Query 043814
Match_columns 524
No_of_seqs 263 out of 2166
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.1E-38 4.6E-43 335.5 39.8 191 52-248 54-254 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 1.2E-34 2.7E-39 304.8 33.3 196 54-263 6-204 (438)
3 TIGR01677 pln_FAD_oxido plant- 100.0 4.7E-33 1E-37 298.6 32.6 182 54-239 23-215 (557)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 7.5E-33 1.6E-37 291.0 32.0 175 54-239 3-179 (419)
5 COG0277 GlcD FAD/FMN-containin 100.0 1.3E-32 2.7E-37 294.6 30.0 186 59-249 28-220 (459)
6 PLN02805 D-lactate dehydrogena 100.0 4.5E-33 9.7E-38 299.4 23.0 192 61-258 132-330 (555)
7 PRK11230 glycolate oxidase sub 100.0 1.5E-32 3.3E-37 293.7 24.2 197 58-258 51-253 (499)
8 TIGR01676 GLDHase galactonolac 100.0 1.2E-32 2.6E-37 291.4 22.9 196 54-263 53-251 (541)
9 TIGR00387 glcD glycolate oxida 100.0 1.1E-30 2.4E-35 274.9 19.2 190 66-259 1-197 (413)
10 PRK11282 glcE glycolate oxidas 100.0 6.8E-30 1.5E-34 260.0 19.3 170 71-247 3-181 (352)
11 PLN02465 L-galactono-1,4-lacto 100.0 5.8E-29 1.3E-33 265.5 23.7 177 54-239 88-267 (573)
12 KOG1231 Proteins containing th 100.0 1.8E-28 4E-33 245.1 23.6 175 58-237 59-240 (505)
13 PF01565 FAD_binding_4: FAD bi 99.9 6.2E-27 1.3E-31 209.7 12.8 136 63-202 1-137 (139)
14 KOG4730 D-arabinono-1, 4-lacto 99.9 3.5E-24 7.5E-29 214.6 24.5 183 55-245 42-227 (518)
15 PRK11183 D-lactate dehydrogena 99.9 6E-24 1.3E-28 221.9 17.9 196 60-259 36-289 (564)
16 PRK13905 murB UDP-N-acetylenol 99.9 7.6E-24 1.6E-28 213.1 17.6 162 60-236 28-193 (298)
17 KOG1232 Proteins containing th 99.9 2.6E-22 5.6E-27 196.4 11.8 187 50-240 77-270 (511)
18 PRK12436 UDP-N-acetylenolpyruv 99.9 1.9E-21 4.1E-26 195.4 14.5 162 59-235 33-197 (305)
19 PRK13903 murB UDP-N-acetylenol 99.9 3.1E-21 6.7E-26 196.8 15.7 165 59-236 29-197 (363)
20 KOG1233 Alkyl-dihydroxyacetone 99.9 5.2E-21 1.1E-25 187.5 15.0 193 55-248 153-352 (613)
21 PRK14652 UDP-N-acetylenolpyruv 99.8 6.6E-21 1.4E-25 191.1 14.0 163 59-236 32-196 (302)
22 TIGR00179 murB UDP-N-acetyleno 99.8 7.2E-21 1.6E-25 189.6 13.6 162 60-234 10-174 (284)
23 PRK13906 murB UDP-N-acetylenol 99.8 1.3E-20 2.9E-25 189.3 14.6 160 61-234 35-196 (307)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 6.1E-19 1.3E-23 176.5 17.5 164 60-235 18-192 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 3.7E-17 7.9E-22 163.1 13.6 159 60-235 31-193 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 3.9E-16 8.5E-21 152.7 14.8 165 59-235 17-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 4.8E-16 1E-20 154.6 13.8 163 60-236 30-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 4.9E-16 1.1E-20 156.8 13.0 162 60-235 18-188 (334)
29 PF08031 BBE: Berberine and be 99.7 7.2E-17 1.6E-21 115.4 3.7 47 456-513 1-47 (47)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 3.7E-15 8.1E-20 150.2 14.1 166 60-236 27-237 (354)
31 KOG1262 FAD-binding protein DI 99.6 3.7E-15 8E-20 147.0 6.9 168 71-240 62-233 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.5 3.5E-13 7.6E-18 132.3 12.5 148 62-235 20-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.2 1.1E-10 2.3E-15 113.7 11.2 143 61-236 17-160 (257)
34 PLN00107 FAD-dependent oxidore 95.2 0.043 9.3E-07 53.3 6.1 59 433-509 138-197 (257)
35 PF00941 FAD_binding_5: FAD bi 95.0 0.031 6.6E-07 51.7 4.4 106 63-173 2-116 (171)
36 PRK09799 putative oxidoreducta 94.7 0.1 2.3E-06 51.5 7.6 140 65-231 4-155 (258)
37 PRK09971 xanthine dehydrogenas 93.6 0.15 3.3E-06 51.3 6.5 152 65-234 6-175 (291)
38 TIGR03312 Se_sel_red_FAD proba 93.3 0.28 6.1E-06 48.4 7.6 139 66-231 4-154 (257)
39 PF09265 Cytokin-bind: Cytokin 91.9 0.082 1.8E-06 52.5 1.7 33 479-512 248-280 (281)
40 TIGR02963 xanthine_xdhA xanthi 91.8 0.48 1E-05 50.9 7.6 152 63-232 192-358 (467)
41 TIGR03195 4hydrxCoA_B 4-hydrox 89.6 0.59 1.3E-05 47.6 5.5 102 64-171 5-116 (321)
42 PF04030 ALO: D-arabinono-1,4- 89.1 0.34 7.5E-06 47.8 3.4 27 480-508 227-253 (259)
43 TIGR03199 pucC xanthine dehydr 87.7 0.77 1.7E-05 45.6 4.8 97 69-172 1-109 (264)
44 PF02913 FAD-oxidase_C: FAD li 85.2 1.2 2.5E-05 43.0 4.5 27 481-507 217-244 (248)
45 PF03614 Flag1_repress: Repres 82.8 3.8 8.2E-05 36.3 6.0 42 65-106 8-50 (165)
46 PLN02906 xanthine dehydrogenas 82.1 2.6 5.6E-05 51.3 6.5 81 63-148 228-309 (1319)
47 PLN00192 aldehyde oxidase 82.0 3.8 8.2E-05 50.0 7.9 107 63-172 233-352 (1344)
48 COG4630 XdhA Xanthine dehydrog 79.6 4.9 0.00011 41.2 6.5 140 63-215 203-352 (493)
49 TIGR02969 mam_aldehyde_ox alde 77.1 5.9 0.00013 48.3 7.4 78 64-147 237-316 (1330)
50 COG1319 CoxM Aerobic-type carb 72.9 12 0.00027 37.4 7.2 76 63-144 3-81 (284)
51 PLN02805 D-lactate dehydrogena 60.6 13 0.00027 41.1 5.0 30 480-509 516-546 (555)
52 PRK11230 glycolate oxidase sub 59.0 16 0.00035 39.7 5.5 33 480-512 439-472 (499)
53 TIGR00387 glcD glycolate oxida 58.3 6.7 0.00015 41.5 2.4 28 480-507 382-410 (413)
54 COG0351 ThiD Hydroxymethylpyri 57.3 28 0.00061 34.3 6.3 105 15-151 119-226 (263)
55 TIGR00178 monomer_idh isocitra 49.9 79 0.0017 34.7 8.5 134 72-215 312-460 (741)
56 COG4981 Enoyl reductase domain 47.0 51 0.0011 35.7 6.5 78 16-101 112-197 (717)
57 PRK11282 glcE glycolate oxidas 44.3 15 0.00032 38.1 2.1 21 487-507 323-344 (352)
58 KOG3282 Uncharacterized conser 41.8 33 0.00072 31.7 3.7 36 54-91 118-153 (190)
59 PLN02465 L-galactono-1,4-lacto 40.6 1.3E+02 0.0027 33.5 8.7 28 479-509 537-564 (573)
60 COG4359 Uncharacterized conser 39.7 30 0.00065 32.2 3.1 25 75-99 78-102 (220)
61 PF02601 Exonuc_VII_L: Exonucl 32.9 25 0.00055 35.7 1.8 55 35-96 21-87 (319)
62 cd06568 GH20_SpHex_like A subg 32.8 48 0.001 34.0 3.8 28 70-97 72-101 (329)
63 cd02429 PTH2_like Peptidyl-tRN 32.4 87 0.0019 26.9 4.7 35 54-92 51-85 (116)
64 COG1519 KdtA 3-deoxy-D-manno-o 30.9 3.3E+02 0.0071 28.9 9.4 34 62-95 260-293 (419)
65 PRK04322 peptidyl-tRNA hydrola 28.2 1.3E+02 0.0027 25.7 5.0 37 61-97 46-83 (113)
66 cd07033 TPP_PYR_DXS_TK_like Py 27.9 82 0.0018 28.2 4.1 30 64-93 125-154 (156)
67 PRK00286 xseA exodeoxyribonucl 27.8 65 0.0014 34.4 3.9 55 35-96 142-204 (438)
68 cd02742 GH20_hexosaminidase Be 26.9 60 0.0013 32.8 3.3 29 69-97 68-98 (303)
69 TIGR01676 GLDHase galactonolac 26.6 39 0.00085 37.1 2.0 26 481-509 509-534 (541)
70 PF01981 PTH2: Peptidyl-tRNA h 25.9 1.4E+02 0.003 25.4 4.9 37 61-97 49-86 (116)
71 PF02779 Transket_pyr: Transke 25.5 1.1E+02 0.0023 28.2 4.4 32 64-95 139-172 (178)
72 COG1154 Dxs Deoxyxylulose-5-ph 25.1 5.1E+02 0.011 28.9 9.9 77 62-145 440-519 (627)
73 cd06570 GH20_chitobiase-like_1 24.9 69 0.0015 32.6 3.3 28 70-97 65-94 (311)
74 cd06565 GH20_GcnA-like Glycosy 24.7 69 0.0015 32.3 3.2 29 69-97 56-86 (301)
75 PF00728 Glyco_hydro_20: Glyco 24.5 59 0.0013 33.3 2.8 29 69-97 69-99 (351)
76 COG2144 Selenophosphate synthe 24.4 1.6E+02 0.0035 29.6 5.5 52 30-94 238-290 (324)
77 TIGR00283 arch_pth2 peptidyl-t 23.9 1.7E+02 0.0036 25.1 5.0 38 60-97 47-85 (115)
78 cd06563 GH20_chitobiase-like T 23.7 73 0.0016 33.0 3.3 27 71-97 84-112 (357)
79 cd06562 GH20_HexA_HexB-like Be 23.3 75 0.0016 32.8 3.3 28 71-98 68-97 (348)
80 KOG2499 Beta-N-acetylhexosamin 23.1 70 0.0015 34.2 2.9 28 70-97 247-276 (542)
81 cd02407 PTH2_family Peptidyl-t 22.3 1.9E+02 0.0041 24.7 5.0 37 60-96 47-84 (115)
82 cd06564 GH20_DspB_LnbB-like Gl 21.8 74 0.0016 32.5 2.9 27 71-97 80-108 (326)
83 PF10740 DUF2529: Protein of u 20.7 2.4E+02 0.0052 26.0 5.5 68 63-136 84-153 (172)
84 cd06569 GH20_Sm-chitobiase-lik 20.5 91 0.002 33.4 3.3 28 71-98 95-124 (445)
85 cd02430 PTH2 Peptidyl-tRNA hyd 20.1 2.2E+02 0.0048 24.3 4.9 36 61-96 48-84 (115)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.1e-38 Score=335.53 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=171.2
Q ss_pred ccccCCCCCCCceEEEecCCHHHHHHHHHHHH--hCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCc-------e
Q 043814 52 NLRYLVPSMPKPEFIFTPLNESHVRAAVICSR--DLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRS-------I 122 (524)
Q Consensus 52 n~r~~~~~~~~P~~vv~p~s~edv~~~v~~a~--~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~-------i 122 (524)
...|+......|.+|++|+|++||+++|++|+ +++++|.+||+|||+.|.+...+ +++|||++||+ +
T Consensus 54 s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~----GivIdms~Ln~i~~~~~ii 129 (525)
T PLN02441 54 SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG----GVVVDMRSLRGGVRGPPVI 129 (525)
T ss_pred hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC----eEEEECCCCCCcCccCceE
Confidence 34688888889999999999999999999997 67999999999999998887655 89999999999 3
Q ss_pred EEeCCCCeEEEeCCCCHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe
Q 043814 123 EVDINDNTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD 202 (524)
Q Consensus 123 ~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~ 202 (524)
++|.+..+|+|++|++|.++.+++.++|+. +...+.+..+++||.+++||+|..+.+||..+|+|++++||++||++++
T Consensus 130 ~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~ 208 (525)
T PLN02441 130 VVSGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVT 208 (525)
T ss_pred EEcCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEE
Confidence 788899999999999999999999999842 2234666789999999999999999999999999999999999999998
Q ss_pred -ccCCCchhhhhhhccCCCcceEEEEEEEEEEecCceEEEEEEEecc
Q 043814 203 -REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTL 248 (524)
Q Consensus 203 -~~~~~~dlf~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~ 248 (524)
++.+|+|||||++||+ |+|||||++|||++|+|+...++.+.+..
T Consensus 209 ~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 209 CSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred eCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 6778999999999998 99999999999999999977777776654
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.2e-34 Score=304.76 Aligned_cols=196 Identities=24% Similarity=0.380 Sum_probs=171.2
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEE
Q 043814 54 RYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAW 132 (524)
Q Consensus 54 r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~ 132 (524)
+|+.+....|.+|+.|+|+|||+++|++|++++++|+++|+|||+.+.... + +++|||++||+| ++|+++++|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~----gvvIdl~~l~~i~~id~~~~~vt 80 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D----GFLIHLDKMNKVLQFDKEKKQIT 80 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C----eEEEEhhhcCCceEEcCCCCEEE
Confidence 488888899999999999999999999999999999999999999876543 3 799999999997 9999999999
Q ss_pred EeCCCCHHHHHHHHHHhCCCceEe-cCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe-ccCCCchh
Q 043814 133 VQAGATIGELYYRIAEKSNTQGFT-AGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDL 210 (524)
Q Consensus 133 v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~-~~~~~~dl 210 (524)
|+||+++.+|.+.|.++|+ .++ .|.++.++|||++++|+||. +.+||..+|+|++++||++||++++ ++.+++||
T Consensus 81 V~aG~~l~~L~~~L~~~Gl--~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dl 157 (438)
T TIGR01678 81 VEAGIRLYQLHEQLDEHGY--SMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADV 157 (438)
T ss_pred EcCCCCHHHHHHHHHHcCC--EecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhH
Confidence 9999999999999999985 444 58889999999999999997 6899999999999999999999997 66678999
Q ss_pred hhhhhccCCCcceEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHHHHHH
Q 043814 211 FWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVA 263 (524)
Q Consensus 211 f~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
||+.+||. |+|||||++|||++|........ . .....++++.|++..
