BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043814
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/515 (43%), Positives = 329/515 (63%), Gaps = 18/515 (3%)
Query: 15 DNFIKCLT--INSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNE 72
+NF+KC + I + V P YT ++ ++S+L S+ QNLR++ + PKP I TP N
Sbjct: 5 ENFLKCFSKHIPNNVANP-KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 73 SHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAW 132
SH++A ++CS+ + + +R RSGGHD EG+SY+SQ+ PF ++DL + SI++D++ TAW
Sbjct: 64 SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAW 121
Query: 133 VQAGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDAR 192
V+AGAT+GE+YY I EK+ F G CP+V +MR YGL ADN++DA
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181
Query: 193 IVDASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QG 251
+V+ G++LDR++MGEDLFWAIR +FGII AWK+KL K +E G
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241
Query: 252 ATKILYKWQQVADKLDEDLFIR---VIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVI 308
K+ KWQ +A K D+DL + + + + K K TV ++++F G + L+ ++
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301
Query: 309 HKRFPELGLTRNDCIETSWIRSVLYFAGYPN----NTEPEILLDVQSLGKNYFKAKLDFV 364
+K FPELG+ + DC E SWI + ++++G N N + EILLD + K F KLD+V
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361
Query: 365 QEPVPETVLEGLWKMVLEEDIPIILW--NPYGGIMSKISESEIAFPHRKGNIFTIQYMNA 422
++P+PET + + + + EED+ ++ PYGGIM +ISES I FPHR G ++ + Y +
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421
Query: 423 WKDGDEKNGTKHIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG-INKKFNTSYTEASAW 481
W+ +++ KHI W+R +Y++ PYVS PR AY+NYRDLDLG N +YT+A W
Sbjct: 422 WE--KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW 479
Query: 482 GTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 516
G KYF NFNRLV+VK KVDP+N FR+EQSIPP+P
Sbjct: 480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/502 (41%), Positives = 300/502 (59%), Gaps = 19/502 (3%)
Query: 16 NFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHV 75
+F+ CLT + IP Y ++ ++ SV S+ +N+++L KP +I TP N SH+
Sbjct: 12 DFLTCLTKD----IPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASHI 67
Query: 76 RAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQA 135
+AAV+C R + +R+RSGGHDYEGLSY S+ PF ++D+ K+R++ +D TAWV +
Sbjct: 68 QAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDS 127
Query: 136 GATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIVD 195
GA +G+LYY IA+ S GF AG+C ++ ++RKYG ADNV+DA++VD
Sbjct: 128 GAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVVD 187
Query: 196 ASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATKI 255
A GR+LDR+AMGED FWAIR SFGI+ +W+VKL K +++GA +
Sbjct: 188 AQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDL 247
Query: 256 LYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPEL 315
+ KWQ VA L +DL IR++ A + AL+LG + L+ ++ RFPEL
Sbjct: 248 VTKWQTVAPALPDDLMIRIMAMGQGA----------MFEALYLGTCKDLVLLMTARFPEL 297
Query: 316 GLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEG 375
G+ C E +WI SV Y P T ++L ++ K + K K D+V EP+P++ E
Sbjct: 298 GMNATHCKEMTWIESVPYIPMGPKGTVRDLLNRTSNI-KAFGKYKSDYVLEPIPKSDWEK 356
Query: 376 LWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHI 435
++ +++ +++ +PYGG ++ + ES FP R G +F IQY+ W E
Sbjct: 357 IFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWF--GEGAAALPT 414
Query: 436 GWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFN--TSYTEASAWGTKYFKDNFNRL 493
W R +YD+M PYVS PR AYVNYRDLDLG+N+ ++Y WG KYFK NF RL
Sbjct: 415 QWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERL 474
Query: 494 VRVKIKVDPDNIFRHEQSIPPV 515
R K K+DP++ FR+EQSIPP+
Sbjct: 475 ARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/504 (40%), Positives = 300/504 (59%), Gaps = 19/504 (3%)
Query: 15 DNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESH 74
++F+ CL IP Y ++ ++ SVL + +N R+ P KP +I TP SH
Sbjct: 9 EDFLGCLVKE----IPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSH 64
Query: 75 VRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQ 134
+++AV+C R + +R+RSGGHDYEGLSY S F ++DL K+R++ VD TAWV
Sbjct: 65 IQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVD 124
