Query 043808
Match_columns 206
No_of_seqs 119 out of 1177
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 14:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 1.3E-46 4.4E-51 314.1 21.2 203 1-205 299-501 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 3.7E-46 1.3E-50 313.5 20.0 204 1-204 329-535 (536)
3 2d1s_A Luciferase, luciferin 4 100.0 3.2E-45 1.1E-49 308.5 19.5 204 1-206 341-545 (548)
4 3r44_A Fatty acyl COA syntheta 100.0 8.6E-45 2.9E-49 304.0 18.5 202 1-206 314-515 (517)
5 3g7s_A Long-chain-fatty-acid-- 100.0 4.9E-45 1.7E-49 307.4 14.5 203 1-204 334-542 (549)
6 3etc_A AMP-binding protein; ad 100.0 3E-44 1E-48 304.3 19.3 201 1-205 372-580 (580)
7 3nyq_A Malonyl-COA ligase; A/B 100.0 6E-44 2E-48 298.1 18.9 197 1-200 303-504 (505)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.1E-44 1.4E-48 301.2 17.3 203 1-206 329-533 (539)
9 1pg4_A Acetyl-COA synthetase; 100.0 2.1E-43 7.1E-48 302.8 20.1 204 1-205 412-622 (652)
10 3e7w_A D-alanine--poly(phospho 100.0 7.6E-43 2.6E-47 291.8 21.8 202 1-204 292-503 (511)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.4E-43 1.5E-47 292.8 19.9 197 1-204 303-504 (504)
12 3rix_A Luciferase, luciferin 4 100.0 1E-44 3.5E-49 305.6 8.9 203 1-205 339-542 (550)
13 1amu_A GRSA, gramicidin synthe 100.0 2.7E-43 9.2E-48 297.6 17.3 198 1-201 322-526 (563)
14 3l8c_A D-alanine--poly(phospho 100.0 1.6E-43 5.6E-48 296.4 14.9 204 1-205 296-513 (521)
15 3c5e_A Acyl-coenzyme A synthet 100.0 6.1E-43 2.1E-47 295.8 17.7 200 1-204 353-562 (570)
16 3fce_A D-alanine--poly(phospho 100.0 9.5E-43 3.3E-47 291.2 17.7 202 1-204 293-504 (512)
17 3ivr_A Putative long-chain-fat 100.0 1.5E-44 5.1E-49 301.9 6.6 199 1-204 301-501 (509)
18 3rg2_A Enterobactin synthase c 100.0 1.6E-42 5.5E-47 295.7 17.1 200 1-204 333-534 (617)
19 1v25_A Long-chain-fatty-acid-C 100.0 8.2E-44 2.8E-48 299.5 8.4 204 1-206 323-538 (541)
20 3tsy_A Fusion protein 4-coumar 100.0 1.6E-43 5.3E-48 315.4 10.1 205 1-205 376-583 (979)
21 1ry2_A Acetyl-coenzyme A synth 100.0 2.7E-42 9.4E-47 296.3 17.1 204 1-204 418-637 (663)
22 3o83_A Peptide arylation enzym 100.0 1E-43 3.6E-48 299.0 6.6 201 1-204 338-540 (544)
23 4gr5_A Non-ribosomal peptide s 100.0 1.4E-43 4.8E-48 299.7 7.4 201 1-202 358-569 (570)
24 2v7b_A Benzoate-coenzyme A lig 100.0 9.9E-42 3.4E-46 286.1 17.6 195 1-200 331-528 (529)
25 3ipl_A 2-succinylbenzoate--COA 100.0 8.8E-42 3E-46 284.6 14.8 194 1-204 304-497 (501)
26 2vsq_A Surfactin synthetase su 100.0 2.5E-41 8.4E-46 308.2 18.4 197 1-200 752-956 (1304)
27 4dg8_A PA1221; ANL superfamily 100.0 2.9E-41 9.8E-46 287.9 17.2 196 1-204 308-513 (620)
28 3ite_A SIDN siderophore synthe 100.0 9.6E-42 3.3E-46 288.0 8.6 203 1-204 325-543 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 1.9E-39 6.5E-44 274.4 14.8 200 1-205 336-564 (576)
30 3kxw_A Saframycin MX1 syntheta 100.0 2.6E-39 8.8E-44 274.4 9.7 200 1-204 326-567 (590)
31 4gs5_A Acyl-COA synthetase (AM 100.0 5.3E-35 1.8E-39 234.4 12.7 174 1-205 178-355 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 2E-32 6.9E-37 224.6 14.0 177 1-196 237-429 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 5.8E-32 2E-36 222.3 12.3 181 1-198 243-438 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 1.6E-31 5.4E-36 219.3 11.9 179 1-197 241-432 (437)
35 3t5a_A Long-chain-fatty-acid-- 99.8 1.5E-21 5.1E-26 161.5 6.5 99 1-101 348-480 (480)
36 3gxs_A Phenylacetate-coenzyme 99.7 5.6E-17 1.9E-21 108.1 8.9 95 100-196 1-102 (109)
37 3lax_A Phenylacetate-coenzyme 99.7 1.2E-16 4.2E-21 106.4 9.8 95 100-195 1-101 (109)
38 3hgu_A EHPF; phenazine, antibi 99.1 8.5E-11 2.9E-15 94.0 5.9 90 1-111 264-368 (369)
39 4b2g_A GH3-1 auxin conjugating 98.6 3.5E-07 1.2E-11 77.0 10.7 103 1-124 335-458 (609)
40 4epl_A Jasmonic acid-amido syn 98.5 2.9E-06 9.8E-11 71.2 13.3 130 1-152 335-488 (581)
41 4eql_A 4-substituted benzoates 98.5 5.6E-07 1.9E-11 75.6 8.9 105 1-126 330-448 (581)
42 2cvi_A 75AA long hypothetical 41.2 52 0.0018 19.2 6.3 52 115-176 15-66 (83)
43 4ap8_A Molybdopterin synthase 34.9 97 0.0033 20.5 5.3 72 100-172 4-76 (135)
44 2zbc_A 83AA long hypothetical 31.2 78 0.0027 18.2 6.2 50 115-174 15-64 (83)
45 3lw6_A FI08434P, beta-4-galact 27.4 1.1E+02 0.0036 23.3 4.9 80 118-201 26-105 (287)
46 2djw_A Probable transcriptiona 27.3 1E+02 0.0035 18.3 4.2 48 115-172 15-62 (92)
47 1vc3_B L-aspartate-alpha-decar 22.6 94 0.0032 19.3 3.2 32 29-60 14-51 (96)
48 3oug_A Aspartate 1-decarboxyla 20.2 1.2E+02 0.0042 19.4 3.4 31 29-60 41-78 (114)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.3e-46 Score=314.11 Aligned_cols=203 Identities=32% Similarity=0.514 Sum_probs=189.4
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
.||+||++..++... .....++++|+|+|+++++|+|+++++++|.|+.|||+|+||+++.||+++++.+...|..++
T Consensus 299 ~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g 376 (503)
T 4fuq_A 299 RYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDG 376 (503)
T ss_dssp CCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTS
T ss_pred eEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCC
Confidence 599999987654322 234567899999999999999989999999999999999999999999999999999887899
Q ss_pred eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808 81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE 160 (206)
Q Consensus 81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (206)
||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+....+.+
T Consensus 377 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 456 (503)
T 4fuq_A 377 FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEA 456 (503)
T ss_dssp CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999888888899
Q ss_pred HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808 161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205 (206)
Q Consensus 161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~ 205 (206)
++++++++.|+.|++|..++++++||+|++||++|++|++++++.
T Consensus 457 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 457 QVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp HHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred HHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998764
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.7e-46 Score=313.46 Aligned_cols=204 Identities=50% Similarity=0.822 Sum_probs=186.9
Q ss_pred CcccccCccceeccC---CccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808 1 GYGMTETCGVVTVEN---PLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID 77 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~ 77 (206)
+||+||++.+++... .......++++|+|+++++++|+|+++++++|.|+.|||+|+|++++.||+++++.+...|+
T Consensus 329 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~ 408 (536)
T 3ni2_A 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408 (536)
T ss_dssp EEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred cccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence 499999998765432 12224467889999999999999988999999999999999999999999999999998898
Q ss_pred CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808 78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL 157 (206)
Q Consensus 78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 157 (206)
.++||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+....
T Consensus 409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~ 488 (536)
T 3ni2_A 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQA 488 (536)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred CCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999988888999999999888888
Q ss_pred CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
+.++++++++++|+.|+.|..++++++||+|++||++|++|+++++.