T Consensus 158 f~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~---~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 158 FQAARVSL-GCLGIIVTVTIQVVPQFHLQETS--F---VSTLKELLDNWDSHW 204 (438)
T ss_pred HHHHhcCC-CceEeeEEEEEEEEeccceEEEE--e---cCCHHHHHHHHHHHh
Confidence 99999998 99999999999999987544322 1 122355676776654
No 3
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=4.7e-33 Score=298.55 Aligned_cols=182 Identities=18% Similarity=0.205 Sum_probs=160.2
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEe-CCcCCCCCccccCCCCCeEEEEcCCCCc-eEEeCCCCeE
Q 043814 54 RYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRS-GGHDYEGLSYVSQIETPFFLLDLAKLRS-IEVDINDNTA 131 (524)
Q Consensus 54 r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~g-gGh~~~g~~~~~~~~~~~vvIdl~~~~~-i~~d~~~~~v 131 (524)
+|+.++...|.+|++|+|+|||+++|++|+++++||+++| +||++.+.+...+ .+++++|||++||+ +++|.++++|
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~-~~ggvvIdL~~Ln~il~iD~~~~tV 101 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDG-SDGALLISTKRLNHVVAVDATAMTV 101 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCC-CCCEEEEEcccCCCCEEEeCCCCEE
Confidence 5999999999999999999999999999999999999996 6999876554431 01369999999999 6999999999
Q ss_pred EEeCCCCHHHHHHHHHHhCCCceEec-CCCCCccccccccCCCCCCCc-cccCCcccceeEEEEEccCC------cEEe-
Q 043814 132 WVQAGATIGELYYRIAEKSNTQGFTA-GLCPSVGSGGHITGGGYGTMM-RKYGLGADNVVDARIVDASG------RILD- 202 (524)
Q Consensus 132 ~v~~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~G~~~-~~~G~~~d~v~~~~vv~~~G------~v~~- 202 (524)
+|+||+++.+|.+.|.++|+ .++. +....++|||++++|+||... +.||.++|+|++++||++|| ++++
T Consensus 102 tV~AG~~l~~L~~~L~~~Gl--al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~ 179 (557)
T TIGR01677 102 TVESGMSLRELIVEAEKAGL--ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRIL 179 (557)
T ss_pred EECCCCcHHHHHHHHHHcCC--EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEe
Confidence 99999999999999999984 4454 455678999999999999866 58999999999999999998 7776
Q ss_pred ccCCCchhhhhhhccCCCcceEEEEEEEEEEecCceE
Q 043814 203 REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATV 239 (524)
Q Consensus 203 ~~~~~~dlf~a~rg~~~g~~GIvt~~tlk~~p~~~~~ 239 (524)
+..+|+|||||+|||+ |+|||||++|||++|.+...
T Consensus 180 s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 180 SEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred CCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccce
Confidence 6667899999999998 99999999999999987633
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=7.5e-33 Score=291.02 Aligned_cols=175 Identities=22% Similarity=0.337 Sum_probs=156.0
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEE
Q 043814 54 RYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAW 132 (524)
Q Consensus 54 r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~ 132 (524)
+|+.++...|.+|++|+|++||+++|++|++ +|+++|+|||+.+.+.. + +++|||++||+| ++|+++++|+
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~----g~~idl~~l~~i~~~d~~~~~v~ 74 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D----GTMISLTGLQGVVDVDQPTGLAT 74 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C----CEEEEhhHcCCceeecCCCCEEE
Confidence 4888888899999999999999999999974 79999999999876542 3 699999999997 9999999999
Q ss_pred EeCCCCHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe-ccCCCchhh
Q 043814 133 VQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDLF 211 (524)
Q Consensus 133 v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~-~~~~~~dlf 211 (524)
||||+++.+|.+.|.++|+.++. .|.+..++|||.+++|+||. +..||..+|+|++++||++||++++ ++.+|+|||
T Consensus 75 v~aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf 152 (419)
T TIGR01679 75 VEAGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMY 152 (419)
T ss_pred EcCCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHH
Confidence 99999999999999999964432 35556688999999999997 4689999999999999999999997 666789999
Q ss_pred hhhhccCCCcceEEEEEEEEEEecCceE
Q 043814 212 WAIRGGGGGSFGIILAWKVKLVPVPATV 239 (524)
Q Consensus 212 ~a~rg~~~g~~GIvt~~tlk~~p~~~~~ 239 (524)
||+|||+ |+|||||++|||++|++...
T Consensus 153 ~a~~g~~-G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 153 LAARVSL-GALGVISQVTLQTVALFRLR 179 (419)
T ss_pred HHHHhCC-CceEEEEEEEEEeecceEeE
Confidence 9999998 99999999999999987644
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.3e-32 Score=294.59 Aligned_cols=186 Identities=30% Similarity=0.370 Sum_probs=165.2
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCC
Q 043814 59 SMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGA 137 (524)
Q Consensus 59 ~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~ 137 (524)
....|.+|+.|+|++||+++|++|+++++||++||+|||+.|.+.+.+ +++|||++||+| ++|+++++|+|+||+
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~----gvvl~l~~mn~i~~id~~~~~~~v~aGv 103 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG----GVVLDLSRLNRILEIDPEDGTATVQAGV 103 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC----cEEEEchhhcchhccCcCCCEEEEcCCc
Confidence 446899999999999999999999999999999999999998887663 799999999998 799999999999999
Q ss_pred CHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe--c----cCCCchhh
Q 043814 138 TIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD--R----EAMGEDLF 211 (524)
Q Consensus 138 ~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~--~----~~~~~dlf 211 (524)
++.+|.++|.++|+.+++.+++..+++|||++++|++|..+.+||.++|+|+++++|++||++++ . +..+.||+
T Consensus 104 ~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 104 TLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred cHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 99999999999986554445555689999999999999999999999999999999999999996 1 24558999
Q ss_pred hhhhccCCCcceEEEEEEEEEEecCceEEEEEEEecch
Q 043814 212 WAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLE 249 (524)
Q Consensus 212 ~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~~ 249 (524)
+++.||. |+|||||++|||++|.|+........+...
T Consensus 184 ~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~~ 220 (459)
T COG0277 184 ALFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPSI 220 (459)
T ss_pred HhcccCC-ccceEEEEEEEEeccCCchheEEEEeCCCH
Confidence 9999988 999999999999999988766655555443
No 6
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=4.5e-33 Score=299.36 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=170.1
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCH
Q 043814 61 PKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATI 139 (524)
Q Consensus 61 ~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~ 139 (524)
..|.+|++|+|++||+++|++|+++++|+++||||||+.|.+...+ ++++|||++||+| ++|.++.+|+||||+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~---ggivIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH---GGVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC---CEEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 4699999999999999999999999999999999999998876543 5899999999997 79999999999999999
Q ss_pred HHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe--cc----CCCchhhhh
Q 043814 140 GELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD--RE----AMGEDLFWA 213 (524)
Q Consensus 140 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~--~~----~~~~dlf~a 213 (524)
.+|.++|.++| +.++...++.++|||+++++++|..+.+||.++|+|++++||++||++++ .. ..++||+|+
T Consensus 209 ~~L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l 286 (555)
T PLN02805 209 LELNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRL 286 (555)
T ss_pred HHHHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHH
Confidence 99999999998 55676666778999999999999999999999999999999999999995 11 246899999
Q ss_pred hhccCCCcceEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHH
Q 043814 214 IRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYK 258 (524)
Q Consensus 214 ~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
++|+. |+|||||+++||++|.|+......+.|+..+++.+++..
T Consensus 287 ~~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 287 VIGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred hccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 99998 999999999999999998877777777654555555443
No 7
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.5e-32 Score=293.73 Aligned_cols=197 Identities=22% Similarity=0.277 Sum_probs=170.1
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCC
Q 043814 58 PSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAG 136 (524)
Q Consensus 58 ~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G 136 (524)
..+..|.+|++|+|++||+++|++|+++++||++||+||++.|.+.+.. ++++|||++||+| ++|+++++|+||||
T Consensus 51 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~---~gividl~~ln~I~~id~~~~~v~VeaG 127 (499)
T PRK11230 51 AYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE---KGVLLVMARFNRILDINPVGRRARVQPG 127 (499)
T ss_pred ccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC---CcEEEEcccCCCceEEcCCCCEEEEcCC
Confidence 3456899999999999999999999999999999999999987766543 4899999999997 99999999999999
Q ss_pred CCHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEecc-----CCCchhh
Q 043814 137 ATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDRE-----AMGEDLF 211 (524)
Q Consensus 137 ~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~~~-----~~~~dlf 211 (524)
+++.+|.++|.++|+.++..+++...++|||++++++.|+.+.+||.+.|+|++++||++||++++.. ..++||+
T Consensus 128 v~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~ 207 (499)
T PRK11230 128 VRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLL 207 (499)
T ss_pred ccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchH
Confidence 99999999999998643333455667899999999999999999999999999999999999999721 3478999
Q ss_pred hhhhccCCCcceEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHH
Q 043814 212 WAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYK 258 (524)
Q Consensus 212 ~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
|+++|+. |+|||||++|||++|.|+....+.+.|...+++.+++..
T Consensus 208 ~l~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 208 ALFTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred hhhccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 9999998 999999999999999998777766666544444444443
No 8
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.2e-32 Score=291.41 Aligned_cols=196 Identities=18% Similarity=0.219 Sum_probs=171.1
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEE
Q 043814 54 RYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAW 132 (524)
Q Consensus 54 r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~ 132 (524)
+|+.++...|..+++|+|+|||+++|++|++++++|+++|+|||+.+.+...+ .+|||++||+| ++|.++++|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~g-----~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSRA-----GMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCCC-----eEEEhhhCCCCEEEcCCCCEEE
Confidence 59999999999999999999999999999999999999999999998877654 57999999996 9999999999
Q ss_pred EeCCCCHHHHHHHHHHhCCCceEe-cCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe-ccCCCchh
Q 043814 133 VQAGATIGELYYRIAEKSNTQGFT-AGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDL 210 (524)
Q Consensus 133 v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~-~~~~~~dl 210 (524)
|+||+++.+|.+.|.++|+ .++ .|.+..++|||++++|+||.. .+||.++|+|++++||++||++++ +..+++||
T Consensus 128 V~AG~~l~~L~~~L~~~Gl--al~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdL 204 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYGI--TLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPEL 204 (541)
T ss_pred EcCCCCHHHHHHHHHHcCC--EeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHH
Confidence 9999999999999999985 444 488899999999999999985 479999999999999999999997 66678999
Q ss_pred hhhhhccCCCcceEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHHHHHH
Q 043814 211 FWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKWQQVA 263 (524)
Q Consensus 211 f~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
|||+|||. |+|||||++|||+.|.+..... ....+ ..++++.|.++.
T Consensus 205 F~Aargsl-G~LGVItevTLr~~Pa~~l~~~-~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 205 FFLARCGL-GGLGVVAEVTLQCVERQELVEH-TFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHHHhcCC-CceEeEEEEEEEEEeccceeEE-EEecC----HHHHHHHHHHHH
Confidence 99999998 9999999999999999875322 11122 345566666654
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=1.1e-30 Score=274.86 Aligned_cols=190 Identities=26% Similarity=0.299 Sum_probs=164.4
Q ss_pred EEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHHHHH
Q 043814 66 IFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGELYY 144 (524)
Q Consensus 66 vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 144 (524)
|++|+|+|||+++|++|+++++|++++|+|||+.|.+.+.+ ++++|||++||+| ++|+++.+++||||+++.+|.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~---~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~ 77 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE---GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQ 77 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC---CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHH
Confidence 57899999999999999999999999999999987766543 4899999999997 9999999999999999999999
Q ss_pred HHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEec------cCCCchhhhhhhccC
Q 043814 145 RIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDR------EAMGEDLFWAIRGGG 218 (524)
Q Consensus 145 ~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~~------~~~~~dlf~a~rg~~ 218 (524)
+|.++|+.+++.+++....++||++++++.|..+.+||.++|+|++++||++||++++. ...++||+|.++|+.
