Query 043816
Match_columns 378
No_of_seqs 137 out of 1661
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.5E-34 3.2E-39 255.4 27.4 224 105-342 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 3.1E-15 6.7E-20 124.6 18.5 152 205-366 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 2E-14 4.3E-19 114.8 14.7 110 205-317 1-119 (129)
4 PLN03215 ascorbic acid mannose 99.6 2.4E-12 5.1E-17 118.2 25.0 320 2-368 5-373 (373)
5 KOG4441 Proteins containing BT 99.3 2.2E-10 4.8E-15 113.3 18.2 217 103-349 326-554 (571)
6 PHA02713 hypothetical protein; 99.2 2.3E-09 5E-14 106.4 21.0 213 105-352 299-544 (557)
7 PHA02713 hypothetical protein; 99.2 2.8E-09 6.1E-14 105.8 21.2 224 120-372 273-520 (557)
8 PHA03098 kelch-like protein; P 99.1 1.5E-08 3.3E-13 100.8 21.2 200 120-349 312-519 (534)
9 KOG4441 Proteins containing BT 99.0 2.2E-08 4.7E-13 99.3 19.5 201 119-349 301-507 (571)
10 PLN02153 epithiospecifier prot 99.0 1.8E-07 4E-12 87.6 24.5 219 119-350 50-293 (341)
11 PHA02790 Kelch-like protein; P 99.0 4.1E-08 8.8E-13 96.0 20.5 187 119-345 287-475 (480)
12 PF12937 F-box-like: F-box-lik 98.9 2.5E-10 5.4E-15 73.7 1.3 43 1-43 1-43 (47)
13 TIGR03548 mutarot_permut cycli 98.9 3.2E-07 7E-12 85.2 21.8 156 120-292 40-205 (323)
14 TIGR03547 muta_rot_YjhT mutatr 98.9 6.3E-07 1.4E-11 84.1 23.7 174 107-293 15-239 (346)
15 PLN02193 nitrile-specifier pro 98.8 7.4E-07 1.6E-11 87.0 22.0 218 120-350 194-419 (470)
16 PRK14131 N-acetylneuraminic ac 98.8 1.2E-06 2.7E-11 83.0 21.0 175 106-293 35-260 (376)
17 PHA03098 kelch-like protein; P 98.8 5.7E-07 1.2E-11 89.5 18.9 224 121-372 266-495 (534)
18 PF00646 F-box: F-box domain; 98.8 1.4E-09 3.1E-14 70.5 0.1 43 2-44 4-46 (48)
19 PHA02790 Kelch-like protein; P 98.7 9.3E-07 2E-11 86.5 18.4 168 174-373 285-455 (480)
20 PLN02153 epithiospecifier prot 98.7 6.1E-06 1.3E-10 77.3 23.0 163 119-291 101-294 (341)
21 PLN02193 nitrile-specifier pro 98.7 8.8E-06 1.9E-10 79.5 24.2 228 120-373 138-386 (470)
22 smart00256 FBOX A Receptor for 98.7 5.1E-09 1.1E-13 65.3 0.4 39 4-42 1-39 (41)
23 PRK14131 N-acetylneuraminic ac 98.6 3.6E-05 7.9E-10 73.1 24.4 158 176-345 189-373 (376)
24 TIGR03547 muta_rot_YjhT mutatr 98.5 4.8E-05 1E-09 71.4 22.4 117 176-293 168-310 (346)
25 TIGR03548 mutarot_permut cycli 98.4 3.1E-05 6.6E-10 72.0 19.8 139 119-271 88-233 (323)
26 KOG4693 Uncharacterized conser 98.0 0.00033 7.2E-09 60.7 15.0 230 106-353 31-288 (392)
27 KOG1230 Protein containing rep 97.7 0.0024 5.3E-08 58.8 15.5 221 119-352 98-351 (521)
28 KOG4693 Uncharacterized conser 97.5 0.0036 7.9E-08 54.4 13.3 156 119-290 105-285 (392)
29 KOG0281 Beta-TrCP (transducin 97.5 0.0032 7E-08 56.6 12.8 44 1-44 75-122 (499)
30 KOG0379 Kelch repeat-containin 97.4 0.021 4.6E-07 56.0 19.4 173 109-292 123-312 (482)
31 KOG1230 Protein containing rep 97.3 0.038 8.2E-07 51.2 18.1 170 175-350 97-289 (521)
32 KOG0379 Kelch repeat-containin 97.3 0.057 1.2E-06 53.0 20.4 214 120-352 89-312 (482)
33 KOG2120 SCF ubiquitin ligase, 97.0 0.0002 4.4E-09 63.4 0.5 39 2-40 99-137 (419)
34 KOG2997 F-box protein FBX9 [Ge 96.5 0.00072 1.6E-08 60.2 0.5 45 1-45 107-156 (366)
35 PF13964 Kelch_6: Kelch motif 96.3 0.01 2.3E-07 38.2 4.9 41 204-244 6-47 (50)
36 PF01344 Kelch_1: Kelch motif; 95.6 0.032 7E-07 35.2 4.6 37 205-241 7-43 (47)
37 PF13360 PQQ_2: PQQ-like domai 94.5 3 6.4E-05 36.3 17.2 187 108-345 35-235 (238)
38 KOG0274 Cdc4 and related F-box 94.3 4.7 0.0001 40.1 18.1 42 1-42 108-149 (537)
39 PF07646 Kelch_2: Kelch motif; 94.1 0.16 3.5E-06 32.4 5.0 40 204-243 6-47 (49)
40 PF02191 OLF: Olfactomedin-lik 93.8 4.6 9.9E-05 35.9 15.5 126 203-351 72-213 (250)
41 PF08450 SGL: SMP-30/Gluconola 91.8 8.6 0.00019 33.8 22.8 200 106-351 8-223 (246)
42 PF01344 Kelch_1: Kelch motif; 91.6 0.59 1.3E-05 29.2 5.0 35 161-196 13-47 (47)
43 PF13418 Kelch_4: Galactose ox 91.6 0.3 6.5E-06 31.0 3.6 37 205-241 7-44 (49)
44 PF07250 Glyoxal_oxid_N: Glyox 91.5 9.5 0.00021 33.7 13.9 171 175-372 45-226 (243)
45 KOG2055 WD40 repeat protein [G 90.4 7.2 0.00016 37.1 12.5 98 226-346 280-380 (514)
46 COG3055 Uncharacterized protei 90.2 0.87 1.9E-05 41.8 6.4 114 175-293 112-267 (381)
47 PF07893 DUF1668: Protein of u 90.1 16 0.00036 34.1 15.4 131 103-248 70-224 (342)
48 PF13964 Kelch_6: Kelch motif 89.2 0.61 1.3E-05 29.8 3.5 23 173-196 25-47 (50)
49 KOG4341 F-box protein containi 88.8 0.14 3E-06 47.9 0.2 37 3-39 74-110 (483)
50 PF02897 Peptidase_S9_N: Proly 88.6 23 0.00051 33.8 19.8 153 176-349 252-412 (414)
51 PF07893 DUF1668: Protein of u 88.0 14 0.00031 34.5 13.1 86 177-270 200-297 (342)
52 COG4946 Uncharacterized protei 87.9 27 0.00058 33.7 15.6 143 175-349 286-439 (668)
53 smart00284 OLF Olfactomedin-li 87.3 21 0.00045 31.8 14.8 125 203-350 77-217 (255)
54 COG2706 3-carboxymuconate cycl 86.4 27 0.00059 32.2 16.1 112 227-352 168-287 (346)
55 KOG1274 WD40 repeat protein [G 86.3 46 0.00099 34.7 19.7 70 261-345 149-223 (933)
56 PF10282 Lactonase: Lactonase, 86.1 29 0.00063 32.4 17.3 119 209-350 154-286 (345)
57 PF07762 DUF1618: Protein of u 86.0 6.7 0.00014 30.9 8.5 67 227-293 7-98 (131)
58 PLN02772 guanylate kinase 85.3 6.9 0.00015 37.1 9.3 76 203-283 28-107 (398)
59 PF13415 Kelch_3: Galactose ox 85.0 3.4 7.4E-05 26.1 5.2 39 209-247 1-41 (49)
60 smart00612 Kelch Kelch domain. 84.7 3.1 6.6E-05 25.5 4.9 34 212-246 2-36 (47)
61 TIGR01640 F_box_assoc_1 F-box 84.7 26 0.00056 30.4 13.6 120 207-347 3-132 (230)
62 smart00612 Kelch Kelch domain. 84.7 2 4.4E-05 26.4 4.0 23 174-197 13-35 (47)
63 PF13418 Kelch_4: Galactose ox 84.3 1.8 3.8E-05 27.4 3.6 22 174-196 27-48 (49)
64 PRK11028 6-phosphogluconolacto 84.1 34 0.00074 31.4 15.6 137 175-341 11-157 (330)
65 TIGR03866 PQQ_ABC_repeats PQQ- 83.6 31 0.00068 30.6 21.6 187 117-345 51-242 (300)
66 COG4257 Vgb Streptogramin lyas 82.8 34 0.00073 30.8 11.8 126 102-248 192-319 (353)
67 KOG4152 Host cell transcriptio 82.6 32 0.00069 33.6 12.4 161 119-289 57-246 (830)
68 PRK11138 outer membrane biogen 82.2 47 0.001 31.6 18.0 30 204-240 251-282 (394)
69 PF06433 Me-amine-dh_H: Methyl 81.3 38 0.00082 31.5 12.2 122 204-347 188-327 (342)
70 KOG0310 Conserved WD40 repeat- 80.9 51 0.0011 31.7 13.0 195 125-366 8-207 (487)
71 PF07646 Kelch_2: Kelch motif; 78.6 3.9 8.5E-05 25.8 3.7 21 172-192 26-46 (49)
72 PF08450 SGL: SMP-30/Gluconola 74.7 58 0.0013 28.5 15.1 152 150-340 4-164 (246)
73 PF13415 Kelch_3: Galactose ox 74.4 3.9 8.5E-05 25.8 2.8 23 119-141 19-41 (49)
74 COG3055 Uncharacterized protei 72.4 16 0.00034 33.9 7.0 79 186-270 70-155 (381)
75 PF13360 PQQ_2: PQQ-like domai 69.2 73 0.0016 27.3 13.7 136 176-345 3-145 (238)
76 TIGR02658 TTQ_MADH_Hv methylam 68.6 1.1E+02 0.0023 28.9 12.8 122 206-353 15-149 (352)
77 KOG0319 WD40-repeat-containing 68.3 50 0.0011 33.6 10.0 95 227-347 41-142 (775)
78 PRK05137 tolB translocation pr 67.2 1.2E+02 0.0027 29.2 13.0 122 207-349 163-286 (435)
79 PF12458 DUF3686: ATPase invol 66.4 36 0.00079 32.4 8.2 135 109-282 238-384 (448)
80 cd01206 Homer Homer type EVH1 66.2 16 0.00035 27.6 4.8 40 119-166 11-51 (111)
81 KOG0645 WD40 repeat protein [G 65.6 1E+02 0.0022 27.6 18.8 150 175-354 36-195 (312)
82 KOG0289 mRNA splicing factor [ 65.4 1.3E+02 0.0028 28.8 19.1 116 205-349 354-470 (506)
83 KOG0316 Conserved WD40 repeat- 65.2 97 0.0021 27.2 13.5 186 109-345 28-218 (307)
84 KOG0294 WD40 repeat-containing 65.0 1.1E+02 0.0024 28.0 10.6 112 204-345 47-162 (362)
85 KOG0647 mRNA export protein (c 64.9 57 0.0012 29.6 8.7 73 262-353 40-114 (347)
86 PF10282 Lactonase: Lactonase, 62.2 1.4E+02 0.0029 27.9 26.1 174 145-349 143-332 (345)
87 KOG0645 WD40 repeat protein [G 61.7 1.2E+02 0.0026 27.2 10.9 77 262-355 27-106 (312)
88 KOG2106 Uncharacterized conser 61.1 1.7E+02 0.0037 28.7 21.8 68 274-366 390-458 (626)
89 KOG3881 Uncharacterized conser 60.8 1.5E+02 0.0033 27.9 15.9 38 304-352 295-332 (412)
90 KOG0293 WD40 repeat-containing 60.3 30 0.00064 32.7 6.4 92 254-366 398-493 (519)
91 PRK00178 tolB translocation pr 60.1 1.6E+02 0.0036 28.2 20.6 189 118-349 222-414 (430)
92 cd01207 Ena-Vasp Enabled-VASP- 59.7 27 0.00059 26.6 5.2 43 119-166 9-51 (111)
93 KOG0291 WD40-repeat-containing 58.3 2.3E+02 0.005 29.3 21.1 112 205-345 440-555 (893)
94 PLN00181 protein SPA1-RELATED; 58.3 2.5E+02 0.0054 29.7 23.8 183 111-342 547-740 (793)
95 PF13013 F-box-like_2: F-box-l 55.7 3.7 7.9E-05 31.3 -0.1 28 2-29 23-50 (109)
96 KOG2437 Muskelin [Signal trans 55.1 24 0.00053 34.3 5.1 119 121-244 231-364 (723)
97 smart00564 PQQ beta-propeller 52.5 36 0.00078 18.9 3.9 24 311-345 6-29 (33)
98 PF05096 Glu_cyclase_2: Glutam 52.1 1.8E+02 0.0038 26.1 15.7 146 173-350 65-213 (264)
99 KOG2321 WD40 repeat protein [G 51.7 1.7E+02 0.0037 29.2 10.1 103 228-349 157-266 (703)
100 PRK11138 outer membrane biogen 50.8 2.2E+02 0.0049 26.9 18.6 186 108-344 119-316 (394)
101 PRK11028 6-phosphogluconolacto 50.5 2E+02 0.0044 26.3 22.1 113 209-341 136-259 (330)
102 TIGR03300 assembly_YfgL outer 50.0 2.2E+02 0.0048 26.6 21.1 108 204-350 236-348 (377)
103 PF02239 Cytochrom_D1: Cytochr 49.3 2.4E+02 0.0051 26.7 12.9 99 227-349 17-117 (369)
104 PF01011 PQQ: PQQ enzyme repea 49.1 45 0.00097 19.6 4.0 17 329-345 7-23 (38)
105 PRK04792 tolB translocation pr 48.7 2.6E+02 0.0057 27.1 21.0 188 118-349 241-433 (448)
106 COG4257 Vgb Streptogramin lyas 48.6 2.1E+02 0.0046 25.9 17.3 211 106-350 69-314 (353)
107 KOG2502 Tub family proteins [G 46.8 11 0.00024 34.6 1.5 36 2-37 46-89 (355)
108 PRK05137 tolB translocation pr 46.3 2.8E+02 0.0061 26.7 20.5 193 118-349 225-420 (435)
109 KOG0305 Anaphase promoting com 45.8 3.1E+02 0.0067 27.1 15.9 193 107-345 186-381 (484)
110 PF13570 PQQ_3: PQQ-like domai 45.6 41 0.00088 19.9 3.5 21 310-341 20-40 (40)
111 KOG0283 WD40 repeat-containing 45.4 1.3E+02 0.0027 31.1 8.6 56 275-351 433-492 (712)
112 TIGR03300 assembly_YfgL outer 43.9 2.8E+02 0.006 26.0 19.0 186 108-344 104-301 (377)
113 TIGR03866 PQQ_ABC_repeats PQQ- 41.7 2.4E+02 0.0053 24.7 21.5 183 117-345 9-192 (300)
114 KOG1912 WD40 repeat protein [G 41.4 4.4E+02 0.0096 27.6 11.7 53 226-283 252-305 (1062)
115 PF08268 FBA_3: F-box associat 40.9 88 0.0019 24.3 5.7 42 330-372 18-62 (129)
116 TIGR02276 beta_rpt_yvtn 40-res 39.8 79 0.0017 18.5 5.9 31 310-350 2-32 (42)
117 TIGR02800 propeller_TolB tol-p 39.3 3.4E+02 0.0073 25.7 19.7 188 119-349 170-362 (417)
118 KOG0647 mRNA export protein (c 38.6 3.1E+02 0.0068 25.1 13.7 61 227-293 95-155 (347)
119 PRK04922 tolB translocation pr 38.0 3.8E+02 0.0082 25.8 21.1 190 118-349 227-419 (433)
120 TIGR03074 PQQ_membr_DH membran 36.4 5.4E+02 0.012 27.2 12.1 31 203-240 188-220 (764)
121 KOG1408 WD40 repeat protein [F 36.4 5.1E+02 0.011 26.9 14.9 34 301-345 461-494 (1080)
122 PF12217 End_beta_propel: Cata 36.2 2.7E+02 0.0058 25.0 8.1 61 207-270 198-258 (367)
123 KOG2714 SETA binding protein S 36.1 4.1E+02 0.0088 25.7 12.5 159 120-283 246-460 (465)
124 PF03178 CPSF_A: CPSF A subuni 35.7 3.5E+02 0.0075 24.7 11.9 77 254-351 91-169 (321)
125 KOG0295 WD40 repeat-containing 35.7 3.2E+02 0.007 25.7 8.9 66 262-345 304-369 (406)
126 KOG0293 WD40 repeat-containing 35.3 74 0.0016 30.2 4.9 63 261-345 323-389 (519)
127 KOG0300 WD40 repeat-containing 32.7 1.8E+02 0.0038 26.8 6.7 58 275-349 379-436 (481)
128 KOG4378 Nuclear protein COP1 [ 32.3 1.4E+02 0.003 29.2 6.3 52 275-345 188-244 (673)
129 KOG4547 WD40 repeat-containing 31.5 5.4E+02 0.012 25.7 13.7 115 227-366 81-195 (541)
130 PF05096 Glu_cyclase_2: Glutam 30.7 4E+02 0.0086 23.9 13.5 114 208-351 54-168 (264)
131 PF03088 Str_synth: Strictosid 30.6 63 0.0014 23.6 3.0 19 330-349 35-53 (89)
132 KOG0286 G-protein beta subunit 30.4 4.3E+02 0.0092 24.2 19.1 184 118-345 76-264 (343)
133 KOG0649 WD40 repeat protein [G 30.1 4E+02 0.0086 23.7 12.8 106 210-345 127-240 (325)
134 COG1520 FOG: WD40-like repeat 29.2 4.8E+02 0.01 24.4 14.7 136 177-345 36-176 (370)
135 PF14157 YmzC: YmzC-like prote 28.7 97 0.0021 20.9 3.3 19 330-349 39-57 (63)
136 KOG0315 G-protein beta subunit 28.6 4.3E+02 0.0093 23.6 17.9 207 111-365 12-225 (311)
137 KOG0271 Notchless-like WD40 re 28.6 1.9E+02 0.0042 27.3 6.3 54 275-345 138-192 (480)
138 PF14339 DUF4394: Domain of un 27.8 1.9E+02 0.0041 25.4 5.9 55 108-165 37-93 (236)
139 KOG0266 WD40 repeat-containing 27.4 5.8E+02 0.013 24.8 11.1 69 260-345 213-281 (456)
140 KOG0639 Transducin-like enhanc 27.4 3.3E+02 0.0071 26.9 7.8 72 258-345 473-544 (705)
141 KOG0639 Transducin-like enhanc 26.8 2.2E+02 0.0047 28.0 6.5 50 228-283 489-540 (705)
142 KOG3926 F-box proteins [Amino 26.7 32 0.00068 30.7 1.0 39 2-40 203-242 (332)
143 KOG0265 U5 snRNP-specific prot 26.7 3.7E+02 0.008 24.6 7.6 62 261-345 58-125 (338)
144 PF07569 Hira: TUP1-like enhan 26.6 4.2E+02 0.0091 22.9 9.0 81 254-349 14-103 (219)
145 KOG2048 WD40 repeat protein [G 25.8 4.4E+02 0.0095 26.9 8.6 77 254-345 433-510 (691)
146 PRK04043 tolB translocation pr 25.5 6.1E+02 0.013 24.4 22.2 189 118-350 212-409 (419)
147 PTZ00420 coronin; Provisional 25.5 7.2E+02 0.016 25.2 23.4 196 117-349 95-301 (568)
148 PF07861 WND: WisP family N-Te 25.4 1E+02 0.0022 25.8 3.6 34 100-133 31-64 (263)
149 PF00568 WH1: WH1 domain; Int 25.3 2.7E+02 0.0058 21.0 5.9 39 119-166 16-55 (111)
150 KOG2096 WD40 repeat protein [G 25.0 5.6E+02 0.012 23.8 11.3 35 305-351 193-227 (420)
151 PTZ00420 coronin; Provisional 24.0 5.9E+02 0.013 25.8 9.5 54 275-345 149-202 (568)
152 PF06058 DCP1: Dcp1-like decap 23.3 1.3E+02 0.0028 23.4 3.8 23 330-353 27-49 (122)
153 KOG1036 Mitotic spindle checkp 23.1 5.9E+02 0.013 23.4 16.3 94 226-345 75-168 (323)
154 KOG0301 Phospholipase A2-activ 23.0 8.5E+02 0.018 25.1 12.1 61 259-340 228-288 (745)
155 KOG0640 mRNA cleavage stimulat 22.9 6.1E+02 0.013 23.4 12.4 187 146-366 217-407 (430)
156 KOG0316 Conserved WD40 repeat- 22.9 4.5E+02 0.0097 23.3 7.1 68 259-345 26-94 (307)
157 KOG4378 Nuclear protein COP1 [ 22.5 6.7E+02 0.014 24.8 8.8 51 303-366 254-304 (673)
158 PF07569 Hira: TUP1-like enhan 22.0 5.2E+02 0.011 22.3 8.1 82 100-192 13-103 (219)
159 KOG0266 WD40 repeat-containing 21.9 7.4E+02 0.016 24.1 20.8 194 107-345 168-369 (456)
160 PLN02919 haloacid dehalogenase 21.9 1.1E+03 0.024 26.1 25.0 73 259-344 812-892 (1057)
161 TIGR02800 propeller_TolB tol-p 21.0 7E+02 0.015 23.5 19.9 189 119-349 214-405 (417)
162 PF06881 Elongin_A: RNA polyme 21.0 62 0.0014 24.5 1.6 28 1-28 4-31 (109)
163 KOG0291 WD40-repeat-containing 20.4 1E+03 0.022 25.0 14.0 92 261-371 403-497 (893)
164 KOG0292 Vesicle coat complex C 20.0 1.1E+03 0.024 25.4 10.6 100 250-366 249-376 (1202)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.5e-34 Score=255.40 Aligned_cols=224 Identities=25% Similarity=0.404 Sum_probs=165.8
Q ss_pred eecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 105 IDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
++|||||||+... ..++||||+||+++.||+++...........+||||+.+++||||++...... .....++||+++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeC
Confidence 4799999999875 78999999999999999776532111222689999999999999999764321 245789999999
Q ss_pred CCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEeCCe
Q 043816 185 SNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNFSGC 263 (378)
Q Consensus 185 t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~~G~ 263 (378)
+++||.+. ..+........+|++||++||++..... .....|++||+++|+|+ .+++|........ ...|++++|+
T Consensus 79 ~~~Wr~~~-~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~-~~~L~~~~G~ 155 (230)
T TIGR01640 79 SNSWRTIE-CSPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVD-YLSLINYKGK 155 (230)
T ss_pred CCCccccc-cCCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcccccccc-ceEEEEECCE
Confidence 99999998 3333222233499999999999976432 11137999999999999 5899976542122 5789999999
Q ss_pred EEEEEecCCCCcEEEEEEcC----ceeeeEEEecCcc-ccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 264 LYFSCFCDYPEPVDIWIMKE----SWTKVFSFAGGVF-GIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~----~W~~~~~i~~~~~-~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
|+++........++||+|++ +|++.++|+.... .......+.++..+|++++... + .....++.||
T Consensus 156 L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~-----~----~~~~~~~~y~ 226 (230)
T TIGR01640 156 LAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE-----D----ENPFYIFYYN 226 (230)
T ss_pred EEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC-----C----CCceEEEEEe
Confidence 99998865434799999997 7999999986221 1112256788888887777661 0 1133499999
Q ss_pred CCCC
Q 043816 339 LQNQ 342 (378)
Q Consensus 339 ~~t~ 342 (378)
++++
T Consensus 227 ~~~~ 230 (230)
T TIGR01640 227 VGEN 230 (230)
T ss_pred ccCC
Confidence 9986
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.69 E-value=3.1e-15 Score=124.63 Aligned_cols=152 Identities=24% Similarity=0.470 Sum_probs=103.4
Q ss_pred ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEc
Q 043816 205 GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMK 282 (378)
Q Consensus 205 ~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~ 282 (378)
+|++||.+||++...... ....|++||+++|+| ..+++|........ ...|++. +|+||++........++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~-~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLPLPFCNDDDDD-SVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCC-CceEEEEEeccccccCCEECCCCccCccCC-EEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 699999999999876532 112799999999999 88999987763234 7788554 6799999876665579999999
Q ss_pred C------ceeeeEEEecCcccccee---eEEEEEeecCCEEEEeeccCCCccccccC-CcEEEEEECCCCeEEEEEEEec
Q 043816 283 E------SWTKVFSFAGGVFGIFTY---AKALAYSKSGDKVLVDKFLYDEDEDEGIN-KWELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 283 ~------~W~~~~~i~~~~~~~~~~---~~~~~~~~~g~~vl~~~~~~~~~~~~~~~-~~~l~~yd~~t~~~~~~v~~~~ 352 (378)
+ +|++.++|+......... ...+.+..++++++... . + .... ...++.|+ +++..+ ++.+..
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~-~---~--~~~~~~~~i~i~g-~~~~~~-~~~~~~ 150 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCD-K---E--TQREEKNKIYIVG-EDGKFI-EVDIED 150 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEc-C---C--CCccceeEEEEEc-CCCEEE-Eccccc
Confidence 3 899999999733322211 22233444444444442 1 0 0001 15788898 888999 888744
Q ss_pred cCCCceeEEEEEec
Q 043816 353 VPQGCRYTMIYVDS 366 (378)
Q Consensus 353 ~~~~~~~~~~y~~s 366 (378)
....+..++.|+||
T Consensus 151 ~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 151 KSSCWPSICNYVPS 164 (164)
T ss_pred CCCCCCCEEEECCC
Confidence 33223678899987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.62 E-value=2e-14 Score=114.77 Aligned_cols=110 Identities=23% Similarity=0.427 Sum_probs=84.7
Q ss_pred ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCC--CcEEEEEEc
Q 043816 205 GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYP--EPVDIWIMK 282 (378)
Q Consensus 205 ~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~--~~i~iW~l~ 282 (378)
|+++||++||++... ......|++||+++|+|+.|++|........ ...|.+++|+|+++...... ..++||+|+
T Consensus 1 gicinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~-~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDC-SSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccC-ccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 689999999999882 2346789999999999999999922222123 78899999999999876643 369999999
Q ss_pred C----ceeeeEEEecC---ccccceeeEEEEEeecCCEEEEe
Q 043816 283 E----SWTKVFSFAGG---VFGIFTYAKALAYSKSGDKVLVD 317 (378)
Q Consensus 283 ~----~W~~~~~i~~~---~~~~~~~~~~~~~~~~g~~vl~~ 317 (378)
| +|++.+.+-+. .........+.++.++|++|+..
T Consensus 78 D~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~~ 119 (129)
T PF08268_consen 78 DYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFAS 119 (129)
T ss_pred ccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEEE
Confidence 8 89988664431 12222577889999999998883
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.56 E-value=2.4e-12 Score=118.24 Aligned_cols=320 Identities=12% Similarity=0.102 Sum_probs=161.7
Q ss_pred CCCcHHHHHHHHhcCC-hhchheeeeccccchhhccChhHHHHHhhcccCCCCceEEEEec-CC-CCccc--cccCCccc
Q 043816 2 ERLPRDLNMNILSRLS-VKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSY-TP-APMIS--CSRYGQGK 76 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp-~~sl~r~~~VcK~W~~~i~~p~F~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~ 76 (378)
++||+|||..|..||| ..++.|+|+|||+||+.+.... + ..+ .+++++++... .| .+..+ |.-.....
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNP--FRTRPLILFNPINPSETLTDDRSYISRPGA 77 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCC--cccccccccCcccCCCCccccccccccccc
Confidence 5799999999999997 8899999999999999876311 0 000 01112222211 00 01000 00000000
Q ss_pred EEEecCCCCCcceeecCCCCCCCCCeeEeecccceEEeecC---CceEEEEcCCCcceeecCCCCCCCCCCCc----eee
Q 043816 77 IFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNG---ENDIALWNPSTKKHVLLPKFWSDFDDYAD----LVD 149 (378)
Q Consensus 77 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~Gll~~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~----~~~ 149 (378)
+.+ . .....+.. .-++..|+|.-... ...+.+.||+++....+|+-...-..... ..+
T Consensus 78 ~ls----~-~~~~r~~~----------~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y 142 (373)
T PLN03215 78 FLS----R-AAFFRVTL----------SSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAY 142 (373)
T ss_pred eee----e-eEEEEeec----------CCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceE
Confidence 000 0 00001100 01356888877653 36899999999997777643221111000 000
Q ss_pred EE-eeeCC---CCCEEEEEEEEec-CCCCcccEEEEEEc------CCCceEEeeccCCccccCCCCceEECCeeEEEEEe
Q 043816 150 GF-GYDAV---SDDYKVVRLIQFG-RGKVEYTEIAVYSL------KSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLN 218 (378)
Q Consensus 150 ~l-g~d~~---~~~ykVv~~~~~~-~~~~~~~~~~vyss------~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~ 218 (378)
.+ +.+.. ...|+-+.+.... .+......+-|+.. ..++|..++ . .......-|+++|.+|.+...
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~-~---~~~~~~DIi~~kGkfYAvD~~ 218 (373)
T PLN03215 143 QVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALK-Q---MGYHFSDIIVHKGQTYALDSI 218 (373)
T ss_pred EEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEcc-C---CCceeeEEEEECCEEEEEcCC
Confidence 01 11100 0113111111111 11111122222222 247888776 2 122234589999999998543
Q ss_pred CCCCCCCCEEEEEECCCceEeeecCCCC--CCC-CCCCeeEEEEeCCeEEEEEecC---------------CCCcEEEEE
Q 043816 219 EPEGYNGDLIVAFDLKSEEFFEVPLPHL--ENR-DSGNLMYMGNFSGCLYFSCFCD---------------YPEPVDIWI 280 (378)
Q Consensus 219 ~~~~~~~~~il~fD~~~~~~~~i~~P~~--~~~-~~~~~~~l~~~~G~L~l~~~~~---------------~~~~i~iW~ 280 (378)
+ .+.++|..-+ .+.+..+.. ... ..+....|++..|.|++|.... .+..++||.
T Consensus 219 G-------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfk 290 (373)
T PLN03215 219 G-------IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYK 290 (373)
T ss_pred C-------eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEE
Confidence 3 3777774322 122211110 000 0112677999999999997631 123689999
Q ss_pred EcC---ceeeeEEEecC-cc-ccceeeEEEE--E-eecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEec
Q 043816 281 MKE---SWTKVFSFAGG-VF-GIFTYAKALA--Y-SKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 281 l~~---~W~~~~~i~~~-~~-~~~~~~~~~~--~-~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~ 352 (378)
++. .|+++..++.. .+ +........+ . .-.++.|++. .+....+||++.++.. .+...-
T Consensus 291 lD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt------------dd~~~~v~~~~dg~~~-~~~~~~ 357 (373)
T PLN03215 291 FDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT------------EDTMPKVFKLDNGNGS-SIETTI 357 (373)
T ss_pred EcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE------------CCCcceEEECCCCCcc-ceEeec
Confidence 986 89999988752 22 1111111111 0 1256778888 5677889999999977 655432
Q ss_pred cCCCceeEEEEEeccc
Q 043816 353 VPQGCRYTMIYVDSLV 368 (378)
Q Consensus 353 ~~~~~~~~~~y~~sl~ 368 (378)
.+.....+..|.+|++
T Consensus 358 ~~~~~~~~~~~~~~~~ 373 (373)
T PLN03215 358 SESSQSSFEMFVPSFL 373 (373)
T ss_pred CccccchheeeccccC
Confidence 2221134566777653
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.27 E-value=2.2e-10 Score=113.28 Aligned_cols=217 Identities=15% Similarity=0.184 Sum_probs=144.5
Q ss_pred eEeecccceEEeecC-------CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcc
Q 043816 103 PIIDTCNGLIALKNG-------ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEY 175 (378)
Q Consensus 103 ~~~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~ 175 (378)
.-+++-+|.|-+..+ .+.+..+||.+++|..+|++...+.. +|...-.+ ++.++.... +....
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-------~~v~~l~g--~iYavGG~d-g~~~l 395 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-------FGVAVLDG--KLYAVGGFD-GEKSL 395 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-------ceeEEECC--EEEEEeccc-ccccc
Confidence 345556776655542 13689999999999999999875432 22222122 333333222 23345
Q ss_pred cEEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCe
Q 043816 176 TEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNL 254 (378)
Q Consensus 176 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~ 254 (378)
..+|.|+..++.|..++ +++. ......++.++|.||-+++..........+.+||+.+++|+.+ +++.... .
T Consensus 396 ~svE~YDp~~~~W~~va-~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-----~ 468 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVA-PMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-----G 468 (571)
T ss_pred ccEEEecCCCCcccccC-CCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-----c
Confidence 68999999999999999 5555 2333347899999999998765433456799999999999987 5665554 5
Q ss_pred eEEEEeCCeEEEEEecCCC---CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccC
Q 043816 255 MYMGNFSGCLYFSCFCDYP---EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN 330 (378)
Q Consensus 255 ~~l~~~~G~L~l~~~~~~~---~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~ 330 (378)
..++..+|+||++++.+.. .+++.+..+. .|..+..|..+. ...++..-++.+++.- +.+....
T Consensus 469 ~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-------s~~g~~~~~~~ly~vG-----G~~~~~~ 536 (571)
T KOG4441|consen 469 FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-------SAVGVVVLGGKLYAVG-----GFDGNNN 536 (571)
T ss_pred ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-------ccccEEEECCEEEEEe-----cccCccc
Confidence 6699999999999987652 2455555555 899997666521 1233333344555551 1111123
Q ss_pred CcEEEEEECCCCeEEEEEE
Q 043816 331 KWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 331 ~~~l~~yd~~t~~~~~~v~ 349 (378)
-..+-.||+++++|+ .+.
T Consensus 537 l~~ve~ydp~~d~W~-~~~ 554 (571)
T KOG4441|consen 537 LNTVECYDPETDTWT-EVT 554 (571)
T ss_pred cceeEEcCCCCCcee-eCC
Confidence 457999999999999 543
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.20 E-value=2.3e-09 Score=106.35 Aligned_cols=213 Identities=9% Similarity=0.047 Sum_probs=133.4
Q ss_pred eecccceEEeecC-------CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccE
Q 043816 105 IDTCNGLIALKNG-------ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTE 177 (378)
Q Consensus 105 ~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~ 177 (378)
++..+|-|.+.++ .+.+..+||.+++|..+|+++..+.. .....+ .+ +|..+..... ......
