BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043808
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/208 (52%), Positives = 139/208 (66%), Gaps = 9/208 (4%)
Query: 1 GYGMTETCGVVTVENPLLGVQN------SGSAGRLVAGVEAQIVCVDTLKPLPPNQVGEL 54
GYGMTE V+ + LG SG+ G +V E +IV DT L NQ GE+
Sbjct: 376 GYGMTEAGPVLAMS---LGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEI 432
Query: 55 WVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
+RG +M GY NN AT IDK+GWLHTGD+G D+ +LFIVDR+KELIK GFQVA
Sbjct: 433 CIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVA 492
Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYK 174
PAELE +L+ HP+I D V+ + AGEVP+A+VV+S +S L+++DV++FV KQV YK
Sbjct: 493 PAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYK 552
Query: 175 RLRNVTFTNSIPKTTSGKILRRELIAKL 202
R+ V FT SIPK SGKILR++L AKL
Sbjct: 553 RINKVFFTESIPKAPSGKILRKDLRAKL 580
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GYG+TET + + G G++G++V +A+++ +DT K L PN+ GE+ V+GP+
Sbjct: 341 GYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
LM GY NN +ATK +ID+EGWLHTGD+GY+DE FIVDR+K LIK G+QV PAELE
Sbjct: 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELES 458
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
VL+ HP I DA V PDP AGE+P A VV ++T+++V +V QV+ KRLR V
Sbjct: 459 VLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGV 518
Query: 180 TFTNSIPKTTSGKILRREL 198
F + +PK +GKI R +
Sbjct: 519 RFVDEVPKGLTGKIDGRAI 537
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GYG+TET + + G G++G++V +A+++ +DT K L PN+ GE+ V+GP+
Sbjct: 341 GYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
LM GY NN +ATK +ID+EGWLHTGD+GY+DE FIVDR+K LIK G+QV PAELE
Sbjct: 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELES 458
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
VL+ HP I DA V PDP AGE+P A VV ++T+++V +V QV+ KRLR V
Sbjct: 459 VLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGV 518
Query: 180 TFTNSIPKTTSGKILRREL 198
F + +PK +GKI R +
Sbjct: 519 RFVDEVPKGLTGKIDGRAI 537
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GYG+TET + + G G++G++V +A+++ +DT K L PN+ GE+ V+GP+
Sbjct: 341 GYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
LM GY NN +ATK +ID+EGWLHTGD+GY+DE FIVDR+K LIK G+QV PAELE
Sbjct: 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELES 458
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
VL+ HP I DA V PDP AGE+P A VV ++T+++V +V QV+ KRLR V
Sbjct: 459 VLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGV 518
Query: 180 TFTNSIPKTTSGKILRREL 198
F + +PK +GKI R +
Sbjct: 519 RFVDEVPKGLTGKIDGRAI 537
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 130/199 (65%), Gaps = 2/199 (1%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GYG+TET + + P G+ G++V A+IV +DT K L NQ GEL V+GP+
Sbjct: 373 GYGLTETTSAIII-TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPM 431
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
+M GY NN +AT +IDK+GWLH+GD+ Y+D+ G FIVDR+K LIK G+QV PAELE
Sbjct: 432 IMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELES 491
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
+L+ HP I DA V PDP+AGE+P A VV ++T+++V +V QV KRLR V
Sbjct: 492 ILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGV 551
Query: 180 TFTNSIPKTTSGKILRREL 198
F + +PK +GKI R++
Sbjct: 552 KFVDEVPKGLTGKIDARKI 570
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GYG+TET + + G G+ G++V EA++V +DT K L NQ GEL VRGP+
Sbjct: 339 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 396
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
+M GY NN +AT +IDK+GWLH+GD+ Y+DE FIVDR+K LIK G+QVAPAELE
Sbjct: 397 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 456
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
+L+ HP I DA V PD +AGE+P A VV ++T++++ +V QV K+LR V
Sbjct: 457 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 516
Query: 180 TFTNSIPKTTSGKILRREL 198
F + +PK +GK+ R++
Sbjct: 517 VFVDEVPKGLTGKLDARKI 535
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GYG+TET + + G G+ G++V EA++V +DT K L NQ GEL VRGP+
Sbjct: 339 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 396
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
+M GY NN +AT +IDK+GWLH+GD+ Y+DE FIVDR+K LIK G+QVAPAELE