Query: 135 AGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIV 194
+GA +GELYY I + S T F AG+CP++ ++RKYG+ A+NV+D ++V
Sbjct: 125 SGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLV 184
Query: 195 DASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATK 254
DA+G++ D+++MG+D FWA+R SFGI++AW+VKL SKT+ +GA
Sbjct: 185 DANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVD 244
Query: 255 ILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPE 314
I+ KWQ VA +L DL IR+I Q GPK ++ A++LG + L ++ +FPE
Sbjct: 245 IINKWQVVAPQLPADLMIRIIAQ----GPKA------TFEAMYLGTCKTLTPLMSSKFPE 294
Query: 315 LGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLE 374
LG+ + C E SWI+S+ + + + LL+ Q+ K + + K D+V +P P+TV E
Sbjct: 295 LGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWE 354
Query: 375 GLWKM-VLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTK 433
+ +++ I++++PYG +S ES FPHRKG +F IQY+N W
Sbjct: 355 QILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYW--FAPGAAAA 412
Query: 434 HIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLGINKKFN--TSYTEASAWGTKYFKDNFN 491
+ W + +Y+YM PYVS PR AY NYRD+DLG N+ N ++Y WG KYFK NF
Sbjct: 413 PLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFE 472
Query: 492 RLVRVKIKVDPDNIFRHEQSIPPV 515
RL K KVDP + FR+EQSIPP+
Sbjct: 473 RLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/507 (38%), Positives = 273/507 (53%), Gaps = 18/507 (3%)
Query: 15 DNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESH 74
++ + CLT N + F ++S F L S QN + + KP I P ++
Sbjct: 25 NDLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 82
Query: 75 VRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQ 134
+ + C R +R+RSGGH YEGLSY S +TPF L+DL L + +D+ TAWV+
Sbjct: 83 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVE 140
Query: 135 AGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIV 194
+G+T+GELYY I E S+ GFTAG CP+V M RKYGL ADNVVDA ++
Sbjct: 141 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 200
Query: 195 DASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 253
DA+G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 201 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 260
Query: 254 KILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFP 313
+L+KWQ VA++L+ED + V+ G +K V + G FP
Sbjct: 261 SLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFP 314
Query: 314 ELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVL 373
ELGL D +E SW S Y AG T ++ + FK K+D +EP+P
Sbjct: 315 ELGLVEEDYLEMSWGESFAYLAGL--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAF 372
Query: 374 EGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTK 433
GL + + +E I N +GG MSKIS FPHR G ++Y+ AW ++K T+
Sbjct: 373 YGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTE 432
Query: 434 HIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG----INKKFNTSYTEAS-AWGTKYFKD 488
+ W+ ++Y++M P+VS PR YVN+ DLDLG NK + E S +WG YF
Sbjct: 433 FLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLS 492
Query: 489 NFNRLVRVKIKVDPDNIFRHEQSIPPV 515
N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 493 NYERLIRAKTLIDPNNVFNHPQSIPPM 519
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/507 (38%), Positives = 273/507 (53%), Gaps = 18/507 (3%)
Query: 15 DNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESH 74
++ + CLT N + F ++S F L S QN + + KP I P ++
Sbjct: 6 NDLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 75 VRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQ 134
+ + C R +R+RSGGH YEGLSY S +TPF L+DL L + +D+ TAWV+
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVE 121
Query: 135 AGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIV 194
+G+T+GELYY I E S+ GFTAG CP+V M RKYGL ADNVVDA ++
Sbjct: 122 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 195 DASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 253
DA+G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 182 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 241
Query: 254 KILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFP 313
+L+KWQ VA++L+ED + V+ G +K V + G FP
Sbjct: 242 SLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFP 295