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~--~~~~~~-----~g--~IYviGG~~~-~~~~~s 368 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR--FSLAVI-----DD--TIYAIGGQNG-TNVERT 368 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc--eeEEEE-----CC--EEEEECCcCC-CCCCce
Confidence 3445666655443 13588999999999999998864321 111111 22 4444433221 123457
Q ss_pred EEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCC-----------------CCCCEEEEEECCCceEee
Q 043816 178 IAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEG-----------------YNGDLIVAFDLKSEEFFE 240 (378)
Q Consensus 178 ~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~-----------------~~~~~il~fD~~~~~~~~ 240 (378)
++.|++.+++|+.++ ++|.... ...++.++|.||.+++..... .....+.+||+.+++|+.
T Consensus 369 ve~Ydp~~~~W~~~~-~mp~~r~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 369 IECYTMGDDKWKMLP-DMPIALS-SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred EEEEECCCCeEEECC-CCCcccc-cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 999999999999988 6664322 224678999999998754210 012459999999999998
Q ss_pred e-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCCC----CcEEEEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCE
Q 043816 241 V-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDYP----EPVDIWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDK 313 (378)
Q Consensus 241 i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~----~~i~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~ 313 (378)
+ ++|.... ...+++.+|+||++++.... ..++.+..+. .|+.+..|+.+.. .. .+++. + +.
T Consensus 447 v~~m~~~r~-----~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~----~~-~~~~~-~-~~ 514 (557)
T PHA02713 447 LPNFWTGTI-----RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS----AL-HTILH-D-NT 514 (557)
T ss_pred cCCCCcccc-----cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc----cc-eeEEE-C-CE
Confidence 7 4544433 55688999999999875421 1345555542 7999887775211 11 12222 3 34
Q ss_pred EEEeeccCCCccccccCC--cEEEEEECCCCeEEEEEEEec
Q 043816 314 VLVDKFLYDEDEDEGINK--WELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 314 vl~~~~~~~~~~~~~~~~--~~l~~yd~~t~~~~~~v~~~~ 352 (378)
|++.- ..+ ..+-+||++|++|+ .+.-+.
T Consensus 515 iyv~G----------g~~~~~~~e~yd~~~~~W~-~~~~~~ 544 (557)
T PHA02713 515 IMMLH----------CYESYMLQDTFNVYTYEWN-HICHQH 544 (557)
T ss_pred EEEEe----------eecceeehhhcCccccccc-chhhhc
Confidence 55541 122 26889999999999 765443
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.19 E-value=2.8e-09 Score=105.76 Aligned_cols=224 Identities=8% Similarity=0.030 Sum_probs=131.2
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccc
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYF 199 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 199 (378)
.+..+||.+++|..+++++..... .....+ .+ +|..+............++.|++.++.|..++ ++|..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~--~~~a~l-----~~--~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~-~m~~~- 341 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN--YASAIV-----DN--EIIIAGGYNFNNPSLNKVYKINIENKIHVELP-PMIKN- 341 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc--eEEEEE-----CC--EEEEEcCCCCCCCccceEEEEECCCCeEeeCC-CCcch-
Confidence 467789999999999988764321 111111 22 34444332111123467899999999999888 66542
Q ss_pred cCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC------
Q 043816 200 SHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY------ 272 (378)
Q Consensus 200 ~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~------ 272 (378)
......+.++|+||.+++.... .....+..||+.+++|+.+ ++|.... ....+.++|+|+++++...
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~-----~~~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALS-----SYGMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred hhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccc-----cccEEEECCEEEEEeCCCccccccc
Confidence 2223478899999999986432 2234599999999999987 4555543 5567788999999987542
Q ss_pred ---------------CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEE
Q 043816 273 ---------------PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDW 336 (378)
Q Consensus 273 ---------------~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~ 336 (378)
...++.+..+. .|+.+..|+.+. ....+++. +|.+.++.-+ +. .......+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-----~~~~~~~~-~~~IYv~GG~----~~-~~~~~~~ve~ 484 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-----IRPGVVSH-KDDIYVVCDI----KD-EKNVKTCIFR 484 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCccc-----ccCcEEEE-CCEEEEEeCC----CC-CCccceeEEE
Confidence 12344444444 899877665421 11112222 4444333310 00 0001135789
Q ss_pred EECCC-CeEEEEEEEeccCCCceeEEEEEeccccCCC
Q 043816 337 YDLQN-QRAAGQVTVHGVPQGCRYTMIYVDSLVSLAA 372 (378)
Q Consensus 337 yd~~t-~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~ 372 (378)
||+++ ++|+ .+.--........+..+...|.-+.+
T Consensus 485 Ydp~~~~~W~-~~~~m~~~r~~~~~~~~~~~iyv~Gg 520 (557)
T PHA02713 485 YNTNTYNGWE-LITTTESRLSALHTILHDNTIMMLHC 520 (557)
T ss_pred ecCCCCCCee-EccccCcccccceeEEECCEEEEEee
Confidence 99999 8999 76522211111344444444444443
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.09 E-value=1.5e-08 Score=100.79 Aligned_cols=200 Identities=12% Similarity=0.057 Sum_probs=122.2
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccc
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYF 199 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 199 (378)
.++.+||.|++|..+|+++..+.. .....+ .+ ++..+.... .......+++|+..+++|+..+ ++|..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~--~~~~~~-----~~--~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~-~lp~~- 379 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKN--PGVTVF-----NN--RIYVIGGIY-NSISLNTVESWKPGESKWREEP-PLIFP- 379 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccccc--ceEEEE-----CC--EEEEEeCCC-CCEecceEEEEcCCCCceeeCC-CcCcC-
Confidence 688999999999999988754321 111111 22 343333322 1223467899999999999988 66543
Q ss_pred cCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCC----
Q 043816 200 SHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPE---- 274 (378)
Q Consensus 200 ~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~---- 274 (378)
.....++.++|.+|.+++..........+..||+.+++|+.+ ++|.... ....+..+|+|+++++.....
T Consensus 380 r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~ 454 (534)
T PHA03098 380 RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-----GGCAIYHDGKIYVIGGISYIDNIKV 454 (534)
T ss_pred CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-----CceEEEECCEEEEECCccCCCCCcc
Confidence 222336788999999987543222235689999999999987 4554432 445677899999998754211
Q ss_pred cEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 275 PVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 275 ~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
.-.+|..+- .|..+..++.+. . . ...++. ++ .|++.- ..........+..||+++++|+ .+.
T Consensus 455 ~~~v~~yd~~~~~W~~~~~~~~~r---~-~-~~~~~~-~~-~iyv~G-----G~~~~~~~~~v~~yd~~~~~W~-~~~ 519 (534)
T PHA03098 455 YNIVESYNPVTNKWTELSSLNFPR---I-N-ASLCIF-NN-KIYVVG-----GDKYEYYINEIEVYDDKTNTWT-LFC 519 (534)
T ss_pred cceEEEecCCCCceeeCCCCCccc---c-c-ceEEEE-CC-EEEEEc-----CCcCCcccceeEEEeCCCCEEE-ecC
Confidence 112555543 899876544311 1 1 112222 44 444441 0000011357999999999999 654
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.03 E-value=2.2e-08 Score=99.29 Aligned_cols=201 Identities=13% Similarity=0.108 Sum_probs=133.5
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
+.+...||.+++|..+.+++.++. ..+...- .+ +|..+.....+......++.|++.++.|..++ ++...
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-----~~~~~~~--~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a-~M~~~ 370 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-----RVGVAVL--NG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA-PMNTK 370 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-----cccEEEE--CC--EEEEEccccCCCcccceEEEecCCCCceeccC-CccCc
Confidence 357788999999999999986543 1111211 12 44444433323345789999999999999987 44432
Q ss_pred ccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCCC----
Q 043816 199 FSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDYP---- 273 (378)
Q Consensus 199 ~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~---- 273 (378)
...-..+.++|.||.+++... ...-..+..||+.+++|..+ +++.... ....++.+|+||++++....
T Consensus 371 -R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r~-----~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 371 -RSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRRS-----GHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred -cccceeEEECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCccee-----eeEEEEECCEEEEEcCcCCCcccc
Confidence 222336899999999998873 23445699999999999988 4665332 67789999999999986432
Q ss_pred CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 274 EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 274 ~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
..++.+.-.. .|..+..|.... ....+++. + +.|+..- +-+.......+-.||+++++|. .+.
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R-----~~~g~a~~-~-~~iYvvG-----G~~~~~~~~~VE~ydp~~~~W~-~v~ 507 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRR-----SGFGVAVL-N-GKIYVVG-----GFDGTSALSSVERYDPETNQWT-MVA 507 (571)
T ss_pred ceEEEEcCCCCceeecCCccccc-----ccceEEEE-C-CEEEEEC-----CccCCCccceEEEEcCCCCcee-Ecc
Confidence 3566665555 899999888721 11113332 3 4555551 1000012345899999999999 876
No 10
>PLN02153 epithiospecifier protein
Probab=99.02 E-value=1.8e-07 Score=87.56 Aligned_cols=219 Identities=13% Similarity=0.022 Sum_probs=119.5
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc-
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY- 197 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~- 197 (378)
+.++++||.+++|..+|+....+. ....++......+ +|+.+..... ......+++|+..+++|+.++ .++.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~---~~~~~~~~~~~~~--~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~-~~~~~ 122 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPR---ISCLGVRMVAVGT--KLYIFGGRDE-KREFSDFYSYDTVKNEWTFLT-KLDEE 122 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCC---CccCceEEEEECC--EEEEECCCCC-CCccCcEEEEECCCCEEEEec-cCCCC
Confidence 368999999999999987543211 0111111111122 3444433211 112457899999999999887 4421
Q ss_pred --ccc-CCCCceEECCeeEEEEEeCCCC-----CCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEe
Q 043816 198 --YFS-HPRDGTFARGHVHWLVLNEPEG-----YNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCF 269 (378)
Q Consensus 198 --~~~-~~~~~v~~~G~lYwl~~~~~~~-----~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~ 269 (378)
... ....++..+|+||.+++..... ..-..+.+||+.+++|..++.+..... ......++..+|+++++..
T Consensus 123 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~-~r~~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 123 GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE-KRGGAGFAVVQGKIWVVYG 201 (341)
T ss_pred CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC-CCCcceEEEECCeEEEEec
Confidence 111 1223678899999998764321 011358899999999998754321110 1114557788999999865
Q ss_pred cCC-----------CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeecc-CCC-c--cccccCCcE
Q 043816 270 CDY-----------PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFL-YDE-D--EDEGINKWE 333 (378)
Q Consensus 270 ~~~-----------~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~-~~~-~--~~~~~~~~~ 333 (378)
... ...+.++.++. .|+++..... .+.-.......+. + +.|++.-.. ... + ...+.....
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~--~P~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~n~ 277 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA--KPSARSVFAHAVV-G-KYIIIFGGEVWPDLKGHLGPGTLSNE 277 (341)
T ss_pred cccccccCCccceecCceEEEEcCCCcEEeccccCC--CCCCcceeeeEEE-C-CEEEEECcccCCcccccccccccccc
Confidence 321 12455555555 8998865432 0001111112222 3 344444110 000 0 000011236
Q ss_pred EEEEECCCCeEEEEEEE
Q 043816 334 LDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 334 l~~yd~~t~~~~~~v~~ 350 (378)
++.||+++++|+ ++..
T Consensus 278 v~~~d~~~~~W~-~~~~ 293 (341)
T PLN02153 278 GYALDTETLVWE-KLGE 293 (341)
T ss_pred EEEEEcCccEEE-eccC
Confidence 899999999999 8763
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.01 E-value=4.1e-08 Score=96.00 Aligned_cols=187 Identities=9% Similarity=-0.076 Sum_probs=117.8
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
..+..+||.+++|..+|+++..+.. .... .. .+ +|..+.... ....++.|+..+++|..++ ++|..
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~--~~~v--~~---~~--~iYviGG~~----~~~sve~ydp~~n~W~~~~-~l~~~ 352 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLY--ASGV--PA---NN--KLYVVGGLP----NPTSVERWFHGDAAWVNMP-SLLKP 352 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhc--ceEE--EE---CC--EEEEECCcC----CCCceEEEECCCCeEEECC-CCCCC
Confidence 3577889999999999998764321 1111 11 22 333333221 1245899999999999988 66642
Q ss_pred ccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec-CCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEE
Q 043816 199 FSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP-LPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVD 277 (378)
Q Consensus 199 ~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~ 277 (378)
. ....++.++|.||.+++.... ...+..||+.+++|+.++ +|.... ....+..+|+|+++++ ..+
T Consensus 353 r-~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~-----~~~~~~~~~~IYv~GG-----~~e 418 (480)
T PHA02790 353 R-CNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHY-----KSCALVFGRRLFLVGR-----NAE 418 (480)
T ss_pred C-cccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccc-----cceEEEECCEEEEECC-----ceE
Confidence 2 223478999999999886432 235789999999999874 433332 4566789999999974 345
Q ss_pred EEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 278 IWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 278 iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
++..+. .|+.+..|+.+. .....++. +| .|++.- +.........+..||+++++|+
T Consensus 419 ~ydp~~~~W~~~~~m~~~r-----~~~~~~v~-~~-~IYviG-----G~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPR-----DNPELIIV-DN-KLLLIG-----GFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred EecCCCCcEeEcCCCCCCc-----cccEEEEE-CC-EEEEEC-----CcCCCcccceEEEEECCCCeEE
Confidence 565555 899887665411 11112222 44 445441 0000011246899999999998
No 12
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.94 E-value=2.5e-10 Score=73.65 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=37.6
Q ss_pred CCCCcHHHHHHHHhcCChhchheeeeccccchhhccChhHHHH
Q 043816 1 MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKT 43 (378)
Q Consensus 1 i~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~~ 43 (378)
|..||+|++.+||+.||++++.+++.|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 6789999999999999999999999999999999998866554
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.92 E-value=3.2e-07 Score=85.23 Aligned_cols=156 Identities=14% Similarity=0.157 Sum_probs=94.1
Q ss_pred eEEEE-cCCCc-ceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce----EEeec
Q 043816 120 DIALW-NPSTK-KHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS----RRIRV 193 (378)
Q Consensus 120 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W----~~~~~ 193 (378)
.+++. +|..+ +|..+++++..+.. . .+..+ .+ +|+.+.... .......++.|+..++.| +.++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~--~--~~~~~---~~--~lyviGG~~-~~~~~~~v~~~d~~~~~w~~~~~~~~- 108 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAY--G--ASVSV---EN--GIYYIGGSN-SSERFSSVYRITLDESKEELICETIG- 108 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccc--e--EEEEE---CC--EEEEEcCCC-CCCCceeEEEEEEcCCceeeeeeEcC-
Confidence 35555 45433 79988877654321 1 11121 12 344443322 122346788999999988 4444
Q ss_pred cCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec-CCCCCCCCCCCeeEEEEeCCeEEEEEecCC
Q 043816 194 DFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP-LPHLENRDSGNLMYMGNFSGCLYFSCFCDY 272 (378)
Q Consensus 194 ~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~ 272 (378)
++|.... ...++.++|+||.+++.... .....+.+||+.+++|+.++ +|..... ....+..+|+|+++++...
T Consensus 109 ~lp~~~~-~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~----~~~~~~~~~~iYv~GG~~~ 182 (323)
T TIGR03548 109 NLPFTFE-NGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRV----QPVCVKLQNELYVFGGGSN 182 (323)
T ss_pred CCCcCcc-CceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCC----cceEEEECCEEEEEcCCCC
Confidence 4553321 23367889999999875322 12346999999999999984 6643321 4556788999999988653
Q ss_pred CCcEEEEEEc--C-ceeeeEEEe
Q 043816 273 PEPVDIWIMK--E-SWTKVFSFA 292 (378)
Q Consensus 273 ~~~i~iW~l~--~-~W~~~~~i~ 292 (378)
....++|..+ . .|.++..+.
T Consensus 183 ~~~~~~~~yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 183 IAYTDGYKYSPKKNQWQKVADPT 205 (323)
T ss_pred ccccceEEEecCCCeeEECCCCC
Confidence 2233445554 3 898876553
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.91 E-value=6.3e-07 Score=84.13 Aligned_cols=174 Identities=10% Similarity=0.098 Sum_probs=101.7
Q ss_pred cccceEEeecC--CceEEEEc--CCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCC-----CcccE
Q 043816 107 TCNGLIALKNG--ENDIALWN--PSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGK-----VEYTE 177 (378)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~-----~~~~~ 177 (378)
..++-|-+..+ .+.+++.+ |.+++|..+|+++..... ......+ .+ +|..+....... .....
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~-~~~~~~~-----~~--~iYv~GG~~~~~~~~~~~~~~~ 86 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRN-QAVAAAI-----DG--KLYVFGGIGKANSEGSPQVFDD 86 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcc-cceEEEE-----CC--EEEEEeCCCCCCCCCcceeccc
Confidence 33555544332 24577777 478899999988732111 1111111 22 343333321100 12357
Q ss_pred EEEEEcCCCceEEeeccCCccccCCCCce-EECCeeEEEEEeCCCC---------------------------------C
Q 043816 178 IAVYSLKSNSSRRIRVDFPYYFSHPRDGT-FARGHVHWLVLNEPEG---------------------------------Y 223 (378)
Q Consensus 178 ~~vyss~t~~W~~~~~~~p~~~~~~~~~v-~~~G~lYwl~~~~~~~---------------------------------~ 223 (378)
++.|+..+++|+.++...|.. .....++ .++|+||.+++..... .
T Consensus 87 v~~Yd~~~~~W~~~~~~~p~~-~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 87 VYRYDPKKNSWQKLDTRSPVG-LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred EEEEECCCCEEecCCCCCCCc-ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 999999999999987222221 1111133 5899999998754210 0
Q ss_pred CCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC--CCcEEEEE--EcC---ceeeeEEEec
Q 043816 224 NGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY--PEPVDIWI--MKE---SWTKVFSFAG 293 (378)
Q Consensus 224 ~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~--~~~i~iW~--l~~---~W~~~~~i~~ 293 (378)
....+.+||+.+++|+.+ ++|..... ...++..+|+|+++.+... ....++|. ++. .|..+..|+.
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p~~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENPFLGTA----GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred ccceEEEEECCCCceeECccCCCCcCC----CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 014699999999999998 45543222 5567888999999987532 12344554 422 8998877754
No 15
>PLN02193 nitrile-specifier protein
Probab=98.84 E-value=7.4e-07 Score=86.96 Aligned_cols=218 Identities=10% Similarity=-0.033 Sum_probs=119.0
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc-
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY- 198 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~- 198 (378)
.++++||.+.+|..+|+....+.. ....+.+... .+ ++..+..... ......+++|++.+++|+.+. .++..
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~-~~~~~~~v~~--~~--~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~-~~~~~P 266 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHL-SCLGVRMVSI--GS--TLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLT-PVEEGP 266 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCC-cccceEEEEE--CC--EEEEECCCCC-CCCCccEEEEECCCCEEEEcC-cCCCCC
Confidence 589999999999988754321110 0111111111 12 3333332211 123457899999999999987 43211
Q ss_pred c-cCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEE
Q 043816 199 F-SHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVD 277 (378)
Q Consensus 199 ~-~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~ 277 (378)
. ......+..++.||.+++.... .....+.+||+.+++|+.++.|........ ...++..+|+++++........-+
T Consensus 267 ~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~-~~~~~~~~gkiyviGG~~g~~~~d 344 (470)
T PLN02193 267 TPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRG-GAGLEVVQGKVWVVYGFNGCEVDD 344 (470)
T ss_pred CCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCC-CcEEEEECCcEEEEECCCCCccCc
Confidence 1 1122356789999999876432 123458899999999998865432211012 456677899999998754322234
Q ss_pred EEEEc--C-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcc---ccccCCcEEEEEECCCCeEEEEEEE
Q 043816 278 IWIMK--E-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDE---DEGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 278 iW~l~--~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~---~~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
+|+++ . .|+++..+....... .....++. ++.++++.=....+.. ..+.....++.||++|++|+ ++..
T Consensus 345 v~~yD~~t~~W~~~~~~g~~P~~R--~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~-~~~~ 419 (470)
T PLN02193 345 VHYYDPVQDKWTQVETFGVRPSER--SVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE-RLDK 419 (470)
T ss_pred eEEEECCCCEEEEeccCCCCCCCc--ceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE-Eccc
Confidence 55554 4 899886553211111 11122222 3333433310000000 00001135899999999999 8763
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.78 E-value=1.2e-06 Score=83.02 Aligned_cols=175 Identities=10% Similarity=0.050 Sum_probs=101.4
Q ss_pred ecccceEEeecC--CceEEEEcCC--CcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecC-CC----Cccc
Q 043816 106 DTCNGLIALKNG--ENDIALWNPS--TKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGR-GK----VEYT 176 (378)
Q Consensus 106 ~s~~Gll~~~~~--~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~-~~----~~~~ 176 (378)
++.++-|.+..+ ...+++.++- +++|..+|+++..... ......+ .+. |..+..... .. ....
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~-~~~~v~~-----~~~--IYV~GG~~~~~~~~~~~~~~ 106 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE-QAVAAFI-----DGK--LYVFGGIGKTNSEGSPQVFD 106 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc-cceEEEE-----CCE--EEEEcCCCCCCCCCceeEcc
Confidence 334555544332 3456777664 6899999977632111 1111111 232 333322111 00 1235
Q ss_pred EEEEEEcCCCceEEeeccCCccccCCCCceE-ECCeeEEEEEeCCCC---------------------------------
Q 043816 177 EIAVYSLKSNSSRRIRVDFPYYFSHPRDGTF-ARGHVHWLVLNEPEG--------------------------------- 222 (378)
Q Consensus 177 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~-~~G~lYwl~~~~~~~--------------------------------- 222 (378)
.++.|+..+++|+.+....|... ....++. .+|.||.+++.....
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~-~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGL-AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcc-cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 79999999999999872122221 1112344 799999998754210
Q ss_pred CCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC--CCcEEEEEEc----C-ceeeeEEEec
Q 043816 223 YNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY--PEPVDIWIMK----E-SWTKVFSFAG 293 (378)
Q Consensus 223 ~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~--~~~i~iW~l~----~-~W~~~~~i~~ 293 (378)
.....+.+||+.+++|+.+ ++|..... ...++..+++|+++++... ....++|..+ . .|.++..|+.
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~~~p~~~~~----~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~ 260 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAGESPFLGTA----GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP 260 (376)
T ss_pred CcCceEEEEECCCCeeeECCcCCCCCCC----cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence 0124699999999999987 45542221 4567778999999987531 2355666442 2 8999887765
No 17
>PHA03098 kelch-like protein; Provisional
Probab=98.76 E-value=5.7e-07 Score=89.52 Aligned_cols=224 Identities=8% Similarity=0.032 Sum_probs=126.9
Q ss_pred EEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcccc
Q 043816 121 IALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFS 200 (378)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~ 200 (378)
+.-+|+.+++|..+++.+... ...... ..+ +++.+............+..|+..+++|..++ .+|.. .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~--~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~-R 333 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHYVY---CFGSVV-----LNN--VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELIYP-R 333 (534)
T ss_pred eeecchhhhhcccccCccccc---cceEEE-----ECC--EEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCCcc-c
Confidence 445688899999887655321 101111 122 33333322211223347899999999999887 55532 2
Q ss_pred CCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC----CCc
Q 043816 201 HPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY----PEP 275 (378)
Q Consensus 201 ~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~----~~~ 275 (378)
.....+.++|.+|.+++.... .....+..||+.+++|+.+ ++|.... ....+..+|+++++++... ...
T Consensus 334 ~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~-----~~~~~~~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 334 KNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRY-----NPCVVNVNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred ccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCc-----cceEEEECCEEEEECCcCCCCcccce
Confidence 223477889999999986532 1234588999999999987 4565443 4556788999999987432 134
Q ss_pred EEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEeccC
Q 043816 276 VDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVP 354 (378)
Q Consensus 276 i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~~ 354 (378)
+..+..+. .|.....++.+.. .... +..+ +.|++.-.....+ .......+..||+++++|+ ++.-....
T Consensus 408 v~~yd~~t~~W~~~~~~p~~r~-----~~~~-~~~~-~~iyv~GG~~~~~--~~~~~~~v~~yd~~~~~W~-~~~~~~~~ 477 (534)
T PHA03098 408 VECFSLNTNKWSKGSPLPISHY-----GGCA-IYHD-GKIYVIGGISYID--NIKVYNIVESYNPVTNKWT-ELSSLNFP 477 (534)
T ss_pred EEEEeCCCCeeeecCCCCcccc-----CceE-EEEC-CEEEEECCccCCC--CCcccceEEEecCCCCcee-eCCCCCcc
Confidence 55555555 8998765554211 1112 2223 4455541100000 0000234999999999999 76522211
Q ss_pred CCceeEEEEEeccccCCC
Q 043816 355 QGCRYTMIYVDSLVSLAA 372 (378)
Q Consensus 355 ~~~~~~~~y~~sl~~~~~ 372 (378)
......+.+...+.-+.+
T Consensus 478 r~~~~~~~~~~~iyv~GG 495 (534)
T PHA03098 478 RINASLCIFNNKIYVVGG 495 (534)
T ss_pred cccceEEEECCEEEEEcC
Confidence 111334444444544444
No 18
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.76 E-value=1.4e-09 Score=70.50 Aligned_cols=43 Identities=44% Similarity=0.529 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHhcCChhchheeeeccccchhhccChhHHHHH
Q 043816 2 ERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTH 44 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~~~ 44 (378)
.+||+|++.+||.+|+.+++.+++.|||+|++++.++.+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4799999999999999999999999999999999999987654
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=98.72 E-value=9.3e-07 Score=86.50 Aligned_cols=168 Identities=8% Similarity=-0.009 Sum_probs=111.4
Q ss_pred cccEEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCC
Q 043816 174 EYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSG 252 (378)
Q Consensus 174 ~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~ 252 (378)
....++.|++.+++|..++ +++.... ...++.++|.+|.+++.... ..+..||+.+++|..+ ++|....
T Consensus 285 ~~~~v~~Ydp~~~~W~~~~-~m~~~r~-~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~r~---- 354 (480)
T PHA02790 285 IHNNAIAVNYISNNWIPIP-PMNSPRL-YASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKPRC---- 354 (480)
T ss_pred cCCeEEEEECCCCEEEECC-CCCchhh-cceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCCCc----
Confidence 3457889999999999998 6654221 23367899999999986421 3488999999999987 4554443
Q ss_pred CeeEEEEeCCeEEEEEecCC-CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccC
Q 043816 253 NLMYMGNFSGCLYFSCFCDY-PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN 330 (378)
Q Consensus 253 ~~~~l~~~~G~L~l~~~~~~-~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~ 330 (378)
....++.+|+||++++... ...++.|..+. .|+.+..|+.+. . ....++ -++.|++.
T Consensus 355 -~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r---~--~~~~~~--~~~~IYv~------------- 413 (480)
T PHA02790 355 -NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH---Y--KSCALV--FGRRLFLV------------- 413 (480)
T ss_pred -ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc---c--cceEEE--ECCEEEEE-------------
Confidence 5678899999999988643 24677777666 999876665421 1 111222 23466666
Q ss_pred CcEEEEEECCCCeEEEEEEEeccCCCceeEEEEEeccccCCCC
Q 043816 331 KWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAAY 373 (378)
Q Consensus 331 ~~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~~ 373 (378)
++...+||+++++|+ .+.-............+...+.-+.+.
T Consensus 414 GG~~e~ydp~~~~W~-~~~~m~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 414 GRNAEFYCESSNTWT-LIDDPIYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred CCceEEecCCCCcEe-EcCCCCCCccccEEEEECCEEEEECCc
Confidence 134778999999999 765222222224555555555555543
No 20
>PLN02153 epithiospecifier protein
Probab=98.71 E-value=6.1e-06 Score=77.30 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=97.0
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCC-----CCcccEEEEEEcCCCceEEeec
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRG-----KVEYTEIAVYSLKSNSSRRIRV 193 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~-----~~~~~~~~vyss~t~~W~~~~~ 193 (378)
+.++++||.|++|..+++++................ .+ +++.+...... ......+++|+.++++|+.++
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~- 175 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--EN--HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP- 175 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CC--EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC-
Confidence 468999999999999986521100001111111111 22 33333322111 012347899999999999987
Q ss_pred cCCc--cccCCCCceEECCeeEEEEEeCCC-------CCCCCEEEEEECCCceEeeec----CCCCCCCCCCCeeEEEEe
Q 043816 194 DFPY--YFSHPRDGTFARGHVHWLVLNEPE-------GYNGDLIVAFDLKSEEFFEVP----LPHLENRDSGNLMYMGNF 260 (378)
Q Consensus 194 ~~p~--~~~~~~~~v~~~G~lYwl~~~~~~-------~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~l~~~ 260 (378)
.+.. ........+.++|++|.+++.... ......+.+||+.+++|+.+. +|.... ....+..
T Consensus 176 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~-----~~~~~~~ 250 (341)
T PLN02153 176 DPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS-----VFAHAVV 250 (341)
T ss_pred CCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc-----eeeeEEE
Confidence 3321 112222367899999998764310 011235899999999999874 344332 4556788
Q ss_pred CCeEEEEEecCC--------CC--cEEEEEEcC---ceeeeEEE
Q 043816 261 SGCLYFSCFCDY--------PE--PVDIWIMKE---SWTKVFSF 291 (378)
Q Consensus 261 ~G~L~l~~~~~~--------~~--~i~iW~l~~---~W~~~~~i 291 (378)
+++|+++++... .. .-++|.++- .|+.+...
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence 999999988521 11 127888865 89987644
No 21
>PLN02193 nitrile-specifier protein
Probab=98.69 E-value=8.8e-06 Score=79.49 Aligned_cols=228 Identities=13% Similarity=0.077 Sum_probs=124.8
Q ss_pred eEEEEcCCC----cceeecCCC---CCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCC-CcccEEEEEEcCCCceEEe
Q 043816 120 DIALWNPST----KKHVLLPKF---WSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGK-VEYTEIAVYSLKSNSSRRI 191 (378)
Q Consensus 120 ~~~V~NP~T----~~~~~LP~~---~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~-~~~~~~~vyss~t~~W~~~ 191 (378)
..++++|.| .+|..+++. |..+. . +..... .+ +|+.+....... .....+++|+.++++|..+
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~--~---h~~~~~--~~--~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~ 208 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRC--S---HGIAQV--GN--KIYSFGGEFTPNQPIDKHLYVFDLETRTWSIS 208 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCcc--c---cEEEEE--CC--EEEEECCcCCCCCCeeCcEEEEECCCCEEEeC
Confidence 477888877 789988763 22211 1 111111 12 333333221111 1234699999999999986
Q ss_pred ec--cCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec-C---CCCCCCCCCCeeEEEEeCCeEE
Q 043816 192 RV--DFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP-L---PHLENRDSGNLMYMGNFSGCLY 265 (378)
Q Consensus 192 ~~--~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~-~---P~~~~~~~~~~~~l~~~~G~L~ 265 (378)
.. ..|.........+.+++.||.+++.... .....+.+||+.+++|+.+. + |.... ...++..+++|+
T Consensus 209 ~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~-----~h~~~~~~~~iY 282 (470)
T PLN02193 209 PATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRS-----FHSMAADEENVY 282 (470)
T ss_pred CCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCcc-----ceEEEEECCEEE
Confidence 52 1221111122367889999999876432 12235889999999999874 3 32222 455677899999
Q ss_pred EEEecCCC---CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 266 FSCFCDYP---EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 266 l~~~~~~~---~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
++...... ..+..+.++. +|..+........ .+....+.+. ++.++++.-+ + +.....+..||+++
T Consensus 283 v~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~--~R~~~~~~~~-~gkiyviGG~----~---g~~~~dv~~yD~~t 352 (470)
T PLN02193 283 VFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFS--IRGGAGLEVV-QGKVWVVYGF----N---GCEVDDVHYYDPVQ 352 (470)
T ss_pred EECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCC--CCCCcEEEEE-CCcEEEEECC----C---CCccCceEEEECCC
Confidence 99876431 2344444445 8987643211101 1111222332 4554444410 0 01125699999999
Q ss_pred CeEEEEEEEec---cCCCceeEEEEEeccccCCCC
Q 043816 342 QRAAGQVTVHG---VPQGCRYTMIYVDSLVSLAAY 373 (378)
Q Consensus 342 ~~~~~~v~~~~---~~~~~~~~~~y~~sl~~~~~~ 373 (378)
++|+ ++...+ .......+..+...|+-+.+.
T Consensus 353 ~~W~-~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 353 DKWT-QVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CEEE-EeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 9999 876432 122223445555555555553
No 22
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.66 E-value=5.1e-09 Score=65.35 Aligned_cols=39 Identities=51% Similarity=0.646 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhcCChhchheeeeccccchhhccChhHHH
Q 043816 4 LPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVK 42 (378)
Q Consensus 4 LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~ 42 (378)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.58 E-value=3.6e-05 Score=73.05 Aligned_cols=158 Identities=13% Similarity=0.187 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCC--CCCCEEEEEECCCceEeee-cCCCCCCCC--
Q 043816 176 TEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEG--YNGDLIVAFDLKSEEFFEV-PLPHLENRD-- 250 (378)
Q Consensus 176 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~--~~~~~il~fD~~~~~~~~i-~~P~~~~~~-- 250 (378)
..+++|+..++.|+..+ .+|.........+.++|.||.+++..... ........+|+++.+|+.+ ++|......
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC
Confidence 57999999999999988 66643222233677899999999754211 1223355678899999887 466443210
Q ss_pred CC-CeeEEEEeCCeEEEEEecCCC--------------------CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEe
Q 043816 251 SG-NLMYMGNFSGCLYFSCFCDYP--------------------EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYS 308 (378)
Q Consensus 251 ~~-~~~~l~~~~G~L~l~~~~~~~--------------------~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~ 308 (378)
.. .....+..+|+|+++++.... ..++++..+. .|..+..|+.+. ... .++.
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r-----~~~-~av~ 341 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL-----AYG-VSVS 341 (376)
T ss_pred CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc-----cce-EEEE
Confidence 01 012246789999999875321 1245666666 898876665421 111 2333
Q ss_pred ecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 309 KSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 309 ~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
-++.++++.-. . .-+.....+..|+++++.+.
T Consensus 342 ~~~~iyv~GG~----~-~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 342 WNNGVLLIGGE----T-AGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred eCCEEEEEcCC----C-CCCcEeeeEEEEEEcCCEEE
Confidence 35555555510 0 00011236888888887766
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.49 E-value=4.8e-05 Score=71.43 Aligned_cols=117 Identities=15% Similarity=0.266 Sum_probs=75.6
Q ss_pred cEEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEE--EEEECCCceEeee-cCCCCCCC-CC
Q 043816 176 TEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLI--VAFDLKSEEFFEV-PLPHLENR-DS 251 (378)
Q Consensus 176 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~i--l~fD~~~~~~~~i-~~P~~~~~-~~ 251 (378)
..+++|++.+++|+.++ .+|.........+.++|+||.+++..........+ ..+|+.+++|+.+ ++|..... ..
