CceeeecCCCCccccHhHHHHHHh--------cCCCCCCCCcCC
Q 043807 65 DQSECVICLGELED-GEMVRLLPSCRHAFHVQCIGNWLL--------GHTICPVCRSPV 114 (242)
Q Consensus 65 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~--------~~~~CP~CR~~i 114 (242)
.+..|.||...-.. ++.+...-.|...||..|+..-|. ..-.|+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 34679999986432 234555566999999999976442 234699997654
No 137
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.69 E-value=13 Score=24.89 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=31.0
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
....|+.|-..+..++.+.. -+..||..| ..|-.|..+|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 34689999999987665542 577899877 579999888853
No 138
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=45.71 E-value=11 Score=25.80 Aligned_cols=45 Identities=31% Similarity=0.725 Sum_probs=28.0
Q ss_pred CCceeeeecccccCCceeeecCC--CC-ccccHhHHHHHHh----cCCCCCCCCcCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPS--CR-HAFHVQCIGNWLL----GHTICPVCRSPV 114 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~----~~~~CP~CR~~i 114 (242)
+..-| ||..... ++ .+..-. |. ..||..|+. |. ..-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8988643 33 333334 55 689999996 32 245799997643
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=44.54 E-value=5 Score=33.95 Aligned_cols=44 Identities=30% Similarity=0.706 Sum_probs=25.5
Q ss_pred eeeeecccccCCceeeecCCCCccccHhHHHHHHhc-----CCCCCCCCc
Q 043807 68 ECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLG-----HTICPVCRS 112 (242)
Q Consensus 68 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 112 (242)
.|.+|...-.. ........|...||..|+.+=|.. .-.||.|..
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 47777764322 234444569999999999854432 235999964
No 140
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.03 E-value=18 Score=23.64 Aligned_cols=40 Identities=25% Similarity=0.555 Sum_probs=28.1
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
..|+.|...+...+.+... -+..||..| ..|-.|..+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4799999998865433222 567888877 478888887743
No 141
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.97 E-value=11 Score=25.28 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=5.0
Q ss_pred ceeeeeccccc
Q 043807 67 SECVICLGELE 77 (242)
Q Consensus 67 ~~C~ICl~~~~ 77 (242)
..|..|...+.
T Consensus 28 F~C~~C~~~L~ 38 (76)
T 1iml_A 28 LKCEKCGKTLT 38 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCccccCccCC
Confidence 34444444443
No 142
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.65 E-value=9.3 Score=27.59 Aligned_cols=45 Identities=31% Similarity=0.725 Sum_probs=27.6
Q ss_pred CCceeeeecccccCCceeeecCC--CC-ccccHhHHHHHHh----cCCCCCCCCcCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPS--CR-HAFHVQCIGNWLL----GHTICPVCRSPV 114 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~----~~~~CP~CR~~i 114 (242)
+..-| ||..... ++ .+..-. |. ..||..|+. |. .+-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34557 9988653 32 222223 54 579999996 32 245799997643
No 143
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=42.44 E-value=17 Score=32.72 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=30.3
Q ss_pred ceeeeecccccCCceeeecCCCCcc--ccHhHHHHHHh--cCCCCCCCCcCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHA--FHVQCIGNWLL--GHTICPVCRSPVA 115 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~--Fh~~Ci~~wl~--~~~~CP~CR~~i~ 115 (242)
..|+|-...+..+ ++... |.|. |-..-+..+.. ..-.||+|...+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4688877777654 66665 9998 55443333332 2457999988774
No 144
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.39 E-value=18 Score=23.74 Aligned_cols=41 Identities=22% Similarity=0.521 Sum_probs=28.7
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
...|+.|...+...+.+. . .-+..||..| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-E-YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-C-STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-E-ECccccCccc--------CeECCCCCcCCC
Confidence 357999999988643332 2 2577899877 478889887753
No 145
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.58 E-value=27 Score=23.47 Aligned_cols=40 Identities=18% Similarity=0.490 Sum_probs=29.1
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
..|+.|...+..++.+.. .-+..||..| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCC
Confidence 579999999886554332 2567899877 578899888753
No 146
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.06 E-value=24 Score=23.40 Aligned_cols=42 Identities=21% Similarity=0.522 Sum_probs=29.6
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
....|+-|...+...+.+... -+..||..| ..|-.|..++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 446899999998754433222 567889877 578889887753
No 147
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.06 E-value=26 Score=23.92 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=30.3
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVADQ 117 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 117 (242)