Sbjct: 397 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 456
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
+L+ HP I DA V PD +AGE+P A VV ++T++++ +V QV K+LR V
Sbjct: 457 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 516
Query: 180 TFTNSIPKTTSGKILRREL 198
F + +PK +GK+ R++
Sbjct: 517 VFVDEVPKGLTGKLDARKI 535
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 140/207 (67%), Gaps = 7/207 (3%)
Query: 1 GYGMTETCGVVTV-----ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELW 55
GYGMTE V+ + + P G+ G +V E +IV +T LP NQ GE+
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPF--DIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEIC 386
Query: 56 VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
+RG +M GY N+ +AT IDKEGWLHTGD+GY D+ +LFIVDR+KELIK GFQVAP
Sbjct: 387 IRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 446
Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
AELE +L++HPEI DA V+ D +AGEVP+A+VV+S S T++++++++ KQV YKR
Sbjct: 447 AELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKR 506
Query: 176 LRNVTFTNSIPKTTSGKILRRELIAKL 202
++ V F +IPK SGKILR+ L KL
Sbjct: 507 IKRVFFIEAIPKAPSGKILRKNLKEKL 533
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GYG+TET + + G G+ G++V EA++V +DT K L NQ GEL VRGP+
Sbjct: 344 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 401
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
+M GY NN +AT +IDK+GWLH+GD+ Y+DE FIVDR+K LIK G+QVAPAELE
Sbjct: 402 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 461
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
+L+ HP I DA V PD +AGE+P A VV ++T++++ +V QV K+LR V
Sbjct: 462 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 521
Query: 180 TFTNSIPKTTSGKILRREL 198
F + +PK +GK+ R++
Sbjct: 522 VFVDEVPKGLTGKLDARKI 540
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 182 bits (463), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 129/199 (64%), Gaps = 3/199 (1%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GYG+TET + + G G+ G++V EA++V +DT K L NQ GEL VRGP+
Sbjct: 344 GYGLTETTSAILITPK--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPM 401
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
+M GY NN +AT +IDK+GWLH+GD+ Y+DE FIVDR+K LIK G QVAPAELE
Sbjct: 402 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELES 461
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
+L+ HP I DA V PD +AGE+P A VV ++T++++ +V QV K+LR V
Sbjct: 462 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 521
Query: 180 TFTNSIPKTTSGKILRREL 198
F + +PK +GK+ R++
Sbjct: 522 VFVDEVPKGLTGKLDARKI 540
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 7/206 (3%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
+G TE C VT NP L + S + G + +E +++ ++ + L + GE+ +RGP +
Sbjct: 335 WGXTEACPXVTT-NPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNI 393
Query: 62 MPGYFNNEQATK--LIIDKEG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
GY+ E+ + D++G + TGD+G+ DE G L DR+KE+IK G+ +AP E
Sbjct: 394 FKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE 453
Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN--SSLTKEDVQKFVVKQVARYKR 175
LE +L H + D VI PD EAGEVP A++V P + +ED+ ++V ++++ YKR
Sbjct: 454 LEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKR 513
Query: 176 LRNVTFTNSIPKTTSGKILRRELIAK 201
+R V F +P+T SGK+LRR L K
Sbjct: 514 VREVEFVEELPRTASGKLLRRLLREK 539
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
+G +ET G+ T P SAGR + +V + +PLPP +VGE+ +RGP +
Sbjct: 302 FGQSETSGLSTFA-PYR--DRPKSAGRPLFWRTVAVVDAED-RPLPPGEVGEIVLRGPTV 357
Query: 62 MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRI--KELIKCNGFQVAPAELE 119
GY+NN AT+ + GW HTGD+G FD G LF R KELIK G V PAE+E
Sbjct: 358 FKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVE 416
Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
G L HP I DAVVI PDP+ E A V P S+ + + +FV +ARYK+ ++V
Sbjct: 417 GALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHV 476
Query: 180 TFTNSIPKTTSGKILR 195
F ++PK G I R
Sbjct: 477 VFVEALPKDAKGAIDR 492
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 112/198 (56%), Gaps = 4/198 (2%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GY +TE+CG T+ ++ +GSAGR + + D + + + GE+ ++ I
