Query 043816
Match_columns 378
No_of_seqs 137 out of 1661
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 99.4 2.4E-10 8.1E-15 103.8 26.0 236 105-369 51-299 (306)
2 4asc_A Kelch repeat and BTB do 99.4 3.1E-10 1.1E-14 103.6 25.0 206 120-348 68-283 (315)
3 2woz_A Kelch repeat and BTB do 99.3 2.9E-10 9.9E-15 103.9 24.1 205 121-348 80-293 (318)
4 2vpj_A Kelch-like protein 12; 99.3 2E-09 6.7E-14 97.4 25.9 214 105-349 58-285 (301)
5 1zgk_A Kelch-like ECH-associat 99.3 2.4E-09 8.3E-14 97.3 25.9 200 119-349 90-294 (308)
6 2xn4_A Kelch-like protein 2; s 99.3 2.3E-09 8E-14 97.0 25.3 214 106-349 58-283 (302)
7 3ii7_A Kelch-like protein 7; p 99.3 1.5E-09 5.1E-14 98.5 22.9 201 118-349 23-232 (306)
8 2vpj_A Kelch-like protein 12; 99.2 6.6E-09 2.2E-13 93.9 23.6 223 119-372 31-261 (301)
9 4asc_A Kelch repeat and BTB do 99.1 7.1E-09 2.4E-13 94.5 21.1 205 119-349 13-228 (315)
10 1zgk_A Kelch-like ECH-associat 99.1 6.4E-09 2.2E-13 94.5 20.0 224 119-372 39-270 (308)
11 2xn4_A Kelch-like protein 2; s 99.1 9E-09 3.1E-13 93.1 20.8 223 119-372 30-259 (302)
12 2uvk_A YJHT; unknown function, 99.1 4.1E-09 1.4E-13 97.8 18.7 172 107-292 17-238 (357)
13 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 2.4E-11 8.3E-16 79.7 1.2 42 1-42 9-50 (53)
14 2ovr_B FBW7, F-BOX/WD repeat p 99.0 2.7E-07 9.3E-12 87.8 28.9 46 1-46 19-64 (445)
15 2e31_A FBS1, F-box only protei 99.0 7.5E-11 2.5E-15 104.9 2.5 48 1-48 51-99 (297)
16 3v7d_B Cell division control p 99.0 3.4E-07 1.2E-11 87.4 28.5 43 2-44 16-59 (464)
17 2uvk_A YJHT; unknown function, 99.0 1.4E-07 4.9E-12 87.3 23.1 206 119-349 86-349 (357)
18 2woz_A Kelch repeat and BTB do 99.0 6E-08 2E-12 88.4 20.0 234 110-372 16-261 (318)
19 2zwa_A Leucine carboxyl methyl 98.9 8.2E-08 2.8E-12 97.1 20.9 223 108-351 396-644 (695)
20 1p22_A F-BOX/WD-repeat protein 98.8 4.4E-07 1.5E-11 86.2 19.4 43 2-44 12-58 (435)
21 1k3i_A Galactose oxidase precu 98.5 1.4E-06 4.7E-11 87.6 13.6 109 120-241 220-329 (656)
22 2zwa_A Leucine carboxyl methyl 98.3 2.4E-05 8.2E-10 79.0 17.5 188 174-373 410-616 (695)
23 1k3i_A Galactose oxidase precu 98.2 1.4E-05 4.9E-10 80.1 13.2 193 121-345 168-382 (656)
24 3l2o_B F-box only protein 4; s 98.0 7.6E-07 2.6E-11 78.3 0.3 47 2-48 6-52 (312)
25 2ast_B S-phase kinase-associat 97.4 2.6E-05 9E-10 71.2 1.0 40 1-40 9-48 (336)
26 2p1m_B Transport inhibitor res 96.9 0.00019 6.5E-09 70.8 0.4 34 1-34 6-40 (594)
27 3ei3_B DNA damage-binding prot 96.7 0.22 7.6E-06 45.3 20.5 191 111-345 88-286 (383)
28 3ogk_B Coronatine-insensitive 96.3 0.00077 2.6E-08 66.4 0.4 33 2-34 14-47 (592)
29 3jrp_A Fusion protein of prote 95.9 0.79 2.7E-05 41.0 18.9 191 111-342 25-241 (379)
30 1l0q_A Surface layer protein; 95.5 1.3 4.3E-05 40.2 18.7 184 111-345 3-193 (391)
31 4e54_B DNA damage-binding prot 95.1 0.38 1.3E-05 44.8 14.1 194 109-345 131-331 (435)
32 3dsm_A Uncharacterized protein 95.0 1.8 6.2E-05 38.6 19.7 211 109-350 2-221 (328)
33 1l0q_A Surface layer protein; 94.7 2.3 7.9E-05 38.4 19.1 189 109-345 85-279 (391)
34 1k8k_C P40, ARP2/3 complex 41 94.5 2.5 8.5E-05 37.6 21.0 192 111-345 22-237 (372)
35 3jro_A Fusion protein of prote 94.4 1.7 5.8E-05 43.8 17.5 191 111-342 23-239 (753)
36 3bws_A Protein LP49; two-domai 94.1 3.5 0.00012 37.8 18.5 202 107-345 178-394 (433)
37 3mbr_X Glutamine cyclotransfer 94.0 2.3 7.9E-05 36.4 15.0 115 207-351 28-143 (243)
38 1ri6_A Putative isomerase YBHE 94.0 3 0.0001 36.5 19.8 105 227-349 152-271 (343)
39 3dwl_C Actin-related protein 2 93.6 1 3.5E-05 40.6 13.0 189 117-344 31-239 (377)
40 3u4y_A Uncharacterized protein 93.5 3.6 0.00012 36.0 18.8 189 108-344 8-210 (331)
41 3hfq_A Uncharacterized protein 93.5 3.9 0.00013 36.2 17.5 151 175-348 17-178 (347)
42 1ri6_A Putative isomerase YBHE 93.4 3.8 0.00013 35.8 16.6 141 176-345 60-215 (343)
43 2ojh_A Uncharacterized protein 93.2 3.4 0.00012 35.0 16.4 209 108-349 51-265 (297)
44 1gxr_A ESG1, transducin-like e 93.2 4 0.00014 35.5 22.1 194 108-345 61-259 (337)
45 2z2n_A Virginiamycin B lyase; 93.1 3.8 0.00013 35.1 19.6 189 107-345 107-299 (299)
46 1nir_A Nitrite reductase; hemo 92.4 8.2 0.00028 37.2 19.0 194 108-345 147-359 (543)
47 1npe_A Nidogen, entactin; glyc 92.1 5.1 0.00017 34.1 21.5 197 105-348 43-245 (267)
48 4aez_A CDC20, WD repeat-contai 91.9 7.2 0.00025 35.4 21.1 196 105-345 99-297 (401)
49 2hqs_A Protein TOLB; TOLB, PAL 91.9 7.7 0.00026 35.7 19.3 185 119-348 203-393 (415)
50 4gga_A P55CDC, cell division c 91.9 7.5 0.00026 35.6 21.3 201 102-345 108-314 (420)
51 3nol_A Glutamine cyclotransfer 91.6 4 0.00014 35.3 13.1 114 207-350 50-164 (262)
52 4gqb_B Methylosome protein 50; 91.0 8.4 0.00029 34.4 18.7 195 109-345 93-293 (344)
53 1r5m_A SIR4-interacting protei 90.5 9.4 0.00032 34.3 18.6 185 109-341 217-425 (425)
54 1rwi_B Serine/threonine-protei 90.5 7.1 0.00024 32.9 18.3 189 107-343 75-266 (270)
55 3vgz_A Uncharacterized protein 90.3 8.8 0.0003 33.6 24.3 204 105-345 96-307 (353)
56 3dsm_A Uncharacterized protein 90.2 9.3 0.00032 33.8 21.2 193 108-345 52-257 (328)
57 2iwa_A Glutamine cyclotransfer 90.0 8.6 0.0003 33.3 14.0 113 210-351 32-145 (266)
58 2vdu_B TRNA (guanine-N(7)-)-me 90.0 12 0.00041 34.6 17.8 65 262-345 210-275 (450)
59 3sjl_D Methylamine dehydrogena 89.8 7.5 0.00026 35.7 14.1 125 209-355 237-377 (386)
60 3nok_A Glutaminyl cyclase; bet 89.5 5.5 0.00019 34.5 12.2 111 208-351 63-174 (268)
61 4aow_A Guanine nucleotide-bind 89.4 10 0.00034 33.0 19.8 96 227-343 238-339 (340)
62 4ery_A WD repeat-containing pr 89.1 10 0.00035 32.7 23.2 186 112-345 38-227 (312)
63 2dg1_A DRP35, lactonase; beta 88.7 12 0.0004 32.7 20.5 209 108-350 54-271 (333)
64 1gxr_A ESG1, transducin-like e 88.1 12 0.00041 32.3 20.8 177 111-339 155-335 (337)
65 3u4y_A Uncharacterized protein 88.1 12 0.00042 32.4 17.8 188 120-348 109-310 (331)
66 3g4e_A Regucalcin; six bladed 88.1 12 0.00042 32.3 22.5 202 107-350 22-238 (297)
67 3zwl_B Eukaryotic translation 87.5 14 0.00048 32.3 22.2 199 111-345 46-253 (369)
68 1yfq_A Cell cycle arrest prote 87.4 14 0.00047 32.1 21.1 193 111-345 71-286 (342)
69 1jmx_B Amine dehydrogenase; ox 87.4 14 0.00048 32.2 16.9 60 275-351 276-335 (349)
70 3v65_B Low-density lipoprotein 87.0 18 0.00061 32.9 20.3 211 107-367 125-342 (386)
71 3jrp_A Fusion protein of prote 86.3 17 0.00057 32.0 19.7 199 111-349 71-295 (379)
72 1rwi_B Serine/threonine-protei 86.2 14 0.00047 31.0 16.5 193 104-345 29-226 (270)
73 2aq5_A Coronin-1A; WD40 repeat 86.2 19 0.00064 32.4 22.3 204 109-349 93-308 (402)
74 3fm0_A Protein CIAO1; WDR39,SG 86.1 18 0.0006 32.0 20.7 188 111-339 30-223 (345)
75 4g56_B MGC81050 protein; prote 86.0 18 0.00063 32.2 17.6 189 107-342 148-344 (357)
76 3no2_A Uncharacterized protein 86.0 16 0.00054 31.4 15.9 188 110-345 6-199 (276)
77 1p22_A F-BOX/WD-repeat protein 85.9 21 0.0007 32.7 22.7 192 103-345 137-329 (435)
78 3sfz_A APAF-1, apoptotic pepti 85.5 40 0.0014 35.6 23.1 191 109-345 626-832 (1249)
79 3no2_A Uncharacterized protein 84.8 18 0.00062 31.1 13.5 142 175-350 14-163 (276)
80 4g56_B MGC81050 protein; prote 84.6 21 0.00073 31.7 18.0 195 109-345 105-305 (357)
81 2pm9_A Protein WEB1, protein t 84.2 23 0.00078 31.7 17.9 200 110-345 127-341 (416)
82 3mkq_A Coatomer beta'-subunit; 84.0 36 0.0012 33.9 23.4 189 109-345 67-263 (814)
83 1q7f_A NHL, brain tumor CG1071 83.9 19 0.00064 30.5 24.9 204 107-350 38-246 (286)
84 1sq9_A Antiviral protein SKI8; 83.5 24 0.00081 31.4 19.0 204 112-343 141-397 (397)
85 3vl1_A 26S proteasome regulato 83.2 26 0.00087 31.5 24.2 190 108-343 107-324 (420)
86 3iz6_a 40S ribosomal protein R 82.4 27 0.00093 31.2 19.1 99 227-345 181-284 (380)
87 2z3z_A Dipeptidyl aminopeptida 82.3 39 0.0013 33.0 23.1 196 119-345 235-439 (706)
88 1got_B GT-beta; complex (GTP-b 82.2 25 0.00087 30.8 22.2 187 111-345 69-261 (340)
89 4a11_B DNA excision repair pro 81.9 27 0.00093 30.9 18.9 201 111-345 58-280 (408)
90 3vgz_A Uncharacterized protein 81.7 26 0.00087 30.5 22.3 190 118-345 68-266 (353)
91 4gqb_B Methylosome protein 50; 81.7 28 0.00095 30.9 18.4 193 108-345 137-335 (344)
92 3v64_C Agrin; beta propeller, 81.5 29 0.00099 31.0 22.2 193 106-345 81-279 (349)
93 3mmy_A MRNA export factor; mRN 81.3 26 0.00091 30.4 22.4 196 109-345 97-308 (368)
94 3q7m_A Lipoprotein YFGL, BAMB; 81.0 30 0.001 30.8 18.5 190 105-345 99-300 (376)
95 2mad_H Methylamine dehydrogena 80.3 27 0.00093 31.5 13.0 55 276-345 298-354 (373)
96 3bg1_A Protein SEC13 homolog; 79.8 30 0.001 30.0 15.6 72 109-192 24-97 (316)
97 2bkl_A Prolyl endopeptidase; m 79.3 51 0.0017 32.4 22.0 197 120-349 203-404 (695)
98 1k8k_C P40, ARP2/3 complex 41 79.0 32 0.0011 30.0 21.6 191 110-345 65-280 (372)
99 3m0c_C LDL receptor, low-densi 78.4 60 0.0021 32.8 24.8 180 147-367 472-656 (791)
100 3scy_A Hypothetical bacterial 77.9 36 0.0012 29.9 20.5 103 227-349 234-346 (361)
101 3iuj_A Prolyl endopeptidase; h 77.4 58 0.002 32.1 19.6 170 149-349 237-412 (693)
102 3hfq_A Uncharacterized protein 77.2 36 0.0012 29.6 27.0 209 108-350 95-327 (347)
103 1nir_A Nitrite reductase; hemo 76.7 54 0.0018 31.3 17.3 207 109-344 236-461 (543)
104 3odt_A Protein DOA1; ubiquitin 76.4 34 0.0012 28.9 22.2 189 109-345 29-218 (313)
105 1n7d_A LDL receptor, low-densi 76.3 13 0.00045 37.0 10.2 141 176-345 475-618 (699)
106 2hqs_A Protein TOLB; TOLB, PAL 76.1 46 0.0016 30.3 18.6 187 119-349 159-351 (415)
107 3lrv_A PRE-mRNA-splicing facto 75.9 40 0.0014 29.5 19.9 200 103-345 88-298 (343)
108 3mkq_A Coatomer beta'-subunit; 75.7 66 0.0023 31.9 23.3 186 111-345 27-221 (814)
109 3dwl_C Actin-related protein 2 75.1 11 0.00037 33.5 8.7 140 175-342 32-178 (377)
110 4ggc_A P55CDC, cell division c 74.4 39 0.0013 28.6 20.5 67 107-187 34-100 (318)
111 3jro_A Fusion protein of prote 74.4 73 0.0025 31.7 15.4 96 227-343 32-134 (753)
112 3vl1_A 26S proteasome regulato 74.4 48 0.0016 29.6 20.2 97 227-341 314-419 (420)
113 3dm0_A Maltose-binding peripla 74.2 69 0.0024 31.3 22.6 192 107-345 439-636 (694)
114 2z2n_A Virginiamycin B lyase; 74.1 38 0.0013 28.4 21.7 196 104-349 20-219 (299)
115 2qc5_A Streptogramin B lactona 73.7 39 0.0013 28.4 20.2 195 104-348 25-223 (300)
116 3fm0_A Protein CIAO1; WDR39,SG 73.5 47 0.0016 29.1 21.2 143 175-345 37-185 (345)
117 3bws_A Protein LP49; two-domai 72.9 53 0.0018 29.5 21.3 191 109-341 223-432 (433)
118 3i2n_A WD repeat-containing pr 71.9 48 0.0016 28.6 18.1 184 118-343 43-245 (357)
119 2qc5_A Streptogramin B lactona 71.7 44 0.0015 28.1 21.1 194 107-350 70-267 (300)
120 3ow8_A WD repeat-containing pr 71.4 51 0.0017 28.6 20.5 187 109-345 91-283 (321)
121 3f3f_A Nucleoporin SEH1; struc 71.1 48 0.0016 28.2 13.1 108 209-343 22-145 (351)
122 3bg1_A Protein SEC13 homolog; 71.0 51 0.0017 28.4 19.1 68 263-349 229-301 (316)
123 3mmy_A MRNA export factor; mRN 70.9 40 0.0014 29.2 11.3 69 262-348 54-123 (368)
124 3e5z_A Putative gluconolactona 70.8 48 0.0016 28.1 15.9 196 107-345 77-290 (296)
125 3v65_B Low-density lipoprotein 70.6 62 0.0021 29.2 21.7 190 109-345 87-281 (386)
126 2dg1_A DRP35, lactonase; beta 70.5 30 0.001 30.0 10.3 120 209-348 55-177 (333)
127 2ojh_A Uncharacterized protein 70.2 46 0.0016 27.6 19.9 188 118-348 21-212 (297)
128 3p5b_L Low density lipoprotein 69.2 68 0.0023 29.2 21.9 181 146-367 159-344 (400)
129 2z3z_A Dipeptidyl aminopeptida 68.7 90 0.0031 30.4 19.2 157 175-348 234-397 (706)
130 2aq5_A Coronin-1A; WD40 repeat 68.4 65 0.0022 28.7 19.5 195 111-351 146-351 (402)
131 1ijq_A LDL receptor, low-densi 68.4 60 0.002 28.3 21.5 187 112-345 4-199 (316)
132 3lrv_A PRE-mRNA-splicing facto 67.4 47 0.0016 29.0 11.0 67 261-345 138-205 (343)
133 3k26_A Polycomb protein EED; W 67.3 61 0.0021 28.0 21.4 64 111-188 87-150 (366)
134 1q7f_A NHL, brain tumor CG1071 67.2 55 0.0019 27.5 22.3 190 107-341 86-280 (286)
135 1jmx_B Amine dehydrogenase; ox 66.8 25 0.00087 30.4 9.0 121 209-343 10-136 (349)
136 2xyi_A Probable histone-bindin 66.4 76 0.0026 28.8 13.4 92 227-341 255-353 (430)
137 2ovr_B FBW7, F-BOX/WD repeat p 66.4 76 0.0026 28.7 25.0 117 205-342 324-443 (445)
138 3q7m_A Lipoprotein YFGL, BAMB; 66.2 70 0.0024 28.2 16.3 110 108-240 52-169 (376)
139 3k26_A Polycomb protein EED; W 66.0 65 0.0022 27.8 21.7 65 262-341 299-366 (366)
140 3o4h_A Acylamino-acid-releasin 64.8 97 0.0033 29.4 14.3 194 109-345 122-318 (582)
141 2iwa_A Glutamine cyclotransfer 64.4 68 0.0023 27.5 19.8 193 109-342 31-238 (266)
142 1erj_A Transcriptional repress 64.3 80 0.0027 28.2 24.2 194 109-345 134-345 (393)
143 3e5z_A Putative gluconolactona 64.1 66 0.0023 27.2 20.9 197 111-351 42-255 (296)
144 3hrp_A Uncharacterized protein 63.9 59 0.002 29.6 11.2 112 208-348 140-255 (409)
145 4aez_A CDC20, WD repeat-contai 63.4 83 0.0028 28.1 24.1 194 111-352 148-347 (401)
146 1pby_B Quinohemoprotein amine 63.2 70 0.0024 27.2 19.4 100 227-351 220-320 (337)
147 3iz6_a 40S ribosomal protein R 63.1 82 0.0028 27.9 20.4 72 261-345 260-333 (380)
148 1pjx_A Dfpase, DIISOPROPYLFLUO 61.9 73 0.0025 27.0 21.2 194 117-344 44-259 (314)
149 2ecf_A Dipeptidyl peptidase IV 61.8 1.2E+02 0.0042 29.6 19.8 194 120-345 264-463 (741)
150 4hw6_A Hypothetical protein, I 61.6 1E+02 0.0034 28.4 12.9 53 205-270 143-201 (433)
151 2pm7_B Protein transport prote 61.2 76 0.0026 26.9 19.1 64 262-342 170-239 (297)
152 3v64_C Agrin; beta propeller, 60.9 89 0.0031 27.7 21.4 190 109-345 44-238 (349)
153 3v7d_B Cell division control p 60.9 97 0.0033 28.1 26.0 195 106-345 129-345 (464)
154 4a11_B DNA excision repair pro 60.3 88 0.003 27.4 20.4 196 112-345 159-369 (408)
155 2oiz_A Aromatic amine dehydrog 60.2 85 0.0029 27.8 11.4 54 277-349 287-341 (361)
156 3c75_H MADH, methylamine dehyd 59.3 1.1E+02 0.0038 28.2 13.1 70 261-345 330-406 (426)
157 3odt_A Protein DOA1; ubiquitin 59.2 79 0.0027 26.5 20.4 93 227-345 206-300 (313)
158 1vyh_C Platelet-activating fac 58.5 1E+02 0.0036 27.7 23.9 191 111-345 164-373 (410)
159 2fp8_A Strictosidine synthase; 58.3 90 0.0031 26.9 12.6 138 119-282 165-312 (322)
160 3vu4_A KMHSV2; beta-propeller 57.7 98 0.0034 27.1 20.2 68 261-344 206-274 (355)
161 3dw8_B Serine/threonine-protei 57.5 1.1E+02 0.0036 27.5 19.7 108 227-349 250-380 (447)
162 3tc9_A Hypothetical hydrolase; 57.4 1.2E+02 0.004 27.9 12.7 109 209-345 149-261 (430)
163 4e54_B DNA damage-binding prot 56.6 1.1E+02 0.0039 27.5 15.3 116 147-283 121-240 (435)
164 2pm7_B Protein transport prote 56.6 91 0.0031 26.4 19.0 69 263-348 220-292 (297)
165 1ijq_A LDL receptor, low-densi 56.1 1E+02 0.0034 26.8 23.6 195 105-345 37-242 (316)
166 1qks_A Cytochrome CD1 nitrite 55.9 1.5E+02 0.005 28.5 22.1 201 109-350 166-382 (567)
167 2pm9_A Protein WEB1, protein t 55.4 1.1E+02 0.0038 27.0 17.1 200 110-345 80-298 (416)
168 1ddw_A GLGF-domain protein hom 55.4 24 0.00081 26.3 5.4 40 119-166 11-51 (120)
169 1sq9_A Antiviral protein SKI8; 54.5 1.1E+02 0.0038 26.8 21.6 69 261-345 197-271 (397)
170 2kwv_A RAD30 homolog B, DNA po 54.5 6.2 0.00021 23.6 1.6 16 2-17 22-37 (48)
171 2ymu_A WD-40 repeat protein; u 53.9 1.4E+02 0.0049 27.8 25.1 179 117-348 323-504 (577)
172 3dm0_A Maltose-binding peripla 52.8 1.7E+02 0.0059 28.4 21.6 184 117-340 492-692 (694)
173 4h5i_A Guanine nucleotide-exch 52.2 1.2E+02 0.0043 26.6 17.7 164 108-293 186-360 (365)
174 1npe_A Nidogen, entactin; glyc 51.3 1E+02 0.0036 25.5 18.7 161 147-345 37-202 (267)
175 2ynn_A Coatomer subunit beta'; 50.3 1.2E+02 0.004 25.8 23.2 189 109-345 67-263 (304)
176 2oaj_A Protein SNI1; WD40 repe 50.1 2.2E+02 0.0076 29.0 19.2 191 111-345 31-246 (902)
177 3zwl_B Eukaryotic translation 49.8 1.2E+02 0.0042 25.9 22.8 204 111-345 88-308 (369)
178 3sov_A LRP-6, low-density lipo 49.8 1.3E+02 0.0045 26.2 22.0 191 108-345 45-242 (318)
179 1erj_A Transcriptional repress 49.1 1.4E+02 0.0049 26.4 20.7 96 227-343 188-289 (393)
180 1evh_A WH1 domain, protein (ME 48.9 37 0.0013 24.9 5.6 42 119-166 11-52 (112)
181 3ei3_B DNA damage-binding prot 48.8 1.4E+02 0.0047 26.2 20.6 158 146-341 74-236 (383)
182 1yfq_A Cell cycle arrest prote 47.4 89 0.003 26.7 9.1 69 261-348 22-95 (342)
183 3p5b_L Low density lipoprotein 47.1 1.6E+02 0.0056 26.5 18.8 192 110-349 84-284 (400)
184 4ery_A WD repeat-containing pr 46.6 1.3E+02 0.0045 25.3 25.4 190 111-345 79-272 (312)
185 1nr0_A Actin interacting prote 45.9 2.1E+02 0.007 27.4 27.6 72 109-189 201-274 (611)
186 1r5m_A SIR4-interacting protei 45.8 1.5E+02 0.0053 25.9 25.6 188 109-345 119-323 (425)
187 3azo_A Aminopeptidase; POP fam 45.8 2.1E+02 0.0072 27.4 22.1 200 119-349 161-376 (662)
188 3hrp_A Uncharacterized protein 45.7 1.7E+02 0.0059 26.4 22.4 201 107-349 139-361 (409)
189 2qe8_A Uncharacterized protein 45.6 1.5E+02 0.0052 25.8 12.3 78 205-283 71-154 (343)
190 3fvz_A Peptidyl-glycine alpha- 45.2 1.5E+02 0.0051 25.5 17.3 164 107-283 152-322 (329)
191 3sov_A LRP-6, low-density lipo 44.9 1.6E+02 0.0054 25.7 15.6 110 209-345 90-201 (318)
192 2xzm_R RACK1; ribosome, transl 44.0 1.6E+02 0.0054 25.5 21.8 94 227-345 195-289 (343)
193 3m0c_C LDL receptor, low-densi 43.9 2.7E+02 0.0091 28.1 20.4 116 205-348 475-595 (791)
194 1i2h_A PSD-ZIP45(homer-1C/VESL 43.6 39 0.0013 26.8 5.2 39 120-166 17-56 (168)
195 3dr2_A Exported gluconolactona 43.4 1.5E+02 0.0052 25.1 11.7 136 104-268 136-295 (305)
196 3i2n_A WD repeat-containing pr 42.6 1.6E+02 0.0054 25.1 21.9 188 110-342 81-292 (357)
197 3ju4_A Endo-N-acetylneuraminid 42.5 1.3E+02 0.0043 27.8 8.9 61 207-270 346-406 (670)
198 1qks_A Cytochrome CD1 nitrite 42.4 2.4E+02 0.0081 27.0 14.5 99 227-349 178-283 (567)
199 3gre_A Serine/threonine-protei 41.8 1.9E+02 0.0065 25.8 17.6 98 227-345 193-296 (437)
200 2ymu_A WD-40 repeat protein; u 41.7 2.2E+02 0.0075 26.5 23.3 95 228-348 327-422 (577)
201 3amr_A 3-phytase; beta-propell 41.7 1.9E+02 0.0067 25.9 22.9 209 107-352 38-275 (355)
202 1yr2_A Prolyl oligopeptidase; 40.4 2.8E+02 0.0095 27.3 23.1 196 120-348 244-447 (741)
203 2pbi_B Guanine nucleotide-bind 40.0 1.9E+02 0.0064 25.2 22.8 183 111-338 168-354 (354)
204 1mda_H Methylamine dehydrogena 39.8 1.7E+02 0.0058 26.3 9.8 49 284-347 303-352 (368)
205 3sfz_A APAF-1, apoptotic pepti 39.7 3.5E+02 0.012 28.3 21.3 193 111-345 671-875 (1249)
206 4h5i_A Guanine nucleotide-exch 39.6 2E+02 0.0067 25.3 16.4 140 175-345 156-304 (365)
207 2ghs_A AGR_C_1268P; regucalcin 38.4 1.9E+02 0.0066 24.9 20.7 201 106-350 57-268 (326)
208 4a0p_A LRP6, LRP-6, low-densit 38.1 2.9E+02 0.0099 26.8 27.2 192 105-345 44-241 (628)
209 1egx_A VAsp, vasodilator-stimu 37.9 56 0.0019 24.0 5.1 42 120-166 12-53 (115)
210 3g4e_A Regucalcin; six bladed 37.7 1.8E+02 0.0063 24.5 18.8 158 147-345 14-186 (297)
211 2xyi_A Probable histone-bindin 37.4 2.3E+02 0.0078 25.4 17.1 195 111-345 196-414 (430)
212 3gre_A Serine/threonine-protei 36.3 1.7E+02 0.006 26.0 9.5 69 261-345 181-249 (437)
213 3scy_A Hypothetical bacterial 36.0 2.1E+02 0.0073 24.7 19.5 144 177-342 30-187 (361)
214 1pgu_A Actin interacting prote 35.9 2.7E+02 0.0094 25.9 21.6 136 175-342 466-615 (615)
215 2ynn_A Coatomer subunit beta'; 35.8 2E+02 0.0068 24.3 24.1 185 112-345 28-221 (304)
216 4hvt_A Ritya.17583.B, post-pro 35.4 3.2E+02 0.011 27.0 11.7 127 207-349 297-436 (711)
217 1xfd_A DIP, dipeptidyl aminope 33.9 3.3E+02 0.011 26.3 16.1 71 118-192 36-107 (723)
218 3v9f_A Two-component system se 33.4 3.6E+02 0.012 26.6 24.3 194 109-349 417-618 (781)
219 2qe8_A Uncharacterized protein 33.1 2.2E+02 0.0076 24.6 9.4 75 261-345 77-158 (343)
220 1pby_B Quinohemoprotein amine 32.0 2.3E+02 0.0077 23.8 13.7 110 227-345 12-128 (337)
221 2hes_X YDR267CP; beta-propelle 31.1 2.5E+02 0.0086 24.0 20.8 71 257-342 256-329 (330)
222 3mbr_X Glutamine cyclotransfer 30.6 2.4E+02 0.0082 23.7 16.8 144 175-351 42-189 (243)
223 1vyh_C Platelet-activating fac 30.1 2.9E+02 0.01 24.5 24.2 139 111-283 122-265 (410)
224 2ghs_A AGR_C_1268P; regucalcin 30.1 2.6E+02 0.009 23.9 14.3 112 210-348 61-174 (326)
225 4a0p_A LRP6, LRP-6, low-densit 28.8 4.1E+02 0.014 25.7 23.9 186 112-345 9-201 (628)
226 3frx_A Guanine nucleotide-bind 28.5 2.7E+02 0.0093 23.6 19.7 96 228-345 131-231 (319)
227 1got_B GT-beta; complex (GTP-b 28.2 2.8E+02 0.0097 23.7 22.9 97 227-345 207-305 (340)
228 2ecf_A Dipeptidyl peptidase IV 28.2 4.2E+02 0.014 25.6 20.4 67 108-192 118-188 (741)
229 2dk7_A Transcription elongatio 27.4 63 0.0021 21.6 3.3 28 111-138 22-49 (73)
230 3frx_A Guanine nucleotide-bind 27.0 2.9E+02 0.0099 23.4 23.3 190 108-345 75-271 (319)
231 2oit_A Nucleoporin 214KDA; NH2 27.0 3.1E+02 0.011 24.9 9.5 65 262-345 162-227 (434)
232 2pbi_B Guanine nucleotide-bind 26.2 3.2E+02 0.011 23.6 22.0 97 227-345 221-319 (354)
233 3dw8_B Serine/threonine-protei 25.8 1.8E+02 0.0063 25.8 7.7 70 261-344 188-261 (447)
234 2jp2_A Spred-2, sprouty-relate 25.5 1.1E+02 0.0036 23.0 4.8 40 120-166 21-65 (126)
235 1nr0_A Actin interacting prote 24.5 4.6E+02 0.016 24.8 21.3 63 261-341 459-522 (611)
236 2be1_A Serine/threonine-protei 24.4 2E+02 0.0068 25.6 7.3 110 109-237 10-132 (339)
237 1pgu_A Actin interacting prote 24.2 4.3E+02 0.015 24.5 23.1 184 119-345 142-332 (615)
238 2xzm_R RACK1; ribosome, transl 24.2 3.4E+02 0.012 23.2 19.0 68 261-342 266-341 (343)
239 4gq1_A NUP37; propeller, trans 24.0 3.7E+02 0.013 23.6 13.8 67 261-345 155-222 (393)
240 2vdu_B TRNA (guanine-N(7)-)-me 23.6 4E+02 0.014 23.9 23.4 203 111-345 163-397 (450)
241 4a2l_A BT_4663, two-component 22.3 5.7E+02 0.02 25.2 23.6 208 102-344 313-529 (795)
242 3nok_A Glutaminyl cyclase; bet 22.1 3.7E+02 0.013 22.9 15.7 115 207-351 103-220 (268)
243 3ow8_A WD repeat-containing pr 21.9 3.7E+02 0.013 22.8 22.7 174 117-339 142-319 (321)
244 2ece_A 462AA long hypothetical 21.6 4.9E+02 0.017 24.2 10.1 112 224-349 226-360 (462)
245 1xod_A Spred1; sprouty, EVH1, 21.3 98 0.0033 22.8 3.8 40 120-166 12-56 (118)
246 2w8x_A ION-channel modulator r 21.1 89 0.003 19.4 2.9 21 329-350 26-46 (72)
247 3kvp_A Uncharacterized protein 20.0 1.1E+02 0.0038 20.0 3.3 19 330-349 38-56 (72)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.39 E-value=2.4e-10 Score=103.82 Aligned_cols=236 Identities=9% Similarity=-0.059 Sum_probs=142.0
Q ss_pred eecccceEEeecC-----CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEE
Q 043816 105 IDTCNGLIALKNG-----ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIA 179 (378)
Q Consensus 105 ~~s~~Gll~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~ 179 (378)
....+|.|.+..+ .+.+.++||.|++|..+|+++..+.. ..... + .+ +++.+............++
T Consensus 51 ~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~--~iyv~GG~~~~~~~~~~~~ 121 (306)
T 3ii7_A 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS--LAACA--A---EG--KIYTSGGSEVGNSALYLFE 121 (306)
T ss_dssp EEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS--CEEEE--E---TT--EEEEECCBBTTBSCCCCEE
T ss_pred EEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc--eeEEE--E---CC--EEEEECCCCCCCcEeeeEE
Confidence 3345666655442 35799999999999999887754321 11111 1 22 4444443322233457899
Q ss_pred EEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCC---CCEEEEEECCCceEeeec-CCCCCCCCCCCee
Q 043816 180 VYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYN---GDLIVAFDLKSEEFFEVP-LPHLENRDSGNLM 255 (378)
Q Consensus 180 vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~---~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~ 255 (378)
+|+..+++|+.++ .+|.. .....++.++|.+|.+++....... ...+.+||+.+++|+.++ +|.... ..