T Consensus 168 ~~v~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECc-cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 57999999999999998 66643222233578899999999864321111224 3445577899886 45543210 00
Q ss_pred C-CeeEEEEeCCeEEEEEecCCC--------------------CcEEEEEEcC-ceeeeEEEec
Q 043816 252 G-NLMYMGNFSGCLYFSCFCDYP--------------------EPVDIWIMKE-SWTKVFSFAG 293 (378)
Q Consensus 252 ~-~~~~l~~~~G~L~l~~~~~~~--------------------~~i~iW~l~~-~W~~~~~i~~ 293 (378)
. .....+..+|+|+++++.... ..+++|..+. .|+.+..|+.
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence 1 023367789999999875310 2567888877 9998876664
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.45 E-value=3.1e-05 Score=72.00 Aligned_cols=139 Identities=7% Similarity=-0.117 Sum_probs=84.7
Q ss_pred ceEEEEcCCCcce----eecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeecc
Q 043816 119 NDIALWNPSTKKH----VLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVD 194 (378)
Q Consensus 119 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~ 194 (378)
+.++.+|+.+++| ..+|++|..... .... .+ .+ +|..+..... ......+++|+..++.|..++ .
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~--~~~~--~~---~~--~iYv~GG~~~-~~~~~~v~~yd~~~~~W~~~~-~ 156 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFEN--GSAC--YK---DG--TLYVGGGNRN-GKPSNKSYLFNLETQEWFELP-D 156 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccC--ceEE--EE---CC--EEEEEeCcCC-CccCceEEEEcCCCCCeeECC-C
Confidence 4688899999997 678877654321 1111 11 12 3444433211 123467999999999999988 5
Q ss_pred CCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecC-CCCCCC--CCCCeeEEEEeCCeEEEEEecC
Q 043816 195 FPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPL-PHLENR--DSGNLMYMGNFSGCLYFSCFCD 271 (378)
Q Consensus 195 ~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~-P~~~~~--~~~~~~~l~~~~G~L~l~~~~~ 271 (378)
+|.........+.++|.||.+++.... ....+.+||+++++|+.+.. +..... ... ...++..+|+|+++++..
T Consensus 157 ~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 157 FPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLG-AASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccc-eeEEEECCCEEEEECCcC
Confidence 554222222356899999999876422 12237899999999998742 211110 011 333455678999998754
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.02 E-value=0.00033 Score=60.71 Aligned_cols=230 Identities=11% Similarity=0.052 Sum_probs=129.5
Q ss_pred ecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCC-CCceeeEEeeeCCCCCEEEEEEEE-------ecCCCCcccE
Q 043816 106 DTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDD-YADLVDGFGYDAVSDDYKVVRLIQ-------FGRGKVEYTE 177 (378)
Q Consensus 106 ~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~lg~d~~~~~ykVv~~~~-------~~~~~~~~~~ 177 (378)
+.|.|-.-=...+-.+.|.|-.+-+|..+||.-....- ..+.+.. |. .-...||.... ..++......
T Consensus 31 GYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VP--yq--RYGHtvV~y~d~~yvWGGRND~egaCN~ 106 (392)
T KOG4693|consen 31 GYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVP--YQ--RYGHTVVEYQDKAYVWGGRNDDEGACNL 106 (392)
T ss_pred CcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccc--hh--hcCceEEEEcceEEEEcCccCcccccce
Confidence 34555443333445799999999999999983222110 0111000 00 11123333221 1122235678
Q ss_pred EEEEEcCCCceEEeecc--CCccccCCCCceEECCeeEEEEEeCCCC-CCCCEEEEEECCCceEeeec---CCCCCCCCC
Q 043816 178 IAVYSLKSNSSRRIRVD--FPYYFSHPRDGTFARGHVHWLVLNEPEG-YNGDLIVAFDLKSEEFFEVP---LPHLENRDS 251 (378)
Q Consensus 178 ~~vyss~t~~W~~~~~~--~p~~~~~~~~~v~~~G~lYwl~~~~~~~-~~~~~il~fD~~~~~~~~i~---~P~~~~~~~ 251 (378)
+.-|+.+++.|+...+. +|. ..-+.+++.++..+|-.++..+.- .....+.+||+++.+|+.+. .|+...+
T Consensus 107 Ly~fDp~t~~W~~p~v~G~vPg-aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD-- 183 (392)
T KOG4693|consen 107 LYEFDPETNVWKKPEVEGFVPG-ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD-- 183 (392)
T ss_pred eeeeccccccccccceeeecCC-ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh--
Confidence 88999999999987632 222 222334778888999888664311 11234889999999999973 5655543
Q ss_pred CCeeEEEEeCCeEEEEEecCC------------CCcEEEEEEcC-ceeeeEEEecCcccc-ceeeEEEEEeecCCEEEEe
Q 043816 252 GNLMYMGNFSGCLYFSCFCDY------------PEPVDIWIMKE-SWTKVFSFAGGVFGI-FTYAKALAYSKSGDKVLVD 317 (378)
Q Consensus 252 ~~~~~l~~~~G~L~l~~~~~~------------~~~i~iW~l~~-~W~~~~~i~~~~~~~-~~~~~~~~~~~~g~~vl~~ 317 (378)
+....+.+|..++.++..+ +.+|....++. .|.....-.. .+. -+..+.+.+ ||++.++.
T Consensus 184 --FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~--~P~GRRSHS~fvY--ng~~Y~FG 257 (392)
T KOG4693|consen 184 --FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM--KPGGRRSHSTFVY--NGKMYMFG 257 (392)
T ss_pred --hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc--CCCcccccceEEE--cceEEEec
Confidence 6666777888888876432 23455555544 7877622221 111 112222222 55555555
Q ss_pred eccCCCccccccCCcEEEEEECCCCeEEEEEEEecc
Q 043816 318 KFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGV 353 (378)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~ 353 (378)
-|.-.-| .....|+.||++|..|. .|..++.
T Consensus 258 GYng~ln----~HfndLy~FdP~t~~W~-~I~~~Gk 288 (392)
T KOG4693|consen 258 GYNGTLN----VHFNDLYCFDPKTSMWS-VISVRGK 288 (392)
T ss_pred ccchhhh----hhhcceeecccccchhe-eeeccCC
Confidence 2110000 12356999999999999 9887764
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.68 E-value=0.0024 Score=58.79 Aligned_cols=221 Identities=13% Similarity=0.057 Sum_probs=121.7
Q ss_pred ceEEEEcCCCcceeecC--CCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCC----CcccEEEEEEcCCCceEEee
Q 043816 119 NDIALWNPSTKKHVLLP--KFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGK----VEYTEIAVYSLKSNSSRRIR 192 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP--~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~----~~~~~~~vyss~t~~W~~~~ 192 (378)
+.+|++|--+.+|+.+- ..|.++ ..+.....+++ +-.+.-....+.. +....+.+|+..++.|..+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pR-----sshq~va~~s~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPR-----SSHQAVAVPSN--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCC-----ccceeEEeccC--eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 46999999999999873 333322 22223333333 1111111111111 24567889999999999998
Q ss_pred ccCCccc-cCCCC-ceEECCeeEEEEEeCCCC---CCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCeEEE
Q 043816 193 VDFPYYF-SHPRD-GTFARGHVHWLVLNEPEG---YNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGCLYF 266 (378)
Q Consensus 193 ~~~p~~~-~~~~~-~v~~~G~lYwl~~~~~~~---~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l 266 (378)
. +... ..+.+ .|...-.|.-.++-.+.. ..-.-+.+||+.+=+|+.+..+-..-. ..-.+++.+. .|.++|
T Consensus 171 ~--~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt-pRSGcq~~vtpqg~i~v 247 (521)
T KOG1230|consen 171 F--GGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT-PRSGCQFSVTPQGGIVV 247 (521)
T ss_pred c--CCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC-CCCcceEEecCCCcEEE
Confidence 2 2111 11111 344444443333322211 111239999999999999864332111 1114455555 888888
Q ss_pred EEecC----------CCCcEEEEEEcC--------ceeeeEEEecCccccceeeEEEEEeecCCEEEEeecc--CCCccc
Q 043816 267 SCFCD----------YPEPVDIWIMKE--------SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFL--YDEDED 326 (378)
Q Consensus 267 ~~~~~----------~~~~i~iW~l~~--------~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~--~~~~~~ 326 (378)
-+++. ....-++|.|+- .|.++..+.+...++ ..-.+++++++..+++.--- -+++++
T Consensus 248 yGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspR--sgfsv~va~n~kal~FGGV~D~eeeeEs 325 (521)
T KOG1230|consen 248 YGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPR--SGFSVAVAKNHKALFFGGVCDLEEEEES 325 (521)
T ss_pred EcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCC--CceeEEEecCCceEEecceecccccchh
Confidence 87642 123678999964 688887776622211 22236677776666665100 011111
Q ss_pred -cccCCcEEEEEECCCCeEEEEEEEec
Q 043816 327 -EGINKWELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 327 -~~~~~~~l~~yd~~t~~~~~~v~~~~ 352 (378)
++...+-|+.||+..|+|. +-++++
T Consensus 326 l~g~F~NDLy~fdlt~nrW~-~~qlq~ 351 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRNRWS-EGQLQG 351 (521)
T ss_pred hhhhhhhhhhheecccchhh-Hhhhcc
Confidence 1122356999999999999 776654
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.50 E-value=0.0036 Score=54.42 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=98.7
Q ss_pred ceEEEEcCCCcceeec------CCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEee
Q 043816 119 NDIALWNPSTKKHVLL------PKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIR 192 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~L------P~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 192 (378)
+.++-++|-|.+|++. |+.... ..+..+| +...|++-.. .........+++++..|-.||.+.
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~vPgaRDG-----HsAcV~g-----n~MyiFGGye-~~a~~FS~d~h~ld~~TmtWr~~~ 173 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFVPGARDG-----HSACVWG-----NQMYIFGGYE-EDAQRFSQDTHVLDFATMTWREMH 173 (392)
T ss_pred ceeeeeccccccccccceeeecCCccCC-----ceeeEEC-----cEEEEecChH-HHHHhhhccceeEeccceeeeehh
Confidence 4588889999999863 222211 1122222 2222222111 111225678889999999999986
Q ss_pred c-cCCccccCCCCceEECCeeEEEEEeCCCC--------CCCCEEEEEECCCceEeeec----CCCCCCCCCCCeeEEEE
Q 043816 193 V-DFPYYFSHPRDGTFARGHVHWLVLNEPEG--------YNGDLIVAFDLKSEEFFEVP----LPHLENRDSGNLMYMGN 259 (378)
Q Consensus 193 ~-~~p~~~~~~~~~v~~~G~lYwl~~~~~~~--------~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~l~~ 259 (378)
. ..|....-...++.++|.+|-.++..+.. .....|.+||++++.|...+ .|.+.. .....+
T Consensus 174 Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-----SHS~fv 248 (392)
T KOG4693|consen 174 TKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-----SHSTFV 248 (392)
T ss_pred ccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc-----ccceEE
Confidence 2 23333333445788899999999876532 12345999999999997652 232222 667789
Q ss_pred eCCeEEEEEecCCC---CcEEEEEEcC---ceeeeEE
Q 043816 260 FSGCLYFSCFCDYP---EPVDIWIMKE---SWTKVFS 290 (378)
Q Consensus 260 ~~G~L~l~~~~~~~---~~i~iW~l~~---~W~~~~~ 290 (378)
.+|++++.++.... ---++|..+- .|+++..
T Consensus 249 Yng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 249 YNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred EcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence 99999999987642 2457888876 7987653
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.46 E-value=0.0032 Score=56.58 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=39.7
Q ss_pred CCCCc----HHHHHHHHhcCChhchheeeeccccchhhccChhHHHHH
Q 043816 1 MERLP----RDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTH 44 (378)
Q Consensus 1 i~~LP----~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~~~ 44 (378)
|..|| +++.+.||+.|...+|..|..|||+|+.+++++...+..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 35689 999999999999999999999999999999998876643
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.41 E-value=0.021 Score=55.97 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=103.9
Q ss_pred cceEEeecCC------ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEE
Q 043816 109 NGLIALKNGE------NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYS 182 (378)
Q Consensus 109 ~Gll~~~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vys 182 (378)
+.|.++-... +.++..|+.|++|..+.+....+.. ........+ ++ +|+.+............++||+
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~-r~~Hs~~~~----g~-~l~vfGG~~~~~~~~ndl~i~d 196 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPP-RAGHSATVV----GT-KLVVFGGIGGTGDSLNDLHIYD 196 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCC-cccceEEEE----CC-EEEEECCccCcccceeeeeeec
Confidence 4455554422 3799999999999998765542211 111111111 12 4444443222222577899999
Q ss_pred cCCCceEEeeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec----CCCCCCCCCCCeeEE
Q 043816 183 LKSNSSRRIRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP----LPHLENRDSGNLMYM 257 (378)
Q Consensus 183 s~t~~W~~~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~l 257 (378)
.++.+|..+.+.-+.......+ .+.+++.++.+++.......-.-+..||+.+.+|..++ .|.... ...+
T Consensus 197 ~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~-----~h~~ 271 (482)
T KOG0379|consen 197 LETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRS-----GHSL 271 (482)
T ss_pred cccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcc-----eeee
Confidence 9999999998422222233334 45555565555554422223345999999999998432 333332 5556
Q ss_pred EEeCCeEEEEEecCCC---CcEEEEEEcC---ceeeeEEEe
Q 043816 258 GNFSGCLYFSCFCDYP---EPVDIWIMKE---SWTKVFSFA 292 (378)
Q Consensus 258 ~~~~G~L~l~~~~~~~---~~i~iW~l~~---~W~~~~~i~ 292 (378)
+..+.++.++++.... .--++|.|+. .|.++....
T Consensus 272 ~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 272 TVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred EEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 6667788888876552 3567888876 899987777
No 31
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.31 E-value=0.038 Score=51.25 Aligned_cols=170 Identities=11% Similarity=0.053 Sum_probs=103.5
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCC-ceEE-CCeeEEEEEeCCCC-----CCCCEEEEEECCCceEeeecCCCCC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRD-GTFA-RGHVHWLVLNEPEG-----YNGDLIVAFDLKSEEFFEVPLPHLE 247 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~-~v~~-~G~lYwl~~~~~~~-----~~~~~il~fD~~~~~~~~i~~P~~~ 247 (378)
...+..|+.+++.|+.+. ........+.+ +|.+ .|.+|..++...+. ++..-+-.||+.+.+|..+.++...
T Consensus 97 YndLy~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeeeEEeccccceeEec-cCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 456788999999999988 22222222222 4444 47666666554322 2233489999999999999877544
Q ss_pred CCCCCCeeEEEEeCCeEEEEEecCCC-------CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeec
Q 043816 248 NRDSGNLMYMGNFSGCLYFSCFCDYP-------EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKF 319 (378)
Q Consensus 248 ~~~~~~~~~l~~~~G~L~l~~~~~~~-------~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~ 319 (378)
.. ....+++..+.+|.+.++..+. +-+.+..|+. .|.+... +-. .+.-+...-+.+.++|+++++.-|
T Consensus 176 S~--RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga-~PtpRSGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 176 SP--RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGA-GPTPRSGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred CC--CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCC-CCCCCCcceEEecCCCcEEEEcch
Confidence 32 1156678888888888775332 2344445555 8999865 321 111112223566778888888866
Q ss_pred cCCCccc---cccCCcEEEEEECCC-----CeEEEEEEE
Q 043816 320 LYDEDED---EGINKWELDWYDLQN-----QRAAGQVTV 350 (378)
Q Consensus 320 ~~~~~~~---~~~~~~~l~~yd~~t-----~~~~~~v~~ 350 (378)
.+...+. .+....-++..++++ -+|+ +++-
T Consensus 252 sK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~-kvkp 289 (521)
T KOG1230|consen 252 SKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWT-KVKP 289 (521)
T ss_pred hHhhhhhhhhcCceeeeeeeecCCcCCCcceeEe-eccC
Confidence 5433221 122234578889999 7788 7763
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.26 E-value=0.057 Score=52.98 Aligned_cols=214 Identities=12% Similarity=0.004 Sum_probs=120.8
Q ss_pred eEEEEcCCCcceeecCCCCCCCCC-CCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc-
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDD-YADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY- 197 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~- 197 (378)
.++|+|--++.|.........+.. ........ . + +++.+............++.|+..|+.|+.+.. ...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~-----~-~-~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~-~~~~ 160 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV-----G-D-KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSP-TGDP 160 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEE-----C-C-eEEEEccccCCCCChhheEeccCCCCcEEEecC-cCCC
Confidence 499999999888877644332211 01111111 1 2 333333211111235689999999999999872 221
Q ss_pred cccCCC-CceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCC--CC
Q 043816 198 YFSHPR-DGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDY--PE 274 (378)
Q Consensus 198 ~~~~~~-~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~--~~ 274 (378)
...... ..+.++-++|..++..........+.+||+++.+|..+........ ++....++..+++++++.+... ..
T Consensus 161 P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~-pR~gH~~~~~~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 161 PPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS-PRYGHAMVVVGNKLLVFGGGDDGDVY 239 (482)
T ss_pred CCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC-CCCCceEEEECCeEEEEeccccCCce
Confidence 112222 3566667888888776543345679999999999999753322211 1115667888899999887652 22
Q ss_pred cEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccc-c-CCcEEEEEECCCCeEEEEEE
Q 043816 275 PVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEG-I-NKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 275 ~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~-~-~~~~l~~yd~~t~~~~~~v~ 349 (378)
.=++|.|+- .|.+.....- .+.-+..+...+. ...++++.- +... . .-..++.||++++.|. ++.
T Consensus 240 l~D~~~ldl~~~~W~~~~~~g~--~p~~R~~h~~~~~-~~~~~l~gG------~~~~~~~~l~~~~~l~~~~~~w~-~~~ 309 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLLPTGGD--LPSPRSGHSLTVS-GDHLLLFGG------GTDPKQEPLGDLYGLDLETLVWS-KVE 309 (482)
T ss_pred ecceEeeecccceeeeccccCC--CCCCcceeeeEEE-CCEEEEEcC------Cccccccccccccccccccccee-eee
Confidence 456777765 6774332221 2222333333332 223444441 1110 1 2356889999999999 877
Q ss_pred Eec
Q 043816 350 VHG 352 (378)
Q Consensus 350 ~~~ 352 (378)
..+
T Consensus 310 ~~~ 312 (482)
T KOG0379|consen 310 SVG 312 (482)
T ss_pred ccc
Confidence 433
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0002 Score=63.39 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHhcCChhchheeeeccccchhhccChhH
Q 043816 2 ERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKF 40 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F 40 (378)
..|||++++.||+.|+-|++.++..|||+|.++.++...
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 469999999999999999999999999999998776554
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.55 E-value=0.00072 Score=60.15 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=39.5
Q ss_pred CCCCcHHHHHHHHhcC-----ChhchheeeeccccchhhccChhHHHHHh
Q 043816 1 MERLPRDLNMNILSRL-----SVKCLLRLRCVSKPFCSLIDSQKFVKTHL 45 (378)
Q Consensus 1 i~~LP~Dll~eIL~rL-----p~~sl~r~~~VcK~W~~~i~~p~F~~~~~ 45 (378)
|+.||||+|.+||.+. +..++.++.+|||.|+-..++|+|.+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 4679999999999865 46999999999999999999999987643
No 35
>PF13964 Kelch_6: Kelch motif
Probab=96.30 E-value=0.01 Score=38.23 Aligned_cols=41 Identities=12% Similarity=0.287 Sum_probs=32.8
Q ss_pred CceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCC
Q 043816 204 DGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLP 244 (378)
Q Consensus 204 ~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P 244 (378)
..|.++|.||.+++..........+..||+++++|+.+ ++|
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 37899999999998875333445699999999999998 455
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.55 E-value=0.032 Score=35.24 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=31.4
Q ss_pred ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee
Q 043816 205 GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV 241 (378)
Q Consensus 205 ~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i 241 (378)
++.++|.||.+++..........+..||+.+++|+.+
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 6899999999998876444456799999999999987
No 37
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.50 E-value=3 Score=36.29 Aligned_cols=187 Identities=15% Similarity=0.063 Sum_probs=97.2
Q ss_pred ccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC-
Q 043816 108 CNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN- 186 (378)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~- 186 (378)
.+|.+.+......++..|+.||+...--..+.... .. ... + .+ +|+... ....+..++..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~---~~--~~~-~--~~--~v~v~~-------~~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS---GA--PVV-D--GG--RVYVGT-------SDGSLYALDAKTGK 97 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG---SG--EEE-E--TT--EEEEEE-------TTSEEEEEETTTSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc---ce--eee-c--cc--cccccc-------ceeeeEecccCCcc
Confidence 67778777778889999999998775433332211 11 111 1 12 333222 1226777887776
Q ss_pred -ceEE-eeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCce--Eee-ecCCCCCCC---CCCCeeEE
Q 043816 187 -SSRR-IRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE--FFE-VPLPHLENR---DSGNLMYM 257 (378)
Q Consensus 187 -~W~~-~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~--~~~-i~~P~~~~~---~~~~~~~l 257 (378)
.|+. .. ..+........ ....++.+|.....+ .|.++|+.+.+ |.. +..|..... -.+....+
T Consensus 98 ~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 98 VLWSIYLT-SSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp EEEEEEE--SSCTCSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred eeeeeccc-cccccccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccce
Confidence 6984 44 22222222222 333355666554332 49999988654 444 233332110 00112344
Q ss_pred EEeCCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEE-EeecCCEEEEeeccCCCccccccCCcE
Q 043816 258 GNFSGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALA-YSKSGDKVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 258 ~~~~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~-~~~~g~~vl~~~~~~~~~~~~~~~~~~ 333 (378)
...+|.+++...... .+.+ .++. .|... +.. +.. ....++.|++. ..++.
T Consensus 170 ~~~~~~v~~~~~~g~--~~~~-d~~tg~~~w~~~--~~~----------~~~~~~~~~~~l~~~-----------~~~~~ 223 (238)
T PF13360_consen 170 VISDGRVYVSSGDGR--VVAV-DLATGEKLWSKP--ISG----------IYSLPSVDGGTLYVT-----------SSDGR 223 (238)
T ss_dssp ECCTTEEEEECCTSS--EEEE-ETTTTEEEEEEC--SS-----------ECECEECCCTEEEEE-----------ETTTE
T ss_pred EEECCEEEEEcCCCe--EEEE-ECCCCCEEEEec--CCC----------ccCCceeeCCEEEEE-----------eCCCE
Confidence 555675555544332 3444 4444 35222 111 111 23477888888 35799
Q ss_pred EEEEECCCCeEE
Q 043816 334 LDWYDLQNQRAA 345 (378)
Q Consensus 334 l~~yd~~t~~~~ 345 (378)
++.+|++|++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999999875
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.35 E-value=4.7 Score=40.14 Aligned_cols=42 Identities=33% Similarity=0.479 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHhcCChhchheeeeccccchhhccChhHHH
Q 043816 1 MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVK 42 (378)
Q Consensus 1 i~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~ 42 (378)
+..||.++...||..|+.++++++++||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 457999999999999999999999999999999998766654
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=94.10 E-value=0.16 Score=32.42 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=31.2
Q ss_pred CceEECCeeEEEEEe--CCCCCCCCEEEEEECCCceEeeecC
Q 043816 204 DGTFARGHVHWLVLN--EPEGYNGDLIVAFDLKSEEFFEVPL 243 (378)
Q Consensus 204 ~~v~~~G~lYwl~~~--~~~~~~~~~il~fD~~~~~~~~i~~ 243 (378)
.++.++|+||..++. .........+.+||+++++|+.+..
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 378999999999988 2223345669999999999998753
No 40
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.81 E-value=4.6 Score=35.90 Aligned_cols=126 Identities=11% Similarity=0.143 Sum_probs=78.5
Q ss_pred CCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCC-------CCCeeEEEEeCCeEEEEEecCCCC
Q 043816 203 RDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRD-------SGNLMYMGNFSGCLYFSCFCDYPE 274 (378)
Q Consensus 203 ~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~-------~~~~~~l~~~~G~L~l~~~~~~~~ 274 (378)
.+.|..||.+|.-.... ..|+.||+.++.-. ...+|...... ....+.+++-+..|-++.......
T Consensus 72 tG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred CCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 34788999999987643 35999999999887 66777654320 113677888889999998765432
Q ss_pred -cEEEEEEcC-------ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEE
Q 043816 275 -PVDIWIMKE-------SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAG 346 (378)
Q Consensus 275 -~i~iW~l~~-------~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~ 346 (378)
.|.|=.|+. .|...+ +-.. ....+.++ | +|+..... .......-+.||+.+++-+
T Consensus 146 g~ivvskld~~tL~v~~tw~T~~--~k~~-----~~naFmvC--G-vLY~~~s~------~~~~~~I~yafDt~t~~~~- 208 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNTSY--PKRS-----AGNAFMVC--G-VLYATDSY------DTRDTEIFYAFDTYTGKEE- 208 (250)
T ss_pred CcEEEEeeCcccCceEEEEEecc--Cchh-----hcceeeEe--e-EEEEEEEC------CCCCcEEEEEEECCCCcee-
Confidence 588877765 454321 1111 11223332 2 34444211 0012456789999999998
Q ss_pred EEEEe
Q 043816 347 QVTVH 351 (378)
Q Consensus 347 ~v~~~ 351 (378)
.+.|.
T Consensus 209 ~~~i~ 213 (250)
T PF02191_consen 209 DVSIP 213 (250)
T ss_pred ceeee
Confidence 77754
No 41
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.79 E-value=8.6 Score=33.82 Aligned_cols=200 Identities=15% Similarity=0.088 Sum_probs=108.0
Q ss_pred ecccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 106 DTCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 106 ~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
...+|-|.+.+ ....++.++|.+++...+..+. ..++.++...+.+ +... .....+++..
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---------~~G~~~~~~~g~l--~v~~--------~~~~~~~d~~ 68 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---------PNGMAFDRPDGRL--YVAD--------SGGIAVVDPD 68 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---------EEEEEEECTTSEE--EEEE--------TTCEEEEETT
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---------CceEEEEccCCEE--EEEE--------cCceEEEecC
Confidence 44456665555 4678999999999887644332 3455666333332 2222 2344667999
Q ss_pred CCceEEeeccCCcc---ccCCCC-ceEECCeeEEEEEeCCCCCCC--CEEEEEECCCceEeee----cCCCCCCCCCCCe
Q 043816 185 SNSSRRIRVDFPYY---FSHPRD-GTFARGHVHWLVLNEPEGYNG--DLIVAFDLKSEEFFEV----PLPHLENRDSGNL 254 (378)
Q Consensus 185 t~~W~~~~~~~p~~---~~~~~~-~v~~~G~lYwl~~~~~~~~~~--~~il~fD~~~~~~~~i----~~P~~~~~~~~~~ 254 (378)
++.++.+. ..+.. ....+. .+--+|.+|.-.......... ..|..+|.. .+...+ ..| +
T Consensus 69 ~g~~~~~~-~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---------N 137 (246)
T PF08450_consen 69 TGKVTVLA-DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---------N 137 (246)
T ss_dssp TTEEEEEE-EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---------E
T ss_pred CCcEEEEe-eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---------c
Confidence 99998877 33211 111222 445578977665443222122 579999999 444433 222 2
Q ss_pred eEEEEeCCe-EEEEEecCCCCcEEEEEEcC---ceeeeEEE-ecCccccceeeEEEEEeecCCEEEEeeccCCCcccccc
Q 043816 255 MYMGNFSGC-LYFSCFCDYPEPVDIWIMKE---SWTKVFSF-AGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGI 329 (378)
Q Consensus 255 ~~l~~~~G~-L~l~~~~~~~~~i~iW~l~~---~W~~~~~i-~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~ 329 (378)
.-....+|+ |+++..... .|..+.++. .+.....+ .... ......-+++..+|. |++.. .
T Consensus 138 Gi~~s~dg~~lyv~ds~~~--~i~~~~~~~~~~~~~~~~~~~~~~~--~~g~pDG~~vD~~G~-l~va~----------~ 202 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNG--RIWRFDLDADGGELSNRRVFIDFPG--GPGYPDGLAVDSDGN-LWVAD----------W 202 (246)
T ss_dssp EEEEETTSSEEEEEETTTT--EEEEEEEETTTCCEEEEEEEEE-SS--SSCEEEEEEEBTTS--EEEEE----------E
T ss_pred ceEECCcchheeecccccc--eeEEEeccccccceeeeeeEEEcCC--CCcCCCcceEcCCCC-EEEEE----------c
Confidence 222333554 555544444 555555543 34443333 2211 112234467777776 44443 4
Q ss_pred CCcEEEEEECCCCeEEEEEEEe
Q 043816 330 NKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
...++..||++.+.++ +|.+.
T Consensus 203 ~~~~I~~~~p~G~~~~-~i~~p 223 (246)
T PF08450_consen 203 GGGRIVVFDPDGKLLR-EIELP 223 (246)
T ss_dssp TTTEEEEEETTSCEEE-EEE-S
T ss_pred CCCEEEEECCCccEEE-EEcCC
Confidence 6789999999988788 88775
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=91.62 E-value=0.59 Score=29.23 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=24.9
Q ss_pred EEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCC
Q 043816 161 KVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFP 196 (378)
Q Consensus 161 kVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 196 (378)
+|..+............+++|+..+++|+.++ ++|
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~mp 47 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP-PMP 47 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE-EES
T ss_pred EEEEEeeecccCceeeeEEEEeCCCCEEEEcC-CCC
Confidence 44444443333456889999999999999988 554
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=91.59 E-value=0.3 Score=31.03 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=23.3
Q ss_pred ceEE-CCeeEEEEEeCCCCCCCCEEEEEECCCceEeee
Q 043816 205 GTFA-RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV 241 (378)
Q Consensus 205 ~v~~-~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i 241 (378)
++.+ ++.+|..++..........+..||+++++|+.+
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 4555 589998887764322334589999999999998
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.46 E-value=9.5 Score=33.69 Aligned_cols=171 Identities=13% Similarity=0.075 Sum_probs=93.7
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCC----ceEeeecCCCCCCCC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKS----EEFFEVPLPHLENRD 250 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~----~~~~~i~~P~~~~~~ 250 (378)
.....+|+..+++++.+. ......+....+.-||.+.-.++... ....+-.|++.+ ..|... |......
T Consensus 45 ~a~s~~yD~~tn~~rpl~--v~td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~ 117 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLT--VQTDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTES--PNDMQSG 117 (243)
T ss_pred eEEEEEEecCCCcEEecc--CCCCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceEC--cccccCC
Confidence 455778999999999887 23333444446777888876665543 234577788754 345443 2222111
Q ss_pred CCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcC------ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCC
Q 043816 251 SGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKE------SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDE 323 (378)
Q Consensus 251 ~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~------~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~ 323 (378)
.. +.+...+ +|++.++++.... ..+.|--+. .|........ ......+-.+.+.++|++.+..
T Consensus 118 RW-YpT~~~L~DG~vlIvGG~~~~-t~E~~P~~~~~~~~~~~~~l~~~~~--~~~~nlYP~~~llPdG~lFi~a------ 187 (243)
T PF07250_consen 118 RW-YPTATTLPDGRVLIVGGSNNP-TYEFWPPKGPGPGPVTLPFLSQTSD--TLPNNLYPFVHLLPDGNLFIFA------ 187 (243)
T ss_pred Cc-cccceECCCCCEEEEeCcCCC-cccccCCccCCCCceeeecchhhhc--cCccccCceEEEcCCCCEEEEE------
Confidence 12 5555444 7899888876643 555554422 1211111110 0111222224556788755555
Q ss_pred ccccccCCcEEEEEECCCCeEEEEEEEeccCCCceeEEEEEeccccCCC
Q 043816 324 DEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAA 372 (378)
Q Consensus 324 ~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~ 372 (378)
+ ..-..||.+++++. + .+...+.. .+.++...+-+.++-
T Consensus 188 ------n-~~s~i~d~~~n~v~-~-~lP~lPg~-~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 188 ------N-RGSIIYDYKTNTVV-R-TLPDLPGG-PRNYPASGSSVMLPL 226 (243)
T ss_pred ------c-CCcEEEeCCCCeEE-e-eCCCCCCC-ceecCCCcceEEecC
Confidence 3 35667799999773 2 24444443 457788877554443
No 45
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=90.43 E-value=7.2 Score=37.12 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=64.7
Q ss_pred CEEEEEECCCceEeeecCCCCCCCCCCCeeEE-EEe-CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceee
Q 043816 226 DLIVAFDLKSEEFFEVPLPHLENRDSGNLMYM-GNF-SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYA 302 (378)
Q Consensus 226 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l-~~~-~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~ 302 (378)
.++.+||+.+.+...+..|..... + .+.. .+. ++...++.+... .|.+-..+. +|.....|+- ..
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~--~-~~e~FeVShd~~fia~~G~~G--~I~lLhakT~eli~s~KieG-------~v 347 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEE--K-SMERFEVSHDSNFIAIAGNNG--HIHLLHAKTKELITSFKIEG-------VV 347 (514)
T ss_pred eEEEEeeccccccccccCCCCccc--c-hhheeEecCCCCeEEEcccCc--eEEeehhhhhhhhheeeecc-------EE
Confidence 469999999999999988876652 2 2332 222 344333434333 666665555 7776666664 23
Q ss_pred EEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEE
Q 043816 303 KALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAG 346 (378)
Q Consensus 303 ~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~ 346 (378)
.-+.+..+|..|+.. ...+.++++|++++...+
T Consensus 348 ~~~~fsSdsk~l~~~-----------~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 348 SDFTFSSDSKELLAS-----------GGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred eeEEEecCCcEEEEE-----------cCCceEEEEecCCcceEE
Confidence 445556788777777 366799999999998873
No 46
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.25 E-value=0.87 Score=41.79 Aligned_cols=114 Identities=10% Similarity=0.042 Sum_probs=76.6
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCCceEECC-eeEEEEEeCCC--------------------------------
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARG-HVHWLVLNEPE-------------------------------- 221 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G-~lYwl~~~~~~-------------------------------- 221 (378)
...+..|++.+++|..+++..|.. .....++.++| .+|++++....