Query: 314 ELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVL 373
ELGL D +E SW S Y AG T ++ + FK K+D +EP+P
Sbjct: 296 ELGLVEEDYLEMSWGESFAYLAGL--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAF 353
Query: 374 EGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTK 433
GL + + +E I N +GG MSKIS FPHR G ++Y+ AW ++K T+
Sbjct: 354 YGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTE 413
Query: 434 HIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG----INKKFNTSYTEAS-AWGTKYFKD 488
+ W+ ++Y++M P+VS PR YVN+ DLDLG NK + E S +WG YF
Sbjct: 414 FLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLS 473
Query: 489 NFNRLVRVKIKVDPDNIFRHEQSIPPV 515
N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 474 NYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/507 (38%), Positives = 273/507 (53%), Gaps = 18/507 (3%)
Query: 15 DNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESH 74
++ + CLT N + F ++S F L S QN + + KP I P ++
Sbjct: 6 NDLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 75 VRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQ 134
+ + C R +R+RSGGH YEGLSY S +TPF L+DL L + +D+ TAWV+
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVE 121
Query: 135 AGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIV 194
+G+T+GELYY I E S+ GFTAG CP+V M RKYGL ADNVVDA ++
Sbjct: 122 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 195 DASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 253
DA+G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 182 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 241
Query: 254 KILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFP 313
+L+KWQ VA++L+ED + V+ G +K V + G FP
Sbjct: 242 SLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFP 295
Query: 314 ELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVL 373
ELGL D +E SW S Y AG T ++ + FK K+D +EP+P
Sbjct: 296 ELGLVEEDYLEMSWGESFAYLAGL--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAF 353
Query: 374 EGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTK 433
GL + + +E I N +GG MSKIS FPHR G ++Y+ AW ++K T+
Sbjct: 354 YGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTE 413
Query: 434 HIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG----INKKFNTSYTEAS-AWGTKYFKD 488
+ W+ ++Y++M P+VS PR YVN+ DLDLG NK + E S +WG YF
Sbjct: 414 FLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLS 473
Query: 489 NFNRLVRVKIKVDPDNIFRHEQSIPPV 515
N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 474 NYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 197/506 (38%), Positives = 272/506 (53%), Gaps = 18/506 (3%)
Query: 16 NFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHV 75
+ + CLT N + F ++S F L S QN + + KP I P ++ +
Sbjct: 1 DLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 76 RAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQA 135
+ C R +R+RSGGH YEGLSY S +TPF L+DL L + +D+ TAWV++
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 136 GATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIVD 195
G+T+GELYY I E S+ GFTAG CP+V M RKYGL ADNVVDA ++D
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 196 ASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGATK 254
A+G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 255 ILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPE 314
+L+KWQ VA++L+ED + V+ G +K V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 315 LGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLE 374
LGL D +E SW S Y AG T ++ + FK K+D +EP+P
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGL--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFY 348
Query: 375 GLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKH 434
GL + + +E I N +GG MSKIS FPHR G ++Y+ AW ++K T+
Sbjct: 349 GLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEF 408
Query: 435 IGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG----INKKFNTSYTEAS-AWGTKYFKDN 489
+ W+ ++Y++M P+VS PR YVN+ DLDLG NK + E S +WG YF N
Sbjct: 409 LDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSN 468
Query: 490 FNRLVRVKIKVDPDNIFRHEQSIPPV 515
+ RL+R K +DP+N+F H QSIPP+