T Consensus 122 ~~d~~~~~W~~~~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~ 194 (306)
T 3ii7_A 122 CYDTRTESWHTKP-SMLTQ-RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-----NH 194 (306)
T ss_dssp EEETTTTEEEEEC-CCSSC-CBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-----SC
T ss_pred EEeCCCCceEeCC-CCcCC-cceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-----cc
Confidence 9999999999998 66543 2223367889999999876432211 345999999999999984 554433 56
Q ss_pred EEEEeCCeEEEEEecCCC---CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCC
Q 043816 256 YMGNFSGCLYFSCFCDYP---EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK 331 (378)
Q Consensus 256 ~l~~~~G~L~l~~~~~~~---~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 331 (378)
.++..+|+|+++++.... ..+.++.++. .|..+..++.+. . .. ..++. ++.++++.-+ ......
T Consensus 195 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~-~~-~~~~~-~~~i~v~GG~------~~~~~~ 262 (306)
T 3ii7_A 195 GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG---V-TV-KCAAV-GSIVYVLAGF------QGVGRL 262 (306)
T ss_dssp EEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB---S-CC-EEEEE-TTEEEEEECB------CSSSBC
T ss_pred eEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc---c-ce-eEEEE-CCEEEEEeCc------CCCeee
Confidence 677889999999775431 2455555544 899886555411 1 11 12222 4444444410 000133
Q ss_pred cEEEEEECCCCeEEEEEEEeccCCCceeEEEEEecccc
Q 043816 332 WELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVS 369 (378)
Q Consensus 332 ~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~sl~~ 369 (378)
..+..||+++++|+ .+.-.........+....+...+
T Consensus 263 ~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~~~~ 299 (306)
T 3ii7_A 263 GHILEYNTETDKWV-ANSKVRAFPVTSCLICVVDTCGA 299 (306)
T ss_dssp CEEEEEETTTTEEE-EEEEEECCSCTTCEEEEEECC--
T ss_pred eeEEEEcCCCCeEE-eCCCcccccceeEEEEECCcccC
Confidence 57999999999999 87633222221445555554433
No 2
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.36 E-value=3.1e-10 Score=103.55 Aligned_cols=206 Identities=12% Similarity=0.051 Sum_probs=127.0
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEec--CCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFG--RGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~--~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
.++++||.|++|..+|+++..+.. ++.... .+ +++.+.... .+......+++|+..+++|+.++ .+|.
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~-----~~~~~~--~~--~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~ 137 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCL-----FGLGEA--LN--SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPY 137 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEES-----CEEEEE--TT--EEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSS
T ss_pred ceEEecCCCCeEEECCCCCcchhc-----eeEEEE--CC--EEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCC
Confidence 488999999999999988754321 111111 22 444443322 22335678999999999999998 6654
Q ss_pred cccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCC-c
Q 043816 198 YFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPE-P 275 (378)
Q Consensus 198 ~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~-~ 275 (378)
. .....++.++|.||.+++..........+.+||+.+++|+.+ ++|.... ....+..+|+|+++++..... .
T Consensus 138 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~ 211 (315)
T 4asc_A 138 V-VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-----LFGATVHDGRIIVAAGVTDTGLT 211 (315)
T ss_dssp C-CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEEEEECSSSEE
T ss_pred c-ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-----ceEEEEECCEEEEEeccCCCCcc
Confidence 3 222336789999999998743333345699999999999998 4554433 566778899999998865432 2
Q ss_pred EEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCC--ccc-cccCCcEEEEEECCCCeEEEEE
Q 043816 276 VDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDE--DED-EGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 276 i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~--~~~-~~~~~~~l~~yd~~t~~~~~~v 348 (378)
-++|.++- .|..+..++.+. .....++. ++.++++.-..... +.. .......+..||+++++|+ ++
T Consensus 212 ~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~-~~ 283 (315)
T 4asc_A 212 SSAEVYSITDNKWAPFEAFPQER-----SSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE-GV 283 (315)
T ss_dssp EEEEEEETTTTEEEEECCCSSCC-----BSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE-EE
T ss_pred ceEEEEECCCCeEEECCCCCCcc-----cceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhh-hh
Confidence 35666653 899986554321 11112222 44444443100000 000 0001245899999999999 87
No 3
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.35 E-value=2.9e-10 Score=103.93 Aligned_cols=205 Identities=11% Similarity=0.092 Sum_probs=125.9
Q ss_pred EEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEec-CCCCcccEEEEEEcCCCceEEeeccCCccc
Q 043816 121 IALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFG-RGKVEYTEIAVYSLKSNSSRRIRVDFPYYF 199 (378)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~-~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 199 (378)
++++||.|++|..+|+++..+.. ++.... .+ +++.+.... ........+++|+..+++|+.++ .+|...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~-----~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r 149 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCL-----FGLGEV--DD--KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKV 149 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCS-----CEEEEE--TT--EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCE
T ss_pred EEEEeCCCCcEEECCCCCccccc-----cceEEE--CC--EEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcc
Confidence 88999999999999988765321 111111 22 444444432 12334578999999999999998 666432
Q ss_pred cCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec-CCCCCCCCCCCeeEEEEeCCeEEEEEecCCC-CcEE
Q 043816 200 SHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP-LPHLENRDSGNLMYMGNFSGCLYFSCFCDYP-EPVD 277 (378)
Q Consensus 200 ~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~-~~i~ 277 (378)
....++.++|.||.+++..........+.+||+.+++|+.+. +|.... ....+..+|+|+++++.... ..-+
T Consensus 150 -~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~ 223 (318)
T 2woz_A 150 -YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-----MFGVAIHKGKIVIAGGVTEDGLSAS 223 (318)
T ss_dssp -ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEEEEEETTEEEEE
T ss_pred -cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-----cceEEEECCEEEEEcCcCCCCccce
Confidence 223367799999999876432222345999999999999984 554332 55677889999999876432 1234
Q ss_pred EEEEc--C-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccc---cccCCcEEEEEECCCCeEEEEE
Q 043816 278 IWIMK--E-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDED---EGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 278 iW~l~--~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~---~~~~~~~l~~yd~~t~~~~~~v 348 (378)
+|.++ . .|.++..++.+. ......+. ++.++++.-......+. .......++.||+++++|+ ++
T Consensus 224 ~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~-~~ 293 (318)
T 2woz_A 224 VEAFDLKTNKWEVMTEFPQER-----SSISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA-GM 293 (318)
T ss_dssp EEEEETTTCCEEECCCCSSCC-----BSCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE-EE
T ss_pred EEEEECCCCeEEECCCCCCcc-----cceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh-hh
Confidence 55554 3 899986555421 11112222 44444443100000000 0012356999999999999 87
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.29 E-value=2e-09 Score=97.41 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=133.1
Q ss_pred eecccceEEeecC------CceEEEEcCCCcc---eeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcc
Q 043816 105 IDTCNGLIALKNG------ENDIALWNPSTKK---HVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEY 175 (378)
Q Consensus 105 ~~s~~Gll~~~~~------~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~ 175 (378)
....+|.+.+..+ .+.++++||.|++ |..+++++..+.. ..... + .+ +++.+.... .....
T Consensus 58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~--~~~~~--~---~~--~lyv~GG~~-~~~~~ 127 (301)
T 2vpj_A 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL--AGATT--L---GD--MIYVSGGFD-GSRRH 127 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS--CEEEE--E---TT--EEEEECCBC-SSCBC
T ss_pred EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc--eeEEE--E---CC--EEEEEcccC-CCccc
Confidence 3344565554432 2479999999999 9999887765321 11111 1 12 444444322 12235
Q ss_pred cEEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCe
Q 043816 176 TEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNL 254 (378)
Q Consensus 176 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~ 254 (378)
..+++|+..+++|+.++ .+|.. .....++.++|.||.+++.... .....+.+||+.+++|+.+ ++|.... .
T Consensus 128 ~~~~~~d~~~~~W~~~~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~ 199 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLG-DMQTA-REGAGLVVASGVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVTPMATKRS-----G 199 (301)
T ss_dssp CEEEEEETTTTEEEEEE-ECSSC-CBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEEECCCSSCCB-----S
T ss_pred ceEEEEcCCCCeEEECC-CCCCC-cccceEEEECCEEEEECCCCCC-cccceEEEEeCCCCcEEeCCCCCcccc-----c
Confidence 68999999999999998 65532 2223367889999999875432 1234599999999999998 3554433 5
Q ss_pred eEEEEeCCeEEEEEecCC---CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccC
Q 043816 255 MYMGNFSGCLYFSCFCDY---PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN 330 (378)
Q Consensus 255 ~~l~~~~G~L~l~~~~~~---~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~ 330 (378)
..++..+|+|+++++... ...+.++.++. .|..+..++.+. . ... ..+. ++.++++.- ......
T Consensus 200 ~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r---~-~~~-~~~~-~~~i~v~GG------~~~~~~ 267 (301)
T 2vpj_A 200 AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR---C-YVG-ATVL-RGRLYAIAG------YDGNSL 267 (301)
T ss_dssp CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC---B-SCE-EEEE-TTEEEEECC------BCSSSB
T ss_pred ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc---c-cee-EEEE-CCEEEEEcC------cCCCcc
Confidence 567788999999987643 23555555555 899886554321 1 111 2222 444444431 000011
Q ss_pred CcEEEEEECCCCeEEEEEE
Q 043816 331 KWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 331 ~~~l~~yd~~t~~~~~~v~ 349 (378)
...+..||+++++|+ .+.
T Consensus 268 ~~~v~~yd~~~~~W~-~~~ 285 (301)
T 2vpj_A 268 LSSIECYDPIIDSWE-VVT 285 (301)
T ss_dssp EEEEEEEETTTTEEE-EEE
T ss_pred cccEEEEcCCCCeEE-EcC
Confidence 257899999999999 775
No 5
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.28 E-value=2.4e-09 Score=97.31 Aligned_cols=200 Identities=10% Similarity=0.025 Sum_probs=125.7
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
+.++++||.|++|..+|+++..+.. ..... + .+ +++.+..... ......+++|+..+++|+.++ .+|..
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~--~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~-~~p~~ 158 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNR--IGVGV--I---DG--HIYAVGGSHG-CIHHNSVERYEPERDEWHLVA-PMLTR 158 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBT--CEEEE--E---TT--EEEEECCEET-TEECCCEEEEETTTTEEEECC-CCSSC
T ss_pred ceEEEECCCCCeEeECCCCCcCccc--cEEEE--E---CC--EEEEEcCCCC-CcccccEEEECCCCCeEeECC-CCCcc
Confidence 4699999999999999988765321 11111 1 22 3444432221 123467999999999999998 55543
Q ss_pred ccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec-CCCCCCCCCCCeeEEEEeCCeEEEEEecCC---CC
Q 043816 199 FSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP-LPHLENRDSGNLMYMGNFSGCLYFSCFCDY---PE 274 (378)
Q Consensus 199 ~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~---~~ 274 (378)
.....++.++|.||.+++..... ....+..||+.+++|+.+. +|.... ....+..+|+|+++.+... ..
T Consensus 159 -r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~ 231 (308)
T 1zgk_A 159 -RIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIRS-----GAGVCVLHNCIYAAGGYDGQDQLN 231 (308)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSSSBCC
T ss_pred -ccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCCCCCccc-----cceEEEECCEEEEEeCCCCCCccc
Confidence 22233678899999998765321 1345999999999999883 454332 4566778999999987643 23
Q ss_pred cEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 275 PVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 275 ~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
.+.++.++. .|.++..++.+. . ... .++. ++.++++.- .........+..||+++++|+ ++.
T Consensus 232 ~v~~yd~~~~~W~~~~~~p~~r---~-~~~-~~~~-~~~i~v~GG------~~~~~~~~~v~~yd~~~~~W~-~~~ 294 (308)
T 1zgk_A 232 SVERYDVETETWTFVAPMKHRR---S-ALG-ITVH-QGRIYVLGG------YDGHTFLDSVECYDPDTDTWS-EVT 294 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCC---B-SCE-EEEE-TTEEEEECC------BCSSCBCCEEEEEETTTTEEE-EEE
T ss_pred eEEEEeCCCCcEEECCCCCCCc---c-ceE-EEEE-CCEEEEEcC------cCCCcccceEEEEcCCCCEEe-ecC
Confidence 455555555 899877554311 1 111 2222 444444431 000012457999999999999 875
No 6
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.27 E-value=2.3e-09 Score=97.01 Aligned_cols=214 Identities=12% Similarity=0.126 Sum_probs=132.1
Q ss_pred ecccceEEeecC------CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEE
Q 043816 106 DTCNGLIALKNG------ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIA 179 (378)
Q Consensus 106 ~s~~Gll~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~ 179 (378)
...+|.|.+..+ .+.+.++||.|++|..+|+++..+.. ..... + .+ +++.+..... ......++
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~--~iyv~GG~~~-~~~~~~~~ 127 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST--LGAAV--L---NG--LLYAVGGFDG-STGLSSVE 127 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--E---TT--EEEEEEEECS-SCEEEEEE
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc--eEEEE--E---CC--EEEEEcCCCC-CccCceEE
Confidence 344666655442 24699999999999999988765321 11111 1 22 3444443222 22456899
Q ss_pred EEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCC-CCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEE
Q 043816 180 VYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEG-YNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYM 257 (378)
Q Consensus 180 vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~-~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l 257 (378)
+|+..+++|+.++ .+|.. .....++.++|.||.+++..... .....+..||+.+++|+.+ ++|.... ...+
T Consensus 128 ~~d~~~~~W~~~~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~ 200 (302)
T 2xn4_A 128 AYNIKSNEWFHVA-PMNTR-RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-----GAGV 200 (302)
T ss_dssp EEETTTTEEEEEC-CCSSC-CBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-----SCEE
T ss_pred EEeCCCCeEeecC-CCCCc-ccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-----cccE
Confidence 9999999999998 66542 22233678899999998764321 1134599999999999998 4554432 5567
Q ss_pred EEeCCeEEEEEecCCC---CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcE
Q 043816 258 GNFSGCLYFSCFCDYP---EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 258 ~~~~G~L~l~~~~~~~---~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~ 333 (378)
+..+|+|+++++.... ..+.++..+. .|..+..++... . .. ..++. ++.++++.- .........
T Consensus 201 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r---~-~~-~~~~~-~~~i~v~GG------~~~~~~~~~ 268 (302)
T 2xn4_A 201 GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR---R-NA-GVCAV-NGLLYVVGG------DDGSCNLAS 268 (302)
T ss_dssp EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC---B-SC-EEEEE-TTEEEEECC------BCSSSBCCC
T ss_pred EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc---c-cC-eEEEE-CCEEEEECC------cCCCccccc
Confidence 7889999999876432 2444554444 899876554321 1 11 12222 444444431 000012346
Q ss_pred EEEEECCCCeEEEEEE
Q 043816 334 LDWYDLQNQRAAGQVT 349 (378)
Q Consensus 334 l~~yd~~t~~~~~~v~ 349 (378)
+..||+++++|+ .+.
T Consensus 269 v~~yd~~~~~W~-~~~ 283 (302)
T 2xn4_A 269 VEYYNPTTDKWT-VVS 283 (302)
T ss_dssp EEEEETTTTEEE-ECS
T ss_pred EEEEcCCCCeEE-ECC
Confidence 999999999999 764
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.25 E-value=1.5e-09 Score=98.49 Aligned_cols=201 Identities=12% Similarity=0.076 Sum_probs=127.2
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
.+.+.++||.+++|..+++++..+.. ..... + .+ +++.+.... ......+++|+..+++|+.+. .+|.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~--~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~-~~p~ 90 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRD--AACVF--W---DN--VVYILGGSQ--LFPIKRMDCYNVVKDSWYSKL-GPPT 90 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBS--CEEEE--E---TT--EEEEECCBS--SSBCCEEEEEETTTTEEEEEE-CCSS
T ss_pred CceEEEecCCCCCEecCCCCCcccce--eEEEE--E---CC--EEEEEeCCC--CCCcceEEEEeCCCCeEEECC-CCCc
Confidence 35799999999999999988765321 11111 1 22 344443322 234678999999999999998 6664
Q ss_pred cccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC----
Q 043816 198 YFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY---- 272 (378)
Q Consensus 198 ~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~---- 272 (378)
. .....++.++|.||.+++..........+..||+.+++|+.+ ++|.... ....+..+|+|+++++...
T Consensus 91 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 91 P-RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC-----SHGMVEANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp C-CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCEESCTTT
T ss_pred c-ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc-----eeEEEEECCEEEEECCCCCCCCc
Confidence 2 222336788999999988653333345699999999999998 4554433 5567778999999987532
Q ss_pred ---CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 273 ---PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 273 ---~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
...+.++..+. .|..+..++.+. ......+. ++ .|++.- ..........+..||+++++|+ ++
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~-~~-~i~v~G-----G~~~~~~~~~~~~yd~~~~~W~-~~ 231 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEAR-----KNHGLVFV-KD-KIFAVG-----GQNGLGGLDNVEYYDIKLNEWK-MV 231 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCC-----BSCEEEEE-TT-EEEEEC-----CEETTEEBCCEEEEETTTTEEE-EC
T ss_pred ccccceEEEeCCCCCeEEECCCccchh-----hcceEEEE-CC-EEEEEe-----CCCCCCCCceEEEeeCCCCcEE-EC
Confidence 23455555555 899886544311 11112222 44 444441 0000011356999999999999 76
Q ss_pred E
Q 043816 349 T 349 (378)
Q Consensus 349 ~ 349 (378)
.
T Consensus 232 ~ 232 (306)
T 3ii7_A 232 S 232 (306)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.19 E-value=6.6e-09 Score=93.94 Aligned_cols=223 Identities=12% Similarity=0.102 Sum_probs=134.3
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc---eEEeeccC
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS---SRRIRVDF 195 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~---W~~~~~~~ 195 (378)
+.++++||.|++|..+|+.+..+.. .... .. .+ +++.+.... .......+++|+..+++ |+.+. .+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~--~~---~~--~l~v~GG~~-~~~~~~~~~~~d~~~~~~~~W~~~~-~~ 99 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRY--VASV--SL---HD--RIYVIGGYD-GRSRLSSVECLDYTADEDGVWYSVA-PM 99 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS--CEEE--EE---TT--EEEEECCBC-SSCBCCCEEEEETTCCTTCCCEEEC-CC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhcc--ccEE--EE---CC--EEEEEcCCC-CCccCceEEEEECCCCCCCeeEECC-CC
Confidence 4689999999999999977754321 1111 11 22 444443322 22245679999999999 99998 66
Q ss_pred CccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCCC-
Q 043816 196 PYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDYP- 273 (378)
Q Consensus 196 p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~- 273 (378)
|.. .....++.++|.+|.+++.... .....+..||+.+++|+.+ ++|.... ....+..+|+|+++++....
T Consensus 100 p~~-r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 100 NVR-RGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGDMQTARE-----GAGLVVASGVIYCLGGYDGLN 172 (301)
T ss_dssp SSC-CBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCCB-----SCEEEEETTEEEEECCBCSSC
T ss_pred CCC-ccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECCCCCCCcc-----cceEEEECCEEEEECCCCCCc
Confidence 542 2223367889999999876532 1234699999999999988 4554433 55667789999999875432
Q ss_pred --CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEE
Q 043816 274 --EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 274 --~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
..+.++..+. .|.++..++.+. ......+. ++ .|++.- ..........+..||+++++|+ ++.-
T Consensus 173 ~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~~~~~~-~~-~i~v~G-----G~~~~~~~~~v~~yd~~~~~W~-~~~~ 239 (301)
T 2vpj_A 173 ILNSVEKYDPHTGHWTNVTPMATKR-----SGAGVALL-ND-HIYVVG-----GFDGTAHLSSVEAYNIRTDSWT-TVTS 239 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCC-----BSCEEEEE-TT-EEEEEC-----CBCSSSBCCCEEEEETTTTEEE-EECC
T ss_pred ccceEEEEeCCCCcEEeCCCCCccc-----ccceEEEE-CC-EEEEEe-----CCCCCcccceEEEEeCCCCcEE-ECCC
Confidence 3455555445 899885444311 11112222 44 444441 0000011357999999999999 7752
Q ss_pred eccCCCceeEEEEEeccccCCC
Q 043816 351 HGVPQGCRYTMIYVDSLVSLAA 372 (378)
Q Consensus 351 ~~~~~~~~~~~~y~~sl~~~~~ 372 (378)
.........+..+...|+-+.+
T Consensus 240 ~p~~r~~~~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 240 MTTPRCYVGATVLRGRLYAIAG 261 (301)
T ss_dssp CSSCCBSCEEEEETTEEEEECC
T ss_pred CCCcccceeEEEECCEEEEEcC
Confidence 2222211344444444544444
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.13 E-value=7.1e-09 Score=94.48 Aligned_cols=205 Identities=9% Similarity=0.007 Sum_probs=121.0
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEec-CC--CCcccEEEEEEcCCCceEEeeccC
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFG-RG--KVEYTEIAVYSLKSNSSRRIRVDF 195 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~-~~--~~~~~~~~vyss~t~~W~~~~~~~ 195 (378)
..+.++||.|++|.. ++.+.... ...+ +.....+...|++-.... .. ......+++|+..+++|+.++ .+
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~---r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~ 85 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVP---KNHV--SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP-PL 85 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSC---SSEE--EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC-CB
T ss_pred CceEEECCCCCeEec-CCCCCCCC---ccce--EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC-CC
Confidence 579999999999986 33332111 1111 111223433333332211 11 112345899999999999988 65
Q ss_pred CccccCCCCceEECCeeEEEEEeCC--CCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC
Q 043816 196 PYYFSHPRDGTFARGHVHWLVLNEP--EGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY 272 (378)
Q Consensus 196 p~~~~~~~~~v~~~G~lYwl~~~~~--~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~ 272 (378)
|.. ......+.++|.+|.+++... .......+..||+.+++|+.+ ++|.... ....+..+|+|+++++...
T Consensus 86 p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 86 PSP-RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY-----GHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp SSC-EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCT
T ss_pred Ccc-hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc-----ceeEEEECCEEEEEeCCCC
Confidence 532 222336788999999998531 122334599999999999988 4555433 5667779999999987622
Q ss_pred ----CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEE
Q 043816 273 ----PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQ 347 (378)
Q Consensus 273 ----~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~ 347 (378)
...+.++..+. .|.++..++.+. .....++. ++.++++.-. ........+..||+++++|+ +
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~-~~~iyv~GG~------~~~~~~~~~~~yd~~~~~W~-~ 226 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTAR-----SLFGATVH-DGRIIVAAGV------TDTGLTSSAEVYSITDNKWA-P 226 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCC-----BSCEEEEE-TTEEEEEEEE------CSSSEEEEEEEEETTTTEEE-E
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCch-----hceEEEEE-CCEEEEEecc------CCCCccceEEEEECCCCeEE-E
Confidence 12444444444 899876554311 11112222 4444444310 00011247999999999999 7
Q ss_pred EE
Q 043816 348 VT 349 (378)
Q Consensus 348 v~ 349 (378)
+.
T Consensus 227 ~~ 228 (315)
T 4asc_A 227 FE 228 (315)
T ss_dssp EC
T ss_pred CC
Confidence 65
No 10
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.11 E-value=6.4e-09 Score=94.49 Aligned_cols=224 Identities=9% Similarity=0.033 Sum_probs=132.8
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEec---CCCCcccEEEEEEcCCCceEEeeccC
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFG---RGKVEYTEIAVYSLKSNSSRRIRVDF 195 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~---~~~~~~~~~~vyss~t~~W~~~~~~~ 195 (378)
+.+.++||.|++|..+++.+..+.. .... .. .+ +|+.+.... ........+++|+..+++|+.++ .+
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~---~~--~~--~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~ 108 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSG--LAGC---VV--GG--LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-PM 108 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS--CEEE---EE--TT--EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-CC
T ss_pred ceEEEEcCCCCeEeECCCCCccccc--ceEE---EE--CC--EEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-CC
Confidence 4689999999999999887765321 1111 11 22 333332211 11123467899999999999998 65
Q ss_pred CccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC--
Q 043816 196 PYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY-- 272 (378)
Q Consensus 196 p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~-- 272 (378)
|.. ......+.++|.||.+++.... .....+..||+.+++|+.+ ++|.... ....+..+|+|+++++...
T Consensus 109 p~~-r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~ 181 (308)
T 1zgk_A 109 SVP-RNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRI-----GVGVAVLNRLLYAVGGFDGTN 181 (308)
T ss_dssp SSC-CBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSSC
T ss_pred CcC-ccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCcccc-----ceEEEEECCEEEEEeCCCCCC
Confidence 542 2223367889999999875432 1123499999999999998 4554433 5566777999999987643
Q ss_pred -CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEE
Q 043816 273 -PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 273 -~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
...+.++.++. .|..+..++.+. ......+. ++ .|++.-. .........+..||+++++|+ ++.-
T Consensus 182 ~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~-~~-~iyv~GG-----~~~~~~~~~v~~yd~~~~~W~-~~~~ 248 (308)
T 1zgk_A 182 RLNSAECYYPERNEWRMITAMNTIR-----SGAGVCVL-HN-CIYAAGG-----YDGQDQLNSVERYDVETETWT-FVAP 248 (308)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCC-----BSCEEEEE-TT-EEEEECC-----BCSSSBCCCEEEEETTTTEEE-ECCC
T ss_pred cCceEEEEeCCCCeEeeCCCCCCcc-----ccceEEEE-CC-EEEEEeC-----CCCCCccceEEEEeCCCCcEE-ECCC
Confidence 23455555555 899876544311 11112222 44 4554410 000011367999999999999 7652
Q ss_pred eccCCCceeEEEEEeccccCCC
Q 043816 351 HGVPQGCRYTMIYVDSLVSLAA 372 (378)
Q Consensus 351 ~~~~~~~~~~~~y~~sl~~~~~ 372 (378)
.........+..+...|+-+.+
T Consensus 249 ~p~~r~~~~~~~~~~~i~v~GG 270 (308)
T 1zgk_A 249 MKHRRSALGITVHQGRIYVLGG 270 (308)
T ss_dssp CSSCCBSCEEEEETTEEEEECC
T ss_pred CCCCccceEEEEECCEEEEEcC
Confidence 2222211344444444544444
No 11
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.11 E-value=9e-09 Score=93.13 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=133.6
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
+.+.++||.+++|..+++++..+.. .... .. .+ +|+.+.... .......+++|+..+++|+.++ .+|..
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~---~~--~~--~lyv~GG~~-~~~~~~~~~~~d~~~~~W~~~~-~~p~~ 98 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCR--AGMV---YM--AG--LVFAVGGFN-GSLRVRTVDSYDPVKDQWTSVA-NMRDR 98 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS--CEEE---EE--TT--EEEEESCBC-SSSBCCCEEEEETTTTEEEEEC-CCSSC
T ss_pred CcEEEEcCcCCcEeEcccCCccccc--ceEE---EE--CC--EEEEEeCcC-CCccccceEEECCCCCceeeCC-CCCcc
Confidence 4588999999999999877764321 1111 11 22 344443222 1223567899999999999998 66543
Q ss_pred ccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC-----
Q 043816 199 FSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY----- 272 (378)
Q Consensus 199 ~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~----- 272 (378)
.....++.++|.+|.+++.... .....+..||+.+++|+.+ ++|.... ....+..+|+|+++++...