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeeeEEecCCCChhheeccccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 456788999999999999666665 33444666666 89988865420
Q ss_pred -CCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecC--CCCcEEEEEEcC-----ceeeeEEEe
Q 043816 222 -GYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCD--YPEPVDIWIMKE-----SWTKVFSFA 292 (378)
Q Consensus 222 -~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~--~~~~i~iW~l~~-----~W~~~~~i~ 292 (378)
.-.-..+++||+.+++|+.. ..|..... -...+..+++|.++..+- .-++-.+|+.+- .|.+.-.++
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a----Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGENPFYGNA----GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred HhcccccccccccccchhhhcCcCcccCcc----CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCC
Confidence 01234599999999999988 47766543 333455567899987753 223455554432 899987666
Q ss_pred c
Q 043816 293 G 293 (378)
Q Consensus 293 ~ 293 (378)
.
T Consensus 267 ~ 267 (381)
T COG3055 267 A 267 (381)
T ss_pred C
Confidence 5
No 47
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.07 E-value=16 Score=34.10 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=73.4
Q ss_pred eEeecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCC-c---ccEE
Q 043816 103 PIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKV-E---YTEI 178 (378)
Q Consensus 103 ~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~-~---~~~~ 178 (378)
..++-.+.-++..+.....+|+++.|+....+|.+..... ....+.. ++ ++..+........ . ...+
T Consensus 70 ~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~--~pisv~V-----G~--~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKR--CPISVSV-----GD--KLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCc--ceEEEEe-----CC--eEEEeeccCccccccCccceeE
Confidence 3334334444444445679999999999999998765322 1222222 22 2555544321110 0 0145
Q ss_pred EEE--E--------cCCCceEEeeccCCccccCC-------CCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee
Q 043816 179 AVY--S--------LKSNSSRRIRVDFPYYFSHP-------RDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV 241 (378)
Q Consensus 179 ~vy--s--------s~t~~W~~~~~~~p~~~~~~-------~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i 241 (378)
|++ . .++.+|+.++ .+|+..... .-+|. +|.--|+...... ..-.+||+++.+|+..
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP-~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLP-PPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WGTYSFDTESHEWRKH 214 (342)
T ss_pred EEeccccccccccCCCcceEEcCC-CCCccccCCcccceEEEEEEe-cCCeEEEEecCCc----eEEEEEEcCCcceeec
Confidence 555 2 2345788877 555433221 12555 7877777554320 2388999999999986
Q ss_pred ---cCCCCCC
Q 043816 242 ---PLPHLEN 248 (378)
Q Consensus 242 ---~~P~~~~ 248 (378)
.+|....
T Consensus 215 GdW~LPF~G~ 224 (342)
T PF07893_consen 215 GDWMLPFHGQ 224 (342)
T ss_pred cceecCcCCc
Confidence 5886543
No 48
>PF13964 Kelch_6: Kelch motif
Probab=89.15 E-value=0.61 Score=29.76 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.8
Q ss_pred CcccEEEEEEcCCCceEEeeccCC
Q 043816 173 VEYTEIAVYSLKSNSSRRIRVDFP 196 (378)
Q Consensus 173 ~~~~~~~vyss~t~~W~~~~~~~p 196 (378)
.....+++|+.++++|+.++ ++|
T Consensus 25 ~~~~~v~~yd~~t~~W~~~~-~mp 47 (50)
T PF13964_consen 25 KYSNDVERYDPETNTWEQLP-PMP 47 (50)
T ss_pred CccccEEEEcCCCCcEEECC-CCC
Confidence 35688999999999999998 665
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.77 E-value=0.14 Score=47.95 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHhcCChhchheeeeccccchhhccChh
Q 043816 3 RLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQK 39 (378)
Q Consensus 3 ~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~ 39 (378)
.||.+++..||+-|..|++.|++.+|+.|+-...|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 6999999999999999999999999999999876643
No 50
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.56 E-value=23 Score=33.83 Aligned_cols=153 Identities=12% Similarity=0.092 Sum_probs=83.2
Q ss_pred cEEEEEEcCCC-----ceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCce---EeeecCCCCC
Q 043816 176 TEIAVYSLKSN-----SSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE---FFEVPLPHLE 247 (378)
Q Consensus 176 ~~~~vyss~t~-----~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~---~~~i~~P~~~ 247 (378)
..+.+.+..++ .|+.+....+... ...-..++.+|.++..+ ...+.|++.|+.+-. |..+-.|...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~---~~v~~~~~~~yi~Tn~~---a~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE---YYVDHHGDRLYILTNDD---APNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E---EEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE---EEEEccCCEEEEeeCCC---CCCcEEEEecccccccccceeEEcCCCC
Confidence 56666666654 6777761111110 01234477888877643 234679999998654 6644333332
Q ss_pred CCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcccc
Q 043816 248 NRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDE 327 (378)
Q Consensus 248 ~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~ 327 (378)
.. . ...+...++.|.+....+....|.++.+...|.. ..++++..+ ....+....+++.+++.....
T Consensus 326 ~~--~-l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~-~~~~~p~~g---~v~~~~~~~~~~~~~~~~ss~------ 392 (414)
T PF02897_consen 326 DV--S-LEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES-REIPLPEAG---SVSGVSGDFDSDELRFSYSSF------ 392 (414)
T ss_dssp SE--E-EEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE-EEEESSSSS---EEEEEES-TT-SEEEEEEEET------
T ss_pred ce--e-EEEEEEECCEEEEEEEECCccEEEEEECCCCcEE-eeecCCcce---EEeccCCCCCCCEEEEEEeCC------
Confidence 11 0 3334566889998888887667888877622332 334432111 111222234666677763111
Q ss_pred ccCCcEEEEEECCCCeEEEEEE
Q 043816 328 GINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 328 ~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
..-..++.||+++++.+ .++
T Consensus 393 -~~P~~~y~~d~~t~~~~-~~k 412 (414)
T PF02897_consen 393 -TTPPTVYRYDLATGELT-LLK 412 (414)
T ss_dssp -TEEEEEEEEETTTTCEE-EEE
T ss_pred -CCCCEEEEEECCCCCEE-EEE
Confidence 23468999999999999 764
No 51
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.01 E-value=14 Score=34.51 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=49.1
Q ss_pred EEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCce-----------EeeecCCC
Q 043816 177 EIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE-----------FFEVPLPH 245 (378)
Q Consensus 177 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~-----------~~~i~~P~ 245 (378)
.+..|+-++..|+... +. .+.....+.++..-=-|++-..... ...+-+.|+.+.. |..+..|.
T Consensus 200 GTysfDt~~~~W~~~G-dW--~LPF~G~a~y~~el~~W~Gls~~~~--~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~ 274 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHG-DW--MLPFHGQAEYVPELDLWFGLSSDGG--GGHLCACDVSSADSASPPPEWKLTWEELFPPE 274 (342)
T ss_pred EEEEEEcCCcceeecc-ce--ecCcCCccEECCCcCeEEEeccCCC--CcEEEEEeccccccCCCCCcceeccccccccc
Confidence 4677777888999997 32 2222233556555557777665421 1478999987632 22233343
Q ss_pred CCCCCCCCeeEEEEe-CCeEEEEEec
Q 043816 246 LENRDSGNLMYMGNF-SGCLYFSCFC 270 (378)
Q Consensus 246 ~~~~~~~~~~~l~~~-~G~L~l~~~~ 270 (378)
... .. ..+|+.+ +|+.|++-..
T Consensus 275 ~~~--~~-~~~Lv~lG~grFCi~~~~ 297 (342)
T PF07893_consen 275 EWR--HV-GATLVYLGSGRFCIVEFF 297 (342)
T ss_pred ccc--cc-CceEEECCCCCEEEEEEe
Confidence 311 12 4556555 4788888653
No 52
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=87.93 E-value=27 Score=33.71 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=87.4
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCC-----------CCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHP-----------RDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPL 243 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~-----------~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~ 243 (378)
...+.+|++.+++=+.++..+|..-... ..-..++|-.+-+...+. ...+++...-- |++
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGk-------aFi~~~~~~~~--iqv 356 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGK-------AFIMRPWDGYS--IQV 356 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCc-------EEEECCCCCee--EEc
Confidence 5678889999998888886666431100 113466788887776653 45555444333 333
Q ss_pred CCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCC
Q 043816 244 PHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDE 323 (378)
Q Consensus 244 P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~ 323 (378)
+.... .+ ..++.....++.+.. .+...+.|+-.+. .++.++..+ +.....+.+.++|..+++.
T Consensus 357 ~~~~~--Vr-Y~r~~~~~e~~vigt--~dgD~l~iyd~~~--~e~kr~e~~----lg~I~av~vs~dGK~~vva------ 419 (668)
T COG4946 357 GKKGG--VR-YRRIQVDPEGDVIGT--NDGDKLGIYDKDG--GEVKRIEKD----LGNIEAVKVSPDGKKVVVA------ 419 (668)
T ss_pred CCCCc--eE-EEEEccCCcceEEec--cCCceEEEEecCC--ceEEEeeCC----ccceEEEEEcCCCcEEEEE------
Confidence 33222 11 444444444333333 3333888888876 445555541 2234457888899988888
Q ss_pred ccccccCCcEEEEEECCCCeEEEEEE
Q 043816 324 DEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 324 ~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
.....+.++|++|+..+ .+.
T Consensus 420 -----Ndr~el~vididngnv~-~id 439 (668)
T COG4946 420 -----NDRFELWVIDIDNGNVR-LID 439 (668)
T ss_pred -----cCceEEEEEEecCCCee-Eec
Confidence 36789999999999999 766
No 53
>smart00284 OLF Olfactomedin-like domains.
Probab=87.31 E-value=21 Score=31.78 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=75.2
Q ss_pred CCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCC---C----CCCeeEEEEeCCeEEEEEecCC-C
Q 043816 203 RDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENR---D----SGNLMYMGNFSGCLYFSCFCDY-P 273 (378)
Q Consensus 203 ~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~---~----~~~~~~l~~~~G~L~l~~~~~~-~ 273 (378)
.+.|..||.+|.-.... ..|+.||+.+++-.. ..+|...-. . ....+.|++-+..|-++....+ .
T Consensus 77 tG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 77 TGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred ccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 34799999999965443 349999999998864 346643210 0 0126788999999999977643 2
Q ss_pred CcEEEEEEcC-------ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEE
Q 043816 274 EPVDIWIMKE-------SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAG 346 (378)
Q Consensus 274 ~~i~iW~l~~-------~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~ 346 (378)
..|.|=.|+. .|...+.-.. ....+.++ | +|+..... ........+.||..|++-+
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~~~k~s-------a~naFmvC--G-vLY~~~s~------~~~~~~I~yayDt~t~~~~- 213 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITTYNKRS-------ASNAFMIC--G-ILYVTRSL------GSKGEKVFYAYDTNTGKEG- 213 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcCCCccc-------ccccEEEe--e-EEEEEccC------CCCCcEEEEEEECCCCccc-
Confidence 4788888876 4554221111 11223333 1 34444210 0023456788999998877
Q ss_pred EEEE
Q 043816 347 QVTV 350 (378)
Q Consensus 347 ~v~~ 350 (378)
.+.|
T Consensus 214 ~~~i 217 (255)
T smart00284 214 HLDI 217 (255)
T ss_pred eeee
Confidence 6654
No 54
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=86.41 E-value=27 Score=32.23 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=72.5
Q ss_pred EEEEEECCCceEeee---cCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEec--Ccccc
Q 043816 227 LIVAFDLKSEEFFEV---PLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAG--GVFGI 298 (378)
Q Consensus 227 ~il~fD~~~~~~~~i---~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~--~~~~~ 298 (378)
.|..||++....... .++++... ..-..--+|+++.+..+-.. ++.+|..+. +-..+.++.. ..|..
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GP----RHi~FHpn~k~aY~v~EL~s-tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGP----RHIVFHPNGKYAYLVNELNS-TVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCc----ceEEEcCCCcEEEEEeccCC-EEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 477777765554432 34444432 34445668898888776543 999999987 5566666664 34444
Q ss_pred ceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEec
Q 043816 299 FTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 299 ~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~ 352 (378)
-.....+.+..+|.-|+..+ .+.+.-.++.-|..+++++ -+....
T Consensus 243 ~~~~aaIhis~dGrFLYasN--------Rg~dsI~~f~V~~~~g~L~-~~~~~~ 287 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASN--------RGHDSIAVFSVDPDGGKLE-LVGITP 287 (346)
T ss_pred CCceeEEEECCCCCEEEEec--------CCCCeEEEEEEcCCCCEEE-EEEEec
Confidence 45566788888999888873 2233345566699999999 777654
No 55
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=86.26 E-value=46 Score=34.72 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=43.2
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-----ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEE
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-----SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELD 335 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-----~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~ 335 (378)
+|.+..+..++. .+.||.+++ .|..+..-.- +.......-.+.+++|+.+++. ..++.+.
T Consensus 149 ~~~fLAvss~dG--~v~iw~~~~~~~~~tl~~v~k~n~--~~~s~i~~~~aW~Pk~g~la~~-----------~~d~~Vk 213 (933)
T KOG1274|consen 149 KGNFLAVSSCDG--KVQIWDLQDGILSKTLTGVDKDNE--FILSRICTRLAWHPKGGTLAVP-----------PVDNTVK 213 (933)
T ss_pred CCCEEEEEecCc--eEEEEEcccchhhhhcccCCcccc--ccccceeeeeeecCCCCeEEee-----------ccCCeEE
Confidence 566666666666 899999988 4544421111 1112334445666776666666 3677888
Q ss_pred EEECCCCeEE
Q 043816 336 WYDLQNQRAA 345 (378)
Q Consensus 336 ~yd~~t~~~~ 345 (378)
+|+.++....
T Consensus 214 vy~r~~we~~ 223 (933)
T KOG1274|consen 214 VYSRKGWELQ 223 (933)
T ss_pred EEccCCceeh
Confidence 8888777666
No 56
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.15 E-value=29 Score=32.36 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCCCCCEEEEEECCCce--Eee---ecCCCCCCCCCCCeeEE-EEeCCe-EEEEEecCCCCcEEEEEE
Q 043816 209 RGHVHWLVLNEPEGYNGDLIVAFDLKSEE--FFE---VPLPHLENRDSGNLMYM-GNFSGC-LYFSCFCDYPEPVDIWIM 281 (378)
Q Consensus 209 ~G~lYwl~~~~~~~~~~~~il~fD~~~~~--~~~---i~~P~~~~~~~~~~~~l-~~~~G~-L~l~~~~~~~~~i~iW~l 281 (378)
+|..-|....+. ..|..|++..+. ... +.+|.... -..+ ...+|+ +|++..... .+.++.+
T Consensus 154 dg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~G-----PRh~~f~pdg~~~Yv~~e~s~--~v~v~~~ 221 (345)
T PF10282_consen 154 DGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGSG-----PRHLAFSPDGKYAYVVNELSN--TVSVFDY 221 (345)
T ss_dssp TSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTSS-----EEEEEE-TTSSEEEEEETTTT--EEEEEEE
T ss_pred CCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCCC-----CcEEEEcCCcCEEEEecCCCC--cEEEEee
Confidence 466666665543 358888886654 433 45666654 2233 333565 444443333 9999999
Q ss_pred cC---ceeeeEEEec--CccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC--CCCeEEEEEEE
Q 043816 282 KE---SWTKVFSFAG--GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL--QNQRAAGQVTV 350 (378)
Q Consensus 282 ~~---~W~~~~~i~~--~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~--~t~~~~~~v~~ 350 (378)
.. .+....+++. ..+.......-+.++++|+.|++.+ .....|..|++ ++++++ .++.
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn----------r~~~sI~vf~~d~~~g~l~-~~~~ 286 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN----------RGSNSISVFDLDPATGTLT-LVQT 286 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE----------CTTTEEEEEEECTTTTTEE-EEEE
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe----------ccCCEEEEEEEecCCCceE-EEEE
Confidence 83 7777777776 2222222455678889999888884 45678888876 667888 7763
No 57
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=86.02 E-value=6.7 Score=30.86 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=48.8
Q ss_pred EEEEEECCCc--eEeeecCCCCCCCCC---------CCeeEEEEeCCeEEEEEecCC--------CCcEEEEEEcC----
Q 043816 227 LIVAFDLKSE--EFFEVPLPHLENRDS---------GNLMYMGNFSGCLYFSCFCDY--------PEPVDIWIMKE---- 283 (378)
Q Consensus 227 ~il~fD~~~~--~~~~i~~P~~~~~~~---------~~~~~l~~~~G~L~l~~~~~~--------~~~i~iW~l~~---- 283 (378)
.|+.+|+..+ .++.|++|....... .....++..+|+|-++..... .-.+.+|.|+.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 4899999765 567788887653311 114456788999999876432 34799999976
Q ss_pred --ceeeeEEEec
Q 043816 284 --SWTKVFSFAG 293 (378)
Q Consensus 284 --~W~~~~~i~~ 293 (378)
+|.+-++++.
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 7999999987
No 58
>PLN02772 guanylate kinase
Probab=85.32 E-value=6.9 Score=37.08 Aligned_cols=76 Identities=9% Similarity=-0.023 Sum_probs=52.4
Q ss_pred CCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec----CCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEE
Q 043816 203 RDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP----LPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDI 278 (378)
Q Consensus 203 ~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~i 278 (378)
..+|.+++++|..++..+.......+..||..+.+|..-. .|..+. + +-.+..-+++|.++...... .=+|
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~---G-hSa~v~~~~rilv~~~~~~~-~~~~ 102 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK---G-YSAVVLNKDRILVIKKGSAP-DDSI 102 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC---c-ceEEEECCceEEEEeCCCCC-ccce
Confidence 3489999999999976654324457999999999998732 333332 2 44445557888888655443 5789
Q ss_pred EEEcC
Q 043816 279 WIMKE 283 (378)
Q Consensus 279 W~l~~ 283 (378)
|.|+-
T Consensus 103 w~l~~ 107 (398)
T PLN02772 103 WFLEV 107 (398)
T ss_pred EEEEc
Confidence 99864
No 59
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=84.98 E-value=3.4 Score=26.11 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=25.2
Q ss_pred CCeeEEEEEeCC-CCCCCCEEEEEECCCceEeee-cCCCCC
Q 043816 209 RGHVHWLVLNEP-EGYNGDLIVAFDLKSEEFFEV-PLPHLE 247 (378)
Q Consensus 209 ~G~lYwl~~~~~-~~~~~~~il~fD~~~~~~~~i-~~P~~~ 247 (378)
++.+|..++... .......+.+||+.+.+|+.+ ++|...
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence 356676666551 222234589999999999998 444443
No 60
>smart00612 Kelch Kelch domain.
Probab=84.72 E-value=3.1 Score=25.51 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCC
Q 043816 212 VHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHL 246 (378)
Q Consensus 212 lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~ 246 (378)
||.+++... ......+..||+.+++|+.+ ++|..
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCc
Confidence 455554432 11234588999999999887 44543
No 61
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=84.69 E-value=26 Score=30.44 Aligned_cols=120 Identities=9% Similarity=0.110 Sum_probs=65.8
Q ss_pred EECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCC-eeEEEEe--CC--eEEEEEec---CCCCcEEE
Q 043816 207 FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGN-LMYMGNF--SG--CLYFSCFC---DYPEPVDI 278 (378)
Q Consensus 207 ~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~-~~~l~~~--~G--~L~l~~~~---~~~~~i~i 278 (378)
.+||-+ .+... ..+.+.|+.++++..++.|......... ...++-. .+ |+..+... .....++|
T Consensus 3 sCnGLl-c~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLI-CFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEE-EEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 468887 33322 2499999999999999766432110110 1222221 12 44443332 12248899
Q ss_pred EEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCC-cEEEEEECCCCeEEEE
Q 043816 279 WIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK-WELDWYDLQNQRAAGQ 347 (378)
Q Consensus 279 W~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~-~~l~~yd~~t~~~~~~ 347 (378)
+.++. +|........ ... .... ++.-+|.+-++... + .... ..++.||+++.+++ +
T Consensus 75 ys~~~~~Wr~~~~~~~-~~~---~~~~-~v~~~G~lyw~~~~---~----~~~~~~~IvsFDl~~E~f~-~ 132 (230)
T TIGR01640 75 YTLGSNSWRTIECSPP-HHP---LKSR-GVCINGVLYYLAYT---L----KTNPDYFIVSFDVSSERFK-E 132 (230)
T ss_pred EEeCCCCccccccCCC-Ccc---ccCC-eEEECCEEEEEEEE---C----CCCCcEEEEEEEcccceEe-e
Confidence 99988 9998763221 111 1111 44446665555521 0 0011 27999999999999 7
No 62
>smart00612 Kelch Kelch domain.
Probab=84.66 E-value=2 Score=26.36 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.9
Q ss_pred cccEEEEEEcCCCceEEeeccCCc
Q 043816 174 EYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 174 ~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
....+++|+.+++.|+..+ .+|.
T Consensus 13 ~~~~v~~yd~~~~~W~~~~-~~~~ 35 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLP-SMPT 35 (47)
T ss_pred eeeeEEEECCCCCeEccCC-CCCC
Confidence 3567899999999999988 6554
No 63
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=84.30 E-value=1.8 Score=27.35 Aligned_cols=22 Identities=14% Similarity=0.519 Sum_probs=14.3
Q ss_pred cccEEEEEEcCCCceEEeeccCC
Q 043816 174 EYTEIAVYSLKSNSSRRIRVDFP 196 (378)
Q Consensus 174 ~~~~~~vyss~t~~W~~~~~~~p 196 (378)
....+++|+..+++|+.++ .+|
T Consensus 27 ~~~d~~~~d~~~~~W~~~~-~~P 48 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRLP-SMP 48 (49)
T ss_dssp E---EEEEETTTTEEEE---SS-
T ss_pred ccCCEEEEECCCCEEEECC-CCC
Confidence 5678899999999999997 555
No 64
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=84.15 E-value=34 Score=31.45 Aligned_cols=137 Identities=9% Similarity=0.088 Sum_probs=69.8
Q ss_pred ccEEEEEEcCC-CceEEeeccCCccccCCCCceEE--CCe-eEEEEEeCCCCCCCCEEEEEECC-CceEeeec-CCCCCC
Q 043816 175 YTEIAVYSLKS-NSSRRIRVDFPYYFSHPRDGTFA--RGH-VHWLVLNEPEGYNGDLIVAFDLK-SEEFFEVP-LPHLEN 248 (378)
Q Consensus 175 ~~~~~vyss~t-~~W~~~~~~~p~~~~~~~~~v~~--~G~-lYwl~~~~~~~~~~~~il~fD~~-~~~~~~i~-~P~~~~ 248 (378)
...+.+|+..+ +.++.+. ..+.. ..-..+.+ +|. +|.-.... ..|.+|++. +..+..+. .|....
T Consensus 11 ~~~I~~~~~~~~g~l~~~~-~~~~~--~~~~~l~~spd~~~lyv~~~~~------~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQ-VVDVP--GQVQPMVISPDKRHLYVGVRPE------FRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred CCCEEEEEECCCCceeeee-EEecC--CCCccEEECCCCCEEEEEECCC------CcEEEEEECCCCceEEeeeecCCCC
Confidence 34567777754 5777666 33211 11113333 465 45533221 348888886 44555442 222111
Q ss_pred CCCCCeeEEEE-eCCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCc
Q 043816 249 RDSGNLMYMGN-FSGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDED 324 (378)
Q Consensus 249 ~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~ 324 (378)
-..++. .+|+..++..... ..+.+|.+++ .......+.. .....-+++.++|+.+++..
T Consensus 82 -----p~~i~~~~~g~~l~v~~~~~-~~v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~p~g~~l~v~~------ 144 (330)
T PRK11028 82 -----PTHISTDHQGRFLFSASYNA-NCVSVSPLDKDGIPVAPIQIIEG-----LEGCHSANIDPDNRTLWVPC------ 144 (330)
T ss_pred -----ceEEEECCCCCEEEEEEcCC-CeEEEEEECCCCCCCCceeeccC-----CCcccEeEeCCCCCEEEEee------
Confidence 223333 3566555544332 3899999864 2222222221 11122355677888777774
Q ss_pred cccccCCcEEEEEECCC
Q 043816 325 EDEGINKWELDWYDLQN 341 (378)
Q Consensus 325 ~~~~~~~~~l~~yd~~t 341 (378)
...+.+.+||+++
T Consensus 145 ----~~~~~v~v~d~~~ 157 (330)
T PRK11028 145 ----LKEDRIRLFTLSD 157 (330)
T ss_pred ----CCCCEEEEEEECC
Confidence 3567888888876
No 65
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=83.57 E-value=31 Score=30.56 Aligned_cols=187 Identities=10% Similarity=0.007 Sum_probs=88.7
Q ss_pred CCceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccC
Q 043816 117 GENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDF 195 (378)
Q Consensus 117 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 195 (378)
..+.+.++|+.+++... ++... . ...+.+++.++ +++.... ....+.+|+.++.. .+. .+
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~------~--~~~~~~~~~g~--~l~~~~~------~~~~l~~~d~~~~~--~~~-~~ 111 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGP------D--PELFALHPNGK--ILYIANE------DDNLVTVIDIETRK--VLA-EI 111 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCC------C--ccEEEECCCCC--EEEEEcC------CCCeEEEEECCCCe--EEe-Ee
Confidence 45679999999987654 43321 1 12345666543 2222111 12367888887653 111 11
Q ss_pred CccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCC
Q 043816 196 PYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPE 274 (378)
Q Consensus 196 p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~ 274 (378)
+.......-.+.-+|.+.+.+.... ..+..+|..+..... +..+... . ... ...+|+..++..... .
T Consensus 112 ~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~----~-~~~-~s~dg~~l~~~~~~~-~ 179 (300)
T TIGR03866 112 PVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP----R-FAE-FTADGKELWVSSEIG-G 179 (300)
T ss_pred eCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc----c-EEE-ECCCCCEEEEEcCCC-C
Confidence 1110000012223566655544321 135667887654322 2221111 1 221 223555444443322 2
Q ss_pred cEEEEEEcCceeeeEEEec--Cccc-cceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 275 PVDIWIMKESWTKVFSFAG--GVFG-IFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 275 ~i~iW~l~~~W~~~~~i~~--~~~~-~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
.+.+|.++. .....++.. .... .......+.+.++|+.+++.. .....+..||+++.+..
T Consensus 180 ~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~----------~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 180 TVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL----------GPANRVAVVDAKTYEVL 242 (300)
T ss_pred EEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEEEEEc----------CCCCeEEEEECCCCcEE
Confidence 899998876 112222322 1000 000111255677888777652 24567999999988776
No 66
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.84 E-value=34 Score=30.76 Aligned_cols=126 Identities=16% Similarity=0.154 Sum_probs=75.7
Q ss_pred eeEeecccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEE
Q 043816 102 TPIIDTCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAV 180 (378)
Q Consensus 102 ~~~~~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~v 180 (378)
+-+++.-+|-|-+.. ..+.+...||.++.-..+|++...... .-....|+... +.+.. .....+..
T Consensus 192 yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g----sRriwsdpig~----~witt-----wg~g~l~r 258 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG----SRRIWSDPIGR----AWITT-----WGTGSLHR 258 (353)
T ss_pred cceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccc----ccccccCccCc----EEEec-----cCCceeeE
Confidence 345556667665554 345677889999988888887753221 11123333221 22221 12457788
Q ss_pred EEcCCCceEEeeccCCccccCCCCceEECC-eeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCC
Q 043816 181 YSLKSNSSRRIRVDFPYYFSHPRDGTFARG-HVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLEN 248 (378)
Q Consensus 181 yss~t~~W~~~~~~~p~~~~~~~~~v~~~G-~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~ 248 (378)
|+..+.+|.+-. +|....... +++++. -.-|+..-+ ...|..||+++++|+.++.|..-.
T Consensus 259 fdPs~~sW~eyp--LPgs~arpy-s~rVD~~grVW~sea~-----agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 259 FDPSVTSWIEYP--LPGSKARPY-SMRVDRHGRVWLSEAD-----AGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred eCcccccceeee--CCCCCCCcc-eeeeccCCcEEeeccc-----cCceeecCcccceEEEecCCCCCC
Confidence 999998998866 443322222 444443 345664332 235999999999999998886543
No 67
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.60 E-value=32 Score=33.57 Aligned_cols=161 Identities=11% Similarity=0.143 Sum_probs=78.3
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC--ceEEeeccCC
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN--SSRRIRVDFP 196 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~--~W~~~~~~~p 196 (378)
++++|+|-.|+||.. |....+. ...+.++|+--.+. ++++|...- ....+.=+.|.+..- .|+.+....|
T Consensus 57 DELHvYNTatnqWf~-PavrGDi---PpgcAA~GfvcdGt--rilvFGGMv--EYGkYsNdLYELQasRWeWkrlkp~~p 128 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDI---PPGCAAFGFVCDGT--RILVFGGMV--EYGKYSNDLYELQASRWEWKRLKPKTP 128 (830)
T ss_pred hhhhhhccccceeec-chhcCCC---CCchhhcceEecCc--eEEEEccEe--eeccccchHHHhhhhhhhHhhcCCCCC
Confidence 479999999999974 4333222 23444555544344 333333211 012345567777664 5565542222
Q ss_pred cc-----ccCCCCceEECCeeEEEEEeCCCCCC--------CCEEEEEECC--Cc--eEeee----cCCCCCCCCCCCee
Q 043816 197 YY-----FSHPRDGTFARGHVHWLVLNEPEGYN--------GDLIVAFDLK--SE--EFFEV----PLPHLENRDSGNLM 255 (378)
Q Consensus 197 ~~-----~~~~~~~v~~~G~lYwl~~~~~~~~~--------~~~il~fD~~--~~--~~~~i----~~P~~~~~~~~~~~ 255 (378)
.. ...+.+-+....+.|.+++-.++... -.-+..+++. .. .|... .+|...+.+.. .
T Consensus 129 ~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTA--V 206 (830)
T KOG4152|consen 129 KNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTA--V 206 (830)
T ss_pred CCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccccee--E
Confidence 11 11222234556788988865432211 1124444443 33 34431 35555553111 1
Q ss_pred EEEEeCC---eEEEEEecCCCCcEEEEEEcC---ceeeeE
Q 043816 256 YMGNFSG---CLYFSCFCDYPEPVDIWIMKE---SWTKVF 289 (378)
Q Consensus 256 ~l~~~~G---~L~l~~~~~~~~~i~iW~l~~---~W~~~~ 289 (378)
-..+.+. ++++.++-....-=++|.|+- .|.+-.
T Consensus 207 iY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 207 IYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred EEEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 1123332 344433323333557999975 899864
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.19 E-value=47 Score=31.58 Aligned_cols=30 Identities=30% Similarity=0.291 Sum_probs=21.8
Q ss_pred CceEECCeeEEEEEeCCCCCCCCEEEEEECCCc--eEee
Q 043816 204 DGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSE--EFFE 240 (378)
Q Consensus 204 ~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~--~~~~ 240 (378)
.++..+|.+|.....+ .+.++|+.+. .|+.
T Consensus 251 sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 251 TPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR 282 (394)
T ss_pred CcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee
Confidence 4678899999866443 4999999764 5654
No 69
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.33 E-value=38 Score=31.47 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=67.3
Q ss_pred CceEEC--CeeEEEEEeCCCCCCCCEEEEEECCCceEeee---cCCCCCCC----CCCCeeEEE---EeCCeEEEEEecC
Q 043816 204 DGTFAR--GHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV---PLPHLENR----DSGNLMYMG---NFSGCLYFSCFCD 271 (378)
Q Consensus 204 ~~v~~~--G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~~~----~~~~~~~l~---~~~G~L~l~~~~~ 271 (378)
.+++.+ |.+||.+.++ .|...|++.+.-... .+-...+. .++ ..++. ...|+|+++.-..
T Consensus 188 ~~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG-G~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG-GWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp --EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--SSS-EEEETTTTEEEEEEEE-
T ss_pred ccceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCc-ceeeeeeccccCeEEEEecCC
Confidence 355543 5788887665 499999987753332 11111100 011 22332 3367999875322
Q ss_pred -----CCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 272 -----YPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 272 -----~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
....=+||+++- .=.++.+|+++ .....+++..+.+=+|+.-. ..+..|++||..|++..
T Consensus 260 ~~gsHKdpgteVWv~D~~t~krv~Ri~l~-----~~~~Si~Vsqd~~P~L~~~~---------~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLKTHKRVARIPLE-----HPIDSIAVSQDDKPLLYALS---------AGDGTLDVYDAATGKLV 325 (342)
T ss_dssp -TT-TTS-EEEEEEEETTTTEEEEEEEEE-----EEESEEEEESSSS-EEEEEE---------TTTTEEEEEETTT--EE
T ss_pred CCCCccCCceEEEEEECCCCeEEEEEeCC-----CccceEEEccCCCcEEEEEc---------CCCCeEEEEeCcCCcEE
Confidence 113789999987 55677888861 11224777777664554410 24678999999999887
Q ss_pred EE
Q 043816 346 GQ 347 (378)
Q Consensus 346 ~~ 347 (378)
++
T Consensus 326 ~~ 327 (342)
T PF06433_consen 326 RS 327 (342)
T ss_dssp EE
T ss_pred ee
Confidence 33
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.95 E-value=51 Score=31.73 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=102.4
Q ss_pred cCCCcceeec--CCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE-eeccCCccccC
Q 043816 125 NPSTKKHVLL--PKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR-IRVDFPYYFSH 201 (378)
Q Consensus 125 NP~T~~~~~L--P~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~p~~~~~ 201 (378)
+|-++.|... |+.+.. ......+.+.|... |.++... ..++++|++.+..=+. +. .+-. .-
T Consensus 8 t~e~~~w~~~~~~~~~ke----~~~vssl~fsp~~P-~d~aVt~--------S~rvqly~~~~~~~~k~~s-rFk~--~v 71 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKE----HNSVSSLCFSPKHP-YDFAVTS--------SVRVQLYSSVTRSVRKTFS-RFKD--VV 71 (487)
T ss_pred Cccchhhhhhcccccccc----cCcceeEecCCCCC-CceEEec--------ccEEEEEecchhhhhhhHH-hhcc--ce
Confidence 5666677654 333322 45666777777543 2333332 4678999998764221 11 1000 00
Q ss_pred CCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEE
Q 043816 202 PRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWI 280 (378)
Q Consensus 202 ~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~ 280 (378)
..-.+..+|.+...++.. ..|-+||..+... +.+..-..... ......-++.+.+.+.++. .+.+|.
T Consensus 72 ~s~~fR~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~apv~----~~~f~~~d~t~l~s~sDd~--v~k~~d 139 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAPVH----VTKFSPQDNTMLVSGSDDK--VVKYWD 139 (487)
T ss_pred eEEEeecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCcee----EEEecccCCeEEEecCCCc--eEEEEE
Confidence 111345569998776543 3599999555221 22221111110 2333444566666555555 899999
Q ss_pred EcCceeeeEEEecCccccceeeEEEEEeecCC-EEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEeccCCCcee
Q 043816 281 MKESWTKVFSFAGGVFGIFTYAKALAYSKSGD-KVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRY 359 (378)
Q Consensus 281 l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~~~~~~~ 359 (378)
+...-+ ...+.- --...+-..+.+..+ +++-. ..++.+-.||.++..-+ .++++.... -.