T Consensus 78 ~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~ 157 (413)
T TIGR00387 78 AVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE 157 (413)
T ss_pred HHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC
Confidence 99999854433455556788999999999999999999999999999999999999962 234689999999998
Q ss_pred CCcceEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHH
Q 043814 219 GGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATKILYKW 259 (524)
Q Consensus 219 ~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
|+|||||+++||++|.|+....+.+.|...+++.+++..+
T Consensus 158 -GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 158 -GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred -ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 9999999999999999998777666666555555554443
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=6.8e-30 Score=260.00 Aligned_cols=170 Identities=24% Similarity=0.300 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCc-CCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHHHHHHHHH
Q 043814 71 NESHVRAAVICSRDLRIHLRIRSGGH-DYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGELYYRIAE 148 (524)
Q Consensus 71 s~edv~~~v~~a~~~~~~v~~~ggGh-~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~ 148 (524)
.++||+++|++|+++++||+++|||| ++.+.. .+ +++|||++||+| ++|+++.+|+|++|+++.+|.+.|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~----~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LA----GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CC----CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHH
Confidence 47999999999999999999999997 555553 23 579999999997 99999999999999999999999999
Q ss_pred hCCCceEecC-CCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEec------cCCCchhhhhhhccCCCc
Q 043814 149 KSNTQGFTAG-LCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDR------EAMGEDLFWAIRGGGGGS 221 (524)
Q Consensus 149 ~g~~l~~~~g-~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~~------~~~~~dlf~a~rg~~~g~ 221 (524)
+|+.+++.++ .+...+|||++++|++|+.+.+||..+|+|++++||++||++++. +..++||||+++||. |+
T Consensus 77 ~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-Gt 155 (352)
T PRK11282 77 AGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GT 155 (352)
T ss_pred cCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-ch
Confidence 9865555343 444689999999999999999999999999999999999999962 235789999999998 99
Q ss_pred ceEEEEEEEEEEecCceEEEEEEEec
Q 043814 222 FGIILAWKVKLVPVPATVTVFTVSKT 247 (524)
Q Consensus 222 ~GIvt~~tlk~~p~~~~~~~~~~~~~ 247 (524)
|||||++|||++|.|+....+.+.++
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEecC
Confidence 99999999999999987655555443
No 11
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=5.8e-29 Score=265.49 Aligned_cols=177 Identities=20% Similarity=0.262 Sum_probs=160.4
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEE
Q 043814 54 RYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAW 132 (524)
Q Consensus 54 r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~ 132 (524)
+|+.+....|.+++.|+|++||+++|++|++++++|+++|+|||+.+.....+ .+|||++|++| ++|.++++|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~-----glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE-----GMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC-----EEEECcCCCCcEEEeCCCCEEE
Confidence 69999999999999999999999999999999999999999999988776554 56899999996 9999999999
Q ss_pred EeCCCCHHHHHHHHHHhCCCceEec-CCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe-ccCCCchh
Q 043814 133 VQAGATIGELYYRIAEKSNTQGFTA-GLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDL 210 (524)
Q Consensus 133 v~~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~-~~~~~~dl 210 (524)
|++|+++.+|.+.|.++|+. ++. |.....+|||++++|+||... .+|..+|+|++++||+++|++++ +..+++||
T Consensus 163 V~AG~~l~~L~~~L~~~GLa--l~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdL 239 (573)
T PLN02465 163 VQAGARVQQVVEALRPHGLT--LQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPEL 239 (573)
T ss_pred EccCCCHHHHHHHHHHcCCE--eccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHH
Confidence 99999999999999999854 443 666778999999999999854 68999999999999999999997 66678999
Q ss_pred hhhhhccCCCcceEEEEEEEEEEecCceE
Q 043814 211 FWAIRGGGGGSFGIILAWKVKLVPVPATV 239 (524)
Q Consensus 211 f~a~rg~~~g~~GIvt~~tlk~~p~~~~~ 239 (524)
||+.|+|. |.|||||++|||+.|.++..
T Consensus 240 F~aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 240 FRLARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred HhHhhccC-CCCcEEEEEEEEEEecCceE
Confidence 99999998 89999999999999998743
No 12
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.96 E-value=1.8e-28 Score=245.11 Aligned_cols=175 Identities=23% Similarity=0.376 Sum_probs=151.4
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHhC--CCeEEEEeCCcCCCCCccccCCCCCeEEEEcC---CCCce-EEeCCCCeE
Q 043814 58 PSMPKPEFIFTPLNESHVRAAVICSRDL--RIHLRIRSGGHDYEGLSYVSQIETPFFLLDLA---KLRSI-EVDINDNTA 131 (524)
Q Consensus 58 ~~~~~P~~vv~p~s~edv~~~v~~a~~~--~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~---~~~~i-~~d~~~~~v 131 (524)
..+..|.+|+.|+|+|||++++|.|+.. ++||.+||+|||..|.+.... +|++|.|. .|+++ .+..++..|
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~---~GvvV~m~~~~~~~~~~~~~~~~~yv 135 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR---GGVVVCMDSSLLMKDVPVLVVDDLYV 135 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC---CCeEEEEehhhccCCCceeecccceE
Confidence 4456899999999999999999999999 899999999999999988733 48666553 45665 456677999
Q ss_pred EEeCCCCHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe-ccCCCchh
Q 043814 132 WVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDL 210 (524)
Q Consensus 132 ~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~-~~~~~~dl 210 (524)
.|+||..|-+|.+++.++|+. ++..-.....+|||.++.+|+|.+..+||...+||++++||+++|++++ ++..|++|
T Consensus 136 dV~~g~~Widll~~t~e~GL~-p~swtDyl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~l 214 (505)
T KOG1231|consen 136 DVSAGTLWIDLLDYTLEYGLS-PFSWTDYLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNL 214 (505)
T ss_pred EeeCChhHHHHHHHHHHcCCC-ccCcCCccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCcee
Confidence 999999999999999999852 1112222338899999999999999999999999999999999999997 77789999
Q ss_pred hhhhhccCCCcceEEEEEEEEEEecCc
Q 043814 211 FWAIRGGGGGSFGIILAWKVKLVPVPA 237 (524)
Q Consensus 211 f~a~rg~~~g~~GIvt~~tlk~~p~~~ 237 (524)
|+++.||. |.|||||+++++++|+|.
T Consensus 215 f~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 215 FFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeccC-cceeeEEEEEEEeccCCc
Confidence 99999998 999999999999999993
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=6.2e-27 Score=209.71 Aligned_cols=136 Identities=32% Similarity=0.507 Sum_probs=124.9
Q ss_pred ceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCc-eEEeCCCCeEEEeCCCCHHH
Q 043814 63 PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRS-IEVDINDNTAWVQAGATIGE 141 (524)
Q Consensus 63 P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~-i~~d~~~~~v~v~~G~~~~~ 141 (524)
|.+|++|++++||+++|++|+++++|++++|+||++.+.+... ++++|||++|++ +++|++.++++|++|+++.|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~----~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE----GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST----TEEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC----CcEEEeeccccccccccccceeEEEeccccchh
Confidence 8899999999999999999999999999999999999776633 489999999999 69999999999999999999
Q ss_pred HHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe
Q 043814 142 LYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD 202 (524)
Q Consensus 142 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~ 202 (524)
|.++|.++|+.+.+.++.+..+++||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 9999999985444447888889999999999999999999999999999999999999985
No 14
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.93 E-value=3.5e-24 Score=214.61 Aligned_cols=183 Identities=22% Similarity=0.269 Sum_probs=159.2
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEE
Q 043814 55 YLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWV 133 (524)
Q Consensus 55 ~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v 133 (524)
|.++..++...|-+|+|++||.++|+.|++++.++++.|.|||..+....+ +.+|++.+||++ ++|++..++||
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd-----g~lisl~~lnkVv~~dpe~~tvTV 116 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD-----GLLISLDKLNKVVEFDPELKTVTV 116 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc-----ccEEEhhhhccceeeCchhceEEe
Confidence 445555667778889999999999999999999999999999999887765 599999999995 89999999999
Q ss_pred eCCCCHHHHHHHHHHhCCCceEe-cCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe-ccCCCchhh
Q 043814 134 QAGATIGELYYRIAEKSNTQGFT-AGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDLF 211 (524)
Q Consensus 134 ~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~-~~~~~~dlf 211 (524)
++|+++.||++++.+.|+ .++ .+.-..++|||.+..|+||..-..|+.....++...++.++|.++. +++..||+|
T Consensus 117 ~aGirlrQLie~~~~~Gl--sL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F 194 (518)
T KOG4730|consen 117 QAGIRLRQLIEELAKLGL--SLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELF 194 (518)
T ss_pred ccCcCHHHHHHHHHhcCc--cccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHH
Confidence 999999999999999885 444 3666778999999999999877778888777888888889998776 777789999
Q ss_pred hhhhccCCCcceEEEEEEEEEEecCceEEEEEEE
Q 043814 212 WAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVS 245 (524)
Q Consensus 212 ~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~ 245 (524)
.|.+.|. |-+|||.++||++.|.-+...++.++
T Consensus 195 ~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 195 NAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred hhhhhcc-cceeEEEEEEEEEEecceeeeEEEEe
Confidence 9999999 89999999999999987766555543
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=6e-24 Score=221.90 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=161.2
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCC--CCCeEEEEcCCCCce-EEeCCCCeEEEeCC
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQI--ETPFFLLDLAKLRSI-EVDINDNTAWVQAG 136 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~--~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G 136 (524)
...|.+||+|.|++||+++|++|+++++||++||||+++.|.+.+.+. .+++|||||.+||+| +|| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988887531 024899999999997 688 5678999999
Q ss_pred CCHHHHHHHHHHhCCCceEecCC-CCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcE-------Ee--c---
Q 043814 137 ATIGELYYRIAEKSNTQGFTAGL-CPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRI-------LD--R--- 203 (524)
Q Consensus 137 ~~~~~l~~~l~~~g~~l~~~~g~-~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v-------~~--~--- 203 (524)
+++.+|.++|.++|+......|+ |-.++|||.++.++-|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999998532111223 3345788999999999999999999999999 999999999 32 1
Q ss_pred ------cCCCc----------------------------------hhhhhh--hccCCCcceEEEEEEEEEEecCceEEE
Q 043814 204 ------EAMGE----------------------------------DLFWAI--RGGGGGSFGIILAWKVKLVPVPATVTV 241 (524)
Q Consensus 204 ------~~~~~----------------------------------dlf~a~--rg~~~g~~GIvt~~tlk~~p~~~~~~~ 241 (524)
+..+. |+...+ .|+. |.+||| +++|+++|+|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 11233 787777 8887 999999 999999999999888
Q ss_pred EEEEecchhhHHHHHHHH
Q 043814 242 FTVSKTLEQGATKILYKW 259 (524)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (524)
|.+.++..+.+.++...+
T Consensus 272 f~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHI 289 (564)
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 888887666666655444
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=7.6e-24 Score=213.05 Aligned_cols=162 Identities=22% Similarity=0.225 Sum_probs=135.5
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCC-CCceEEeCCCCeEEEeCCCC
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAK-LRSIEVDINDNTAWVQAGAT 138 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~-~~~i~~d~~~~~v~v~~G~~ 138 (524)
...|.+++.|+|++||+++|++|+++++|+.++|+|||+...+.+.+ +++|||++ |+.|++ ++.+++|+||++
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~----gvvI~l~~~l~~i~~--~~~~v~v~aG~~ 101 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR----GVVIRLGKGLNEIEV--EGNRITAGAGAP 101 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc----eEEEEecCCcceEEe--cCCEEEEECCCc
Confidence 35799999999999999999999999999999999999875544333 89999998 998855 457899999999
Q ss_pred HHHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccC-CcccceeEEEEEccCCcEEeccCCCchhhhhhhc
Q 043814 139 IGELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYG-LGADNVVDARIVDASGRILDREAMGEDLFWAIRG 216 (524)
Q Consensus 139 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G-~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg 216 (524)
+.+|.+++.++|+ ++++..|.++++ ||+++++.+.|| .++|+|+++++|++||++++.. +.|++|++|+
T Consensus 102 ~~~L~~~l~~~Gl~gle~~~gipGTV-------GGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~ 172 (298)
T PRK13905 102 LIKLARFAAEAGLSGLEFAAGIPGTV-------GGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRH 172 (298)
T ss_pred HHHHHHHHHHcCCCcchhccCCCcch-------hHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcc
Confidence 9999999999996 455566665543 555566666676 6899999999999999999743 3599999999
Q ss_pred cCCC-cceEEEEEEEEEEecC
Q 043814 217 GGGG-SFGIILAWKVKLVPVP 236 (524)
Q Consensus 217 ~~~g-~~GIvt~~tlk~~p~~ 236 (524)
+..+ .+||||+++||++|..
T Consensus 173 s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 173 SALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred ccCCCCCEEEEEEEEEEcCCC
Confidence 8744 3899999999999863
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.87 E-value=2.6e-22 Score=196.43 Aligned_cols=187 Identities=20% Similarity=0.281 Sum_probs=171.0
Q ss_pred ccccccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCC
Q 043814 50 AQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDIND 128 (524)
Q Consensus 50 ~~n~r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~ 128 (524)
.+|.-|-..++.....|..|.|+++|++++++|+++++-|++.||-++..|.|.+.- +.|||+|.+||+| ++|+-.
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf---DEiVlsl~~mNKi~sfDevs 153 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF---DEIVLSLGLMNKILSFDEVS 153 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch---HHHhhhhhhhcccccccccc
Confidence 467788888889999999999999999999999999999999999999988887754 4799999999998 899999
Q ss_pred CeEEEeCCCCHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe------
Q 043814 129 NTAWVQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD------ 202 (524)
Q Consensus 129 ~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~------ 202 (524)
+++++++|+.+.++..+|+++|+.+++..|.-+++-|||.+++.+-|..--+||....+|+++|+|+|+|+|+.
T Consensus 154 Gil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slR 233 (511)
T KOG1232|consen 154 GILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLR 233 (511)
T ss_pred ceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhc
Confidence 99999999999999999999997666667999999999999999999999999999999999999999999995
Q ss_pred ccCCCchhhhhhhccCCCcceEEEEEEEEEEecCceEE
Q 043814 203 REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVT 240 (524)
Q Consensus 203 ~~~~~~dlf~a~rg~~~g~~GIvt~~tlk~~p~~~~~~ 240 (524)
.+..+.|+-..+.|+. |++||||.+++-+.|.|..+.
T Consensus 234 KDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn 270 (511)
T KOG1232|consen 234 KDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVN 270 (511)
T ss_pred ccCccccchhheecCC-ceeeEEeeEEEeecCCCccee
Confidence 3456789999999998 999999999999999987653
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=1.9e-21 Score=195.45 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=134.6
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCC
Q 043814 59 SMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGAT 138 (524)
Q Consensus 59 ~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~ 138 (524)
+...|.++++|+|++||++++++|+++++|+.++|+|||+...+.+.+ +++|+|++|++|+++ +.+++|++|+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~----GvvI~l~~l~~i~~~--~~~v~v~aG~~ 106 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR----GITVSLIHITGVTVT--GTTIVAQCGAA 106 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee----EEEEEeCCcCcEEEe--CCEEEEEeCCc
Confidence 445799999999999999999999999999999999999975444444 899999889999876 46899999999
Q ss_pred HHHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccC-CcccceeEEEEEccCCcEEeccCCCchhhhhhhc
Q 043814 139 IGELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYG-LGADNVVDARIVDASGRILDREAMGEDLFWAIRG 216 (524)
Q Consensus 139 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G-~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg 216 (524)
+.+|.+++.++|+ +++++.|.+++|| |+..++++.|| ...|.+.+++|+++||++++.. +.|+.|+||.
T Consensus 107 ~~~L~~~~~~~gl~Gle~~~giPGtVG-------Gav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~ 177 (305)
T PRK12436 107 IIDVSRIALDHNLTGLEFACGIPGSVG-------GALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRK 177 (305)
T ss_pred HHHHHHHHHHcCCccchhhcCCccchh-------HHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCC
Confidence 9999999999997 6777788887764 44444455566 5678889999999999999743 3699999998
Q ss_pred cCCC-cceEEEEEEEEEEec
Q 043814 217 GGGG-SFGIILAWKVKLVPV 235 (524)
Q Consensus 217 ~~~g-~~GIvt~~tlk~~p~ 235 (524)
+... ...||++++||+.+.