T Consensus 99 -r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 99 -RSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRRS-----SVGVGVVGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp -CBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCEETTTTEE
T ss_pred -ccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCccc-----CceEEEECCEEEEEeCCCCCCCcc
Confidence 2223367889999999986532 1224589999999999998 4554332 5567778999999987532
Q ss_pred CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 273 PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 273 ~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
...+.++..+. .|..+..++.+. .....++. ++ .|++.- ..........+..||+++++|+ ++.-.
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~-~~-~iyv~G-----G~~~~~~~~~~~~yd~~~~~W~-~~~~~ 238 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRR-----SGAGVGVL-NN-LLYAVG-----GHDGPLVRKSVEVYDPTTNAWR-QVADM 238 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCC-----BSCEEEEE-TT-EEEEEC-----CBSSSSBCCCEEEEETTTTEEE-EECCC
T ss_pred ccEEEEEeCCCCcEEECCCCcccc-----ccccEEEE-CC-EEEEEC-----CCCCCcccceEEEEeCCCCCEe-eCCCC
Confidence 22455555555 899986554311 11112222 44 444441 0000011357999999999999 76522
Q ss_pred ccCCCceeEEEEEeccccCCC
Q 043816 352 GVPQGCRYTMIYVDSLVSLAA 372 (378)
Q Consensus 352 ~~~~~~~~~~~y~~sl~~~~~ 372 (378)
........+..+...|+-+.+
T Consensus 239 ~~~r~~~~~~~~~~~i~v~GG 259 (302)
T 2xn4_A 239 NMCRRNAGVCAVNGLLYVVGG 259 (302)
T ss_dssp SSCCBSCEEEEETTEEEEECC
T ss_pred CCccccCeEEEECCEEEEECC
Confidence 222211344444444554444
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.11 E-value=4.1e-09 Score=97.75 Aligned_cols=172 Identities=11% Similarity=0.023 Sum_probs=106.3
Q ss_pred cccceEEeecC--CceEEEEcCC--CcceeecCCCC-CCCCCCCceeeEEeeeCCCCCEEEEEEEEe-c--C-CCCcccE
Q 043816 107 TCNGLIALKNG--ENDIALWNPS--TKKHVLLPKFW-SDFDDYADLVDGFGYDAVSDDYKVVRLIQF-G--R-GKVEYTE 177 (378)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~-~--~-~~~~~~~ 177 (378)
..+|.|.+..+ .+.++++||. +++|..+++++ ..+. ...... + .+ +|+.+... . . .......
T Consensus 17 ~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~--~~~~~~--~---~~--~lyv~GG~~~~~~~~~~~~~~ 87 (357)
T 2uvk_A 17 IDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRD--QATSAF--I---DG--NLYVFGGIGKNSEGLTQVFND 87 (357)
T ss_dssp EETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCB--SCEEEE--E---TT--EEEEECCEEECTTSCEEECCC
T ss_pred EECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCc--cceEEE--E---CC--EEEEEcCCCCCCCccceeecc
Confidence 33666655442 4579999998 59999999877 3322 111111 1 23 33333322 1 1 1123567
Q ss_pred EEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCC---------------------------------CC
Q 043816 178 IAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEG---------------------------------YN 224 (378)
Q Consensus 178 ~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~---------------------------------~~ 224 (378)
+++|+..+++|+.+. .++........++.++|.||.+++..... ..
T Consensus 88 v~~yd~~~~~W~~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 2uvk_A 88 VHKYNPKTNSWVKLM-SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF 166 (357)
T ss_dssp EEEEETTTTEEEECS-CCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCC
T ss_pred EEEEeCCCCcEEECC-CCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCC
Confidence 999999999999998 55511122223577999999998753210 01
Q ss_pred CCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCCeEEEEEecCC----CCcEEEEEE--cC-ceeeeEEEe
Q 043816 225 GDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSGCLYFSCFCDY----PEPVDIWIM--KE-SWTKVFSFA 292 (378)
Q Consensus 225 ~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~----~~~i~iW~l--~~-~W~~~~~i~ 292 (378)
...+.+||+.+++|+.+ ++|..... ...++..+|+|+++++... ...+.++.+ +. .|..+..++
T Consensus 167 ~~~v~~yd~~~~~W~~~~~~p~~~~~----~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 167 NKFLLSFDPSTQQWSYAGESPWYGTA----GAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS 238 (357)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCCCB----SCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSS
T ss_pred cccEEEEeCCCCcEEECCCCCCCCcc----cccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCC
Confidence 24699999999999998 46644331 3677888999999976432 123444444 23 899886654
No 13
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.07 E-value=2.4e-11 Score=79.71 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=38.9
Q ss_pred CCCCcHHHHHHHHhcCChhchheeeeccccchhhccChhHHH
Q 043816 1 MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVK 42 (378)
Q Consensus 1 i~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~ 42 (378)
+..||+|++.+||++||++++.++++|||+|+.++.++.|.+
T Consensus 9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 468999999999999999999999999999999999998754
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.04 E-value=2.7e-07 Score=87.83 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=42.1
Q ss_pred CCCCcHHHHHHHHhcCChhchheeeeccccchhhccChhHHHHHhh
Q 043816 1 MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLN 46 (378)
Q Consensus 1 i~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~~~~~ 46 (378)
++.||+|++.+||+.|++++|.++++|||+|+.++.++.+.+....
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 4689999999999999999999999999999999999988876554
No 15
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.02 E-value=7.5e-11 Score=104.95 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=45.3
Q ss_pred CCCCcHHHHHHHHhcCChhchh-eeeeccccchhhccChhHHHHHhhcc
Q 043816 1 MERLPRDLNMNILSRLSVKCLL-RLRCVSKPFCSLIDSQKFVKTHLNRS 48 (378)
Q Consensus 1 i~~LP~Dll~eIL~rLp~~sl~-r~~~VcK~W~~~i~~p~F~~~~~~~~ 48 (378)
|+.||+|||.+||+|||+++|+ ||++|||+|++++++|.|.+.+..+.
T Consensus 51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 5689999999999999999999 99999999999999999999987765
No 16
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.01 E-value=3.4e-07 Score=87.45 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHhcCChhchheeeeccccchhhccC-hhHHHHH
Q 043816 2 ERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDS-QKFVKTH 44 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~-p~F~~~~ 44 (378)
+.||+|++.+||+.||+++|.+++.|||+|+.++.+ +...+.+
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 469999999999999999999999999999999998 6655543
No 17
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.97 E-value=1.4e-07 Score=87.30 Aligned_cols=206 Identities=13% Similarity=0.128 Sum_probs=117.6
Q ss_pred ceEEEEcCCCcceeecCCCC-CCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCC-------------------------
Q 043816 119 NDIALWNPSTKKHVLLPKFW-SDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGK------------------------- 172 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~------------------------- 172 (378)
+.+.++||.|++|..+++++ ..+ .... ...+ .+ +++.+.......
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r---~~~~-~~~~---~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGM---AGHV-TFVH---NG--KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY 156 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCC---SSEE-EEEE---TT--EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccEEEEeCCCCcEEECCCCCCccc---ccce-EEEE---CC--EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence 46999999999999998876 221 1111 1111 22 444444321100
Q ss_pred --------CcccEEEEEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEEC--CCceEeee-
Q 043816 173 --------VEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDL--KSEEFFEV- 241 (378)
Q Consensus 173 --------~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~--~~~~~~~i- 241 (378)
.....+++|+..+++|+.+. .+|.........+.++|.||.+++..........+..||+ .+++|+.+
T Consensus 157 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~ 235 (357)
T 2uvk_A 157 FDKKAEDYFFNKFLLSFDPSTQQWSYAG-ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA 235 (357)
T ss_dssp HSSCGGGGCCCCEEEEEETTTTEEEEEE-ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECC
T ss_pred ccccccccCCcccEEEEeCCCCcEEECC-CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecC
Confidence 01368999999999999998 6664332223477889999999865321111234778876 89999987
Q ss_pred cCCCCCCCCCCCeeEEEEeCCeEEEEEecCCC--------------------CcEEEEEEcC-ceeeeEEEecCccccce
Q 043816 242 PLPHLENRDSGNLMYMGNFSGCLYFSCFCDYP--------------------EPVDIWIMKE-SWTKVFSFAGGVFGIFT 300 (378)
Q Consensus 242 ~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~--------------------~~i~iW~l~~-~W~~~~~i~~~~~~~~~ 300 (378)
++|..... . ...++..+|+|+++++.... ..+.++.++. .|.++..++.+. ..
T Consensus 236 ~~~~~~~~--~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~ 309 (357)
T 2uvk_A 236 PVSSPDGV--A-GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR---AY 309 (357)
T ss_dssp CSSTTTCC--B-SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC---BS
T ss_pred CCCCCccc--c-cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc---cc
Confidence 34433321 1 44578889999999874211 1344444545 999987666521 11
Q ss_pred eeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 301 YAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 301 ~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
.. . +.-++.++++.=+ +. .+.....++.+++++++|. +..
T Consensus 310 -~~-~-~~~~~~i~v~GG~----~~-~~~~~~~v~~l~~~~~~~~-~~~ 349 (357)
T 2uvk_A 310 -GV-S-LPWNNSLLIIGGE----TA-GGKAVTDSVLITVKDNKVT-VQN 349 (357)
T ss_dssp -SE-E-EEETTEEEEEEEE----CG-GGCEEEEEEEEEC-CCSCE-EEC
T ss_pred -ce-e-EEeCCEEEEEeee----CC-CCCEeeeEEEEEEcCcEeE-eee
Confidence 11 1 2235555555510 00 0001246888999999998 543
No 18
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.96 E-value=6e-08 Score=88.42 Aligned_cols=234 Identities=13% Similarity=0.031 Sum_probs=129.8
Q ss_pred ceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEec---CCC--CcccEEEEEEcC
Q 043816 110 GLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFG---RGK--VEYTEIAVYSLK 184 (378)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~---~~~--~~~~~~~vyss~ 184 (378)
+.+++-.+ ....++||.|++|...|.+.... . ... +.....+. |+.+.... ... .....+++|+..
T Consensus 16 ~~i~~~GG-~~~~~yd~~~~~W~~~~~~~~~~---r-~~~--~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~ 86 (318)
T 2woz_A 16 DLILLVND-TAAVAYDPMENECYLTALAEQIP---R-NHS--SIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNV 86 (318)
T ss_dssp EEEEEECS-SEEEEEETTTTEEEEEEECTTSC---S-SEE--EEECSSSC--EEEEESSCC-------CCCBEEEEEETT
T ss_pred chhhhccc-cceEEECCCCCceecccCCccCC---c-cce--EEEEECCE--EEEECCcccCccccCCCccccEEEEeCC
Confidence 34433333 34789999999999843221111 1 111 11112332 33333211 011 112348999999
Q ss_pred CCceEEeeccCCccccCCCCceEECCeeEEEEEeCC-CCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEeCC
Q 043816 185 SNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEP-EGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNFSG 262 (378)
Q Consensus 185 t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~-~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~~G 262 (378)
+++|+.++ .+|..- .....+.++|.||.+++... .......+..||+.+++|+.+ ++|.... ....+..+|
T Consensus 87 ~~~W~~~~-~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~ 159 (318)
T 2woz_A 87 SSEWVGLP-PLPSAR-CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY-----GHNVISHNG 159 (318)
T ss_dssp TTEEEECS-CBSSCB-CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE-----SCEEEEETT
T ss_pred CCcEEECC-CCCccc-cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc-----ccEEEEECC
Confidence 99999988 555432 22336788999999998752 112234589999999999998 4554433 455667899
Q ss_pred eEEEEEecCC----CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEE
Q 043816 263 CLYFSCFCDY----PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWY 337 (378)
Q Consensus 263 ~L~l~~~~~~----~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~y 337 (378)
+|+++++... ...+.++..+. .|..+..++.+. .....++. ++.++++.- .........+..|
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~-~~~iyv~GG------~~~~~~~~~~~~y 227 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-----SMFGVAIH-KGKIVIAGG------VTEDGLSASVEAF 227 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-----BSCEEEEE-TTEEEEEEE------EETTEEEEEEEEE
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-----ccceEEEE-CCEEEEEcC------cCCCCccceEEEE
Confidence 9999987521 22444444444 899886544311 11112222 444444431 0000112468899
Q ss_pred ECCCCeEEEEEEEeccCCCceeEEEEEeccccCCC
Q 043816 338 DLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAA 372 (378)
Q Consensus 338 d~~t~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~ 372 (378)
|+++++|+ ++.-.........+..+...|+-+.+
T Consensus 228 d~~~~~W~-~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 228 DLKTNKWE-VMTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp ETTTCCEE-ECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred ECCCCeEE-ECCCCCCcccceEEEEECCEEEEECC
Confidence 99999999 76522222211344555555555544
No 19
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.92 E-value=8.2e-08 Score=97.10 Aligned_cols=223 Identities=10% Similarity=0.008 Sum_probs=127.4
Q ss_pred ccceEEeecC-----CceEEEEcCCCcceeecC-CCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEE
Q 043816 108 CNGLIALKNG-----ENDIALWNPSTKKHVLLP-KFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVY 181 (378)
Q Consensus 108 ~~Gll~~~~~-----~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vy 181 (378)
.+|.|.+..+ .+.++++||.|++|..++ +.+..........++.......+ +++.+............+++|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~--~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN--QLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT--EEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC--EEEEEcCCCCCCCccccEEEE
Confidence 4555555443 246999999999999998 52210000011112222221022 344444332222234679999
Q ss_pred EcCCCceEEeeccCCccccCCCCceEE-CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec----CCCCCCCCCCCeeE
Q 043816 182 SLKSNSSRRIRVDFPYYFSHPRDGTFA-RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP----LPHLENRDSGNLMY 256 (378)
Q Consensus 182 ss~t~~W~~~~~~~p~~~~~~~~~v~~-~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~ 256 (378)
+..+++|+.++ .+|.. .....++.+ +|.||.+++..... .+.+||+.+++|+.+. +|.... ...
T Consensus 474 d~~t~~W~~~~-~~p~~-R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~-----~~~ 542 (695)
T 2zwa_A 474 DMKTREWSMIK-SLSHT-RFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSL-----VSA 542 (695)
T ss_dssp ETTTTEEEECC-CCSBC-CBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCC-----BSC
T ss_pred eCCCCcEEECC-CCCCC-cccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCccc-----cee
Confidence 99999999998 66642 222235554 99999998765322 5999999999999985 444433 333
Q ss_pred EEEeC---CeEEEEEecCC-----CCcEEEEEEcC-c------eeeeEEEecCccccceeeEEEEEeecCCEEEEeeccC
Q 043816 257 MGNFS---GCLYFSCFCDY-----PEPVDIWIMKE-S------WTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLY 321 (378)
Q Consensus 257 l~~~~---G~L~l~~~~~~-----~~~i~iW~l~~-~------W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~ 321 (378)
.+..+ |+|+++++... ...+.+|.++. . |..+..++. .+.. .....+..++.++++.-..
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~--~~R~--~~~~~~~~~~~iyv~GG~~- 617 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL--FQRY--GSQIKYITPRKLLIVGGTS- 617 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG--GCCB--SCEEEEEETTEEEEECCBC-
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC--CCcc--cceEEEeCCCEEEEECCcc-
Confidence 33434 89999987632 23566666666 6 777766432 1111 1122333334444444100
Q ss_pred CCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 322 DEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 322 ~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
.+ ........+..||+++++|+ .+.+.
T Consensus 618 -~~-~~~~~~~~v~~yd~~t~~W~-~~~~p 644 (695)
T 2zwa_A 618 -PS-GLFDRTNSIISLDPLSETLT-SIPIS 644 (695)
T ss_dssp -SS-CCCCTTTSEEEEETTTTEEE-ECCCC
T ss_pred -CC-CCCCCCCeEEEEECCCCeEE-Eeecc
Confidence 00 00012457999999999999 76543
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.77 E-value=4.4e-07 Score=86.23 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=38.7
Q ss_pred CCCcHH----HHHHHHhcCChhchheeeeccccchhhccChhHHHHH
Q 043816 2 ERLPRD----LNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTH 44 (378)
Q Consensus 2 ~~LP~D----ll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~~~ 44 (378)
+.||+| |+..||+.|++++|.++.+|||+|+.++.++.+.+..
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 459999 9999999999999999999999999999887776644
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.46 E-value=1.4e-06 Score=87.59 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=70.7
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccc
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYF 199 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 199 (378)
.+.++||.|++|..+++++..+.. ...+..+.. .+ +++.+... ....+++|+..++.|..+. .+|..
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~---~~~~~~~~~-~g--~lyv~GG~-----~~~~v~~yd~~t~~W~~~~-~~~~~- 286 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDM---FCPGISMDG-NG--QIVVTGGN-----DAKKTSLYDSSSDSWIPGP-DMQVA- 286 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCC---SSCEEEECT-TS--CEEEECSS-----STTCEEEEEGGGTEEEECC-CCSSC-
T ss_pred EEEEEeCCCCcEEeCcccCCCCCC---ccccccCCC-CC--CEEEeCCC-----CCCceEEecCcCCceeECC-CCCcc-
Confidence 588999999999999876544321 111222211 12 34444321 1237999999999999988 55542
Q ss_pred cCCCCceEE-CCeeEEEEEeCCCCCCCCEEEEEECCCceEeee
Q 043816 200 SHPRDGTFA-RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV 241 (378)
Q Consensus 200 ~~~~~~v~~-~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i 241 (378)
.....++.+ +|++|.+++..........+..||+.+++|+.+
T Consensus 287 R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 287 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 222235667 999999998433222334589999999999986
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.28 E-value=2.4e-05 Score=79.03 Aligned_cols=188 Identities=9% Similarity=-0.034 Sum_probs=110.6
Q ss_pred cccEEEEEEcCCCceEEeeccCC---ccc-cCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCC
Q 043816 174 EYTEIAVYSLKSNSSRRIRVDFP---YYF-SHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHL 246 (378)
Q Consensus 174 ~~~~~~vyss~t~~W~~~~~~~p---~~~-~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~ 246 (378)
....+++|+..+++|+.+...+| ... .....++.+ +|.+|.+++..........+..||+.+++|+.+ ++|..
T Consensus 410 ~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~ 489 (695)
T 2zwa_A 410 RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT 489 (695)
T ss_dssp BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC
T ss_pred CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC
Confidence 45678999999999999873222 111 122336778 999999998754221234589999999999998 45544
Q ss_pred CCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCC
Q 043816 247 ENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYD 322 (378)
Q Consensus 247 ~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~ 322 (378)
.. ....+.. +|+|+++++..... ++|.++- .|..+........+.. ....+.+..+++.|++.-..
T Consensus 490 R~-----~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~a~v~~~~~~~iyv~GG~-- 559 (695)
T 2zwa_A 490 RF-----RHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSL-VSAGLEFDPVSKQGIILGGG-- 559 (695)
T ss_dssp CB-----SCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCC-BSCEEEEETTTTEEEEECCB--
T ss_pred cc-----cceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCccc-ceeEEEEeCCCCEEEEECCc--
Confidence 33 4556664 99999998876543 5566543 8998765221000111 11223333332445554110
Q ss_pred CccccccCCcEEEEEECCCCe------EEEEEEEe-ccCCCceeEEEEE-eccccCCCC
Q 043816 323 EDEDEGINKWELDWYDLQNQR------AAGQVTVH-GVPQGCRYTMIYV-DSLVSLAAY 373 (378)
Q Consensus 323 ~~~~~~~~~~~l~~yd~~t~~------~~~~v~~~-~~~~~~~~~~~y~-~sl~~~~~~ 373 (378)
+.........+..||+++++ |+ ++.-. ........+..+. ..|+-+.+.
T Consensus 560 -~~~~~~~~~~v~~yd~~~~~w~~~~~W~-~~~~~p~~~R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 560 -FMDQTTVSDKAIIFKYDAENATEPITVI-KKLQHPLFQRYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp -CTTSSCBCCEEEEEEECTTCSSCCEEEE-EEEECGGGCCBSCEEEEEETTEEEEECCB
T ss_pred -CCCCCeeeCcEEEEEccCCccccceEEE-EcCCCCCCCcccceEEEeCCCEEEEECCc
Confidence 00000123579999999999 88 76542 2222224555666 566666553
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.17 E-value=1.4e-05 Score=80.15 Aligned_cols=193 Identities=9% Similarity=0.041 Sum_probs=114.8
Q ss_pred EEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCC-----CCcccEEEEEEcCCCceEEeeccC
Q 043816 121 IALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRG-----KVEYTEIAVYSLKSNSSRRIRVDF 195 (378)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~-----~~~~~~~~vyss~t~~W~~~~~~~ 195 (378)
+...+|.+++|..+++.|... ....+.+..+ +|+.+...... ......+++|+..+++|+.+. .+
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~~-------~~~av~~~~g--~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~ 237 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIVP-------AAAAIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VT 237 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSCC-------SEEEEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EE
T ss_pred cccCCCCCCeeeeeccCCCCc-------eeEEEEecCC--EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc-cc
Confidence 444689999999887776421 1222233233 45555432211 112347899999999999887 44
Q ss_pred CccccCCCC--ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEe-CCeEEEEEec-
Q 043816 196 PYYFSHPRD--GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNF-SGCLYFSCFC- 270 (378)
Q Consensus 196 p~~~~~~~~--~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~- 270 (378)
|........ ++..+|.||..++.... .+..||+.+++|..+ ++|.... ....+.+ +|+++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~~R~-----~~s~~~~~dg~iyv~GG~~ 307 (656)
T 1k3i_A 238 VTKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARG-----YQSSATMSDGRVFTIGGSW 307 (656)
T ss_dssp ECSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSSCCS-----SCEEEECTTSCEEEECCCC
T ss_pred CCCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCcccc-----ccceEEecCCeEEEEeCcc
Confidence 433222222 23468999999875432 499999999999987 3444332 5667777 9999999883
Q ss_pred C---CCCcEEEEEEcC-ceeeeEEEec-Ccc-ccc-----eeeEEEEEe-ecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 271 D---YPEPVDIWIMKE-SWTKVFSFAG-GVF-GIF-----TYAKALAYS-KSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 271 ~---~~~~i~iW~l~~-~W~~~~~i~~-~~~-~~~-----~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
. ....+++|..+. .|..+..... +.. ... ....+..+. .+|. ++.. .....+..||
T Consensus 308 ~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~-~~~~-----------~~~~~v~~yd 375 (656)
T 1k3i_A 308 SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQA-----------GPSTAMNWYY 375 (656)
T ss_dssp CSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEEC-----------CSSSEEEEEE
T ss_pred cCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCc-EEEe-----------cCccceeeee
Confidence 2 124677777766 8987632211 000 000 000111122 2333 3333 2456899999
Q ss_pred CCCCeEE
Q 043816 339 LQNQRAA 345 (378)
Q Consensus 339 ~~t~~~~ 345 (378)
++++.|.
T Consensus 376 ~~~~~w~ 382 (656)
T 1k3i_A 376 TSGSGDV 382 (656)
T ss_dssp CSTTCEE
T ss_pred cCCccee
Confidence 9999987
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.02 E-value=7.6e-07 Score=78.33 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHhcCChhchheeeeccccchhhccChhHHHHHhhcc
Q 043816 2 ERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRS 48 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F~~~~~~~~ 48 (378)
+.||+|++..||+.|++++|+|+.+|||+||.+..++...+.+..+.
T Consensus 6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 46999999999999999999999999999999999999999887775
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.44 E-value=2.6e-05 Score=71.16 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHHhcCChhchheeeeccccchhhccChhH
Q 043816 1 MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKF 40 (378)
Q Consensus 1 i~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F 40 (378)
++.||+|++.+||++|+.+++.+++.|||+|+.++.+|..
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 4689999999999999999999999999999999877664
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.86 E-value=0.00019 Score=70.77 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHhcCC-hhchheeeeccccchhh
Q 043816 1 MERLPRDLNMNILSRLS-VKCLLRLRCVSKPFCSL 34 (378)
Q Consensus 1 i~~LP~Dll~eIL~rLp-~~sl~r~~~VcK~W~~~ 34 (378)
++.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 46899999999999999 99999999999999987
No 27
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.75 E-value=0.22 Score=45.28 Aligned_cols=191 Identities=11% Similarity=0.103 Sum_probs=106.8
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|+....+..+.|||..+++....-..... ......+.+.+..+.+-+.+ . ....+.+++..+...+.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~-~-------~d~~i~iwd~~~~~~~~ 155 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGP----GDAITGMKFNQFNTNQLFVS-S-------IRGATTLRDFSGSVIQV 155 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCCST----TCBEEEEEEETTEEEEEEEE-E-------TTTEEEEEETTSCEEEE
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecCCc----CCceeEEEeCCCCCCEEEEE-e-------CCCEEEEEECCCCceEE
Confidence 444444566789999998887655432111 34566677776433332222 2 24578889988766665
Q ss_pred eeccCCccccCCCCc--eEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCe-EEE
Q 043816 191 IRVDFPYYFSHPRDG--TFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGC-LYF 266 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~--v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~-L~l 266 (378)
.. .... ....-.+ ..-+|.....+..+ ..|..+|+..+....+...... -..+... +|+ +.+
T Consensus 156 ~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~~~------v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 156 FA-KTDS-WDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHKAK------VTHAEFNPRCDWLMA 221 (383)
T ss_dssp EE-CCCC-SSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSSSC------EEEEEECSSCTTEEE
T ss_pred Ee-ccCC-CCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCCCc------EEEEEECCCCCCEEE
Confidence 54 1110 0000011 22245543333322 3588999976655555432211 2223333 455 666
Q ss_pred EEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEee-cCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 267 SCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSK-SGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 267 ~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~-~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
.+..+. .+.+|.+.. .-.....+.. .....-+.+.+ +|..++.. ..++.+.+||+++.
T Consensus 222 s~~~d~--~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~l~~~-----------~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 222 TSSVDA--TVKLWDLRNIKDKNSYIAEMPH-----EKPVNAAYFNPTDSTKLLTT-----------DQRNEIRVYSSYDW 283 (383)
T ss_dssp EEETTS--EEEEEEGGGCCSTTCEEEEEEC-----SSCEEEEEECTTTSCEEEEE-----------ESSSEEEEEETTBT
T ss_pred EEeCCC--EEEEEeCCCCCcccceEEEecC-----CCceEEEEEcCCCCCEEEEE-----------cCCCcEEEEECCCC
Confidence 666555 999999976 2334444443 12234466677 88887777 47789999999886
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
+..
T Consensus 284 ~~~ 286 (383)
T 3ei3_B 284 SKP 286 (383)
T ss_dssp TSC
T ss_pred ccc
Confidence 653
No 28
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.27 E-value=0.00077 Score=66.38 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHhcC-Chhchheeeeccccchhh
Q 043816 2 ERLPRDLNMNILSRL-SVKCLLRLRCVSKPFCSL 34 (378)
Q Consensus 2 ~~LP~Dll~eIL~rL-p~~sl~r~~~VcK~W~~~ 34 (378)
+.||||++.+||++| |.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 379999999999999 899999999999999887
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.79 Score=41.01 Aligned_cols=191 Identities=9% Similarity=0.094 Sum_probs=96.7
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCC-CCEEEEEEEEecCCCCcccEEEEEEcCCCceE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVS-DDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSR 189 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~-~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~ 189 (378)
+|+....+..+.|||..++....+...... ...+..+.+.+.. +.+ ++... ....+.+|+..++.|.
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~-l~s~~-------~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTI-LASCS-------YDGKVLIWKEENGRWS 92 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSE-EEEEE-------TTSCEEEEEEETTEEE
T ss_pred EEEEEECCCcEEEEecCCCcceeeeEecCC----CCcEEEEEeCCCCCCCE-EEEec-------cCCEEEEEEcCCCcee
Confidence 333333455678888764333322222111 2344556665442 333 33222 2356889999998887
Q ss_pred EeeccCCccccCCCCceEEC----CeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe----
Q 043816 190 RIRVDFPYYFSHPRDGTFAR----GHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF---- 260 (378)
Q Consensus 190 ~~~~~~p~~~~~~~~~v~~~----G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~---- 260 (378)
.+. ..... ...-.++.++ |.+...+..+ ..|..+|+.+..- ..+.+..... . -..+...
T Consensus 93 ~~~-~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~---~-v~~~~~~~~~~ 160 (379)
T 3jrp_A 93 QIA-VHAVH-SASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAI---G-VNSASWAPATI 160 (379)
T ss_dssp EEE-EECCC-SSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCTT---C-EEEEEECCCC-
T ss_pred Eee-eecCC-CcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCCC---c-eEEEEEcCccc
Confidence 665 22211 0011133332 4333333322 2488888876521 1111111110 0 1222222
Q ss_pred ----------CCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeec---CCEEEEeeccCCCc
Q 043816 261 ----------SGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKS---GDKVLVDKFLYDED 324 (378)
Q Consensus 261 ----------~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~---g~~vl~~~~~~~~~ 324 (378)
+|.+.+++..+. .+.+|.+.. .|.....+... .....-+++.++ +..++..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~~~l~s~------- 227 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADN--LVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYLASV------- 227 (379)
T ss_dssp ---------CTTCEEEEEETTS--CEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEE-------
T ss_pred cccccccCCCCCCEEEEEeCCC--eEEEEEecCCCcceeeEEEEecc----cCcEeEEEECCCCCCCCeEEEE-------
Confidence 467777766666 899999976 56666666531 112233555666 5556555
Q ss_pred cccccCCcEEEEEECCCC
Q 043816 325 EDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 325 ~~~~~~~~~l~~yd~~t~ 342 (378)
..++.+.+||++++
T Consensus 228 ----~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 228 ----SQDRTCIIWTQDNE 241 (379)
T ss_dssp ----ETTSCEEEEEESST
T ss_pred ----eCCCEEEEEeCCCC
Confidence 36677888888776
No 30
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.50 E-value=1.3 Score=40.17 Aligned_cols=184 Identities=13% Similarity=0.091 Sum_probs=100.0
Q ss_pred eEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceE
Q 043816 111 LIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSR 189 (378)
Q Consensus 111 ll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~ 189 (378)
.+++.. .+..+.|+|..+++....-+.. .....+.+++.++ +-++... ....+.+++..++.-.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~-~l~~~~~-------~d~~i~v~d~~~~~~~ 67 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-------SNPMGAVISPDGT-KVYVANA-------HSNDVSIIDTATNNVI 67 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSS-EEEEEEG-------GGTEEEEEETTTTEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-------CCcceEEECCCCC-EEEEECC-------CCCeEEEEECCCCeEE
Confidence 344443 4568999999998876532221 1234566666543 2222211 2457889998887543
Q ss_pred EeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-CCe-E
Q 043816 190 RIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF-SGC-L 264 (378)
Q Consensus 190 ~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~-~G~-L 264 (378)
..- ..+. .-.++.+ +|..-+.+.... ..|..+|+.+.+... +.... . -..+... +|+ |
T Consensus 68 ~~~-~~~~----~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~------~-~~~~~~s~dg~~l 130 (391)
T 1l0q_A 68 ATV-PAGS----SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTGK------S-PLGLALSPDGKKL 130 (391)
T ss_dssp EEE-ECSS----SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS------S-EEEEEECTTSSEE
T ss_pred EEE-ECCC----CccceEECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCCC------C-cceEEECCCCCEE
Confidence 322 1111 1112322 465333333221 359999998876533 33221 1 2333333 565 4
Q ss_pred EEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 265 YFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 265 ~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
++....+. .+.+|.++. ... ..+... .....+.+.++|+.+++.. ..++.+..||+++++
T Consensus 131 ~~~~~~~~--~v~~~d~~~~~~~--~~~~~~-----~~~~~~~~~~dg~~l~~~~----------~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 131 YVTNNGDK--TVSVINTVTKAVI--NTVSVG-----RSPKGIAVTPDGTKVYVAN----------FDSMSISVIDTVTNS 191 (391)
T ss_dssp EEEETTTT--EEEEEETTTTEEE--EEEECC-----SSEEEEEECTTSSEEEEEE----------TTTTEEEEEETTTTE
T ss_pred EEEeCCCC--EEEEEECCCCcEE--EEEecC-----CCcceEEECCCCCEEEEEe----------CCCCEEEEEECCCCe
Confidence 44444344 899998866 322 233321 1224466777888776653 356789999999988
Q ss_pred EE
Q 043816 344 AA 345 (378)
Q Consensus 344 ~~ 345 (378)
..