Sbjct: 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDI 371
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
L+ Y+N +AT+ D GW TGD+G D+ G L+I DR+K++I G V PAE+E
Sbjct: 372 LLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIES 430
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
V++ P + + VI PD + GE+ A VV N ++++ + ++ ++ARYK + V
Sbjct: 431 VIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKKVI 489
Query: 181 FTNSIPKTTSGKILRREL 198
F +IP+ +GKIL+ L
Sbjct: 490 FAEAIPRNPTGKILKTVL 507
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 2/197 (1%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
YG TET NP G + G+ G + GV A++ +T K LP +G + V+GP +
Sbjct: 300 YGXTETN--XNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNV 357
Query: 62 MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
GY+ + TK +G+ TGDLG DE G + I+ R K+L+ GF V P E+E
Sbjct: 358 FKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESE 417
Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
+ + P ++++ VI P + GE A VVR +++ + V + Q+A++K + V F
Sbjct: 418 IDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIF 477
Query: 182 TNSIPKTTSGKILRREL 198
+ +P+ T GK+ + L
Sbjct: 478 VDDLPRNTXGKVQKNVL 494
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 107/201 (53%), Gaps = 6/201 (2%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD--TLKPLPPNQVGELWVRGP 59
YGMTET +V G +G+ G + GVE ++V D + L VGE+ VRGP
Sbjct: 304 YGMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGP 361
Query: 60 ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDR-IKELIKCNGFQVAPAEL 118
L Y N AT ++G+ TGD+ D G + IV R +LIK G+++ E+
Sbjct: 362 NLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEI 421
Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK-EDVQKFVVKQVARYKRLR 177
E L+ HPE+ +A V PDP+ GE +A++V + ++ + V ++A +KR R
Sbjct: 422 ENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPR 481
Query: 178 NVTFTNSIPKTTSGKILRREL 198
V + +++P+ GKI++R L
Sbjct: 482 VVRYLDAVPRNDMGKIMKRAL 502
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 10/208 (4%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQI--------VCVDTLKPLPPN--Q 50
GYG+TET VV +++ +L + + V + +P+P +
Sbjct: 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA 382
Query: 51 VGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNG 110
+GE+ ++GP + GY+ NE+AT+ + +G+ TGD+ +DE G + I DR+K+LIK G
Sbjct: 383 LGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGG 442
Query: 111 FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV 170
++ +LE L+ HP++ +A V+ P P+ E P+A VV +E + +
Sbjct: 443 EWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGF 502
Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
A+++ F IP+T++GK L+R L
Sbjct: 503 AKWQLPDAYVFAEEIPRTSAGKFLKRAL 530
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 2/192 (1%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
YGMTET + NP G + G+ G + GV A++ +T LP +G + V GP +
Sbjct: 300 YGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
Query: 62 MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
GY+ + T +G+ TGDLG DE G + I+ R +L+ GF V P E+E
Sbjct: 358 FXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
+ + P ++++ VI P + GE A VVR +++ + V + Q+A + V F
Sbjct: 418 IDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIF 477
Query: 182 TNSIPKTTSGKI 193
+ +P+ T G +
Sbjct: 478 VDDLPRNTMGAV 489
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 5/195 (2%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
YGMTET + NP G + G+ G + GV A++ +T LP +G + V GP +
Sbjct: 300 YGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
Query: 62 MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
GY+ + T +G+ TGDLG DE G + I+ R +L+ GF V P E+E
Sbjct: 358 FXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN---SSLTKEDVQKFVVKQVARYKRLRN 178
+ + P ++++ VI P + GE A+VV S + E++ FV ++A +
Sbjct: 418 IDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXX 477
Query: 179 VTFTNSIPKTTSGKI 193
V F + +P+ T G +
Sbjct: 478 VIFVDDLPRNTMGAV 492
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR-GPI 60
YG TET G+ + + + ++ G G + + QI+ D LPP G++ +R PI
Sbjct: 354 YGQTET-GLTCMVSKTMKIK-PGYMGTAASCYDVQII-DDKGNVLPPGTEGDIGIRVKPI 410