T Consensus 178 s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 178 SVFANNHYIILEARFELEEG 197 (305)
T ss_pred CcCCCCCEEEEEEEEEEcCC
Confidence 7532 357999999999874
No 19
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=3.1e-21 Score=196.75 Aligned_cols=165 Identities=19% Similarity=0.158 Sum_probs=143.2
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCC
Q 043814 59 SMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGAT 138 (524)
Q Consensus 59 ~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~ 138 (524)
+...+.+++.|+|++||++++++|+++++|+.++|+|||++..+.+.+ ++||+++ +++++++.+..+|+|++|+.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~----GvVI~l~-~~~i~i~~~~~~v~vgAG~~ 103 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD----GTVVRVA-TRGVTVDCGGGLVRAEAGAV 103 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc----EEEEEeC-CCcEEEeCCCCEEEEEcCCC
Confidence 345799999999999999999999999999999999999886555454 8999997 58888876667999999999
Q ss_pred HHHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccC-CcEEeccCCCchhhhhhhc
Q 043814 139 IGELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDAS-GRILDREAMGEDLFWAIRG 216 (524)
Q Consensus 139 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~-G~v~~~~~~~~dlf~a~rg 216 (524)
|.+|.+++.++|+ ++++..|.+++||.+..+.+|++|. .++|.|.++++++.+ |++++.. +.||+|+||+
T Consensus 104 ~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~------ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~ 175 (363)
T PRK13903 104 WDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQ------EVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRT 175 (363)
T ss_pred HHHHHHHHHHcCCccccccCCCCcchhhHhhcCCChhHH------HHhhhEeEEEEEECCCCEEEEEE--HHHcceeccc
Confidence 9999999999998 7889999999998888888888773 568999999999965 9998743 4699999998
Q ss_pred cCC--CcceEEEEEEEEEEecC
Q 043814 217 GGG--GSFGIILAWKVKLVPVP 236 (524)
Q Consensus 217 ~~~--g~~GIvt~~tlk~~p~~ 236 (524)
+.. ++++|||+++||++|..
T Consensus 176 S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 176 SVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cccCCCCCEEEEEEEEEEEcCC
Confidence 732 34789999999999863
No 20
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.86 E-value=5.2e-21 Score=187.53 Aligned_cols=193 Identities=21% Similarity=0.233 Sum_probs=163.3
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCC-CCccccCCCCCeEEEEcCCCCce-EEeCCCCeEE
Q 043814 55 YLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYE-GLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAW 132 (524)
Q Consensus 55 ~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~-g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~ 132 (524)
|...+...|+.|+.|+..+||.++|+.|.+|++-+++.|||+|.. +...+.+.++..+.+|++.||+| .+|.++-++.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 455567799999999999999999999999999999999999976 44555543344566888999997 7999999999
Q ss_pred EeCCCCHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe-----ccCCC
Q 043814 133 VQAGATIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD-----REAMG 207 (524)
Q Consensus 133 v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~-----~~~~~ 207 (524)
+++|+.-.+|.++|.+.|+.-.-.+.+..-.++||+++..+.|+.-..||.+-|.|+-+++|+|.|.+.. +-..+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999985322223334446799999999999999999999999999999999999884 23468
Q ss_pred chhhhhhhccCCCcceEEEEEEEEEEecCceEEEEEEEecc
Q 043814 208 EDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTL 248 (524)
Q Consensus 208 ~dlf~a~rg~~~g~~GIvt~~tlk~~p~~~~~~~~~~~~~~ 248 (524)
||+-.-+.|+. |++||||++|+|+.|+|+....-.+.|+.
T Consensus 313 PDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 313 PDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred CCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCc
Confidence 99999999998 99999999999999999876655555653
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=6.6e-21 Score=191.10 Aligned_cols=163 Identities=21% Similarity=0.187 Sum_probs=132.0
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCC-CCceEEeCCCCeEEEeCCC
Q 043814 59 SMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAK-LRSIEVDINDNTAWVQAGA 137 (524)
Q Consensus 59 ~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~-~~~i~~d~~~~~v~v~~G~ 137 (524)
+...|.++++|+|+|||++++++|+++++|+.++|+|||....+.+.+ +++|++++ ++.+.++ +.+++|+||+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~----gvVI~l~~~~~~i~~~--~~~v~v~AG~ 105 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR----GVVLRLPQDFPGESTD--GGRLVLGAGA 105 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe----eEEEEecCCcceEEec--CCEEEEECCC
Confidence 345899999999999999999999999999999999999875443333 79999976 4556544 4699999999
Q ss_pred CHHHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCcc-ccCCcccceeEEEEEccCCcEEeccCCCchhhhhhhc
Q 043814 138 TIGELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMR-KYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRG 216 (524)
Q Consensus 138 ~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~-~~G~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg 216 (524)
.+.+|.+++.++|+ .|.+..+|+.| +.||+..++++ +||.++|+|+++++|+++| +.... ..|+.|+||+
T Consensus 106 ~~~~L~~~~~~~GL-----~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~ 176 (302)
T PRK14652 106 PISRLPARAHAHGL-----VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRT 176 (302)
T ss_pred cHHHHHHHHHHcCC-----cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccce
Confidence 99999999999995 25566666666 55777777775 6677899999999999999 44322 3699999998
Q ss_pred cCCCcceEEEEEEEEEEecC
Q 043814 217 GGGGSFGIILAWKVKLVPVP 236 (524)
Q Consensus 217 ~~~g~~GIvt~~tlk~~p~~ 236 (524)
+..+..||||+++||++|..
T Consensus 177 s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 177 CRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred eccCCCeEEEEEEEEEecCC
Confidence 75333489999999999853
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.85 E-value=7.2e-21 Score=189.65 Aligned_cols=162 Identities=20% Similarity=0.156 Sum_probs=138.2
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCCH
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATI 139 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~~ 139 (524)
...|.++++|+|++||++++++|+++++|+.++|+|||+...+...+ +++|++++|+++.+++ +.+++|+||+.+
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~----gvvi~l~~~~~~~~~~-~~~v~v~aG~~~ 84 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG----GVIINLGKGIDIEDDE-GEYVHVGGGENW 84 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC----eEEEECCCCceEEEec-CCEEEEEcCCcH
Confidence 45799999999999999999999999999999999999987775554 8999999999887666 579999999999
Q ss_pred HHHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCccccCCccc-ceeEEEEEccCCcEEeccCCCchhhhhhhccC
Q 043814 140 GELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGAD-NVVDARIVDASGRILDREAMGEDLFWAIRGGG 218 (524)
Q Consensus 140 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d-~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~~ 218 (524)
.+|.+++.++|+ .|.+..+|+.| ..||+++++++.||..++ .|++++||++||++++.. +.|+.|+||.+.
T Consensus 85 ~~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~ 156 (284)
T TIGR00179 85 HKLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSI 156 (284)
T ss_pred HHHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCccc
Confidence 999999999985 36666666766 468899999999999875 689999999999998743 369999999765
Q ss_pred CCc-c-eEEEEEEEEEEe
Q 043814 219 GGS-F-GIILAWKVKLVP 234 (524)
Q Consensus 219 ~g~-~-GIvt~~tlk~~p 234 (524)
... . .||++++|++.+
T Consensus 157 f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 157 FQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred cCCCCcEEEEEEEEEecc
Confidence 322 2 699999999844
No 23
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.3e-20 Score=189.33 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=131.7
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCCHH
Q 043814 61 PKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIG 140 (524)
Q Consensus 61 ~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~~~ 140 (524)
..+.+++.|+++|||+++|++|+++++|+.++|+|||.+..+.+.+ +++|++++|++|+++. .+++|+||+.+.
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~----GvvI~l~~l~~i~~~~--~~v~v~aG~~~~ 108 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR----GIVISLLSLDHIEVSD--DAIIAGSGAAII 108 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc----eEEEEecCccceEEeC--CEEEEECCCcHH
Confidence 5799999999999999999999999999999999999875554444 8999998899998763 589999999999
Q ss_pred HHHHHHHHhCCCceEecCCCCCccccccccCCCCCCCcccc-CCcccceeEEEEEccCCcEEeccCCCchhhhhhhccCC
Q 043814 141 ELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKY-GLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGG 219 (524)
Q Consensus 141 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~-G~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~~~ 219 (524)
+|.+++.++|+ .|.+..+|+.| ..||+..++++.| |.++|+|++++||+++|++++.. ..|+.|+||.+..
T Consensus 109 ~l~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~ 180 (307)
T PRK13906 109 DVSRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSII 180 (307)
T ss_pred HHHHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccC
Confidence 99999999996 23333345555 3466666666677 48899999999999999999743 3599999997653
Q ss_pred Cc-ceEEEEEEEEEEe
Q 043814 220 GS-FGIILAWKVKLVP 234 (524)
Q Consensus 220 g~-~GIvt~~tlk~~p 234 (524)
.. --||++++||+.|
T Consensus 181 ~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 181 QKEHLVVLEAAFTLAP 196 (307)
T ss_pred CCCCEEEEEEEEEECC
Confidence 22 2499999999986
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=6.1e-19 Score=176.48 Aligned_cols=164 Identities=17% Similarity=0.194 Sum_probs=131.9
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCC-ceEEeCCCCeEEEeCCCC
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLR-SIEVDINDNTAWVQAGAT 138 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~-~i~~d~~~~~v~v~~G~~ 138 (524)
.....++++|++++||++++++|+++++|+.++|+|||++..+.+.+ ++||++++++ ++..+.+..+++|+||+.
T Consensus 18 Gg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~----GvVI~l~~~~~~i~~~~~~~~v~v~AG~~ 93 (295)
T PRK14649 18 GGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD----GLVARYRGQRWELHEHGDTAEVWVEAGAP 93 (295)
T ss_pred CceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC----eEEEEecCCCcEEEEeCCcEEEEEEcCCc
Confidence 44788999999999999999999999999999999999998887666 8999998755 666665555899999999
Q ss_pred HHHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEeccCCCchhhhhhhcc
Q 043814 139 IGELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGG 217 (524)
Q Consensus 139 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~ 217 (524)
|.+|.+++.++|+ ++++..|.++|+|-+..+..|++| +.++|.|.++++++.+|++++.. ..||+|+||-+
T Consensus 94 ~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGayg------~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S 165 (295)
T PRK14649 94 MAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGCYG------GDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTS 165 (295)
T ss_pred HHHHHHHHHHcCCccccccCCCCcchhHHHHhhccccc------eEhheeEEEEEEEeCCCCEEEEe--HHHcCccccee
Confidence 9999999999997 466555555555444444444444 56789999999999999998743 35999999987
Q ss_pred CCCcc---------eEEEEEEEEEEec
Q 043814 218 GGGSF---------GIILAWKVKLVPV 235 (524)
Q Consensus 218 ~~g~~---------GIvt~~tlk~~p~ 235 (524)
..-.. -||++++|++.|.
T Consensus 166 ~~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 166 VLKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ecccccccccccCCeEEEEEEEEECCC
Confidence 53221 2999999999874
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=3.7e-17 Score=163.09 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=132.6
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCCH
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATI 139 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~~ 139 (524)
.....+++.|++.+|+++++++|++ ++|+.++|+|+|.+..+.+.+ ++||.+++|+.|+++. ..++|+||+.+
T Consensus 31 GG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~----gvVI~l~~~~~i~i~~--~~v~v~AG~~l 103 (297)
T PRK14653 31 GGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD----FVVVSTERLDDIFVDN--DKIICESGLSL 103 (297)
T ss_pred CcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc----EEEEEeCCcCceEEeC--CEEEEeCCCcH
Confidence 3477889999999999999999999 999999999999998877666 8999997899998863 58999999999
Q ss_pred HHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccCC-cccceeEEEEEccCCcEEeccCCCchhhhhhhcc
Q 043814 140 GELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYGL-GADNVVDARIVDASGRILDREAMGEDLFWAIRGG 217 (524)
Q Consensus 140 ~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~-~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~ 217 (524)
.+|..++.++|+ ++++..|.+++| ||+.-++.+.||. ++|.|.++++++ +|++++.. ..|+.|.||.+
T Consensus 104 ~~L~~~~~~~GL~GlE~l~gIPGTV-------GGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S 173 (297)
T PRK14653 104 KKLCLVAAKNGLSGFENAYGIPGSV-------GGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNS 173 (297)
T ss_pred HHHHHHHHHCCCcchhhhcCCchhH-------HHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccc
Confidence 999999999998 677777776664 4455555666777 789999999999 78777643 35999999976
Q ss_pred CCCc--ceEEEEEEEEEEec
Q 043814 218 GGGS--FGIILAWKVKLVPV 235 (524)
Q Consensus 218 ~~g~--~GIvt~~tlk~~p~ 235 (524)
..+. --|||+++||+.|-
T Consensus 174 ~~~~~~~~iI~~a~f~L~~~ 193 (297)
T PRK14653 174 IFKEEKDLIILRVTFKLKKG 193 (297)
T ss_pred cCCCCCcEEEEEEEEEEecC
Confidence 5332 12999999999975
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=3.9e-16 Score=152.70 Aligned_cols=165 Identities=22% Similarity=0.210 Sum_probs=140.2
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCC
Q 043814 59 SMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGAT 138 (524)
Q Consensus 59 ~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~ 138 (524)
+......++.|++.||++++++++.++++|+.+.|+|+|.+..+.+.+ +++|.+.+++.++++.+...++|++|+.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~----gvvi~~~~~~~~~~~~~~~~i~a~aG~~ 92 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG----GVVIKLGKLNFIEIEGDDGLIEAGAGAP 92 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc----eEEEEcccccceeeeccCCeEEEccCCc
Confidence 445789999999999999999999999999999999999887766665 8999999999988887777999999999
Q ss_pred HHHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEeccCCCchhhhhhhcc
Q 043814 139 IGELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGG 217 (524)
Q Consensus 139 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~ 217 (524)
|.+|.+++.++|+ +|++..|.+++||-.=.+..|++| +-++|.+.++++++.+|++.+-. +.||-|+||-+
T Consensus 93 ~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGAyG------~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S 164 (291)
T COG0812 93 WHDLVRFALENGLSGLEFLAGIPGSVGGAVIMNAGAYG------VEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTS 164 (291)
T ss_pred HHHHHHHHHHcCCcchhhhcCCCcccchhhhccCcccc------cchheeEEEEEEEcCCCCEEEEE--HHHhCcccccC
Confidence 9999999999998 688888888887555555555555 34689999999999999999733 36999999977
Q ss_pred CCCcc-eEEEEEEEEEEec
Q 043814 218 GGGSF-GIILAWKVKLVPV 235 (524)
Q Consensus 218 ~~g~~-GIvt~~tlk~~p~ 235 (524)
....- .||++++||+.|-
T Consensus 165 ~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 165 PFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred cCCCCCEEEEEEEEEeCCC
Confidence 64333 8999999999974
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=4.8e-16 Score=154.59 Aligned_cols=163 Identities=14% Similarity=0.124 Sum_probs=133.7
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccc-cCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCC
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYV-SQIETPFFLLDLAKLRSIEVDINDNTAWVQAGAT 138 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~-~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~ 138 (524)
.....+++.|+|.+|+++++++++++++|+.+.|+|+|.+..+.+ .+ ++||.+.+|+.++++. ..++|++|+.