T Consensus 140 ~s~a~v-~~~l~~----htDYVR~g~~~~~~~hivvtG-----------sYDg~vrl~DtR~~~~~-v~elnhg~p--Ve 200 (487)
T KOG0310|consen 140 LSTAYV-QAELSG----HTDYVRCGDISPANDHIVVTG-----------SYDGKVRLWDTRSLTSR-VVELNHGCP--VE 200 (487)
T ss_pred cCCcEE-EEEecC----CcceeEeeccccCCCeEEEec-----------CCCceEEEEEeccCCce-eEEecCCCc--ee
Confidence 977212 333332 112233334444334 44444 57889999999999755 555554333 34
Q ss_pred EEEEEec
Q 043816 360 TMIYVDS 366 (378)
Q Consensus 360 ~~~y~~s 366 (378)
.+.|.+|
T Consensus 201 ~vl~lps 207 (487)
T KOG0310|consen 201 SVLALPS 207 (487)
T ss_pred eEEEcCC
Confidence 5566654
No 71
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=78.56 E-value=3.9 Score=25.82 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=18.2
Q ss_pred CCcccEEEEEEcCCCceEEee
Q 043816 172 KVEYTEIAVYSLKSNSSRRIR 192 (378)
Q Consensus 172 ~~~~~~~~vyss~t~~W~~~~ 192 (378)
......+++|+.++++|+.++
T Consensus 26 ~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 26 GSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CcccceeEEEECCCCEEeecC
Confidence 346788999999999999987
No 72
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=74.66 E-value=58 Score=28.45 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=80.6
Q ss_pred EEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCE
Q 043816 150 GFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDL 227 (378)
Q Consensus 150 ~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~ 227 (378)
+..+|+..+.+.++-+ ....+..++..++.-+.... +. ....+.. +|.+|.-....
T Consensus 4 gp~~d~~~g~l~~~D~--------~~~~i~~~~~~~~~~~~~~~--~~----~~G~~~~~~~g~l~v~~~~~-------- 61 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDI--------PGGRIYRVDPDTGEVEVIDL--PG----PNGMAFDRPDGRLYVADSGG-------- 61 (246)
T ss_dssp EEEEETTTTEEEEEET--------TTTEEEEEETTTTEEEEEES--SS----EEEEEEECTTSEEEEEETTC--------
T ss_pred ceEEECCCCEEEEEEc--------CCCEEEEEECCCCeEEEEec--CC----CceEEEEccCCEEEEEEcCc--------
Confidence 4456665554444322 24567777777776655541 11 1112222 57777654332
Q ss_pred EEEEECCCceEeee-cCCCCCCCCCCCee-EE-EEeCCeEEEEEecCCCCc----EEEEEEcCceeeeEEEecCccccce
Q 043816 228 IVAFDLKSEEFFEV-PLPHLENRDSGNLM-YM-GNFSGCLYFSCFCDYPEP----VDIWIMKESWTKVFSFAGGVFGIFT 300 (378)
Q Consensus 228 il~fD~~~~~~~~i-~~P~~~~~~~~~~~-~l-~~~~G~L~l~~~~~~~~~----i~iW~l~~~W~~~~~i~~~~~~~~~ 300 (378)
+..+|+.+.+++.+ ..|..... .. .. .+ +..+|+|++......... =.||.++.. .++..+.. ...
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~-~~-~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----~~~ 134 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVP-FN-RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----GLG 134 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSC-TE-EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----EES
T ss_pred eEEEecCCCcEEEEeeccCCCcc-cC-CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec----Ccc
Confidence 67779999988776 44322211 00 22 23 344688888876543211 357776652 11111111 012
Q ss_pred eeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 301 YAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 301 ~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
...-+++.++|+.|++.. ....+++.|++.
T Consensus 135 ~pNGi~~s~dg~~lyv~d----------s~~~~i~~~~~~ 164 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVAD----------SFNGRIWRFDLD 164 (246)
T ss_dssp SEEEEEEETTSSEEEEEE----------TTTTEEEEEEEE
T ss_pred cccceEECCcchheeecc----------cccceeEEEecc
Confidence 233477778888888774 467789999885
No 73
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=74.40 E-value=3.9 Score=25.82 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.0
Q ss_pred ceEEEEcCCCcceeecCCCCCCC
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDF 141 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~ 141 (378)
+.++++||.|++|.+++..|..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 46999999999999997766543
No 74
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.43 E-value=16 Score=33.93 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=53.5
Q ss_pred CceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCC----CCEEEEEECCCceEeee--cCCCCCCCCCCCeeEEEE
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYN----GDLIVAFDLKSEEFFEV--PLPHLENRDSGNLMYMGN 259 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~----~~~il~fD~~~~~~~~i--~~P~~~~~~~~~~~~l~~ 259 (378)
..|+.++ .+|.......-.+.++|.||..++.+...+. -..+..||+.+++|.++ ..|.... ...-..
T Consensus 70 k~W~~~a-~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~-----G~~~~~ 143 (381)
T COG3055 70 KGWTKIA-DFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLV-----GASTFS 143 (381)
T ss_pred CCceEcc-cCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccc-----cceeEe
Confidence 4799999 7776544444478999999999977643321 13378899999999987 4666533 233344
Q ss_pred eCC-eEEEEEec
Q 043816 260 FSG-CLYFSCFC 270 (378)
Q Consensus 260 ~~G-~L~l~~~~ 270 (378)
.++ ++++....
T Consensus 144 ~~~~~i~f~GGv 155 (381)
T COG3055 144 LNGTKIYFFGGV 155 (381)
T ss_pred cCCceEEEEccc
Confidence 455 77777653
No 75
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=69.19 E-value=73 Score=27.31 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=71.0
Q ss_pred cEEEEEEcCCC--ceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCce-EeeecCCCCCCCCCC
Q 043816 176 TEIAVYSLKSN--SSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE-FFEVPLPHLENRDSG 252 (378)
Q Consensus 176 ~~~~vyss~t~--~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~ 252 (378)
..+..++..++ .|+..- ..... ......+..+|.+|..... ..|.++|..+.+ -....+|.....
T Consensus 3 g~l~~~d~~tG~~~W~~~~-~~~~~-~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~--- 70 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL-GPGIG-GPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPGPISG--- 70 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC-SSSCS-SEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSSCGGS---
T ss_pred CEEEEEECCCCCEEEEEEC-CCCCC-CccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeeccccccc---
Confidence 35677787776 487733 11100 0001134477888877322 359999985543 233444443321
Q ss_pred CeeEEEEeCCeEEEEEecCCCCcEEEEEEcC---ceee-eEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccc
Q 043816 253 NLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE---SWTK-VFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEG 328 (378)
Q Consensus 253 ~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~---~W~~-~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~ 328 (378)
. ....++.+++..... .+..+..++ .|.. ...-+.. . ..........++.+++.
T Consensus 71 -~--~~~~~~~v~v~~~~~---~l~~~d~~tG~~~W~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~----------- 128 (238)
T PF13360_consen 71 -A--PVVDGGRVYVGTSDG---SLYALDAKTGKVLWSIYLTSSPPA--G---VRSSSSPAVDGDRLYVG----------- 128 (238)
T ss_dssp -G--EEEETTEEEEEETTS---EEEEEETTTSCEEEEEEE-SSCTC--S---TB--SEEEEETTEEEEE-----------
T ss_pred -e--eeeccccccccccee---eeEecccCCcceeeeecccccccc--c---cccccCceEecCEEEEE-----------
Confidence 1 366677777766221 333333233 6773 3221211 1 11111122236777777
Q ss_pred cCCcEEEEEECCCCeEE
Q 043816 329 INKWELDWYDLQNQRAA 345 (378)
Q Consensus 329 ~~~~~l~~yd~~t~~~~ 345 (378)
...+.++.+|+++++..
T Consensus 129 ~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 129 TSSGKLVALDPKTGKLL 145 (238)
T ss_dssp ETCSEEEEEETTTTEEE
T ss_pred eccCcEEEEecCCCcEE
Confidence 35889999999999886
No 76
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=68.56 E-value=1.1e+02 Score=28.88 Aligned_cols=122 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred eEECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEe---------cCCCCc
Q 043816 206 TFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCF---------CDYPEP 275 (378)
Q Consensus 206 v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~---------~~~~~~ 275 (378)
|++...-+|-.... |.++|..+.+. .+|+.-.... .. +..-+..||++.. ... .
T Consensus 15 v~V~d~~~~~~~~~--------v~ViD~~~~~v~g~i~~G~~P~-----~~-~spDg~~lyva~~~~~R~~~G~~~d--~ 78 (352)
T TIGR02658 15 VYVLDPGHFAATTQ--------VYTIDGEAGRVLGMTDGGFLPN-----PV-VASDGSFFAHASTVYSRIARGKRTD--Y 78 (352)
T ss_pred EEEECCcccccCce--------EEEEECCCCEEEEEEEccCCCc-----ee-ECCCCCEEEEEeccccccccCCCCC--E
Q ss_pred EEEEEEcC-ceeeeEEEec-CccccceeeEEEEEeecCCEEEEeeccCCCccccccC-CcEEEEEECCCCeEEEEEEEec
Q 043816 276 VDIWIMKE-SWTKVFSFAG-GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN-KWELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 276 i~iW~l~~-~W~~~~~i~~-~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~-~~~l~~yd~~t~~~~~~v~~~~ 352 (378)
+++|-.+. .=...-.++. +.+.......-++++++|..+++.+ .. ...+.+.|+++++..++|.+.+
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n----------~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ----------FSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec----------CCCCCEEEEEECCCCcEEEEEeCCC
Q ss_pred c
Q 043816 353 V 353 (378)
Q Consensus 353 ~ 353 (378)
.
T Consensus 149 ~ 149 (352)
T TIGR02658 149 C 149 (352)
T ss_pred C
No 77
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=68.32 E-value=50 Score=33.57 Aligned_cols=95 Identities=13% Similarity=0.232 Sum_probs=57.2
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCCCeeE-E-EEeCCeEEEEEecCCCCcEEEEEEcC-----ceeeeEEEecCccccc
Q 043816 227 LIVAFDLKSEEFFEVPLPHLENRDSGNLMY-M-GNFSGCLYFSCFCDYPEPVDIWIMKE-----SWTKVFSFAGGVFGIF 299 (378)
Q Consensus 227 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~-l-~~~~G~L~l~~~~~~~~~i~iW~l~~-----~W~~~~~i~~~~~~~~ 299 (378)
.|...|+++.+-. +|.....+.+ .+. + ...++...+.....+ -+.+|.++. +|.-.|.=|.
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d-~ita~~l~~d~~~L~~a~rs~--llrv~~L~tgk~irswKa~He~Pv------ 108 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDED-EITALALTPDEEVLVTASRSQ--LLRVWSLPTGKLIRSWKAIHEAPV------ 108 (775)
T ss_pred eEEEEEccCCcee---cccCCccchh-hhheeeecCCccEEEEeeccc--eEEEEEcccchHhHhHhhccCCCe------
Confidence 4888999888776 5554443222 222 2 334454444444445 899999987 7877665554
Q ss_pred eeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEE
Q 043816 300 TYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQ 347 (378)
Q Consensus 300 ~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~ 347 (378)
-.+++.+.|..+--. ..++.+-+||.+.+...|.
T Consensus 109 ---i~ma~~~~g~LlAtg-----------gaD~~v~VWdi~~~~~th~ 142 (775)
T KOG0319|consen 109 ---ITMAFDPTGTLLATG-----------GADGRVKVWDIKNGYCTHS 142 (775)
T ss_pred ---EEEEEcCCCceEEec-----------cccceEEEEEeeCCEEEEE
Confidence 224555555322222 4677888888888888754
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=67.19 E-value=1.2e+02 Score=29.18 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=63.0
Q ss_pred EECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCC-eEEEEEecCCCCcEEEEEEcC-c
Q 043816 207 FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSG-CLYFSCFCDYPEPVDIWIMKE-S 284 (378)
Q Consensus 207 ~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G-~L~l~~~~~~~~~i~iW~l~~-~ 284 (378)
.++..|.+.............|...|.....-+.+........ .....- +| +|.++........+.+|.++. .
T Consensus 163 ~f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~----~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~ 237 (435)
T PRK05137 163 YFDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVL----TPRFSP-NRQEITYMSYANGRPRVYLLDLETGQ 237 (435)
T ss_pred cCCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeE----eeEECC-CCCEEEEEEecCCCCEEEEEECCCCc
Confidence 4567888876543211124568888887655444432111110 122222 44 566665444334677776655 3
Q ss_pred eeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 285 WTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 285 W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
...+...+. ......+.++|+.|++.... .....++.+|+++++.+ .+.
T Consensus 238 ~~~l~~~~g-------~~~~~~~SPDG~~la~~~~~--------~g~~~Iy~~d~~~~~~~-~Lt 286 (435)
T PRK05137 238 RELVGNFPG-------MTFAPRFSPDGRKVVMSLSQ--------GGNTDIYTMDLRSGTTT-RLT 286 (435)
T ss_pred EEEeecCCC-------cccCcEECCCCCEEEEEEec--------CCCceEEEEECCCCceE-Ecc
Confidence 322211111 11123456788877655210 12457999999999888 654
No 79
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=66.41 E-value=36 Score=32.39 Aligned_cols=135 Identities=24% Similarity=0.246 Sum_probs=74.9
Q ss_pred cceEEeecC-----CceEEEEcCCCcceeecCCCCCCC---CCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEE
Q 043816 109 NGLIALKNG-----ENDIALWNPSTKKHVLLPKFWSDF---DDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAV 180 (378)
Q Consensus 109 ~Gll~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~---~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~v 180 (378)
+.|+++.-. .-+++|+|..|++..+|....... +......+.-||--.++++|++-.... ...++
T Consensus 238 G~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~~------~l~F~- 310 (448)
T PF12458_consen 238 GNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDMD------GLEFE- 310 (448)
T ss_pred CcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccCC------CceEE-
Confidence 567777662 237999999999999987654321 111344444555555677776543210 00000
Q ss_pred EEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe
Q 043816 181 YSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF 260 (378)
Q Consensus 181 yss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~ 260 (378)
|.+. -|.. ..++|....... ..+.++.||+-..+ +.-|..+ ...-.--
T Consensus 311 --------r~vr--SPNG----------EDvLYvF~~~~~---g~~~Ll~YN~I~k~---v~tPi~c------hG~alf~ 358 (448)
T PF12458_consen 311 --------RKVR--SPNG----------EDVLYVFYAREE---GRYLLLPYNLIRKE---VATPIIC------HGYALFE 358 (448)
T ss_pred --------EEec--CCCC----------ceEEEEEEECCC---CcEEEEechhhhhh---hcCCeec------cceeEec
Confidence 1111 1110 136777665543 45678888886644 3334333 3334455
Q ss_pred CCeEEEEEec-CCC---CcEEEEEEc
Q 043816 261 SGCLYFSCFC-DYP---EPVDIWIMK 282 (378)
Q Consensus 261 ~G~L~l~~~~-~~~---~~i~iW~l~ 282 (378)
+|+|++.... +.+ --|+||..-
T Consensus 359 DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 359 DGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred CCEEEEEecCCCCcceeccceeecCC
Confidence 7999998876 332 258888763
No 80
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=66.16 E-value=16 Score=27.57 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=30.4
Q ss_pred ceEEEEcCCCc-ceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEE
Q 043816 119 NDIALWNPSTK-KHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLI 166 (378)
Q Consensus 119 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~ 166 (378)
..++++||.|+ .|.. ..+ ......+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~WvP--s~~------~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWIP--ASK------HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeEe--CCC------CceeEEEEecCCCcEEEEEEec
Confidence 36899999997 7663 332 2457778889999999999865
No 81
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=65.60 E-value=1e+02 Score=27.63 Aligned_cols=150 Identities=14% Similarity=0.075 Sum_probs=77.1
Q ss_pred ccEEEEEEcC-CCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeee---cCCCCCC
Q 043816 175 YTEIAVYSLK-SNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV---PLPHLEN 248 (378)
Q Consensus 175 ~~~~~vyss~-t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~~ 248 (378)
...+.|++.. .++|.... .+.......-..|.. .|. |..+...+. .+..+--....|..+ +.|....
T Consensus 36 Dk~vriw~~~~~~s~~ck~-vld~~hkrsVRsvAwsp~g~-~La~aSFD~-----t~~Iw~k~~~efecv~~lEGHEnEV 108 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKT-VLDDGHKRSVRSVAWSPHGR-YLASASFDA-----TVVIWKKEDGEFECVATLEGHENEV 108 (312)
T ss_pred CceEEEEecCCCCcEEEEE-eccccchheeeeeeecCCCc-EEEEeeccc-----eEEEeecCCCceeEEeeeeccccce
Confidence 4567788877 67898876 332221111113333 455 333333221 244444445566553 3443332
Q ss_pred CCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccc
Q 043816 249 RDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDED 326 (378)
Q Consensus 249 ~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~ 326 (378)
..-.-..+|.+...+..+. .+-||+.++ +-.-...+.. -.+..+.+..++..++|+-.+
T Consensus 109 -----K~Vaws~sG~~LATCSRDK--SVWiWe~deddEfec~aVL~~----HtqDVK~V~WHPt~dlL~S~S-------- 169 (312)
T KOG0645|consen 109 -----KCVAWSASGNYLATCSRDK--SVWIWEIDEDDEFECIAVLQE----HTQDVKHVIWHPTEDLLFSCS-------- 169 (312)
T ss_pred -----eEEEEcCCCCEEEEeeCCC--eEEEEEecCCCcEEEEeeecc----ccccccEEEEcCCcceeEEec--------
Confidence 2222333555555555555 899999886 5554454443 123344555566666666663
Q ss_pred cccCCcEEEEEECC-CCeEEEEEE-EeccC
Q 043816 327 EGINKWELDWYDLQ-NQRAAGQVT-VHGVP 354 (378)
Q Consensus 327 ~~~~~~~l~~yd~~-t~~~~~~v~-~~~~~ 354 (378)
.+..+-+|.-. .+.|+ -++ +.+..
T Consensus 170 ---YDnTIk~~~~~~dddW~-c~~tl~g~~ 195 (312)
T KOG0645|consen 170 ---YDNTIKVYRDEDDDDWE-CVQTLDGHE 195 (312)
T ss_pred ---cCCeEEEEeecCCCCee-EEEEecCcc
Confidence 45566666554 66666 554 44433
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=65.40 E-value=1.3e+02 Score=28.81 Aligned_cols=116 Identities=10% Similarity=0.122 Sum_probs=75.5
Q ss_pred ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC-
Q 043816 205 GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE- 283 (378)
Q Consensus 205 ~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~- 283 (378)
.++=+|-|+-.+..+. .+-.+|+.+.. ..-.+|..... --.+...++.-+|+...++. .+.+|.|..
T Consensus 354 ~fHpDgLifgtgt~d~------~vkiwdlks~~-~~a~Fpght~~----vk~i~FsENGY~Lat~add~-~V~lwDLRKl 421 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDG------VVKIWDLKSQT-NVAKFPGHTGP----VKAISFSENGYWLATAADDG-SVKLWDLRKL 421 (506)
T ss_pred eEcCCceEEeccCCCc------eEEEEEcCCcc-ccccCCCCCCc----eeEEEeccCceEEEEEecCC-eEEEEEehhh
Confidence 3444677776654442 47889998876 44567764432 44566667788888887775 599999976
Q ss_pred ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 284 SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 284 ~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
.=. .++.++. ......+.+...|..+.+. ..+-+++.|+-+++.|+ ++.
T Consensus 422 ~n~--kt~~l~~---~~~v~s~~fD~SGt~L~~~-----------g~~l~Vy~~~k~~k~W~-~~~ 470 (506)
T KOG0289|consen 422 KNF--KTIQLDE---KKEVNSLSFDQSGTYLGIA-----------GSDLQVYICKKKTKSWT-EIK 470 (506)
T ss_pred ccc--ceeeccc---cccceeEEEcCCCCeEEee-----------cceeEEEEEecccccce-eee
Confidence 312 2233211 1223446666677766666 57788999999999999 877
No 83
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.17 E-value=97 Score=27.23 Aligned_cols=186 Identities=14% Similarity=0.146 Sum_probs=92.2
Q ss_pred cceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC-
Q 043816 109 NGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN- 186 (378)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~- 186 (378)
+|--|+.. .+..+-+|||..+...+-=..... ...-.+..+|.+ |+.. + .....+.+++..|+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~----EVlD~~~s~Dns----kf~s-----~--GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH----EVLDAALSSDNS----KFAS-----C--GGDKAVQVWDVNTGK 92 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCCc----eeeecccccccc----cccc-----C--CCCceEEEEEcccCe
Confidence 44445544 356899999998875532111110 112222222221 1110 0 12456778888776
Q ss_pred ---ceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCe
Q 043816 187 ---SSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGC 263 (378)
Q Consensus 187 ---~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~ 263 (378)
+||..............++|.+.|.+= ..|-++|-.++.+++|+.=....+ ...-....+.
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD------------~s~r~wDCRS~s~ePiQildea~D----~V~Si~v~~h 156 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFD------------SSVRLWDCRSRSFEPIQILDEAKD----GVSSIDVAEH 156 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEecccc------------ceeEEEEcccCCCCccchhhhhcC----ceeEEEeccc
Confidence 454433111110111122455544421 248889988888888765444432 3444455565
Q ss_pred EEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 264 LYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
..+.+.-+. ++..+.+.. -++..+.++. ...-+.+.++|+.++... -+..+-..|-+|++
T Consensus 157 eIvaGS~DG--tvRtydiR~-----G~l~sDy~g~--pit~vs~s~d~nc~La~~-----------l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 157 EIVAGSVDG--TVRTYDIRK-----GTLSSDYFGH--PITSVSFSKDGNCSLASS-----------LDSTLRLLDKETGK 216 (307)
T ss_pred EEEeeccCC--cEEEEEeec-----ceeehhhcCC--cceeEEecCCCCEEEEee-----------ccceeeecccchhH
Confidence 656555444 444443322 1111111211 122355667888777773 56677777888887
Q ss_pred EE
Q 043816 344 AA 345 (378)
Q Consensus 344 ~~ 345 (378)
+-
T Consensus 217 lL 218 (307)
T KOG0316|consen 217 LL 218 (307)
T ss_pred HH
Confidence 76
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.95 E-value=1.1e+02 Score=28.03 Aligned_cols=112 Identities=17% Similarity=0.069 Sum_probs=59.4
Q ss_pred CceEECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeE---EEEEecCCCCcEEEE
Q 043816 204 DGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCL---YFSCFCDYPEPVDIW 279 (378)
Q Consensus 204 ~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L---~l~~~~~~~~~i~iW 279 (378)
.+|.++|-.-.-+..++ .|-.||+.+..= ..+-.|.+ .+......+.+ .|+...++. .|.||
T Consensus 47 tavAVs~~~~aSGssDe------tI~IYDm~k~~qlg~ll~Hag-------sitaL~F~~~~S~shLlS~sdDG-~i~iw 112 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSDE------TIHIYDMRKRKQLGILLSHAG-------SITALKFYPPLSKSHLLSGSDDG-HIIIW 112 (362)
T ss_pred eEEEecceeEeccCCCC------cEEEEeccchhhhcceecccc-------ceEEEEecCCcchhheeeecCCC-cEEEE
Confidence 37788876333333332 399999976543 33333322 23322223333 555555444 89999
Q ss_pred EEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 280 IMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 280 ~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
..+ +|..+..+... -....-+++++.|.+-+-. ..+..+-.||+-+++--
T Consensus 113 ~~~-~W~~~~slK~H----~~~Vt~lsiHPS~KLALsV-----------g~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 113 RVG-SWELLKSLKAH----KGQVTDLSIHPSGKLALSV-----------GGDQVLRTWNLVRGRVA 162 (362)
T ss_pred EcC-CeEEeeeeccc----ccccceeEecCCCceEEEE-----------cCCceeeeehhhcCccc
Confidence 875 57777777651 0012336666666555544 34555555555555444
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=64.93 E-value=57 Score=29.64 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=46.7
Q ss_pred CeEEEEEecCCCCcEEEEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
+.|..++..+. ++.+|.++. .-.-+....+ ....+ -++..++|.+|+.. ..++.+-.||+
T Consensus 40 ~~~~~A~SWD~--tVR~wevq~~g~~~~ka~~~~----~~PvL-~v~WsddgskVf~g-----------~~Dk~~k~wDL 101 (347)
T KOG0647|consen 40 DNLLAAGSWDG--TVRIWEVQNSGQLVPKAQQSH----DGPVL-DVCWSDDGSKVFSG-----------GCDKQAKLWDL 101 (347)
T ss_pred CceEEecccCC--ceEEEEEecCCcccchhhhcc----CCCeE-EEEEccCCceEEee-----------ccCCceEEEEc
Confidence 44444555555 999999987 1111111111 00111 13445688899999 57899999999
Q ss_pred CCCeEEEEEEEecc
Q 043816 340 QNQRAAGQVTVHGV 353 (378)
Q Consensus 340 ~t~~~~~~v~~~~~ 353 (378)
.+++.. +|..+..
T Consensus 102 ~S~Q~~-~v~~Hd~ 114 (347)
T KOG0647|consen 102 ASGQVS-QVAAHDA 114 (347)
T ss_pred cCCCee-eeeeccc
Confidence 999999 8886543
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=62.20 E-value=1.4e+02 Score=27.87 Aligned_cols=174 Identities=14% Similarity=0.225 Sum_probs=90.8
Q ss_pred CceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc--eEEee-ccCCccccCCCCceEE-CCeeEEEEEeCC
Q 043816 145 ADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS--SRRIR-VDFPYYFSHPRDGTFA-RGHVHWLVLNEP 220 (378)
Q Consensus 145 ~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~--W~~~~-~~~p~~~~~~~~~v~~-~G~lYwl~~~~~ 220 (378)
....+...++|+++. -.|.-. ....+.+|+...+. ..... ..+|. ...+++.++. +|..-++.....
T Consensus 143 ~~h~H~v~~~pdg~~-v~v~dl-------G~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s 213 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRF-VYVPDL-------GADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELS 213 (345)
T ss_dssp STCEEEEEE-TTSSE-EEEEET-------TTTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTT
T ss_pred cccceeEEECCCCCE-EEEEec-------CCCEEEEEEEeCCCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCC
Confidence 455666777876543 332211 24578888887654 54433 11121 1111222222 565444443332
Q ss_pred CCCCCCEEEEEECC--CceEeee----cCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcC---ceeeeEE
Q 043816 221 EGYNGDLIVAFDLK--SEEFFEV----PLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKE---SWTKVFS 290 (378)
Q Consensus 221 ~~~~~~~il~fD~~--~~~~~~i----~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~ 290 (378)
..|.+|+.. +..++.+ .+|........ -..+... +|+..++.... .+.|.++.++. .-..+..
T Consensus 214 -----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 214 -----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA-PAEIAISPDGRFLYVSNRG-SNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp -----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSS-EEEEEE-TTSSEEEEEECT-TTEEEEEEECTTTTTEEEEEE
T ss_pred -----CcEEEEeecccCCceeEEEEeeeccccccccCC-ceeEEEecCCCEEEEEecc-CCEEEEEEEecCCCceEEEEE
Confidence 247777766 6666554 35543322112 3445444 57655554443 23999999954 4444455
Q ss_pred EecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEE--ECCCCeEEEEEE
Q 043816 291 FAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWY--DLQNQRAAGQVT 349 (378)
Q Consensus 291 i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~y--d~~t~~~~~~v~ 349 (378)
++.. ....+-+.+.++|+.|++.. ..+..+.+| |.+++.++ .+.
T Consensus 287 ~~~~----G~~Pr~~~~s~~g~~l~Va~----------~~s~~v~vf~~d~~tG~l~-~~~ 332 (345)
T PF10282_consen 287 VPTG----GKFPRHFAFSPDGRYLYVAN----------QDSNTVSVFDIDPDTGKLT-PVG 332 (345)
T ss_dssp EEES----SSSEEEEEE-TTSSEEEEEE----------TTTTEEEEEEEETTTTEEE-EEE
T ss_pred EeCC----CCCccEEEEeCCCCEEEEEe----------cCCCeEEEEEEeCCCCcEE-Eec
Confidence 5541 11234577788999888884 355666666 67899999 765
No 87
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=61.69 E-value=1.2e+02 Score=27.18 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=52.3
Q ss_pred CeEEEEEecCCCCcEEEEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
|.+...++.+. .+.||.+.+ +|+.+..++-. .-+..+-++..+.|..|... ..+..+..|--
T Consensus 27 g~ilAscg~Dk--~vriw~~~~~~s~~ck~vld~~---hkrsVRsvAwsp~g~~La~a-----------SFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDK--AVRIWSTSSGDSWTCKTVLDDG---HKRSVRSVAWSPHGRYLASA-----------SFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCc--eEEEEecCCCCcEEEEEecccc---chheeeeeeecCCCcEEEEe-----------eccceEEEeec
Confidence 34444444444 999999996 99999888751 12344556766777766666 35677888888
Q ss_pred CCCeEEEEEE-EeccCC
Q 043816 340 QNQRAAGQVT-VHGVPQ 355 (378)
Q Consensus 340 ~t~~~~~~v~-~~~~~~ 355 (378)
..+.++ .+. ++|.+.
T Consensus 91 ~~~efe-cv~~lEGHEn 106 (312)
T KOG0645|consen 91 EDGEFE-CVATLEGHEN 106 (312)
T ss_pred CCCcee-EEeeeecccc
Confidence 888888 766 555554
No 88
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=61.08 E-value=1.7e+02 Score=28.69 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=41.3
Q ss_pred CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEec
Q 043816 274 EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 274 ~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~ 352 (378)
..+.+|.-.. +|+++..=+ ..-.++++.| .|.+. ...++.++.|.+++.+- .+...+
T Consensus 390 k~v~lW~~~k~~wt~~~~d~---------~~~~~fhpsg-~va~G-----------t~~G~w~V~d~e~~~lv-~~~~d~ 447 (626)
T KOG2106|consen 390 KHVRLWNDHKLEWTKIIEDP---------AECADFHPSG-VVAVG-----------TATGRWFVLDTETQDLV-TIHTDN 447 (626)
T ss_pred ceEEEccCCceeEEEEecCc---------eeEeeccCcc-eEEEe-----------eccceEEEEecccceeE-EEEecC
Confidence 3688888222 788765222 2235566666 66666 46788888888888877 666552
Q ss_pred cCCCceeEEEEEec
Q 043816 353 VPQGCRYTMIYVDS 366 (378)
Q Consensus 353 ~~~~~~~~~~y~~s 366 (378)
.+ ..++.|.++
T Consensus 448 ~~---ls~v~ysp~ 458 (626)
T KOG2106|consen 448 EQ---LSVVRYSPD 458 (626)
T ss_pred Cc---eEEEEEcCC
Confidence 22 445555443
No 89
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.78 E-value=1.5e+02 Score=27.95 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=27.0
Q ss_pred EEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEec
Q 043816 304 ALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 304 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~ 352 (378)
-+.+++++.++..+ .-+..|-+||.+|+++.+++.++.
T Consensus 295 sih~hp~~~~las~-----------GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 295 SIHCHPTHPVLASC-----------GLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred eEEEcCCCceEEee-----------ccceeEEEeecccchhhhhhhhhc
Confidence 35556665566666 578899999999977775766654
No 90
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.34 E-value=30 Score=32.74 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=53.2
Q ss_pred eeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccc-eeeEEEEEee--cCCEEEEeeccCCCcccccc
Q 043816 254 LMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIF-TYAKALAYSK--SGDKVLVDKFLYDEDEDEGI 329 (378)
Q Consensus 254 ~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~-~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~ 329 (378)
...+... +|++.++....+ ++.+|.+++ |..+.+. +|.- ..+.+..+.+ +...|+-. .
T Consensus 398 its~~iS~d~k~~LvnL~~q--ei~LWDl~e-~~lv~kY----~Ghkq~~fiIrSCFgg~~~~fiaSG-----------S 459 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQ--EIHLWDLEE-NKLVRKY----FGHKQGHFIIRSCFGGGNDKFIASG-----------S 459 (519)
T ss_pred eeEEEEcCCCcEEEEEcccC--eeEEeecch-hhHHHHh----hcccccceEEEeccCCCCcceEEec-----------C
Confidence 3444444 689999998888 999999986 3332211 1111 1222223333 33334444 4
Q ss_pred CCcEEEEEECCCCeEEEEEEEeccCCCceeEEEEEec
Q 043816 330 NKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDS 366 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~s 366 (378)
.+.+++.||.++++.- .+ +.|+..+ -.+..|.|.
T Consensus 460 ED~kvyIWhr~sgkll-~~-LsGHs~~-vNcVswNP~ 493 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLL-AV-LSGHSKT-VNCVSWNPA 493 (519)
T ss_pred CCceEEEEEccCCcee-Ee-ecCCcce-eeEEecCCC
Confidence 7889999999999887 43 5554443 445555544
No 91
>PRK00178 tolB translocation protein TolB; Provisional
Probab=60.13 E-value=1.6e+02 Score=28.17 Aligned_cols=189 Identities=11% Similarity=-0.007 Sum_probs=95.3
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
...+++.|..|++...|...+.. .....+.|+++ +-++.... .....+.+++..++..+.+. ..+.
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~-------~~~~~~SpDG~-~la~~~~~-----~g~~~Iy~~d~~~~~~~~lt-~~~~ 287 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL-------NGAPAWSPDGS-KLAFVLSK-----DGNPEIYVMDLASRQLSRVT-NHPA 287 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC-------cCCeEECCCCC-EEEEEEcc-----CCCceEEEEECCCCCeEEcc-cCCC
Confidence 34799999999998887654321 11244555433 23322221 12356788899888877765 2111
Q ss_pred cccCCCCceEECC-eeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcE
Q 043816 198 YFSHPRDGTFARG-HVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPV 276 (378)
Q Consensus 198 ~~~~~~~~v~~~G-~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i 276 (378)
........-+| .+++..... ....|..+|+.+.....+....... . ...+..-+..|++...... ..
T Consensus 288 --~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~~~~---~-~~~~Spdg~~i~~~~~~~~--~~ 355 (430)
T PRK00178 288 --IDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVGNYN---A-RPRLSADGKTLVMVHRQDG--NF 355 (430)
T ss_pred --CcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCCCCc---c-ceEECCCCCEEEEEEccCC--ce
Confidence 01111222255 456654332 1235888898877776654321111 1 2222222334555443333 44
Q ss_pred EEEEEc--C-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 277 DIWIMK--E-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 277 ~iW~l~--~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
.||.++ . ....+ .... ....| .+.++|..|++.... .....++..+.+.+.-+ .+.