Query: 61 ----LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
+ GY +N T I + WL GD G DE G + R ++I +G+++ P+
Sbjct: 411 RPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPS 469
Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN------SSLTKEDVQKFVVKQV 170
E+E L+ HP +++ VI PDP GEV A+VV + LTKE +Q+ V
Sbjct: 470 EVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE-LQQHVKSVT 528
Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
A YK R + F ++PKT +GKI R AKLR K
Sbjct: 529 APYKYPRKIEFVLNLPKTVTGKIQR----AKLRDK 559
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR-GPI 60
YG TET G+ + + + ++ G G + + QI+ D LPP G++ +R PI
Sbjct: 354 YGQTET-GLTCMVSKTMKIK-PGYMGTAASCYDVQII-DDKGNVLPPGTEGDIGIRVKPI 410
Query: 61 ----LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
+ GY +N T I + WL GD G DE G + R ++I +G+++ P+
Sbjct: 411 RPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPS 469
Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN------SSLTKEDVQKFVVKQV 170
E+E L+ HP +++ VI PDP GEV A+VV + LTKE +Q+ V
Sbjct: 470 EVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE-LQQHVKSVT 528
Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
A YK R + F ++PKT +GKI R AKLR K
Sbjct: 529 APYKYPRKIEFVLNLPKTVTGKIQR----AKLRDK 559
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 12/213 (5%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR--- 57
G+G TET VVT+ GS G+ G + +++ D + + GE+ +
Sbjct: 372 GFGQTET--VVTIATFPWMEPKPGSIGKPTPGYKIELMDRDG-RLCEVGEEGEIVINTME 428
Query: 58 -GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
P+ + ++ + +G+ HTGD+ + DE G L+ V R ++IK +G++V P
Sbjct: 429 GKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPF 488
Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQKFVVKQVAR 172
E+E L+ HP +L+ + PDP G+V A +V +P+ SL K ++Q V A
Sbjct: 489 EVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSL-KNELQDHVKNVTAP 547
Query: 173 YKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
YK R + F +PKT SGKI R E+ K +S+
Sbjct: 548 YKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 2/192 (1%)
Query: 2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
YGMTET + NP G + G+ G + GV A++ +T LP +G + V GP +
Sbjct: 300 YGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
Query: 62 MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
GY+ + T +G+ TGDLG DE G + I+ R +L+ GF V P E+E
Sbjct: 358 FXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
+ + P ++++ VI P + GE A+VV + ++ V + Q+A + V F
Sbjct: 418 IDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIF 477
Query: 182 TNSIPKTTSGKI 193
+ +P+ T G +
Sbjct: 478 VDDLPRNTMGAV 489
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 14/200 (7%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQ--VGELWVRG 58
+GMTETC P + + G A V+ +I PN+ GEL ++G
Sbjct: 304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIK--------NPNKEGHGELMIKG 355
Query: 59 PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
+M GY T + G+ +TGD+ D G + I DR K+LI G + P ++
Sbjct: 356 ANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQI 413
Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN 178
E V P I DAV + PD G+VP Y V S ++K + ++ K +A+YK ++
Sbjct: 414 ETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVPKH 471
Query: 179 VTFTNSIPKTTSGKILRREL 198
+++P T++GK+ R +L
Sbjct: 472 FEKVDTLPYTSTGKLQRNKL 491
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 44 KPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
PLP +VG L RGP GY+ + Q D G+ +GDL D G + + R K
Sbjct: 375 NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREK 434
Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAY-VVRSPNSSLTKEDV 162
+ I G ++A E+E +L+ HP ++ A ++ D GE AY VV+ P L V
Sbjct: 435 DQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP---LRAVQV 491
Query: 163 QKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
++F+ +Q +A +K V +S+P T GK+ +++L L S+
Sbjct: 492 RRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 97/181 (53%), Gaps = 2/181 (1%)
Query: 25 SAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHT 84
+ GR ++ + + + + +P ++G L RGP GY+ + + + D++ + ++
Sbjct: 361 TQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS 420