T Consensus 30 GG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~----g~vi~~~~~~~i~~~~--~~v~a~AG~~ 103 (302)
T PRK14650 30 GGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID----FPIIYTGHLNKIEIHD--NQIVAECGTN 103 (302)
T ss_pred CcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc----eEEEEECCcCcEEEeC--CEEEEEeCCc
Confidence 347788999999999999999999999999999999999877765 55 7888887799998764 4799999999
Q ss_pred HHHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEeccCCCchhhhhhhcc
Q 043814 139 IGELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGG 217 (524)
Q Consensus 139 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~ 217 (524)
|.+|.+++.++|+ ++++..|.++|||-+=.+..|++| +.++|.|.++++++.+|++++.. ..|+.|+||-+
T Consensus 104 ~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGayG------~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S 175 (302)
T PRK14650 104 FEDLCKFALQNELSGLEFIYGLPGTLGGAIWMNARCFG------NEISEILDKITFIDEKGKTICKK--FKKEEFKYKIS 175 (302)
T ss_pred HHHHHHHHHHcCCchhhhhcCCCcchhHHHHhhCCccc------cchheeEEEEEEEECCCCEEEEE--HHHcCcccccc
Confidence 9999999999998 688888888877544444444444 35679999999999999988633 36999999976
Q ss_pred CCCc-ceEEEEEEEEEEecC
Q 043814 218 GGGS-FGIILAWKVKLVPVP 236 (524)
Q Consensus 218 ~~g~-~GIvt~~tlk~~p~~ 236 (524)
.... =.||++++|++.|..
T Consensus 176 ~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 176 PFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred cCCCCCEEEEEEEEEEcCCC
Confidence 5221 249999999998754
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=4.9e-16 Score=156.78 Aligned_cols=162 Identities=17% Similarity=0.072 Sum_probs=131.5
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEe-CCC--CeEEEeCC
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVD-IND--NTAWVQAG 136 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d-~~~--~~v~v~~G 136 (524)
......++.|+|++|+++++++|+++++|+.+.|+|+|....+ ..+ ++||.+ +|++++++ .++ ..++|++|
T Consensus 18 GG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~----g~vI~~-~~~~~~~~~~~~~~~~v~a~AG 91 (334)
T PRK00046 18 DARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD----GTVLLN-RIKGIEVLSEDDDAWYLHVGAG 91 (334)
T ss_pred CcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC----EEEEEe-cCCceEEEecCCCeEEEEEEcC
Confidence 3478889999999999999999999999999999999988776 555 888887 48998873 222 27999999
Q ss_pred CCHHHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccC-CcEEeccCCCchhhhhh
Q 043814 137 ATIGELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDAS-GRILDREAMGEDLFWAI 214 (524)
Q Consensus 137 ~~~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~-G~v~~~~~~~~dlf~a~ 214 (524)
+.|.+|.+++.++|+ ++++..|.++|||-+=.+..|++| +.++|.|.++++++.+ |++++.. +.|+.|+|
T Consensus 92 ~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG------~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~Y 163 (334)
T PRK00046 92 ENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGAYG------VELKDVCDYVEALDLATGEFVRLS--AAECRFGY 163 (334)
T ss_pred CcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCcCc------ccHheeEEEEEEEECCCCcEEEEE--HHHcCccc
Confidence 999999999999998 688888888877544444444444 3567999999999987 9988633 36999999
Q ss_pred hccCCCc----ceEEEEEEEEEEec
Q 043814 215 RGGGGGS----FGIILAWKVKLVPV 235 (524)
Q Consensus 215 rg~~~g~----~GIvt~~tlk~~p~ 235 (524)
|-+.... --||++++|++.|-
T Consensus 164 R~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 164 RDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred ccccCCCCCcCCEEEEEEEEEecCC
Confidence 9775322 23999999999984
No 29
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.65 E-value=7.2e-17 Score=115.42 Aligned_cols=47 Identities=53% Similarity=0.967 Sum_probs=35.1
Q ss_pred ccccCCCcccCCCCCCCcchhhhchhhhhhhcccHHHHHHHHhhcCCCCCCccCCCCC
Q 043814 456 AYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIP 513 (524)
Q Consensus 456 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~y~g~n~~RL~~IK~kyDP~nvF~~~~~I~ 513 (524)
+|+||+|.+++ ...|.+.|||+|++||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999999965 237999999999999999999999999999999997
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=3.7e-15 Score=150.16 Aligned_cols=166 Identities=24% Similarity=0.227 Sum_probs=130.8
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEe---CCCCeEEEeCC
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVD---INDNTAWVQAG 136 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d---~~~~~v~v~~G 136 (524)
.....+++.|+|.+|+++++++++++++|+.+.|+|+|.+..+.+.+ ++||.+++|+.+++. .+...++|++|
T Consensus 27 GG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~----G~VI~l~~~~~i~i~~~~~~~~~v~agAG 102 (354)
T PRK14648 27 GGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP----GLMLSLRRFRSLHTQTQRDGSVLVHAGAG 102 (354)
T ss_pred CcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc----EEEEEeCCcCceEEeeccCCcEEEEEEeC
Confidence 44778899999999999999999999999999999999988777666 899999779988752 22247999999
Q ss_pred CCHHHHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccC-CcccceeEEEEE--------------------
Q 043814 137 ATIGELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYG-LGADNVVDARIV-------------------- 194 (524)
Q Consensus 137 ~~~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G-~~~d~v~~~~vv-------------------- 194 (524)
+.|.+|.+++.++|+ ++++..|.+++||-+ .=+|.+.|| .+.|.|.+++++
T Consensus 103 ~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGA-------v~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~ 175 (354)
T PRK14648 103 LPVAALLAFCAHHALRGLETFAGLPGSVGGA-------AYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQ 175 (354)
T ss_pred CcHHHHHHHHHHcCCcchhhhcCCCcchhhH-------hhhcCCccceEhhheEEEEEEEeccCcccccccccccccccc
Confidence 999999999999998 688888888877544 444455555 467999999999
Q ss_pred ccCCcEEe-----------ccCCCchhhhhhhccCCCc---------ceEEEEEEEEEEecC
Q 043814 195 DASGRILD-----------REAMGEDLFWAIRGGGGGS---------FGIILAWKVKLVPVP 236 (524)
Q Consensus 195 ~~~G~v~~-----------~~~~~~dlf~a~rg~~~g~---------~GIvt~~tlk~~p~~ 236 (524)
+.+|++.. ..-.+.|+.|+||-+..-. --||++++|++.|..
T Consensus 176 ~~~g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 176 DKRGECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred cCCCceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 45677620 0112469999999775321 139999999998753
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.56 E-value=3.7e-15 Score=147.04 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCC-CCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHHHHHHHHH
Q 043814 71 NESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQI-ETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGELYYRIAE 148 (524)
Q Consensus 71 s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~-~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~ 148 (524)
.+.+||+-|+.-+..+-+-.+..+.-+|+..+....- +....-|++..+.+| ++|.++.+|+|+|+|+++++.++|.+
T Consensus 62 rVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip 141 (543)
T KOG1262|consen 62 RVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIP 141 (543)
T ss_pred HHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhcc
Confidence 3444455454434444333344444555433332210 112344666655554 89999999999999999999999999
Q ss_pred hCCCceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEe--ccCCCchhhhhhhccCCCcceEEE
Q 043814 149 KSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILD--REAMGEDLFWAIRGGGGGSFGIIL 226 (524)
Q Consensus 149 ~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~--~~~~~~dlf~a~rg~~~g~~GIvt 226 (524)
.|+.|++. ..-.+.++||++.|-|+-..|++||+..+.+.+.|||++||++++ .+.+++|||+|+-.+. |++|..+
T Consensus 142 ~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLV 219 (543)
T KOG1262|consen 142 KGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLV 219 (543)
T ss_pred CCceeeee-cccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEccccc-Cchheee
Confidence 99776543 455678999999999999999999999999999999999999996 4457899999999998 9999999
Q ss_pred EEEEEEEecCceEE
Q 043814 227 AWKVKLVPVPATVT 240 (524)
Q Consensus 227 ~~tlk~~p~~~~~~ 240 (524)
.+|+|+.|+.+.+.
T Consensus 220 aatiriIkvK~Yvk 233 (543)
T KOG1262|consen 220 AATIRIIKVKKYVK 233 (543)
T ss_pred eeEEEEEeccceEE
Confidence 99999999988653
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.47 E-value=3.5e-13 Score=132.32 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=117.0
Q ss_pred CceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCC-CCceEEeCCCCeEEEeCCCCHH
Q 043814 62 KPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAK-LRSIEVDINDNTAWVQAGATIG 140 (524)
Q Consensus 62 ~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~-~~~i~~d~~~~~v~v~~G~~~~ 140 (524)
...+++ |++++|+++++ ++|+.+.|+|+|.+..+.+.+ ++||.+.+ ++.++++. +|++|+.+.
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~----g~vI~l~~~~~~~~~~~-----~a~AG~~~~ 83 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP----ERVIRLGGEFAEWDLDG-----WVGGGVPLP 83 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc----eEEEEECCcceeEeECC-----EEECCCcHH
Confidence 455566 99999999988 589999999999988776666 88888865 66665532 699999999
Q ss_pred HHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccC-CcccceeEEEEEccCCcEEeccCCCchhhhhhhccC
Q 043814 141 ELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYG-LGADNVVDARIVDASGRILDREAMGEDLFWAIRGGG 218 (524)
Q Consensus 141 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G-~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~~ 218 (524)
+|.+++.++|+ ++++..|.++|||-+ .-+|.+.|| .++|.|.++++++ +|++++.. +.|+.|+||.+.
T Consensus 84 ~l~~~~~~~gl~GlE~l~gIPGTVGGA-------v~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~ 153 (273)
T PRK14651 84 GLVRRAARLGLSGLEGLVGIPAQVGGA-------VKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSG 153 (273)
T ss_pred HHHHHHHHCCCcchhhhcCCCcchhhH-------HHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccC
Confidence 99999999998 688888888877544 444444555 4679999999997 89988733 369999999765
Q ss_pred CCcceEEEEEEEEEEec
Q 043814 219 GGSFGIILAWKVKLVPV 235 (524)
Q Consensus 219 ~g~~GIvt~~tlk~~p~ 235 (524)
...--||++++||+.|-
T Consensus 154 ~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 154 LPPGHVVTRVRLKLRPS 170 (273)
T ss_pred CCCCEEEEEEEEEECCC
Confidence 22223999999999874
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.19 E-value=1.1e-10 Score=113.72 Aligned_cols=143 Identities=15% Similarity=0.094 Sum_probs=110.2
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCCHH
Q 043814 61 PKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGATIG 140 (524)
Q Consensus 61 ~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~~~ 140 (524)
...++++.|++.+ + ++|+.+.|+|+|.+..+.+.+ +++ -+++|+.++++. ..++|++|+.+.
T Consensus 17 G~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~----~vv-~~~~~~~~~~~~--~~v~~~AG~~l~ 78 (257)
T PRK13904 17 PPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN----LAI-LGKNFDYIKIDG--ECLEIGGATKSG 78 (257)
T ss_pred ceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc----EEE-EccCcCeEEEeC--CEEEEEcCCcHH
Confidence 3567778888887 5 899999999999887666543 444 346688888754 479999999999
Q ss_pred HHHHHHHHhCC-CceEecCCCCCccccccccCCCCCCCccccCCcccceeEEEEEccCCcEEeccCCCchhhhhhhccCC
Q 043814 141 ELYYRIAEKSN-TQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNVVDARIVDASGRILDREAMGEDLFWAIRGGGG 219 (524)
Q Consensus 141 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v~~~~vv~~~G~v~~~~~~~~dlf~a~rg~~~ 219 (524)
+|.+++.++|+ ++++..|.+++||-+=.+..|++| +.++|.|.++++++ |+ + ...|+.|+||-+..
T Consensus 79 ~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa~g------~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~ 145 (257)
T PRK13904 79 KIFNYAKKNNLGGFEFLGKLPGTLGGLVKMNAGLKE------YEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI 145 (257)
T ss_pred HHHHHHHHCCCchhhhhcCCCccHHHHHHhcCCcCc------cchheeEEEEEEEe--eE-E----eHHHCcccccCcCC
Confidence 99999999998 688888888887544444445444 34679999999998 42 2 24699999997652
Q ss_pred CcceEEEEEEEEEEecC
Q 043814 220 GSFGIILAWKVKLVPVP 236 (524)
Q Consensus 220 g~~GIvt~~tlk~~p~~ 236 (524)
-.||++++||+.|..