....|+.|...+...+.+. . -+..||..| ..|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 4467999999987655443 2 567899888 4688888877543
No 148
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.11 E-value=26 Score=22.90 Aligned_cols=40 Identities=25% Similarity=0.556 Sum_probs=26.8
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
...|+.|-..+...+.+.. . =+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccC--------CcccccCCcCC
Confidence 3578889888775332222 2 567888877 46888888774
No 149
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.79 E-value=16 Score=24.90 Aligned_cols=40 Identities=25% Similarity=0.600 Sum_probs=30.1
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
....|+-|-..+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34579999999976665543 467899877 57889988774
No 150
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.40 E-value=24 Score=23.12 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=28.1
Q ss_pred CceeeeecccccC--CceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 66 QSECVICLGELED--GEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 66 ~~~C~ICl~~~~~--~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
...|+-|-..+.. ++.+. . .-+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~-a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-S-FEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-E-CSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceE-E-ECCcccCccc--------CEeccCCCcCC
Confidence 3579999998875 22232 2 2678899887 47889988875
No 151
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.51 E-value=25 Score=28.01 Aligned_cols=43 Identities=30% Similarity=0.559 Sum_probs=29.2
Q ss_pred CCceeeeecccccCCceeeecC--CCCccccHhHHHHHHhc----------CCCCCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLP--SCRHAFHVQCIGNWLLG----------HTICPVCR 111 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl~~----------~~~CP~CR 111 (242)
.+..|.||-+. ..+.... .|...||..||..++.. .=.|=+|.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 45568888764 3344443 58899999999988742 22577774
No 152
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.09 E-value=16 Score=28.87 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=22.6
Q ss_pred CCceeeeeccccc--CCceeeecCCCCccccHhHH
Q 043807 65 DQSECVICLGELE--DGEMVRLLPSCRHAFHVQCI 97 (242)
Q Consensus 65 ~~~~C~ICl~~~~--~~~~~~~lp~C~H~Fh~~Ci 97 (242)
++..|++|...|. .+... +...|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~-~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRR-QCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCE-ECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCC-cCCCCCchhhcccc
Confidence 4678999999863 23333 33359999998886
No 153
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.03 E-value=15 Score=24.79 Aligned_cols=47 Identities=26% Similarity=0.463 Sum_probs=30.3
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHH----hcCCCCCCCCcC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWL----LGHTICPVCRSP 113 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl----~~~~~CP~CR~~ 113 (242)
...| ||.....+++..+....|..-||..|+.--- .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3468 7988765554333333598999999985421 234678888753
No 154
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.60 E-value=33 Score=23.74 Aligned_cols=40 Identities=23% Similarity=0.551 Sum_probs=29.8
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
...|+-|-..+...+.+. .-+..||..| ..|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCC--------CeeCCCCCCCCC
Confidence 457999999998665443 2678899887 468888887754
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.97 E-value=32 Score=22.83 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=27.5
Q ss_pred ceeeeecccccC--CceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 67 SECVICLGELED--GEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 67 ~~C~ICl~~~~~--~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
..|+.|-..+.. +..+. .. -+..||..| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI-CF-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeE-EE-CCcccCccc--------CChhhCCCcCC
Confidence 479999998875 22232 22 577899888 47888888775
No 156
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.91 E-value=6.8 Score=24.88 Aligned_cols=41 Identities=20% Similarity=0.490 Sum_probs=24.7
Q ss_pred eecccccCCceeeecCCCCccccHhHHHHHH---hcCCCCCCCCc
Q 043807 71 ICLGELEDGEMVRLLPSCRHAFHVQCIGNWL---LGHTICPVCRS 112 (242)
Q Consensus 71 ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl---~~~~~CP~CR~ 112 (242)
||......+..+.-- .|..-||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcC-CCCccccccccCCCcccCCCcEECcCCCC
Confidence 566655433333333 488899999985322 23467888864
No 157
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.53 E-value=11 Score=27.79 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=23.9
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
..|++|..++.... ++.+|..|-.. +.....||-|..++.