T Consensus 489 ~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 489 TEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp CHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999988764
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.2e-45 Score=308.49 Aligned_cols=204 Identities=48% Similarity=0.829 Sum_probs=189.1
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
.||+||++.+++.... .....+++|+|+|+++++|+|++++++++.|+.|||+|+|++++.||+++++.+...|+.++
T Consensus 341 ~YG~TE~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g 418 (548)
T 2d1s_A 341 GYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEG 418 (548)
T ss_dssp EEECGGGSSEEEECCT--TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS
T ss_pred ccccccccceeeecCc--ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCc
Confidence 4999999987765322 23567899999999999999988999999999999999999999999999999988887899
Q ss_pred eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808 81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE 160 (206)
Q Consensus 81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (206)
||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.+....+.+
T Consensus 419 ~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~ 498 (548)
T 2d1s_A 419 WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEK 498 (548)
T ss_dssp CEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred EEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999998877677889
Q ss_pred HHHHHHHHhccccCcee-EEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808 161 DVQKFVVKQVARYKRLR-NVTFTNSIPKTTSGKILRRELIAKLRSKI 206 (206)
Q Consensus 161 ~l~~~~~~~l~~~~~p~-~~~~v~~~P~t~~GKv~r~~l~~~~~~~~ 206 (206)
+++++++++|+.++.|. .++++++||+|++||++|++|++++++.|
T Consensus 499 ~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 499 EVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp HHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred HHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 99999999999999999 99999999999999999999999998765
No 4
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=8.6e-45 Score=303.98 Aligned_cols=202 Identities=32% Similarity=0.572 Sum_probs=185.6
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
+||+||++..++...........+++|+|++++.++++| ++++.++.| .|||+|+||+++.||+++++.++..| .++
T Consensus 314 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g 390 (517)
T 3r44_A 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNG 390 (517)
T ss_dssp EEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETT
T ss_pred eecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCC
Confidence 499999998877665444456678999999999999999 788999999 89999999999999999999998888 789
Q ss_pred eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808 81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE 160 (206)
Q Consensus 81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (206)
||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++ ..+....+.+
T Consensus 391 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~ 469 (517)
T 3r44_A 391 WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQ 469 (517)
T ss_dssp EEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHH
T ss_pred CEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999888888888888 5556677889
Q ss_pred HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808 161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI 206 (206)
Q Consensus 161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~ 206 (206)
++++++++.|+.|++|..++++++||+|++||++|++|++++++.+
T Consensus 470 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 470 QIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp HHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998864
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.9e-45 Score=307.42 Aligned_cols=203 Identities=38% Similarity=0.724 Sum_probs=146.9
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc--cC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII--DK 78 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~--~~ 78 (206)
.||+||++.+++..... ......++|+|+++++++|+|+++++++|.|+.|||+|+||+++.||+++++.++..| +.
T Consensus 334 ~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~ 412 (549)
T 3g7s_A 334 IWGMTEACPMVTTNPPL-RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDE 412 (549)
T ss_dssp EEECGGGSSEEEECCGG-GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECT
T ss_pred eEeccccchhhhcCCcc-ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccC
Confidence 39999999887665432 2356788999999999999998999999999999999999999999999999998776 24
Q ss_pred CC--eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC--
Q 043808 79 EG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN-- 154 (206)
Q Consensus 79 ~~--~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-- 154 (206)
++ ||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++++.+.
T Consensus 413 ~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 492 (549)
T 3g7s_A 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR 492 (549)
T ss_dssp TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT
T ss_pred CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc
Confidence 55 99999999999999999999999999999999999999999999999999999999998888999999998776
Q ss_pred CCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 155 SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 155 ~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
...+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 493 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 493 GKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp TSCCHHHHHHHHHTTCC-----CCCCEEEECC------------------
T ss_pred CcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhc
Confidence 56778999999999999999999999999999999999999999998765
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=3e-44 Score=304.34 Aligned_cols=201 Identities=31% Similarity=0.491 Sum_probs=164.3
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEc-----CCCCcccCCChhhcccc
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG-----PILMPGYFNNEQATKLI 75 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~-----~~~~~~y~~~~~~~~~~ 75 (206)
+||+||++.+++.... ....++++|+|+|+++++|+| ++++++|.|+.|||+|++ +.++.||+++++.+++.
T Consensus 372 ~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~ 448 (580)
T 3etc_A 372 GFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEET 448 (580)
T ss_dssp EECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHH
T ss_pred ccccccccceeecCCC--CCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhh
Confidence 4999999877665433 245678999999999999999 679999999999999997 78999999999999888
Q ss_pred ccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC
Q 043808 76 IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS 155 (206)
Q Consensus 76 ~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 155 (206)
| .++||+|||++++++||+++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.++++|++.+..
T Consensus 449 f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~ 527 (580)
T 3etc_A 449 W-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY 527 (580)
T ss_dssp E-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred c-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC
Confidence 8 589999999999999999999999999999999999999999999999999999999999998999999999988765
Q ss_pred CCC---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808 156 SLT---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205 (206)
Q Consensus 156 ~~~---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~ 205 (206)
... .++|++++++.|+.|+.|+.++++++||+|++||++|++|++++.++
T Consensus 528 ~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 528 TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp CCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred CCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence 544 36899999999999999999999999999999999999999998764
No 7
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6e-44 Score=298.12 Aligned_cols=197 Identities=34% Similarity=0.584 Sum_probs=163.5
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCC---CCceEEEEEcCCCCcccCCChhhcccccc
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPP---NQVGELWVRGPILMPGYFNNEQATKLIID 77 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~---g~~Gel~i~~~~~~~~y~~~~~~~~~~~~ 77 (206)
.||+||++.+++.... ......++|+|+++++++|+| +++++++. |+.|||+|+|++++.||+++++.++..|.
T Consensus 303 ~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 379 (505)
T 3nyq_A 303 RYGMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT 379 (505)
T ss_dssp EEEETTTEEEEECCTT--SCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC
T ss_pred ccchhhcccccccCCC--CCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc
Confidence 4999999877665432 345568899999999999999 77888876 89999999999999999999999999898
Q ss_pred CCCeEecCceEEEecCCcEEEeccc-cceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC-CC
Q 043808 78 KEGWLHTGDLGYFDEHGQLFIVDRI-KELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP-NS 155 (206)
Q Consensus 78 ~~~~~~TGDl~~~~~~g~l~~~GR~-dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~ 155 (206)
.++||+|||++++++||.++|+||. ||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+ ..
T Consensus 380 ~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~ 459 (505)
T 3nyq_A 380 EDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA 459 (505)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS
T ss_pred CCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC
Confidence 8999999999999999999999998 689999999999999999999999999999999999888899999999875 34
Q ss_pred CCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808 156 SLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200 (206)
Q Consensus 156 ~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~ 200 (206)
..+.++|+++++++|+.|++|+.++++++||+|++||++|++|++
T Consensus 460 ~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 460 PPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp CCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 567889999999999999999999999999999999999999986
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.1e-44 Score=301.20 Aligned_cols=203 Identities=25% Similarity=0.442 Sum_probs=180.1
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCC-ceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAG-VEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE 79 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~ 79 (206)
+||+||++..++... ........++|+|+++ .+++|+| ++++++|.|+.|||+|+||+++.||+++++.++..|..+
T Consensus 329 ~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 406 (539)
T 1mdb_A 329 VFGMAEGLVNYTRLD-DPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTED 406 (539)
T ss_dssp EEECTTSCEEECCTT-SCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTT
T ss_pred EEcCCCCcccccCCC-CcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCC
Confidence 499999764433221 1112334689999976 4799999 789999999999999999999999999999998888789
Q ss_pred CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808 80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 159 (206)
Q Consensus 80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (206)
+||+|||++++++||+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++... ...+.
T Consensus 407 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~ 485 (539)
T 1mdb_A 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKA 485 (539)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCH
T ss_pred CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCH
Confidence 99999999999999999999999999999999999999999999999999999999998888889999998763 45678
Q ss_pred HHHHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808 160 EDVQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI 206 (206)
Q Consensus 160 ~~l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~ 206 (206)
++++++++++ |+.|++|..++++++||+|++||++|++|++++.++|
T Consensus 486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 8999999998 9999999999999999999999999999999988754
No 9
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.1e-43 Score=302.83 Aligned_cols=204 Identities=27% Similarity=0.385 Sum_probs=182.6
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEc--CCCCcccCCChhhccccc-c
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG--PILMPGYFNNEQATKLII-D 77 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~--~~~~~~y~~~~~~~~~~~-~ 77 (206)
.||+||++.+++...........+++|+|+++++++|+| ++++++|.|+.|||+|++ |+++.||+++++.+...+ .
T Consensus 412 ~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~ 490 (652)
T 1pg4_A 412 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS 490 (652)
T ss_dssp EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS
T ss_pred cccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhh
Confidence 499999998776554322345678999999999999999 789999999999999999 689999999998775544 2
Q ss_pred -CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808 78 -KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS 156 (206)
Q Consensus 78 -~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 156 (206)
.++||+|||++++++||.++|+||.||+||++|++|++.+||+.|.++|.|.+++|++.+++..++.++++|++.++..