Sbjct: 469 YERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/507 (38%), Positives = 272/507 (53%), Gaps = 18/507 (3%)
Query: 15 DNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESH 74
++ + CLT N + F ++S F L S QN + + KP I P ++
Sbjct: 3 NDLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 60
Query: 75 VRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQ 134
+ + C R +R+RSGG YEGLSY S +TPF L+DL L + +D+ TAWV+
Sbjct: 61 LSNTIRCIRKGSWTIRLRSGGASYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVE 118
Query: 135 AGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIV 194
+G+T+GELYY I E S+ GFTAG CP+V M RKYGL ADNVVDA ++
Sbjct: 119 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 178
Query: 195 DASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 253
DA+G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 179 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 238
Query: 254 KILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFP 313
+L+KWQ VA++L+ED + V+ G +K V + G FP
Sbjct: 239 SLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFP 292
Query: 314 ELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVL 373
ELGL D +E SW S Y AG T ++ + FK K+D +EP+P
Sbjct: 293 ELGLVEEDYLEMSWGESFAYLAGL--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAF 350
Query: 374 EGLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTK 433
GL + + +E I N +GG MSKIS FPHR G ++Y+ AW ++K T+
Sbjct: 351 YGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTE 410
Query: 434 HIGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG----INKKFNTSYTEAS-AWGTKYFKD 488
+ W+ ++Y++M P+VS PR YVN+ DLDLG NK + E S +WG YF
Sbjct: 411 FLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLS 470
Query: 489 NFNRLVRVKIKVDPDNIFRHEQSIPPV 515
N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 471 NYERLIRAKTLIDPNNVFNHPQSIPPM 497
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/506 (38%), Positives = 271/506 (53%), Gaps = 18/506 (3%)
Query: 16 NFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHV 75
+ + CLT N + F ++S F L S QN + + KP I P ++ +
Sbjct: 1 DLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 76 RAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQA 135
+ C R +R+RSGGH YEGLSY S +TPF L+DL L + +D+ TAWV++
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 136 GATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIVD 195
G+T+GELYY I E S+ GFTAG P+V M RKYGL ADNVVDA ++D
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 196 ASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGATK 254
A+G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 255 ILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPE 314
+L+KWQ VA++L+ED + V+ G +K V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 315 LGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLE 374
LGL D +E SW S Y AG T ++ + FK K+D +EP+P
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGL--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFY 348
Query: 375 GLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKH 434
GL + + +E I N +GG MSKIS FPHR G ++Y+ AW ++K T+
Sbjct: 349 GLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEF 408
Query: 435 IGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG----INKKFNTSYTEAS-AWGTKYFKDN 489
+ W+ ++Y++M P+VS PR YVN+ DLDLG NK + E S +WG YF N
Sbjct: 409 LDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSN 468
Query: 490 FNRLVRVKIKVDPDNIFRHEQSIPPV 515
+ RL+R K +DP+N+F H QSIPP+
Sbjct: 469 YERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/506 (38%), Positives = 271/506 (53%), Gaps = 18/506 (3%)
Query: 16 NFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHV 75
+ + CLT N + F ++S F L S QN + + KP I P ++ +
Sbjct: 1 DLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 76 RAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQA 135
+ C R +R+RSGGH YEGLSY S +TPF L+DL L + +D+ TAWV++
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 136 GATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNVVDARIVD 195
G+T+GELYY I E S+ GFTAG P+V M RKYGL ADNVVDA ++D
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 196 ASGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGATK 254