Query: 85 GDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEV 144
GDL G L +V RIK+ I G ++A E+E +++ HPE++ A ++ D + GE
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK 480
Query: 145 PIAYVVRSPNSSLTKEDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR 203
A++V S N L +++ +++ +A+YK + S+P T GK+ +++L + L
Sbjct: 481 SCAFIV-SRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILN 539
Query: 204 S 204
+
Sbjct: 540 T 540
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 3/206 (1%)
Query: 2 YGMTE-TCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
+GM E +++P + N+ G+ ++ + V D + + P + G L RGP
Sbjct: 330 FGMAEGLVNYTRLDDPEEIIVNT--QGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPY 387
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
+ GY+ E+ ++G+ TGD+ G + + R K+ I G +VA E+E
Sbjct: 388 TIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVEN 447
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
L++HP + DA ++ PD GE +++ + E + +A YK V
Sbjct: 448 HLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVE 507
Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
F S P+T GK+ ++ L + K+
Sbjct: 508 FVESFPQTGVGKVSKKALREAISEKL 533
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 8/184 (4%)
Query: 19 GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDK 78
G G+ GR V G E ++ + +P +VG+L+++GP Y+NN + ++
Sbjct: 347 GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLG 405
Query: 79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPD 138
E W+ +GD +G R +++K +G V+P E+E VLV H +L+A V+
Sbjct: 406 E-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-- 462
Query: 139 PEAGEVPI-AYVVRSPN---SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKIL 194
G V A+VV S + E+++ FV ++A +K R++ F + +PKT +GKI
Sbjct: 463 DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQ 522
Query: 195 RREL 198
R +L
Sbjct: 523 RFKL 526
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 38 VCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLF 97
V D + + P + G L RGP + GY+ E+ ++G+ TGD+ G +
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424
Query: 98 IVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL 157
+ R K+ I G +VA E+E L++HP + DA + PD GE +++ +
Sbjct: 425 VEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPK 484
Query: 158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI 206
E + +A YK V F S P+T GK+ ++ L + K+
Sbjct: 485 AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64 GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
GY N QAT + ++GW T D+ + G + I+ R+ ++I G + P+E+E VL
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
+ P + + VVI D G+ A VV +L+ + + F ++A +KR +
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
+ +PK K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64 GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
GY N QAT + ++GW T D+ + G + I+ R+ ++I G + P+E+E VL
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
+ P + + VVI D G+ A VV +L+ + + F ++A +KR +
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
+ +PK K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64 GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
GY N QAT + ++GW T D+ + G + I+ R+ ++I G + P+E+E VL
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
+ P + + VVI D G+ A VV +L+ + + F ++A +KR +
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
+ +PK K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84 TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
+GD DE G +I R+ +++ +G ++ AE+E LV+HP+I +A V+ P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
AYV P+ L E V+ +V K++ + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64 GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
GY N QAT + ++GW T D+ + G + I+ R+ ++I G + P+E+E VL
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
+ P + + VVI D G+ A VV +L+ + + F ++A +KR +
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
+ +PK K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84 TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
+GD DE G +I R+ +++ +G ++ AE+E LV+HP+I +A V+ P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