T Consensus 491 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~ 570 (652)
T 1pg4_A 491 TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE 570 (652)
T ss_dssp SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC
Confidence 3789999999999999999999999999999999999999999999999999999999998888899999999887655
Q ss_pred CC---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808 157 LT---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205 (206)
Q Consensus 157 ~~---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~ 205 (206)
.+ .++|++++++.|+.++.|..++++++||+|++||++|++|++++..+
T Consensus 571 ~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 571 PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 44 47899999999999999999999999999999999999999998764
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=7.6e-43 Score=291.77 Aligned_cols=202 Identities=25% Similarity=0.342 Sum_probs=178.6
Q ss_pred CcccccCccceeccCCcc---CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808 1 GYGMTETCGVVTVENPLL---GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII- 76 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~- 76 (206)
+||+||++.+++...... ......++|+|+|+++++|+| ++++++|.|+.|||+|+||+++.||+++++.++..|
T Consensus 292 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 370 (511)
T 3e7w_A 292 TYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFF 370 (511)
T ss_dssp CCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEE
T ss_pred CcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhc
Confidence 599999998776442211 233456799999999999999 779999999999999999999999999999887766
Q ss_pred --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808 77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN 154 (206)
Q Consensus 77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 154 (206)
++..||+|||++++ +||.++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.++++++..+.
T Consensus 371 ~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 449 (511)
T 3e7w_A 371 SHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEH 449 (511)
T ss_dssp ESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCC
T ss_pred CCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccc
Confidence 23338999999999 699999999999999999999999999999999999999999999888888899999998766
Q ss_pred CCCC----HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 155 SSLT----KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 155 ~~~~----~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
.... .++++++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 450 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 450 EFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp CCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 5444 3678899999999999999999999999999999999999999875
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4.4e-43 Score=292.75 Aligned_cols=197 Identities=27% Similarity=0.418 Sum_probs=179.0
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCC---CCCCCCCceEEEEE-cCCCCcccCCChhhccccc
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTL---KPLPPNQVGELWVR-GPILMPGYFNNEQATKLII 76 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~---~~~~~g~~Gel~i~-~~~~~~~y~~~~~~~~~~~ 76 (206)
.||+||++ ++.... ....+++|+|+++++++++| +.+ +++|.|+.|||+++ ++.++.||+++++.+...|
T Consensus 303 ~YG~TE~~-~~~~~~----~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f 376 (504)
T 1t5h_X 303 IYGTTEAM-NSLYMR----QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL 376 (504)
T ss_dssp EEEETTTE-EEEEEE----SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE
T ss_pred eecccccc-cccccc----CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh
Confidence 49999993 332221 34567899999999999999 445 89999999999999 8999999999999998888
Q ss_pred cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808 77 DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS 156 (206)
Q Consensus 77 ~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 156 (206)
.++||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.+...
T Consensus 377 -~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 455 (504)
T 1t5h_X 377 -QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET 455 (504)
T ss_dssp -ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCC
T ss_pred -cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcC
Confidence 6899999999999999999999999999999999999999999999999999999999999888899999999887767
Q ss_pred CCHHHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 157 LTKEDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 157 ~~~~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
.+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++++
T Consensus 456 ~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~s 504 (504)
T 1t5h_X 456 LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504 (504)
T ss_dssp CCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC-
T ss_pred cCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhcC
Confidence 788999999998 899999999999999999999999999999998753
No 12
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1e-44 Score=305.55 Aligned_cols=203 Identities=46% Similarity=0.796 Sum_probs=89.0
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
+||+||++++++.... .....+++|+|+|+++++|+|++++++++.|+.|||+|+||+++.||+++++.+...|+.++
T Consensus 339 ~YG~TE~~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g 416 (550)
T 3rix_A 339 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG 416 (550)
T ss_dssp EEECGGGSSEEEECCT--TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS
T ss_pred ccCcCccccceecCCC--CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCC
Confidence 4999999988766543 24567899999999999999988999999999999999999999999999999998888899
Q ss_pred eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808 81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE 160 (206)
Q Consensus 81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (206)
||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|+..+....+.+
T Consensus 417 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 496 (550)
T 3rix_A 417 WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK 496 (550)
T ss_dssp CEEEEEEEEECTTCCEEEC-------------------------------------------------------------
T ss_pred CeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999999998877777788
Q ss_pred HHHHHHHHhccccCcee-EEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808 161 DVQKFVVKQVARYKRLR-NVTFTNSIPKTTSGKILRRELIAKLRSK 205 (206)
Q Consensus 161 ~l~~~~~~~l~~~~~p~-~~~~v~~~P~t~~GKv~r~~l~~~~~~~ 205 (206)
++++++.++++.++.|. .++++++||+|++||++|++|++++.+.
T Consensus 497 ~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 497 EIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhh
Confidence 99999999999886665 6899999999999999999999998653
No 13
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.7e-43 Score=297.63 Aligned_cols=198 Identities=25% Similarity=0.321 Sum_probs=177.0
Q ss_pred CcccccCccceeccCCcc-CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc--
Q 043808 1 GYGMTETCGVVTVENPLL-GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID-- 77 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~-- 77 (206)
+||+||++.+++...... ......++|+|+++++++|+| ++++++|.|+.|||+|+||+++.||+++++.++..|.
T Consensus 322 ~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~ 400 (563)
T 1amu_A 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDN 400 (563)
T ss_dssp EECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEEC
T ss_pred EECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccC
Confidence 499999988776543221 223567899999999999999 7899999999999999999999999999998876662
Q ss_pred ----CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808 78 ----KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP 153 (206)
Q Consensus 78 ----~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 153 (206)
+++||+|||++++++||+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.++...++.++++++...
T Consensus 401 ~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~ 480 (563)
T 1amu_A 401 PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK 480 (563)
T ss_dssp SSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS
T ss_pred CCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC
Confidence 3469999999999999999999999999999999999999999999999999999999998888888999998753
Q ss_pred CCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808 154 NSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK 201 (206)
Q Consensus 154 ~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~ 201 (206)
..+.++|++++++.|+.|++|..++++++||+|++||++|++|++.
T Consensus 481 --~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 481 --HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp --CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred --CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCc
Confidence 4567899999999999999999999999999999999999998764
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.6e-43 Score=296.37 Aligned_cols=204 Identities=23% Similarity=0.330 Sum_probs=170.6
Q ss_pred CcccccCccceeccCCcc---CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808 1 GYGMTETCGVVTVENPLL---GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII- 76 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~- 76 (206)
+||+||++.+++...... ......++|+|+|++.++|+| +++++++.|+.|||+|+||+++.||+++++.++..|
T Consensus 296 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 374 (521)
T 3l8c_A 296 AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFF 374 (521)
T ss_dssp EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEE
T ss_pred CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCc
Confidence 499999998776542211 123456899999999999999 789999999999999999999999999999988766
Q ss_pred --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCC-CCCceeEEEEEeCC
Q 043808 77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDP-EAGEVPIAYVVRSP 153 (206)
Q Consensus 77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~-~~~~~~~~~v~~~~ 153 (206)
++++||+|||+++++++|.+++.||.||+||++|++|+|.+||+.|.++|.|.++++++..+. ..++.++++++..+
T Consensus 375 ~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~ 454 (521)
T 3l8c_A 375 TFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKD 454 (521)
T ss_dssp EETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECT
T ss_pred CCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecC
Confidence 567899999999999999999999999999999999999999999999999999999988654 34578899998876
Q ss_pred CCCCC-------HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808 154 NSSLT-------KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205 (206)
Q Consensus 154 ~~~~~-------~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~ 205 (206)
..... .++++++++++|+.++.|..++++++||+|++||++|++|+++++++
T Consensus 455 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 455 GVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp TSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred ccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence 54321 46889999999999999999999999999999999999999998653
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=6.1e-43 Score=295.82 Aligned_cols=200 Identities=32% Similarity=0.490 Sum_probs=179.7
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEE-----cCCCCcccCCChhhcccc
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR-----GPILMPGYFNNEQATKLI 75 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~-----~~~~~~~y~~~~~~~~~~ 75 (206)
+||+||++.+++.... .....+++|+|+++++++|+| ++++++|.|+.|||+|+ |++++.||+++++.+...
T Consensus 353 ~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~ 429 (570)
T 3c5e_A 353 SYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAAN 429 (570)
T ss_dssp EEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHT
T ss_pred ccchhhcccceecCcc--cccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhh
Confidence 4999999977654432 234678999999999999999 77999999999999999 999999999999999888
Q ss_pred ccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC
Q 043808 76 IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS 155 (206)
Q Consensus 76 ~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 155 (206)
| .++||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.+..
T Consensus 430 f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 508 (570)
T 3c5e_A 430 I-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQF 508 (570)
T ss_dssp E-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGG
T ss_pred h-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcc
Confidence 7 579999999999999999999999999999999999999999999999999999999999888888999999886543
Q ss_pred C--C---CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 156 S--L---TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 156 ~--~---~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
. . ..++|++++++.|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 509 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 509 LSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred cCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 1 1 24689999999999999999999999999999999999999998754
No 16
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=9.5e-43 Score=291.21 Aligned_cols=202 Identities=27% Similarity=0.367 Sum_probs=179.7
Q ss_pred CcccccCccceeccCCcc---CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808 1 GYGMTETCGVVTVENPLL---GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII- 76 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~- 76 (206)
.||+||++.+++...... ......++|+|++++.++++| ++++++|.|+.|||+|+||+++.||+++++.++..|
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 371 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFT 371 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEE
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccc
Confidence 499999998776443211 123567899999999999999 889999999999999999999999999999887766
Q ss_pred --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808 77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN 154 (206)
Q Consensus 77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 154 (206)
++++||+|||++++ +||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.++...++.++++++..+.
