BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043811
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 197/417 (47%), Gaps = 48/417 (11%)
Query: 21 LKTHKLSLLDQLAPDIYTSLLFFYNGPSRVYDETNTSTNNVYHRLQSSLSKTLNLYYPFA 80
LK +K+S LDQL + + FY P ++N L+ SLSK L +YP A
Sbjct: 23 LKCYKISHLDQLLLTCHIPFILFYPNPL----DSNLDPAQTSQHLKQSLSKVLTHFYPLA 78
Query: 81 GKLLQDNYVVDCDDSGIPFVETRGPSSISMSEVLKNP-EMNTLQQLLPFN--PNKKYLSS 137
G++ N VDC+DSG+PFVE R +S+ ++N E+ L Q LP P K +
Sbjct: 79 GRI-NVNSSVDCNDSGVPFVEAR--VQAQLSQAIQNVVELEKLDQYLPSAAYPGGK-IEV 134
Query: 138 TDDVNAAVQINHFDCGGVAIGLNFRHIVADGAASVGFIQNWAKLHSSDDNSII-NYKHTV 196
+DV AV+I+ F+CGG AIG+N H +AD + F+ W + ++ N+
Sbjct: 135 NEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPNFDLA- 193
Query: 197 VDCTDTFPPNQEISSYARRINEWQRAPECVTKRFVFDGGKVAALRGEIIKKDASLSLNQY 256
FPP S +E V KRFVFD K+ ALR + AS + +
Sbjct: 194 ---ARHFPPVDNTPSPELVPDE-----NVVMKRFVFDKEKIGALRAQ-----ASSASEEK 240
Query: 257 RPTRFEAVSGLIWDALIAMDREE-NVGSTCIASVPVNLRNRMNPPLPEDCIGN----LYH 311
+R + V IW +I + R + + + VNLR+RMNPPLP +GN L+
Sbjct: 241 NFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFA 300
Query: 312 AVTCTANKTSARNINQF---TKMVSDDFVRKVYQDGGIVFVNQYKEAVEEIMKGDNGVRL 368
AV +K I + DD ++ + ++ + +E L
Sbjct: 301 AVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQE-------------L 347
Query: 369 FGFTGVIGLPFYEPDFGWGKPVWS-TTAMSLNNIAVLLGTRDGKGVEAWVGLPINDM 424
FT L FY+ DFGWGKP+ + TT N A+L+ TR G GVEAW+ + ++M
Sbjct: 348 LSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEM 404
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 171/389 (43%), Gaps = 52/389 (13%)
Query: 29 LDQLAPDIYTSLLFFY--NGPSRVYDETNTSTNNVYHRLQSSLSKTLNLYYPFAGKLLQD 86
+D + P+ +T ++FY G S +D L+ +LS+ L +YP AG+L +D
Sbjct: 29 VDLVVPNFHTPSVYFYRPTGSSNFFDAKV---------LKDALSRALVPFYPMAGRLKRD 79
Query: 87 N---YVVDCDDSGIPFVETRGPSSISMSEVLKNPEMNTLQQLLPFNPNKKYLSSTDDVNA 143
++C+ G+ FVE S + + L++L+P + +SS +
Sbjct: 80 EDGRIEIECNGEGVLFVEAE--SDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALL-- 135
Query: 144 AVQINHFDCGGVAIGLNFRHIVADGAASVGFIQNWAKLHSSDDNSIINY-KHTVVDCTDT 202
+Q+ +F CGGV++G+ RH ADG + + FI +W+ + D ++ + T++ D
Sbjct: 136 VLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDP 195
Query: 203 FPPNQEISSY--------ARRINEWQRAPECVTKRFVFDGGKVAALRGEIIKKDASLSLN 254
P + Y + + + PE F +++AL+ + + ++S +
Sbjct: 196 PQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTISYS 255
Query: 255 QYRPTRFEAVSGLIWD-ALIAMDREENVGSTCIASVPVNLRNRMNPPLPEDCIGNLYHAV 313
Y E ++G +W A A E + G+ + + R R+ P LP GN+
Sbjct: 256 SY-----EMLAGHVWRCACKARGLEVDQGTKLY--IATDGRARLRPSLPPGYFGNVIFTA 308
Query: 314 TCTANKT---------SARNINQFTKMVSDDFVRKVYQDGGIVFVNQYKEAVEEIMKGDN 364
T A +A I+ + +D++R + + ++ +++G +
Sbjct: 309 TPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALD------YLELQPDLKALVRGAH 362