AYV P+ L E V+ +V K++ + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84 TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
+GD DE G +I R+ +++ +G ++ AE+E LV+HP+I +A V+ P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
AYV P+ L E V+ +V K++ + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84 TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
+GD DE G +I R+ +++ +G ++ AE+E LV+HP+I +A V+ P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
AYV P+ L E V+ +V K++ + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84 TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
+GD DE G +I R+ +++ +G ++ AE+E LV+HP+I +A V+ P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
AYV P+ L E V+ +V K++ + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84 TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
+GD DE G +I R+ +++ +G ++ AE+E LV+HP+I +A V+ P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
AYV P+ L E V+ +V K++ + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64 GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
GY N +AT + ++GW T D+ + G + I+ R+ ++I G + P+E+E VL
Sbjct: 364 GYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
+ P + + VVI D G+ A VV +L+ + + F ++A +KR +
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
+ +PK K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 64 GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
GY N QAT + ++GW T D+ + G + I+ R+ + I G + P+E+E VL
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
+ P + + VVI D G+ A VV +L+ + + F ++A +KR +
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
+ +PK K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 14/213 (6%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSA---GRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
GYG E+ G T + ++ SG+A G +AG A ++ D LKP +GEL+V
Sbjct: 358 GYGPAESMGFTT-HHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVA 415
Query: 58 GPILMPGYFNNEQ--ATKLIID------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
G L GY + A + + D E TGDL G L V R + +K
Sbjct: 416 GAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIR 475
Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV-RSPNSSLTKEDVQKFVVK 168
GF+V P E+E LV HP + A V+ + +AYVV ++ ++++ V +
Sbjct: 476 GFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAE 535
Query: 169 QVARYKRLRNVTFTNSIPKTTSGKILRRELIAK 201
+ Y + +P+T +GK+ RR L
Sbjct: 536 ALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 84 TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
+GD DE G +I R+ +++ +G ++ AE+E LV+HP+I +A V+ P G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
AYV P+ L E V+ +V K++ + +T+S+PKT SG I+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRIL 615
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 45 PLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKE 104
P+ VG + + GP L GYF + Q ++ I GWL TGDLGY + G L++ RIK+
Sbjct: 404 PVAERVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYLLD-GYLYVTGRIKD 461
Query: 105 LIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQ- 163
LI G + P ++E + PEI I F + ++ ++ E+ +
Sbjct: 462 LIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK------IILQIQCRISDEERRG 515
Query: 164 KFVVKQVARYKRLRNVTFT------NSIPKTTSGKILRRE 197
+ + AR + VT +SIP+T+SGK R E
Sbjct: 516 QLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAE 555
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 10/129 (7%)
Query: 80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDP 139
G+ TGD D+ G ++I+ R+ +++ +G +++ AE+E ++ P + + V+ F D
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 140 EAGEVPIAYVVRSPNSSLTK------EDVQKFVV----KQVARYKRLRNVTFTNSIPKTT 189
G+ A+VV SS + +D++K +V K + + + + + +PKT
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622
Query: 190 SGKILRREL 198
SGKI+RR L
Sbjct: 623 SGKIMRRIL 631
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 47 PPNQVGELWVRGPILMPGYFNNEQATK-LIIDK-----EGWLHTGDLGYFDEHGQLFIVD 100
P VGEL + G + GY N TK I+ E TGDL + G +
Sbjct: 799 PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858
Query: 101 RIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPI-AYVVRSPNSSLTK 159
RI + +K G ++ E+E L +P + DAVV+ E+G+ I AY+V + L+