T Consensus 146 --~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 --NGVILEARFKKTHGF 160 (257)
T ss_pred --CcEEEEEEEEECCCC
Confidence 249999999999854
No 34
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=95.15 E-value=0.043 Score=53.30 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHh-ccccccCCCCcccccCCCcccCCCCCCCcchhhhchhhhhhhcccHHHHHHHHhhcCCCCCCccC
Q 043814 433 KHIGWIRRLYDY-MAPYVSMFPRAAYVNYRDLDLGINKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHE 509 (524)
Q Consensus 433 ~~~~w~~~~~~~-~~~~~~~~~~g~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~y~g~n~~RL~~IK~kyDP~nvF~~~ 509 (524)
...+....+.+. +.+|.+..++|-.=|....+ ....| .++++.++||+++||+++|.++
T Consensus 138 ~~~~~f~eiEqial~kygGRPHWGK~h~l~~~~----------------l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 138 LHEDAMEEIEQMAILKYGALPHWGKNRNAAFDG----------------AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cHHHHHHHHHHHHHHhcCCcCCchhccCCCHHH----------------HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 333444444333 56665545566655543332 33444 6899999999999999999865
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=94.98 E-value=0.031 Score=51.71 Aligned_cols=106 Identities=20% Similarity=0.246 Sum_probs=61.9
Q ss_pred ceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHH
Q 043814 63 PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGE 141 (524)
Q Consensus 63 P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 141 (524)
+..++.|+|.+|+.++++ .+-...+.+||++....-. .+......+||++++... .|..+++.+++|+++++.+
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~-~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMR-EGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHH-TTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcc-cCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 456789999999999998 2235789999998531110 000012589999876543 3333467999999999999
Q ss_pred HHHH--HHHh------CCCceEecCCCCCccccccccCCC
Q 043814 142 LYYR--IAEK------SNTQGFTAGLCPSVGSGGHITGGG 173 (524)
Q Consensus 142 l~~~--l~~~------g~~l~~~~g~~~~vgvgG~~~ggg 173 (524)
+.+. +.+. .....-....-...++||.+..+.
T Consensus 77 l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 77 LEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTB
T ss_pred HhhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccCc
Confidence 9876 1111 000001122335567888885444
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=94.68 E-value=0.1 Score=51.53 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=84.3
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHHHH
Q 043814 65 FIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGELY 143 (524)
Q Consensus 65 ~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 143 (524)
.+..|+|.+|+.++++- ++-...+.+||+...... ... +..++||++++ .. .+..+++.+++|+++++.++.
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~-~~~--~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~ 76 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATP-TRT--DKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLR 76 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhh-CCC--CCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHH
Confidence 46789999999988763 333467899999974221 111 23689999975 43 344566899999999999997
Q ss_pred HHH------HHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccc-----eeEEEEEccCCcEEeccCCCchhhh
Q 043814 144 YRI------AEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADN-----VVDARIVDASGRILDREAMGEDLFW 212 (524)
Q Consensus 144 ~~l------~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~-----v~~~~vv~~~G~v~~~~~~~~dlf~ 212 (524)
+.. .+.- ...-.+..-+..++||.+..+-- .+|. .+..+|+..+++.+.- .|+|-
T Consensus 77 ~~~~~~~~L~~a~-~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~~ 142 (258)
T PRK09799 77 DARFIPAALREAL-GFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYLA 142 (258)
T ss_pred hCcccHHHHHHHH-HHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhcC
Confidence 642 1110 00011234456678888764421 1343 2566777766644421 24442
Q ss_pred hhhccCCCcceEEEEEEEE
Q 043814 213 AIRGGGGGSFGIILAWKVK 231 (524)
Q Consensus 213 a~rg~~~g~~GIvt~~tlk 231 (524)
|.. =.|||++.+.
T Consensus 143 ---g~~---~Eil~~I~iP 155 (258)
T PRK09799 143 ---CPC---DRLLTEIIIP 155 (258)
T ss_pred ---CCC---CcEEEEEEcC
Confidence 222 2588888765
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=93.64 E-value=0.15 Score=51.34 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=85.1
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCC-CccccCCCCCeEEEEcCCCCce-EEe-CCCCeEEEeCCCCHHH
Q 043814 65 FIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEG-LSYVSQIETPFFLLDLAKLRSI-EVD-INDNTAWVQAGATIGE 141 (524)
Q Consensus 65 ~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g-~~~~~~~~~~~vvIdl~~~~~i-~~d-~~~~~v~v~~G~~~~~ 141 (524)
-++.|+|.+|..++++. +. ...+.+||+++.. ...... +...+||++++... .|. .+++.+++|+++++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~--~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~ 79 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHND--RYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQ 79 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCC--CCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHH
Confidence 57889999999988774 22 3578999999631 111111 23688999876543 233 2346799999999999
Q ss_pred HHH--HHHHhC------CCceEecCCCCCccccccccCCCCCCCccccCCcccce-----e--EEEEEccCCcEEeccCC
Q 043814 142 LYY--RIAEKS------NTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNV-----V--DARIVDASGRILDREAM 206 (524)
Q Consensus 142 l~~--~l~~~g------~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v-----~--~~~vv~~~G~v~~~~~~ 206 (524)
+.+ .+.+.- ....-.+..-+..++||.+..+... +|.+ + .+++..++|+... +
T Consensus 80 l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p~---------sD~~~~Llal~A~v~i~~~~g~R~v-p-- 147 (291)
T PRK09971 80 IIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGATS---------ADSAPPLFALDAKLEIHSPNGVRFV-P-- 147 (291)
T ss_pred HhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCcc---------hhHHHHHHHcCCEEEEEcCCCcEEE-E--
Confidence 975 121110 0001113445667788988754321 3432 3 3344556674221 1
Q ss_pred CchhhhhhhccCCCcceEEEEEEEEEEe
Q 043814 207 GEDLFWAIRGGGGGSFGIILAWKVKLVP 234 (524)
Q Consensus 207 ~~dlf~a~rg~~~g~~GIvt~~tlk~~p 234 (524)
=.|+|-+.+----..=-|||++.+...+
T Consensus 148 ~~df~~g~~~t~l~~~Eil~~I~iP~~~ 175 (291)
T PRK09971 148 INGFYTGPGKVSLEHDEILVAFIIPPEP 175 (291)
T ss_pred HHHhcCCccccccCCCceEEEEEeCCCC
Confidence 1355543221000111389999886433
No 38
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.30 E-value=0.28 Score=48.42 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=81.1
Q ss_pred EEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHHHHH
Q 043814 66 IFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGELYY 144 (524)
Q Consensus 66 vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 144 (524)
++.|+|.+|..++++. ++-.-.+.+||++..-.-. .. +..++||++++ .. .|..+++.+++|+++++.++.+
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~-~~--~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPT-RT--DKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhc-cc--CCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 5789999999887763 3223567899999742211 11 13588998875 43 3444567899999999999875
Q ss_pred H------HHHhCCCceEecCCCCCccccccccCCCCCCCccccCCcccc-----eeEEEEEccCCcEEeccCCCchhhhh
Q 043814 145 R------IAEKSNTQGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADN-----VVDARIVDASGRILDREAMGEDLFWA 213 (524)
Q Consensus 145 ~------l~~~g~~l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~-----v~~~~vv~~~G~v~~~~~~~~dlf~a 213 (524)
. |.+.- ...-.+..-+..++||.+..+.-. .|. .+..+|...+.+.+.. .|+|-+
T Consensus 77 ~~~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~p~---------~D~~~~LlaldA~v~l~~~r~vp~----~dF~~g 142 (257)
T TIGR03312 77 NELTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQSE---------SLLLPVLLALKATVVLANASQMDI----EDYLAS 142 (257)
T ss_pred CcchHHHHHHHH-HHhCCHHHhccccHHHHhhcCCCc---------hHHHHHHHHcCCEEEEecCcEEeH----HHhcCC
Confidence 2 22210 011123444666788888654321 233 2455666555543321 244432
Q ss_pred hhccCCCcceEEEEEEEE
Q 043814 214 IRGGGGGSFGIILAWKVK 231 (524)
Q Consensus 214 ~rg~~~g~~GIvt~~tlk 231 (524)
.. + -+|+++.+.
T Consensus 143 ---~~-~--Ell~~V~iP 154 (257)
T TIGR03312 143 ---EQ-R--ELIVEVIIP 154 (257)
T ss_pred ---CC-C--cEEEEEEcC
Confidence 21 2 488888765
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=91.90 E-value=0.082 Score=52.46 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=24.2
Q ss_pred chhhhhhhcccHHHHHHHHhhcCCCCCCccCCCC
Q 043814 479 SAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSI 512 (524)
Q Consensus 479 ~~~~~~y~g~n~~RL~~IK~kyDP~nvF~~~~~I 512 (524)
++|. .-||+.|+|+++.|++|||.+++.--|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 4796 56799999999999999999999877665
No 40
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.79 E-value=0.48 Score=50.95 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=89.2
Q ss_pred ceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCC-ccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHH
Q 043814 63 PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGL-SYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIG 140 (524)
Q Consensus 63 P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~-~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~ 140 (524)
..-++.|+|.+|+.++++. +. ...+.+||++..-. ..... +...+||++++..+ .|..+++.+++|+++++.
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~--~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMR--DLPDVIYVGQVAELKRIEETDDGIEIGAAVTLT 265 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCC--CCCeEEECCCChhhccEEEcCCEEEEecCCcHH
Confidence 4568999999999988864 22 35789999997321 11111 23689999886543 244456789999999999
Q ss_pred HHHHHHHHhCCC------ceEecCCCCCccccccccCCCCCCCccccCCcccce-----e--EEEEEccCCcEEeccCCC
Q 043814 141 ELYYRIAEKSNT------QGFTAGLCPSVGSGGHITGGGYGTMMRKYGLGADNV-----V--DARIVDASGRILDREAMG 207 (524)
Q Consensus 141 ~l~~~l~~~g~~------l~~~~g~~~~vgvgG~~~ggg~G~~~~~~G~~~d~v-----~--~~~vv~~~G~v~~~~~~~ 207 (524)
++.+.+.+.=-. ..-....-+..++||.+..+.- .+|.. + .+++...+|+... + =
T Consensus 266 el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~v-p--l 333 (467)
T TIGR02963 266 DAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTL-P--L 333 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEE-e--H
Confidence 998765543100 1011244566778888865432 23432 3 3444555664221 1 1
Q ss_pred chhhhhhhccCCCcceEEEEEEEEE
Q 043814 208 EDLFWAIRGGGGGSFGIILAWKVKL 232 (524)
Q Consensus 208 ~dlf~a~rg~~~g~~GIvt~~tlk~ 232 (524)
.|+|-+++--.-..--||+++.+..
T Consensus 334 ~dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 334 EDFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred HHhhcccccccCCCCceEEEEEecC
Confidence 3555544311101224999988763
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=89.60 E-value=0.59 Score=47.62 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=62.8
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHHH
Q 043814 64 EFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGEL 142 (524)
Q Consensus 64 ~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l 142 (524)
-.++.|+|.+|..++++-. + .-.+.+||++....-. .+......+||++++..+ .|..+.+.+++|+++++.++
T Consensus 5 f~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~-~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l 79 (321)
T TIGR03195 5 FRTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLR-RGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAAL 79 (321)
T ss_pred ceEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHh-cccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHH
Confidence 3578999999999887642 2 2468999998631111 110123688999875443 23344578999999999998
Q ss_pred HHH---------HHHhCCCceEecCCCCCccccccccC
Q 043814 143 YYR---------IAEKSNTQGFTAGLCPSVGSGGHITG 171 (524)
Q Consensus 143 ~~~---------l~~~g~~l~~~~g~~~~vgvgG~~~g 171 (524)
.+. |.+.- ...-.+..-...++||.+..
T Consensus 80 ~~~~~i~~~~p~L~~a~-~~ias~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 80 AEDALVRTRWPALAQAA-RAVAGPTHRAAATLGGNLCL 116 (321)
T ss_pred hhChhhHhHhHHHHHHH-HHhCCHHHhCceecHHhhhc
Confidence 552 11110 00011344466788999875
No 42
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=89.12 E-value=0.34 Score=47.78 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=18.9
Q ss_pred hhhhhhhcccHHHHHHHHhhcCCCCCCcc
Q 043814 480 AWGTKYFKDNFNRLVRVKIKVDPDNIFRH 508 (524)
Q Consensus 480 ~~~~~y~g~n~~RL~~IK~kyDP~nvF~~ 508 (524)
...+.| +++++..++|+++||+|+|.+
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCC
Confidence 344555 899999999999999999975
No 43
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=87.68 E-value=0.77 Score=45.56 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCC-ccc-cCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHHHHHH
Q 043814 69 PLNESHVRAAVICSRDLRIHLRIRSGGHDYEGL-SYV-SQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGELYYR 145 (524)
Q Consensus 69 p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~-~~~-~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~ 145 (524)
|+|.+|+.++++.. . ...+.+||+.+.-. -.. .. ....+||++++... .|..+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~--~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~ 74 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLP--MKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKN 74 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCC--CCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhC
Confidence 78899998888753 2 35789999986311 111 01 13688999887654 45556789999999999999642
Q ss_pred --H-------HHhCCCceEecCCCCCccccccccCC
Q 043814 146 --I-------AEKSNTQGFTAGLCPSVGSGGHITGG 172 (524)
Q Consensus 146 --l-------~~~g~~l~~~~g~~~~vgvgG~~~gg 172 (524)
+ .+.- ...-....-+..++||.+..+
T Consensus 75 ~~i~~~~p~L~~a~-~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 75 PLIKRALPCFVDAA-SAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHhHHHHHHH-HHhcCHHHhcceecHHhccCc
Confidence 1 1110 010113444667889998754
No 44
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=85.22 E-value=1.2 Score=43.00 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=19.9
Q ss_pred hhhhhhcc-cHHHHHHHHhhcCCCCCCc
Q 043814 481 WGTKYFKD-NFNRLVRVKIKVDPDNIFR 507 (524)
Q Consensus 481 ~~~~y~g~-n~~RL~~IK~kyDP~nvF~ 507 (524)
|-...+|+ .+.-+++||+.+||+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 44445565 6999999999999999985
No 45
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=82.84 E-value=3.8 Score=36.28 Aligned_cols=42 Identities=17% Similarity=-0.025 Sum_probs=34.5
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEeC-CcCCCCCccccC
Q 043814 65 FIFTPLNESHVRAAVICSRDLRIHLRIRSG-GHDYEGLSYVSQ 106 (524)
Q Consensus 65 ~vv~p~s~edv~~~v~~a~~~~~~v~~~gg-Gh~~~g~~~~~~ 106 (524)
+=+.|++.+.+...+++++.+++||++... |+.+.+...+..