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 68999998875322 22223333222 234567999988773
No 158
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.89 E-value=31 Score=22.23 Aligned_cols=42 Identities=21% Similarity=0.567 Sum_probs=30.1
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
....|+.|...+...+.+.. . =+..||..|. .|-.|..++..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~-~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-S-NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-E-TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEE-e-CcCeeCcCCC--------cccCCCCCCCC
Confidence 34589999999987665432 2 5677898874 68888887753
No 159
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.67 E-value=34 Score=23.10 Aligned_cols=40 Identities=13% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
....|+-|-..+. ++.+ . .-+..||..| ..|-.|..+|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--I-FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--C-CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEE--E-ECcceeCCCC--------CEeCCCCCccCC
Confidence 3467999999887 3332 2 3677888877 579999888853
No 160
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.04 E-value=29 Score=22.24 Aligned_cols=38 Identities=24% Similarity=0.587 Sum_probs=27.8
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
...|+.|...+. ++. +.. -+..||..| ..|-.|..++.
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCC
Confidence 357999999887 443 232 677899877 57889988875
No 161
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.04 E-value=19 Score=20.27 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=18.8
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhH
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQC 96 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~C 96 (242)
..|+.|-..+-..+.+. .=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 47999988876554443 2567889887
No 162
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.01 E-value=23 Score=26.14 Aligned_cols=37 Identities=22% Similarity=0.533 Sum_probs=25.3
Q ss_pred eeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCC
Q 043807 68 ECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPV 114 (242)
Q Consensus 68 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i 114 (242)
.|+.|...+...+.+.. .-++.||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCC
Confidence 68888888875443321 2567788877 4688888777
No 163
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.40 E-value=20 Score=25.34 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=7.3
Q ss_pred ceeeeecccccC
Q 043807 67 SECVICLGELED 78 (242)
Q Consensus 67 ~~C~ICl~~~~~ 78 (242)
..|+.|..++..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 357777766643
No 164
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=29.31 E-value=10 Score=35.56 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=29.9
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHh-----cCCCCCCCCcC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLL-----GHTICPVCRSP 113 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~ 113 (242)
...| ||...+..+...+..-.|.--||..|+.---. ....||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3456 89887653333333335999999999943211 24679999854
No 165
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.34 E-value=5.3 Score=27.90 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=13.7
Q ss_pred CCCccccHhHHHHHHh
Q 043807 87 SCRHAFHVQCIGNWLL 102 (242)
Q Consensus 87 ~C~H~Fh~~Ci~~wl~ 102 (242)
.|+|.||..|...|=.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5999999999988843
No 166
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.33 E-value=26 Score=24.48 Aligned_cols=33 Identities=18% Similarity=0.432 Sum_probs=21.0
Q ss_pred cCCceeeeecccccC-CceeeecCCCCccccHhH
Q 043807 64 VDQSECVICLGELED-GEMVRLLPSCRHAFHVQC 96 (242)
Q Consensus 64 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~C 96 (242)
..+..|+.|...|.- .+.-.+.+.|.|..|..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 456789999998742 111223335888777766
No 167
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.88 E-value=9.3 Score=22.76 Aligned_cols=15 Identities=27% Similarity=0.467 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHh
Q 043807 4 IVAYHLIVKYLMMRR 18 (242)
Q Consensus 4 iv~~~li~~~~~~rr 18 (242)
++++.+.+..|++||
T Consensus 20 ~vii~l~~~~~iRRr 34 (35)
T 1iij_A 20 FLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHTTTTTHHHHHC
T ss_pred HHHHHHHhheEEeec
Confidence 333444444555544
No 168
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.54 E-value=15 Score=24.86 Aligned_cols=40 Identities=28% Similarity=0.564 Sum_probs=28.4
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