T Consensus 356 ~l~~~dl~tg~~~~l---t~~~----~~~~p-~~spdg~~i~~~~~~--------~g~~~l~~~~~~g~~~~-~l~ 414 (430)
T PRK00178 356 HVAAQDLQRGSVRIL---TDTS----LDESP-SVAPNGTMLIYATRQ--------QGRGVLMLVSINGRVRL-PLP 414 (430)
T ss_pred EEEEEECCCCCEEEc---cCCC----CCCCc-eECCCCCEEEEEEec--------CCceEEEEEECCCCceE-ECc
Confidence 455554 3 33222 1110 01122 456788888777410 13356888899877666 544
No 92
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=59.72 E-value=27 Score=26.65 Aligned_cols=43 Identities=14% Similarity=0.012 Sum_probs=30.0
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEE
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLI 166 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~ 166 (378)
..+.+.||.||.|..+ .+... ......+.+++..+.|+|++..
T Consensus 9 A~Vm~~d~~tk~W~P~--~~~~~---~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPA--GGGSQ---GFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcC--CCCCC---CcceEEEEEcCCCCEEEEEEee
Confidence 3588899999986544 33111 3456667778888899999865
No 93
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=58.33 E-value=2.3e+02 Score=29.33 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=74.2
Q ss_pred ceEEC--CeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEE-EEeCCeEEEEEecCCCCcEEEEE
Q 043816 205 GTFAR--GHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYM-GNFSGCLYFSCFCDYPEPVDIWI 280 (378)
Q Consensus 205 ~v~~~--G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l-~~~~G~L~l~~~~~~~~~i~iW~ 280 (378)
+|.++ |-+-..+..+ .+.|.+-++.+++--.+ ..-.+.. ..| ....|.+......+. ++.+|.
T Consensus 440 cvavD~sGelV~AG~~d-----~F~IfvWS~qTGqllDiLsGHEgPV------s~l~f~~~~~~LaS~SWDk--TVRiW~ 506 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQD-----SFEIFVWSVQTGQLLDILSGHEGPV------SGLSFSPDGSLLASGSWDK--TVRIWD 506 (893)
T ss_pred EEEEcCCCCEEEeeccc-----eEEEEEEEeecCeeeehhcCCCCcc------eeeEEccccCeEEeccccc--eEEEEE
Confidence 56666 7777766554 24588888888877554 2222211 122 233566555555556 999999
Q ss_pred EcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 281 MKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 281 l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
.-++|..+..+.. ......+.+.++|+.|.+. .-++.+-+||.+.+.-.
T Consensus 507 if~s~~~vEtl~i-----~sdvl~vsfrPdG~elaVa-----------TldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 507 IFSSSGTVETLEI-----RSDVLAVSFRPDGKELAVA-----------TLDGQITFFDIKEAVQV 555 (893)
T ss_pred eeccCceeeeEee-----ccceeEEEEcCCCCeEEEE-----------EecceEEEEEhhhceee
Confidence 9888888888887 2233446777888888888 46788999988876655
No 94
>PLN00181 protein SPA1-RELATED; Provisional
Probab=58.33 E-value=2.5e+02 Score=29.67 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=93.3
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc-eE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS-SR 189 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~-W~ 189 (378)
.|.....+..+.|||..+++....-... ...+..+.+++..+.+-+.+- ....+.+|+..++. ..
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H------~~~V~~l~~~p~~~~~L~Sgs--------~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKEH------EKRVWSIDYSSADPTLLASGS--------DDGSVKLWSINQGVSIG 612 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecCC------CCCEEEEEEcCCCCCEEEEEc--------CCCEEEEEECCCCcEEE
Confidence 4443444668899998877654321111 334566677665444322221 24567888877642 22
Q ss_pred EeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCce--EeeecCCCCCCCCCCCeeEEEEeCCeE
Q 043816 190 RIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEE--FFEVPLPHLENRDSGNLMYMGNFSGCL 264 (378)
Q Consensus 190 ~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~l~~~~G~L 264 (378)
.+. . . ..-.++.+ +|.....+..+ ..|..+|+.+.. ...+.. . ...-..+...++..
T Consensus 613 ~~~-~-~----~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~----h--~~~V~~v~f~~~~~ 674 (793)
T PLN00181 613 TIK-T-K----ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG----H--SKTVSYVRFVDSST 674 (793)
T ss_pred EEe-c-C----CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC----C--CCCEEEEEEeCCCE
Confidence 222 0 0 00012222 34443333322 358889987543 122211 0 11022233346666
Q ss_pred EEEEecCCCCcEEEEEEcC-----ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 265 YFSCFCDYPEPVDIWIMKE-----SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 265 ~l~~~~~~~~~i~iW~l~~-----~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.+....+. .+.||.+.. .|..+..+... ......+++..+|..|... ..++.+..|+.
T Consensus 675 lvs~s~D~--~ikiWd~~~~~~~~~~~~l~~~~gh----~~~i~~v~~s~~~~~lasg-----------s~D~~v~iw~~ 737 (793)
T PLN00181 675 LVSSSTDN--TLKLWDLSMSISGINETPLHSFMGH----TNVKNFVGLSVSDGYIATG-----------SETNEVFVYHK 737 (793)
T ss_pred EEEEECCC--EEEEEeCCCCccccCCcceEEEcCC----CCCeeEEEEcCCCCEEEEE-----------eCCCEEEEEEC
Confidence 55555555 899999864 46555555431 1112235566677766666 46788888887
Q ss_pred CCC
Q 043816 340 QNQ 342 (378)
Q Consensus 340 ~t~ 342 (378)
.+.
T Consensus 738 ~~~ 740 (793)
T PLN00181 738 AFP 740 (793)
T ss_pred CCC
Confidence 655
No 95
>PF13013 F-box-like_2: F-box-like domain
Probab=55.68 E-value=3.7 Score=31.28 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHhcCChhchheeeeccc
Q 043816 2 ERLPRDLNMNILSRLSVKCLLRLRCVSK 29 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp~~sl~r~~~VcK 29 (378)
.+||+||+..|+..-...++...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 5799999999999998887765555555
No 96
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=55.08 E-value=24 Score=34.27 Aligned_cols=119 Identities=11% Similarity=-0.023 Sum_probs=71.3
Q ss_pred EEEEcCCCcceeecCCCCCCCCC-----CCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeec--
Q 043816 121 IALWNPSTKKHVLLPKFWSDFDD-----YADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRV-- 193 (378)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~-----~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~-- 193 (378)
+..--|.|-.|..+|+....... .....+.|.+++.++--.+.+-.. +-.....+.+|+.+.+.|..+..
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd---G~~~l~DFW~Y~v~e~~W~~iN~~t 307 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD---GTQDLADFWAYSVKENQWTCINRDT 307 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc---cchhHHHHHhhcCCcceeEEeecCC
Confidence 44557888999998877643211 134555566666655433333322 12245677899999999999872
Q ss_pred cCCccccCCCC-ceEE--CCeeEEEEEeCCC-----CCCCCEEEEEECCCceEeeecCC
Q 043816 194 DFPYYFSHPRD-GTFA--RGHVHWLVLNEPE-----GYNGDLIVAFDLKSEEFFEVPLP 244 (378)
Q Consensus 194 ~~p~~~~~~~~-~v~~--~G~lYwl~~~~~~-----~~~~~~il~fD~~~~~~~~i~~P 244 (378)
..|. ...++ .|.. .-++|-|+..-+. .+.+.-+-.||..++.|..+..-
T Consensus 308 ~~PG--~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d 364 (723)
T KOG2437|consen 308 EGPG--ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED 364 (723)
T ss_pred CCCc--chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc
Confidence 1221 11222 2222 2378888755432 24456699999999999988543
No 97
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=52.46 E-value=36 Score=18.89 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=18.8
Q ss_pred CCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 311 GDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 311 g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
++.+++. ..++.++.+|.++++..
T Consensus 6 ~~~v~~~-----------~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 6 DGTVYVG-----------STDGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEE-----------cCCCEEEEEEcccCcEE
Confidence 3467777 46789999999988765
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=52.14 E-value=1.8e+02 Score=26.12 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=76.3
Q ss_pred CcccEEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCC-ceEeeecCCCCCCCCC
Q 043816 173 VEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKS-EEFFEVPLPHLENRDS 251 (378)
Q Consensus 173 ~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~-~~~~~i~~P~~~~~~~ 251 (378)
...+.+..|+..++.=.... .+|... .......+++.||-|+.... ...+||..+ +.-..++.|. +
T Consensus 65 yG~S~l~~~d~~tg~~~~~~-~l~~~~-FgEGit~~~d~l~qLTWk~~------~~f~yd~~tl~~~~~~~y~~--E--- 131 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSV-PLPPRY-FGEGITILGDKLYQLTWKEG------TGFVYDPNTLKKIGTFPYPG--E--- 131 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEE-E-TTT---EEEEEEETTEEEEEESSSS------EEEEEETTTTEEEEEEE-SS--S---
T ss_pred CCcEEEEEEECCCCcEEEEE-ECCccc-cceeEEEECCEEEEEEecCC------eEEEEccccceEEEEEecCC--c---
Confidence 35778889999998644333 444432 12235677999999998753 589999975 2334445552 1
Q ss_pred CCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCcc-ccceeeEEEEEeecCCEEEEeeccCCCcccccc
Q 043816 252 GNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVF-GIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGI 329 (378)
Q Consensus 252 ~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~-~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~ 329 (378)
..-|+..+..|.+..+ +=.|+.++- ....+.+|.+... .......-+-+. +| .|+-.. -
T Consensus 132 --GWGLt~dg~~Li~SDG-----S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~IyANV----------W 192 (264)
T PF05096_consen 132 --GWGLTSDGKRLIMSDG-----SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIYANV----------W 192 (264)
T ss_dssp ----EEEECSSCEEEE-S-----SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEEEEE----------T
T ss_pred --ceEEEcCCCEEEEECC-----ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEEEEe----------C
Confidence 2334433344444433 223445544 4556666665111 111111112221 44 455553 3
Q ss_pred CCcEEEEEECCCCeEEEEEEE
Q 043816 330 NKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~~~~v~~ 350 (378)
....++..|++|+++.+.+.+
T Consensus 193 ~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-
T ss_pred CCCeEEEEeCCCCeEEEEEEh
Confidence 568999999999999955544
No 99
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=51.73 E-value=1.7e+02 Score=29.23 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=54.0
Q ss_pred EEEEECCCceEe-eecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC-ceeee--EEEecCcc-cc--ce
Q 043816 228 IVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE-SWTKV--FSFAGGVF-GI--FT 300 (378)
Q Consensus 228 il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~--~~i~~~~~-~~--~~ 300 (378)
|..||++.+.|- .+..-.... +.+.+..++|-| .++..+. .++.|-..+ +=... +...++.. +. ..
T Consensus 157 vYRlNLEqGrfL~P~~~~~~~l----N~v~in~~hgLl-a~Gt~~g--~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~ 229 (703)
T KOG2321|consen 157 VYRLNLEQGRFLNPFETDSGEL----NVVSINEEHGLL-ACGTEDG--VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAP 229 (703)
T ss_pred eEEEEccccccccccccccccc----eeeeecCccceE-EecccCc--eEEEecchhhhhheeeecccccCCCccccccC
Confidence 999999998883 222211111 134444445533 3333344 899998876 21111 11121111 11 12
Q ss_pred eeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 301 YAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 301 ~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
....+.+..+|=-+-+. ...+.++.||+++.+=- .++
T Consensus 230 svTal~F~d~gL~~aVG-----------ts~G~v~iyDLRa~~pl-~~k 266 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVG-----------TSTGSVLIYDLRASKPL-LVK 266 (703)
T ss_pred cceEEEecCCceeEEee-----------ccCCcEEEEEcccCCce-eec
Confidence 23344554445444444 57889999999988755 444
No 100
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=50.77 E-value=2.2e+02 Score=26.90 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=92.0
Q ss_pred ccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC-
Q 043816 108 CNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN- 186 (378)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~- 186 (378)
.+|.|.+......++..|+.||+.+.--+.+.... ....+ .+. +|+... ....+..++..++
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--ssP~v-------~~~-~v~v~~-------~~g~l~ald~~tG~ 181 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL--SRPVV-------SDG-LVLVHT-------SNGMLQALNESDGA 181 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCcee--cCCEE-------ECC-EEEEEC-------CCCEEEEEEccCCC
Confidence 36677666556678889999988665322221100 00000 012 233221 1346778888777
Q ss_pred -ceEEeeccCCc-cccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCc--eEee-ecCCCCCCCC---CCCeeEEE
Q 043816 187 -SSRRIRVDFPY-YFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSE--EFFE-VPLPHLENRD---SGNLMYMG 258 (378)
Q Consensus 187 -~W~~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~--~~~~-i~~P~~~~~~---~~~~~~l~ 258 (378)
.|+... ..|. .......++..+|.+|+-...+ .+.++|..+. .|+. +..|...... ......-+
T Consensus 182 ~~W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 VKWTVNL-DVPSLTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred EeeeecC-CCCcccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 488754 3221 1112234677788888754432 4899998764 4653 2333221110 00011223
Q ss_pred EeCCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEE
Q 043816 259 NFSGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELD 335 (378)
Q Consensus 259 ~~~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~ 335 (378)
..+|.|++.... . .+.....+. .|.... .. . ..+ . ..++.|++. ..++.++
T Consensus 254 v~~~~vy~~~~~-g--~l~ald~~tG~~~W~~~~--~~-----~--~~~-~--~~~~~vy~~-----------~~~g~l~ 307 (394)
T PRK11138 254 VVGGVVYALAYN-G--NLVALDLRSGQIVWKREY--GS-----V--NDF-A--VDGGRIYLV-----------DQNDRVY 307 (394)
T ss_pred EECCEEEEEEcC-C--eEEEEECCCCCEEEeecC--CC-----c--cCc-E--EECCEEEEE-----------cCCCeEE
Confidence 456677665432 1 333223322 465421 11 0 011 1 235567766 3567888
Q ss_pred EEECCCCeE
Q 043816 336 WYDLQNQRA 344 (378)
Q Consensus 336 ~yd~~t~~~ 344 (378)
.+|.++++.
T Consensus 308 ald~~tG~~ 316 (394)
T PRK11138 308 ALDTRGGVE 316 (394)
T ss_pred EEECCCCcE
Confidence 888887653
No 101
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=50.48 E-value=2e+02 Score=26.27 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCeeEEEEEeCCCCCCCCEEEEEECCC-ceEee-----ecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEc
Q 043816 209 RGHVHWLVLNEPEGYNGDLIVAFDLKS-EEFFE-----VPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMK 282 (378)
Q Consensus 209 ~G~lYwl~~~~~~~~~~~~il~fD~~~-~~~~~-----i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~ 282 (378)
+|..-+...... ..|.+||+.+ ..... +..|.... .. .+.+ .-+|+..++.... ...+.+|.++
T Consensus 136 ~g~~l~v~~~~~-----~~v~v~d~~~~g~l~~~~~~~~~~~~g~~--p~-~~~~-~pdg~~lyv~~~~-~~~v~v~~~~ 205 (330)
T PRK11028 136 DNRTLWVPCLKE-----DRIRLFTLSDDGHLVAQEPAEVTTVEGAG--PR-HMVF-HPNQQYAYCVNEL-NSSVDVWQLK 205 (330)
T ss_pred CCCEEEEeeCCC-----CEEEEEEECCCCcccccCCCceecCCCCC--Cc-eEEE-CCCCCEEEEEecC-CCEEEEEEEe
Confidence 465444444332 3588999865 33321 23333322 11 2222 2355544444332 2399999997
Q ss_pred C---ceeeeEEEec--CccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 283 E---SWTKVFSFAG--GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 283 ~---~W~~~~~i~~--~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
. ....+..+.. ..........-+.++++|+.++... ...+.+.+|+.++
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~----------~~~~~I~v~~i~~ 259 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD----------RTASLISVFSVSE 259 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec----------CCCCeEEEEEEeC
Confidence 4 4555555543 1111111112356678888888873 2456787787743
No 102
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=49.96 E-value=2.2e+02 Score=26.62 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=57.0
Q ss_pred CceEECCeeEEEEEeCCCCCCCCEEEEEECCCc--eEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEE
Q 043816 204 DGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSE--EFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIM 281 (378)
Q Consensus 204 ~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l 281 (378)
.++..+|.+|.....+ .+.++|.++. .|.. +.+. ....+..+|.+++... +. .+..+..
T Consensus 236 ~p~~~~~~vy~~~~~g-------~l~a~d~~tG~~~W~~-~~~~--------~~~p~~~~~~vyv~~~-~G--~l~~~d~ 296 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQG-------RVAALDLRSGRVLWKR-DASS--------YQGPAVDDNRLYVTDA-DG--VVVALDR 296 (377)
T ss_pred ccEEECCEEEEEEcCC-------EEEEEECCCCcEEEee-ccCC--------ccCceEeCCEEEEECC-CC--eEEEEEC
Confidence 3567789999866443 4999999654 4543 2111 1122334555555431 11 3444444
Q ss_pred cC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEE
Q 043816 282 KE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 282 ~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
+. .|.... +.. .....|.. .|+.|++. ..++.++.+|.++++...++.+
T Consensus 297 ~tG~~~W~~~~-~~~-----~~~ssp~i---~g~~l~~~-----------~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 297 RSGSELWKNDE-LKY-----RQLTAPAV---VGGYLVVG-----------DFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred CCCcEEEcccc-ccC-----CccccCEE---ECCEEEEE-----------eCCCEEEEEECCCCCEEEEEEc
Confidence 33 454321 111 01112222 34677777 3678899999998877734444
No 103
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=49.32 E-value=2.4e+02 Score=26.72 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=56.1
Q ss_pred EEEEEECCCce-EeeecCCCCCCCCCCCeeEEE-EeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEE
Q 043816 227 LIVAFDLKSEE-FFEVPLPHLENRDSGNLMYMG-NFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKA 304 (378)
Q Consensus 227 ~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 304 (378)
.|.++|.++.+ -..|+..... ...+. ..+|+..++...+. .+.++-+.. ...+.+|.. .....-
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~------h~~~~~s~Dgr~~yv~~rdg--~vsviD~~~-~~~v~~i~~-----G~~~~~ 82 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAP------HAGLKFSPDGRYLYVANRDG--TVSVIDLAT-GKVVATIKV-----GGNPRG 82 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTE------EEEEE-TT-SSEEEEEETTS--EEEEEETTS-SSEEEEEE------SSEEEE
T ss_pred EEEEEECCCCeEEEEEcCCCCc------eeEEEecCCCCEEEEEcCCC--eEEEEECCc-ccEEEEEec-----CCCcce
Confidence 48889988754 4556543221 22232 23566555544433 777777765 235566766 112334
Q ss_pred EEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 305 LAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 305 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
+++..+|..++..+ ...+.+..+|.+|.+..+.|.
T Consensus 83 i~~s~DG~~~~v~n----------~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 83 IAVSPDGKYVYVAN----------YEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEE--TTTEEEEEE----------EETTEEEEEETTT--EEEEEE
T ss_pred EEEcCCCCEEEEEe----------cCCCceeEeccccccceeecc
Confidence 77778999888885 367899999999987773443
No 104
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=49.14 E-value=45 Score=19.60 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=14.9
Q ss_pred cCCcEEEEEECCCCeEE
Q 043816 329 INKWELDWYDLQNQRAA 345 (378)
Q Consensus 329 ~~~~~l~~yd~~t~~~~ 345 (378)
..++.++.+|.+|++..
T Consensus 7 ~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TTTSEEEEEETTTTSEE
T ss_pred CCCCEEEEEECCCCCEE
Confidence 47889999999999877
No 105
>PRK04792 tolB translocation protein TolB; Provisional
Probab=48.67 E-value=2.6e+02 Score=27.12 Aligned_cols=188 Identities=11% Similarity=0.026 Sum_probs=95.3
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
...+++.|..|++...+...+.. .....+.|+++. -++... . .....+.+++..++..+.+. ....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-------~~~~~wSPDG~~-La~~~~--~---~g~~~Iy~~dl~tg~~~~lt-~~~~ 306 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-------NGAPRFSPDGKK-LALVLS--K---DGQPEIYVVDIATKALTRIT-RHRA 306 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-------cCCeeECCCCCE-EEEEEe--C---CCCeEEEEEECCCCCeEECc-cCCC
Confidence 34799999999988777544321 113455565442 222221 1 12456777888888877765 2111
Q ss_pred cccCCCCceEECCe-eEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCC-eEEEEEecCCCCc
Q 043816 198 YFSHPRDGTFARGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSG-CLYFSCFCDYPEP 275 (378)
Q Consensus 198 ~~~~~~~~v~~~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G-~L~l~~~~~~~~~ 275 (378)
........-+|. +++..... ....|..+|+.+.+...+....... . .... .-+| .|+++..... .
T Consensus 307 --~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~~g~~~---~-~~~~-SpDG~~l~~~~~~~g--~ 373 (448)
T PRK04792 307 --IDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTFEGEQN---L-GGSI-TPDGRSMIMVNRTNG--K 373 (448)
T ss_pred --CccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEEecCCCCC---c-CeeE-CCCCCEEEEEEecCC--c
Confidence 001112223553 45443322 2246899999888777664221111 0 1112 2245 4444443333 6
Q ss_pred EEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 276 VDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 276 i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
..||.++- .... +.... ....| .+.++|..|++.... .....++.+|.+.+..+ .+.
T Consensus 374 ~~I~~~dl~~g~~~~---lt~~~----~d~~p-s~spdG~~I~~~~~~--------~g~~~l~~~~~~G~~~~-~l~ 433 (448)
T PRK04792 374 FNIARQDLETGAMQV---LTSTR----LDESP-SVAPNGTMVIYSTTY--------QGKQVLAAVSIDGRFKA-RLP 433 (448)
T ss_pred eEEEEEECCCCCeEE---ccCCC----CCCCc-eECCCCCEEEEEEec--------CCceEEEEEECCCCceE-ECc
Confidence 67777753 2222 11110 01122 456788888776310 12345888898766666 553
No 106
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=48.56 E-value=2.1e+02 Score=25.94 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=108.1
Q ss_pred ecccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEe----------------eeCCCCCEEEEEEEEe
Q 043816 106 DTCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFG----------------YDAVSDDYKVVRLIQF 168 (378)
Q Consensus 106 ~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg----------------~d~~~~~ykVv~~~~~ 168 (378)
-+-+|-|-+.. ....+-=.||.||+....|-....++ ..+.+| +|+.+.+++-+-+-
T Consensus 69 papdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~P----hgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp-- 142 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASP----HGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP-- 142 (353)
T ss_pred cCCCCceEEecCccccceecCCCCCceEEEecCCCCCC----ceEEECCCCCeeEecCcceeEEecCcccceEEeecc--
Confidence 34467665555 34456667999999999886654432 122222 23323222222221
Q ss_pred cCCCCcccEEEEEEcCCCceEEeeccC-----Ccc-----cc----CCCCc--eEECCeeEEEEEeCCCCCCCCEEEEEE
Q 043816 169 GRGKVEYTEIAVYSLKSNSSRRIRVDF-----PYY-----FS----HPRDG--TFARGHVHWLVLNEPEGYNGDLIVAFD 232 (378)
Q Consensus 169 ~~~~~~~~~~~vyss~t~~W~~~~~~~-----p~~-----~~----~~~~~--v~~~G~lYwl~~~~~~~~~~~~il~fD 232 (378)
.......++.-||+...+-|-+..... |.. +. ..-.+ +.-||.+|+-...++ .|...|
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn------aiarid 216 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN------AIARID 216 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc------ceEEcc
Confidence 111225678889999999997654211 100 00 11124 455799988765443 599999
Q ss_pred CCCceEeeecCCCCCCCCCCCeeEE-EEeCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeec
Q 043816 233 LKSEEFFEVPLPHLENRDSGNLMYM-GNFSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKS 310 (378)
Q Consensus 233 ~~~~~~~~i~~P~~~~~~~~~~~~l-~~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~ 310 (378)
+.+..-..++.|..... + ..++ ....|++-....-.. .+.-..-.. +|.. +.++-. ......+.+...
T Consensus 217 p~~~~aev~p~P~~~~~--g-sRriwsdpig~~wittwg~g--~l~rfdPs~~sW~e-ypLPgs----~arpys~rVD~~ 286 (353)
T COG4257 217 PFAGHAEVVPQPNALKA--G-SRRIWSDPIGRAWITTWGTG--SLHRFDPSVTSWIE-YPLPGS----KARPYSMRVDRH 286 (353)
T ss_pred cccCCcceecCCCcccc--c-ccccccCccCcEEEeccCCc--eeeEeCccccccee-eeCCCC----CCCcceeeeccC
Confidence 99987788888877432 1 2222 111233322211110 111111111 4432 223320 001112444434
Q ss_pred CCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEE
Q 043816 311 GDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 311 g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
++|.+.. ...+.+..||++|.+++ .+-+
T Consensus 287 -grVW~se----------a~agai~rfdpeta~ft-v~p~ 314 (353)
T COG4257 287 -GRVWLSE----------ADAGAIGRFDPETARFT-VLPI 314 (353)
T ss_pred -CcEEeec----------cccCceeecCcccceEE-EecC
Confidence 4566642 46788999999999998 6554
No 107
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=46.80 E-value=11 Score=34.65 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHhcCC--------hhchheeeeccccchhhccC
Q 043816 2 ERLPRDLNMNILSRLS--------VKCLLRLRCVSKPFCSLIDS 37 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp--------~~sl~r~~~VcK~W~~~i~~ 37 (378)
+.||.++|.+|+.|.. -++++.+..||+.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 3799999999999985 33688999999999997543
No 108
>PRK05137 tolB translocation protein TolB; Provisional
Probab=46.26 E-value=2.8e+02 Score=26.71 Aligned_cols=193 Identities=13% Similarity=0.120 Sum_probs=93.3
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
...++++|+.|++.+.+...+. ......+.|+++. -++... . .....+.+++..++.-+.+. ..+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g-------~~~~~~~SPDG~~-la~~~~--~---~g~~~Iy~~d~~~~~~~~Lt-~~~~ 290 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPG-------MTFAPRFSPDGRK-VVMSLS--Q---GGNTDIYTMDLRSGTTTRLT-DSPA 290 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCC-------cccCcEECCCCCE-EEEEEe--c---CCCceEEEEECCCCceEEcc-CCCC
Confidence 4589999999999887754332 1123345554432 222222 1 12356677788887766655 2111
Q ss_pred cccCCCCceEECCe-eEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCC-eEEEEEecCCCCc
Q 043816 198 YFSHPRDGTFARGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSG-CLYFSCFCDYPEP 275 (378)
Q Consensus 198 ~~~~~~~~v~~~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G-~L~l~~~~~~~~~ 275 (378)
........-+|. +++..... ....|..+|+.+...+.+....... . ..... -+| .|+++........
T Consensus 291 --~~~~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~~~~~---~-~~~~S-pdG~~ia~~~~~~~~~~ 359 (435)
T PRK05137 291 --IDTSPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFGGGRY---S-TPVWS-PRGDLIAFTKQGGGQFS 359 (435)
T ss_pred --ccCceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecCCCcc---c-CeEEC-CCCCEEEEEEcCCCceE
Confidence 001112233453 44443221 1235888898877666653221111 1 22222 244 4555443333123
Q ss_pred EEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccC-CcEEEEEECCCCeEEEEEE
Q 043816 276 VDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN-KWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 276 i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~-~~~l~~yd~~t~~~~~~v~ 349 (378)
+.+|.++...... +... .. .....+.++|+.|++.... . +.. ...|+.+|++++..+ .+.
T Consensus 360 i~~~d~~~~~~~~--lt~~----~~-~~~p~~spDG~~i~~~~~~---~---~~~~~~~L~~~dl~g~~~~-~l~ 420 (435)
T PRK05137 360 IGVMKPDGSGERI--LTSG----FL-VEGPTWAPNGRVIMFFRQT---P---GSGGAPKLYTVDLTGRNER-EVP 420 (435)
T ss_pred EEEEECCCCceEe--ccCC----CC-CCCCeECCCCCEEEEEEcc---C---CCCCcceEEEEECCCCceE-Ecc
Confidence 4444443322221 1111 11 1123456788877776310 0 000 147999999998888 664
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=3.1e+02 Score=27.06 Aligned_cols=193 Identities=13% Similarity=0.103 Sum_probs=92.7
Q ss_pred cccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 107 TCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
++.+.|.+.- ...+|+||-.+++...|-... ...+....+.+.+ .|-.|+-. ...++|++.++.
T Consensus 186 ss~n~laVal-g~~vylW~~~s~~v~~l~~~~------~~~vtSv~ws~~G-~~LavG~~--------~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 186 SSANVLAVAL-GQSVYLWSASSGSVTELCSFG------EELVTSVKWSPDG-SHLAVGTS--------DGTVQIWDVKEQ 249 (484)
T ss_pred ccCCeEEEEe-cceEEEEecCCCceEEeEecC------CCceEEEEECCCC-CEEEEeec--------CCeEEEEehhhc
Confidence 3445555544 456999999999988876664 1344455565543 33333332 457788887654
Q ss_pred c-eEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEE
Q 043816 187 S-SRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLY 265 (378)
Q Consensus 187 ~-W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~ 265 (378)
. =+.+... ....-.++..++.+.-.+.. ...|+-+|+....-..-.+ ... ..+-+-|........
T Consensus 250 k~~~~~~~~----h~~rvg~laW~~~~lssGsr------~~~I~~~dvR~~~~~~~~~--~~H--~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 250 KKTRTLRGS----HASRVGSLAWNSSVLSSGSR------DGKILNHDVRISQHVVSTL--QGH--RQEVCGLKWSPDGNQ 315 (484)
T ss_pred cccccccCC----cCceeEEEeccCceEEEecC------CCcEEEEEEecchhhhhhh--hcc--cceeeeeEECCCCCe
Confidence 3 1111100 00000123333333222222 2248888875432211100 000 111233444444444
Q ss_pred EEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEee-cCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 266 FSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSK-SGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 266 l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~-~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
++.+..+. .+.||.... ++.+.. ..+ ...++.++.++ ..++|-.. .|..+..+-+||..+++
T Consensus 316 lASGgnDN-~~~Iwd~~~~~p~~~~-~~H-----~aAVKA~awcP~q~~lLAsG---------GGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 316 LASGGNDN-VVFIWDGLSPEPKFTF-TEH-----TAAVKALAWCPWQSGLLATG---------GGSADRCIKFWNTNTGA 379 (484)
T ss_pred eccCCCcc-ceEeccCCCccccEEE-ecc-----ceeeeEeeeCCCccCceEEc---------CCCcccEEEEEEcCCCc
Confidence 55444332 899998844 322221 111 11233344433 33444444 23567888899998887
Q ss_pred EE
Q 043816 344 AA 345 (378)
Q Consensus 344 ~~ 345 (378)
..
T Consensus 380 ~i 381 (484)
T KOG0305|consen 380 RI 381 (484)
T ss_pred Ee
Confidence 66
No 110
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=45.61 E-value=41 Score=19.93 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=16.1
Q ss_pred cCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 310 SGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 310 ~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
.++.|++. ..++.++.+|.+|
T Consensus 20 ~~g~vyv~-----------~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVG-----------TGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE------------TTSEEEEEETT-
T ss_pred ECCEEEEE-----------cCCCEEEEEeCCC
Confidence 45788888 4789999999876
No 111
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.36 E-value=1.3e+02 Score=31.05 Aligned_cols=56 Identities=16% Similarity=0.448 Sum_probs=43.7
Q ss_pred cEEEEEEcC----ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEE
Q 043816 275 PVDIWIMKE----SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 275 ~i~iW~l~~----~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
.+.||-..+ .|..+..| ...+++.++|+-.++. ...+...+|+.+..++.+...|
T Consensus 433 KvRiWsI~d~~Vv~W~Dl~~l----------ITAvcy~PdGk~avIG-----------t~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 433 KVRLWSISDKKVVDWNDLRDL----------ITAVCYSPDGKGAVIG-----------TFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ceEEeecCcCeeEeehhhhhh----------heeEEeccCCceEEEE-----------EeccEEEEEEccCCeEEEeeeE
Confidence 899998876 68777633 3457888999999999 4678999999999999864445
Q ss_pred e
Q 043816 351 H 351 (378)
Q Consensus 351 ~ 351 (378)
.
T Consensus 492 ~ 492 (712)
T KOG0283|consen 492 R 492 (712)
T ss_pred e
Confidence 3
No 112
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=43.86 E-value=2.8e+02 Score=25.96 Aligned_cols=186 Identities=14% Similarity=0.102 Sum_probs=89.3
Q ss_pred ccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC-
Q 043816 108 CNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN- 186 (378)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~- 186 (378)
.+|.+.+...+..++..|+.||+.+.--..+.... .... . .++ +|+... ....+..++..++
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~p~--v-----~~~-~v~v~~-------~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL--SPPL--V-----ANG-LVVVRT-------NDGRLTALDAATGE 166 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee--cCCE--E-----ECC-EEEEEC-------CCCeEEEEEcCCCc
Confidence 46777666556678888998888654222211100 0000 0 112 233221 1345777787776
Q ss_pred -ceEEeeccCC-ccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCc--eEee-ecCCCCCCCC---CCCeeEEE
Q 043816 187 -SSRRIRVDFP-YYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSE--EFFE-VPLPHLENRD---SGNLMYMG 258 (378)
Q Consensus 187 -~W~~~~~~~p-~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~--~~~~-i~~P~~~~~~---~~~~~~l~ 258 (378)
.|+... ..+ ........++..+|.+|.-... ..+.++|+++. .|+. +..|...... ........
T Consensus 167 ~~W~~~~-~~~~~~~~~~~sp~~~~~~v~~~~~~-------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~ 238 (377)
T TIGR03300 167 RLWTYSR-VTPALTLRGSASPVIADGGVLVGFAG-------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV 238 (377)
T ss_pred eeeEEcc-CCCceeecCCCCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE
Confidence 587654 222 1112223467778877653322 25999998764 4643 2333221100 00011223
Q ss_pred EeCCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEE
Q 043816 259 NFSGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELD 335 (378)
Q Consensus 259 ~~~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~ 335 (378)
..+|.+++... .. .+..+..+. .|.... .. ...|. + .++.|++. ..++.++
T Consensus 239 ~~~~~vy~~~~-~g--~l~a~d~~tG~~~W~~~~--~~-------~~~p~-~--~~~~vyv~-----------~~~G~l~ 292 (377)
T TIGR03300 239 VDGGQVYAVSY-QG--RVAALDLRSGRVLWKRDA--SS-------YQGPA-V--DDNRLYVT-----------DADGVVV 292 (377)
T ss_pred EECCEEEEEEc-CC--EEEEEECCCCcEEEeecc--CC-------ccCce-E--eCCEEEEE-----------CCCCeEE
Confidence 34566655443 22 455555543 465431 10 01111 2 34566666 3567788
Q ss_pred EEECCCCeE
Q 043816 336 WYDLQNQRA 344 (378)
Q Consensus 336 ~yd~~t~~~ 344 (378)
.+|.++++.