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~gf~ 50 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVSGFM 50 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEeccC
Confidence 456899999999999999999999999764 888776555444
No 46
>PLN02906 xanthine dehydrogenase
Probab=82.07 E-value=2.6 Score=51.33 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=56.0
Q ss_pred ceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHH
Q 043814 63 PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGE 141 (524)
Q Consensus 63 P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 141 (524)
...++.|+|.+|+.++++.. . ..++.+||++..-.- .....+..++||++++..+ .|..++..+++|+++++.+
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~-~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~e 302 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEM-RFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSE 302 (1319)
T ss_pred CceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHh-hhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHH
Confidence 34688999999999887643 1 257789999973211 1111124689999876553 3444567899999999999
Q ss_pred HHHHHHH
Q 043814 142 LYYRIAE 148 (524)
Q Consensus 142 l~~~l~~ 148 (524)
+.+.|.+
T Consensus 303 l~~~l~~ 309 (1319)
T PLN02906 303 LQNLFRK 309 (1319)
T ss_pred HHHHHHH
Confidence 9986544
No 47
>PLN00192 aldehyde oxidase
Probab=82.01 E-value=3.8 Score=49.99 Aligned_cols=107 Identities=10% Similarity=0.074 Sum_probs=68.4
Q ss_pred ceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHH
Q 043814 63 PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGE 141 (524)
Q Consensus 63 P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 141 (524)
..-++.|+|.+|+.++++.....+-...+..||+++.-. .... ...++||++++..+ .|..+++.+++|+++++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~-k~~~--~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~e 309 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYY-KDEE--LYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISK 309 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceee-eccC--CCCeEEEcCCChhhhcEEecCCEEEEeecCcHHH
Confidence 456899999999998876421011236788999996322 1111 23689999876553 3444567899999999999
Q ss_pred HHHHHHHhCCC------------ceEecCCCCCccccccccCC
Q 043814 142 LYYRIAEKSNT------------QGFTAGLCPSVGSGGHITGG 172 (524)
Q Consensus 142 l~~~l~~~g~~------------l~~~~g~~~~vgvgG~~~gg 172 (524)
+.+.+...-.. +.-.....+..++||++..+
T Consensus 310 l~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 310 AIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 98766543110 00012344566788888654
No 48
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=79.64 E-value=4.9 Score=41.19 Aligned_cols=140 Identities=17% Similarity=0.145 Sum_probs=83.9
Q ss_pred ceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHH
Q 043814 63 PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGE 141 (524)
Q Consensus 63 P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 141 (524)
-..++.|.+.+|+..++.. +-..++..|++.+.-+...... +-..+|-..++..+ +|+..++.+++++|+++.+
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr-~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~ 277 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMR-DLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQ 277 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHh-hcCCeEEecchhhhheeeecCCcEEEccCccHHH
Confidence 4468889999999888754 3356788888887433322110 11345555555553 4556678999999999999
Q ss_pred HHHHHHHhCCCce--Ee-cC---CCCCccccccccCCCCCCCccccCCcc--cceeEEEEEccCCcEEe-ccCCCchhhh
Q 043814 142 LYYRIAEKSNTQG--FT-AG---LCPSVGSGGHITGGGYGTMMRKYGLGA--DNVVDARIVDASGRILD-REAMGEDLFW 212 (524)
Q Consensus 142 l~~~l~~~g~~l~--~~-~g---~~~~vgvgG~~~ggg~G~~~~~~G~~~--d~v~~~~vv~~~G~v~~-~~~~~~dlf~ 212 (524)
.+..|..+=-.|. +. .| .-+.-++||.+..|.- -|.+- =..++.++++-.|+-.+ .+ -.|+|-
T Consensus 278 a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~RtlP--Le~~Fi 349 (493)
T COG4630 278 AYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRRTLP--LEDYFI 349 (493)
T ss_pred HHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCccccc--HHHHHH
Confidence 9999877521100 00 12 2244457777755531 13222 12377788887766543 22 237777
Q ss_pred hhh
Q 043814 213 AIR 215 (524)
Q Consensus 213 a~r 215 (524)
+|+
T Consensus 350 ~Y~ 352 (493)
T COG4630 350 AYG 352 (493)
T ss_pred Hhh
Confidence 775
No 49
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=77.14 E-value=5.9 Score=48.33 Aligned_cols=78 Identities=9% Similarity=0.102 Sum_probs=55.4
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCc-cccCCCCCeEEEEcCCCCce-EEeCCCCeEEEeCCCCHHH
Q 043814 64 EFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLS-YVSQIETPFFLLDLAKLRSI-EVDINDNTAWVQAGATIGE 141 (524)
Q Consensus 64 ~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~-~~~~~~~~~vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 141 (524)
...+.|+|.+|+.++++.. . .-++..||+++.-.- .... +...+||+++...+ .|..+++.+++|+++++.+
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~~--~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~e 310 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKGV--FHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQ 310 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhccC--CCCeEEECCCChhhhcEEEcCCEEEEeccccHHH
Confidence 4688999999999987643 2 356789999974211 1111 22588999876554 3444567899999999999
Q ss_pred HHHHHH
Q 043814 142 LYYRIA 147 (524)
Q Consensus 142 l~~~l~ 147 (524)
+.+.|.
T Consensus 311 l~~~l~ 316 (1330)
T TIGR02969 311 VKDILA 316 (1330)
T ss_pred HHHHHH
Confidence 998654
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=72.88 E-value=12 Score=37.38 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=53.1
Q ss_pred ceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccc-cCCCCCeEEEEcCCCC-c-eEEeCCCCeEEEeCCCCH
Q 043814 63 PEFIFTPLNESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYV-SQIETPFFLLDLAKLR-S-IEVDINDNTAWVQAGATI 139 (524)
Q Consensus 63 P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~-~~~~~~~vvIdl~~~~-~-i~~d~~~~~v~v~~G~~~ 139 (524)
+..+.+|.|.+|...+++ +.+ --.+.+|||++...-.. .. ....+||+.++. . ..+..+++.+++|+-+++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~--~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~ 76 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIE--RPDHLVDINGLDELLGIVTTEGGSLRIGALVTL 76 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccC--CcceEEEecCChhhhceEeecCCEEEEeecccH
Confidence 567889999998877776 344 57889999997521111 11 236788998874 2 233345677999999999
Q ss_pred HHHHH
Q 043814 140 GELYY 144 (524)
Q Consensus 140 ~~l~~ 144 (524)
.++.+
T Consensus 77 ~ei~~ 81 (284)
T COG1319 77 TEIAR 81 (284)
T ss_pred HHHHh
Confidence 99863
No 51
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=60.62 E-value=13 Score=41.12 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=25.1
Q ss_pred hhhhhhhcc-cHHHHHHHHhhcCCCCCCccC
Q 043814 480 AWGTKYFKD-NFNRLVRVKIKVDPDNIFRHE 509 (524)
Q Consensus 480 ~~~~~y~g~-n~~RL~~IK~kyDP~nvF~~~ 509 (524)
.|-..+||+ .++=+++||+.+||+|+++--
T Consensus 516 ~~l~~~~g~~~~~lm~~IK~a~DP~gILNPG 546 (555)
T PLN02805 516 KYLEKELGIEALQTMKRIKKALDPNNIMNPG 546 (555)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcCcCCCCC
Confidence 577777884 699999999999999999643
No 52
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=59.01 E-value=16 Score=39.70 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=25.1
Q ss_pred hhhhhhhc-ccHHHHHHHHhhcCCCCCCccCCCC
Q 043814 480 AWGTKYFK-DNFNRLVRVKIKVDPDNIFRHEQSI 512 (524)
Q Consensus 480 ~~~~~y~g-~n~~RL~~IK~kyDP~nvF~~~~~I 512 (524)
.|-...|| +.++-+++||+.+||+|+++--.-+
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEe
Confidence 34455566 5799999999999999999744433
No 53
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=58.30 E-value=6.7 Score=41.54 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=23.0
Q ss_pred hhhhhhhcc-cHHHHHHHHhhcCCCCCCc
Q 043814 480 AWGTKYFKD-NFNRLVRVKIKVDPDNIFR 507 (524)
Q Consensus 480 ~~~~~y~g~-n~~RL~~IK~kyDP~nvF~ 507 (524)
.|....|++ .++-|++||+.+||+|+++
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 455566674 7999999999999999985
No 54
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=57.31 E-value=28 Score=34.35 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=67.4
Q ss_pred ccHHHHhhhcCCCCCCCceeecCCCCCchhHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEEeC
Q 043814 15 DNFIKCLTINSEVYIPFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIRSG 94 (524)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~gg 94 (524)
++..+-|++.+- |.+.+++|+-++.+.+.. . ...++.+|++++-+...+.|.+-++.=|
T Consensus 119 ~~a~~~l~~~Ll---P~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKG 177 (263)
T COG0351 119 EEAVEALREELL---PLATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKG 177 (263)
T ss_pred hHHHHHHHHHhh---ccCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 344555555544 678999999888776531 1 2679999999999999999999998889
Q ss_pred CcCCCCCccccCCCCCeEEEEcCCCCce---EEeCCCCeEEEeCCCCHHHHHHHHHHhCC
Q 043814 95 GHDYEGLSYVSQIETPFFLLDLAKLRSI---EVDINDNTAWVQAGATIGELYYRIAEKSN 151 (524)
Q Consensus 95 Gh~~~g~~~~~~~~~~~vvIdl~~~~~i---~~d~~~~~v~v~~G~~~~~l~~~l~~~g~ 151 (524)
||... ...+ ++.|-..+..+ .++.. =+=|.|+++.-.+..-..+|+
T Consensus 178 GH~~~---~~~D-----~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 178 GHLEG---EAVD-----VLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred CCCCC---Ccee-----EEEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcCC
Confidence 99864 1122 44443311111 12211 135889998776655555554
No 55
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=49.94 E-value=79 Score=34.70 Aligned_cols=134 Identities=18% Similarity=0.245 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcCCCCCccccCCCCCeEEEEcC--CCCc---eEEeCCC---CeEEEeCCC----CH
Q 043814 72 ESHVRAAVICSRDLRIHLRIRSGGHDYEGLSYVSQIETPFFLLDLA--KLRS---IEVDIND---NTAWVQAGA----TI 139 (524)
Q Consensus 72 ~edv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~~vvIdl~--~~~~---i~~d~~~---~~v~v~~G~----~~ 139 (524)
.++|.+.++.+.+++-++..+.+-.+++....+.+ |+||-+ .|=+ --.++++ .+..|=|-- ..
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD-----VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vY 386 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD-----VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVY 386 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC-----eEEecCcHHHHhccCCccCCCCCcccceeecCCccchHHH
Confidence 57799999999999999999999888888888877 888854 1211 0122222 233333322 24
Q ss_pred HHHHHHHHHhCCCceEecCCCCCccccccccCCC--CCCCccccCCcccceeEEEEEccCCcEEe-ccCCCchhhhhhh
Q 043814 140 GELYYRIAEKSNTQGFTAGLCPSVGSGGHITGGG--YGTMMRKYGLGADNVVDARIVDASGRILD-REAMGEDLFWAIR 215 (524)
Q Consensus 140 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~ggg--~G~~~~~~G~~~d~v~~~~vv~~~G~v~~-~~~~~~dlf~a~r 215 (524)
.++++.+.++|-.=+...|+.+.||+ ++--+ +|..-..|-...|- .++||+.+|+++- -..+..|+|.++.
T Consensus 387 q~~I~~ck~nGafDp~TmGsV~NVGL---MAqKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~GDIwRmcq 460 (741)
T TIGR00178 387 QVVIEDCKQNGAFDPTTMGTVPNVGL---MAQKAEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEAGDIWRMCQ 460 (741)
T ss_pred HHHHHHHHhcCCCCcccccCCcchhH---hHHHHHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccCCcchhhhh
Confidence 67788899998421222366666644 33221 22111111111222 3688899999994 3345578888765
No 56
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=46.96 E-value=51 Score=35.74 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=50.6
Q ss_pred cHHHHhhhcCCCCCCCcee-ecCCCCCchhHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHhC-CCeEEEE-
Q 043814 16 NFIKCLTINSEVYIPFSNF-YTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNESHVRAAVICSRDL-RIHLRIR- 92 (524)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~~-~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~-~~~v~~~- 92 (524)
.|.+-++++.. |+.-| +.-+-++-+.+.. ++-...= ...|-.+++|.++|+|.++|+.|+++ ..||++.
T Consensus 112 rLv~kara~G~---~I~gvvIsAGIP~le~A~E-lI~~L~~----~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~ 183 (717)
T COG4981 112 RLVQKARASGA---PIDGVVISAGIPSLEEAVE-LIEELGD----DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQW 183 (717)
T ss_pred HHHHHHHhcCC---CcceEEEecCCCcHHHHHH-HHHHHhh----cCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEE
Confidence 35666666532 34444 5566677766642 3333322 24799999999999999999999998 4677763
Q ss_pred ----eCC-cCCCCC
Q 043814 93 ----SGG-HDYEGL 101 (524)
Q Consensus 93 ----ggG-h~~~g~ 101 (524)
+|| |||...
T Consensus 184 egGraGGHHSweDl 197 (717)
T COG4981 184 EGGRAGGHHSWEDL 197 (717)
T ss_pred ecCccCCccchhhc
Confidence 444 456543
No 57
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=44.27 E-value=15 Score=38.12 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.9
Q ss_pred ccc-HHHHHHHHhhcCCCCCCc
Q 043814 487 KDN-FNRLVRVKIKVDPDNIFR 507 (524)
Q Consensus 487 g~n-~~RL~~IK~kyDP~nvF~ 507 (524)
..+ .+-.++||++|||.++|+
T Consensus 323 ~~~~~~l~~~lK~~fDP~~iln 344 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFN 344 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCC
Confidence 345 688899999999999995
No 58
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.79 E-value=33 Score=31.69 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=30.6
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEE
Q 043814 54 RYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRI 91 (524)
Q Consensus 54 r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~ 91 (524)
||.. ...|+.||.+.+++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 5653 45899999999999999999999999886544
No 59
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=40.59 E-value=1.3e+02 Score=33.46 Aligned_cols=28 Identities=11% Similarity=0.408 Sum_probs=22.9
Q ss_pred chhhhhhhcccHHHHHHHHhhcCCCCCCccC
Q 043814 479 SAWGTKYFKDNFNRLVRVKIKVDPDNIFRHE 509 (524)
Q Consensus 479 ~~~~~~y~g~n~~RL~~IK~kyDP~nvF~~~ 509 (524)
....+.| . +++.++|++++||+++|.+.
T Consensus 537 ~~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 537 ERLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 3566665 4 99999999999999999754
No 60
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=39.71 E-value=30 Score=32.21 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcCCC
Q 043814 75 VRAAVICSRDLRIHLRIRSGGHDYE 99 (524)
Q Consensus 75 v~~~v~~a~~~~~~v~~~ggGh~~~ 99 (524)
..+.++|++++++|+.|.++|.++-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567889999999999999999964
No 61
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=32.93 E-value=25 Score=35.69 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=38.6
Q ss_pred ecCCCCCchhHHhhcccccccCCCCCCCceEEEecC------CHHHHHHHHHHHHhCC------CeEEEEeCCc
Q 043814 35 YTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPL------NESHVRAAVICSRDLR------IHLRIRSGGH 96 (524)
Q Consensus 35 ~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~------s~edv~~~v~~a~~~~------~~v~~~ggGh 96 (524)
..|+...|.+.++ ..+.||. ....+++|. .+++|.++|+.+.+.+ +=|.+||||.