A+G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 255 ILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPE 314
+L+KWQ VA++L+ED + V+ G +K V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 315 LGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLE 374
LGL D +E SW S Y AG T ++ + FK K+D +EP+P
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGL--ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFY 348
Query: 375 GLWKMVLEEDIPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKH 434
GL + + +E I N +GG MSKIS FPHR G ++Y+ AW ++K T+
Sbjct: 349 GLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEF 408
Query: 435 IGWIRRLYDYMAPYVSMFPRAAYVNYRDLDLG----INKKFNTSYTEAS-AWGTKYFKDN 489
+ W+ ++Y++M P+VS PR YVN+ DLDLG NK + E S +WG YF N
Sbjct: 409 LDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSN 468
Query: 490 FNRLVRVKIKVDPDNIFRHEQSIPPV 515
+ RL+R K +DP+N+F H QSIPP+
Sbjct: 469 YERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 112/487 (22%), Positives = 203/487 (41%), Gaps = 56/487 (11%)
Query: 62 KPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFF--LLDLAKL 119
+P+ ++ V AV + + +RSGGH +EG ++ P ++D++++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF-----VDDPAVRAVIDMSQM 109
Query: 120 RSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMR 179
R + D V+ GAT+GE Y + AG+CP V + R
Sbjct: 110 RQVFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLGGGYGPLSR 168
Query: 180 KYGLGADNV--VDARIVDASGRILDREAMG------EDLFWAIRXXXXXSFGIILAWKVK 231
+ G+ AD++ V+ +VDASGR A +L+WA +FGI+ +
Sbjct: 169 RDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIV----TR 224
Query: 232 LXXXXXXXXXXXXSKTLEQGATKIL---YKWQQVADKLDEDLFIRVIIQLA--NAGPKGK 286
S+ L + T L W A L E+ F R+I +
Sbjct: 225 YWFRTPGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQSNSAA 282
Query: 287 KTVTTSYNALFLGDSERLLQVIHKRFPELGLTRNDCIETSWIRSVLYFAGYP----NNTE 342
T S +++F +S Q++ + GL + + ++ +V G +TE
Sbjct: 283 GTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTE 342
Query: 343 PEILLDV----QSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWN-----PY 393
P + + + G + K+K ++++P L++ + + +W Y
Sbjct: 343 PWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQ---VWGEVSLYSY 399
Query: 394 GGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIRRLYDYMAPYVSMFP 453
GG ++ + E+ A R +I + W D + ++ WIR +Y + P
Sbjct: 400 GGKVNSVPETATATAQRD-SIIKVWMSATWMDPAHDDA--NLAWIREIYREIFATTGGVP 456
Query: 454 ------RAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFR 507
++NY D+DL +++++NTS W T Y+K N+ RL +VK + DP ++FR
Sbjct: 457 VPDDRTEGTFINYPDVDL-VDERWNTS---GVPWYTLYYKGNYPRLQKVKARWDPRDVFR 512
Query: 508 HEQSIPP 514
H S+ P
Sbjct: 513 HALSVRP 519
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 128/516 (24%), Positives = 203/516 (39%), Gaps = 85/516 (16%)
Query: 50 AQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRI--RSGGHDYEGLSYVSQI 107
+NLR++ PE I L S + SR +R R+ RSGGH YE S +
Sbjct: 50 GENLRFVG----DPEEIH--LVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV 103
Query: 108 ETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXXXX 167
++D+++L ++ D V+AGAT+G +Y + G CP V
Sbjct: 104 R---VVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVT-LPGGACPDVGAGG 159
Query: 168 XXXXXXXXTMMRKYGLGAD--NVVDARIVDASGR----ILDREAM--GEDLFWAIRXXXX 219
+ R +G D + V+ +VDASG I RE DL+WA
Sbjct: 160 HILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGG 219
Query: 220 XSFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATKIL-----YKWQQVADKLDEDLFIRV 274
+FG+++ + ++ + L + ++L + W+ LDE F R+
Sbjct: 220 GNFGVVVRYWLR---TAEADVPPEPGRLLPRPPAEVLLNTTVWPWE----GLDEAAFARL 272
Query: 275 IIQLA-----NAGP-----------------KGKKTVTTSYNALFLGDSERLLQVIHKRF 312
+ N+GP G +TT +A +RL +
Sbjct: 273 VRNHGRWFEQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVS 332
Query: 313 PELGLT-RNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPET 371
+G+ +D W+ S + P I D G+ KA + + +
Sbjct: 333 EGVGVQPHSDTRRLPWLHSTRW---------PGIAGDGDMTGRAKIKAA--YARRSFDDR 381
Query: 372 VLEGLWKMVLEED----IPIILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDGD 427
+ L+ + D ++ YGG ++ + A R +I I Y+ W+D
Sbjct: 382 QIGTLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRD-SILKIVYVTTWED-- 438