T Consensus 372 ~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 450 (512)
T 3fce_A 372 MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH 450 (512)
T ss_dssp EETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred cCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence 56789999999999 899999999999999999999999999999999999999999999888888889999988765
Q ss_pred CCCCH----HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 155 SSLTK----EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 155 ~~~~~----~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
..... +++++++++.|+.|+.|..++++++||+|++||++|++|++.+.+
T Consensus 451 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~ 504 (512)
T 3fce_A 451 SFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504 (512)
T ss_dssp CCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC
T ss_pred cccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhh
Confidence 44432 578899999999999999999999999999999999999999875
No 17
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.5e-44 Score=301.93 Aligned_cols=199 Identities=41% Similarity=0.667 Sum_probs=86.9
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
.||+||++.+++..... ....++|+|+++++++|+| ++++++|.|+.|||+|+|++++.||+++++.+...| .++
T Consensus 301 ~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g 375 (509)
T 3ivr_A 301 TFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNG 375 (509)
T ss_dssp EEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGG
T ss_pred ccCccccccccccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcC
Confidence 49999999887655332 2345599999999999999 679999999999999999999999999999998888 589
Q ss_pred eEecCceEEEecCCcEEEeccc--cceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 043808 81 WLHTGDLGYFDEHGQLFIVDRI--KELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT 158 (206)
Q Consensus 81 ~~~TGDl~~~~~~g~l~~~GR~--dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (206)
||+|||+++++++|+++|+||. +|+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+....+
T Consensus 376 ~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 455 (509)
T 3ivr_A 376 WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIA 455 (509)
T ss_dssp SEEEEEEEEECTTSCEEEEEEC----------------------------------------------------------
T ss_pred CcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCC
Confidence 9999999999999999999999 89999999999999999999999999999999999988889999999988777777
Q ss_pred HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 159 KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 159 ~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
.+++++++++.|+.|++|..++++++||+|++||++|++|++++++
T Consensus 456 ~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~ 501 (509)
T 3ivr_A 456 ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQ 501 (509)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhh
Confidence 8899999999999999999999999999999999999999998875
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.6e-42 Score=295.73 Aligned_cols=200 Identities=28% Similarity=0.430 Sum_probs=180.0
Q ss_pred CcccccCccceeccCCccCCCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE 79 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~ 79 (206)
.||+||++..++.... .......++|+|+ +++.++|+| ++++++|.|+.|||+|+|++++.||+++++.++..|..+
T Consensus 333 ~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~ 410 (617)
T 3rg2_A 333 VFGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDAN 410 (617)
T ss_dssp EEEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTT
T ss_pred EeccCcceeecccCCC-cccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCC
Confidence 4999999866543322 1223345789998 788999999 889999999999999999999999999999999999889
Q ss_pred CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808 80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 159 (206)
Q Consensus 80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (206)
+||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+ ..+.
T Consensus 411 ~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~ 488 (617)
T 3rg2_A 411 GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRA 488 (617)
T ss_dssp SCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCH
T ss_pred CceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCH
Confidence 99999999999999999999999999999999999999999999999999999999988888889999998765 5667
Q ss_pred HHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 160 EDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 160 ~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
.++++++.+ .|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 489 ~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 489 VQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp HHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 899999998 699999999999999999999999999999998764
No 19
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=8.2e-44 Score=299.53 Aligned_cols=204 Identities=31% Similarity=0.571 Sum_probs=143.8
Q ss_pred CcccccCccceeccCCccC---------CCCCCcceeecCCceEEEEeCCCCCCCCC--CCceEEEEEcCCCCcccCCCh
Q 043808 1 GYGMTETCGVVTVENPLLG---------VQNSGSAGRLVAGVEAQIVCVDTLKPLPP--NQVGELWVRGPILMPGYFNNE 69 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~--g~~Gel~i~~~~~~~~y~~~~ 69 (206)
+||+||++.+++....... .....++|+|+|+++++|+| ++++++|. ++.|||+|+||+++.||++++
T Consensus 323 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p 401 (541)
T 1v25_A 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNE 401 (541)
T ss_dssp EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCH
T ss_pred cccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCCh
Confidence 4999999987765432110 12357899999999999999 77888884 368999999999999999999
Q ss_pred hhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEE
Q 043808 70 QATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV 149 (206)
Q Consensus 70 ~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v 149 (206)
+.++..|..++||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++
T Consensus 402 ~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~v 481 (541)
T 1v25_A 402 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVV 481 (541)
T ss_dssp HHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC
T ss_pred hhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEE
Confidence 99998887789999999999999999999999999999999999999999999999999999999999988888899998
Q ss_pred EeCCCCCCCHHHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808 150 VRSPNSSLTKEDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI 206 (206)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~ 206 (206)
+.. ....+.+++++++.+ .|+.|++|+.++++++||+|++||++|++|++++.+.+
T Consensus 482 v~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 482 VPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp --------------------CCCTTTSCSBC--------------CCTTHHHHSTTSS
T ss_pred EEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhh
Confidence 875 334556789999998 89999999999999999999999999999999987754
No 20
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.6e-43 Score=315.37 Aligned_cols=205 Identities=52% Similarity=0.821 Sum_probs=93.4
Q ss_pred CcccccCccceeccC---CccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808 1 GYGMTETCGVVTVEN---PLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID 77 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~ 77 (206)
.||+||++.+++... ........+++|+|+++++++|+|+++++++|.|+.|||+|+||+++.||+++|+.++..|+
T Consensus 376 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~ 455 (979)
T 3tsy_A 376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETID 455 (979)
T ss_dssp CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhcc
Confidence 599999998775542 12224456789999999999999988899999999999999999999999999999999898
Q ss_pred CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808 78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL 157 (206)
Q Consensus 78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 157 (206)
.++||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+....
T Consensus 456 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~ 535 (979)
T 3tsy_A 456 KDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL 535 (979)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------------------
T ss_pred CCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999988888999999988777677
Q ss_pred CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808 158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205 (206)
Q Consensus 158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~ 205 (206)
+.++++++++++|+.|+.|..++++++||+|++||++|++|++++.+.
T Consensus 536 ~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 536 SEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp ------------------------------------------------
T ss_pred CHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 788999999999999999999999999999999999999999988764
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.7e-42 Score=296.27 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=177.7
Q ss_pred CcccccCccceeccCC-ccCCCCCCcceeecCCceEEEEeCCCCCCCCC-CCceEEEEEc--CCCCcccCCChhhccccc
Q 043808 1 GYGMTETCGVVTVENP-LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPP-NQVGELWVRG--PILMPGYFNNEQATKLII 76 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~-g~~Gel~i~~--~~~~~~y~~~~~~~~~~~ 76 (206)
.||+||++.+++.... ......++++|+|+++++++|+|++++++++. |+.|||+|++ |+++.||+++++.+...+
T Consensus 418 ~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~ 497 (663)
T 1ry2_A 418 TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTY 497 (663)
T ss_dssp CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHH
T ss_pred eECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhh
Confidence 5999999987765433 22345678999999999999999548999988 9999999999 589999999998876554
Q ss_pred c--CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808 77 D--KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN 154 (206)
Q Consensus 77 ~--~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 154 (206)
. .+|||+|||++++++||+++|+||.||+||++|++|++.+||+.|.++|.|.+++|++.+++..++.++++|++.+.
T Consensus 498 ~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~ 577 (663)
T 1ry2_A 498 LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNK 577 (663)
T ss_dssp TSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--
T ss_pred hcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCC
Confidence 2 37899999999999999999999999999999999999999999999999999999999988888999999998765
Q ss_pred CC---C-------CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 155 SS---L-------TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 155 ~~---~-------~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
.. . ..++|++++++.|++++.|..++++++||+|++||++|+.|++++..
T Consensus 578 ~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 578 SSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp ----------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred CccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 43 1 25789999999999999999999999999999999999999987754
No 22
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1e-43 Score=299.04 Aligned_cols=201 Identities=26% Similarity=0.456 Sum_probs=88.3
Q ss_pred CcccccCccceeccCCccCCCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE 79 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~ 79 (206)
.||+||++..++.... .......++|+|+ +++.++|+| ++++++|.|+.|||+|+||+++.||+++++.++..|+.+
T Consensus 338 ~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 415 (544)
T 3o83_A 338 VFGMAEGLVNYTRLDD-SDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDED 415 (544)
T ss_dssp EEECTTSCEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTT
T ss_pred eeccccccceeecCCC-chhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCC
Confidence 4999999865543322 1223446889996 899999999 889999999999999999999999999999999999889
Q ss_pred CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808 80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 159 (206)
Q Consensus 80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (206)
+||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+ ...+.