T Consensus 21 Ts~~gAa~~D~~~--~~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 21 TSPTGAAIQDFLR--TLKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred eCCchHHHHHHHH--HHHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 4567788888765 3345774 355666665 4689999999998754 5677788886
No 62
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=32.82 E-value=48 Score=33.98 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE--eCCcC
Q 043814 70 LNESHVRAAVICSRDLRIHLRIR--SGGHD 97 (524)
Q Consensus 70 ~s~edv~~~v~~a~~~~~~v~~~--ggGh~ 97 (524)
=|.+||+++|++|+++|+.|++- .=||+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 38999999999999999999883 23665
No 63
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=32.36 E-value=87 Score=26.90 Aligned_cols=35 Identities=6% Similarity=0.013 Sum_probs=30.7
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhCCCeEEEE
Q 043814 54 RYLVPSMPKPEFIFTPLNESHVRAAVICSRDLRIHLRIR 92 (524)
Q Consensus 54 r~~~~~~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ 92 (524)
.|+. ....|++..+++|+.++-+-|++.+++..++
T Consensus 51 ~~~g----~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 51 NLDN----MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred HhCC----CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 4654 8999999999999999999999999886663
No 64
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=30.88 E-value=3.3e+02 Score=28.87 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=32.5
Q ss_pred CceEEEecCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 043814 62 KPEFIFTPLNESHVRAAVICSRDLRIHLRIRSGG 95 (524)
Q Consensus 62 ~P~~vv~p~s~edv~~~v~~a~~~~~~v~~~ggG 95 (524)
....|+.|+-.|-..++.+.|+++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5789999999999999999999999999999998
No 65
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=28.20 E-value=1.3e+02 Score=25.75 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=30.9
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhCCCeE-EEEeCCcC
Q 043814 61 PKPEFIFTPLNESHVRAAVICSRDLRIHL-RIRSGGHD 97 (524)
Q Consensus 61 ~~P~~vv~p~s~edv~~~v~~a~~~~~~v-~~~ggGh~ 97 (524)
..+..|+++.+++++.++.+-|++.+++. .++-.|+.
T Consensus 46 G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 46 GQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 58999999999999999999999999874 44555553
No 66
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=27.89 E-value=82 Score=28.25 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=26.3
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCeEEEEe
Q 043814 64 EFIFTPLNESHVRAAVICSRDLRIHLRIRS 93 (524)
Q Consensus 64 ~~vv~p~s~edv~~~v~~a~~~~~~v~~~g 93 (524)
..|+.|.+.+|+..++++|-+.+-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 467999999999999999998888888873
No 67
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.83 E-value=65 Score=34.36 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=39.1
Q ss_pred ecCCCCCchhHHhhcccccccCCCCCCCceEEEecCCH------HHHHHHHHHHHhC--CCeEEEEeCCc
Q 043814 35 YTPNNSSFLSVLESSAQNLRYLVPSMPKPEFIFTPLNE------SHVRAAVICSRDL--RIHLRIRSGGH 96 (524)
Q Consensus 35 ~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~------edv~~~v~~a~~~--~~~v~~~ggGh 96 (524)
..|+...+.+.++ .-+.||. .-...++|..+ .+|.++|+.+.+. .+=|.+||||.
T Consensus 142 Ts~~gAa~~D~~~--~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 142 TSPTGAAIRDILT--VLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred eCCccHHHHHHHH--HHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 3566777888765 4466774 24566666655 8999999999885 56678888884
No 68
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=26.88 E-value=60 Score=32.77 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEE--eCCcC
Q 043814 69 PLNESHVRAAVICSRDLRIHLRIR--SGGHD 97 (524)
Q Consensus 69 p~s~edv~~~v~~a~~~~~~v~~~--ggGh~ 97 (524)
.=|.+|++++|++|+++|+.|++- .=||.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 357899999999999999999873 34665
No 69
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=26.57 E-value=39 Score=37.06 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=21.3
Q ss_pred hhhhhhcccHHHHHHHHhhcCCCCCCccC
Q 043814 481 WGTKYFKDNFNRLVRVKIKVDPDNIFRHE 509 (524)
Q Consensus 481 ~~~~y~g~n~~RL~~IK~kyDP~nvF~~~ 509 (524)
+.+.| . +++-++|++++||+++|.+.
T Consensus 509 l~~~Y-P--~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 509 LKKKF-P--VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccccH
Confidence 55555 3 89999999999999999754
No 70
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=25.89 E-value=1.4e+02 Score=25.40 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=31.3
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhCCCeEE-EEeCCcC
Q 043814 61 PKPEFIFTPLNESHVRAAVICSRDLRIHLR-IRSGGHD 97 (524)
Q Consensus 61 ~~P~~vv~p~s~edv~~~v~~a~~~~~~v~-~~ggGh~ 97 (524)
..+..|+...+++++.++.+.|++.+++.. ++-.|+.
T Consensus 49 g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~T 86 (116)
T PF01981_consen 49 GQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRT 86 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 589999999999999999999999999864 4567765
No 71
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=25.47 E-value=1.1e+02 Score=28.17 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=26.9
Q ss_pred eEEEecCCHHHHHHHHHHHHh--CCCeEEEEeCC
Q 043814 64 EFIFTPLNESHVRAAVICSRD--LRIHLRIRSGG 95 (524)
Q Consensus 64 ~~vv~p~s~edv~~~v~~a~~--~~~~v~~~ggG 95 (524)
..|+.|.+.+|+..+++++-+ .+-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 678999999999999999999 56899887653
No 72
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=25.14 E-value=5.1e+02 Score=28.85 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=47.3
Q ss_pred Cce-EEEecCCHHHHHHHHHHHHhCC-CeEEEEeC-CcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCCCC
Q 043814 62 KPE-FIFTPLNESHVRAAVICSRDLR-IHLRIRSG-GHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAGAT 138 (524)
Q Consensus 62 ~P~-~vv~p~s~edv~~~v~~a~~~~-~~v~~~gg-Gh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G~~ 138 (524)
.|- .|..|++++|+++.+.+|..++ -|+.+|== |+......... .-.++.++ ...+-+....+.+.=|..
T Consensus 440 iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~-----~~~~~~Gk--~~i~~~G~~vail~~G~~ 512 (627)
T COG1154 440 IPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPE-----LEPLEIGK--GELLKEGEKVAILAFGTM 512 (627)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccc-----cccccccc--eEEEecCCcEEEEecchh
Confidence 454 4667999999999999999998 59988743 33322111100 12233333 122334567888888888
Q ss_pred HHHHHHH
Q 043814 139 IGELYYR 145 (524)
Q Consensus 139 ~~~l~~~ 145 (524)
+......
T Consensus 513 ~~~al~v 519 (627)
T COG1154 513 LPEALKV 519 (627)
T ss_pred hHHHHHH
Confidence 8754433
No 73
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.89 E-value=69 Score=32.56 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE--eCCcC
Q 043814 70 LNESHVRAAVICSRDLRIHLRIR--SGGHD 97 (524)
Q Consensus 70 ~s~edv~~~v~~a~~~~~~v~~~--ggGh~ 97 (524)
=|.+|++++|++|+++|+.|++- .=||+
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 58999999999999999998873 33665
No 74
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.73 E-value=69 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEE--eCCcC
Q 043814 69 PLNESHVRAAVICSRDLRIHLRIR--SGGHD 97 (524)
Q Consensus 69 p~s~edv~~~v~~a~~~~~~v~~~--ggGh~ 97 (524)
+=|.+||++++++|+++|+.|+|- .=||.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 458999999999999999999983 33565
No 75
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=24.53 E-value=59 Score=33.26 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEE--EeCCcC
Q 043814 69 PLNESHVRAAVICSRDLRIHLRI--RSGGHD 97 (524)
Q Consensus 69 p~s~edv~~~v~~a~~~~~~v~~--~ggGh~ 97 (524)
.=|.+||+++|++|+++||.|+| -.=||.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 45789999999999999999987 455786
No 76
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=24.41 E-value=1.6e+02 Score=29.57 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=39.8
Q ss_pred CCceeecCCCCCchhHHhhcccccccCCCCCCCce-EEEecCCHHHHHHHHHHHHhCCCeEEEEeC
Q 043814 30 PFSNFYTPNNSSFLSVLESSAQNLRYLVPSMPKPE-FIFTPLNESHVRAAVICSRDLRIHLRIRSG 94 (524)
Q Consensus 30 ~~~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~-~vv~p~s~edv~~~v~~a~~~~~~v~~~gg 94 (524)
.+..|=.|.+-+|...++ .+|. -++...+.|+|.+++..+.+.++|+.+.|-
T Consensus 238 dl~siP~p~~vd~~~wlk-------------~ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~Ge 290 (324)
T COG2144 238 DLDSIPYPADVDFRQWLK-------------RYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGE 290 (324)
T ss_pred eecccCCcccccHHHHHH-------------hCCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEE
Confidence 345556788888887644 2455 677777888999999999999999998773
No 77
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=23.92 E-value=1.7e+02 Score=25.09 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=31.2
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeEE-EEeCCcC
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHLR-IRSGGHD 97 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v~-~~ggGh~ 97 (524)
...+..++...+++|+.++.+-|++.+++.. ++=.|+.
T Consensus 47 ~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~T 85 (115)
T TIGR00283 47 EGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGHT 85 (115)
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3589999999999999999999999998854 4445553
No 78
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.72 E-value=73 Score=33.02 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEE--eCCcC
Q 043814 71 NESHVRAAVICSRDLRIHLRIR--SGGHD 97 (524)
Q Consensus 71 s~edv~~~v~~a~~~~~~v~~~--ggGh~ 97 (524)
|.+|++++|++|+++|+.|++- .=||.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~ 112 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHA 112 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhH
Confidence 7999999999999999999884 33665
No 79
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=23.31 E-value=75 Score=32.79 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEE--eCCcCC
Q 043814 71 NESHVRAAVICSRDLRIHLRIR--SGGHDY 98 (524)
Q Consensus 71 s~edv~~~v~~a~~~~~~v~~~--ggGh~~ 98 (524)
|.+|++++|++|+++||.|++- .=||+-
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~ 97 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTG 97 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhH
Confidence 8999999999999999999883 347764
No 80
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=23.10 E-value=70 Score=34.24 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE--eCCcC
Q 043814 70 LNESHVRAAVICSRDLRIHLRIR--SGGHD 97 (524)
Q Consensus 70 ~s~edv~~~v~~a~~~~~~v~~~--ggGh~ 97 (524)
=|.|||+++|++|+-+|++|.+- .-||.
T Consensus 247 YT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 247 YTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred ecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 36799999999999999999874 44665
No 81
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=22.26 E-value=1.9e+02 Score=24.75 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=30.5
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhCCCeE-EEEeCCc
Q 043814 60 MPKPEFIFTPLNESHVRAAVICSRDLRIHL-RIRSGGH 96 (524)
Q Consensus 60 ~~~P~~vv~p~s~edv~~~v~~a~~~~~~v-~~~ggGh 96 (524)
...+..|+.+.+++++.++.+.|.+.+++. .++=.|+
T Consensus 47 ~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~ 84 (115)
T cd02407 47 EGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGR 84 (115)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 458999999999999999999999988863 4454555
No 82
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.83 E-value=74 Score=32.45 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEE--eCCcC
Q 043814 71 NESHVRAAVICSRDLRIHLRIR--SGGHD 97 (524)
Q Consensus 71 s~edv~~~v~~a~~~~~~v~~~--ggGh~ 97 (524)
|.+|++++|++|+++|+.|++- .=||+
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~ 108 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHS 108 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHH
Confidence 8999999999999999998873 33665
No 83
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.75 E-value=2.4e+02 Score=25.99 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=32.3
Q ss_pred ceEEEecCCHH-HHHHHHHHHHhCCCeEEEEe-CCcCCCCCccccCCCCCeEEEEcCCCCceEEeCCCCeEEEeCC
Q 043814 63 PEFIFTPLNES-HVRAAVICSRDLRIHLRIRS-GGHDYEGLSYVSQIETPFFLLDLAKLRSIEVDINDNTAWVQAG 136 (524)
Q Consensus 63 P~~vv~p~s~e-dv~~~v~~a~~~~~~v~~~g-gGh~~~g~~~~~~~~~~~vvIdl~~~~~i~~d~~~~~v~v~~G 136 (524)
=..++.|.+.+ |++++++-+.+.+++++.++ ..-. ..+.... --+-||++--+.+--+++...+ +.|.
T Consensus 84 RVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~--~~~l~~~---~~~~Idl~~~~~LvP~EdG~Ri-g~P~ 153 (172)
T PF10740_consen 84 RVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPD--EEDLEDL---ADVHIDLKLPKPLVPTEDGDRI-GFPH 153 (172)
T ss_dssp EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS-----TTGGG----SSS-EE----S-SEE-TTS-EE----H
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCC--CCchhhh---hhheeecccCCCcccCCCCCEe-cchH
Confidence 35667777777 99999999999999999999 2211 1122221 1367888876666666654443 3443
No 84
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.45 E-value=91 Score=33.42 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEE--eCCcCC
Q 043814 71 NESHVRAAVICSRDLRIHLRIR--SGGHDY 98 (524)
Q Consensus 71 s~edv~~~v~~a~~~~~~v~~~--ggGh~~ 98 (524)
|.+||+++|++|++++|.|++- .=||..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~ 124 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHAR 124 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHH
Confidence 8999999999999999999883 347764
No 85
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=20.10 E-value=2.2e+02 Score=24.33 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=29.8
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhCCCeEEE-EeCCc
Q 043814 61 PKPEFIFTPLNESHVRAAVICSRDLRIHLRI-RSGGH 96 (524)
Q Consensus 61 ~~P~~vv~p~s~edv~~~v~~a~~~~~~v~~-~ggGh 96 (524)
..+..|+...+++++.++.+.|.+.+++..+ +=.|+
T Consensus 48 G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG~ 84 (115)
T cd02430 48 GQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAGR 84 (115)
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4799999999999999999999999988544 44444
Done!