Query: 428 EKNGTKHIGWIRRLY-DYMA-----PYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAW 481
H+ WIR LY D A P AYVNY D+DL ++++NTS W
Sbjct: 439 PAQDPVHVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLA-DEEWNTS---GVPW 494
Query: 482 GTKYFKDNFNRLVRVKIKVDPDNIFRHEQS--IPPV 515
Y+KD + RL VK + DP N+FRH S +PP
Sbjct: 495 SELYYKDAYPRLQAVKARWDPRNVFRHALSVRVPPA 530
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 119/512 (23%), Positives = 199/512 (38%), Gaps = 83/512 (16%)
Query: 48 SSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQI 107
S + N R++V +PE F P V A++ + + RSGGH G +V
Sbjct: 24 SHSDNHRFVV----EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHC--GQDFVG-- 75
Query: 108 ETPF--FLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXX 165
TP +LDL L +I + V +GAT+ ++ + + N G C +V
Sbjct: 76 -TPRRDLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGM 133
Query: 166 XXXXXXXXXXTMMRKYGLGADNV--VDARIVDAS-------GRILDREAMGEDLFWAIRX 216
+ R+ GL D++ V+ +VD S R D +GE LFWA
Sbjct: 134 GGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTG 192
Query: 217 XXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATKILYKWQQVADKLDEDLFIRVII 276
+FG++ A++ + K+++ W + DE F+ V+
Sbjct: 193 GGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMI----DETSFVTVMR 248
Query: 277 QLAN--------AGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPE-------------- 314
+ P+ T N + G + ++Q PE
Sbjct: 249 RFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEG 308
Query: 315 ---LGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSLGKN-YFKAKLDFVQEPVPE 370
+G+ R + SW+ Y + + ++ +S K+ Y +A P E
Sbjct: 309 TGVVGIPRGGVM--SWLTGTRYM----SQADCGDVMGARSASKSAYHRAA------PTDE 356
Query: 371 TVLEGLWKMVLEEDIP----IILWNPYGGIMSKISESEIAFPHRKGNIFTIQYMNAWKDG 426
+ + L D P +++N YGG +++ S+ A P R ++ + +AW+D
Sbjct: 357 QL--SVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRD-SVVKSSWFSAWQDA 413
Query: 427 DEKNGTKHIGWIRRLYD-YMAPYVSMFPR-----AAYVNYRDLDLGINKKFNTSYTEASA 480
+ H+GW+R LY+ + A + Y+NY D DL ++ N S
Sbjct: 414 ELDE--LHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL-LDPARNRS---GEP 467
Query: 481 WGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSI 512
W Y+KDN+ RL K DP N F H SI
Sbjct: 468 WHHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 109/477 (22%), Positives = 189/477 (39%), Gaps = 65/477 (13%)
Query: 63 PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI 122
P I +H+++AV C++ L + + +SGGH Y + E ++ L ++ +
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGG--ENGHLMVQLDRMIDV 94
Query: 123 EVDINDNT--AWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRK 180
+ ND T A V+ GA +G L + +K + + G CP V
Sbjct: 95 -ISYNDKTGIAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHM 152
Query: 181 YGLGADNVVDARIVDASGRILDREAM-GEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXX 239
+GL D+VV +V A GRI++ A DLFW I+ +FGI+ W KL
Sbjct: 153 HGLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVW--KLATFPAPK 209
Query: 240 XXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIQLANAGPKGKKTVTTSYNALFL 298
TL + T L + V D V ++ + G L+
Sbjct: 210 VLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAG-----NPGIEGLYY 264
Query: 299 GDSERLLQVIHKRFPEL--GLTRNDCIETSWIRSVLYFAGY---------PNNTEPEILL 347
G E+ L G N +WI SVL ++ + P L
Sbjct: 265 GTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSL 324
Query: 348 DVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLEEDIPIILWNPYGG---IMSKISESE 404
++S+ + K +D+ + V V + W L+ +GG ++K++ +E
Sbjct: 325 TLKSIKGDAVKNFVDYYFD-VSNKVKDRFWFYQLDV---------HGGKNSQVTKVTNAE 374
Query: 405 IAFPHRKGNIFTIQYMNAWKDGDEKNGTKHI---GWIRRLYDYMAPYVSMFPRA---AYV 458
A+PHR ++ IQ+ + + + T GW+ + P++ Y+
Sbjct: 375 TAYPHRD-KLWLIQFYDRYDNNQTYPETSFKFLDGWVNSV-------TKALPKSDWGMYI 426
Query: 459 NYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 515
NY D + ++ + T Y+ +N RL ++K K DP + F + Q++ PV
Sbjct: 427 NYADPRM--DRDYATKV---------YYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/529 (22%), Positives = 213/529 (40%), Gaps = 63/529 (11%)
Query: 19 KCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAA 78
+CL V + TP++ +L+ L+ N R+ +P++I + V A