Query: 365 GVRL--FGFTGVIGLPFYEPDFGWGKPVW 391
+ G T + LP ++ DFGWG+P++
Sbjct: 363 TFKCPNLGITSWVRLPIHDADFGWGRPIF 391
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 170/389 (43%), Gaps = 52/389 (13%)
Query: 29 LDQLAPDIYTSLLFFY--NGPSRVYDETNTSTNNVYHRLQSSLSKTLNLYYPFAGKLLQD 86
+D + P+ +T ++FY G S +D L+ +LS+ L +YP AG+L +D
Sbjct: 32 VDLVVPNFHTPSVYFYRPTGSSNFFDAKV---------LKDALSRALVPFYPMAGRLKRD 82
Query: 87 N---YVVDCDDSGIPFVETRGPSSISMSEVLKNPEMNTLQQLLPFNPNKKYLSSTDDVNA 143
++C+ G+ FVE S + + L++L+P + +SS +
Sbjct: 83 EDGRIEIECNGEGVLFVEAE--SDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALL-- 138
Query: 144 AVQINHFDCGGVAIGLNFRHIVADGAASVGFIQNWAKLHSSDDNSIINY-KHTVVDCTDT 202
+Q+ +F CGGV++G+ RH ADG + + FI +W+ + D ++ + T++ D
Sbjct: 139 VLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDP 198
Query: 203 FPPNQEISSY--------ARRINEWQRAPECVTKRFVFDGGKVAALRGEIIKKDASLSLN 254
P + Y + + PE F +++AL+ + + ++S +
Sbjct: 199 PQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYS 258
Query: 255 QYRPTRFEAVSGLIWD-ALIAMDREENVGSTCIASVPVNLRNRMNPPLPEDCIGNLYHAV 313
Y E ++G +W A A E + G+ + + R R+ P LP GN+
Sbjct: 259 SY-----EMLAGHVWRCACKARGLEVDQGTKLY--IATDGRARLRPSLPPGYFGNVIFTA 311
Query: 314 TCTANKT---------SARNINQFTKMVSDDFVRKVYQDGGIVFVNQYKEAVEEIMKGDN 364
T A +A I+ + +D++R + + ++ +++G +
Sbjct: 312 TPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALD------YLELQPDLKALVRGAH 365
Query: 365 GVRL--FGFTGVIGLPFYEPDFGWGKPVW 391
+ G T + LP ++ DFGWG+P++
Sbjct: 366 TFKXPNLGITSWVRLPIHDADFGWGRPIF 394
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 169/389 (43%), Gaps = 52/389 (13%)
Query: 29 LDQLAPDIYTSLLFFY--NGPSRVYDETNTSTNNVYHRLQSSLSKTLNLYYPFAGKLLQD 86
+D + P+ +T ++FY G S +D L+ +LS+ L +YP AG+L +D
Sbjct: 32 VDLVVPNFHTPSVYFYRPTGSSNFFDAKV---------LKDALSRALVPFYPMAGRLKRD 82
Query: 87 N---YVVDCDDSGIPFVETRGPSSISMSEVLKNPEMNTLQQLLPFNPNKKYLSSTDDVNA 143
++C+ G+ FVE S + + L++L+P + +SS +
Sbjct: 83 EDGRIEIECNGEGVLFVEAE--SDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALL-- 138
Query: 144 AVQINHFDCGGVAIGLNFRHIVADGAASVGFIQNWAKLHSSDDNSIINY-KHTVVDCTDT 202
+Q+ +F GGV++G+ RH ADG + + FI +W+ + D ++ + T++ D
Sbjct: 139 VLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDP 198
Query: 203 FPPNQEISSY--------ARRINEWQRAPECVTKRFVFDGGKVAALRGEIIKKDASLSLN 254
P + Y + + PE F +++AL+ + + ++S +
Sbjct: 199 PQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYS 258
Query: 255 QYRPTRFEAVSGLIWD-ALIAMDREENVGSTCIASVPVNLRNRMNPPLPEDCIGNLYHAV 313
Y E ++G +W A A E + G+ + + R R+ P LP GN+
Sbjct: 259 SY-----EMLAGHVWRCACKARGLEVDQGTKLY--IATDGRARLRPSLPPGYFGNVIFTA 311
Query: 314 TCTANKT---------SARNINQFTKMVSDDFVRKVYQDGGIVFVNQYKEAVEEIMKGDN 364
T A +A I+ + +D++R + + ++ +++G +