T Consensus 192 ~~ 193 (391)
T 1l0q_A 192 VI 193 (391)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 31
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.12 E-value=0.38 Score=44.85 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=98.6
Q ss_pred cc-eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 109 NG-LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 109 ~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
++ +|.....+..+.|||..+++...+-..... ...+..+.+.|..+.+-+ ... ....+.+++.+++.
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH----~~~V~~l~f~p~~~~~l~-s~s-------~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA----GGSITGLKFNPLNTNQFY-ASS-------MEGTTRLQDFKGNI 198 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSS----SCCCCEEEECSSCTTEEE-EEC-------SSSCEEEEETTSCE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCC----CCCEEEEEEeCCCCCEEE-EEe-------CCCEEEEeeccCCc
Confidence 44 454444567899999998875543222211 345566777775554432 221 23467888888776
Q ss_pred eEEeeccCCccccCCCCce--EECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCee-EEEEe-CCe
Q 043816 188 SRRIRVDFPYYFSHPRDGT--FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLM-YMGNF-SGC 263 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v--~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~-~l~~~-~G~ 263 (378)
-+... ..... .....++ .-+|.+...+..+ ..|..+|+.++....+... .+ .+ .+... +|.
T Consensus 199 ~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~h------~~-~v~~v~~~p~~~ 263 (435)
T 4e54_B 199 LRVFA-SSDTI-NIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLRMH------KK-KVTHVALNPCCD 263 (435)
T ss_dssp EEEEE-CCSSC-SCCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSBCC------SS-CEEEEEECTTCS
T ss_pred eeEEe-ccCCC-CccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEecc------cc-eEEeeeecCCCc
Confidence 55544 11111 1111122 2245544433322 2488889876543322211 11 22 23222 444
Q ss_pred -EEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 264 -LYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 264 -L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
+.+.+..+. .+.||.+.. .-........ +......-+++.++|..|+.. ..++.+.+||+++
T Consensus 264 ~~~~s~s~d~--~v~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~spdg~~l~s~-----------~~D~~i~iwd~~~ 327 (435)
T 4e54_B 264 WFLATASVDQ--TVKIWDLRQVRGKASFLYSL---PHRHPVNAACFSPDGARLLTT-----------DQKSEIRVYSASQ 327 (435)
T ss_dssp SEEEEEETTS--BCCEEETTTCCSSSCCSBCC---BCSSCEEECCBCTTSSEEEEE-----------ESSSCEEEEESSS
T ss_pred eEEEEecCcc--eeeEEecccccccceEEEee---eccccccceeECCCCCeeEEE-----------cCCCEEEEEECCC
Confidence 444444455 899998865 1111000000 001112234456788877777 4678899999988
Q ss_pred CeEE
Q 043816 342 QRAA 345 (378)
Q Consensus 342 ~~~~ 345 (378)
....
T Consensus 328 ~~~~ 331 (435)
T 4e54_B 328 WDCP 331 (435)
T ss_dssp SSSE
T ss_pred Cccc
Confidence 6654
No 32
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=95.03 E-value=1.8 Score=38.56 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=103.6
Q ss_pred cceEEeecC-----CceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEE
Q 043816 109 NGLIALKNG-----ENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYS 182 (378)
Q Consensus 109 ~Gll~~~~~-----~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vys 182 (378)
+|+..+..+ ...+.+.||.|++... ++........ -....++.++. + ++..... ....+.+++
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~l-g~~~~~i~~~~--~--~lyv~~~------~~~~v~viD 70 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKL-GDVAQSMVIRD--G--IGWIVVN------NSHVIFAID 70 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCC-BSCEEEEEEET--T--EEEEEEG------GGTEEEEEE
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCccc-CccceEEEEEC--C--EEEEEEc------CCCEEEEEE
Confidence 466655553 5679999999998764 2110000000 11122333332 2 2222221 245788999
Q ss_pred cCCCce-EEeeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEE
Q 043816 183 LKSNSS-RRIRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGN 259 (378)
Q Consensus 183 s~t~~W-~~~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~ 259 (378)
..+++- +.+. .. ..... .+.-+|.+|...... ..|.++|+.+.+.. .++.+........ -..++.
T Consensus 71 ~~t~~~~~~i~-~~----~~p~~i~~~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~i~~g~~~~~~~~-p~~i~~ 138 (328)
T 3dsm_A 71 INTFKEVGRIT-GF----TSPRYIHFLSDEKAYVTQIWD------YRIFIINPKTYEITGYIECPDMDMESGS-TEQMVQ 138 (328)
T ss_dssp TTTCCEEEEEE-CC----SSEEEEEEEETTEEEEEEBSC------SEEEEEETTTTEEEEEEECTTCCTTTCB-CCCEEE
T ss_pred CcccEEEEEcC-CC----CCCcEEEEeCCCeEEEEECCC------CeEEEEECCCCeEEEEEEcCCccccCCC-cceEEE
Confidence 988764 2232 11 11111 222578888765222 25999999987764 4665542110001 122344
Q ss_pred eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 260 FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 260 ~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.+|+|++.... ....+.++.++. -..+.+++... ...-+.+.++|. +++.......+..+......++.+|+
T Consensus 139 ~~~~lyv~~~~-~~~~v~viD~~t-~~~~~~i~~g~-----~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 139 YGKYVYVNCWS-YQNRILKIDTET-DKVVDELTIGI-----QPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp ETTEEEEEECT-TCCEEEEEETTT-TEEEEEEECSS-----CBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred ECCEEEEEcCC-CCCEEEEEECCC-CeEEEEEEcCC-----CccceEEcCCCC-EEEEECCCccCCccccCCceEEEEEC
Confidence 67888888642 122777776655 12233444411 111245566665 44442100000000000268999999
Q ss_pred CCCeEEEEEEE
Q 043816 340 QNQRAAGQVTV 350 (378)
Q Consensus 340 ~t~~~~~~v~~ 350 (378)
+++++...+.+
T Consensus 211 ~t~~v~~~~~~ 221 (328)
T 3dsm_A 211 ETFTVEKQFKF 221 (328)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCeEEEEEec
Confidence 99988733333
No 33
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.73 E-value=2.3 Score=38.35 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=103.3
Q ss_pred cceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 109 NGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
+..|.+.. ....+.|+|+.+++....-... .....+.+++.++ +-++... ....+.+++..++.
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~-~l~~~~~-------~~~~v~~~d~~~~~ 149 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-------KSPLGLALSPDGK-KLYVTNN-------GDKTVSVINTVTKA 149 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSS-EEEEEET-------TTTEEEEEETTTTE
T ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-------CCcceEEECCCCC-EEEEEeC-------CCCEEEEEECCCCc
Confidence 34454444 3578999999998876543322 1235566666543 2222211 24578889988876
Q ss_pred eEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-CCe
Q 043816 188 SRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF-SGC 263 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~-~G~ 263 (378)
....- ..... -..+.+ +|..-++....+ ..|..+|+.+.+... +.... . -..+... +|+
T Consensus 150 ~~~~~-~~~~~----~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~------~-~~~~~~~~~g~ 212 (391)
T 1l0q_A 150 VINTV-SVGRS----PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKVEA------A-PSGIAVNPEGT 212 (391)
T ss_dssp EEEEE-ECCSS----EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS------E-EEEEEECTTSS
T ss_pred EEEEE-ecCCC----cceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEecCC------C-ccceEECCCCC
Confidence 54332 11100 012222 454443443322 359999998876543 33211 1 2223322 465
Q ss_pred EEEEEec-CCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 264 LYFSCFC-DYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 264 L~l~~~~-~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
..++... .....+.+|.++. ...+..+... ....-+.+.++|+.+++.. ..++.+.+||++++
T Consensus 213 ~l~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~-----~~~~~~~~s~dg~~l~~s~----------~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSMIDTGT-NKITARIPVG-----PDPAGIAVTPDGKKVYVAL----------SFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEEEECSSCCEEEEEETTT-TEEEEEEECC-----SSEEEEEECTTSSEEEEEE----------TTTTEEEEEETTTT
T ss_pred EEEEEecCcCCCcEEEEECCC-CeEEEEEecC-----CCccEEEEccCCCEEEEEc----------CCCCEEEEEECCCC
Confidence 4444442 1233899998865 1233444441 1123466677888776663 36789999999999
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
+..
T Consensus 277 ~~~ 279 (391)
T 1l0q_A 277 TIT 279 (391)
T ss_dssp EEE
T ss_pred cEE
Confidence 887
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=94.49 E-value=2.5 Score=37.63 Aligned_cols=192 Identities=14% Similarity=0.155 Sum_probs=97.9
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|+....+..+.|||..++++..+-..... ......+.+.+.+ .+-+.+ . ....+.+|+..++.+..
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~-~~l~~~-~-------~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEH----NGQVTGVDWAPDS-NRIVTC-G-------TDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEECC----SSCEEEEEEETTT-TEEEEE-E-------TTSCEEEEEEETTEEEE
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeecCC----CCcccEEEEeCCC-CEEEEE-c-------CCCeEEEEECCCCeeee
Confidence 343443566789999988853322221111 2345666777743 333222 1 23468888888887765
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCce-E---eeecCCCCCCCCCCCeeEEEEe-CCe
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEE-F---FEVPLPHLENRDSGNLMYMGNF-SGC 263 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~-~---~~i~~P~~~~~~~~~~~~l~~~-~G~ 263 (378)
.. ..... ...-.++.+ +|.....+..+. .|..+|+.+.. + ..+..+... . -..+... +|+
T Consensus 89 ~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~----~-i~~~~~~~~~~ 155 (372)
T 1k8k_C 89 TL-VILRI-NRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRS----T-VLSLDWHPNSV 155 (372)
T ss_dssp EE-ECCCC-SSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCS----C-EEEEEECTTSS
T ss_pred eE-EeecC-CCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeeecccCC----C-eeEEEEcCCCC
Confidence 44 11110 000012222 354444433321 26677765543 2 222222111 1 2333333 566
Q ss_pred EEEEEecCCCCcEEEEEEcC----------cee-------eeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccc
Q 043816 264 LYFSCFCDYPEPVDIWIMKE----------SWT-------KVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDED 326 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~----------~W~-------~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~ 326 (378)
+.+++..+. .+.+|.+.. .|. .+..+.. ......-+.+.++|+.++..
T Consensus 156 ~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~--------- 220 (372)
T 1k8k_C 156 LLAAGSCDF--KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS----SCGWVHGVCFSANGSRVAWV--------- 220 (372)
T ss_dssp EEEEEETTS--CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----CSSCEEEEEECSSSSEEEEE---------
T ss_pred EEEEEcCCC--CEEEEEcccccccccccccccccccchhhheEecCC----CCCeEEEEEECCCCCEEEEE---------
Confidence 666666555 899999642 122 1222221 11123346666788877777
Q ss_pred cccCCcEEEEEECCCCeEE
Q 043816 327 EGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 327 ~~~~~~~l~~yd~~t~~~~ 345 (378)
..++.+..||+++++..
T Consensus 221 --~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 221 --SHDSTVCLADADKKMAV 237 (372)
T ss_dssp --ETTTEEEEEEGGGTTEE
T ss_pred --eCCCEEEEEECCCCcee
Confidence 47789999999877765
No 35
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.35 E-value=1.7 Score=43.84 Aligned_cols=191 Identities=9% Similarity=0.094 Sum_probs=97.0
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCC-CCEEEEEEEEecCCCCcccEEEEEEcCCCceE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVS-DDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSR 189 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~-~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~ 189 (378)
+|+....+..+.|||..++....+...... ...+..+.+.+.. +.+ ++... ....+.+++..++.|.
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~-l~s~s-------~Dg~I~vwd~~~~~~~ 90 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTI-LASCS-------YDGKVLIWKEENGRWS 90 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEECCC----SSCEEEEEECCTTSCSE-EEEEE-------TTSCEEEEEEETTEEE
T ss_pred eEEEEECCCcEEEEecCCCCCccceeccCC----cCceEEEEecCCCCCCE-EEEEe-------CCCeEEEEECCCCccc
Confidence 333333455678888764443333222211 3345666666553 333 33322 2456889999888887
Q ss_pred EeeccCCccccCCCCceEEC----CeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe----
Q 043816 190 RIRVDFPYYFSHPRDGTFAR----GHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF---- 260 (378)
Q Consensus 190 ~~~~~~p~~~~~~~~~v~~~----G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~---- 260 (378)
.+. ..... ...-.++.++ |.+...+..+ ..|..+|+.+..- ..+.+..... . -..+...
T Consensus 91 ~~~-~~~~h-~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~~---~-v~~l~~~p~~~ 158 (753)
T 3jro_A 91 QIA-VHAVH-SASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAI---G-VNSASWAPATI 158 (753)
T ss_dssp EEE-EECCC-SSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCSS---C-EEEEEECCCC-
T ss_pred ccc-cccCC-CCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCCC---c-eEEEEecCccc
Confidence 665 22111 0111133332 4444443332 2488888876521 1111110000 0 1112211
Q ss_pred ----------CCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeec---CCEEEEeeccCCCc
Q 043816 261 ----------SGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKS---GDKVLVDKFLYDED 324 (378)
Q Consensus 261 ----------~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~---g~~vl~~~~~~~~~ 324 (378)
+|.+.+++..+. .|.+|.+.. .+.....+... .....-+++.++ |..++..
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~~~l~s~------- 225 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADN--LVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYLASV------- 225 (753)
T ss_dssp --------CGGGCCEEEEETTS--CEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEE-------
T ss_pred ccccccccCCCCCEEEEEECCC--eEEEEeccCCcccceeeeeecCC----CCcEEEEEeccCCCCCCEEEEE-------
Confidence 466666666665 899999976 56665555531 112333555666 5666655
Q ss_pred cccccCCcEEEEEECCCC
Q 043816 325 EDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 325 ~~~~~~~~~l~~yd~~t~ 342 (378)
..++.+.+||++++
T Consensus 226 ----s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 226 ----SQDRTCIIWTQDNE 239 (753)
T ss_dssp ----ESSSCEEEEEESSS
T ss_pred ----ecCCEEEEecCCCC
Confidence 46778888888876
No 36
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=94.08 E-value=3.5 Score=37.75 Aligned_cols=202 Identities=14% Similarity=0.135 Sum_probs=104.1
Q ss_pred cccceEEeec-CCceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
+.+|-+++.. .+..+.++|+.+++... ++.. ......+.+++..+ + ++... . ....+.+|+..
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~-l~~~~-~-----~~~~i~~~d~~ 242 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLT-------GKWSKILLYDPIRD-L-VYCSN-W-----ISEDISVIDRK 242 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS-------SSSEEEEEEETTTT-E-EEEEE-T-----TTTEEEEEETT
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCC-------CCCeeEEEEcCCCC-E-EEEEe-c-----CCCcEEEEECC
Confidence 3456555544 45689999998876653 3311 22345566776544 2 22221 0 23478889988
Q ss_pred CCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCC-C-CCCEEEEEECCCceEeee-cCCCCCCCCCCCeeEEEE
Q 043816 185 SNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEG-Y-NGDLIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGN 259 (378)
Q Consensus 185 t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~-~-~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~ 259 (378)
++.....- ..... -.++.+ +|...+.+...... . ....|..+|+.+.+.... ..+.. ...+..
T Consensus 243 ~~~~~~~~-~~~~~----~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~-------~~~~~~ 310 (433)
T 3bws_A 243 TKLEIRKT-DKIGL----PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN-------KRHIVS 310 (433)
T ss_dssp TTEEEEEC-CCCSE----EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC-------EEEEEE
T ss_pred CCcEEEEe-cCCCC----ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC-------cceEEE
Confidence 87543322 11110 112333 56555554432111 0 124688999987654332 21111 122222
Q ss_pred -eCC-eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcc------ccccCC
Q 043816 260 -FSG-CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDE------DEGINK 331 (378)
Q Consensus 260 -~~G-~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~------~~~~~~ 331 (378)
.+| .|++....+. .+.+|.++. ...+..++. .....-+++.++|..++..... .+. ..+..+
T Consensus 311 ~~~g~~l~~~~~~~~--~v~v~d~~~-~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~--~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 311 GNTENKIYVSDMCCS--KIEVYDLKE-KKVQKSIPV-----FDKPNTIALSPDGKYLYVSCRG--PNHPTEGYLKKGLVL 380 (433)
T ss_dssp CSSTTEEEEEETTTT--EEEEEETTT-TEEEEEEEC-----SSSEEEEEECTTSSEEEEEECC--CCCTTTCTTSCCSSC
T ss_pred CCCCCEEEEEecCCC--EEEEEECCC-CcEEEEecC-----CCCCCeEEEcCCCCEEEEEecC--CCccccccccccccc
Confidence 245 4555545444 899998875 223334443 1123346777888877777310 000 000013
Q ss_pred cEEEEEECCCCeEE
Q 043816 332 WELDWYDLQNQRAA 345 (378)
Q Consensus 332 ~~l~~yd~~t~~~~ 345 (378)
+.+..||+++++..
T Consensus 381 g~v~~~d~~~~~~~ 394 (433)
T 3bws_A 381 GKVYVIDTTTDTVK 394 (433)
T ss_dssp CEEEEEETTTTEEE
T ss_pred eEEEEEECCCCcEE
Confidence 59999999998877
No 37
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.01 E-value=2.3 Score=36.38 Aligned_cols=115 Identities=11% Similarity=0.074 Sum_probs=73.3
Q ss_pred EECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCce
Q 043816 207 FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESW 285 (378)
Q Consensus 207 ~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W 285 (378)
+.+|.+|.-++.. ....|..+|+++.+- ..+++|.... -.-+...+++|+++...+. .+.++-.+ .-
T Consensus 28 ~~~~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~~~f-----geGi~~~~~~ly~ltw~~~--~v~v~D~~-tl 95 (243)
T 3mbr_X 28 YLRGHLYESTGET----GRSSVRKVDLETGRILQRAEVPPPYF-----GAGIVAWRDRLIQLTWRNH--EGFVYDLA-TL 95 (243)
T ss_dssp EETTEEEEEECCT----TSCEEEEEETTTCCEEEEEECCTTCC-----EEEEEEETTEEEEEESSSS--EEEEEETT-TT
T ss_pred EECCEEEEECCCC----CCceEEEEECCCCCEEEEEeCCCCcc-----eeEEEEeCCEEEEEEeeCC--EEEEEECC-cC
Confidence 4456666654432 123599999987655 5577775432 3346667899999875544 44444433 44
Q ss_pred eeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 286 TKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 286 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
.++.+++... ...++..+|+.+++.+ .+..|.++|++|.+..++|.+.
T Consensus 96 ~~~~ti~~~~-------~Gwglt~dg~~L~vSd-----------gs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 96 TPRARFRYPG-------EGWALTSDDSHLYMSD-----------GTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp EEEEEEECSS-------CCCEEEECSSCEEEEC-----------SSSEEEEECTTTCCEEEEEECE
T ss_pred cEEEEEeCCC-------CceEEeeCCCEEEEEC-----------CCCeEEEEeCCCCeEEEEEEEc
Confidence 5666777631 1244555777788873 4778999999998777566653
No 38
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=93.96 E-value=3 Score=36.53 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=58.9
Q ss_pred EEEEEECCC-ceEee-----ecCCCCCCCCCCCeeEEEE-eCCe-EEEEEecCCCCcEEEEEEcC---ceeeeEEEec-C
Q 043816 227 LIVAFDLKS-EEFFE-----VPLPHLENRDSGNLMYMGN-FSGC-LYFSCFCDYPEPVDIWIMKE---SWTKVFSFAG-G 294 (378)
Q Consensus 227 ~il~fD~~~-~~~~~-----i~~P~~~~~~~~~~~~l~~-~~G~-L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~-~ 294 (378)
.|..+|+.+ .+... +..+.... -..+.. .+|+ |+++..... .+.+|.++. .+.....+.. +
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~pdg~~l~~~~~~~~--~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGAG-----PRHMVFHPNEQYAYCVNELNS--SVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCC-----EEEEEECTTSSEEEEEETTTT--EEEEEESSCTTSCCEEEEEEECSC
T ss_pred EEEEEEecCCCceeeecccccccCCCCC-----cceEEECCCCCEEEEEeCCCC--EEEEEEecCCCCcEEEEeeccccC
Confidence 488999876 55542 33332221 222333 3565 444443334 899999964 4544444442 1
Q ss_pred -ccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC--CCeEEEEEE
Q 043816 295 -VFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ--NQRAAGQVT 349 (378)
Q Consensus 295 -~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~--t~~~~~~v~ 349 (378)
.........-+++.++|+.+++.. ..++.+..||++ +++.+ .+.
T Consensus 225 ~~~~~~~~~~~i~~s~dg~~l~v~~----------~~~~~i~v~d~~~~~~~~~-~~~ 271 (343)
T 1ri6_A 225 ENFSDTRWAADIHITPDGRHLYACD----------RTASLITVFSVSEDGSVLS-KEG 271 (343)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEE----------TTTTEEEEEEECTTSCCEE-EEE
T ss_pred ccccccCCccceEECCCCCEEEEEe----------cCCCEEEEEEEcCCCCceE-Eee
Confidence 111122233467778888787663 356789999998 56666 554
No 39
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.58 E-value=1 Score=40.57 Aligned_cols=189 Identities=10% Similarity=0.067 Sum_probs=89.0
Q ss_pred CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc-eEEeeccC
Q 043816 117 GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS-SRRIRVDF 195 (378)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~-W~~~~~~~ 195 (378)
.+..+.|||..++.+..+-..... ......+.+.+.++ +-+ ... ....+.+|+..++. |+... .+
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~-~l~-s~s-------~d~~v~vwd~~~~~~~~~~~-~~ 96 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDH----DKIVTCVDWAPKSN-RIV-TCS-------QDRNAYVYEKRPDGTWKQTL-VL 96 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCC----SSCEEEEEECTTTC-CEE-EEE-------TTSSEEEC------CCCCEE-EC
T ss_pred CCCEEEEEEccCCceEEEEEEecC----CceEEEEEEeCCCC-EEE-EEe-------CCCeEEEEEcCCCCceeeee-Ee
Confidence 456788999988865444433322 34556667776543 222 221 23467888887776 55443 11
Q ss_pred CccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCce----EeeecCCCCCCCCCCCeeEEEEe-CCeEEEEE
Q 043816 196 PYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEE----FFEVPLPHLENRDSGNLMYMGNF-SGCLYFSC 268 (378)
Q Consensus 196 p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~----~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~ 268 (378)
... ...-.++.+ +|.....+..+ ..|..+|+.+.. ...+..|... . -..+... +|++.+.+
T Consensus 97 ~~~-~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~----~-v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 97 LRL-NRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRS----T-ILSLDWHPNNVLLAAG 164 (377)
T ss_dssp CCC-SSCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCS----C-EEEEEECTTSSEEEEE
T ss_pred ccc-CCceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCC----C-eEEEEEcCCCCEEEEE
Confidence 110 000012222 34433333322 137888887654 2333332111 1 2233333 56666666
Q ss_pred ecCCCCcEEEEEEcC----------ceeeeEEEec--CccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEE
Q 043816 269 FCDYPEPVDIWIMKE----------SWTKVFSFAG--GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDW 336 (378)
Q Consensus 269 ~~~~~~~i~iW~l~~----------~W~~~~~i~~--~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~ 336 (378)
..+. .+.+|.+.. .|........ ..++......-+++.++|..|+.. ..++.+.+
T Consensus 165 ~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-----------~~d~~i~i 231 (377)
T 3dwl_C 165 CADR--KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA-----------GHDSSVTI 231 (377)
T ss_dssp ESSS--CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE-----------ETTTEEC-
T ss_pred eCCC--EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE-----------eCCCcEEE
Confidence 6655 899999852 2322111110 001111223446667788877777 36788999
Q ss_pred EECCCCeE
Q 043816 337 YDLQNQRA 344 (378)
Q Consensus 337 yd~~t~~~ 344 (378)
||+++++.
T Consensus 232 wd~~~~~~ 239 (377)
T 3dwl_C 232 AYPSAPEQ 239 (377)
T ss_dssp CEECSTTS
T ss_pred EECCCCCC
Confidence 99988764
No 40
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.48 E-value=3.6 Score=35.98 Aligned_cols=189 Identities=11% Similarity=0.063 Sum_probs=101.2
Q ss_pred ccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 108 CNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
..+.+.+.. ....+.++|+.|++....-..+. ... .+.+++.++ + ++.... ....+.+++..++
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~-~~~~s~dg~-~-l~~~~~------~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGY------DFV-DTAITSDCS-N-VVVTSD------FCQTLVQIETQLE 72 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC------CEE-EEEECSSSC-E-EEEEES------TTCEEEEEECSSS
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeeeEEccC------Ccc-eEEEcCCCC-E-EEEEeC------CCCeEEEEECCCC
Confidence 344444443 45689999999998865433221 122 677777654 2 322221 2347888998887
Q ss_pred ce--EEeeccCCccccCCCCceE--ECCe-eEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe
Q 043816 187 SS--RRIRVDFPYYFSHPRDGTF--ARGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF 260 (378)
Q Consensus 187 ~W--~~~~~~~p~~~~~~~~~v~--~~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~ 260 (378)
.- +... . . .....++. -+|. +| ..... .....|..+|+.+.+... ++.... ...+...
T Consensus 73 ~~~~~~~~-~-~---~~~~~~~~~s~dg~~l~-~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~-------~~~~~~s 136 (331)
T 3u4y_A 73 PPKVVAIQ-E-G---QSSMADVDITPDDQFAV-TVTGL---NHPFNMQSYSFLKNKFISTIPIPYD-------AVGIAIS 136 (331)
T ss_dssp SCEEEEEE-E-C---SSCCCCEEECTTSSEEE-ECCCS---SSSCEEEEEETTTTEEEEEEECCTT-------EEEEEEC
T ss_pred ceeEEecc-c-C---CCCccceEECCCCCEEE-EecCC---CCcccEEEEECCCCCeEEEEECCCC-------ccceEEC
Confidence 64 2222 0 0 11111132 2454 44 32221 011269999998766533 333211 2233333
Q ss_pred -CCe-EEEEEecCCCCc-EEEEEEcC--ceee--eEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcE
Q 043816 261 -SGC-LYFSCFCDYPEP-VDIWIMKE--SWTK--VFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 261 -~G~-L~l~~~~~~~~~-i~iW~l~~--~W~~--~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~ 333 (378)
+|+ |++...... . +.+|.++. .-.. ...+.. .....-+++.++|+.+++.. ..+..
T Consensus 137 pdg~~l~~~~~~~~--~~i~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~----------~~~~~ 199 (331)
T 3u4y_A 137 PNGNGLILIDRSSA--NTVRRFKIDADGVLFDTGQEFISG-----GTRPFNITFTPDGNFAFVAN----------LIGNS 199 (331)
T ss_dssp TTSSCEEEEEETTT--TEEEEEEECTTCCEEEEEEEEECS-----SSSEEEEEECTTSSEEEEEE----------TTTTE
T ss_pred CCCCEEEEEecCCC--ceEEEEEECCCCcEeecCCccccC-----CCCccceEECCCCCEEEEEe----------CCCCe
Confidence 565 555555434 6 99999876 2111 122222 11234467788888777763 35678
Q ss_pred EEEEECCCCeE
Q 043816 334 LDWYDLQNQRA 344 (378)
Q Consensus 334 l~~yd~~t~~~ 344 (378)
+..||+++++.
T Consensus 200 v~v~d~~~~~~ 210 (331)
T 3u4y_A 200 IGILETQNPEN 210 (331)
T ss_dssp EEEEECSSTTS
T ss_pred EEEEECCCCcc
Confidence 99999998885
No 41
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.46 E-value=3.9 Score=36.23 Aligned_cols=151 Identities=7% Similarity=-0.016 Sum_probs=78.4
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecC-CCCCCCCCC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPL-PHLENRDSG 252 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~-P~~~~~~~~ 252 (378)
...+..++..++.++.+. .... ...... .+.-+|.+|....... ...|..+|+.+...+.+.. +.....
T Consensus 17 ~i~v~~~d~~tg~~~~~~-~~~~-~~~p~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~~~~~--- 87 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDG-LLAA-TQNPTYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHKLNTVVAPGTP--- 87 (347)
T ss_dssp EEEEEEEETTTTEEEEEE-EEEE-CSCCCCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEEEEEEEEESCC---
T ss_pred CEEEEEEcCCCCeEEEee-eeec-cCCcceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEEeeeeecCCCC---
Confidence 344444555677776654 1111 111111 2223688887765311 1249999998777665532 211111
Q ss_pred CeeEEEE-eCCeEEEEEecCCCCcEEEEEEcC--ceeeeEEEecCccc-----cceeeEEEEEeecCCEEEEeeccCCCc
Q 043816 253 NLMYMGN-FSGCLYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVFG-----IFTYAKALAYSKSGDKVLVDKFLYDED 324 (378)
Q Consensus 253 ~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~~-----~~~~~~~~~~~~~g~~vl~~~~~~~~~ 324 (378)
-..++. .+|+..++..... ..+.+|.++. ....+..+.....+ ......-+++.++|+ ++...