T Consensus 293 ~~d~~tG~~ 301 (377)
T TIGR03300 293 ALDRRSGSE 301 (377)
T ss_pred EEECCCCcE
Confidence 888877653
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=41.66 E-value=2.4e+02 Score=24.67 Aligned_cols=183 Identities=11% Similarity=0.077 Sum_probs=86.5
Q ss_pred CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCC
Q 043816 117 GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFP 196 (378)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 196 (378)
.+..+.++|+.|++....-.... . ..++.+++.++ + ++.... ....+.+|+..++.....- +
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~-----~--~~~l~~~~dg~-~-l~~~~~------~~~~v~~~d~~~~~~~~~~---~ 70 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQ-----R--PRGITLSKDGK-L-LYVCAS------DSDTIQVIDLATGEVIGTL---P 70 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCC-----C--CCceEECCCCC-E-EEEEEC------CCCeEEEEECCCCcEEEec---c
Confidence 35578899998887554322211 1 12355555443 2 222211 2346778888877653321 1
Q ss_pred ccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCc
Q 043816 197 YYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEP 275 (378)
Q Consensus 197 ~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~ 275 (378)
.........+.-+|...+.+.... ..|..+|+.+.+- ..++.+.... .+. ...+|++.++..... ..
T Consensus 71 ~~~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~~~~~~~~~~~~-----~~~-~~~dg~~l~~~~~~~-~~ 138 (300)
T TIGR03866 71 SGPDPELFALHPNGKILYIANEDD-----NLVTVIDIETRKVLAEIPVGVEPE-----GMA-VSPDGKIVVNTSETT-NM 138 (300)
T ss_pred CCCCccEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeEEeEeeCCCCcc-----eEE-ECCCCCEEEEEecCC-Ce
Confidence 110000001222454333332221 2488899987532 2333221111 111 223566666554432 14
Q ss_pred EEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 276 VDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 276 i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+.+|.++. ......+.... ....+.+.++|..+++.. ..++.+..||+++++..
T Consensus 139 ~~~~d~~~-~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~----------~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 139 AHFIDTKT-YEIVDNVLVDQ-----RPRFAEFTADGKELWVSS----------EIGGTVSVIDVATRKVI 192 (300)
T ss_pred EEEEeCCC-CeEEEEEEcCC-----CccEEEECCCCCEEEEEc----------CCCCEEEEEEcCcceee
Confidence 44555433 22222232211 112255667888776662 24678999999988764
No 114
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=41.37 E-value=4.4e+02 Score=27.63 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=29.5
Q ss_pred CEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC
Q 043816 226 DLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE 283 (378)
Q Consensus 226 ~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~ 283 (378)
..+++||++-|+- ..+++|..... .....-...+=.+.+.+..+ .+.||+.++
T Consensus 252 rellv~dle~~~~l~vvpier~~ak----fv~vlP~~~rd~LfclH~nG-~ltirvrk~ 305 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAK----FVDVLPDPRRDALFCLHSNG-RLTIRVRKE 305 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcc----eeEeccCCCcceEEEEecCC-eEEEEEeec
Confidence 3499999998765 55677766432 34433332222222233222 677777766
No 115
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=40.87 E-value=88 Score=24.26 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=29.7
Q ss_pred CCcEEEEEECCCCeEEEEEEEe--c-cCCCceeEEEEEeccccCCC
Q 043816 330 NKWELDWYDLQNQRAAGQVTVH--G-VPQGCRYTMIYVDSLVSLAA 372 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~~~~v~~~--~-~~~~~~~~~~y~~sl~~~~~ 372 (378)
....++.||+++.+++ .+... . .........-|..+|..+..
T Consensus 18 ~~~~IvsFDv~~E~f~-~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 62 (129)
T PF08268_consen 18 DNNVIVSFDVRSEKFR-FIKLPEDPYSSDCSSTLIEYKGKLALVSY 62 (129)
T ss_pred CCcEEEEEEcCCceEE-EEEeeeeeccccCccEEEEeCCeEEEEEe
Confidence 4678999999999999 98885 1 11112567778877766443
No 116
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.76 E-value=79 Score=18.48 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=22.2
Q ss_pred cCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEE
Q 043816 310 SGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 310 ~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
+|+.+++.+ ...+.+..+|+++++..+++..
T Consensus 2 d~~~lyv~~----------~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTN----------SGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCEEEEEe----------CCCCEEEEEECCCCeEEEEEEC
Confidence 466677763 3577899999999888745544
No 117
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=39.28 E-value=3.4e+02 Score=25.67 Aligned_cols=188 Identities=11% Similarity=0.049 Sum_probs=88.7
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
..+++++.-.+..+.|-.... ......+.|.+ ++.++... .. ....+.+++..++.-+.+. ..+..
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~-------~~~~p~~Spdg-~~la~~~~--~~---~~~~i~v~d~~~g~~~~~~-~~~~~ 235 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSRE-------PILSPAWSPDG-QKLAYVSF--ES---GKPEIYVQDLATGQREKVA-SFPGM 235 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCC-------ceecccCCCCC-CEEEEEEc--CC---CCcEEEEEECCCCCEEEee-cCCCC
Confidence 468888886655555533221 11222344433 33322211 11 2357888888888665554 22211
Q ss_pred ccCCCCceEECCe-eEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCe-EEEEEecCCCCcE
Q 043816 199 FSHPRDGTFARGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGC-LYFSCFCDYPEPV 276 (378)
Q Consensus 199 ~~~~~~~v~~~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~-L~l~~~~~~~~~i 276 (378)
. ......-+|. +++..... ....|..+|+.+.....+........ ..... .+|+ |.++..... ..
T Consensus 236 ~--~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~~~~~----~~~~s-~dg~~l~~~s~~~g--~~ 302 (417)
T TIGR02800 236 N--GAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGPGIDT----EPSWS-PDGKSIAFTSDRGG--SP 302 (417)
T ss_pred c--cceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCCCCCC----CEEEC-CCCCEEEEEECCCC--Cc
Confidence 0 1112233553 54443222 12358889998877665522111110 11111 2554 444433333 34
Q ss_pred EEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 277 DIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 277 ~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
+||.++- .+.. +... .... ....+.++|+.|++... + .....++.+|++++.++ .+.
T Consensus 303 ~iy~~d~~~~~~~~---l~~~---~~~~-~~~~~spdg~~i~~~~~----~----~~~~~i~~~d~~~~~~~-~l~ 362 (417)
T TIGR02800 303 QIYMMDADGGEVRR---LTFR---GGYN-ASPSWSPDGDLIAFVHR----E----GGGFNIAVMDLDGGGER-VLT 362 (417)
T ss_pred eEEEEECCCCCEEE---eecC---CCCc-cCeEECCCCCEEEEEEc----c----CCceEEEEEeCCCCCeE-Ecc
Confidence 5665543 3322 2221 0011 12345667887777731 0 12348999999998777 554
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=38.65 E-value=3.1e+02 Score=25.09 Aligned_cols=61 Identities=11% Similarity=-0.020 Sum_probs=34.7
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEec
Q 043816 227 LIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAG 293 (378)
Q Consensus 227 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~ 293 (378)
.+-.+|+.+++-..+-+-..... .+..+...+--||+++.-+. +|..|.+... ..+.+|.+
T Consensus 95 ~~k~wDL~S~Q~~~v~~Hd~pvk----t~~wv~~~~~~cl~TGSWDK-TlKfWD~R~~-~pv~t~~L 155 (347)
T KOG0647|consen 95 QAKLWDLASGQVSQVAAHDAPVK----TCHWVPGMNYQCLVTGSWDK-TLKFWDTRSS-NPVATLQL 155 (347)
T ss_pred ceEEEEccCCCeeeeeeccccee----EEEEecCCCcceeEeccccc-ceeecccCCC-Ceeeeeec
Confidence 37789999998877754433321 33333222333666554332 8999988751 33455555
No 119
>PRK04922 tolB translocation protein TolB; Provisional
Probab=37.98 E-value=3.8e+02 Score=25.82 Aligned_cols=190 Identities=11% Similarity=0.012 Sum_probs=94.3
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
...++++|..+++...+-..+.. .....+.|+++ .-++.... .....+.+++..++.-+.+. ....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~-------~~~~~~SpDG~-~l~~~~s~-----~g~~~Iy~~d~~~g~~~~lt-~~~~ 292 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI-------NGAPSFSPDGR-RLALTLSR-----DGNPEIYVMDLGSRQLTRLT-NHFG 292 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC-------ccCceECCCCC-EEEEEEeC-----CCCceEEEEECCCCCeEECc-cCCC
Confidence 34799999999987776543321 11234455433 22222221 12356788888888765554 1110
Q ss_pred cccCCCCceEECCe-eEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCC-eEEEEEecCCCCc
Q 043816 198 YFSHPRDGTFARGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSG-CLYFSCFCDYPEP 275 (378)
Q Consensus 198 ~~~~~~~~v~~~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G-~L~l~~~~~~~~~ 275 (378)
........-+|. +++..... ....|..+|+.+.....+...... +. ..... -+| .+++.........
T Consensus 293 --~~~~~~~spDG~~l~f~sd~~----g~~~iy~~dl~~g~~~~lt~~g~~---~~-~~~~S-pDG~~Ia~~~~~~~~~~ 361 (433)
T PRK04922 293 --IDTEPTWAPDGKSIYFTSDRG----GRPQIYRVAASGGSAERLTFQGNY---NA-RASVS-PDGKKIAMVHGSGGQYR 361 (433)
T ss_pred --CccceEECCCCCEEEEEECCC----CCceEEEEECCCCCeEEeecCCCC---cc-CEEEC-CCCCEEEEEECCCCcee
Confidence 001112233553 55544322 123588889887777665422111 11 22222 244 5555544333224
Q ss_pred EEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 276 VDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 276 i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
+.+|.++. ... .+.... .... ....++|..|++.... .....|+.++++++..+ ++.
T Consensus 362 I~v~d~~~g~~~---~Lt~~~----~~~~-p~~spdG~~i~~~s~~--------~g~~~L~~~~~~g~~~~-~l~ 419 (433)
T PRK04922 362 IAVMDLSTGSVR---TLTPGS----LDES-PSFAPNGSMVLYATRE--------GGRGVLAAVSTDGRVRQ-RLV 419 (433)
T ss_pred EEEEECCCCCeE---ECCCCC----CCCC-ceECCCCCEEEEEEec--------CCceEEEEEECCCCceE-Ecc
Confidence 55665544 332 122110 0111 2556788877776310 23457999999887766 554
No 120
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=36.44 E-value=5.4e+02 Score=27.18 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=23.2
Q ss_pred CCceEECCeeEEEEEeCCCCCCCCEEEEEECCC--ceEee
Q 043816 203 RDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKS--EEFFE 240 (378)
Q Consensus 203 ~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~--~~~~~ 240 (378)
..++.++|.+|...... .|+++|.++ +.|+.
T Consensus 188 ~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE
Confidence 34889999999875433 499999874 56765
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=36.40 E-value=5.1e+02 Score=26.91 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=24.6
Q ss_pred eeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 301 YAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 301 ~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
.++.+++.++|..+--. ...+.|-+|++..-+..
T Consensus 461 G~R~~~vSp~gqhLAsG-----------Dr~GnlrVy~Lq~l~~~ 494 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASG-----------DRGGNLRVYDLQELEYT 494 (1080)
T ss_pred ceEEEEECCCcceeccc-----------CccCceEEEEehhhhhh
Confidence 56778888888866665 36678999988765543
No 122
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=36.19 E-value=2.7e+02 Score=24.96 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=38.3
Q ss_pred EECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEec
Q 043816 207 FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFC 270 (378)
Q Consensus 207 ~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~ 270 (378)
+.+|+||..+.......-...+...+...+.|+.+++|..... - .+-....++-|++...+
T Consensus 198 yY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHh--t-nlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 198 YYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHH--T-NLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---S--S----EEEETTEEEEEEE-
T ss_pred hhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccc--c-CCCceeeCCEEEEEecc
Confidence 7899999888765432223457778888999999999977652 3 56668888899998875
No 123
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=36.09 E-value=4.1e+02 Score=25.66 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=86.5
Q ss_pred eEEEEcCCCcceeec-CCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC--CceEEeecc--
Q 043816 120 DIALWNPSTKKHVLL-PKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS--NSSRRIRVD-- 194 (378)
Q Consensus 120 ~~~V~NP~T~~~~~L-P~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t--~~W~~~~~~-- 194 (378)
.+-|||++|++..-. |..+... .....-+++-+..+-|.+.......-..+....++-|...+ +.|.+++-.
T Consensus 246 ~Igvw~~~t~q~~d~~~~s~~ds---ag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n~~~~W~~i~~gt~ 322 (465)
T KOG2714|consen 246 KIGVWHAVTQQAQDVQPISSYDS---AGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRNTSGNWIEIAYGTS 322 (465)
T ss_pred cccccchhhhceeeeeeccCccc---cCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCCccceEEEecCCcc
Confidence 588999999965543 4444332 34455566666555454444444333445678888998888 889887621
Q ss_pred ---------CCccccCCC---CceEEC-------------C--eeEEEEEeCC--------CCCCCCEEEEEECCCceEe
Q 043816 195 ---------FPYYFSHPR---DGTFAR-------------G--HVHWLVLNEP--------EGYNGDLIVAFDLKSEEFF 239 (378)
Q Consensus 195 ---------~p~~~~~~~---~~v~~~-------------G--~lYwl~~~~~--------~~~~~~~il~fD~~~~~~~ 239 (378)
.|......- ..++.+ | ..||+..... .....+.+++++...+.-+
T Consensus 323 ~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~~idv~~~~~~~~~~~~tr~rGm~s~~pg~~~~~s~k~l~Le~~~~~~s 402 (465)
T KOG2714|consen 323 SGEVRVIDQHPETVGVGPCLFQTFEVHGSPLGLIDVCSDGGHVRVWNSTRFRGMISTQPGSTPEASFKKLALEEGDEFSS 402 (465)
T ss_pred ccceEeeeccccccCCCCeEEEEEEecCCCcceeehhhhCCcceEEeecccccccccCCCCCcccccceeeehhccccce
Confidence 111100000 011112 2 4555553321 1123466888887766555
Q ss_pred ee----cCCCCCCCC------------CCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC
Q 043816 240 EV----PLPHLENRD------------SGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE 283 (378)
Q Consensus 240 ~i----~~P~~~~~~------------~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~ 283 (378)
+. ..|.....+ .+....|..-+++||++...+. .+++|+.-+
T Consensus 403 ~~~gNd~~~~gd~~d~~vfi~Kl~~s~~~~i~~ls~gGdRlfv~rs~~~--~v~vw~~~~ 460 (465)
T KOG2714|consen 403 MSSGNDSGPVGDGDDQQVFIQKLVPSAGGLIVRLSSGGDRLFVVRSVES--PVTVWEVLE 460 (465)
T ss_pred eeecccccccCCchhhhhhhhhhccccCCcEEEEecCCeeEEEEEeccC--ceeEEEecC
Confidence 41 233332221 0113345555669999988875 999997643
No 124
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=35.65 E-value=3.5e+02 Score=24.72 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=48.2
Q ss_pred eeEEEEeCCeEEEEEecCCCCcEEEEEEcC-c-eeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCC
Q 043816 254 LMYMGNFSGCLYFSCFCDYPEPVDIWIMKE-S-WTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK 331 (378)
Q Consensus 254 ~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~-W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 331 (378)
-..+...+|+|.+..+ . .+.+|.++. . +..+..+..+. .+..+...++.|++.+- ..+
T Consensus 91 V~ai~~~~~~lv~~~g--~--~l~v~~l~~~~~l~~~~~~~~~~-------~i~sl~~~~~~I~vgD~---------~~s 150 (321)
T PF03178_consen 91 VTAICSFNGRLVVAVG--N--KLYVYDLDNSKTLLKKAFYDSPF-------YITSLSVFKNYILVGDA---------MKS 150 (321)
T ss_dssp EEEEEEETTEEEEEET--T--EEEEEEEETTSSEEEEEEE-BSS-------SEEEEEEETTEEEEEES---------SSS
T ss_pred ceEhhhhCCEEEEeec--C--EEEEEEccCcccchhhheecceE-------EEEEEeccccEEEEEEc---------ccC
Confidence 3456677888555543 3 999999998 6 88877776521 22333334667777731 344
Q ss_pred cEEEEEECCCCeEEEEEEEe
Q 043816 332 WELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 332 ~~l~~yd~~t~~~~~~v~~~ 351 (378)
-.++.|+.+.+++. .+.-.
T Consensus 151 v~~~~~~~~~~~l~-~va~d 169 (321)
T PF03178_consen 151 VSLLRYDEENNKLI-LVARD 169 (321)
T ss_dssp EEEEEEETTTE-EE-EEEEE
T ss_pred EEEEEEEccCCEEE-EEEec
Confidence 56777788788788 77643
No 125
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.65 E-value=3.2e+02 Score=25.66 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=43.2
Q ss_pred CeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
|..+.....+. .|.+|.+.-. ..+.++.- -..-.+-+++++.|..|+-+ ..++.|-+||+++
T Consensus 304 ~~~l~s~SrDk--tIk~wdv~tg-~cL~tL~g----hdnwVr~~af~p~Gkyi~Sc-----------aDDktlrvwdl~~ 365 (406)
T KOG0295|consen 304 GQVLGSGSRDK--TIKIWDVSTG-MCLFTLVG----HDNWVRGVAFSPGGKYILSC-----------ADDKTLRVWDLKN 365 (406)
T ss_pred ccEEEeecccc--eEEEEeccCC-eEEEEEec----ccceeeeeEEcCCCeEEEEE-----------ecCCcEEEEEecc
Confidence 34555555555 8999988652 11222221 01234457777788888877 5889999999999
Q ss_pred CeEE
Q 043816 342 QRAA 345 (378)
Q Consensus 342 ~~~~ 345 (378)
++..
T Consensus 366 ~~cm 369 (406)
T KOG0295|consen 366 LQCM 369 (406)
T ss_pred ceee
Confidence 9988
No 126
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.28 E-value=74 Score=30.23 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=44.6
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC----ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEE
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE----SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDW 336 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~----~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~ 336 (378)
+|.=.++++.+. .+..|-+++ .|.-+.. ....-+++..+|+.|++. ..+.++..
T Consensus 323 Dg~~~V~Gs~dr--~i~~wdlDgn~~~~W~gvr~---------~~v~dlait~Dgk~vl~v-----------~~d~~i~l 380 (519)
T KOG0293|consen 323 DGFRFVTGSPDR--TIIMWDLDGNILGNWEGVRD---------PKVHDLAITYDGKYVLLV-----------TVDKKIRL 380 (519)
T ss_pred CCceeEecCCCC--cEEEecCCcchhhccccccc---------ceeEEEEEcCCCcEEEEE-----------ecccceee
Confidence 444333444443 999999988 7876653 123447778889988888 47889999
Q ss_pred EECCCCeEE
Q 043816 337 YDLQNQRAA 345 (378)
Q Consensus 337 yd~~t~~~~ 345 (378)
||.+++.-+
T Consensus 381 ~~~e~~~dr 389 (519)
T KOG0293|consen 381 YNREARVDR 389 (519)
T ss_pred echhhhhhh
Confidence 999988777
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.75 E-value=1.8e+02 Score=26.75 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=40.5
Q ss_pred cEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 275 PVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 275 ~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
++.||.|+..=+...+|..+ ....-++++..+.+|-+. +....+-.||+..+++- ++-
T Consensus 379 TvKvWdLrNMRsplATIRtd-----S~~NRvavs~g~~iIAiP-----------hDNRqvRlfDlnG~Rla-RlP 436 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIRTD-----SPANRVAVSKGHPIIAIP-----------HDNRQVRLFDLNGNRLA-RLP 436 (481)
T ss_pred eEEEeeeccccCcceeeecC-----CccceeEeecCCceEEec-----------cCCceEEEEecCCCccc-cCC
Confidence 99999998833445555541 112236677666678887 57789999999999988 643
No 128
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=32.33 E-value=1.4e+02 Score=29.21 Aligned_cols=52 Identities=19% Similarity=0.382 Sum_probs=39.5
Q ss_pred cEEEEEEcC-----ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 275 PVDIWIMKE-----SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 275 ~i~iW~l~~-----~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
.+.+|.... .|.+.|.-+- .-+++.+..+.|+... ..+.+++.||...++..
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~---------~gicfspsne~l~vsV----------G~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPC---------RGICFSPSNEALLVSV----------GYDKKINIYDIRSQAST 244 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCc---------CcceecCCccceEEEe----------cccceEEEeeccccccc
Confidence 999999887 7888886665 2256666666666653 46889999999988877
No 129
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.49 E-value=5.4e+02 Score=25.67 Aligned_cols=115 Identities=12% Similarity=0.031 Sum_probs=63.0
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEE
Q 043816 227 LIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALA 306 (378)
Q Consensus 227 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~ 306 (378)
.|+.|++.....+...- .+.. ++ .....-.+.++..+...+....+..|..++ ....++-- ..-....-++
T Consensus 81 ~v~~ys~~~g~it~~~s-t~~h--~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~~~---~~~~~~~sl~ 151 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLS-TDKH--YG-NVNEILDAQRLGCIYSVGADLKVVYILEKE--KVIIRIWK---EQKPLVSSLC 151 (541)
T ss_pred cEEEEEecCCeEEEEEe-cCCC--CC-cceeeecccccCceEecCCceeEEEEeccc--ceeeeeec---cCCCccceEE
Confidence 48889987765433210 0111 11 222233344555555555445788888776 11111211 0111233467
Q ss_pred EeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEeccCCCceeEEEEEec
Q 043816 307 YSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDS 366 (378)
Q Consensus 307 ~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~s 366 (378)
+.++|.+++.. ...+-+||.++++.- + .+.|+..- -+.+.|+.+
T Consensus 152 is~D~~~l~~a-------------s~~ik~~~~~~kevv-~-~ftgh~s~-v~t~~f~~~ 195 (541)
T KOG4547|consen 152 ISPDGKILLTA-------------SRQIKVLDIETKEVV-I-TFTGHGSP-VRTLSFTTL 195 (541)
T ss_pred EcCCCCEEEec-------------cceEEEEEccCceEE-E-EecCCCcc-eEEEEEEEe
Confidence 77787766655 578999999999887 3 35555443 456666666
No 130
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=30.72 E-value=4e+02 Score=23.93 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=66.8
Q ss_pred ECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCcee
Q 043816 208 ARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWT 286 (378)
Q Consensus 208 ~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~ 286 (378)
.+|.+|=-++.. ....|-.+|+.+++. ...++|...- ---++..+++|+.++-.+. ..-+|..+. ..
T Consensus 54 ~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~~~F-----gEGit~~~d~l~qLTWk~~--~~f~yd~~t-l~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPPRYF-----GEGITILGDKLYQLTWKEG--TGFVYDPNT-LK 121 (264)
T ss_dssp ETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESSSS--EEEEEETTT-TE
T ss_pred CCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCcccc-----ceeEEEECCEEEEEEecCC--eEEEEcccc-ce
Confidence 457777544332 334699999998766 4578886543 3346777999999987766 555554433 34
Q ss_pred eeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 287 KVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 287 ~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
++.+++.+. ..+ +++.+|+.+++. ..+.+|+..|+++-+..++|.+.
T Consensus 122 ~~~~~~y~~----EGW---GLt~dg~~Li~S-----------DGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 122 KIGTFPYPG----EGW---GLTSDGKRLIMS-----------DGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEE-SS----S-----EEEECSSCEEEE------------SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEEEEecCC----cce---EEEcCCCEEEEE-----------CCccceEEECCcccceEEEEEEE
Confidence 444555421 122 233567777777 26789999999987666466543
No 131
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=30.60 E-value=63 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=15.0
Q ss_pred CCcEEEEEECCCCeEEEEEE
Q 043816 330 NKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~~~~v~ 349 (378)
..++|+.||++|++.+ .+.
T Consensus 35 ~~GRll~ydp~t~~~~-vl~ 53 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETT-VLL 53 (89)
T ss_dssp --EEEEEEETTTTEEE-EEE
T ss_pred CCcCEEEEECCCCeEE-Eeh
Confidence 3578999999999998 654
No 132
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=30.40 E-value=4.3e+02 Score=24.17 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=94.6
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce----EEeec
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS----RRIRV 193 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W----~~~~~ 193 (378)
+..++|||-.|......-|++ ..-+..-.|.|+++ |. -+.. -...+.||+..+..= +...
T Consensus 76 DGklIvWDs~TtnK~haipl~------s~WVMtCA~sPSg~-~V-AcGG-------LdN~Csiy~ls~~d~~g~~~v~r- 139 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLP------SSWVMTCAYSPSGN-FV-ACGG-------LDNKCSIYPLSTRDAEGNVRVSR- 139 (343)
T ss_pred CCeEEEEEcccccceeEEecC------ceeEEEEEECCCCC-eE-EecC-------cCceeEEEecccccccccceeee-
Confidence 445689998876655433333 23455566777654 22 2211 245788888875311 1111
Q ss_pred cCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEeCCeEEEEEecCC
Q 043816 194 DFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNFSGCLYFSCFCDY 272 (378)
Q Consensus 194 ~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~ 272 (378)
.++....+-+.+-+++ --|-++..++. ...--|+++.+-.. +..-..... ...|...+++.++.+.++.
T Consensus 140 ~l~gHtgylScC~f~d-D~~ilT~SGD~-----TCalWDie~g~~~~~f~GH~gDV~----slsl~p~~~ntFvSg~cD~ 209 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFLD-DNHILTGSGDM-----TCALWDIETGQQTQVFHGHTGDVM----SLSLSPSDGNTFVSGGCDK 209 (343)
T ss_pred eecCccceeEEEEEcC-CCceEecCCCc-----eEEEEEcccceEEEEecCCcccEE----EEecCCCCCCeEEeccccc
Confidence 2222211222244555 34555554432 24456666654322 222111111 3334445778888888877
Q ss_pred CCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 273 PEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 273 ~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
.-.||.+.+. .-+..+.. --.....+.++++|.-+.-. ..+...-.||++.++--
T Consensus 210 --~aklWD~R~~-~c~qtF~g----hesDINsv~ffP~G~afatG-----------SDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 210 --SAKLWDVRSG-QCVQTFEG----HESDINSVRFFPSGDAFATG-----------SDDATCRLYDLRADQEL 264 (343)
T ss_pred --ceeeeeccCc-ceeEeecc----cccccceEEEccCCCeeeec-----------CCCceeEEEeecCCcEE
Confidence 7889988762 11111111 00122346677788766666 36677778888886544
No 133
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=30.15 E-value=4e+02 Score=23.72 Aligned_cols=106 Identities=13% Similarity=0.041 Sum_probs=59.9
Q ss_pred CeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEe---CCeEEEEEecCCCCcEEEEEEcCce
Q 043816 210 GHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNF---SGCLYFSCFCDYPEPVDIWIMKESW 285 (378)
Q Consensus 210 G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~---~G~L~l~~~~~~~~~i~iW~l~~~W 285 (378)
|.+...++. ..+...|+++.++++. +.-. + +..-++. ++++ +.+.++. ++.||.++..
T Consensus 127 nSi~~AgGD-------~~~y~~dlE~G~i~r~~rGHt------D-YvH~vv~R~~~~qi-lsG~EDG--tvRvWd~kt~- 188 (325)
T KOG0649|consen 127 NSILFAGGD-------GVIYQVDLEDGRIQREYRGHT------D-YVHSVVGRNANGQI-LSGAEDG--TVRVWDTKTQ- 188 (325)
T ss_pred CcEEEecCC-------eEEEEEEecCCEEEEEEcCCc------c-eeeeeeecccCcce-eecCCCc--cEEEEecccc-
Confidence 566655533 2588999999999774 4322 2 3333333 2322 2233333 9999999760
Q ss_pred eeeEEEec-C---ccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 286 TKVFSFAG-G---VFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 286 ~~~~~i~~-~---~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
..+..|.. . .......-.+.++..+.+.++.. .+..+-.|+++.-+-.
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG------------gGp~lslwhLrsse~t 240 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG------------GGPKLSLWHLRSSEST 240 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEeccCceEEec------------CCCceeEEeccCCCce
Confidence 11223333 1 11112233345555676766655 7788999999988877
No 134
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=29.24 E-value=4.8e+02 Score=24.39 Aligned_cols=136 Identities=13% Similarity=-0.056 Sum_probs=67.7
Q ss_pred EEEEEEcCCCceEEeeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCce--EeeecCC-CCCCCCCC
Q 043816 177 EIAVYSLKSNSSRRIRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE--FFEVPLP-HLENRDSG 252 (378)
Q Consensus 177 ~~~vyss~t~~W~~~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~--~~~i~~P-~~~~~~~~ 252 (378)
.......++-.|...... .....+... .+..+|.+|.....+ .|.+||.++.. |+.-..+ ....
T Consensus 36 ~~~~~~~g~~~W~~~~~~-~~~~~~~~~~~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~~---- 103 (370)
T COG1520 36 AVANNTSGTLLWSVSLGS-GGGGIYAGPAPADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAVAQL---- 103 (370)
T ss_pred EEEcccCcceeeeeeccc-CccceEeccccEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCcceec----
Confidence 334444556677543201 111111222 489999999985443 49999998765 7554333 0111
Q ss_pred CeeEEEEeCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCC
Q 043816 253 NLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK 331 (378)
Q Consensus 253 ~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 331 (378)
..-+...+|++++-.... .++.++. ...++..-.... . .....+..+ .+..|+.. ..+
T Consensus 104 -~~~~~~~~G~i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~v~--~~~~v~~~-----------s~~ 162 (370)
T COG1520 104 -SGPILGSDGKIYVGSWDG-----KLYALDASTGTLVWSRNVGG-S-PYYASPPVV--GDGTVYVG-----------TDD 162 (370)
T ss_pred -cCceEEeCCeEEEecccc-----eEEEEECCCCcEEEEEecCC-C-eEEecCcEE--cCcEEEEe-----------cCC
Confidence 112233367755554332 5666665 333333222211 0 111222222 23456666 256
Q ss_pred cEEEEEECCCCeEE
Q 043816 332 WELDWYDLQNQRAA 345 (378)
Q Consensus 332 ~~l~~yd~~t~~~~ 345 (378)
++++..|.+|++..
T Consensus 163 g~~~al~~~tG~~~ 176 (370)
T COG1520 163 GHLYALNADTGTLK 176 (370)
T ss_pred CeEEEEEccCCcEE
Confidence 78888888876664
No 135
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=28.75 E-value=97 Score=20.85 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=15.5
Q ss_pred CCcEEEEEECCCCeEEEEEE
Q 043816 330 NKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~~~~v~ 349 (378)
..-+++.||++||+++ -++
T Consensus 39 ~~iKIfkyd~~tNei~-L~K 57 (63)
T PF14157_consen 39 GQIKIFKYDEDTNEIT-LKK 57 (63)
T ss_dssp TEEEEEEEETTTTEEE-EEE
T ss_pred CeEEEEEeCCCCCeEE-EEE
Confidence 4457999999999998 654
No 136
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=28.64 E-value=4.3e+02 Score=23.62 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|.-+..+..+-.|--.||.+.+--+-+ ...+-.+...|..+ .+.+.. ...+.+|+..++.=.+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~------dsqVNrLeiTpdk~--~LAaa~--------~qhvRlyD~~S~np~P 75 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHP------DSQVNRLEITPDKK--DLAAAG--------NQHVRLYDLNSNNPNP 75 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecC------ccceeeEEEcCCcc--hhhhcc--------CCeeEEEEccCCCCCc
Q ss_pred eeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEE
Q 043816 191 IRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSC 268 (378)
Q Consensus 191 ~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~ 268 (378)
+. .+.....+- +|-+.-.=.|+...+++.. +-.-|+.+-..... ..|..... ++.--++--|+.
T Consensus 76 v~---t~e~h~kNVtaVgF~~dgrWMyTgseDgt----~kIWdlR~~~~qR~~~~~spVn~-------vvlhpnQteLis 141 (311)
T KOG0315|consen 76 VA---TFEGHTKNVTAVGFQCDGRWMYTGSEDGT----VKIWDLRSLSCQRNYQHNSPVNT-------VVLHPNQTELIS 141 (311)
T ss_pred ee---EEeccCCceEEEEEeecCeEEEecCCCce----EEEEeccCcccchhccCCCCcce-------EEecCCcceEEe
Q ss_pred ecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEE
Q 043816 269 FCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQ 347 (378)
Q Consensus 269 ~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~ 347 (378)
+...+ .|.||.|.+ .=+....-+. ......+.+..+|..+.-. .+.+..++|++-+++....
T Consensus 142 ~dqsg-~irvWDl~~~~c~~~liPe~-----~~~i~sl~v~~dgsml~a~-----------nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 142 GDQSG-NIRVWDLGENSCTHELIPED-----DTSIQSLTVMPDGSMLAAA-----------NNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred ecCCC-cEEEEEccCCccccccCCCC-----CcceeeEEEcCCCcEEEEe-----------cCCccEEEEEccCCCcccc
Q ss_pred EE----EeccCCCceeEEEEEe
Q 043816 348 VT----VHGVPQGCRYTMIYVD 365 (378)
Q Consensus 348 v~----~~~~~~~~~~~~~y~~ 365 (378)
++ ++..... .-.+.|.|
T Consensus 205 l~P~~k~~ah~~~-il~C~lSP 225 (311)
T KOG0315|consen 205 LEPVHKFQAHNGH-ILRCLLSP 225 (311)
T ss_pred ceEhhheecccce-EEEEEECC
No 137
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=28.57 E-value=1.9e+02 Score=27.29 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=31.6
Q ss_pred cEEEEEEcCceeeeEEEecCcccccee-eEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 275 PVDIWIMKESWTKVFSFAGGVFGIFTY-AKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 275 ~i~iW~l~~~W~~~~~i~~~~~~~~~~-~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
++.+|.++-+ +..+++.- +.. ..-++..++|++|--. ..++.+..||+++++-.