T Consensus 416 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~ 494 (544)
T 3o83_A 416 NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKA 494 (544)
T ss_dssp CCEEEEEEEEECTTSCEEEEEEEC--------------------------------------------------------
T ss_pred CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999998765 34566
Q ss_pred HHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 160 EDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 160 ~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
.++++++.+ .|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 495 ~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 495 VVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 788899988 799999999999999999999999999999998865
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.4e-43 Score=299.75 Aligned_cols=201 Identities=29% Similarity=0.403 Sum_probs=85.7
Q ss_pred CcccccCccceeccCCc--cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc-
Q 043808 1 GYGMTETCGVVTVENPL--LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID- 77 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~- 77 (206)
+||+||++++++..... .......++|+|+++++++|+| +++++++.|+.|||+|+||+++.||+++++.++..|.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 436 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVA 436 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEE
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhccccc
Confidence 49999998877654321 1233456799999999999999 7899999999999999999999999999998877663
Q ss_pred -------CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEE
Q 043808 78 -------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV 150 (206)
Q Consensus 78 -------~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 150 (206)
+.+||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.++++++
T Consensus 437 ~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv 516 (570)
T 4gr5_A 437 DPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVV 516 (570)
T ss_dssp CTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------------------
T ss_pred CCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEE
Confidence 2479999999999999999999999999999999999999999999999999999999988888888999988
Q ss_pred eCCC-CCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHH
Q 043808 151 RSPN-SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKL 202 (206)
Q Consensus 151 ~~~~-~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~ 202 (206)
.... ...+.++|+++++++|+.|+.|..++++++||+|++||++|++|++.-
T Consensus 517 ~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 517 AERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp -----------------------------------------------------
T ss_pred ecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 7543 345678999999999999999999999999999999999999998753
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=9.9e-42 Score=286.08 Aligned_cols=195 Identities=29% Similarity=0.455 Sum_probs=170.2
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
+||+||++.+++..... ....+++|+|+++++++|+| ++++++|.|+.|||+|+|++++.||+++++.+...| .++
T Consensus 331 ~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~ 406 (529)
T 2v7b_A 331 GIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGE 406 (529)
T ss_dssp EEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETT
T ss_pred eEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcC
Confidence 49999997766544322 25668899999999999999 789999999999999999999999999999998877 578
Q ss_pred eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC---
Q 043808 81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL--- 157 (206)
Q Consensus 81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--- 157 (206)
||+|||+++++++|.++|+||.||+||++|++|+|.+||+.+.++|+|.+++|++. +...++.++++++.......
T Consensus 407 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~ 485 (529)
T 2v7b_A 407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEI 485 (529)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHH
T ss_pred CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999998 55566788899988655421
Q ss_pred CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808 158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200 (206)
Q Consensus 158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~ 200 (206)
..+++++++++.|+.|++|..++++++||+|++||++|++|++
T Consensus 486 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 486 LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp HHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred HHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 2468999999999999999999999999999999999999985
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.8e-42 Score=284.62 Aligned_cols=194 Identities=30% Similarity=0.519 Sum_probs=157.0
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
.||+||++..++............++|+|+++++++++|++ .|..|||+|+|+.++.||+++++.+.. + .++
T Consensus 304 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g 375 (501)
T 3ipl_A 304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENG 375 (501)
T ss_dssp EEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETT
T ss_pred cccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCC
Confidence 49999998766554433334567889999999999999954 456799999999999999999988876 4 689
Q ss_pred eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808 81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE 160 (206)
Q Consensus 81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (206)
||+|||+++++++|.++|+||.||+||++|++|+|.+||+.+.++|+|.+++|++.+++..++.++++++.. ...+.+
T Consensus 376 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~ 453 (501)
T 3ipl_A 376 YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKA 453 (501)
T ss_dssp EEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHH
T ss_pred ceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999888888888888864 456789
Q ss_pred HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
+|+++++++|+.|++|..++++++||+|++||++|++|++...+
T Consensus 454 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 454 QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp HHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred HHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 99999999999999999999999999999999999999987664
No 26
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.5e-41 Score=308.18 Aligned_cols=197 Identities=28% Similarity=0.355 Sum_probs=177.0
Q ss_pred CcccccCccceeccCCcc--CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc--
Q 043808 1 GYGMTETCGVVTVENPLL--GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-- 76 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-- 76 (206)
+||+||++.+++...... ......++|+|++++.++|+| ++++++|.|..|||+|+|+.+++||+++++.+++.|
T Consensus 752 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~ 830 (1304)
T 2vsq_A 752 CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIE 830 (1304)
T ss_dssp EECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEE
T ss_pred eEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhcc
Confidence 499999998876553221 233457899999999999999 789999999999999999999999999999987776
Q ss_pred ----cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeC
Q 043808 77 ----DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRS 152 (206)
Q Consensus 77 ----~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 152 (206)
++.+||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.++...+..++++++..
T Consensus 831 ~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~ 910 (1304)
T 2vsq_A 831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR 910 (1304)
T ss_dssp CTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS
T ss_pred CCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC
Confidence 2356999999999999999999999999999999999999999999999999999999998887888999999865
Q ss_pred CCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808 153 PNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200 (206)
Q Consensus 153 ~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~ 200 (206)
. ..+.+++++++++.|+.|++|..++++++||+|++||++|++|.+
T Consensus 911 ~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~ 956 (1304)
T 2vsq_A 911 T--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPK 956 (1304)
T ss_dssp S--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCC
T ss_pred C--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCC
Confidence 4 567789999999999999999999999999999999999998754
No 27
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.9e-41 Score=287.94 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=161.0
Q ss_pred CcccccCccceeccCC--ccCCCCCCcceeecCCceEEEEeCCCCCC-CCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808 1 GYGMTETCGVVTVENP--LLGVQNSGSAGRLVAGVEAQIVCVDTLKP-LPPNQVGELWVRGPILMPGYFNNEQATKLIID 77 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~~~~~~~~-~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~ 77 (206)
+||+||++.+++.... ........++|+|++++.++|+| +++++ +|.|..|||+|+|++++.||+++++.++..|.
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~ 386 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFV 386 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEE
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhc
Confidence 4999999987765422 22234567899999999999999 55555 89999999999999999999999999987773
Q ss_pred CC-------CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEE
Q 043808 78 KE-------GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV 150 (206)
Q Consensus 78 ~~-------~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 150 (206)
.+ +||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.++...+..+++++
T Consensus 387 ~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~- 465 (620)
T 4dg8_A 387 ELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWT- 465 (620)
T ss_dssp EEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEE-
T ss_pred cCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEe-
Confidence 32 7999999999999999999999999999999999999999999999999999999887764444444443
Q ss_pred eCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808 151 RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204 (206)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~ 204 (206)
... +.+.+++.+.|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 466 ~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 466 GKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp ECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred cCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 321 123456778899999999999999999999999999999988754
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=9.6e-42 Score=288.03 Aligned_cols=203 Identities=19% Similarity=0.272 Sum_probs=87.5
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-cCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-DKE 79 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-~~~ 79 (206)
+||+||++..++..... ......++|+|++++.++++|+++++++|.|+.|||+|+|++++.||+++++.+...+ +++
T Consensus 325 ~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~ 403 (562)
T 3ite_A 325 VYGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGR 403 (562)
T ss_dssp EECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTE
T ss_pred eeccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCC
Confidence 49999998877655332 2345678999999999999998889999999999999999999999999998876554 344
Q ss_pred CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcC-CCcceeEEEeecCCCCCceeEEEEEeCCCCCC-
Q 043808 80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSH-PEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL- 157 (206)
Q Consensus 80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~- 157 (206)
+||+|||++++++||+++|+||.||+||++|++|+|.+||+.|.++ +.+.+++++..+++..++..+++++.......
T Consensus 404 ~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~ 483 (562)
T 3ite_A 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR 483 (562)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred EEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc
Confidence 5999999999999999999999999999999999999999999998 77888888888877666665555544332221
Q ss_pred ------------CHHHHHHHHHHhccccCceeEEEEeCCcCCC-CCCcccHHHHHHHHHc
Q 043808 158 ------------TKEDVQKFVVKQVARYKRLRNVTFTNSIPKT-TSGKILRRELIAKLRS 204 (206)
Q Consensus 158 ------------~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t-~~GKv~r~~l~~~~~~ 204 (206)
..++|+++++++|+.|++|+.++++++||+| ++||++|++|++++++
T Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 484 GELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 2348999999999999999999999999998 8999999999998864
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.9e-39 Score=274.41 Aligned_cols=200 Identities=27% Similarity=0.464 Sum_probs=168.1
Q ss_pred CcccccCccceeccCCccCC--------------------------CCCCcceeecCCceEEEEeCCCCCCCCCCCceEE
Q 043808 1 GYGMTETCGVVTVENPLLGV--------------------------QNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGEL 54 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~--------------------------~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel 54 (206)
.||+||++.+++........ ....++|+|+|++.++|+| ++++++|.|+.|||
T Consensus 336 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl 414 (576)
T 3gqw_A 336 CYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERVVGHI 414 (576)
T ss_dssp EEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTBCEEE
T ss_pred cCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCCeEEE
Confidence 49999999888755321100 0112789999999999999 89999999999999
Q ss_pred EEEcCCCCcccCCChhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEE
Q 043808 55 WVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVI 134 (206)
Q Consensus 55 ~i~~~~~~~~y~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~ 134 (206)
+|+|++++.||++++..+...+ .++||+|||++++ +||.++|+||.||+||++|++|+|.+||+.|.++|.|.+++++
T Consensus 415 ~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv 492 (576)
T 3gqw_A 415 CISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAI 492 (576)
T ss_dssp EEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEE
T ss_pred EEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEE
Confidence 9999999999999988776655 7899999999999 7999999999999999999999999999999999999998888
Q ss_pred eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhc-cccCceeEEEEeC--CcCCCCCCcccHHHHHHHHHcc
Q 043808 135 PFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV-ARYKRLRNVTFTN--SIPKTTSGKILRRELIAKLRSK 205 (206)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l-~~~~~p~~~~~v~--~~P~t~~GKv~r~~l~~~~~~~ 205 (206)
+...+. ..+.+++..........+++.+.+.+.+ +.++.|..+.++. +||+|++||++|++|++++++.