...|+.|...+..++.+.. -+..||..| ..|-.|..+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 4579999999876664432 567888877 468888887743
No 169
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.07 E-value=25 Score=23.94 Aligned_cols=30 Identities=20% Similarity=0.544 Sum_probs=22.9
Q ss_pred CCceeeeecccccCCceeeecCCC-CccccHhHHHH
Q 043807 65 DQSECVICLGELEDGEMVRLLPSC-RHAFHVQCIGN 99 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C-~H~Fh~~Ci~~ 99 (242)
+..-|.||.++-. ++.+. | +-.||..|..+
T Consensus 7 e~pWC~ICneDAt----lrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNEDAT----LRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSCCC----EEETT-TTSEEECSSHHHH
T ss_pred CCCeeEEeCCCCe----EEecC-CCCceehHHHHHH
Confidence 3456999999843 66776 9 78999999766
No 170
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.89 E-value=33 Score=31.14 Aligned_cols=44 Identities=20% Similarity=0.526 Sum_probs=29.9
Q ss_pred CCceeeeecccccCCceeeecC--CCCccccHhHHHHHHhc----------CCCCCCCCc
Q 043807 65 DQSECVICLGELEDGEMVRLLP--SCRHAFHVQCIGNWLLG----------HTICPVCRS 112 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl~~----------~~~CP~CR~ 112 (242)
.+..|.+|-+.- .+.... .|...||..||..++.. .=.|=+|.-
T Consensus 92 ~~~yCr~C~~Gg----~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSGE----TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCCS----SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCCC----eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 455688887642 244444 59999999999998732 336878863
No 171
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.74 E-value=6.9 Score=27.57 Aligned_cols=18 Identities=33% Similarity=0.966 Sum_probs=14.0
Q ss_pred eecCCCCccccHhHHHHH
Q 043807 83 RLLPSCRHAFHVQCIGNW 100 (242)
Q Consensus 83 ~~lp~C~H~Fh~~Ci~~w 100 (242)
+..+.|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 455569999998888777
No 172
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=26.48 E-value=14 Score=24.27 Aligned_cols=42 Identities=33% Similarity=0.767 Sum_probs=25.5
Q ss_pred CceeeeecccccCCceeeecCC--CC-ccccHhHHHHHHh----cCCCCCCCCc
Q 043807 66 QSECVICLGELEDGEMVRLLPS--CR-HAFHVQCIGNWLL----GHTICPVCRS 112 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~----~~~~CP~CR~ 112 (242)
..-| ||..... ++ .+..-. |. ..||..|+. |. ..-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 8988643 33 333334 44 679999997 32 2346888854
No 173
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.98 E-value=15 Score=24.01 Aligned_cols=43 Identities=30% Similarity=0.701 Sum_probs=26.3
Q ss_pred CCceeeeecccccCCceeeecCC--CC-ccccHhHHHHHHh----cCCCCCCCCc
Q 043807 65 DQSECVICLGELEDGEMVRLLPS--CR-HAFHVQCIGNWLL----GHTICPVCRS 112 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~----~~~~CP~CR~ 112 (242)
+..-| ||..... ++ .+.-.. |. ..||..|+. +. ..-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34457 8988643 33 333334 55 689999997 22 2346888854
No 174
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.88 E-value=26 Score=26.09 Aligned_cols=38 Identities=21% Similarity=0.621 Sum_probs=28.8
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
..|+-|-..+.....+. .-+..||..| ..|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLY---AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEE---ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEE---eCCcEEcccc--------cCcCcCCCccc
Confidence 57999999987643333 2678899888 57999998885
No 175
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.78 E-value=34 Score=22.93 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=28.3
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
....|+-|-..+.. +.+ . .-+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV--K-LRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE--E-CSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEE--E-ECcceeCcCc--------CeeCCCCCCCC
Confidence 34689999999875 322 2 2678899888 47888988774
No 176
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.02 E-value=47 Score=21.95 Aligned_cols=37 Identities=24% Similarity=0.553 Sum_probs=26.5
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
..|+-|-..+.. +. +. .-+..||..| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~~--v~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RV--LE-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CC--BC-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-ee--EE-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 478889888875 22 22 3677889877 57888888775
No 177
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.39 E-value=47 Score=21.47 Aligned_cols=39 Identities=23% Similarity=0.594 Sum_probs=27.1
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
...|+.|-..+.. +.+.. -+..||..| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCC
Confidence 3579999988873 33322 567888877 468888887754