Sbjct: 312 TPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALD------YLELQPDLKALVRGAH 365
Query: 365 GVRL--FGFTGVIGLPFYEPDFGWGKPVW 391
+ G T + LP ++ DFGWG+P++
Sbjct: 366 TFKXPNLGITSWVRLPIHDADFGWGRPIF 394
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 148/376 (39%), Gaps = 45/376 (11%)
Query: 41 LFFYNGPSRVYDETNTSTNNVYHRLQSSLSKTLNLYYPFAGKLLQDNYVVDCDDSGIPFV 100
LFFY P T T N+ H SLS TL +YPF GKL+ Y I +V
Sbjct: 45 LFFYELPITRSQFTETVVPNIKH----SLSITLKHFYPFVGKLVV--YPAPTKKPEICYV 98
Query: 101 E------TRGPSSISMSEVLKNPEMNT--LQQLLPFNPNKKYLSSTDDVNA-AVQINHFD 151
E T ++ ++E+ N N L+P LS + +VQ+ F
Sbjct: 99 EGDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFP 158
Query: 152 CGGVAIGLNFRHIVADGAASVGFIQNWAKLHSS---DDNSIINYKHTVVDCTDTFPPNQE 208
G+AIG+ H + D + F++ W + S D++ + N + D +P E
Sbjct: 159 NQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDE 218
Query: 209 ISSYARRINEWQRAPECVTKRFVFDGGKVAALRGEIIKKDASLSLNQYR-----PT---- 259
+Y +R + VT+ G LR I A ++ + R PT
Sbjct: 219 --AYLKRAKVESFNEDYVTQSL---AGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYV 273
Query: 260 -RFEAVSGLIWDALIAMDREENVGSTCIASVPVNLRNRMNPPLPEDCIGNLYHAVTCTAN 318
F IW + IA R + + + P++ R RM PP+P GN A
Sbjct: 274 SSFTVACAYIW-SCIAKSRNDKLQ---LFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAK 329
Query: 319 KTSARNINQF---TKMVSDDFVRKV--YQDGGIVFVNQYKEAVEEIMKGDNGVRLFGFTG 373
F K++ ++ + + Y+DG + E+ +++ + +G
Sbjct: 330 TNLLIGKEGFITAAKLIGENLHKTLTDYKDG---VLKDDMESFNDLVSEGMPTTMTWVSG 386
Query: 374 VIGLPFYEPDFGWGKP 389
L FY+ DFGWGKP
Sbjct: 387 TPKLRFYDMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 146/376 (38%), Gaps = 45/376 (11%)
Query: 41 LFFYNGPSRVYDETNTSTNNVYHRLQSSLSKTLNLYYPFAGKLLQDNYVVDCDDSGIPFV 100
LFFY P T T N+ H SLS TL +YPF GKL+ Y I +V
Sbjct: 45 LFFYELPITRSQFTETVVPNIKH----SLSITLKHFYPFVGKLVV--YPAPTKKPEICYV 98
Query: 101 E------TRGPSSISMSEVLKNPEMNT--LQQLLPFNPNKKYLSSTDDVNA-AVQINHFD 151
E T ++ ++E+ N N L+P LS + +VQ+ F
Sbjct: 99 EGDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFP 158
Query: 152 CGGVAIGLNFRHIVADGAASVGFIQNWAKLHSS---DDNSIINYKHTVVDCTDTFPPNQE 208
G+AIG+ H + D + F++ W + S D++ + N + D +P E
Sbjct: 159 NQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDE 218
Query: 209 ISSYARRINEWQRAPECVTKRFVFDGGKVAALRGEIIKKDASLSLNQYR-----PT---- 259
+Y +R + VT+ G LR I A ++ + R PT
Sbjct: 219 --AYLKRAKVESFNEDYVTQSL---AGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYV 273
Query: 260 -RFEAVSGLIWDALIAMDREENVGSTCIASVPVNLRNRMNPPLPEDCIGNLYHAVTCTAN 318
F IW + IA R + + + P++ R R PP+P GN A
Sbjct: 274 SSFTVACAYIW-SCIAKSRNDKLQ---LFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAK 329
Query: 319 KTSARNINQF---TKMVSDDFVRKV--YQDGGIVFVNQYKEAVEEIMKGDNGVRLFGFTG 373
F K++ ++ + + Y+DG + E+ +++ +G