Sbjct: 859 RIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA-DRHESGDASINAYLVN--RTQLSA 915
Query: 160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
EDV+ + KQ+ Y + TF + +P TT+GK+ +R L
Sbjct: 916 EDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 47 PPNQVGELWVRGPILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
P + GE+ + GP + GY + + T+ +ID E TGD GY E+G LF R+
Sbjct: 341 PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLD 399
Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE--- 160
IK +G+++ E+E L + + AV++P E + +A VV + S KE
Sbjct: 400 FQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH-SFEKEFKL 458
Query: 161 --DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204
++K + +++ Y R + +SIP T +GK+ R++L++++ +
Sbjct: 459 TSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 47 PPNQVGELWVRGPILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
P + GE+ + GP + GY + + T+ +ID E TGD GY E+G LF R+
Sbjct: 341 PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLD 399
Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE--- 160
IK +G+++ E+E L + + AV++P E + +A VV + S KE
Sbjct: 400 FQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH-SFEKEFKL 458
Query: 161 --DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204
++K + +++ Y R + +SIP T +GK+ R++L++++ +
Sbjct: 459 TSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 10/206 (4%)
Query: 2 YGMTE-TCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTL-KPLPPNQVGELWVRGP 59
YG TE T V +VE + S S A + I +D +PLP + GE+ + GP
Sbjct: 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP 352
Query: 60 ILMPGYFNNEQAT-KLIIDKEG-WLH-TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
+ GY + T K EG W + TGD G+ + GQ+F R+ IK +G+++
Sbjct: 353 SVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQD-GQIFCQGRLDFQIKLHGYRMELE 411
Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVA----R 172
E+E + + AVVIP+ E IA +V + + + + K++A
Sbjct: 412 EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPA 471
Query: 173 YKRLRNVTFTNSIPKTTSGKILRREL 198
Y R + + I T +GKI R+ +
Sbjct: 472 YMIPRKFIYQDHIQMTANGKIDRKRI 497
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
GY +TE+CG T+ ++ +GSAGR + + D + + + GE+ ++ I
Sbjct: 300 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDI 357
Query: 61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVD 100
L+ Y+N +AT+ D GW TGD+G D+ G L+I D
Sbjct: 358 LLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKD 396
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 22 NSGSAGRLVAG----VEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKL--- 74
NS + +LV+ E +I+ DTL P +QVGE+WV+ + GY+N + T+
Sbjct: 366 NSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFA 425
Query: 75 --IIDKEG---WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHP 126
I D E +L TGDLG+ E +L++ RIK+LI G P ++E L P
Sbjct: 426 GKIKDDERSAIYLRTGDLGFLHE-NELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 50.4 bits (119), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 20/217 (9%)
Query: 1 GYGMTE----TCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWV 56
GYG TE TC V ++ L ++ G+ +AG ++ + P++ GE+
Sbjct: 308 GYGPTENTTFTCCHVVTDDDL--EEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365
Query: 57 RGPILMPGYFNNEQATK---LIIDKEGWL----HTGDLGYFDEHGQLFIVDRIKELIKCN 109
G L GY N+ T+ + + G L TGD +DE G+L + R +K N
Sbjct: 366 FGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLN 425
Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQ 169
G+++ LE P ILD ++ ++ A+ ++ S + +++Q
Sbjct: 426 GYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASP-------QALLRQ 478
Query: 170 VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI 206
+ ++R ++P T GK+ R L+ +L +
Sbjct: 479 LPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPL 515
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 11/173 (6%)
Query: 44 KPLPPNQVGELWVRGPILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVD 100
K L + GE+ V GP + GY NN + T + HTGD+G E L
Sbjct: 341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGG 400
Query: 101 RIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAG-EVPIAYVV-------RS 152
R+ IK G+++ ++ L P + AV +P + E + +AY+V R