T Consensus 88 -p~~~a~spdg~~l~~~~~~~-~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~------ 158 (347)
T 3hfq_A 88 -PAYVAVDEARQLVYSANYHK-GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVID------ 158 (347)
T ss_dssp -CSEEEEETTTTEEEEEETTT-TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEE------
T ss_pred -CEEEEECCCCCEEEEEeCCC-CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEe------
Confidence 223333 3566444444222 2899999964 44444444431111 111233467778888 55553
Q ss_pred cccccCCcEEEEEECC-CCeEEEEE
Q 043816 325 EDEGINKWELDWYDLQ-NQRAAGQV 348 (378)
Q Consensus 325 ~~~~~~~~~l~~yd~~-t~~~~~~v 348 (378)
.....+..||++ ++++. .+
T Consensus 159 ----~~~~~v~~~~~~~~g~~~-~~ 178 (347)
T 3hfq_A 159 ----LGSDKVYVYNVSDAGQLS-EQ 178 (347)
T ss_dssp ----TTTTEEEEEEECTTSCEE-EE
T ss_pred ----CCCCEEEEEEECCCCcEE-Ee
Confidence 356789999988 66666 44
No 42
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=93.36 E-value=3.8 Score=35.82 Aligned_cols=141 Identities=4% Similarity=-0.087 Sum_probs=70.7
Q ss_pred cEEEEEEcC--CCceEEeeccCCccccCCCCceE--ECCeeEEEEEeCCCCCCCCEEEEEECCCc-eEee---ecCCCCC
Q 043816 176 TEIAVYSLK--SNSSRRIRVDFPYYFSHPRDGTF--ARGHVHWLVLNEPEGYNGDLIVAFDLKSE-EFFE---VPLPHLE 247 (378)
Q Consensus 176 ~~~~vyss~--t~~W~~~~~~~p~~~~~~~~~v~--~~G~lYwl~~~~~~~~~~~~il~fD~~~~-~~~~---i~~P~~~ 247 (378)
..+.+|+.. ++.++.+. ..+... .-..+. -+|...+.+.... ..|..+|+.+. .... +......
T Consensus 60 ~~v~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~ 131 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAA-ESALPG--SLTHISTDHQGQFVFVGSYNA-----GNVSVTRLEDGLPVGVVDVVEGLDGC 131 (343)
T ss_dssp TEEEEEEECTTTCCEEEEE-EEECSS--CCSEEEECTTSSEEEEEETTT-----TEEEEEEEETTEEEEEEEEECCCTTB
T ss_pred CeEEEEEecCCCCceeecc-ccccCC--CCcEEEEcCCCCEEEEEecCC-----CeEEEEECCCCccccccccccCCCCc
Confidence 578888877 77887665 222211 111233 3465433333321 24788887322 2222 2221111
Q ss_pred CCCCCCeeEEEEeCCeEEEEEe-cCCCCcEEEEEEcC--ceeeeE--EEecCccccceeeEEEEEeecCCEEEEeeccCC
Q 043816 248 NRDSGNLMYMGNFSGCLYFSCF-CDYPEPVDIWIMKE--SWTKVF--SFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYD 322 (378)
Q Consensus 248 ~~~~~~~~~l~~~~G~L~l~~~-~~~~~~i~iW~l~~--~W~~~~--~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~ 322 (378)
. .+. ...+|+..++.. ... .+.+|.++. ...... .+.... .....-+.+.++|+.+++..
T Consensus 132 ~-----~~~-~s~dg~~l~~~~~~~~--~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~pdg~~l~~~~---- 196 (343)
T 1ri6_A 132 H-----SAN-ISPDNRTLWVPALKQD--RICLFTVSDDGHLVAQDPAEVTTVE---GAGPRHMVFHPNEQYAYCVN---- 196 (343)
T ss_dssp C-----CCE-ECTTSSEEEEEEGGGT--EEEEEEECTTSCEEEEEEEEEECST---TCCEEEEEECTTSSEEEEEE----
T ss_pred e-----EEE-ECCCCCEEEEecCCCC--EEEEEEecCCCceeeecccccccCC---CCCcceEEECCCCCEEEEEe----
Confidence 1 111 222454333333 444 899999875 444333 333211 11223366778888777663
Q ss_pred CccccccCCcEEEEEECC--CCeEE
Q 043816 323 EDEDEGINKWELDWYDLQ--NQRAA 345 (378)
Q Consensus 323 ~~~~~~~~~~~l~~yd~~--t~~~~ 345 (378)
..+..+..||++ +++++
T Consensus 197 ------~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 197 ------ELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ------TTTTEEEEEESSCTTSCCE
T ss_pred ------CCCCEEEEEEecCCCCcEE
Confidence 356789999984 45554
No 43
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=93.23 E-value=3.4 Score=34.98 Aligned_cols=209 Identities=11% Similarity=-0.042 Sum_probs=99.2
Q ss_pred ccceEEeecCCceEEEEcCCC-cceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 108 CNGLIALKNGENDIALWNPST-KKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
-+|-.++......++++|..+ ++...+...... .....+.+.|.+. + ++.... . ......+.+++..++
T Consensus 51 pdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~-~-l~~~~~-~--~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 51 PDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT-----ICNNDHGISPDGA-L-YAISDK-V--EFGKSAIYLLPSTGG 120 (297)
T ss_dssp TTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC-----CBCSCCEECTTSS-E-EEEEEC-T--TTSSCEEEEEETTCC
T ss_pred CCCCEEEEEcCCeEEEEeCCCCCCceEecccccc-----ccccceEECCCCC-E-EEEEEe-C--CCCcceEEEEECCCC
Confidence 345433333466899999999 887776544321 1222344555433 2 222221 1 112456666776666
Q ss_pred ceEEeeccCCccccCCCCceEE--CCe-eEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCC
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFA--RGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSG 262 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~--~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G 262 (378)
.-+.+. .... ...+.+ +|. +++...... ...|..+|..+.....+...... ...+.. .+|
T Consensus 121 ~~~~~~-~~~~-----~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~s~dg 184 (297)
T 2ojh_A 121 TPRLMT-KNLP-----SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEGR------NDGPDYSPDG 184 (297)
T ss_dssp CCEECC-SSSS-----EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSSC------EEEEEECTTS
T ss_pred ceEEee-cCCC-----ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCCc------cccceECCCC
Confidence 544443 1111 011112 454 343333321 12477777776655444221111 222333 356
Q ss_pred eEEEEEe-cCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 263 CLYFSCF-CDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 263 ~L~l~~~-~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
+..++.. ... .+.||.++..-.....+... ......+.+.++|+.|++.................++.||+++
T Consensus 185 ~~l~~~~~~~~--~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 185 RWIYFNSSRTG--QMQIWRVRVDGSSVERITDS----AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp SEEEEEECTTS--SCEEEEEETTSSCEEECCCC----SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred CEEEEEecCCC--CccEEEECCCCCCcEEEecC----CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 5444443 344 78999886311122222221 1123335667788877777310000000000125799999999
Q ss_pred CeEEEEEE
Q 043816 342 QRAAGQVT 349 (378)
Q Consensus 342 ~~~~~~v~ 349 (378)
++.+ .+.
T Consensus 259 ~~~~-~~~ 265 (297)
T 2ojh_A 259 GNVE-TLF 265 (297)
T ss_dssp CSCE-EEE
T ss_pred CCce-eee
Confidence 9887 654
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.16 E-value=4 Score=35.51 Aligned_cols=194 Identities=11% Similarity=0.118 Sum_probs=101.1
Q ss_pred ccceEEeecCCceEEEEcCCCcceeec-CCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 108 CNGLIALKNGENDIALWNPSTKKHVLL-PKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~L-P~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
.+|-+++...+..+.|||..+++.... ...... ........+.+.+.+ .+-+++ . ....+.+|+..++
T Consensus 61 ~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~-~-------~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 61 NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCL--NRDNYIRSCKLLPDG-CTLIVG-G-------EASTLSIWDLAAP 129 (337)
T ss_dssp SSSSEEEEECBSEEEEEETTSTTCCSCSEEEECS--CTTSBEEEEEECTTS-SEEEEE-E-------SSSEEEEEECCCC
T ss_pred cCCcEEEEcCCCeEEEEECCCCCceeeeeccccc--CCCCcEEEEEEcCCC-CEEEEE-c-------CCCcEEEEECCCC
Confidence 355444444467899999887653221 111100 113455666777643 332222 1 2457889999887
Q ss_pred ceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-CC
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF-SG 262 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~-~G 262 (378)
...... .+... ...-.++.+ +|.....+..+ ..|..+|+.+.+... +..... . -..+... +|
T Consensus 130 ~~~~~~-~~~~~-~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~~-----~-i~~~~~~~~~ 195 (337)
T 1gxr_A 130 TPRIKA-ELTSS-APACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTD-----G-ASCIDISNDG 195 (337)
T ss_dssp --EEEE-EEECS-SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS-----C-EEEEEECTTS
T ss_pred Ccceee-ecccC-CCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeecccC-----c-eEEEEECCCC
Confidence 754433 11110 000012222 45544444332 238899998765433 332111 1 2233333 56
Q ss_pred eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 263 CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
+..+++..+. .+.+|.++.. .....+.. .....-+.+.++|+.++.. ..++.+..||++++
T Consensus 196 ~~l~~~~~dg--~i~~~d~~~~-~~~~~~~~-----~~~v~~~~~s~~~~~l~~~-----------~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 196 TKLWTGGLDN--TVRSWDLREG-RQLQQHDF-----TSQIFSLGYCPTGEWLAVG-----------MESSNVEVLHVNKP 256 (337)
T ss_dssp SEEEEEETTS--EEEEEETTTT-EEEEEEEC-----SSCEEEEEECTTSSEEEEE-----------ETTSCEEEEETTSS
T ss_pred CEEEEEecCC--cEEEEECCCC-ceEeeecC-----CCceEEEEECCCCCEEEEE-----------cCCCcEEEEECCCC
Confidence 6666666555 8999988761 12222332 1122345667788888877 36778999999988
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
+..
T Consensus 257 ~~~ 259 (337)
T 1gxr_A 257 DKY 259 (337)
T ss_dssp CEE
T ss_pred CeE
Confidence 766
No 45
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=93.11 E-value=3.8 Score=35.09 Aligned_cols=189 Identities=11% Similarity=-0.011 Sum_probs=95.4
Q ss_pred cccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
..+|.+.+.. ....++++|| +++...+..+.. .....++.+|+... +.... . ....+.+|+. +
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-----~~~~~~i~~~~~g~---l~v~~-~-----~~~~i~~~~~-~ 170 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK-----GSYPSFITLGSDNA---LWFTE-N-----QNNAIGRITE-S 170 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-----TCCEEEEEECTTSC---EEEEE-T-----TTTEEEEECT-T
T ss_pred CCCCCEEEEecCCceEEEECC-CCCEEEecCCCC-----CCCCceEEEcCCCC---EEEEe-C-----CCCEEEEEcC-C
Confidence 3467666554 4568999999 777665433211 22345566666532 22211 0 1346677777 6
Q ss_pred CceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CC
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SG 262 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G 262 (378)
+...... .+.... .-.++.+ +|.+|+.. .. ...|..+|+ +.++..+..|.... . -..+... +|
T Consensus 171 g~~~~~~--~~~~~~-~~~~i~~~~~g~l~v~~-~~-----~~~i~~~~~-~g~~~~~~~~~~~~---~-~~~i~~~~~g 236 (299)
T 2z2n_A 171 GDITEFK--IPTPAS-GPVGITKGNDDALWFVE-II-----GNKIGRITT-SGEITEFKIPTPNA---R-PHAITAGAGI 236 (299)
T ss_dssp CCEEEEE--CSSTTC-CEEEEEECTTSSEEEEE-TT-----TTEEEEECT-TCCEEEEECSSTTC---C-EEEEEECSTT
T ss_pred CcEEEee--CCCCCC-cceeEEECCCCCEEEEc-cC-----CceEEEECC-CCcEEEEECCCCCC---C-ceeEEECCCC
Confidence 6665543 111111 1113444 57875543 22 135999999 66676665553222 1 2334443 57
Q ss_pred eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 263 CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
+|++...... .+..|..+.. ...+..+ ........+.+ .+|. +++.. ..+.+..||++++
T Consensus 237 ~l~v~~~~~~--~i~~~d~~g~---~~~~~~~--~~~~~~~~i~~-~~g~-l~v~~-----------~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 237 DLWFTEWGAN--KIGRLTSNNI---IEEYPIQ--IKSAEPHGICF-DGET-IWFAM-----------ECDKIGKLTLIKD 296 (299)
T ss_dssp CEEEEETTTT--EEEEEETTTE---EEEEECS--SSSCCEEEEEE-CSSC-EEEEE-----------TTTEEEEEEEC--
T ss_pred CEEEeccCCc--eEEEECCCCc---eEEEeCC--CCCCccceEEe-cCCC-EEEEe-----------cCCcEEEEEcCcc
Confidence 8777664433 6666655322 1222221 01112233455 5555 55552 4689999999988
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
+++
T Consensus 297 ~~~ 299 (299)
T 2z2n_A 297 NME 299 (299)
T ss_dssp ---
T ss_pred cCC
Confidence 764
No 46
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=92.39 E-value=8.2 Score=37.16 Aligned_cols=194 Identities=14% Similarity=0.073 Sum_probs=104.1
Q ss_pred ccceEEeec-CCceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEc--
Q 043816 108 CNGLIALKN-GENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSL-- 183 (378)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss-- 183 (378)
-+|.+++.. ....+.|+|+.|++... ++... . ..++.++|+++ |-.+ .. ....+.+|+.
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~------~--~~~v~~spdg~-~l~v-~~-------~d~~V~v~D~~~ 209 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY------A--VHISRMSASGR-YLLV-IG-------RDARIDMIDLWA 209 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECST------T--EEEEEECTTSC-EEEE-EE-------TTSEEEEEETTS
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecCc------c--cceEEECCCCC-EEEE-EC-------CCCeEEEEECcC
Confidence 366666655 45689999999998753 33211 1 44666777554 3222 22 1257888988
Q ss_pred CCCceEEeeccCCccccCCCCceEE------CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCC------CC
Q 043816 184 KSNSSRRIRVDFPYYFSHPRDGTFA------RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLEN------RD 250 (378)
Q Consensus 184 ~t~~W~~~~~~~p~~~~~~~~~v~~------~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~------~~ 250 (378)
.++. .+. .++.. .... ++.+ +|..-+.+.... ..|.++|..+.+. ..++.+.... .+
T Consensus 210 ~t~~--~~~-~i~~g-~~p~-~va~sp~~~~dg~~l~v~~~~~-----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 210 KEPT--KVA-EIKIG-IEAR-SVESSKFKGYEDRYTIAGAYWP-----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp SSCE--EEE-EEECC-SEEE-EEEECCSTTCTTTEEEEEEEES-----SEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred CCCc--EEE-EEecC-CCcc-eEEeCCCcCCCCCEEEEEEccC-----CeEEEEeccccccceeecccCcccCccccccC
Confidence 5543 222 12210 0011 2222 565444443321 2488999877543 4455432110 00
Q ss_pred CCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccc
Q 043816 251 SGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEG 328 (378)
Q Consensus 251 ~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~ 328 (378)
.. -..+... +|...++..... ..|.+|.+.+ .-.++..++... ...-+++.++|..++...
T Consensus 280 ~~-v~~i~~s~~~~~~~vs~~~~-g~i~vvd~~~~~~l~~~~i~~~~-----~~~~~~~spdg~~l~va~---------- 342 (543)
T 1nir_A 280 PR-VAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAP-----FLHDGGWDSSHRYFMTAA---------- 342 (543)
T ss_dssp CC-EEEEEECSSSSEEEEEETTT-TEEEEEECTTSSSCEEEEEECCS-----SCCCEEECTTSCEEEEEE----------
T ss_pred Cc-eEEEEECCCCCEEEEEECCC-CeEEEEEecCCCcceeEEeccCc-----CccCceECCCCCEEEEEe----------
Confidence 01 2233333 355555554433 3888888876 222334455411 122367778888777763
Q ss_pred cCCcEEEEEECCCCeEE
Q 043816 329 INKWELDWYDLQNQRAA 345 (378)
Q Consensus 329 ~~~~~l~~yd~~t~~~~ 345 (378)
..+..+.++|.+++++.
T Consensus 343 ~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 343 NNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp GGGTEEEEEETTTTEEE
T ss_pred cCCCeEEEEECCCCeEE
Confidence 35678999999999888
No 47
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.07 E-value=5.1 Score=34.11 Aligned_cols=197 Identities=12% Similarity=0.066 Sum_probs=102.2
Q ss_pred eecccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEc
Q 043816 105 IDTCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSL 183 (378)
Q Consensus 105 ~~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 183 (378)
++..+|.|.+.+ ....+.++++-++....+-... .....++.+|+.++. +..... ....+.+++.
T Consensus 43 ~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~------~~~p~~ia~d~~~~~--lyv~d~------~~~~I~~~~~ 108 (267)
T 1npe_A 43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD------LGSPEGIALDHLGRT--IFWTDS------QLDRIEVAKM 108 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT------CCCEEEEEEETTTTE--EEEEET------TTTEEEEEET
T ss_pred EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC------CCCccEEEEEecCCe--EEEEEC------CCCEEEEEEc
Confidence 344567776665 3567889998876544332211 234456777876543 222211 2346777777
Q ss_pred CCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe
Q 043816 184 KSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF 260 (378)
Q Consensus 184 ~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~ 260 (378)
....-+.+. . ...... .++.+ +|.+||...... ...|.++++.......+.. .... . -..++..
T Consensus 109 ~g~~~~~~~-~--~~~~~P-~~i~vd~~~g~lyv~~~~~~----~~~I~~~~~dg~~~~~~~~-~~~~---~-P~gia~d 175 (267)
T 1npe_A 109 DGTQRRVLF-D--TGLVNP-RGIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRILAQ-DNLG---L-PNGLTFD 175 (267)
T ss_dssp TSCSCEEEE-C--SSCSSE-EEEEEETTTTEEEEEECCSS----SCEEEEEETTSCCCEEEEC-TTCS---C-EEEEEEE
T ss_pred CCCCEEEEE-E--CCCCCc-cEEEEeeCCCEEEEEECCCC----CcEEEEEecCCCCcEEEEE-CCCC---C-CcEEEEc
Confidence 644322222 1 111111 13443 589999864311 2358889987654433311 1111 1 2223333
Q ss_pred --CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 261 --SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 261 --~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
++.|+++..... .|....++..- ....+.. ...|.++..+++.|++.. .....+..+|
T Consensus 176 ~~~~~lyv~d~~~~--~I~~~~~~g~~-~~~~~~~-------~~~P~gi~~d~~~lyva~----------~~~~~v~~~d 235 (267)
T 1npe_A 176 AFSSQLCWVDAGTH--RAECLNPAQPG-RRKVLEG-------LQYPFAVTSYGKNLYYTD----------WKTNSVIAMD 235 (267)
T ss_dssp TTTTEEEEEETTTT--EEEEEETTEEE-EEEEEEC-------CCSEEEEEEETTEEEEEE----------TTTTEEEEEE
T ss_pred CCCCEEEEEECCCC--EEEEEecCCCc-eEEEecC-------CCCceEEEEeCCEEEEEE----------CCCCeEEEEe
Confidence 467888776544 55555554311 1111111 122445545567788874 3567999999
Q ss_pred CCCCeEEEEE
Q 043816 339 LQNQRAAGQV 348 (378)
Q Consensus 339 ~~t~~~~~~v 348 (378)
+++++..+.|
T Consensus 236 ~~~g~~~~~i 245 (267)
T 1npe_A 236 LAISKEMDTF 245 (267)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCCceEEE
Confidence 9988766244
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=91.87 E-value=7.2 Score=35.40 Aligned_cols=196 Identities=15% Similarity=0.105 Sum_probs=102.9
Q ss_pred eecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 105 IDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
++..++.++....+..+.|||..+++...+-.... ......+.+.+.+ .+-+++- ....+.+|+..
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~-~~l~~~~--------~dg~i~iwd~~ 164 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDE-----STYVASVKWSHDG-SFLSVGL--------GNGLVDIYDVE 164 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCT-----TCCEEEEEECTTS-SEEEEEE--------TTSCEEEEETT
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCC-----CCCEEEEEECCCC-CEEEEEC--------CCCeEEEEECc
Confidence 33333444444457789999999998876544321 2345666777643 3333222 23468888888
Q ss_pred CCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCce--EeeecCCCCCCCCCCCeeEEEEe-C
Q 043816 185 SNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE--FFEVPLPHLENRDSGNLMYMGNF-S 261 (378)
Q Consensus 185 t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~l~~~-~ 261 (378)
++.-...- .. ....-.++.++|.+...+..+ ..|..+|+.... ...+...... -..+... +
T Consensus 165 ~~~~~~~~---~~-~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~------v~~~~~~~~ 228 (401)
T 4aez_A 165 SQTKLRTM---AG-HQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQGHSSE------VCGLAWRSD 228 (401)
T ss_dssp TCCEEEEE---CC-CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSSC------EEEEEECTT
T ss_pred CCeEEEEe---cC-CCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcCCCCC------eeEEEEcCC
Confidence 76532221 10 011112455567654444332 358899987432 2222221111 2223332 5
Q ss_pred CeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
|++.+++..+. .+.+|.++. ......+... ......+.+.+++..++... .+..++.+..||+++
T Consensus 229 ~~~l~s~~~d~--~v~iwd~~~-~~~~~~~~~~----~~~v~~~~~~p~~~~ll~~~--------~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 229 GLQLASGGNDN--VVQIWDARS-SIPKFTKTNH----NAAVKAVAWCPWQSNLLATG--------GGTMDKQIHFWNAAT 293 (401)
T ss_dssp SSEEEEEETTS--CEEEEETTC-SSEEEEECCC----SSCCCEEEECTTSTTEEEEE--------CCTTTCEEEEEETTT
T ss_pred CCEEEEEeCCC--eEEEccCCC-CCccEEecCC----cceEEEEEECCCCCCEEEEe--------cCCCCCEEEEEECCC
Confidence 66666666655 899999876 1122223220 11223356666555455431 002478899999988
Q ss_pred CeEE
Q 043816 342 QRAA 345 (378)
Q Consensus 342 ~~~~ 345 (378)
++..
T Consensus 294 ~~~~ 297 (401)
T 4aez_A 294 GARV 297 (401)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 8766
No 49
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=91.85 E-value=7.7 Score=35.69 Aligned_cols=185 Identities=7% Similarity=-0.015 Sum_probs=98.4
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
..++++|..|++...+...+ .....+.+.|.++ + ++.... ......+.+++..++..+.+. ....
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~-------~~~~~~~~spdg~-~-la~~~~----~~g~~~i~~~d~~~~~~~~l~-~~~~- 267 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFP-------RHNGAPAFSPDGS-K-LAFALS----KTGSLNLYVMDLASGQIRQVT-DGRS- 267 (415)
T ss_dssp CEEEEEETTTCCEEEEECCS-------SCEEEEEECTTSS-E-EEEEEC----TTSSCEEEEEETTTCCEEECC-CCSS-
T ss_pred cEEEEEECCCCcEEEeecCC-------CcccCEEEcCCCC-E-EEEEEe----cCCCceEEEEECCCCCEEeCc-CCCC-
Confidence 48999999999988765432 2344566666543 2 222221 112457888898888765554 2111
Q ss_pred ccCCCCceEE--CCe-eEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCCeEEEE-EecCCC
Q 043816 199 FSHPRDGTFA--RGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSGCLYFS-CFCDYP 273 (378)
Q Consensus 199 ~~~~~~~v~~--~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G~L~l~-~~~~~~ 273 (378)
....+.+ +|. |++..... ....|..+|+.+.....+..... . ...+.. .+|+..+. ......
T Consensus 268 ---~~~~~~~spdg~~l~~~s~~~----g~~~i~~~d~~~~~~~~l~~~~~-----~-~~~~~~spdG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 268 ---NNTEPTWFPDSQNLAFTSDQA----GRPQVYKVNINGGAPQRITWEGS-----Q-NQDADVSSDGKFMVMVSSNGGQ 334 (415)
T ss_dssp ---CEEEEEECTTSSEEEEEECTT----SSCEEEEEETTSSCCEECCCSSS-----E-EEEEEECTTSSEEEEEEECSSC
T ss_pred ---cccceEECCCCCEEEEEECCC----CCcEEEEEECCCCCEEEEecCCC-----c-ccCeEECCCCCEEEEEECcCCc
Confidence 0012222 565 44443221 12358888998776544422111 0 222332 35654444 333232
Q ss_pred CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 274 EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 274 ~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
..|.+|.++. .. ..+... . ....+++.++|..|+.... + .....|+.+|++++..+ ++
T Consensus 335 ~~i~~~d~~~~~~---~~l~~~----~-~~~~~~~spdg~~l~~~s~----~----~~~~~l~~~d~~g~~~~-~l 393 (415)
T 2hqs_A 335 QHIAKQDLATGGV---QVLSST----F-LDETPSLAPNGTMVIYSSS----Q----GMGSVLNLVSTDGRFKA-RL 393 (415)
T ss_dssp EEEEEEETTTCCE---EECCCS----S-SCEEEEECTTSSEEEEEEE----E----TTEEEEEEEETTSCCEE-EC
T ss_pred eEEEEEECCCCCE---EEecCC----C-CcCCeEEcCCCCEEEEEEc----C----CCccEEEEEECCCCcEE-Ee
Confidence 3677777765 32 122221 1 2334567789998877731 0 11237999999998888 54
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.85 E-value=7.5 Score=35.57 Aligned_cols=201 Identities=13% Similarity=0.171 Sum_probs=104.3
Q ss_pred eeEee-cccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEE
Q 043816 102 TPIID-TCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAV 180 (378)
Q Consensus 102 ~~~~~-s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~v 180 (378)
..+++ |.+++|.+.. ++.++|||..|++...+-..... ...+..+.+.+.+ .|-+++- ....+.+
T Consensus 108 ~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~----~~~V~sv~fspdg-~~lasgs--------~Dg~v~i 173 (420)
T 4gga_A 108 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP----GEYISSVAWIKEG-NYLAVGT--------SSAEVQL 173 (420)
T ss_dssp CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST----TCCEEEEEECTTS-SEEEEEE--------TTSCEEE
T ss_pred ceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC----CCcEEEEEECCCC-CEEEEEE--------CCCeEEE
Confidence 34444 4466665554 67899999999998765443322 2345667777653 4433322 2456889
Q ss_pred EEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEE-EE
Q 043816 181 YSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYM-GN 259 (378)
Q Consensus 181 yss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l-~~ 259 (378)
++.+++.-...- .. ......++..+|.+-..+..+ ..+..+|..........+..... . ...+ ..
T Consensus 174 Wd~~~~~~~~~~---~~-h~~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h~~---~-~~~~~~~ 239 (420)
T 4gga_A 174 WDVQQQKRLRNM---TS-HSARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHSQ---E-VCGLRWA 239 (420)
T ss_dssp EETTTTEEEEEE---CC-CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSS---C-EEEEEEC
T ss_pred EEcCCCcEEEEE---eC-CCCceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEeccccc---c-eeeeeec
Confidence 998876422111 10 011112455566544333322 24777787654332221111111 0 2222 23
Q ss_pred eCCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecC-CEEEEeeccCCCccccccCCcEEE
Q 043816 260 FSGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSG-DKVLVDKFLYDEDEDEGINKWELD 335 (378)
Q Consensus 260 ~~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~l~ 335 (378)
.+|+..+....+. .+.||.... .+......... ......++..+.+ .++.... +..++.+.
T Consensus 240 ~~g~~l~s~~~D~--~v~i~~~~~~~~~~~~~~~~~~~----~~~V~~~~~~p~~~~~la~~~---------gs~D~~I~ 304 (420)
T 4gga_A 240 PDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQH----QGAVKAVAWCPWQSNVLATGG---------GTSDRHIR 304 (420)
T ss_dssp TTSSEEEEEETTS--CEEEEESSCCSSCSCCSEEECCC----SSCEEEEEECTTCTTEEEEEE---------CTTTCEEE
T ss_pred CCCCeeeeeeccc--cceEEeeccccccceeeeeeccc----CCceeeeeeCCCcccEEEEEe---------ecCCCEEE
Confidence 3566655555555 899998865 23333322220 1122334444433 4444442 13567899
Q ss_pred EEECCCCeEE
Q 043816 336 WYDLQNQRAA 345 (378)
Q Consensus 336 ~yd~~t~~~~ 345 (378)
+||+++++..
T Consensus 305 iwd~~t~~~~ 314 (420)
T 4gga_A 305 IWNVCSGACL 314 (420)
T ss_dssp EEETTTTEEE
T ss_pred EEeCCccccc
Confidence 9999998877
No 51
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=91.58 E-value=4 Score=35.32 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=71.8
Q ss_pred EECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCce
Q 043816 207 FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESW 285 (378)
Q Consensus 207 ~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W 285 (378)
+.+|.+|.-++... ...|..+|+++.+- ..+++|.... -.-+...+++|+++...+. .+.++-.+ .-
T Consensus 50 ~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~F-----geGit~~g~~ly~ltw~~~--~v~v~D~~-t~ 117 (262)
T 3nol_A 50 YRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYF-----GEGISDWKDKIVGLTWKNG--LGFVWNIR-NL 117 (262)
T ss_dssp EETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCC-----EEEEEEETTEEEEEESSSS--EEEEEETT-TC
T ss_pred EECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccc-----eeEEEEeCCEEEEEEeeCC--EEEEEECc-cC
Confidence 44777777665432 22599999987655 5567764321 2336667889999866544 44444333 44
Q ss_pred eeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEE
Q 043816 286 TKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 286 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
.++.+++.+. ...++..+|+.+++.+ .+..+.++|++|.+..+.|.+
T Consensus 118 ~~~~ti~~~~-------eG~glt~dg~~L~~Sd-----------Gs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 118 RQVRSFNYDG-------EGWGLTHNDQYLIMSD-----------GTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp CEEEEEECSS-------CCCCEEECSSCEEECC-----------SSSEEEEECTTTCSEEEEEEC
T ss_pred cEEEEEECCC-------CceEEecCCCEEEEEC-----------CCCeEEEEcCCCCeEEEEEEe
Confidence 5566777621 1234445777777772 467899999999777756665
No 52
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=90.97 E-value=8.4 Score=34.43 Aligned_cols=195 Identities=13% Similarity=0.066 Sum_probs=98.0
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
++.++....+..+.|||..|++.......... .+...+..+.+.+.+. + ++... ....+.+++.+++.=
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~--~H~~~V~~v~~spdg~-~-l~sgs-------~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKY--EHDDIVSTVSVLSSGT-Q-AVSGS-------KDICIKVWDLAQQVV 161 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEE--CCSSCEEEEEECTTSS-E-EEEEE-------TTSCEEEEETTTTEE
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeecccc--CCCCCEEEEEECCCCC-E-EEEEe-------CCCeEEEEECCCCcE
Confidence 56666555677899999999876543321110 1123455666766543 3 22221 234678888877642
Q ss_pred EEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe--CCe
Q 043816 189 RRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF--SGC 263 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~--~G~ 263 (378)
+. .+.. ....-.++.+ +|.-+.+....+. .|..+|+.+.+. ..+..+.... . -..+... +++
T Consensus 162 --~~-~~~~-h~~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~---~-~~~~~~~p~~~~ 228 (344)
T 4gqb_B 162 --LS-SYRA-HAAQVTCVAASPHKDSVFLSCSEDN-----RILLWDTRCPKPASQIGCSAPGY---L-PTSLAWHPQQSE 228 (344)
T ss_dssp --EE-EECC-CSSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTSSSCEEECC----CC---C-EEEEEECSSCTT
T ss_pred --EE-EEcC-cCCceEEEEecCCCCCceeeecccc-----ccccccccccceeeeeecceeec---c-ceeeeecCCCCc
Confidence 11 1110 0000012222 3432333333322 388899976543 3333222211 0 2223332 456
Q ss_pred EEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCE-EEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 264 LYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDK-VLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~-vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
+.+.+..+. .+.||.++. ...+..+... .....-+++.++|+. |.-. ..++.+.+||.+++
T Consensus 229 ~l~sg~~dg--~v~~wd~~~-~~~~~~~~~h----~~~v~~v~fsp~g~~~lasg-----------s~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 229 VFVFGDENG--TVSLVDTKS-TSCVLSSAVH----SQCVTGLVFSPHSVPFLASL-----------SEDCSLAVLDSSLS 290 (344)
T ss_dssp EEEEEETTS--EEEEEESCC---CCEEEECC----SSCEEEEEECSSSSCCEEEE-----------ETTSCEEEECTTCC
T ss_pred ceEEeccCC--cEEEEECCC-CcEEEEEcCC----CCCEEEEEEccCCCeEEEEE-----------eCCCeEEEEECCCC
Confidence 666555555 899998865 1222333320 112334566677754 4444 36788999999998
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
++.