T Consensus 138 TvR~WD~~Te-Tp~~t~Kg-----H~~WVlcvawsPDgk~iASG-----------~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 138 TVRLWDLDTE-TPLFTCKG-----HKNWVLCVAWSPDGKKIASG-----------SKDGSIRLWDPKTGQQI 192 (480)
T ss_pred eEEeeccCCC-CcceeecC-----CccEEEEEEECCCcchhhcc-----------ccCCeEEEecCCCCCcc
Confidence 8999988640 11122211 111 1123445677777666 36788888998888766
No 138
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=27.76 E-value=1.9e+02 Score=25.44 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=38.0
Q ss_pred ccceEEeecCCceEEEEcCCCcceeec--CCCCCCCCCCCceeeEEeeeCCCCCEEEEEE
Q 043816 108 CNGLIALKNGENDIALWNPSTKKHVLL--PKFWSDFDDYADLVDGFGYDAVSDDYKVVRL 165 (378)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~ 165 (378)
.+|.|..-....++|..||.|+.-..+ .+..... ....+++-|+|.-++-+||.-
T Consensus 37 a~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al---~g~~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 37 ANGQLYGLGSTGRLYTINPATGAATPVGASPLTVAL---SGTAFGVDFNPAADRLRVVSN 93 (236)
T ss_pred CCCCEEEEeCCCcEEEEECCCCeEEEeecccccccc---cCceEEEecCcccCcEEEEcc
Confidence 477775555677899999999997777 3332221 234777888888888777743
No 139
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=27.43 E-value=5.8e+02 Score=24.80 Aligned_cols=69 Identities=19% Similarity=0.359 Sum_probs=42.6
Q ss_pred eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 260 FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 260 ~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.+|+ +++....+. +|.||.+++.=..+.++.- . .....-+++.+.|+.|+-. ..++.+.+||+
T Consensus 213 ~d~~-~l~s~s~D~-tiriwd~~~~~~~~~~l~g-H---~~~v~~~~f~p~g~~i~Sg-----------s~D~tvriWd~ 275 (456)
T KOG0266|consen 213 PDGS-YLLSGSDDK-TLRIWDLKDDGRNLKTLKG-H---STYVTSVAFSPDGNLLVSG-----------SDDGTVRIWDV 275 (456)
T ss_pred CCCc-EEEEecCCc-eEEEeeccCCCeEEEEecC-C---CCceEEEEecCCCCEEEEe-----------cCCCcEEEEec
Confidence 3555 444444332 9999999551122233321 0 1123446777888777777 47899999999
Q ss_pred CCCeEE
Q 043816 340 QNQRAA 345 (378)
Q Consensus 340 ~t~~~~ 345 (378)
++.+..
T Consensus 276 ~~~~~~ 281 (456)
T KOG0266|consen 276 RTGECV 281 (456)
T ss_pred cCCeEE
Confidence 997666
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=27.42 E-value=3.3e+02 Score=26.86 Aligned_cols=72 Identities=15% Similarity=0.052 Sum_probs=42.1
Q ss_pred EEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEE
Q 043816 258 GNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWY 337 (378)
Q Consensus 258 ~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~y 337 (378)
.-.+|+-.+++++.. ++.||.|.. ..-+|..+....-.....+++..+.++.|-+ ..++.+.+|
T Consensus 473 L~pdgrtLivGGeas--tlsiWDLAa---pTprikaeltssapaCyALa~spDakvcFsc-----------csdGnI~vw 536 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEAS--TLSIWDLAA---PTPRIKAELTSSAPACYALAISPDAKVCFSC-----------CSDGNIAVW 536 (705)
T ss_pred ecCCCceEEeccccc--eeeeeeccC---CCcchhhhcCCcchhhhhhhcCCccceeeee-----------ccCCcEEEE
Confidence 445788888887755 999999975 1122222110000112235556666555555 367788888
Q ss_pred ECCCCeEE
Q 043816 338 DLQNQRAA 345 (378)
Q Consensus 338 d~~t~~~~ 345 (378)
|+.++.+.
T Consensus 537 DLhnq~~V 544 (705)
T KOG0639|consen 537 DLHNQTLV 544 (705)
T ss_pred Ecccceee
Confidence 88877766
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=26.76 E-value=2.2e+02 Score=28.00 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=34.6
Q ss_pred EEEEECCCceEee-ecCCCCCCCCCCCeeEE-EEeCCeEEEEEecCCCCcEEEEEEcC
Q 043816 228 IVAFDLKSEEFFE-VPLPHLENRDSGNLMYM-GNFSGCLYFSCFCDYPEPVDIWIMKE 283 (378)
Q Consensus 228 il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l-~~~~G~L~l~~~~~~~~~i~iW~l~~ 283 (378)
+-..|+++.+-+. .+++..... .-.| +..+-+||+.|..+. .|.||.|.+
T Consensus 489 lsiWDLAapTprikaeltssapa----CyALa~spDakvcFsccsdG--nI~vwDLhn 540 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPA----CYALAISPDAKVCFSCCSDG--NIAVWDLHN 540 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchh----hhhhhcCCccceeeeeccCC--cEEEEEccc
Confidence 6677887776654 356654432 2234 445779999998887 999999976
No 142
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=26.75 E-value=32 Score=30.67 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHhcCC-hhchheeeeccccchhhccChhH
Q 043816 2 ERLPRDLNMNILSRLS-VKCLLRLRCVSKPFCSLIDSQKF 40 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp-~~sl~r~~~VcK~W~~~i~~p~F 40 (378)
.+||.+++.+||.||| -.+|..++.|--.-..++.+...
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~i 242 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRI 242 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHH
Confidence 4799999999999998 89998888876555555554433
No 143
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=26.65 E-value=3.7e+02 Score=24.61 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=41.5
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC----ceeeeEEEecCccccceeeEEEEE--eecCCEEEEeeccCCCccccccCCcEE
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE----SWTKVFSFAGGVFGIFTYAKALAY--SKSGDKVLVDKFLYDEDEDEGINKWEL 334 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~----~W~~~~~i~~~~~~~~~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~l 334 (378)
+|...+..+.+. .|-+|..-+ -|...- . ...++.+ ..++..|+-+ ..+..+
T Consensus 58 ~gs~~aSgG~Dr--~I~LWnv~gdceN~~~lkg---H-------sgAVM~l~~~~d~s~i~S~-----------gtDk~v 114 (338)
T KOG0265|consen 58 DGSCFASGGSDR--AIVLWNVYGDCENFWVLKG---H-------SGAVMELHGMRDGSHILSC-----------GTDKTV 114 (338)
T ss_pred CCCeEeecCCcc--eEEEEeccccccceeeecc---c-------cceeEeeeeccCCCEEEEe-----------cCCceE
Confidence 566666666666 899998543 576651 1 1112333 2477778887 588999
Q ss_pred EEEECCCCeEE
Q 043816 335 DWYDLQNQRAA 345 (378)
Q Consensus 335 ~~yd~~t~~~~ 345 (378)
..||.+|++-.
T Consensus 115 ~~wD~~tG~~~ 125 (338)
T KOG0265|consen 115 RGWDAETGKRI 125 (338)
T ss_pred EEEecccceee
Confidence 99999998866
No 144
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.63 E-value=4.2e+02 Score=22.89 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=47.3
Q ss_pred eeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEec-Ccc--------ccceeeEEEEEeecCCEEEEeeccCCCc
Q 043816 254 LMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAG-GVF--------GIFTYAKALAYSKSGDKVLVDKFLYDED 324 (378)
Q Consensus 254 ~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~-~~~--------~~~~~~~~~~~~~~g~~vl~~~~~~~~~ 324 (378)
......++|...++..... .+.+|.++..=.....+++ +.. .......-+.+..+|--|+.-
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G--~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l------- 84 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSG--LLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL------- 84 (219)
T ss_pred ceEEEEeCCCEEEEEeCCC--eEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-------
Confidence 3444666776655555555 8999999871011111222 111 112233445566677655444
Q ss_pred cccccCCcEEEEEECCCCeEEEEEE
Q 043816 325 EDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 325 ~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
..+..|.||.+-+.|. +|.
T Consensus 85 -----sng~~y~y~~~L~~W~-~vs 103 (219)
T PF07569_consen 85 -----SNGDSYSYSPDLGCWI-RVS 103 (219)
T ss_pred -----eCCCEEEeccccceeE-Eec
Confidence 4567899999999999 765
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.76 E-value=4.4e+02 Score=26.90 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=0.0
Q ss_pred eeEEEEeCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCc
Q 043816 254 LMYMGNFSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332 (378)
Q Consensus 254 ~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 332 (378)
...+.+-+.+|.++..... .+++-.++. +-.+...+... +.-....-+.+..+|+.+... ...+
T Consensus 433 ~i~ftid~~k~~~~s~~~~--~le~~el~~ps~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~-----------~t~g 497 (691)
T KOG2048|consen 433 AISFTIDKNKLFLVSKNIF--SLEEFELETPSFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAI-----------STRG 497 (691)
T ss_pred eeEEEecCceEEEEecccc--eeEEEEecCcchhhhhccccc--cCCCcceeEEEcCCCCEEEEE-----------eccc
Q ss_pred EEEEEECCCCeEE
Q 043816 333 ELDWYDLQNQRAA 345 (378)
Q Consensus 333 ~l~~yd~~t~~~~ 345 (378)
.+++||+++++.+
T Consensus 498 ~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 498 QIFVYNLETLESH 510 (691)
T ss_pred eEEEEEcccceee
No 146
>PRK04043 tolB translocation protein TolB; Provisional
Probab=25.54 E-value=6.1e+02 Score=24.41 Aligned_cols=189 Identities=10% Similarity=0.075 Sum_probs=102.3
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
...+++.|..|++...|-..+. ......+.|++ +..++.... .....+.+++..++.++.+. ..+.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g-------~~~~~~~SPDG-~~la~~~~~-----~g~~~Iy~~dl~~g~~~~LT-~~~~ 277 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQG-------MLVVSDVSKDG-SKLLLTMAP-----KGQPDIYLYDTNTKTLTQIT-NYPG 277 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCC-------cEEeeEECCCC-CEEEEEEcc-----CCCcEEEEEECCCCcEEEcc-cCCC
Confidence 4579999999999888864332 11122344543 333333321 13467888888899998887 3332
Q ss_pred cccCCCCceEECC-eeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCC-eEEEEEecCCC--
Q 043816 198 YFSHPRDGTFARG-HVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSG-CLYFSCFCDYP-- 273 (378)
Q Consensus 198 ~~~~~~~~v~~~G-~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G-~L~l~~~~~~~-- 273 (378)
........-+| .||+...... ...|...|+.+...+.+..- ... ... ..-+| .|.++......
T Consensus 278 --~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~--g~~----~~~-~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 278 --IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFH--GKN----NSS-VSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred --ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccC--CCc----Cce-ECCCCCEEEEEEcCCCccc
Confidence 11111333456 6787765432 24599999988777555321 100 111 22244 44444433211
Q ss_pred --CcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 274 --EPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 274 --~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
...+||+++- .+..+..-. .... ....++|+.|++.... .....|..++++.+.-. .+
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~~-------~~~~-p~~SPDG~~I~f~~~~--------~~~~~L~~~~l~g~~~~-~l 407 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTANG-------VNQF-PRFSSDGGSIMFIKYL--------GNQSALGIIRLNYNKSF-LF 407 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCCC-------CcCC-eEECCCCCEEEEEEcc--------CCcEEEEEEecCCCeeE-Ee
Confidence 2367777753 443322110 1112 3456789888777410 23446889999888776 55
Q ss_pred EE
Q 043816 349 TV 350 (378)
Q Consensus 349 ~~ 350 (378)
-.
T Consensus 408 ~~ 409 (419)
T PRK04043 408 PL 409 (419)
T ss_pred ec
Confidence 43
No 147
>PTZ00420 coronin; Provisional
Probab=25.47 E-value=7.2e+02 Score=25.19 Aligned_cols=196 Identities=8% Similarity=0.072 Sum_probs=89.3
Q ss_pred CCceEEEEcCCCcce--eecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc-eEEeec
Q 043816 117 GENDIALWNPSTKKH--VLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS-SRRIRV 193 (378)
Q Consensus 117 ~~~~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~-W~~~~~ 193 (378)
.+..+.||+..++.. ..+..+......+...+..+.++|.. .+.++... ....+.+++.+++. -..+.
T Consensus 95 ~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g-~~iLaSgS-------~DgtIrIWDl~tg~~~~~i~- 165 (568)
T PTZ00420 95 EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN-YYIMCSSG-------FDSFVNIWDIENEKRAFQIN- 165 (568)
T ss_pred CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC-CeEEEEEe-------CCCeEEEEECCCCcEEEEEe-
Confidence 456788898765421 11100000001112344556666643 23332222 23567888887764 11111
Q ss_pred cCCccccCCCCceE--ECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEE--eCCeEEEEE
Q 043816 194 DFPYYFSHPRDGTF--ARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGN--FSGCLYFSC 268 (378)
Q Consensus 194 ~~p~~~~~~~~~v~--~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~--~~G~L~l~~ 268 (378)
.+. .-.++. -+|.+...+..+ ..|..+|+.+..- ..+........ .. .+.+.. .++...+.+
T Consensus 166 -~~~----~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i~tl~gH~g~~~-s~-~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 166 -MPK----KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIASSFHIHDGGKN-TK-NIWIDGLGGDDNYILST 232 (568)
T ss_pred -cCC----cEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEEEEEecccCCce-eE-EEEeeeEcCCCCEEEEE
Confidence 110 001222 256654333222 2488999987643 22333222110 00 111111 345555554
Q ss_pred ecCC--CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 269 FCDY--PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 269 ~~~~--~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+.+. ..++.||.+.. . ..+..+.++. ......|.....+|.+++.. ..+..+.+|++.++.+.
T Consensus 233 G~d~~~~R~VkLWDlr~~~-~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsG-----------kGD~tIr~~e~~~~~~~ 298 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTT-SALVTMSIDN--ASAPLIPHYDESTGLIYLIG-----------KGDGNCRYYQHSLGSIR 298 (568)
T ss_pred EcCCCCccEEEEEECCCCC-CceEEEEecC--CccceEEeeeCCCCCEEEEE-----------ECCCeEEEEEccCCcEE
Confidence 4432 23799999885 1 1222333211 01122233333345544444 36788999999888777
Q ss_pred EEEE
Q 043816 346 GQVT 349 (378)
Q Consensus 346 ~~v~ 349 (378)
.+.
T Consensus 299 -~l~ 301 (568)
T PTZ00420 299 -KVN 301 (568)
T ss_pred -eec
Confidence 655
No 148
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=25.42 E-value=1e+02 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=27.3
Q ss_pred CCeeEeecccceEEeecCCceEEEEcCCCcceee
Q 043816 100 GETPIIDTCNGLIALKNGENDIALWNPSTKKHVL 133 (378)
Q Consensus 100 ~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~ 133 (378)
.++.-++-.||.+|+....+..+..+|+||+-..
T Consensus 31 sr~s~VS~~~~~~C~s~~~~~~~~vDP~Tgra~s 64 (263)
T PF07861_consen 31 SRFSSVSFAGGRACLSDTAGSVYTVDPLTGRAVS 64 (263)
T ss_pred ceeEEEecCCceEEEecCCCceEEeccccccccc
Confidence 4455677789999999988889999999977543
No 149
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=25.26 E-value=2.7e+02 Score=21.03 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=29.4
Q ss_pred ceEEEEcCCCcc-eeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEE
Q 043816 119 NDIALWNPSTKK-HVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLI 166 (378)
Q Consensus 119 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~ 166 (378)
-.++..+|-+++ |... . ....+.+..|...+.|.|....
T Consensus 16 A~v~~~~p~~~~~W~~~---~------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV---K------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES---S------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC---C------eEEEEEEEEECCCCEEEEEEEE
Confidence 368899999988 9876 1 4566667778888888877765
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=25.03 E-value=5.6e+02 Score=23.77 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=26.3
Q ss_pred EEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 305 LAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 305 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
+++..++..|+-. ..+..++.|+++.+.+. .|..+
T Consensus 193 iGiA~~~k~imsa-----------s~dt~i~lw~lkGq~L~-~idtn 227 (420)
T KOG2096|consen 193 IGIAGNAKYIMSA-----------SLDTKICLWDLKGQLLQ-SIDTN 227 (420)
T ss_pred EeecCCceEEEEe-----------cCCCcEEEEecCCceee-eeccc
Confidence 6666666666666 47889999999988888 77644
No 151
>PTZ00420 coronin; Provisional
Probab=24.05 E-value=5.9e+02 Score=25.78 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=33.6
Q ss_pred cEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 275 PVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 275 ~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
.+.||.++.. .....+... ....-+.++.+|..+... ..++.+.+||+++++..
T Consensus 149 tIrIWDl~tg-~~~~~i~~~-----~~V~SlswspdG~lLat~-----------s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 149 FVNIWDIENE-KRAFQINMP-----KKLSSLKWNIKGNLLSGT-----------CVGKHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEECCCC-cEEEEEecC-----CcEEEEEECCCCCEEEEE-----------ecCCEEEEEECCCCcEE
Confidence 8999988761 122233321 122335566788866555 35778999999988765
No 152
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=23.26 E-value=1.3e+02 Score=23.39 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=18.8
Q ss_pred CCcEEEEEECCCCeEEEEEEEecc
Q 043816 330 NKWELDWYDLQNQRAAGQVTVHGV 353 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~~~~v~~~~~ 353 (378)
..-.++.||.++++|+ +..++|.
T Consensus 27 ~~v~vY~f~~~~~~W~-K~~iEG~ 49 (122)
T PF06058_consen 27 SHVVVYKFDHETNEWE-KTDIEGT 49 (122)
T ss_dssp EEEEEEEEETTTTEEE-EEEEEEE
T ss_pred CeEEEEeecCCCCcEe-ecCcEee
Confidence 4557888899999999 9888764
No 153
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=23.06 E-value=5.9e+02 Score=23.36 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=50.1
Q ss_pred CEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEE
Q 043816 226 DLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKAL 305 (378)
Q Consensus 226 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~ 305 (378)
..|..+|+.+..-..+---..... .+.-....|+ .+.++.+. .|.+|-.... ......+. .-++.
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i~----ci~~~~~~~~-vIsgsWD~--~ik~wD~R~~-~~~~~~d~-------~kkVy 139 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGIR----CIEYSYEVGC-VISGSWDK--TIKFWDPRNK-VVVGTFDQ-------GKKVY 139 (323)
T ss_pred ceEEEEEecCCcceeeccCCCceE----EEEeeccCCe-EEEcccCc--cEEEEecccc-cccccccc-------CceEE
Confidence 358899998766555422111110 1111112222 22233344 8888876530 00111111 12556
Q ss_pred EEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 306 AYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 306 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
++.-.|++|++. ..+.+++.||+++...-
T Consensus 140 ~~~v~g~~LvVg-----------~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 140 CMDVSGNRLVVG-----------TSDRKVLIYDLRNLDEP 168 (323)
T ss_pred EEeccCCEEEEe-----------ecCceEEEEEcccccch
Confidence 666688888887 47889999999887654
No 154
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=22.97 E-value=8.5e+02 Score=25.13 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=36.3
Q ss_pred EeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 259 NFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 259 ~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
..++.+.+.++++. ++.||.-++ .+..|.++. -..+ -..+..|||++.=+ .++.+.+|-
T Consensus 228 ~~~~~~Ivs~gEDr--tlriW~~~e---~~q~I~lPt---tsiW-sa~~L~NgDIvvg~------------SDG~VrVfT 286 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDR--TLRIWKKDE---CVQVITLPT---TSIW-SAKVLLNGDIVVGG------------SDGRVRVFT 286 (745)
T ss_pred cCCCCeEEEecCCc--eEEEeecCc---eEEEEecCc---cceE-EEEEeeCCCEEEec------------cCceEEEEE
Confidence 45678888888777 999999874 334455421 1122 23344577755544 566666664
Q ss_pred CC
Q 043816 339 LQ 340 (378)
Q Consensus 339 ~~ 340 (378)
.+
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 44
No 155
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=22.89 E-value=6.1e+02 Score=23.43 Aligned_cols=187 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred ceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccccCCCCceEEC--CeeEEEEEeCCCCC
Q 043816 146 DLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFAR--GHVHWLVLNEPEGY 223 (378)
Q Consensus 146 ~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~--G~lYwl~~~~~~~~ 223 (378)
..+-.++|+| +++|.+++-. .....+|+..|-.=-... .+.......-..|..+ |.+|..+..+..
T Consensus 217 ~~vrsiSfHP-sGefllvgTd--------Hp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-- 284 (430)
T KOG0640|consen 217 EPVRSISFHP-SGEFLLVGTD--------HPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRYSSTGSLYVTASKDGA-- 284 (430)
T ss_pred ceeeeEeecC-CCceEEEecC--------CCceeEEeccceeEeeec-CcccccccceeEEEecCCccEEEEeccCCc--
Q ss_pred CCCEEEEEE-CCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCcccccee
Q 043816 224 NGDLIVAFD-LKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTY 301 (378)
Q Consensus 224 ~~~~il~fD-~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~ 301 (378)
|-.+| +.+.....| +.-.+..- .-.....+|+-.|..+.+. .+.+|++-..=..+....-...+.-..
T Consensus 285 ----IklwDGVS~rCv~t~~~AH~gsev----cSa~Ftkn~kyiLsSG~DS--~vkLWEi~t~R~l~~YtGAg~tgrq~~ 354 (430)
T KOG0640|consen 285 ----IKLWDGVSNRCVRTIGNAHGGSEV----CSAVFTKNGKYILSSGKDS--TVKLWEISTGRMLKEYTGAGTTGRQKH 354 (430)
T ss_pred ----EEeeccccHHHHHHHHhhcCCcee----eeEEEccCCeEEeecCCcc--eeeeeeecCCceEEEEecCCcccchhh
Q ss_pred eEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEeccCCCceeEEEEEec
Q 043816 302 AKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDS 366 (378)
Q Consensus 302 ~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~s 366 (378)
..--.+..+.|.|++.. -....++.||-+|..=. .+---|...- -+.+.+.|+
T Consensus 355 rtqAvFNhtEdyVl~pD----------Eas~slcsWdaRtadr~-~l~slgHn~a-~R~i~HSP~ 407 (430)
T KOG0640|consen 355 RTQAVFNHTEDYVLFPD----------EASNSLCSWDARTADRV-ALLSLGHNGA-VRWIVHSPV 407 (430)
T ss_pred hhhhhhcCccceEEccc----------cccCceeeccccchhhh-hhcccCCCCC-ceEEEeCCC
No 156
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.88 E-value=4.5e+02 Score=23.29 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=39.4
Q ss_pred EeCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEE
Q 043816 259 NFSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWY 337 (378)
Q Consensus 259 ~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~y 337 (378)
+.+|+-|+.++.+. .+.+|.-.. .=.+.| .- .+++....-...+| ..+.-+ ..+..+.+|
T Consensus 26 N~dGnY~ltcGsdr--tvrLWNp~rg~liktY--sg---hG~EVlD~~~s~Dn-skf~s~-----------GgDk~v~vw 86 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDR--TVRLWNPLRGALIKTY--SG---HGHEVLDAALSSDN-SKFASC-----------GGDKAVQVW 86 (307)
T ss_pred ccCCCEEEEcCCCc--eEEeecccccceeeee--cC---CCceeeeccccccc-cccccC-----------CCCceEEEE
Confidence 34689999998888 999997654 222222 21 01222222222223 334444 467788999
Q ss_pred ECCCCeEE
Q 043816 338 DLQNQRAA 345 (378)
Q Consensus 338 d~~t~~~~ 345 (378)
|.+|++.-
T Consensus 87 DV~TGkv~ 94 (307)
T KOG0316|consen 87 DVNTGKVD 94 (307)
T ss_pred EcccCeee
Confidence 99998765
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=22.47 E-value=6.7e+02 Score=24.81 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=32.8
Q ss_pred EEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEeccCCCceeEEEEEec
Q 043816 303 KALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDS 366 (378)
Q Consensus 303 ~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~s 366 (378)
..+++.++|-++... ...++++.||++..+-- --.+...... -..+.|++|
T Consensus 254 stvaf~~~G~~L~aG-----------~s~G~~i~YD~R~~k~P-v~v~sah~~s-Vt~vafq~s 304 (673)
T KOG4378|consen 254 STVAFSECGTYLCAG-----------NSKGELIAYDMRSTKAP-VAVRSAHDAS-VTRVAFQPS 304 (673)
T ss_pred ceeeecCCceEEEee-----------cCCceEEEEecccCCCC-ceEeeecccc-eeEEEeeec
Confidence 457777888877777 47889999999987654 2223333332 345556555
No 158
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.03 E-value=5.2e+02 Score=22.32 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCeeEeecccceEEeecCCceEEEEcCCCcceeecCCCCCCCC---------CCCceeeEEeeeCCCCCEEEEEEEEecC
Q 043816 100 GETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFD---------DYADLVDGFGYDAVSDDYKVVRLIQFGR 170 (378)
Q Consensus 100 ~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~---------~~~~~~~~lg~d~~~~~ykVv~~~~~~~ 170 (378)
.....+.+++..|++-.....++|||-.+++.. +++.+..+- ........+..+ .+..=||.+.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~-~~~~Si~pll~~~~~~~~~~~~~i~~~~lt--~~G~PiV~ls---- 85 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV-LPPVSIAPLLNSSPVSDKSSSPNITSCSLT--SNGVPIVTLS---- 85 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeec-cCCccHHHHhcccccccCCCCCcEEEEEEc--CCCCEEEEEe----
Confidence 344566777777666656788999998887654 333111100 001222222222 1222333332
Q ss_pred CCCcccEEEEEEcCCCceEEee
Q 043816 171 GKVEYTEIAVYSLKSNSSRRIR 192 (378)
Q Consensus 171 ~~~~~~~~~vyss~t~~W~~~~ 192 (378)
.....+|+..-++|-.+.
T Consensus 86 ----ng~~y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 86 ----NGDSYSYSPDLGCWIRVS 103 (219)
T ss_pred ----CCCEEEeccccceeEEec
Confidence 235689999999999987
No 159
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=21.92 E-value=7.4e+02 Score=24.07 Aligned_cols=194 Identities=13% Similarity=0.179 Sum_probs=98.9
Q ss_pred cccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
|.+|-.+... ....+.++++.+.+...+-.+.. +...+..+.+.+++. .++... ....+.|++...
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~----h~~~v~~~~fs~d~~--~l~s~s-------~D~tiriwd~~~ 234 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG----HTRGVSDVAFSPDGS--YLLSGS-------DDKTLRIWDLKD 234 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccchhhccccc----cccceeeeEECCCCc--EEEEec-------CCceEEEeeccC
Confidence 3344433333 45678999997766311111111 145666667766654 233222 356788888844
Q ss_pred C--ceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe
Q 043816 186 N--SSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF 260 (378)
Q Consensus 186 ~--~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~ 260 (378)
+ .=+.+. ..+... .++.+ .|.+..-+..+ ..|-..|+.+.+. ..+..-.... ......-
T Consensus 235 ~~~~~~~l~-gH~~~v----~~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~~~~~l~~hs~~i-----s~~~f~~ 298 (456)
T KOG0266|consen 235 DGRNLKTLK-GHSTYV----TSVAFSPDGNLLVSGSDD------GTVRIWDVRTGECVRKLKGHSDGI-----SGLAFSP 298 (456)
T ss_pred CCeEEEEec-CCCCce----EEEEecCCCCEEEEecCC------CcEEEEeccCCeEEEeeeccCCce-----EEEEECC
Confidence 3 223333 111111 12322 34333333222 2388888887433 2232221111 1122334
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeee--EEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKV--FSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~--~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
+|.+.+....+. .+.||.+.. |.+. ..+.-.... . ...-+..+++|+.++.. ..+..+-.||
T Consensus 299 d~~~l~s~s~d~--~i~vwd~~~-~~~~~~~~~~~~~~~-~-~~~~~~fsp~~~~ll~~-----------~~d~~~~~w~ 362 (456)
T KOG0266|consen 299 DGNLLVSASYDG--TIRVWDLET-GSKLCLKLLSGAENS-A-PVTSVQFSPNGKYLLSA-----------SLDRTLKLWD 362 (456)
T ss_pred CCCEEEEcCCCc--cEEEEECCC-CceeeeecccCCCCC-C-ceeEEEECCCCcEEEEe-----------cCCCeEEEEE
Confidence 577777765555 999998865 2321 222221111 1 23446667899888888 4677899999
Q ss_pred CCCCeEE
Q 043816 339 LQNQRAA 345 (378)
Q Consensus 339 ~~t~~~~ 345 (378)
+.+....
T Consensus 363 l~~~~~~ 369 (456)
T KOG0266|consen 363 LRSGKSV 369 (456)
T ss_pred ccCCcce
Confidence 9977666
No 160
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=21.90 E-value=1.1e+03 Score=26.06 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=43.8
Q ss_pred EeCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCcc-------ccceeeEEEEEeecCCEEEEeeccCCCccccccC
Q 043816 259 NFSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVF-------GIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN 330 (378)
Q Consensus 259 ~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~-------~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~ 330 (378)
..+|.|+++...+. .|.+|..+. ....+.......+ ..+....-+++.++|. +++.+ ..
T Consensus 812 d~dG~LYVADs~N~--rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD----------t~ 878 (1057)
T PLN02919 812 AKDGQIYVADSYNH--KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD----------TN 878 (1057)
T ss_pred eCCCcEEEEECCCC--EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE----------CC
Confidence 34688888877666 899998876 2222221111001 1122333466677776 55553 46
Q ss_pred CcEEEEEECCCCeE
Q 043816 331 KWELDWYDLQNQRA 344 (378)
Q Consensus 331 ~~~l~~yd~~t~~~ 344 (378)
...+..+|+++++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 77899999999875
No 161
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=21.03 E-value=7e+02 Score=23.45 Aligned_cols=189 Identities=13% Similarity=0.064 Sum_probs=89.7
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
..++++|..|++...+..... ......+.|+++.+ ++... ......+.+++.+++..+.+. ....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~-------~~~~~~~spDg~~l-~~~~~-----~~~~~~i~~~d~~~~~~~~l~-~~~~- 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG-------MNGAPAFSPDGSKL-AVSLS-----KDGNPDIYVMDLDGKQLTRLT-NGPG- 278 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC-------CccceEECCCCCEE-EEEEC-----CCCCccEEEEECCCCCEEECC-CCCC-
Confidence 579999999998776654322 11224555554322 22211 112346777788887766654 2111
Q ss_pred ccCCCCceEECC-eeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEE
Q 043816 199 FSHPRDGTFARG-HVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVD 277 (378)
Q Consensus 199 ~~~~~~~v~~~G-~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~ 277 (378)
........-+| .|++..... ....|..+|+.+.....+....... . ... ...+|+..+...... ....
T Consensus 279 -~~~~~~~s~dg~~l~~~s~~~----g~~~iy~~d~~~~~~~~l~~~~~~~---~-~~~-~spdg~~i~~~~~~~-~~~~ 347 (417)
T TIGR02800 279 -IDTEPSWSPDGKSIAFTSDRG----GSPQIYMMDADGGEVRRLTFRGGYN---A-SPS-WSPDGDLIAFVHREG-GGFN 347 (417)
T ss_pred -CCCCEEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCCCCc---c-CeE-ECCCCCEEEEEEccC-CceE
Confidence 00011122355 355544322 1235888898877766553221111 0 111 223555544443332 2455
Q ss_pred EEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 278 IWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 278 iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
||.++- .|.+. +.... .... ..+.++|..|++.... .....++.++.+.+..+ .+.
T Consensus 348 i~~~d~~~~~~~~--l~~~~----~~~~-p~~spdg~~l~~~~~~--------~~~~~l~~~~~~g~~~~-~~~ 405 (417)
T TIGR02800 348 IAVMDLDGGGERV--LTDTG----LDES-PSFAPNGRMILYATTR--------GGRGVLGLVSTDGRFRA-RLP 405 (417)
T ss_pred EEEEeCCCCCeEE--ccCCC----CCCC-ceECCCCCEEEEEEeC--------CCcEEEEEEECCCceee-ECC
Confidence 555543 33222 11110 0111 2455678877776310 12245677777666655 543
No 162
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=21.00 E-value=62 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCCCcHHHHHHHHhcCChhchheeeecc
Q 043816 1 MERLPRDLNMNILSRLSVKCLLRLRCVS 28 (378)
Q Consensus 1 i~~LP~Dll~eIL~rLp~~sl~r~~~Vc 28 (378)
+.++|-+++.-||.++.+..|.+.-.-|
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 4579999999999999999999887766
No 163
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.39 E-value=1e+03 Score=25.01 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=52.4
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.|+..+...=+. ++..|.|+. .=-+.++.+- -..+.-+++.+.|++|+... .+...+++|++
T Consensus 403 ~g~~llssSLDG--tVRAwDlkRYrNfRTft~P~-----p~QfscvavD~sGelV~AG~----------~d~F~IfvWS~ 465 (893)
T KOG0291|consen 403 RGNVLLSSSLDG--TVRAWDLKRYRNFRTFTSPE-----PIQFSCVAVDPSGELVCAGA----------QDSFEIFVWSV 465 (893)
T ss_pred cCCEEEEeecCC--eEEeeeecccceeeeecCCC-----ceeeeEEEEcCCCCEEEeec----------cceEEEEEEEe
Confidence 344433333333 788888866 2122233332 11234477778899888884 46778999999
Q ss_pred CCCeEEEEEEEeccCCC--ceeEEEEEeccccCC
Q 043816 340 QNQRAAGQVTVHGVPQG--CRYTMIYVDSLVSLA 371 (378)
Q Consensus 340 ~t~~~~~~v~~~~~~~~--~~~~~~y~~sl~~~~ 371 (378)
+|+++. .| +.|++.- +..+.+-...|++.+
T Consensus 466 qTGqll-Di-LsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 466 QTGQLL-DI-LSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ecCeee-eh-hcCCCCcceeeEEccccCeEEecc
Confidence 999998 65 4444331 123334444454444
No 164
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.02 E-value=1.1e+03 Score=25.38 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCCCeeEEEEeCC--eEEEEEecCCCCcEEEEEEcC-------------ceeeeEE--Eec---CccccceeeEEE----
Q 043816 250 DSGNLMYMGNFSG--CLYFSCFCDYPEPVDIWIMKE-------------SWTKVFS--FAG---GVFGIFTYAKAL---- 305 (378)
Q Consensus 250 ~~~~~~~l~~~~G--~L~l~~~~~~~~~i~iW~l~~-------------~W~~~~~--i~~---~~~~~~~~~~~~---- 305 (378)
+.. +..-+..++ .|.+..+.+. .|.||.|+. -|..... +++ ..-+++-.+..-
T Consensus 249 H~n-nVssvlfhp~q~lIlSnsEDk--sirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 249 HYN-NVSSVLFHPHQDLILSNSEDK--SIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred ccC-CcceEEecCccceeEecCCCc--cEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Q ss_pred EEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE-EeccC---CCceeEEEEEec
Q 043816 306 AYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT-VHGVP---QGCRYTMIYVDS 366 (378)
Q Consensus 306 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~-~~~~~---~~~~~~~~y~~s 366 (378)
+++-+|+.++.. ++..+..||+.|.+-. .+. +.... .. .+.+.|.|.
T Consensus 326 a~~v~~n~LfYv------------kd~~i~~~d~~t~~d~-~v~~lr~~g~~~~~-~~smsYNpa 376 (1202)
T KOG0292|consen 326 AYAVNGNGLFYV------------KDRFIRSYDLRTQKDT-AVASLRRPGTLWQP-PRSLSYNPA 376 (1202)
T ss_pred eEEEcCCEEEEE------------ccceEEeeeccccccc-eeEeccCCCcccCC-cceeeeccc
Done!