Sbjct: 401 RLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERF 460
Query: 153 PNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
+ ++ V + Y + +S+P T +GKI + LI ++ ++
Sbjct: 461 DRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 35 AQIVCVD-TLKPLPPNQVGELWVRGPILMPGYFNN-EQATKLIIDK-----EGWLHTGDL 87
QI VD L+ + GEL + G L GY+ E ++ +D E TGD
Sbjct: 355 TQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414
Query: 88 GYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIA 147
+ G + + RI +K G +V E+E +L+ H I + V D + A
Sbjct: 415 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCA 474
Query: 148 YVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
Y V + L E +++F +++ Y + +P T++GKI R++L
Sbjct: 475 YFVSEKHIPL--EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 36 QIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQAT------KLIIDKEG-----WLHT 84
+IV DT P VGE+WV G + GY+ + K++ G WL T
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRT 464
Query: 85 GDLGYFDEHGQLFIVDR 101
GD G+ + G++FI+ R
Sbjct: 465 GDSGFVTD-GKMFIIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 36 QIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQAT------KLIIDKEG-----WLHT 84
+IV DT P VGE+WV G + GY+ + K++ G WL T
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRT 464
Query: 85 GDLGYFDEHGQLFIVDR 101
GD G+ + G+ FI+ R
Sbjct: 465 GDSGFVTD-GKXFIIGR 480
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 20 VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQAT-----KL 74
Q++ GR + ++V D + + P + GELW+ G L GY + T ++
Sbjct: 347 AQDASIIGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEV 405
Query: 75 IIDKEG----WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILD 130
+K G + TGDL G+ R IK G+++ +++E + H +++D
Sbjct: 406 TDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVD 465
Query: 131 AVVIPFP-DPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTT 189
AVV P + AYV R S+ T +++ + + Y +P+T
Sbjct: 466 AVVTVREFKPGDLRLVCAYVARE-GSATTARELRNHIKTLLPAYMHPARYLPLPGLPRTV 524
Query: 190 SGKILR 195
+GK+ R
Sbjct: 525 NGKVDR 530
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 51 VGELWVRGPILMPGYFNNEQATKLI-IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
GEL + G ++ GY N A I+ TGD+ D + + R E +K
Sbjct: 374 AGELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVR 433
Query: 110 GFQVAPAELEGVLVS-HPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE 160
G ++ E+ V+ S P +D V + P + + V S +++ E
Sbjct: 434 GQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGE 485
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 1 GYGMTETCGVVTVENPLLGVQNSGSA---GRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
GYG E+ G T + ++ SG+A G +AG A ++ D LKP +GEL+V
Sbjct: 358 GYGPAESMGFTT-HHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVA 415
Query: 58 GPILMPGYFNNEQ--ATKLIID------KEGWLHTGDLGYFDEHGQLFIVDR 101
G L GY + A + + D E TGDL G L V R
Sbjct: 416 GAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 520
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 70 QATKLIIDKEGWL---HTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHP 126
+A +LI D EG + G +GYF HG L I+ + NG A VL S P
Sbjct: 433 RAMQLIADAEGQRRGSYGGAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVP 492
Query: 127 E 127
+
Sbjct: 493 Q 493
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 31 AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYF 90
AG Q V + +P GEL+ R N E+ TKL ++ + +L GDL
Sbjct: 31 AGKGTQAVKLAEKLGIPQISTGELFRR---------NIEEGTKLGVEAKRYLDAGDLVPS 81
Query: 91 DEHGQLFIVDRIKELIKCNGF 111
D +L + DR+ NGF
Sbjct: 82 DLTNEL-VDDRLNNPDAANGF 101
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 31 AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYF 90
AG Q V + +P GEL+ R N E+ TKL ++ + +L GDL
Sbjct: 11 AGKGTQAVKLAEKLGIPQISTGELFRR---------NIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 91 DEHGQLFIVDRIKELIKCNGF 111
D +L + DR+ NGF
Sbjct: 62 DLTNEL-VDDRLNNPDAANGF 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,473,050
Number of Sequences: 62578
Number of extensions: 276085
Number of successful extensions: 766
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 65
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)