T Consensus 493 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 564 (576)
T 3gqw_A 493 AFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKA 564 (576)
T ss_dssp EEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHH
T ss_pred EEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHH
Confidence 776653 3445555544444444568888898888 6899999888886 9999999999999999998764
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.6e-39 Score=274.45 Aligned_cols=200 Identities=26% Similarity=0.359 Sum_probs=166.6
Q ss_pred CcccccCccceeccCCc-------------------------cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEE
Q 043808 1 GYGMTETCGVVTVENPL-------------------------LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELW 55 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~-------------------------~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~ 55 (206)
+||+||++.+++..... .......++|+|+++ ++|+|++++++++.|+.|||+
T Consensus 326 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~ 403 (590)
T 3kxw_A 326 CYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIW 403 (590)
T ss_dssp EEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEE
T ss_pred ccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEE
Confidence 49999999887654221 112234688999998 788997779999999999999
Q ss_pred EEcCCCCcccCCChhhccccccC--------CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHH-hcCC
Q 043808 56 VRGPILMPGYFNNEQATKLIIDK--------EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVL-VSHP 126 (206)
Q Consensus 56 i~~~~~~~~y~~~~~~~~~~~~~--------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i-~~~~ 126 (206)
|+||+++.||+++++.++..|.. .+||+|||+++++ +|.++|+||.||+||++|++|+|.+||+.+ ..+|
T Consensus 404 v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~ 482 (590)
T 3kxw_A 404 VQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPL 482 (590)
T ss_dssp EESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGG
T ss_pred EeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCc
Confidence 99999999999999999877632 3399999999998 999999999999999999999999999999 7789
Q ss_pred Ccc--eeEEEeecCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHHhccc-cCcee-EEEEe--CCcCCCCCCcccHHHH
Q 043808 127 EIL--DAVVIPFPDPEAGEVPIAYVVRSPNS--SLTKEDVQKFVVKQVAR-YKRLR-NVTFT--NSIPKTTSGKILRREL 198 (206)
Q Consensus 127 ~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~l~~-~~~p~-~~~~v--~~~P~t~~GKv~r~~l 198 (206)
.|. +++|++.+++. ++.++++++..+.. ..+.+++.+++++.++. ++.|. .++++ ++||+|++||++|++|
T Consensus 483 ~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L 561 (590)
T 3kxw_A 483 HHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFC 561 (590)
T ss_dssp GGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHH
T ss_pred cccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHH
Confidence 998 78888887765 67788888876553 34567889999998885 77775 44444 8999999999999999
Q ss_pred HHHHHc
Q 043808 199 IAKLRS 204 (206)
Q Consensus 199 ~~~~~~ 204 (206)
++++.+
T Consensus 562 ~~~~~~ 567 (590)
T 3kxw_A 562 RKHLLD 567 (590)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999875
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.3e-35 Score=234.39 Aligned_cols=174 Identities=20% Similarity=0.292 Sum_probs=145.0
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
+||+||+++.++..... ....+.+|.+.|++.+.+.+ .|||+++++.. .++
T Consensus 178 ~YG~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g 228 (358)
T 4gs5_A 178 SYGMTETVSHVALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQ 228 (358)
T ss_dssp EEECGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTC
T ss_pred ccccccccceeeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCc
Confidence 49999999877665432 34567899999999988733 58999987532 578
Q ss_pred eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHh---cCCCcceeEEE-eecCCCCCceeEEEEEeCCCCC
Q 043808 81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV---SHPEILDAVVI-PFPDPEAGEVPIAYVVRSPNSS 156 (206)
Q Consensus 81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~ 156 (206)
||+|||+++++++| ++|+||.||+||++|++|+|.+||+.|. ++|.|.+++|+ ..+++..++.++++++... ..
T Consensus 229 ~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~ 306 (358)
T 4gs5_A 229 TVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PE 306 (358)
T ss_dssp CEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CH
T ss_pred ceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CC
Confidence 99999999999888 7778999999999999999999998774 57899998776 5667777888888887543 34
Q ss_pred CCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808 157 LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205 (206)
Q Consensus 157 ~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~ 205 (206)
...++|+++++++|+.|++|+.++++++||+|++||++|++|++++++.
T Consensus 307 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 307 ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 4567899999999999999999999999999999999999999998764
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2e-32 Score=224.60 Aligned_cols=177 Identities=21% Similarity=0.253 Sum_probs=142.6
Q ss_pred CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG 80 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~ 80 (206)
.||+||+++.++.... ......+.|.+++.++|+|+++++++|.|+.|||+|++.+ ...+ +.+
T Consensus 237 ~YG~TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~ 299 (436)
T 3qov_A 237 SFGMTEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLI 299 (436)
T ss_dssp EEEEGGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCC
T ss_pred cCcchhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEE
Confidence 4999999655322211 1122367788899999999889999999999999999832 2233 678
Q ss_pred eEecCceEEEecCC------c---EEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEe
Q 043808 81 WLHTGDLGYFDEHG------Q---LFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVR 151 (206)
Q Consensus 81 ~~~TGDl~~~~~~g------~---l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 151 (206)
||+|||+++++++| . ++++||.||+||++|++|+|.+||+.|.++|+|.++++++..++..++.++++|++
T Consensus 300 ~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~ 379 (436)
T 3qov_A 300 RYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVEL 379 (436)
T ss_dssp SEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEE
Confidence 99999999999998 4 69999999999999999999999999999999999999998887778899999998
Q ss_pred CCCCCCC----HHHHHHHHHHhcccc-CceeEEEEeC--CcCCCCCCcccHH
Q 043808 152 SPNSSLT----KEDVQKFVVKQVARY-KRLRNVTFTN--SIPKTTSGKILRR 196 (206)
Q Consensus 152 ~~~~~~~----~~~l~~~~~~~l~~~-~~p~~~~~v~--~~P~t~~GKv~r~ 196 (206)
. ....+ .+++.+++++.|+.+ ..|..+.+++ +||+|+ ||++|.
T Consensus 380 ~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 380 S-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp C-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred c-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 7 54444 578999999999988 8999999998 999999 999885
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=5.8e-32 Score=222.26 Aligned_cols=181 Identities=20% Similarity=0.172 Sum_probs=146.2
Q ss_pred CcccccCccc-eeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808 1 GYGMTETCGV-VTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE 79 (206)
Q Consensus 1 ~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~ 79 (206)
.||+||+++. ++..... .....+.|.+++.++|+|+++++++|.|+.|||+|++. +...+ +.
T Consensus 243 ~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~ 305 (443)
T 2y4o_A 243 IYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PV 305 (443)
T ss_dssp EEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CC
T ss_pred ccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hh
Confidence 4999998443 3332221 11125567789999999988899999999999999973 22233 67
Q ss_pred CeEecCceEEEecC-CcE-----EEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808 80 GWLHTGDLGYFDEH-GQL-----FIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP 153 (206)
Q Consensus 80 ~~~~TGDl~~~~~~-g~l-----~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 153 (206)
+||+|||+++++++ |++ +++||.||+||++|++|+|.+||+.|.++|+|.++++++.+++..++.++++|+..+
T Consensus 306 ~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~ 385 (443)
T 2y4o_A 306 IRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRS 385 (443)
T ss_dssp SSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECH
T ss_pred heeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECC
Confidence 89999999999999 986 899999999999999999999999999999999999888877666788889988764
Q ss_pred --C---CCCCHHHHHHHHHHhcccc-CceeEEEEe--CCcCCCCCCcccHHHH
Q 043808 154 --N---SSLTKEDVQKFVVKQVARY-KRLRNVTFT--NSIPKTTSGKILRREL 198 (206)
Q Consensus 154 --~---~~~~~~~l~~~~~~~l~~~-~~p~~~~~v--~~~P~t~~GKv~r~~l 198 (206)
. ...+.+++++++++.|+.+ ..|..+.++ ++||+|++||++|+..