No 178
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.82 E-value=49 Score=21.35 Aligned_cols=38 Identities=26% Similarity=0.634 Sum_probs=27.1
Q ss_pred CceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 66 QSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 66 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
...|+.|...+.. +.+ .. -+..||..| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 3579999998874 332 22 577888877 46888988874
No 179
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.58 E-value=41 Score=23.14 Aligned_cols=40 Identities=18% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
....|+.|-..+. ++.+. . -+..||..| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 3467999999985 33333 2 678899887 578999988853
No 180
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.53 E-value=6.3 Score=26.14 Aligned_cols=36 Identities=25% Similarity=0.599 Sum_probs=20.7
Q ss_pred ceeeeecccccCCceeeecC--C--CCccccHhHHHHHHh
Q 043807 67 SECVICLGELEDGEMVRLLP--S--CRHAFHVQCIGNWLL 102 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp--~--C~H~Fh~~Ci~~wl~ 102 (242)
-.|+-|...++..+..-.+. . |++.||..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 46888888876543221221 2 566666666666643
No 181
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.36 E-value=65 Score=23.52 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=33.7
Q ss_pred CCceeeeecccccC-CceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELED-GEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
.-..|..|...+.+ +.... . .=+..||..|..+.+.....|-.|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 34578888888753 22222 2 256788999988876655589999888854
No 182
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.43 E-value=16 Score=20.59 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=8.4
Q ss_pred CCCCCCCCcCCC
Q 043807 104 HTICPVCRSPVA 115 (242)
Q Consensus 104 ~~~CP~CR~~i~ 115 (242)
+..||+|+..++
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 346899987654
No 183
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.40 E-value=43 Score=22.45 Aligned_cols=38 Identities=32% Similarity=0.774 Sum_probs=27.4
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
..|+.|...+.. +.+. .-+..||..| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS---ALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEecc-ceEE---ECCceeCccC--------CccccCCCCCCC
Confidence 479999998873 3333 2578899877 578889887753
No 184
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=22.32 E-value=58 Score=21.41 Aligned_cols=40 Identities=23% Similarity=0.488 Sum_probs=27.9
Q ss_pred ceeeeecccccC---CceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 67 SECVICLGELED---GEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 67 ~~C~ICl~~~~~---~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
..|+-|...+.. +..... . =+..||..| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCC
Confidence 579999999884 222222 2 467899877 578999888853
No 185
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.68 E-value=60 Score=22.19 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=29.1
Q ss_pred CCceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCCC
Q 043807 65 DQSECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVAD 116 (242)
Q Consensus 65 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 116 (242)
....|+.|...+.. +.+ . .-+..||..| ..|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--K-ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--E-SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEE--E-ECCceECccC--------CEecCCCCCCCC
Confidence 34579999999875 322 2 2678899887 579999888853
No 186
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.35 E-value=50 Score=22.09 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=27.0
Q ss_pred ceeeeecccccCCceeeecCCCCccccHhHHHHHHhcCCCCCCCCcCCC
Q 043807 67 SECVICLGELEDGEMVRLLPSCRHAFHVQCIGNWLLGHTICPVCRSPVA 115 (242)
Q Consensus 67 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 115 (242)
..|+.|...+..++.+. . .=+..||..| ..|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~-~-a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL-F-YEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBC-C-CSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEE-E-eCCccccccC--------CeecCCCCccC
Confidence 47999999887433332 2 2467888877 46888988775
No 187
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.54 E-value=91 Score=21.55 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=5.1
Q ss_pred CCCCCCCcCC
Q 043807 105 TICPVCRSPV 114 (242)
Q Consensus 105 ~~CP~CR~~i 114 (242)
..|..|..+|
T Consensus 67 ~~C~~C~~~I 76 (101)
T 2cup_A 67 PKCKGCFKAI 76 (101)
T ss_dssp CBCSSSCCBC
T ss_pred CccccCCCcc
Confidence 3455555544
Done!