Sbjct: 330 TNLLIGKEGFITAAKLIGENLHKTLTDYKDG---VLKDDXESFNDLVSEGXPTTXTWVSG 386
Query: 374 VIGLPFYEPDFGWGKP 389
L FY+ DFGWGKP
Sbjct: 387 TPKLRFYDXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 135/378 (35%), Gaps = 46/378 (12%)
Query: 41 LFFYNGPSRVYDETNTSTNNVYHRLQSSLSKTLNLYYPFAGKLLQDNYVVDCDDSGIPFV 100
+ FY P D T + L+ SLS TL Y P AG N D SG P +
Sbjct: 40 ILFYKLPISRPDFVQT----IIPTLKDSLSLTLKYYLPLAG-----NVACPQDWSGYPEL 90
Query: 101 ETRGPSSISMSEVLKNPEMNTLQQLLPFNPNKKY-----LSSTDDVNA-------AVQIN 148
+S+S+ + + N L P N Y L+ D A+Q+
Sbjct: 91 RYVTGNSVSVIFSESDXDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVT 150
Query: 149 HFDCGGVAIGLNFRHIVADGAASVGFIQNWAKLHS--SDDNSIINYKHTVVDCTDTFPPN 206
F G++IG H+ DGA V F++ WA L+ D+ + N D + PN
Sbjct: 151 LFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPN 210
Query: 207 -------QEISSYAR--RINEWQRAPECVTKRFVFDGGKVAALRGEIIKKDASLSLNQYR 257
E Y + ++ P+ V F+ + L+ ++ + L+
Sbjct: 211 GVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLT----H 266
Query: 258 PTRFEAVSGLIWDALI----AMDREENVGSTCIASVPVNLRNRMNPPLPEDCIGNLYHAV 313
T F +W +I A E + + R + NPPLP GN
Sbjct: 267 VTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGY 326
Query: 314 TCTANKTSARNINQFTKMVS--DDFVRKVYQDGGIVFVNQYKEAVEEIMKGDNGVRLFGF 371
+ FT V + +RK +D + + + +++ + R
Sbjct: 327 VARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYDKV----DAKRSLSV 382
Query: 372 TGVIGLPFYEPDFGWGKP 389
G L Y DFGWG+P
Sbjct: 383 AGSPKLDLYAADFGWGRP 400
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 324 NINQFTKMVSDDFVRKVYQDGGIVFVNQY-------KEAVEEIM-----KGDNGVRLFGF 371
+I + ++VSDD + V +D VFV + +E + +I+ KG VRL G
Sbjct: 243 DIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLKG- 301
Query: 372 TGVIGLPFYEPDFGWGKPVWSTTAMSLNNIAVLLGTRDGKGVEAWVGLPIN 422
G PF FG G T + +V+ G G A+ G+P+
Sbjct: 302 ----GDPFI---FGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLT 345
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 324 NINQFTKMVSDDFVRKVYQDGGIVFVNQY-------KEAVEEIM-----KGDNGVRLFGF 371
+I + ++VSDD + V +D VFV + +E + +I+ KG VRL G
Sbjct: 243 DIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLKG- 301
Query: 372 TGVIGLPFYEPDFGWGKPVWSTTAMSLNNIAVLLGTRDGKGVEAWVGLPIN 422
G PF FG G T + +V+ G G A+ G+P+
Sbjct: 302 ----GDPFI---FGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLT 345
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 141 VNAAVQINHFDCGGVAIGLNFRHIVADGAASVGFIQNWAKL 181
V+ V I H CGG+ L+F DG S FI+ W K+
Sbjct: 104 VSNIVVIGHSACGGIKGLLSFPF---DGTYSTDFIEEWVKI 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,707,314
Number of Sequences: 62578
Number of extensions: 581934
Number of successful extensions: 1274
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 15
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)