T Consensus 291 ~~~ 293 (344)
T 4gqb_B 291 ELF 293 (344)
T ss_dssp EEE
T ss_pred cEE
Confidence 876
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=90.54 E-value=9.4 Score=34.30 Aligned_cols=185 Identities=10% Similarity=0.068 Sum_probs=96.1
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
+|.++....+..+.++|..+++....-... ......+.+.+... +-++ .. ....+.+|+..++.-
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~l~~-~~-------~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGH------HGPISVLEFNDTNK-LLLS-AS-------DDGTLRIWHGGNGNS 281 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSCSEEECCC------SSCEEEEEEETTTT-EEEE-EE-------TTSCEEEECSSSBSC
T ss_pred CCEEEEEcCCCeEEEEEcCCCceeeeeccC------CCceEEEEECCCCC-EEEE-Ec-------CCCEEEEEECCCCcc
Confidence 566666555678999999887654322211 23455667776543 2222 21 234677888776532
Q ss_pred EEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-CCeE
Q 043816 189 RRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF-SGCL 264 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~-~G~L 264 (378)
...- ... ...-.++.+ +| +.+....+ ..|..+|+.+.+... +...... -..+... +|++
T Consensus 282 ~~~~-~~~---~~~i~~~~~~~~~--~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~------i~~~~~s~~~~~ 344 (425)
T 1r5m_A 282 QNCF-YGH---SQSIVSASWVGDD--KVISCSMD-----GSVRLWSLKQNTLLALSIVDGVP------IFAGRISQDGQK 344 (425)
T ss_dssp SEEE-CCC---SSCEEEEEEETTT--EEEEEETT-----SEEEEEETTTTEEEEEEECTTCC------EEEEEECTTSSE
T ss_pred ceEe-cCC---CccEEEEEECCCC--EEEEEeCC-----CcEEEEECCCCcEeEecccCCcc------EEEEEEcCCCCE
Confidence 2111 000 000012222 45 33333332 359999997765433 3322111 2223322 5666
Q ss_pred EEEEecCCCCcEEEEEEcC-c-----e-------------eeeEEEecCccccce-eeEEEEEeecCCEEEEeeccCCCc
Q 043816 265 YFSCFCDYPEPVDIWIMKE-S-----W-------------TKVFSFAGGVFGIFT-YAKALAYSKSGDKVLVDKFLYDED 324 (378)
Q Consensus 265 ~l~~~~~~~~~i~iW~l~~-~-----W-------------~~~~~i~~~~~~~~~-~~~~~~~~~~g~~vl~~~~~~~~~ 324 (378)
.++...+. .+.+|.++. . + ..+..+.... .. ...-+.+.++|..|+..
T Consensus 345 l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~------- 412 (425)
T 1r5m_A 345 YAVAFMDG--QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ---DNDYIFDLSWNCAGNKISVA------- 412 (425)
T ss_dssp EEEEETTS--CEEEEECHHHHC--------------CEECCEEEEECCTT---CCCCEEEEEECTTSSEEEEE-------
T ss_pred EEEEECCC--eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc---cCCceEEEEccCCCceEEEE-------
Confidence 66666555 899999875 2 0 1223332210 01 34446667788877777
Q ss_pred cccccCCcEEEEEECCC
Q 043816 325 EDEGINKWELDWYDLQN 341 (378)
Q Consensus 325 ~~~~~~~~~l~~yd~~t 341 (378)
..++.+.+||++.
T Consensus 413 ----~~dg~i~iw~~~g 425 (425)
T 1r5m_A 413 ----YSLQEGSVVAIPG 425 (425)
T ss_dssp ----ESSSCCEEEECCC
T ss_pred ----ecCceEEEEeecC
Confidence 4778899998863
No 54
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=90.51 E-value=7.1 Score=32.86 Aligned_cols=189 Identities=12% Similarity=0.094 Sum_probs=96.5
Q ss_pred cccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 107 TCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
..+|-+.+......++++||-++....++... .....++.+|+.+. +..... ....+.+|+.++.
T Consensus 75 ~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~------~~~p~~i~~~~~g~---l~v~~~------~~~~i~~~~~~~~ 139 (270)
T 1rwi_B 75 DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG------LNYPEGLAVDTQGA---VYVADR------GNNRVVKLAAGSK 139 (270)
T ss_dssp CTTCCEEEEETTTEEEEECTTCSCCEECCCCS------CSSEEEEEECTTCC---EEEEEG------GGTEEEEECTTCC
T ss_pred CCCCCEEEEcCCCEEEEEeCCCceEeeeecCC------cCCCcceEECCCCC---EEEEEC------CCCEEEEEECCCc
Confidence 33565555544568999999888766664322 22345667776442 222211 1345666665554
Q ss_pred ceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCe
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGC 263 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~ 263 (378)
...... ....... .++.+ +|.+|+..... ..|..||..+.......... .. . -..+... +|.
T Consensus 140 ~~~~~~---~~~~~~p-~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~-~~---~-p~~i~~d~~g~ 204 (270)
T 1rwi_B 140 TQTVLP---FTGLNDP-DGVAVDNSGNVYVTDTDN------NRVVKLEAESNNQVVLPFTD-IT---A-PWGIAVDEAGT 204 (270)
T ss_dssp SCEECC---CCSCCSC-CCEEECTTCCEEEEEGGG------TEEEEECTTTCCEEECCCSS-CC---S-EEEEEECTTCC
T ss_pred eeEeec---cccCCCc-eeEEEeCCCCEEEEECCC------CEEEEEecCCCceEeecccC-CC---C-ceEEEECCCCC
Confidence 433221 1111111 23444 58877654332 25999999876544332211 11 1 2234433 567
Q ss_pred EEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 264 LYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
|++...... .+.+|..+.. ....+.. .......-+++.++|. |++.. .....+..|++...+
T Consensus 205 l~v~~~~~~--~v~~~~~~~~--~~~~~~~---~~~~~p~~i~~~~~g~-l~v~~----------~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 205 VYVTEHNTN--QVVKLLAGST--TSTVLPF---TGLNTPLAVAVDSDRT-VYVAD----------RGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEETTTS--CEEEECTTCS--CCEECCC---CSCSCEEEEEECTTCC-EEEEE----------GGGTEEEEECCCGGG
T ss_pred EEEEECCCC--cEEEEcCCCC--cceeecc---CCCCCceeEEECCCCC-EEEEE----------CCCCEEEEEcCCCcc
Confidence 777765444 6666665441 1111111 1122234466666776 55553 356788888877654
No 55
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=90.34 E-value=8.8 Score=33.64 Aligned_cols=204 Identities=8% Similarity=-0.054 Sum_probs=106.3
Q ss_pred eecccceEEeec-CCceEEEEcCCCcceee-cCCCCCCCC--CCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEE
Q 043816 105 IDTCNGLIALKN-GENDIALWNPSTKKHVL-LPKFWSDFD--DYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAV 180 (378)
Q Consensus 105 ~~s~~Gll~~~~-~~~~~~V~NP~T~~~~~-LP~~~~~~~--~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~v 180 (378)
++..+..+.+.. ....+.++|+.|++... ++....... .......++.+++.++. ++.... . ....+.+
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~-~----~~~~i~~ 168 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT--VYISGI-G----KESVIWV 168 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEE-S----SSCEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE--EEEEec-C----CCceEEE
Confidence 334445454444 45789999999988743 333221110 00223456778876553 222221 0 2356888
Q ss_pred EEcCCCceEEeeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEE
Q 043816 181 YSLKSNSSRRIRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMG 258 (378)
Q Consensus 181 yss~t~~W~~~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~ 258 (378)
++..++.=...- +........ .+.-+|...+.+... ..|..+|+.+.+.. .+..+..... .. ...+.
T Consensus 169 ~d~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~-~~-~~~~~ 237 (353)
T 3vgz_A 169 VDGGNIKLKTAI---QNTGKMSTGLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDGKE-HF-FINIS 237 (353)
T ss_dssp EETTTTEEEEEE---CCCCTTCCCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSSSC-CC-EEEEE
T ss_pred EcCCCCceEEEe---cCCCCccceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCCCC-cc-cceEE
Confidence 888776422211 110111111 233356544443322 35889999887653 3454332111 11 22233
Q ss_pred Ee-CCe-EEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEE
Q 043816 259 NF-SGC-LYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDW 336 (378)
Q Consensus 259 ~~-~G~-L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~ 336 (378)
.. +|+ |++...... .+.+|.++. ......+.... . .-+++.++|+.+++.. ..++.+..
T Consensus 238 ~s~dg~~l~~~~~~~~--~v~~~d~~~-~~~~~~~~~~~---~---~~~~~s~dg~~l~v~~----------~~~~~v~~ 298 (353)
T 3vgz_A 238 LDTARQRAFITDSKAA--EVLVVDTRN-GNILAKVAAPE---S---LAVLFNPARNEAYVTH----------RQAGKVSV 298 (353)
T ss_dssp EETTTTEEEEEESSSS--EEEEEETTT-CCEEEEEECSS---C---CCEEEETTTTEEEEEE----------TTTTEEEE
T ss_pred ECCCCCEEEEEeCCCC--EEEEEECCC-CcEEEEEEcCC---C---ceEEECCCCCEEEEEE----------CCCCeEEE
Confidence 33 454 555443333 888887765 22333444311 0 1266778888777773 35789999
Q ss_pred EECCCCeEE
Q 043816 337 YDLQNQRAA 345 (378)
Q Consensus 337 yd~~t~~~~ 345 (378)
||+++++..
T Consensus 299 ~d~~~~~~~ 307 (353)
T 3vgz_A 299 IDAKSYKVV 307 (353)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999998877
No 56
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=90.24 E-value=9.3 Score=33.77 Aligned_cols=193 Identities=11% Similarity=-0.022 Sum_probs=101.0
Q ss_pred ccceEEe-ecCCceEEEEcCCCccee-ecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 108 CNGLIAL-KNGENDIALWNPSTKKHV-LLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 108 ~~Gll~~-~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
.++.+.+ ....+.+.|+|+.|++.. .++... ...++.+++. . ++..... ....+.+++..+
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~--------~p~~i~~~~~--g-~lyv~~~------~~~~v~~iD~~t 114 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT--------SPRYIHFLSD--E-KAYVTQI------WDYRIFIINPKT 114 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS--------SEEEEEEEET--T-EEEEEEB------SCSEEEEEETTT
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC--------CCcEEEEeCC--C-eEEEEEC------CCCeEEEEECCC
Confidence 3454433 334568999999999874 464321 1233444443 2 4433321 135788899888
Q ss_pred CceE-EeeccCCc-cccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEeCC
Q 043816 186 NSSR-RIRVDFPY-YFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNFSG 262 (378)
Q Consensus 186 ~~W~-~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~~G 262 (378)
++-. .++..... .......-+..+|.+|...... ...|.++|+++.+.. .++...... .+. ...+|
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~-----~~~v~viD~~t~~~~~~i~~g~~p~-----~i~-~~~dG 183 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY-----QNRILKIDTETDKVVDELTIGIQPT-----SLV-MDKYN 183 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT-----CCEEEEEETTTTEEEEEEECSSCBC-----CCE-ECTTS
T ss_pred CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC-----CCEEEEEECCCCeEEEEEEcCCCcc-----ceE-EcCCC
Confidence 7533 22211100 0001222233567777664311 135999999987653 344422111 111 23368
Q ss_pred eEEEEEecCC--------CCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEE
Q 043816 263 CLYFSCFCDY--------PEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWEL 334 (378)
Q Consensus 263 ~L~l~~~~~~--------~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l 334 (378)
++++++.... ...+.++..+. -....++..+. .....-+++.++|+.+++. +. .+
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~---g~~p~~la~~~d~~~lyv~------------~~-~v 246 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKL---GDWPSEVQLNGTRDTLYWI------------NN-DI 246 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCT---TCCCEEEEECTTSCEEEEE------------SS-SE
T ss_pred CEEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCC---CCCceeEEEecCCCEEEEE------------cc-EE
Confidence 8877765431 12455555443 12233344310 1123446777778888887 33 88
Q ss_pred EEEECCCCeEE
Q 043816 335 DWYDLQNQRAA 345 (378)
Q Consensus 335 ~~yd~~t~~~~ 345 (378)
+.+|++++++.
T Consensus 247 ~~~d~~t~~~~ 257 (328)
T 3dsm_A 247 WRMPVEADRVP 257 (328)
T ss_dssp EEEETTCSSCC
T ss_pred EEEECCCCcee
Confidence 89999988764
No 57
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=90.01 E-value=8.6 Score=33.26 Aligned_cols=113 Identities=8% Similarity=-0.052 Sum_probs=69.9
Q ss_pred CeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeee
Q 043816 210 GHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKV 288 (378)
Q Consensus 210 G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~ 288 (378)
|.+|.-.+.. ....|.++|+++.+- ..+++|.... -.-++..+++|+++..... .+.++-.+ .-..+
T Consensus 32 g~Lyvstg~~----~~s~v~~iD~~tg~v~~~i~l~~~~f-----geGi~~~g~~lyv~t~~~~--~v~viD~~-t~~v~ 99 (266)
T 2iwa_A 32 DTLFESTGLY----GRSSVRQVALQTGKVENIHKMDDSYF-----GEGLTLLNEKLYQVVWLKN--IGFIYDRR-TLSNI 99 (266)
T ss_dssp TEEEEEECST----TTCEEEEEETTTCCEEEEEECCTTCC-----EEEEEEETTEEEEEETTCS--EEEEEETT-TTEEE
T ss_pred CeEEEECCCC----CCCEEEEEECCCCCEEEEEecCCCcc-----eEEEEEeCCEEEEEEecCC--EEEEEECC-CCcEE
Confidence 6777655421 123599999987654 4566664322 2335555778888876444 54444333 44566
Q ss_pred EEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 289 FSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 289 ~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
.+|+.+ .+ ...++..+|+.+++.+ .+..+.++|++|.+..+.|.+.
T Consensus 100 ~~i~~g-~~-----~g~glt~Dg~~l~vs~-----------gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 100 KNFTHQ-MK-----DGWGLATDGKILYGSD-----------GTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp EEEECC-SS-----SCCEEEECSSSEEEEC-----------SSSEEEEECTTTCCEEEEEECE
T ss_pred EEEECC-CC-----CeEEEEECCCEEEEEC-----------CCCeEEEEECCCCcEEEEEEEC
Confidence 777763 11 1244556788888772 5679999999998766465543
No 58
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=89.96 E-value=12 Score=34.58 Aligned_cols=65 Identities=8% Similarity=0.014 Sum_probs=42.0
Q ss_pred CeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
|++.+.+..+. .+.+|.+.. .-........ .....-+++. +|..++.. ..++.+.+||++
T Consensus 210 ~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~h-----~~~v~~~~~s-d~~~l~s~-----------~~d~~v~vwd~~ 270 (450)
T 2vdu_B 210 HQFIITSDRDE--HIKISHYPQCFIVDKWLFGH-----KHFVSSICCG-KDYLLLSA-----------GGDDKIFAWDWK 270 (450)
T ss_dssp CEEEEEEETTS--CEEEEEESCTTCEEEECCCC-----SSCEEEEEEC-STTEEEEE-----------ESSSEEEEEETT
T ss_pred CcEEEEEcCCC--cEEEEECCCCceeeeeecCC-----CCceEEEEEC-CCCEEEEE-----------eCCCeEEEEECC
Confidence 66666666555 999999976 2211111011 1123345666 88888877 478899999999
Q ss_pred CCeEE
Q 043816 341 NQRAA 345 (378)
Q Consensus 341 t~~~~ 345 (378)
+++..
T Consensus 271 ~~~~~ 275 (450)
T 2vdu_B 271 TGKNL 275 (450)
T ss_dssp TCCEE
T ss_pred CCcEe
Confidence 98866
No 59
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=89.81 E-value=7.5 Score=35.72 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=74.2
Q ss_pred CCeeEEEEEeCCCCCCCCEEEEEECCCceEeee---c-CC-----CCCCCCCCCeeEEEEeCCeEEEEEecC-----CCC
Q 043816 209 RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV---P-LP-----HLENRDSGNLMYMGNFSGCLYFSCFCD-----YPE 274 (378)
Q Consensus 209 ~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i---~-~P-----~~~~~~~~~~~~l~~~~G~L~l~~~~~-----~~~ 274 (378)
+|.++|....+ .+.++|+.++.-..+ . +. ............+-.-.++||++.... ...
T Consensus 237 dG~~~~vs~~g-------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~ 309 (386)
T 3sjl_D 237 AGRLVWPTYTG-------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 309 (386)
T ss_dssp TTEEEEEBTTS-------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred CCcEEEEeCCC-------EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence 78888876533 499999987643222 1 00 011000000122222246788775421 112
Q ss_pred cEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCC-EEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEec
Q 043816 275 PVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGD-KVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHG 352 (378)
Q Consensus 275 ~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~ 352 (378)
.=+||+++- .+..+.+|+.. ....-+++..+|. .++..+ ..++.+.+||.+|++..++|...+
T Consensus 310 ~~~V~viD~~t~kv~~~i~vg-----~~~~~lavs~D~~~~ly~tn----------~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 310 SRFVVVLDAKTGERLAKFEMG-----HEIDSINVSQDEKPLLYALS----------TGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEEEEETTTCCEEEEEEEE-----EEECEEEECSSSSCEEEEEE----------TTTTEEEEEETTTCCEEEEECCCC
T ss_pred CCEEEEEECCCCeEEEEEECC-----CCcceEEECCCCCeEEEEEc----------CCCCeEEEEECCCCcEEEEecCCC
Confidence 578999987 88888888872 1223477788886 566642 357899999999998885555544
Q ss_pred cCC
Q 043816 353 VPQ 355 (378)
Q Consensus 353 ~~~ 355 (378)
.+.
T Consensus 375 ~p~ 377 (386)
T 3sjl_D 375 HGP 377 (386)
T ss_dssp SSC
T ss_pred CCc
Confidence 444
No 60
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=89.53 E-value=5.5 Score=34.49 Aligned_cols=111 Identities=11% Similarity=-0.026 Sum_probs=68.0
Q ss_pred ECCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCcee
Q 043816 208 ARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWT 286 (378)
Q Consensus 208 ~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~ 286 (378)
.+|.||.-++.. ..|.++|+++.+- ..+ +|.... -.-+...+++|+++...+. .+.++-.+ .-.
T Consensus 63 ~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~F-----geGit~~g~~Ly~ltw~~~--~v~V~D~~-Tl~ 127 (268)
T 3nok_A 63 HQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNIF-----AEGLASDGERLYQLTWTEG--LLFTWSGM-PPQ 127 (268)
T ss_dssp ETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTCC-----EEEEEECSSCEEEEESSSC--EEEEEETT-TTE
T ss_pred ECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCcc-----eeEEEEeCCEEEEEEccCC--EEEEEECC-cCc
Confidence 345666544332 2399999987654 445 554321 2235667789998865544 44444332 445
Q ss_pred eeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 287 KVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 287 ~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
++.+|+.... ..++..+|+.+++.+ .+..+.++|++|.+..++|.+.
T Consensus 128 ~~~ti~~~~e-------GwGLt~Dg~~L~vSd-----------Gs~~l~~iDp~T~~v~~~I~V~ 174 (268)
T 3nok_A 128 RERTTRYSGE-------GWGLCYWNGKLVRSD-----------GGTMLTFHEPDGFALVGAVQVK 174 (268)
T ss_dssp EEEEEECSSC-------CCCEEEETTEEEEEC-----------SSSEEEEECTTTCCEEEEEECE
T ss_pred EEEEEeCCCc-------eeEEecCCCEEEEEC-----------CCCEEEEEcCCCCeEEEEEEeC
Confidence 5667776211 234445778888873 4789999999998777566653
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=89.45 E-value=10 Score=32.98 Aligned_cols=96 Identities=9% Similarity=0.089 Sum_probs=51.0
Q ss_pred EEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecC-----ccccce
Q 043816 227 LIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGG-----VFGIFT 300 (378)
Q Consensus 227 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~-----~~~~~~ 300 (378)
.|..+|+.+.... .+.... . -..+....+...++...+. .+.||.++.. .....+... ......
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~------~-v~~~~~~~~~~~~~~~~d~--~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~ 307 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLDGGD------I-INALCFSPNRYWLCAATGP--SIKIWDLEGK-IIVDELKQEVISTSSKAEPP 307 (340)
T ss_dssp EEEEEETTTTEEEEEEECSS------C-EEEEEECSSSSEEEEEETT--EEEEEETTTT-EEEEEECCC-------CCCC
T ss_pred eEEEEEeccCceeeeecCCc------e-EEeeecCCCCceeeccCCC--EEEEEECCCC-eEEEeccccceeeeccCCCC
Confidence 4888998775432 232211 1 2223333444444555554 8999988760 111122210 001112
Q ss_pred eeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 301 YAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 301 ~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
...-+++.++|..|+.. ..++.+.+||++|++
T Consensus 308 ~v~~l~~s~dg~~l~sg-----------s~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAG-----------YTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEECTTSSEEEEE-----------ETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCCEEEEE-----------eCCCEEEEEeCCCcC
Confidence 23346677888887777 478899999998864
No 62
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=89.13 E-value=10 Score=32.72 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=96.9
Q ss_pred EEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEe
Q 043816 112 IALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRI 191 (378)
Q Consensus 112 l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~ 191 (378)
|+....+..+.||+..+++....-... ......+.+.+.++ +- +... ....+.+|+.+++.-...
T Consensus 38 l~s~~~dg~i~iw~~~~~~~~~~~~~h------~~~v~~~~~~~~~~-~l-~s~~-------~d~~i~vwd~~~~~~~~~ 102 (312)
T 4ery_A 38 LASSSADKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSN-LL-VSAS-------DDKTLKIWDVSSGKCLKT 102 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTTSS-EE-EEEE-------TTSEEEEEETTTCCEEEE
T ss_pred EEEeeCCCeEEEEeCCCcccchhhccC------CCceEEEEEcCCCC-EE-EEEC-------CCCEEEEEECCCCcEEEE
Confidence 333334567889998888765432221 23455667776542 22 2221 245788888877642211
Q ss_pred eccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEE-eCCeEEEE
Q 043816 192 RVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGN-FSGCLYFS 267 (378)
Q Consensus 192 ~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~-~~G~L~l~ 267 (378)
- .... ..-.++.+ +|.+...+ ..+ ..|..+|+.+.+. ..+...... -..+.. .+|++.++
T Consensus 103 ~-~~~~---~~v~~~~~~~~~~~l~s~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 103 L-KGHS---NYVFCCNFNPQSNLIVSG-SFD-----ESVRIWDVKTGKCLKTLPAHSDP------VSAVHFNRDGSLIVS 166 (312)
T ss_dssp E-ECCS---SCEEEEEECSSSSEEEEE-ETT-----SCEEEEETTTCCEEEEECCCSSC------EEEEEECTTSSEEEE
T ss_pred E-cCCC---CCEEEEEEcCCCCEEEEE-eCC-----CcEEEEECCCCEEEEEecCCCCc------EEEEEEcCCCCEEEE
Confidence 1 0000 00001112 23332222 222 2388899876543 223221111 222322 25676666
Q ss_pred EecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 268 CFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 268 ~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+..+. .+.+|.+... .....+... .......+.+.++|..++.. ..++.+..||+++++..
T Consensus 167 ~~~d~--~i~~wd~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~-----------~~d~~i~iwd~~~~~~~ 227 (312)
T 4ery_A 167 SSYDG--LCRIWDTASG-QCLKTLIDD---DNPPVSFVKFSPNGKYILAA-----------TLDNTLKLWDYSKGKCL 227 (312)
T ss_dssp EETTS--CEEEEETTTC-CEEEEECCS---SCCCEEEEEECTTSSEEEEE-----------ETTTEEEEEETTTTEEE
T ss_pred EeCCC--cEEEEECCCC-ceeeEEecc---CCCceEEEEECCCCCEEEEE-----------cCCCeEEEEECCCCcEE
Confidence 66655 8999998761 112222211 01123346677888888777 47789999999998766
No 63
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=88.67 E-value=12 Score=32.74 Aligned_cols=209 Identities=9% Similarity=-0.060 Sum_probs=102.0
Q ss_pred ccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 108 CNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
.+|-|.+.. ....++++||.+++...+.... .....++.+++... ++.... .. ......+.+|+..++
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~i~~~~dg~---l~v~~~-~~-~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH------KANPAAIKIHKDGR---LFVCYL-GD-FKSTGGIFAATENGD 122 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECS------SSSEEEEEECTTSC---EEEEEC-TT-SSSCCEEEEECTTSC
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC------CCCcceEEECCCCc---EEEEeC-CC-CCCCceEEEEeCCCC
Confidence 456555443 4567999999999887653211 12345566776542 222211 10 001246777887776
Q ss_pred ceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCCe
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSGC 263 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G~ 263 (378)
.-+..-..... . ..-..+.+ +|.+|..............|..+|..+.+...+.- ... . ...+.. .+|+
T Consensus 123 ~~~~~~~~~~~-~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~-~~~i~~~~dg~ 194 (333)
T 2dg1_A 123 NLQDIIEDLST-A-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS---V-ANGIALSTDEK 194 (333)
T ss_dssp SCEEEECSSSS-C-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES---S-EEEEEECTTSS
T ss_pred EEEEEEccCcc-C-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC---c-ccceEECCCCC
Confidence 65432201110 0 00112333 57766543321111113458999988766654421 000 0 122332 2454
Q ss_pred -EEEEEecCCCCcEEEEEEcC---ceeee-EEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 264 -LYFSCFCDYPEPVDIWIMKE---SWTKV-FSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 264 -L~l~~~~~~~~~i~iW~l~~---~W~~~-~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
|++...... .+.+|.++. ..... ..+... +.......-+++.++|. +++.. .....|..||
T Consensus 195 ~l~v~~~~~~--~i~~~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~-l~v~~----------~~~~~v~~~d 260 (333)
T 2dg1_A 195 VLWVTETTAN--RLHRIALEDDGVTIQPFGATIPYY-FTGHEGPDSCCIDSDDN-LYVAM----------YGQGRVLVFN 260 (333)
T ss_dssp EEEEEEGGGT--EEEEEEECTTSSSEEEEEEEEEEE-CCSSSEEEEEEEBTTCC-EEEEE----------ETTTEEEEEC
T ss_pred EEEEEeCCCC--eEEEEEecCCCcCcccccceEEEe-cCCCCCCCceEECCCCC-EEEEE----------cCCCEEEEEC
Confidence 666554434 788888753 22111 111110 01111233366666776 44442 2457899999
Q ss_pred CCCCeEEEEEEE
Q 043816 339 LQNQRAAGQVTV 350 (378)
Q Consensus 339 ~~t~~~~~~v~~ 350 (378)
++++..+ .+..
T Consensus 261 ~~g~~~~-~~~~ 271 (333)
T 2dg1_A 261 KRGYPIG-QILI 271 (333)
T ss_dssp TTSCEEE-EEEC
T ss_pred CCCCEEE-EEEc
Confidence 9877777 6654
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=88.15 E-value=12 Score=32.28 Aligned_cols=177 Identities=10% Similarity=0.049 Sum_probs=91.2
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+++....+..+.++|..+++....-... ......+.+++.. .+ ++... ....+.+|+.+++.-..
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~-l~~~~-------~dg~i~~~d~~~~~~~~ 219 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGH------TDGASCIDISNDG-TK-LWTGG-------LDNTVRSWDLREGRQLQ 219 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTS-SE-EEEEE-------TTSEEEEEETTTTEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeecc------cCceEEEEECCCC-CE-EEEEe-------cCCcEEEEECCCCceEe
Confidence 3444444567888888877655422211 2344556666643 22 22221 24568888887764222
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCeEEEE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGCLYFS 267 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~ 267 (378)
.- ..+. .-.++.+ +|.....+... ..|..+|+.+.....+..... . -..+... +|++.++
T Consensus 220 ~~-~~~~----~v~~~~~s~~~~~l~~~~~~------~~i~~~~~~~~~~~~~~~~~~-----~-v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 220 QH-DFTS----QIFSLGYCPTGEWLAVGMES------SNVEVLHVNKPDKYQLHLHES-----C-VLSLKFAYCGKWFVS 282 (337)
T ss_dssp EE-ECSS----CEEEEEECTTSSEEEEEETT------SCEEEEETTSSCEEEECCCSS-----C-EEEEEECTTSSEEEE
T ss_pred ee-cCCC----ceEEEEECCCCCEEEEEcCC------CcEEEEECCCCCeEEEcCCcc-----c-eeEEEECCCCCEEEE
Confidence 11 1111 0012222 45544444332 238889998765443322111 1 2233333 5676666
Q ss_pred EecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 268 CFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 268 ~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
...+. .+.+|.++. .-. ..... .....-+.+.++|..++.. ..++.+..||+
T Consensus 283 ~~~dg--~i~~~~~~~~~~~--~~~~~-----~~~v~~~~~s~~~~~l~~~-----------~~dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDN--LLNAWRTPYGASI--FQSKE-----SSSVLSCDISVDDKYIVTG-----------SGDKKATVYEV 335 (337)
T ss_dssp EETTS--EEEEEETTTCCEE--EEEEC-----SSCEEEEEECTTSCEEEEE-----------ETTSCEEEEEE
T ss_pred ecCCC--cEEEEECCCCeEE--EEecC-----CCcEEEEEECCCCCEEEEe-----------cCCCeEEEEEE
Confidence 66555 899999876 211 22222 1122335666788877777 36778888874
No 65
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=88.11 E-value=12 Score=32.39 Aligned_cols=188 Identities=11% Similarity=0.030 Sum_probs=94.1
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc-eEEe-eccCCc
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS-SRRI-RVDFPY 197 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~-W~~~-~~~~p~ 197 (378)
.+.|+|+.+++....-+.. .....+.++|.++. ++.... . ....+.+|+...+. -... ....+.