T Consensus 386 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 386 EAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 2 2234578999999999887 488877777 5999999999998643
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=1.6e-31 Score=219.33 Aligned_cols=179 Identities=19% Similarity=0.199 Sum_probs=145.8
Q ss_pred CcccccCccc-eeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808 1 GYGMTETCGV-VTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE 79 (206)
Q Consensus 1 ~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~ 79 (206)
.||+||+++. ++..... .....+.|.+++.++|+|+++++++|.|+.|||++++. +...+ +.
T Consensus 241 ~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~ 303 (437)
T 2y27_A 241 IYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PI 303 (437)
T ss_dssp EEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CC
T ss_pred cCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hh
Confidence 4999998443 3332221 11125677889999999988899999999999999973 22233 67
Q ss_pred CeEecCceEEEec-CCcE-----EEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808 80 GWLHTGDLGYFDE-HGQL-----FIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP 153 (206)
Q Consensus 80 ~~~~TGDl~~~~~-~g~l-----~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 153 (206)
+||+|||++++++ +|++ +++||.||+|+++|++|+|.+||+.|.++|+|.++++++.+++..++.++++|++.+
T Consensus 304 ~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~ 383 (437)
T 2y27_A 304 IRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCP 383 (437)
T ss_dssp CSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCT
T ss_pred heeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECC
Confidence 8999999999999 6985 899999999999999999999999999999999999888877666788999998765
Q ss_pred CCC---CCHHHHHHHHHHhcccc-CceeEEEEe--CCcCCCCCCcccHHH
Q 043808 154 NSS---LTKEDVQKFVVKQVARY-KRLRNVTFT--NSIPKTTSGKILRRE 197 (206)
Q Consensus 154 ~~~---~~~~~l~~~~~~~l~~~-~~p~~~~~v--~~~P~t~~GKv~r~~ 197 (206)
... .+.+++++++++.|+.+ ..|..+.++ ++||+|+ ||++|+.
T Consensus 384 ~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 384 ETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred CccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 543 33478999999999987 588888888 5999999 9999863
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.84 E-value=1.5e-21 Score=161.53 Aligned_cols=99 Identities=28% Similarity=0.461 Sum_probs=84.1
Q ss_pred CcccccCccceeccCCccC-----------------------CCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEE
Q 043808 1 GYGMTETCGVVTVENPLLG-----------------------VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~-----------------------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~ 57 (206)
+||+||++.+++....... .....++|+|++ ++++|+|+++++++|.|+.|||+|+
T Consensus 348 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~ 426 (480)
T 3t5a_A 348 SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVH 426 (480)
T ss_dssp EEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEE
T ss_pred cccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEe
Confidence 4999999988876543211 123458999999 9999999777899999999999999
Q ss_pred cCCCCcccCCChhhcccccc-----------CCCeEecCceEEEecCCcEEEecc
Q 043808 58 GPILMPGYFNNEQATKLIID-----------KEGWLHTGDLGYFDEHGQLFIVDR 101 (206)
Q Consensus 58 ~~~~~~~y~~~~~~~~~~~~-----------~~~~~~TGDl~~~~~~g~l~~~GR 101 (206)
||+++.||+++++.+++.|+ +++||+|||+++++ ||.++|+||
T Consensus 427 g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 427 GDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp STTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999987774 46799999999996 999999998
No 36
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.70 E-value=5.6e-17 Score=108.06 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=72.2
Q ss_pred ccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC----CHHHHHHHHHHhcc-ccC
Q 043808 100 DRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL----TKEDVQKFVVKQVA-RYK 174 (206)
Q Consensus 100 GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~~l~-~~~ 174 (206)
||.+|+|+++|.+++|.+||+.+.++|++.++++++.+++..++.+++++++ +.... +.++|.+.+.+.+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777777889999988 54322 33556666666554 334
Q ss_pred ceeEEEEeC--CcCCCCCCcccHH
Q 043808 175 RLRNVTFTN--SIPKTTSGKILRR 196 (206)
Q Consensus 175 ~p~~~~~v~--~~P~t~~GKv~r~ 196 (206)
.+..+.++. +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 455677776 99999 9999873
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.70 E-value=1.2e-16 Score=106.42 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=73.0
Q ss_pred ccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHHhcccc-Cc
Q 043808 100 DRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK---EDVQKFVVKQVARY-KR 175 (206)
Q Consensus 100 GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~-~~ 175 (206)
.|.||+|+++|.|++|.+||+.+.++|++.++++++.+++..++.+.++++..+....+. .++.+.+.+.+..+ .+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999998888899999998877655443 34555555555432 23
Q ss_pred eeEEEEe--CCcCCCCCCcccH
Q 043808 176 LRNVTFT--NSIPKTTSGKILR 195 (206)
Q Consensus 176 p~~~~~v--~~~P~t~~GKv~r 195 (206)
+..+.++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 4445555 689998 799987
No 38
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.10 E-value=8.5e-11 Score=94.02 Aligned_cols=90 Identities=14% Similarity=0.030 Sum_probs=58.2
Q ss_pred CcccccCccceeccCCccCCCCCCcceee------cCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccc
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAGRL------VAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKL 74 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p------~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~ 74 (206)
.||+||+++++.... ..++|+| +|++.++|+|+++++++|.|+.|||+|++.+ ..
T Consensus 264 ~YG~TE~~~~~~~~~-------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~------------~~ 324 (369)
T 3hgu_A 264 SYGSTSALGVSRSLL-------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLS------------PW 324 (369)
T ss_dssp EEEEGGGTEEEEECC-------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEE------------TT
T ss_pred ccCchhhhcceeccc-------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcC------------cc
Confidence 499999987663221 1157888 9999999999769999999999999998732 11
Q ss_pred cccCCCeEecCceEEEecC--C-------cEEEeccccceEEECCe
Q 043808 75 IIDKEGWLHTGDLGYFDEH--G-------QLFIVDRIKELIKCNGF 111 (206)
Q Consensus 75 ~~~~~~~~~TGDl~~~~~~--g-------~l~~~GR~dd~i~~~G~ 111 (206)
.+ -.+|+|||++.+.+. | .+..++|.++..++.|.
T Consensus 325 ~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 325 AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 11 235899999988653 2 25567888888887774
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.58 E-value=3.5e-07 Score=76.99 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=70.9
Q ss_pred CcccccCccceeccCCccCCCCCCc-ceeecCC-ceEEEEeCCCC---------------CCCCCCCceEEEEEcCCCCc
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGS-AGRLVAG-VEAQIVCVDTL---------------KPLPPNQVGELWVRGPILMP 63 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~-~G~p~~~-~~~~i~~~~~~---------------~~~~~g~~Gel~i~~~~~~~ 63 (206)
.|++||+ .+.. ... ....+.. ....+|+ ...+.++.++. ..++.|..+||+|++-+
T Consensus 335 ~Y~ASEg-~~gi-~~~--p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~--- 407 (609)
T 4b2g_A 335 MYASSEC-YFGL-NLN--PMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA--- 407 (609)
T ss_dssp EEECSSC-EEEE-CSC--TTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---
T ss_pred cccccce-eeee-ecC--CCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhhh---
Confidence 4899996 2222 221 1111222 2233444 56677764432 34678999999998732
Q ss_pred ccCCChhhccccccCCCeEecCceEEEec----CCcEEEeccccceEEECCeEeChHHHHHHHhc
Q 043808 64 GYFNNEQATKLIIDKEGWLHTGDLGYFDE----HGQLFIVDRIKELIKCNGFQVAPAELEGVLVS 124 (206)
Q Consensus 64 ~y~~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~ 124 (206)
|+| .|++||+++... ..++.|.||.++++++.|+++...+||+++..
T Consensus 408 GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 408 GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 233 289999999863 46799999999999999999999999999984
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.47 E-value=2.9e-06 Score=71.20 Aligned_cols=130 Identities=13% Similarity=0.039 Sum_probs=81.6
Q ss_pred CcccccCccceeccCCccCCCCCCc-ceeecCC-ceEEEEeCCCC----------CCCCCCCceEEEEEcCCCCcccCCC
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGS-AGRLVAG-VEAQIVCVDTL----------KPLPPNQVGELWVRGPILMPGYFNN 68 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~-~G~p~~~-~~~~i~~~~~~----------~~~~~g~~Gel~i~~~~~~~~y~~~ 68 (206)
.|++||+ ++.+... ....++. ....+|+ ...+.++.+.. ..++.|+.+||+|++-+ |.|
T Consensus 335 ~Y~ASEg--~~gi~~~--p~~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~-- 405 (581)
T 4epl_A 335 DYGSSEG--WIAANVT--PRLSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY-- 405 (581)
T ss_dssp CEEETTE--EEEECCC--TTSCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCEEEEEEESTT---SCS--
T ss_pred ceeccce--eeeeecC--CCCCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCeEEEEEeecc---cee--
Confidence 5899996 2322221 1222221 2334444 45566664322 35678999999998742 222
Q ss_pred hhhccccccCCCeEecCceEEEec----CCcEEEeccccceEEECCeEeChHHHHHHHhcC------C--CcceeEEEee
Q 043808 69 EQATKLIIDKEGWLHTGDLGYFDE----HGQLFIVDRIKELIKCNGFQVAPAELEGVLVSH------P--EILDAVVIPF 136 (206)
Q Consensus 69 ~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~------~--~v~~~~v~~~ 136 (206)
.|++||+++... ..++.|.||.++++++.|+++...+|++++... . .+.+..+..-
T Consensus 406 ------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d 473 (581)
T 4epl_A 406 ------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID 473 (581)
T ss_dssp ------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred ------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC
Confidence 389999999854 247899999999999999999999999998852 2 3556655542
Q ss_pred cCCCCCceeEEEEEeC
Q 043808 137 PDPEAGEVPIAYVVRS 152 (206)
Q Consensus 137 ~~~~~~~~~~~~v~~~ 152 (206)
. ......-+++++..
