BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043813
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 18/93 (19%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPTNCCNGT---------------VCTCLKQAVSGISY 77
+TC V ++L PC++Y+ G + CC G CTCLK A IS
Sbjct: 2 ITCGQVTSNLAPCLAYLRNTGPL-GRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISG 60
Query: 78 TRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 110
LG AAGLP CG+NIPY+ISPSTDCS+VQ
Sbjct: 61 --INLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 23/96 (23%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPTNCCNG---------------TVCTCLKQ---AVSG 74
+TC V + L PC+ YV GGAVP CCNG C CLKQ +V G
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61
Query: 75 ISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 110
++ AA LPGKCG++IPY+IS ST+C+ V+
Sbjct: 62 VNPNN-----AAALPGKCGVSIPYKISASTNCATVK 92
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 17/93 (18%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPTNCCNG---------------TVCTCLKQAVSGISY 77
++C V +DL+PC++Y++ G CC G C CLK A I
Sbjct: 2 ISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI-- 59
Query: 78 TRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 110
T+ AA LPGKCG+NIPY+IS +T+C+ V+
Sbjct: 60 TKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 92
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 18/94 (19%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPT-NCCNG---------------TVCTCLKQAVSGIS 76
++C V + + PC+SY G+ P+ CC+G C CLK A +G+S
Sbjct: 2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS 61
Query: 77 YTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 110
G AA +P KCG++IPY IS STDCSRV
Sbjct: 62 G--LNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPTNCCNG---------------TVCTCLKQAVSGISY 77
+ C V + + PC++YV G CCNG TVC CLK GI
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH- 59
Query: 78 TRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 109
L AA +P KC +N+PY ISP DCSR+
Sbjct: 60 -NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPTNCCNG---------------TVCTCLKQAVSGISY 77
+ C V + + PC++YV G CCNG TVC CLK GI
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH- 59
Query: 78 TRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 109
L AA +P KC +N+PY ISP DCSR+
Sbjct: 60 -NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 23/96 (23%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPTNCCNG---------------TVCTCLKQA---VSG 74
+TC V +L C+ ++ GG VP +CC G VC+CLK A V G
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60
Query: 75 ISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 110
I+ A LPGKCG+NIPY+IS ST+C+ +
Sbjct: 61 INPNN-----AEALPGKCGVNIPYKISTSTNCNSIN 91
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPTNCCNG---------------TVCTCLKQAVSGISY 77
+TC V + + PC++Y G CC+G T C CLK A GI
Sbjct: 1 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60
Query: 78 TRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 110
G AA +P KCG+++PY IS S DCSRV
Sbjct: 61 --LNAGNAASIPSKCGVSVPYTISASIDCSRVS 91
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 33 VTCRTVVNDLTPCVSYVSYGGAVPTNCCNG---------------TVCTCLKQAVSGISY 77
+ C V + + PC+SYV G CC+G + C CLK GI
Sbjct: 1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 78 TRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 109
A +P KCG+N+PY IS + DCSRV
Sbjct: 61 LNEDN--ARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 34 TCRTVVNDLTPCVSYVSYGGAVPTNCCNG---------------TVCTCLKQAVSGISYT 78
C V + + PC+SYV G CC+G + C CLK GI
Sbjct: 2 DCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL 61
Query: 79 RYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 109
A +P KCG+N+PY IS + DCSRV
Sbjct: 62 NEDN--ARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 21 LMGSAFVSTKAQVTCRTVVNDLTPCVSYVSYGGAVPTNCCNGTVCT 66
L G +T V +ND P + +Y G VP N N + T
Sbjct: 196 LQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIAT 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,955,854
Number of Sequences: 62578
Number of extensions: 100490
Number of successful extensions: 278
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 13
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)