T Consensus 109 ~i~v~d~~~~~~~~~~~~~-------~~~~~~~~spdg~~--l~~~~~-~----~~~~i~~~~~~~~g~~~~~~~~~~~~ 174 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIP-------YDAVGIAISPNGNG--LILIDR-S----SANTVRRFKIDADGVLFDTGQEFISG 174 (331)
T ss_dssp EEEEEETTTTEEEEEEECC-------TTEEEEEECTTSSC--EEEEEE-T----TTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred cEEEEECCCCCeEEEEECC-------CCccceEECCCCCE--EEEEec-C----CCceEEEEEECCCCcEeecCCccccC
Confidence 8999999998876532221 12256777776543 222221 1 12226677765431 1111 000010
Q ss_pred cccCCCCce--EECCeeEEEEEeCCCCCCCCEEEEEECCCceE----eeecCCCCCCCCCCCeeEEE-EeCCe-EEEEEe
Q 043816 198 YFSHPRDGT--FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEF----FEVPLPHLENRDSGNLMYMG-NFSGC-LYFSCF 269 (378)
Q Consensus 198 ~~~~~~~~v--~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~----~~i~~P~~~~~~~~~~~~l~-~~~G~-L~l~~~ 269 (378)
. ..-.++ .-+|...+...... ..|..+|+.+.+. ..++.. .. -..+. ..+|+ |++...
T Consensus 175 ~--~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~~~--~~-----~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 175 G--TRPFNITFTPDGNFAFVANLIG-----NSIGILETQNPENITLLNAVGTN--NL-----PGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp S--SSEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEECS--SC-----CCCEEECTTSSEEEEECS
T ss_pred C--CCccceEECCCCCEEEEEeCCC-----CeEEEEECCCCcccceeeeccCC--CC-----CceEEECCCCCEEEEEEc
Confidence 0 000122 23576333333322 3599999976553 333322 11 11232 23566 444333
Q ss_pred cCCCCcEEEEEEcC-ceeeeEEEecC--cccc-ceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 270 CDYPEPVDIWIMKE-SWTKVFSFAGG--VFGI-FTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 270 ~~~~~~i~iW~l~~-~W~~~~~i~~~--~~~~-~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
... .+.+|.++. ....+..+... ..+. ......+++.++|..+++.. ..++.+.+||++++...
T Consensus 241 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~----------~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 241 STV--DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA----------NISRELKVFTISGKVVG 308 (331)
T ss_dssp SEE--EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE----------TTTTEEEEEETTSCEEE
T ss_pred CCC--EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec----------CCCCcEEEEEecCCccc
Confidence 223 688888776 44334444431 1111 11113367788999888774 35678999999998887
Q ss_pred EEE
Q 043816 346 GQV 348 (378)
Q Consensus 346 ~~v 348 (378)
.+
T Consensus 309 -~~ 310 (331)
T 3u4y_A 309 -YV 310 (331)
T ss_dssp -EC
T ss_pred -ce
Confidence 54
No 66
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=88.08 E-value=12 Score=32.30 Aligned_cols=202 Identities=10% Similarity=0.005 Sum_probs=101.1
Q ss_pred cccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
..+|-|.+.+ ....++.+||.|++...+.... ...++.+++..+ .++.. ...+.+|+..+
T Consensus 22 ~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~--------~~~~i~~~~dG~--l~v~~---------~~~l~~~d~~~ 82 (297)
T 3g4e_A 22 EVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA--------PVSSVALRQSGG--YVATI---------GTKFCALNWKE 82 (297)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEECSS--------CEEEEEEBTTSS--EEEEE---------TTEEEEEETTT
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEeCCC--------ceEEEEECCCCC--EEEEE---------CCeEEEEECCC
Confidence 3345444444 4568999999998876553221 234566676554 22221 23678899999
Q ss_pred CceEEeeccCCccccCC-CCceEE--CCeeEEEEEeCCCC-----CCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEE
Q 043816 186 NSSRRIRVDFPYYFSHP-RDGTFA--RGHVHWLVLNEPEG-----YNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYM 257 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~-~~~v~~--~G~lYwl~~~~~~~-----~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l 257 (378)
+.++.+. ..+...... -+.+.+ +|.+|+-....... .....|..+|.....-.... .... .--+
T Consensus 83 g~~~~~~-~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~---~~~~----pngi 154 (297)
T 3g4e_A 83 QSAVVLA-TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD---QVDI----SNGL 154 (297)
T ss_dssp TEEEEEE-ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE---EESB----EEEE
T ss_pred CcEEEEE-ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee---cccc----ccce
Confidence 9888766 222111100 112333 68866543322110 12346888887643322111 0000 1112
Q ss_pred EEe-CC-eEEEEEecCCCCcEEEEEEc-C--ceeeeEEE-ecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCC
Q 043816 258 GNF-SG-CLYFSCFCDYPEPVDIWIMK-E--SWTKVFSF-AGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK 331 (378)
Q Consensus 258 ~~~-~G-~L~l~~~~~~~~~i~iW~l~-~--~W~~~~~i-~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 331 (378)
+.. +| .|+++..... .|.+|.++ . .......+ .... ......-+++..+|. |++.. ...
T Consensus 155 ~~spdg~~lyv~~~~~~--~i~~~~~d~~~G~~~~~~~~~~~~~--~~~~p~g~~~d~~G~-lwva~----------~~~ 219 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSY--SVDAFDYDLQTGQISNRRSVYKLEK--EEQIPDGMCIDAEGK-LWVAC----------YNG 219 (297)
T ss_dssp EECTTSCEEEEEEGGGT--EEEEEEECTTTCCEEEEEEEEECCG--GGCEEEEEEEBTTSC-EEEEE----------ETT
T ss_pred EEcCCCCEEEEecCCCC--cEEEEeccCCCCcccCcEEEEECCC--CCCCCCeeEECCCCC-EEEEE----------cCC
Confidence 222 45 4666655444 77777774 2 32211111 1110 011223356666775 55552 356
Q ss_pred cEEEEEECCCCeEEEEEEE
Q 043816 332 WELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 332 ~~l~~yd~~t~~~~~~v~~ 350 (378)
..|..||+++++..+.+..
T Consensus 220 ~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEcCCCceEEEEEEC
Confidence 7899999997665525544
No 67
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=87.50 E-value=14 Score=32.31 Aligned_cols=199 Identities=11% Similarity=0.064 Sum_probs=97.0
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|+....+..+.|||..+++....-... ......+.+.+.+ .+-+. .. ....+.+|+..++.-..
T Consensus 46 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~l~s-~~-------~dg~i~iwd~~~~~~~~ 110 (369)
T 3zwl_B 46 LLFSCSKDSSASVWYSLNGERLGTLDGH------TGTIWSIDVDCFT-KYCVT-GS-------ADYSIKLWDVSNGQCVA 110 (369)
T ss_dssp EEEEEESSSCEEEEETTTCCEEEEECCC------SSCEEEEEECTTS-SEEEE-EE-------TTTEEEEEETTTCCEEE
T ss_pred EEEEEeCCCEEEEEeCCCchhhhhhhhc------CCcEEEEEEcCCC-CEEEE-Ee-------CCCeEEEEECCCCcEEE
Confidence 3444445667899998888765432211 2345566676643 33222 22 24578889888765333
Q ss_pred eeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCce----Eeeec-CCCCC---CCCCCCeeEEEE-eC
Q 043816 191 IRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE----FFEVP-LPHLE---NRDSGNLMYMGN-FS 261 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~----~~~i~-~P~~~---~~~~~~~~~l~~-~~ 261 (378)
.- ..+.... .-...-+|.....+... .......|..+|+.+.. +.... .+... ......-..+.. .+
T Consensus 111 ~~-~~~~~v~--~~~~~~~~~~l~~~~~~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 111 TW-KSPVPVK--RVEFSPCGNYFLAILDN-VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp EE-ECSSCEE--EEEECTTSSEEEEEECC-BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred Ee-ecCCCeE--EEEEccCCCEEEEecCC-ccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 22 1111000 00111133333333221 00111346666664331 11110 00000 000000222322 25
Q ss_pred CeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
|++.++...+. .+.+|.++........+... .....-+.+.++|..++.. ..++.+.+||+++
T Consensus 187 ~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~-----------~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 187 GKYIIAGHKDG--KISKYDVSNNYEYVDSIDLH----EKSISDMQFSPDLTYFITS-----------SRDTNSFLVDVST 249 (369)
T ss_dssp GCEEEEEETTS--EEEEEETTTTTEEEEEEECC----SSCEEEEEECTTSSEEEEE-----------ETTSEEEEEETTT
T ss_pred CCEEEEEcCCC--EEEEEECCCCcEeEEEEecC----CCceeEEEECCCCCEEEEe-----------cCCceEEEEECCC
Confidence 66666655555 89999987633444444431 1123345667788888777 4778999999999
Q ss_pred CeEE
Q 043816 342 QRAA 345 (378)
Q Consensus 342 ~~~~ 345 (378)
++..
T Consensus 250 ~~~~ 253 (369)
T 3zwl_B 250 LQVL 253 (369)
T ss_dssp CCEE
T ss_pred Ccee
Confidence 8776
No 68
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=87.40 E-value=14 Score=32.13 Aligned_cols=193 Identities=10% Similarity=-0.035 Sum_probs=102.8
Q ss_pred eEEeecCCceEEEEcC-CCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc--
Q 043816 111 LIALKNGENDIALWNP-STKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS-- 187 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP-~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~-- 187 (378)
+|+....+..+.+||. .+++...+.... +......+.+.+ +.+-+.+ . ....+.+|+.++..
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~v~~l~~~~--~~~l~s~-~-------~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNE-----ANLGICRICKYG--DDKLIAA-S-------WDGLIEVIDPRNYGDG 135 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCC-----CCSCEEEEEEET--TTEEEEE-E-------TTSEEEEECHHHHTTB
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccC-----CCCceEEEEeCC--CCEEEEE-c-------CCCeEEEEcccccccc
Confidence 4555555678999999 998877665421 023455667777 4433322 2 23467777765300
Q ss_pred -----eEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCC-ce--EeeecCCCCCCCCCCCeeEEEE
Q 043816 188 -----SRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKS-EE--FFEVPLPHLENRDSGNLMYMGN 259 (378)
Q Consensus 188 -----W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~-~~--~~~i~~P~~~~~~~~~~~~l~~ 259 (378)
.+.+. .+. ....-.++.+++.- .+....+ ..|..+|+.+ .. ......+.... -..+..
T Consensus 136 ~~~~~~~~~~-~~~--~~~~v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~-----i~~i~~ 201 (342)
T 1yfq_A 136 VIAVKNLNSN-NTK--VKNKIFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEESGLKYQ-----IRDVAL 201 (342)
T ss_dssp CEEEEESCSS-SSS--SCCCEEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEECSCSSC-----EEEEEE
T ss_pred cccccCCeee-EEe--eCCceEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeecCCCCc-----eeEEEE
Confidence 11111 111 11111134444433 2222222 3588999887 32 33333322221 233433
Q ss_pred e--CCeEEEEEecCCCCcEEEEEEcCc-----eeeeEEEecCcc-----ccceeeEEEEEeecCCEEEEeeccCCCcccc
Q 043816 260 F--SGCLYFSCFCDYPEPVDIWIMKES-----WTKVFSFAGGVF-----GIFTYAKALAYSKSGDKVLVDKFLYDEDEDE 327 (378)
Q Consensus 260 ~--~G~L~l~~~~~~~~~i~iW~l~~~-----W~~~~~i~~~~~-----~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~ 327 (378)
. +|++.+++..+. .+.+|.++.. ......+..... ........+++.++|..|+..
T Consensus 202 ~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------- 269 (342)
T 1yfq_A 202 LPKEQEGYACSSIDG--RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA---------- 269 (342)
T ss_dssp CSGGGCEEEEEETTS--EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE----------
T ss_pred CCCCCCEEEEEecCC--cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe----------
Confidence 3 567766666655 8999998652 344455543100 001123446667788877777
Q ss_pred ccCCcEEEEEECCCCeEE
Q 043816 328 GINKWELDWYDLQNQRAA 345 (378)
Q Consensus 328 ~~~~~~l~~yd~~t~~~~ 345 (378)
..++.+.+||+++++..
T Consensus 270 -~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 270 -GSDGIISCWNLQTRKKI 286 (342)
T ss_dssp -ETTSCEEEEETTTTEEE
T ss_pred -cCCceEEEEcCccHhHh
Confidence 46789999999988766
No 69
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=87.36 E-value=14 Score=32.15 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=36.8
Q ss_pred cEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 275 PVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 275 ~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
.+.+|.++. ...+..+.... ...-+++.++|+.|++. ..+..+.+||+++++..+++...
T Consensus 276 ~v~~~d~~~-~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~-----------~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 276 RLAKYDLKQ-RKLIKAANLDH-----TYYCVAFDKKGDKLYLG-----------GTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEETTT-TEEEEEEECSS-----CCCEEEECSSSSCEEEE-----------SBSSEEEEEETTTTEEEEEEECS
T ss_pred eEEEEECcc-CeEEEEEcCCC-----CccceEECCCCCEEEEe-----------cCCCeEEEEeccccceeeeeecC
Confidence 677776654 12223333311 11236677788878776 35689999999998766355544
No 70
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=86.95 E-value=18 Score=32.94 Aligned_cols=211 Identities=9% Similarity=-0.050 Sum_probs=103.0
Q ss_pred cccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
..+|.|...+ ....++.+++-++....+.... .....++.+|+.++. +..... ....+++++...
T Consensus 125 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~------~~~p~glavd~~~g~--lY~~d~------~~~~I~~~~~dg 190 (386)
T 3v65_B 125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTG------LESPGGLAVDWVHDK--LYWTDS------GTSRIEVANLDG 190 (386)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCEEEEECSS------CSCCCCEEEETTTTE--EEEEET------TTTEEEECBTTS
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC------CCCccEEEEEeCCCe--EEEEcC------CCCeEEEEeCCC
Confidence 4566666665 3457888888776654442222 112245667765553 222211 133566666654
Q ss_pred CceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE--e
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN--F 260 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~--~ 260 (378)
..-+.+. . .....+ .++.+ +|.|||..... ...|..+|+....-..+-. .... . ---|+. .
T Consensus 191 ~~~~~l~-~--~~l~~P-~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~-~~~~---~-PnGlavd~~ 256 (386)
T 3v65_B 191 AHRKVLL-W--QSLEKP-RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIAD-THLF---W-PNGLTIDYA 256 (386)
T ss_dssp CSCEEEE-C--SSCSCE-EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEEC-SSCS---C-EEEEEEEGG
T ss_pred CceEEee-c--CCCCCC-cEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEE-CCCC---C-eeeEEEeCC
Confidence 4322222 1 011111 13433 58999986432 2469999997654333311 1111 0 122444 4
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
+|+||++..... .|....++.. ....+-.. ....|.++.-.++.|++.. .....|..+|..
T Consensus 257 ~~~lY~aD~~~~--~I~~~d~dG~--~~~~~~~~-----~~~~P~giav~~~~ly~td----------~~~~~V~~~~~~ 317 (386)
T 3v65_B 257 GRRMYWVDAKHH--VIERANLDGS--HRKAVISQ-----GLPHPFAITVFEDSLYWTD----------WHTKSINSANKF 317 (386)
T ss_dssp GTEEEEEETTTT--EEEEECTTSC--SCEEEECS-----SCSSEEEEEEETTEEEEEE----------TTTTEEEEEETT
T ss_pred CCEEEEEECCCC--EEEEEeCCCC--eeEEEEEC-----CCCCceEEEEECCEEEEee----------CCCCeEEEEECC
Confidence 788988876544 5544444331 11111110 0123444443556777774 456789999954
Q ss_pred CC-eEEEEEEEeccCCCceeEEEEEecc
Q 043816 341 NQ-RAAGQVTVHGVPQGCRYTMIYVDSL 367 (378)
Q Consensus 341 t~-~~~~~v~~~~~~~~~~~~~~y~~sl 367 (378)
++ ..+ .|.. +...- ..+..|.+..
T Consensus 318 ~G~~~~-~i~~-~~~~p-~gi~v~~~~~ 342 (386)
T 3v65_B 318 TGKNQE-IIRN-KLHFP-MDIHTLHPQR 342 (386)
T ss_dssp TCCSCE-EEEC-SCSCC-CCEEEESGGG
T ss_pred CCcceE-EEcc-CCCCC-ceEEEEchhc
Confidence 44 444 4432 22211 3455555443
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=86.26 E-value=17 Score=31.97 Aligned_cols=199 Identities=10% Similarity=0.060 Sum_probs=99.9
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCC-CCEEEEEEEEecCCCCcccEEEEEEcCCCc-e
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVS-DDYKVVRLIQFGRGKVEYTEIAVYSLKSNS-S 188 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~-~~ykVv~~~~~~~~~~~~~~~~vyss~t~~-W 188 (378)
+|+....+..+.|||..++++..+-..... ......+.+.+.. +.+-+++ . ....+.+|+..++. .
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~-~-------~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVA-S-------SDGKVSVVEFKENGTT 138 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEE-E-------TTSEEEEEECCTTSCC
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCC----CcceEEEEeCCCCCCCEEEEe-c-------CCCcEEEEecCCCCce
Confidence 444444567899999999875443322211 2345566676653 3333332 2 24577888887753 2
Q ss_pred EEeeccCCccccCCCCceEE---------------CCeeEEEEEeCCCCCCCCEEEEEECCCc--eEeee-cCCCCCCCC
Q 043816 189 RRIRVDFPYYFSHPRDGTFA---------------RGHVHWLVLNEPEGYNGDLIVAFDLKSE--EFFEV-PLPHLENRD 250 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~---------------~G~lYwl~~~~~~~~~~~~il~fD~~~~--~~~~i-~~P~~~~~~ 250 (378)
........ ...-.++.+ +|.+...+..+ ..|..+|+.+. .+..+ .+.....
T Consensus 139 ~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h~~-- 207 (379)
T 3jrp_A 139 SPIIIDAH---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHSD-- 207 (379)
T ss_dssp CEEEEECC---TTCEEEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCSS--
T ss_pred eeEEecCC---CCceEEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEecccC--
Confidence 21110000 000001111 34444443332 13778887543 34332 2221111
Q ss_pred CCCeeEEEEe-C---CeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcc
Q 043816 251 SGNLMYMGNF-S---GCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDE 325 (378)
Q Consensus 251 ~~~~~~l~~~-~---G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~ 325 (378)
. -..+... + |++.+++..+. .+.||.++. .......+... ........-+++.++|..|+..
T Consensus 208 -~-v~~~~~sp~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~-------- 274 (379)
T 3jrp_A 208 -W-VRDVAWSPTVLLRSYLASVSQDR--TCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALS-------- 274 (379)
T ss_dssp -C-EEEEEECCCCSSSEEEEEEETTS--CEEEEEESSTTSCCEEEESSS-SCCSSCEEEEEECSSSCCEEEE--------
T ss_pred -c-EeEEEECCCCCCCCeEEEEeCCC--EEEEEeCCCCCccceeeeecc-ccCCCcEEEEEEcCCCCEEEEe--------
Confidence 1 2223322 3 66666666665 899999987 22212112110 0011223346677888877777
Q ss_pred ccccCCcEEEEEECC-CCeEEEEEE
Q 043816 326 DEGINKWELDWYDLQ-NQRAAGQVT 349 (378)
Q Consensus 326 ~~~~~~~~l~~yd~~-t~~~~~~v~ 349 (378)
..++.+.+||++ .++|+ .+.
T Consensus 275 ---~~dg~i~iw~~~~~~~~~-~~~ 295 (379)
T 3jrp_A 275 ---GGDNKVTLWKENLEGKWE-PAG 295 (379)
T ss_dssp ---ESSSSEEEEEEEETTEEE-EEE
T ss_pred ---cCCCcEEEEeCCCCCccc-ccc
Confidence 367889999988 55666 554
No 72
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=86.20 E-value=14 Score=30.96 Aligned_cols=193 Identities=13% Similarity=0.036 Sum_probs=91.6
Q ss_pred EeecccceEEe-ec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEE
Q 043816 104 IIDTCNGLIAL-KN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVY 181 (378)
Q Consensus 104 ~~~s~~Gll~~-~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vy 181 (378)
+.-+.+|-+.+ .. ....+.++|+-++....++.... ....++.+++.+. +.... . ...+.+|
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~p~~i~~~~~g~---l~v~~-~------~~~i~~~ 92 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL------YQPQGLAVDGAGT---VYVTD-F------NNRVVTL 92 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC------CSCCCEEECTTCC---EEEEE-T------TTEEEEE
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc------CCcceeEECCCCC---EEEEc-C------CCEEEEE
Confidence 33334565555 43 45678899998877666553321 2233456666433 22221 0 2356777
Q ss_pred EcCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE
Q 043816 182 SLKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN 259 (378)
Q Consensus 182 ss~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~ 259 (378)
+..+..-+... ... .. .-.++.+ +|.+|+..... ..|..+|..+........ ..... -..++.
T Consensus 93 d~~~~~~~~~~-~~~--~~-~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~-~~~~~----p~~i~~ 157 (270)
T 1rwi_B 93 AAGSNNQTVLP-FDG--LN-YPEGLAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPF-TGLND----PDGVAV 157 (270)
T ss_dssp CTTCSCCEECC-CCS--CS-SEEEEEECTTCCEEEEEGGG------TEEEEECTTCCSCEECCC-CSCCS----CCCEEE
T ss_pred eCCCceEeeee-cCC--cC-CCcceEECCCCCEEEEECCC------CEEEEEECCCceeEeecc-ccCCC----ceeEEE
Confidence 77665433332 100 00 0113333 57877654332 248888876654332211 11110 122333
Q ss_pred e-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 260 F-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 260 ~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
. +|+|++...... .+.+|..+.. . ...... .......-+++.++| .+++.. .....+..||
T Consensus 158 ~~~g~l~v~~~~~~--~i~~~~~~~~-~-~~~~~~---~~~~~p~~i~~d~~g-~l~v~~----------~~~~~v~~~~ 219 (270)
T 1rwi_B 158 DNSGNVYVTDTDNN--RVVKLEAESN-N-QVVLPF---TDITAPWGIAVDEAG-TVYVTE----------HNTNQVVKLL 219 (270)
T ss_dssp CTTCCEEEEEGGGT--EEEEECTTTC-C-EEECCC---SSCCSEEEEEECTTC-CEEEEE----------TTTSCEEEEC
T ss_pred eCCCCEEEEECCCC--EEEEEecCCC-c-eEeecc---cCCCCceEEEECCCC-CEEEEE----------CCCCcEEEEc
Confidence 3 578777765444 6666655441 0 111111 111223345666666 455552 3467899999
Q ss_pred CCCCeEE
Q 043816 339 LQNQRAA 345 (378)
Q Consensus 339 ~~t~~~~ 345 (378)
++++...
T Consensus 220 ~~~~~~~ 226 (270)
T 1rwi_B 220 AGSTTST 226 (270)
T ss_dssp TTCSCCE
T ss_pred CCCCcce
Confidence 9887665
No 73
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=86.16 E-value=19 Score=32.45 Aligned_cols=204 Identities=8% Similarity=0.028 Sum_probs=103.6
Q ss_pred cc-eEEeecCCceEEEEcCCCcceeecC-CCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 109 NG-LIALKNGENDIALWNPSTKKHVLLP-KFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 109 ~G-ll~~~~~~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
+| +|+....+..+.|||..+++...-. .+......+......+.+.+.+..+-+.+ . ....+.+|+.+++
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-~-------~dg~i~iwd~~~~ 164 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-G-------CDNVILVWDVGTG 164 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE-E-------TTSCEEEEETTTT
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE-c-------CCCEEEEEECCCC
Confidence 44 4444445678999998887532110 00000001134455666776653333222 2 2346889998887
Q ss_pred ceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-e-cCCCCCCCCCCCeeEEEE-eC
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-V-PLPHLENRDSGNLMYMGN-FS 261 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i-~~P~~~~~~~~~~~~l~~-~~ 261 (378)
.....- ... .....-.++.+ +|.....+..+ ..|..+|+.+.+... + ....... ...+.. .+
T Consensus 165 ~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 231 (402)
T 2aq5_A 165 AAVLTL-GPD-VHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEGTR-----PVHAVFVSE 231 (402)
T ss_dssp EEEEEE-CTT-TCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCSSS-----CCEEEECST
T ss_pred CccEEE-ecC-CCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCCCc-----ceEEEEcCC
Confidence 543221 000 00001113333 45544444332 359999998765433 3 2222211 222322 35
Q ss_pred CeEEEEEec-CCCCcEEEEEEcC-ce-eeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 262 GCLYFSCFC-DYPEPVDIWIMKE-SW-TKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 262 G~L~l~~~~-~~~~~i~iW~l~~-~W-~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
|++.+++.. .....+.+|.+.. .- .....+.. ......+.+.++|..+++.. ..++.+.+||
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~g----------~~dg~i~i~d 296 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT-----SSGVLLPFFDPDTNIVYLCG----------KGDSSIRYFE 296 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC-----CSSCEEEEEETTTTEEEEEE----------TTCSCEEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEeccC-----CCceeEEEEcCCCCEEEEEE----------cCCCeEEEEE
Confidence 676666521 1223899999876 21 12222222 11233456677888887662 3578999999
Q ss_pred CCCCe--EEEEEE
Q 043816 339 LQNQR--AAGQVT 349 (378)
Q Consensus 339 ~~t~~--~~~~v~ 349 (378)
+++++ +. .+.
T Consensus 297 ~~~~~~~~~-~l~ 308 (402)
T 2aq5_A 297 ITSEAPFLH-YLS 308 (402)
T ss_dssp ECSSTTCEE-EEE
T ss_pred ecCCCcceE-eec
Confidence 99988 66 554
No 74
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=86.09 E-value=18 Score=32.02 Aligned_cols=188 Identities=13% Similarity=0.159 Sum_probs=93.4
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|.....+..+.|||..++++......... +...+..+.+.|.+ .+- +... ....+.+++..++.++.
T Consensus 30 ~las~~~D~~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~g-~~l-~s~s-------~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEG---HQRTVRKVAWSPCG-NYL-ASAS-------FDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECSS---CSSCEEEEEECTTS-SEE-EEEE-------TTSCEEEEEECCC-EEE
T ss_pred EEEEEcCCCeEEEEEcCCCcceeeeeeccc---cCCcEEEEEECCCC-CEE-EEEE-------CCCcEEEEEccCCCeEE
Confidence 333334566788999888765422111111 13455667777654 332 2221 23456778777776654
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCc-eEeeec-CCCCCCCCCCCeeEEEE-eCCeEE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSE-EFFEVP-LPHLENRDSGNLMYMGN-FSGCLY 265 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~-~~~~i~-~P~~~~~~~~~~~~l~~-~~G~L~ 265 (378)
+. .+... ...-.++.+ +|.+-..+..+ ..|..+|+.++ ....+. +... ...-..+.. .+|.+.
T Consensus 98 ~~-~~~~h-~~~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 98 VT-TLEGH-ENEVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSVLNSH----TQDVKHVVWHPSQELL 165 (345)
T ss_dssp EE-EECCC-SSCEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEEECCC----CSCEEEEEECSSSSCE
T ss_pred EE-EccCC-CCCceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEEecCc----CCCeEEEEECCCCCEE
Confidence 44 11110 000012222 35433333322 23778887654 222221 1111 110222322 256666
Q ss_pred EEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 266 FSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 266 l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
+.+..+. .+.+|.++. .|.....+... .....-+++.++|..|+.. ..++.+.+||.
T Consensus 166 ~s~s~d~--~i~~w~~~~~~~~~~~~~~~h----~~~v~~l~~sp~g~~l~s~-----------s~D~~v~iW~~ 223 (345)
T 3fm0_A 166 ASASYDD--TVKLYREEEDDWVCCATLEGH----ESTVWSLAFDPSGQRLASC-----------SDDRTVRIWRQ 223 (345)
T ss_dssp EEEETTS--CEEEEEEETTEEEEEEEECCC----SSCEEEEEECTTSSEEEEE-----------ETTSCEEEEEE
T ss_pred EEEeCCC--cEEEEEecCCCEEEEEEecCC----CCceEEEEECCCCCEEEEE-----------eCCCeEEEecc
Confidence 6666555 899999987 78776666531 1123345666777776666 35667777764
No 75
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=85.99 E-value=18 Score=32.17 Aligned_cols=189 Identities=11% Similarity=0.000 Sum_probs=91.4
Q ss_pred cccceEEee-cCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIALK-NGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
+.+|-.++. ..+..+.|||..+++....-... ......+.+.+..+.+.+.+ . ....+.+|+.++
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------~~~v~~v~~s~~~~~~~~s~-~-------~dg~v~~wd~~~ 213 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH------SSEVNCVAACPGKDTIFLSC-G-------EDGRILLWDTRK 213 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTCSSCEEEE-E-------TTSCEEECCTTS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------CCCEEEEEEccCCCceeeee-c-------cCCceEEEECCC
Confidence 335544443 35668999999998866432221 22344455555544332222 1 134577777776
Q ss_pred CceEEeeccCCccccCCCCceEE--C-CeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe-
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFA--R-GHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF- 260 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~--~-G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~- 260 (378)
+.-.... .... ....-.++.+ + +.+...+..+ ..|..+|+.+.+- ..+...... -..+...
T Consensus 214 ~~~~~~~-~~~~-~~~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~~~~~------v~~l~~sp 279 (357)
T 4g56_B 214 PKPATRI-DFCA-SDTIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAVHSQN------ITGLAYSY 279 (357)
T ss_dssp SSCBCBC-CCTT-CCSCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECCCSSC------EEEEEECS
T ss_pred Cceeeee-eecc-ccccccchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEecccee------EEEEEEcC
Confidence 5422111 0000 0000113333 2 3333333222 2388899876543 223322111 2233332
Q ss_pred CC-eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEee-cCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 261 SG-CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSK-SGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 261 ~G-~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~-~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
+| ++.+.+..+. .+.||.++.. .....+.. .....-+++++ ++..|+-. ..++.+.+||
T Consensus 280 ~~~~~lasgs~D~--~i~iwd~~~~-~~~~~~~H-----~~~V~~vafsP~d~~~l~s~-----------s~Dg~v~iW~ 340 (357)
T 4g56_B 280 HSSPFLASISEDC--TVAVLDADFS-EVFRDLSH-----RDFVTGVAWSPLDHSKFTTV-----------GWDHKVLHHH 340 (357)
T ss_dssp SSSCCEEEEETTS--CEEEECTTSC-EEEEECCC-----SSCEEEEEECSSSTTEEEEE-----------ETTSCEEEEE
T ss_pred CCCCEEEEEeCCC--EEEEEECCCC-cEeEECCC-----CCCEEEEEEeCCCCCEEEEE-----------cCCCeEEEEE
Confidence 45 4444455455 8999987651 11222222 11233356665 67776666 4788999999
Q ss_pred CCCC
Q 043816 339 LQNQ 342 (378)
Q Consensus 339 ~~t~ 342 (378)
+.+.