T Consensus 474 ~-~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 474 V-STDPGHYAIFWEIS 488 (581)
T ss_dssp C-SSSSCEEEEEEEES
T ss_pred C-CCCCCcEEEEEeec
Confidence 2 22223455556654
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.47 E-value=5.6e-07 Score=75.57 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=71.2
Q ss_pred CcccccCccceeccCCccCCCCCCcce-eecCC-ceEEEEeCCCC--------CCCCCCCceEEEEEcCCCCcccCCChh
Q 043808 1 GYGMTETCGVVTVENPLLGVQNSGSAG-RLVAG-VEAQIVCVDTL--------KPLPPNQVGELWVRGPILMPGYFNNEQ 70 (206)
Q Consensus 1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G-~p~~~-~~~~i~~~~~~--------~~~~~g~~Gel~i~~~~~~~~y~~~~~ 70 (206)
.|++||+ ++.+... ....+...+ ..+|+ ...+.++.+.. ..+..|..+||+|++-+ |.|
T Consensus 330 ~Y~ASEg--~~gi~~~--p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~---- 398 (581)
T 4eql_A 330 TYGSSET--TFGINLD--PLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY---- 398 (581)
T ss_dssp EEECSSC--EEEECSC--TTSCGGGCCEEECTTSSEEEEEECSTTCCSSCEEGGGCCTTCEEEEEEECSS---SCC----
T ss_pred ccccccc--eeeeccC--CCCCcccCceeecCCcEEEEEEeccccCCCcEeCHHHcCCCceEEEEEeecc---cee----
Confidence 4899995 2222221 111112222 33444 56677774332 33568999999998742 222
Q ss_pred hccccccCCCeEecCceEEEec----CCcEEEeccccceEEECCeEeChHHHHHHHhcCC
Q 043808 71 ATKLIIDKEGWLHTGDLGYFDE----HGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHP 126 (206)
Q Consensus 71 ~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~ 126 (206)
.|++||+++... ..++.|.||.++++.+.|+++...+||+++.+..
T Consensus 399 ----------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 399 ----------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp ----------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred ----------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence 289999999875 3578999999999999999999999999998653
No 42
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=41.23 E-value=52 Score=19.17 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=35.2
Q ss_pred hHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhccccCce
Q 043808 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRL 176 (206)
Q Consensus 115 ~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p 176 (206)
..++.+.+.+.|.|.+|..+.-... +.+.+.. .+.++|.+.+.+.+......
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-----~d~~~l~~~i~~~l~~~~gV 66 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-----DTLKDLDQFITEKIRKMPEI 66 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-----SSHHHHHHHHHTTGGGCTTE
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-----CCHHHHHHHHHHHhccCCCE
Confidence 4789999999999999987753322 4444433 34577888877666654433
No 43
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=34.86 E-value=97 Score=20.52 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=38.6
Q ss_pred ccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeec-CCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhccc
Q 043808 100 DRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFP-DPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVAR 172 (206)
Q Consensus 100 GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 172 (206)
.+..|+|++.-..+++.++.+.+.. |..-..+.|.-. +...+..-+..+.+..........|.+...+...+
T Consensus 4 ~~~~d~i~it~e~l~~~~~~~~v~~-p~~GAvv~F~G~VR~~~~g~~V~~L~ye~y~~ma~~~l~~I~~ea~~r 76 (135)
T 4ap8_A 4 EKSKDVINFTAEKLSVDEVSQLVIS-PLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQK 76 (135)
T ss_dssp CCCCEEEEEESSCCCHHHHHHHTCC-TTCSEEEEEEEECCSEETTEEEEEEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHhcC-CCCCeEEEEEEEECCCCCCCcEEEEEEEecchHHHHHHHHHHHHHHHh
Confidence 3567889999999999998887654 444333333322 22222233444444433344444555544443333
No 44
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=31.16 E-value=78 Score=18.16 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=34.0
Q ss_pred hHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhccccC
Q 043808 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYK 174 (206)
Q Consensus 115 ~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 174 (206)
..++.+.+.+.|.|.++..+.-.. .+.+.+. ..+.+++.+.+.+.+....
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~-----d~l~~v~-----~~d~~~l~~~~~~~l~~~~ 64 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVY-----DIVVKVE-----ADSMDKLKDFVTNTIRKLP 64 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSC-----SEEEEEE-----CSSHHHHHHHHHHTGGGST
T ss_pred HHHHHHHHhCCCCeEEEEEEeccC-----CEEEEEE-----ECCHHHHHHHHHHHhcCCC
Confidence 478899999999999998774332 2444443 2345778888876666543
No 45
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=27.35 E-value=1.1e+02 Score=23.28 Aligned_cols=80 Identities=14% Similarity=0.018 Sum_probs=36.4
Q ss_pred HHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHH
Q 043808 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRE 197 (206)
Q Consensus 118 ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~ 197 (206)
+|++-.+.|.|..--.+.-++-.. ..-+|+|++-.........+..++...|.+..+.-.|+++++. .+++-+|.+
T Consensus 26 l~~v~~~~~~v~~gG~~~P~~c~~-~~kvAIIIPyRdR~~hL~~fl~~lhp~L~rQ~l~y~I~VieQ~---~~~~FNRa~ 101 (287)
T 3lw6_A 26 LKLVEQQNPKVKLGGRYTPMDGAS-VHKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAHHIFVLNQV---DRFRFNRAS 101 (287)
T ss_dssp ---------------------CCC-CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEC---SSSCCCHHH
T ss_pred HHHHHHhCCCcccCCEECCCccCC-cceEEEEEEeCCHHHHHHHHHHHHHHHHHHcCCceEEEEEecC---CCCccchhh
Confidence 444445566666444443222222 2345555554444444455666667777777777677887763 567888888
Q ss_pred HHHH
Q 043808 198 LIAK 201 (206)
Q Consensus 198 l~~~ 201 (206)
|.+.
T Consensus 102 LlNv 105 (287)
T 3lw6_A 102 LINV 105 (287)
T ss_dssp HHHH
T ss_pred eecc
Confidence 8765
No 46
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=27.29 E-value=1e+02 Score=18.26 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhccc
Q 043808 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVAR 172 (206)
Q Consensus 115 ~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 172 (206)
..++.+.+.++|.|.++..+.-... +.+.+... +.+++.+.+.+.+..
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~~-----d~~~l~~~l~~~l~~ 62 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRLK-----DVEELDDVVTQGILS 62 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEES-----SGGGHHHHCCCCCTT
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEEC-----CHHHHHHHHHHhccc
Confidence 5788899999999999988854332 45555433 234555665544443
No 47
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=22.60 E-value=94 Score=19.26 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=22.4
Q ss_pred ecCCceEEEEeCCCCCCCCC----CC--ceEEEEEcCC
Q 043808 29 LVAGVEAQIVCVDTLKPLPP----NQ--VGELWVRGPI 60 (206)
Q Consensus 29 p~~~~~~~i~~~~~~~~~~~----g~--~Gel~i~~~~ 60 (206)
.+|+-++.|++..+|..... |+ .|++++-|..
T Consensus 14 i~~~E~V~IvNvnNG~Rf~TYvI~GerGSG~I~lNGAA 51 (96)
T 1vc3_B 14 ILPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAA 51 (96)
T ss_dssp CCTTCEEEEEETTTCCEEEEECEEECTTTTCEEEEGGG
T ss_pred CCCCCEEEEEECCCCceEEEEEEEccCCCCeEEEchHH
Confidence 46788889999888876532 22 2788888753
No 48
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=20.19 E-value=1.2e+02 Score=19.37 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=22.4
Q ss_pred ecCCceEEEEeCCCCCCCC-------CCCceEEEEEcCC
Q 043808 29 LVAGVEAQIVCVDTLKPLP-------PNQVGELWVRGPI 60 (206)
Q Consensus 29 p~~~~~~~i~~~~~~~~~~-------~g~~Gel~i~~~~ 60 (206)
.+|+-++.|++..+|.... .|+ |++++.|..
T Consensus 41 i~~~E~V~I~NvnNG~Rf~TYvI~GerGS-g~I~lNGAA 78 (114)
T 3oug_A 41 IIENEKVQVVNLNNGERLETYVIKGEPNS-KTIALNGPA 78 (114)
T ss_dssp CCTTBEEEEEETTTCCEEEEEEEEECTTS-CCEEEEGGG
T ss_pred CCcCCEEEEEECCCCceEEEEEEEccCCC-CEEEeCCHH
Confidence 4688899999988887653 233 788887753
Done!