Sbjct: 25 RCLPPAGPVKV------TPDDPRYLN-LKLRGANSRF----NGEPDYIHLVGSTQQVADA 73
Query: 79 VICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGAT 138
V + + +RSGGH +E ++ ++D++ L I D + N ++ G T
Sbjct: 74 VEETVRTGKRVAVRSGGHCFEDFVDNPDVK---VIIDMSLLTEIAYDPSMNAFLIEPGNT 130
Query: 139 IGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLGADNV--VDARIVDA 196
+ E+Y ++ N G+C V + R++G D + V+ +V+
Sbjct: 131 LSEVYEKLYLGWNVT-IPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNK 189
Query: 197 SGR------ILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLEQ 250
G+ +R+ DL+WA +FG++ + +++ K
Sbjct: 190 QGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPAT 249
Query: 251 GATK-ILYKWQQVADKLDEDLFIRVIIQLA-----NAGPKGKKTVTTSYNALFLGDSERL 304
T + + W + E F R++ N+GP T ++ L +G+
Sbjct: 250 LLTSTVTFDWA----GMTEAAFSRLLRNHGEWYERNSGPD--SPYTGLWSQLMIGNEVPG 303
Query: 305 LQVIHKRFP-ELGLTRNDC--IETSWIRSVLYFAGYPNNTEPEILLD---VQSLGKN--- 355
+ P ++ TR D + + I +V+ G P PE + + G+
Sbjct: 304 MGESGFMMPIQVDATRPDARRLLDAHIEAVI--DGVPPAEVPEPIEQRWLASTPGRGGRG 361
Query: 356 -YFKAKLDFVQEPVPETVLEGLWKMVLEED---IPIILWNPYGGIMSKISESEIAFPHRK 411
K K ++++ + + ++ +++ + D + YGG ++ + + A P R
Sbjct: 362 PASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRD 421
Query: 412 GNIFTIQYMNAWKDGDEKNGTKHIGWIRRLY-DYMA-----PYVSMFPRAAYVNYRDLDL 465
I + Y+ W + N KH+ W+R+LY D A P + AY+NY D DL
Sbjct: 422 A-ILKVNYITGW--ANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDL 478
Query: 466 GINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPP 514
+ NTS W Y+K N RL +VK DP N F H SI P
Sbjct: 479 A-DPGLNTS---GVPWHDLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 110/499 (22%), Positives = 193/499 (38%), Gaps = 78/499 (15%)
Query: 46 LESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVS 105
++ +A NLR P I P + + AAV C D + + + GGH Y +
Sbjct: 30 MDGTAFNLRVDY----DPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85
Query: 106 QIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXX 165
E +L+L ++ + VD N N A +Q GA +G + ++ N + + G CP+V
Sbjct: 86 --EDGHLMLELDRMYRVSVDDN-NVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGV 141
Query: 166 XXXXXXXXXXTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDLFWAIRXXXXXSFGI 224
+GL D ++ A +V A I+ E DLFWA+R F I
Sbjct: 142 GGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALR-GGGGGFAI 200
Query: 225 ILAWKVKLXXXXXXXXXXXXSKTLEQ----GATKILYKWQQVADKLDEDLFIRVIIQLAN 280
+ ++ + T + K L W Q + + +L +R+ I AN
Sbjct: 201 VSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEIN-AN 257
Query: 281 AGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELG--LTRNDCIETSW---IRSVLYFA 335
A ++ F G+++ L +++ + G T + +ET W I + LY A
Sbjct: 258 A---------LNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGA 308
Query: 336 G-------------YPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLE 382
Y N+ L L +A +D+ + G W
Sbjct: 309 DLNITYNYDVHEYFYANS------LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----- 357
Query: 383 EDIPIILWNPYGG---IMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIR 439
I W+ +GG ++ +S E A+ HR ++ Q+ ++ D +
Sbjct: 358 -----IQWDFHGGKNSALAAVSNDETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGFE 411
Query: 440 RLYDYMAPYVSMFP---RAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRV 496
+ ++A P + Y NY D T+ T+ A Y++ N +L +
Sbjct: 412 FMQGFVATIEDTLPEDRKGKYFNYAD----------TTLTKEEA-QKLYWRGNLEKLQAI 460
Query: 497 KIKVDPDNIFRHEQSIPPV 515
K K DP+++F + S+ P+
Sbjct: 461 KAKYDPEDVFGNVVSVEPI 479
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 109/499 (21%), Positives = 192/499 (38%), Gaps = 78/499 (15%)
Query: 46 LESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVS 105
++ +A NLR P I P + + AAV C D + + + GGH Y +
Sbjct: 30 MDGTAFNLRVDY----DPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85
Query: 106 QIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXX 165
E +L+L ++ + VD N N A +Q GA +G + ++ N + + G P+V
Sbjct: 86 --EDGHLMLELDRMYRVSVDDN-NVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGV 141
Query: 166 XXXXXXXXXXTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDLFWAIRXXXXXSFGI 224
+GL D ++ A +V A I+ E DLFWA+R F I
Sbjct: 142 GGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALR-GGGGGFAI 200
Query: 225 ILAWKVKLXXXXXXXXXXXXSKTLEQ----GATKILYKWQQVADKLDEDLFIRVIIQLAN 280
+ ++ + T + K L W Q + + +L +R+ I AN
Sbjct: 201 VSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEIN-AN 257
Query: 281 AGPKGKKTVTTSYNALFLGDSERLLQVIHKRFPELG--LTRNDCIETSW---IRSVLYFA 335
A ++ F G+++ L +++ + G T + +ET W I + LY A
Sbjct: 258 A---------LNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGA 308
Query: 336 G-------------YPNNTEPEILLDVQSLGKNYFKAKLDFVQEPVPETVLEGLWKMVLE 382
Y N+ L L +A +D+ + G W
Sbjct: 309 DLNITYNYDVHEYFYANS------LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----- 357
Query: 383 EDIPIILWNPYGG---IMSKISESEIAFPHRKGNIFTIQYMNAWKDGDEKNGTKHIGWIR 439
I W+ +GG ++ +S E A+ HR ++ Q+ ++ D +
Sbjct: 358 -----IQWDFHGGKNSALAAVSNDETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGFE 411
Query: 440 RLYDYMAPYVSMFP---RAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRV 496
+ ++A P + Y NY D T+ T+ A Y++ N +L +
Sbjct: 412 FMQGFVATIEDTLPEDRKGKYFNYAD----------TTLTKEEA-QKLYWRGNLEKLQAI 460
Query: 497 KIKVDPDNIFRHEQSIPPV 515
K K DP+++F + S+ P+
Sbjct: 461 KAKYDPEDVFGNVVSVEPI 479
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 12/176 (6%)
Query: 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKL 119
+ +P I L+ V +V + D + + +RSGGH+ G + +LDL +
Sbjct: 36 LQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYA----TNDGGIVLDLRLM 91
Query: 120 RSIEVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMR 179
SI +D + A + G G+L + A K T G+ P V +
Sbjct: 92 NSIHIDTAGSRARIGGGVISGDLV-KEAAKFGLAAVT-GMHPKVGFCGLALNGGVGFLTP 149
Query: 180 KYGLGADNVVDARIVDASGRIL---DREAMGEDLFWAIRXXXXXSFGIILAWKVKL 232
KYGL +DN++ A +V A+G ++ D E +LFWA+R +FG++ +V+L
Sbjct: 150 KYGLASDNILGATLVTATGDVIYCSDDER--PELFWAVR-GAGPNFGVVTEVEVQL 202
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 472 NTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPP 514
N S A Y + ++RL VK + DP+N FRH +I P
Sbjct: 414 NNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 65 FIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEV 124
+ P + V A + + R+ L + G G E L K+R E+
Sbjct: 54 LVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIR--EI 111
Query: 125 DINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVXXXXXXXXXXXXTMMRKYGLG 184
D + NT V+AGA + + + AE + G S T YGL
Sbjct: 112 DTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLA 171
Query: 185 ADNVVDARIVDASGRI------LDREAMG---EDLFWAIRXXXXXSFGIILAWKVKL 232
D + +V A GR+ L ++ G DLF + GII A +KL
Sbjct: 172 RDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAE----GTLGIITAATLKL 224
>pdb|3EVZ|A Chain A, Crystal Strucure Of Methyltransferase From Pyrococcus
Furiosus
Length = 230
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 295 ALFLGDSERLLQVIHKRFPELGLTRNDC---IETSWIRSVLYFAG 336
AL+L D E+LL VI +R +LG + D + T W S+++F G
Sbjct: 176 ALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKG 220
>pdb|4B63|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To Nadp
And Ornithine
pdb|4B64|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To Nadp
And Lysine
pdb|4B65|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Reduced State
Bound To Nadp(H)
pdb|4B66|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Reduced State
Bound To Nadp And Arg
pdb|4B67|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Re-Oxidised
State Bound To Nadp And Ornithine
pdb|4B68|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Re-Oxidised
State Bound To Nadp And Arg
pdb|4B69|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To
Ornithine
Length = 501
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 313 PELGLTRNDCIETSWIRSVLYFAGYPNNTEPEILLDVQSL---GKNYFKAKLDFVQEPVP 369
PE ND ET + +++ GY N +L VQ L G++ +K D+ E P
Sbjct: 383 PESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDP 442
Query: 370 ETVLE--GLW 377
V G+W
Sbjct: 443 SKVSSEAGIW 452
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,292,890
Number of Sequences: 62578
Number of extensions: 627226
Number of successful extensions: 1242
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 26
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)