T Consensus 341 ~~~~ 344 (357)
T 4g56_B 341 LPSE 344 (357)
T ss_dssp CC--
T ss_pred CCCC
Confidence 8654
No 76
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=85.98 E-value=16 Score=31.44 Aligned_cols=188 Identities=13% Similarity=0.035 Sum_probs=92.0
Q ss_pred ceEEeecCCceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC--
Q 043816 110 GLIALKNGENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN-- 186 (378)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~-- 186 (378)
.+|........++++|+.||+.+. ++.... .......+.+.. + ++. . ....+..|+. ++
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~------~~~~~~~~~pdG-~--ilv-s-------~~~~V~~~d~-~G~~ 67 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKG------WECNSVAATKAG-E--ILF-S-------YSKGAKMITR-DGRE 67 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTT------CCCCEEEECTTS-C--EEE-E-------CBSEEEEECT-TSCE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCcc------CCCcCeEECCCC-C--EEE-e-------CCCCEEEECC-CCCE
Confidence 344444456789999999998774 343221 011222334433 2 222 1 1235778887 44
Q ss_pred ceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCC-CCCCeeEEEEeCCeEE
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENR-DSGNLMYMGNFSGCLY 265 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~-~~~~~~~l~~~~G~L~ 265 (378)
.|+... .-.... ....+.-||.++...... ...|+.||...+.-..+.+...... ...........+|.+.
T Consensus 68 ~W~~~~-~~~~~~--~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 68 LWNIAA-PAGCEM--QTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp EEEEEC-CTTCEE--EEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred EEEEcC-CCCccc--cccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence 476544 110110 011334567766554321 2358899987665444443322110 0000111123356665
Q ss_pred EEEecCCCCcEEEEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 266 FSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 266 l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
++..... .+..|..+. .|.... +. . ... .....+|++++.. ....+++.+|++|++
T Consensus 140 v~~~~~~--~v~~~d~~G~~~w~~~~--~~-----~-~~~-~~~~~~g~~~v~~-----------~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 140 VPLFATS--EVREIAPNGQLLNSVKL--SG-----T-PFS-SAFLDNGDCLVAC-----------GDAHCFVQLNLESNR 197 (276)
T ss_dssp EEETTTT--EEEEECTTSCEEEEEEC--SS-----C-CCE-EEECTTSCEEEEC-----------BTTSEEEEECTTTCC
T ss_pred EEecCCC--EEEEECCCCCEEEEEEC--CC-----C-ccc-eeEcCCCCEEEEe-----------CCCCeEEEEeCcCCc
Confidence 5544333 666666554 454322 11 0 011 2334577777666 356689999999665
Q ss_pred EE
Q 043816 344 AA 345 (378)
Q Consensus 344 ~~ 345 (378)
..
T Consensus 198 ~~ 199 (276)
T 3no2_A 198 IV 199 (276)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=85.94 E-value=21 Score=32.69 Aligned_cols=192 Identities=10% Similarity=0.052 Sum_probs=99.7
Q ss_pred eEeecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEE
Q 043816 103 PIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYS 182 (378)
Q Consensus 103 ~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vys 182 (378)
..++..+..++....+..+.|||..|++....-... ......+.++ +.+-+. .. ....+.+++
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~---~~~l~s-g~-------~dg~i~vwd 199 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH------TGSVLCLQYD---ERVIIT-GS-------SDSTVRVWD 199 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCC------SSCEEEEECC---SSEEEE-EE-------TTSCEEEEE
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC------CCcEEEEEEC---CCEEEE-Ec-------CCCeEEEEE
Confidence 334444455555556778999999998876542222 2233444542 232222 22 245688888
Q ss_pred cCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEeC
Q 043816 183 LKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNFS 261 (378)
Q Consensus 183 s~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~~ 261 (378)
..++.-...- .. ....-.++.+++.....+..+ ..|..+|+.+..-.. ......- .. .+.....+
T Consensus 200 ~~~~~~~~~~---~~-h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~---~~-~v~~~~~~ 265 (435)
T 1p22_A 200 VNTGEMLNTL---IH-HCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRVLVGH---RA-AVNVVDFD 265 (435)
T ss_dssp SSSCCEEEEE---CC-CCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEEECCC---SS-CEEEEEEE
T ss_pred CCCCcEEEEE---cC-CCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeeeEecCC---CC-cEEEEEeC
Confidence 8877532211 10 000111445555544333332 238899987654221 1100011 11 33333347
Q ss_pred CeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
|+..+++..+. .+.+|.++. ...+..+... ... +.++.-+++.++.. ..++.+..||+++
T Consensus 266 ~~~l~s~~~dg--~i~vwd~~~-~~~~~~~~~~----~~~--v~~~~~~~~~l~~g-----------~~dg~i~iwd~~~ 325 (435)
T 1p22_A 266 DKYIVSASGDR--TIKVWNTST-CEFVRTLNGH----KRG--IACLQYRDRLVVSG-----------SSDNTIRLWDIEC 325 (435)
T ss_dssp TTEEEEEETTS--EEEEEETTT-CCEEEEEECC----SSC--EEEEEEETTEEEEE-----------ETTSCEEEEETTT
T ss_pred CCEEEEEeCCC--eEEEEECCc-CcEEEEEcCC----CCc--EEEEEeCCCEEEEE-----------eCCCeEEEEECCC
Confidence 77766666665 899998876 1223334321 001 12222356777777 4778899999998
Q ss_pred CeEE
Q 043816 342 QRAA 345 (378)
Q Consensus 342 ~~~~ 345 (378)
++..
T Consensus 326 ~~~~ 329 (435)
T 1p22_A 326 GACL 329 (435)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 7665
No 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.51 E-value=40 Score=35.65 Aligned_cols=191 Identities=15% Similarity=0.159 Sum_probs=98.4
Q ss_pred cc-eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 109 NG-LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 109 ~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
+| +|.....+..+.|||..|++...--... ......+.+.+.+ .+-+.+ . ....+.+++..++.
T Consensus 626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h------~~~v~~~~~s~~~-~~l~s~-~-------~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAH------EDEVLCCAFSSDD-SYIATC-S-------ADKKVKIWDSATGK 690 (1249)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTTS-SEEEEE-E-------TTSEEEEEETTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEeccC------CCCEEEEEEecCC-CEEEEE-e-------CCCeEEEEECCCCc
Confidence 44 4444445678999999998865422211 3345566776654 333322 1 24578899988875
Q ss_pred eEEeeccCCccccCCCCceEEC---CeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEE-eCC
Q 043816 188 SRRIRVDFPYYFSHPRDGTFAR---GHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGN-FSG 262 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v~~~---G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~-~~G 262 (378)
-...-.. . ...-.++.+. ...+..++..+ ..|..+|+.+..... +...... -..+.. .+|
T Consensus 691 ~~~~~~~-~---~~~v~~~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~~~~~~h~~~------v~~~~~sp~~ 755 (1249)
T 3sfz_A 691 LVHTYDE-H---SEQVNCCHFTNKSNHLLLATGSND-----FFLKLWDLNQKECRNTMFGHTNS------VNHCRFSPDD 755 (1249)
T ss_dssp EEEEEEC-C---SSCEEEEEECSSSSCCEEEEEETT-----SCEEEEETTSSSEEEEECCCSSC------EEEEEECSST
T ss_pred eEEEEcC-C---CCcEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCcchhheecCCCCC------EEEEEEecCC
Confidence 3222101 0 0000122221 12222233322 238889988765433 2221111 222322 356
Q ss_pred eEEEEEecCCCCcEEEEEEcC-ceeeeEEEecC-cc-c-------cceeeEEEEEeecCCEEEEeeccCCCccccccCCc
Q 043816 263 CLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGG-VF-G-------IFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~-~~-~-------~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 332 (378)
+..+++..+. .+.+|.+.. .-. ..+... .. . .......+++.++|+.++.. ..+
T Consensus 756 ~~l~s~s~dg--~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------------~~~ 819 (1249)
T 3sfz_A 756 ELLASCSADG--TLRLWDVRSANER--KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA------------AKN 819 (1249)
T ss_dssp TEEEEEESSS--EEEEEEGGGTEEE--EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE------------ETT
T ss_pred CEEEEEECCC--eEEEEeCCCCccc--ceecccccccccCCccccccceEEEEEECCCCCEEEEE------------cCC
Confidence 6666666555 899999876 211 222210 00 0 00112224556788877777 467
Q ss_pred EEEEEECCCCeEE
Q 043816 333 ELDWYDLQNQRAA 345 (378)
Q Consensus 333 ~l~~yd~~t~~~~ 345 (378)
.+..||..++...
T Consensus 820 ~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 820 KVLLFDIHTSGLL 832 (1249)
T ss_dssp EEEEEETTTCCEE
T ss_pred cEEEEEecCCCce
Confidence 8999999988877
No 79
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=84.82 E-value=18 Score=31.07 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=73.2
Q ss_pred ccEEEEEEcCCC--ceEEeeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCC
Q 043816 175 YTEIAVYSLKSN--SSRRIRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDS 251 (378)
Q Consensus 175 ~~~~~vyss~t~--~W~~~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 251 (378)
...+.+++.+++ .|+... .-. ..... .+.-+|.++. ... ..|..||...+.-..+..|....
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~-~~~---~~~~~~~~~pdG~ilv-s~~-------~~V~~~d~~G~~~W~~~~~~~~~--- 78 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPL-EKG---WECNSVAATKAGEILF-SYS-------KGAKMITRDGRELWNIAAPAGCE--- 78 (276)
T ss_dssp CSEEEEEETTTTEEEEEEEC-CTT---CCCCEEEECTTSCEEE-ECB-------SEEEEECTTSCEEEEEECCTTCE---
T ss_pred CCEEEEEECCCCeEEEEeCC-Ccc---CCCcCeEECCCCCEEE-eCC-------CCEEEECCCCCEEEEEcCCCCcc---
Confidence 457778888776 477654 110 00111 2333787776 322 24999999655445555542211
Q ss_pred CCeeEE-EEeCCeEEEEEecCCCCcEEEEEEcC----ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccc
Q 043816 252 GNLMYM-GNFSGCLYFSCFCDYPEPVDIWIMKE----SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDED 326 (378)
Q Consensus 252 ~~~~~l-~~~~G~L~l~~~~~~~~~i~iW~l~~----~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~ 326 (378)
.... ...+|++.++.... .-.++.++. -|.. .+.......+.....+....+|++|+..
T Consensus 79 --~~~~~~~~dG~~lv~~~~~---~~~v~~vd~~Gk~l~~~--~~~~~~~~~~~~~~~v~~~~~G~~lv~~--------- 142 (276)
T 3no2_A 79 --MQTARILPDGNALVAWCGH---PSTILEVNMKGEVLSKT--EFETGIERPHAQFRQINKNKKGNYLVPL--------- 142 (276)
T ss_dssp --EEEEEECTTSCEEEEEEST---TEEEEEECTTSCEEEEE--EECCSCSSGGGSCSCCEECTTSCEEEEE---------
T ss_pred --ccccEECCCCCEEEEecCC---CCEEEEEeCCCCEEEEE--eccCCCCcccccccCceECCCCCEEEEe---------
Confidence 1122 23356766665431 224455533 3332 2222110111111123456688877766
Q ss_pred cccCCcEEEEEECCCCeEEEEEEE
Q 043816 327 EGINKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 327 ~~~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
..+..++.||++.+.+. ++..
T Consensus 143 --~~~~~v~~~d~~G~~~w-~~~~ 163 (276)
T 3no2_A 143 --FATSEVREIAPNGQLLN-SVKL 163 (276)
T ss_dssp --TTTTEEEEECTTSCEEE-EEEC
T ss_pred --cCCCEEEEECCCCCEEE-EEEC
Confidence 46789999999976666 5544
No 80
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=84.62 E-value=21 Score=31.73 Aligned_cols=195 Identities=13% Similarity=0.042 Sum_probs=90.1
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
+|.++....+..+.|||..+++.......... .+...+..+.+.|.+. +- +... ....+.+++..++.-
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~--~h~~~V~~v~~spdg~-~l-~sgs-------~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKY--EHDDIVKTLSVFSDGT-QA-VSGG-------KDFSVKVWDLSQKAV 173 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEEC--CCSSCEEEEEECSSSS-EE-EEEE-------TTSCEEEEETTTTEE
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccC--CCCCCEEEEEECCCCC-EE-EEEe-------CCCeEEEEECCCCcE
Confidence 45555555567899999999876554332211 1133455666666433 32 2222 244678888877643
Q ss_pred EEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe--CCe
Q 043816 189 RRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF--SGC 263 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~--~G~ 263 (378)
...- ... ...-.++.+ +|.-+.+....+ ..|..+|+.+.+... +....... . -..+... ++.
T Consensus 174 ~~~~-~~h---~~~v~~v~~s~~~~~~~~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~~---~-v~~v~~sp~~~~ 240 (357)
T 4g56_B 174 LKSY-NAH---SSEVNCVAACPGKDTIFLSCGED-----GRILLWDTRKPKPATRIDFCASDT---I-PTSVTWHPEKDD 240 (357)
T ss_dssp EEEE-CCC---SSCEEEEEECTTCSSCEEEEETT-----SCEEECCTTSSSCBCBCCCTTCCS---C-EEEEEECTTSTT
T ss_pred EEEE-cCC---CCCEEEEEEccCCCceeeeeccC-----CceEEEECCCCceeeeeeeccccc---c-ccchhhhhcccc
Confidence 2211 000 000012322 233233333322 237888887654322 22211111 1 2223332 355
Q ss_pred EEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCE-EEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 264 LYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDK-VLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~-vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
+.++...+. .+.+|.++. ......+... .....-+++.++|.. |.-. ..++.+.+||++++
T Consensus 241 ~la~g~~d~--~i~~wd~~~-~~~~~~~~~~----~~~v~~l~~sp~~~~~lasg-----------s~D~~i~iwd~~~~ 302 (357)
T 4g56_B 241 TFACGDETG--NVSLVNIKN-PDSAQTSAVH----SQNITGLAYSYHSSPFLASI-----------SEDCTVAVLDADFS 302 (357)
T ss_dssp EEEEEESSS--CEEEEESSC-GGGCEEECCC----SSCEEEEEECSSSSCCEEEE-----------ETTSCEEEECTTSC
T ss_pred eEEEeeccc--ceeEEECCC-CcEeEEEecc----ceeEEEEEEcCCCCCEEEEE-----------eCCCEEEEEECCCC
Confidence 655555555 899998876 1122223220 112233556666654 4444 36788999999998
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
+..
T Consensus 303 ~~~ 305 (357)
T 4g56_B 303 EVF 305 (357)
T ss_dssp EEE
T ss_pred cEe
Confidence 776
No 81
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=84.20 E-value=23 Score=31.72 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=98.3
Q ss_pred ceEEeecCCceEEEEcCCCcc------eeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEc
Q 043816 110 GLIALKNGENDIALWNPSTKK------HVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSL 183 (378)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~------~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 183 (378)
.+|+....+..+.|||..+++ ......... .+......+.+.+..+.+-+.+ . ....+.+|+.
T Consensus 127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~-~-------~dg~v~iwd~ 195 (416)
T 2pm9_A 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM---SSVDEVISLAWNQSLAHVFASA-G-------SSNFASIWDL 195 (416)
T ss_dssp TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC---CSSCCCCEEEECSSCTTEEEEE-S-------SSSCEEEEET
T ss_pred CEEEEEcCCCeEEEEECCCCcccccccccccccccc---CCCCCeeEEEeCCCCCcEEEEE-c-------CCCCEEEEEC
Confidence 344444456789999998886 222211111 1133455667766544433222 1 2456888988
Q ss_pred CCCceEEeeccCCccc---cCCCCceEE--CC-eeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEE
Q 043816 184 KSNSSRRIRVDFPYYF---SHPRDGTFA--RG-HVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYM 257 (378)
Q Consensus 184 ~t~~W~~~~~~~p~~~---~~~~~~v~~--~G-~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l 257 (378)
+++.-...- ..+... ...-.++.+ +| .+...+..+. ....|..+|+.+..-....+.. .. ...-..+
T Consensus 196 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~~~~i~~~d~~~~~~~~~~~~~-~~--~~~v~~~ 268 (416)
T 2pm9_A 196 KAKKEVIHL-SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD---NDPSILIWDLRNANTPLQTLNQ-GH--QKGILSL 268 (416)
T ss_dssp TTTEEEEEE-CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS---SSCCCCEEETTSTTSCSBCCCS-CC--SSCEEEE
T ss_pred CCCCcceEE-eccccccccCCceEEEEECCCCCCEEEEEECCC---CCceEEEEeCCCCCCCcEEeec-Cc--cCceeEE
Confidence 886543322 111100 001113333 23 2333333221 0013788888764211111110 00 1102333
Q ss_pred EEe--CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecC-CEEEEeeccCCCccccccCCcEE
Q 043816 258 GNF--SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSG-DKVLVDKFLYDEDEDEGINKWEL 334 (378)
Q Consensus 258 ~~~--~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~l 334 (378)
... +|++.+.+..+. .+.+|.++. ...+..+... .....-+.+.+++ ..++.. ..++.+
T Consensus 269 ~~s~~~~~~l~s~~~dg--~v~~wd~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~~l~s~-----------~~d~~i 330 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDN--TVLLWNPES-AEQLSQFPAR----GNWCFKTKFAPEAPDLFACA-----------SFDNKI 330 (416)
T ss_dssp EECSSCSSCEEEEESSS--EEEEECSSS-CCEEEEEECS----SSCCCCEEECTTCTTEEEEC-----------CSSSEE
T ss_pred EeCCCCCCeEEEEeCCC--CEEEeeCCC-CccceeecCC----CCceEEEEECCCCCCEEEEE-----------ecCCcE
Confidence 333 567777766666 899998865 1233444431 0111225666777 566666 477899
Q ss_pred EEEECCCCeEE
Q 043816 335 DWYDLQNQRAA 345 (378)
Q Consensus 335 ~~yd~~t~~~~ 345 (378)
.+||+++....
T Consensus 331 ~iw~~~~~~~~ 341 (416)
T 2pm9_A 331 EVQTLQNLTNT 341 (416)
T ss_dssp EEEESCCCCCS
T ss_pred EEEEccCCCCC
Confidence 99999887643
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.03 E-value=36 Score=33.86 Aligned_cols=189 Identities=10% Similarity=0.094 Sum_probs=99.9
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC-c
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN-S 187 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~-~ 187 (378)
+.+|+....+..+.|||..+++....-... ......+.+.+.+. + ++... ....+.+|+..++ .
T Consensus 67 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~v~~~~~s~~~~-~-l~~~~-------~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDYIRSIAVHPTKP-Y-VLSGS-------DDLTVKLWNWENNWA 131 (814)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSS-E-EEEEE-------TTSEEEEEEGGGTSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecC------CCCEEEEEEeCCCC-E-EEEEc-------CCCEEEEEECCCCce
Confidence 345555556778999999998865432211 23455566666543 2 22221 2457888888765 2
Q ss_pred eEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEe---
Q 043816 188 SRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNF--- 260 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~--- 260 (378)
....- .. ....-.++.+ +|.....+..+ ..|..+|+.+.... .+..+.... -..+...
T Consensus 132 ~~~~~---~~-~~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~~-----v~~~~~~~~~ 196 (814)
T 3mkq_A 132 LEQTF---EG-HEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQERG-----VNYVDYYPLP 196 (814)
T ss_dssp EEEEE---EC-CSSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECCCTTC-----CCEEEECCST
T ss_pred EEEEE---cC-CCCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecCCCCC-----EEEEEEEECC
Confidence 22111 00 0001112333 34443333322 24889998654332 222221111 1122222
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
+|.+.+++..+. .+.+|.++. ......+... ......+.++++|..++.. ..++.+.+||+.
T Consensus 197 ~~~~l~~~~~dg--~i~~~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~-----------~~dg~v~vwd~~ 258 (814)
T 3mkq_A 197 DKPYMITASDDL--TIKIWDYQT-KSCVATLEGH----MSNVSFAVFHPTLPIIISG-----------SEDGTLKIWNSS 258 (814)
T ss_dssp TCCEEEEECTTS--EEEEEETTT-TEEEEEEECC----SSCEEEEEECSSSSEEEEE-----------ETTSCEEEEETT
T ss_pred CCCEEEEEeCCC--EEEEEECCC-CcEEEEEcCC----CCCEEEEEEcCCCCEEEEE-----------eCCCeEEEEECC
Confidence 566666665555 899998866 1223333320 1123446677888877777 467889999999
Q ss_pred CCeEE
Q 043816 341 NQRAA 345 (378)
Q Consensus 341 t~~~~ 345 (378)
+++..
T Consensus 259 ~~~~~ 263 (814)
T 3mkq_A 259 TYKVE 263 (814)
T ss_dssp TCSEE
T ss_pred CCcEE
Confidence 87766
No 83
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=83.91 E-value=19 Score=30.54 Aligned_cols=204 Identities=10% Similarity=0.101 Sum_probs=103.9
Q ss_pred cccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
+.+|-+.+.. ....+.++||-.+....++...... .......++.+++..+. ++.... . ....+.+|+...
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-~~~~~p~~i~~~~~~g~--l~v~~~-~----~~~~i~~~d~~g 109 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD-SQLLYPNRVAVVRNSGD--IIVTER-S----PTHQIQIYNQYG 109 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSST-TCBSSEEEEEEETTTTE--EEEEEC-G----GGCEEEEECTTS
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCc-ccccCceEEEEEcCCCe--EEEEcC-C----CCCEEEEECCCC
Confidence 3455555543 3567899998866655665432111 11233455666543332 222221 0 134677787433
Q ss_pred CceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CC
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SG 262 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G 262 (378)
..-+... . +. .. .-.++.+ +|.+|..... ...|..||...+....+..+.... . -..++.. +|
T Consensus 110 ~~~~~~~-~-~~-~~-~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~~---~-p~~i~~~~~g 175 (286)
T 1q7f_A 110 QFVRKFG-A-TI-LQ-HPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLE---F-PNGVVVNDKQ 175 (286)
T ss_dssp CEEEEEC-T-TT-CS-CEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCS---S-EEEEEECSSS
T ss_pred cEEEEec-C-cc-CC-CceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCccC---C-cEEEEECCCC
Confidence 3222222 1 10 00 0113333 5876654322 135999998777666654332221 1 2234333 58
Q ss_pred eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCc-EEEEEECCC
Q 043816 263 CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW-ELDWYDLQN 341 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~-~l~~yd~~t 341 (378)
+|++...... .|.+|..+.. .+..+... +......-+++.++|.+++.. .... .+..||.+.
T Consensus 176 ~l~v~~~~~~--~i~~~~~~g~--~~~~~~~~--g~~~~p~~i~~d~~G~l~v~~-----------~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 176 EIFISDNRAH--CVKVFNYEGQ--YLRQIGGE--GITNYPIGVGINSNGEILIAD-----------NHNNFNLTIFTQDG 238 (286)
T ss_dssp EEEEEEGGGT--EEEEEETTCC--EEEEESCT--TTSCSEEEEEECTTCCEEEEE-----------CSSSCEEEEECTTS
T ss_pred CEEEEECCCC--EEEEEcCCCC--EEEEEccC--CccCCCcEEEECCCCCEEEEe-----------CCCCEEEEEECCCC
Confidence 8877765555 7888876542 22233321 112223346666777644444 2444 899999988
Q ss_pred CeEEEEEEE
Q 043816 342 QRAAGQVTV 350 (378)
Q Consensus 342 ~~~~~~v~~ 350 (378)
+.++ .+..
T Consensus 239 ~~~~-~~~~ 246 (286)
T 1q7f_A 239 QLIS-ALES 246 (286)
T ss_dssp CEEE-EEEE
T ss_pred CEEE-EEcc
Confidence 8877 6654
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=83.49 E-value=24 Score=31.39 Aligned_cols=204 Identities=9% Similarity=0.056 Sum_probs=96.8
Q ss_pred EEeecCCceEEEEcCCC------cceeecCCC-CCCC-----CCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEE
Q 043816 112 IALKNGENDIALWNPST------KKHVLLPKF-WSDF-----DDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIA 179 (378)
Q Consensus 112 l~~~~~~~~~~V~NP~T------~~~~~LP~~-~~~~-----~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~ 179 (378)
|+....+..+.+||..+ ++.....+. .... .........+.+.+.. .++... ....+.
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~-------~dg~i~ 210 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGF-------NNGTVQ 210 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEEC-------TTSEEE
T ss_pred EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEe-------CCCcEE
Confidence 44444567899999887 544331111 0000 0012334455666543 333222 245788
Q ss_pred EEEcCCCceEEeeccCCccc---cCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCC----
Q 043816 180 VYSLKSNSSRRIRVDFPYYF---SHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENR---- 249 (378)
Q Consensus 180 vyss~t~~W~~~~~~~p~~~---~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~---- 249 (378)
+|+.+++.-...- ...... ...-.++.+ +|.+...+..+. ....|..+|+.+.+. ..+..|.....
T Consensus 211 i~d~~~~~~~~~~-~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 1sq9_A 211 ISELSTLRPLYNF-ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---SFGCITLYETEFGERIGSLSVPTHSSQASLG 286 (397)
T ss_dssp EEETTTTEEEEEE-ECCC---CCCCCEEEEEECSSTTEEEEEEEET---TEEEEEEEETTTCCEEEEECBC--------C
T ss_pred EEECCCCceeEEE-eccccccccCCccceEEECCCCCEEEEEecCC---CCceEEEEECCCCcccceeccCccccccccc
Confidence 9998876432211 110000 001113333 455444443320 002499999876543 33444321000
Q ss_pred ---CCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEec--Ccccc---------------ceeeEEEEEe
Q 043816 250 ---DSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAG--GVFGI---------------FTYAKALAYS 308 (378)
Q Consensus 250 ---~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~--~~~~~---------------~~~~~~~~~~ 308 (378)
+...-..+... +|++.+++..+. .+.||.++. ...+..+.. ...+. .....-+++.
T Consensus 287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 287 EFAHSSWVMSLSFNDSGETLCSAGWDG--KLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 363 (397)
T ss_dssp CBSBSSCEEEEEECSSSSEEEEEETTS--EEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEeCCC--eEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence 01102233333 567666666555 999998876 233344441 00000 1223446666
Q ss_pred ecC----------CEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 309 KSG----------DKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 309 ~~g----------~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
++| ..++.. ..++.+.+||+++++
T Consensus 364 ~~g~~~~~~~~~~~~l~s~-----------~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 364 KKGWRSGMGADLNESLCCV-----------CLDRSIRWFREAGGK 397 (397)
T ss_dssp CTTTSBSTTCTTSCEEEEE-----------ETTTEEEEEEEEC--
T ss_pred cccccccccccccceEEEe-----------cCCCcEEEEEcCCCC
Confidence 776 567666 478899999988764
No 85
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=83.17 E-value=26 Score=31.51 Aligned_cols=190 Identities=9% Similarity=0.085 Sum_probs=100.3
Q ss_pred ccc-eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 108 CNG-LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 108 ~~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
.+| +|+....+..+.|||..+++....-... ......+.+.|..+ + ++... ....+.+|+..++
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~-~-l~s~s-------~d~~i~iwd~~~~ 171 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAH------VSEITKLKFFPSGE-A-LISSS-------QDMQLKIWSVKDG 171 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEEETTSS------SSCEEEEEECTTSS-E-EEEEE-------TTSEEEEEETTTC
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceeeecccc------cCccEEEEECCCCC-E-EEEEe-------CCCeEEEEeCCCC
Confidence 344 5555555678999999998877653322 33556677777543 2 22222 2457888888765
Q ss_pred ce-EEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEE----
Q 043816 187 SS-RRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMG---- 258 (378)
Q Consensus 187 ~W-~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~---- 258 (378)
.= +... .- ...-.++.+ +|.....+..+ ..|..+|+.+.+. ..+..+..... . -..+.
T Consensus 172 ~~~~~~~-~h----~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~--~-v~~~~~~~~ 237 (420)
T 3vl1_A 172 SNPRTLI-GH----RATVTDIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHD--G-VNSIALFVG 237 (420)
T ss_dssp CCCEEEE-CC----SSCEEEEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTC--C-EEEEEEEEC
T ss_pred cCceEEc-CC----CCcEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCC--C-ccEEEEecC
Confidence 31 1111 00 000012222 45443333322 2388899886654 33333222110 0 11111
Q ss_pred ------------------EeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCC-EEEEeec
Q 043816 259 ------------------NFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGD-KVLVDKF 319 (378)
Q Consensus 259 ------------------~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~ 319 (378)
..+|++.+++..+. .+.+|.+... .....+.... .....-+++.++|. .++..
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~g-- 309 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG--VITVHNVFSK-EQTIQLPSKF---TCSCNSLTVDGNNANYIYAG-- 309 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS--CEEEEETTTC-CEEEEECCTT---SSCEEEEEECSSCTTEEEEE--
T ss_pred CcceeeecccCcccceEEcCCCCEEEEEcCCC--eEEEEECCCC-ceeEEccccc---CCCceeEEEeCCCCCEEEEE--
Confidence 12566666666555 8999988761 1222222210 11234466677777 77776
Q ss_pred cCCCccccccCCcEEEEEECCCCe
Q 043816 320 LYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 320 ~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
..++.+.+||+++++
T Consensus 310 ---------~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 310 ---------YENGMLAQWDLRSPE 324 (420)
T ss_dssp ---------ETTSEEEEEETTCTT
T ss_pred ---------eCCCeEEEEEcCCCc
Confidence 477899999999864
No 86
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=82.38 E-value=27 Score=31.24 Aligned_cols=99 Identities=12% Similarity=0.269 Sum_probs=57.5
Q ss_pred EEEEEECCCceEee-ec--CCCCCCCCCCCeeEEEE--eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCcccccee
Q 043816 227 LIVAFDLKSEEFFE-VP--LPHLENRDSGNLMYMGN--FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTY 301 (378)
Q Consensus 227 ~il~fD~~~~~~~~-i~--~P~~~~~~~~~~~~l~~--~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~ 301 (378)
.|..+|+.+.+-.. +. .|..-. .. -..+.. .++.+.+.+..+. .+.+|.+...-..+..+... ...
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~--~~-v~~~~~~~~~~~~l~sgs~D~--~v~~wd~~~~~~~~~~~~~h----~~~ 251 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHT--AD-VLSLSINSLNANMFISGSCDT--TVRLWDLRITSRAVRTYHGH----EGD 251 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCC--SC-EEEEEECSSSCCEEEEEETTS--CEEEEETTTTCCCCEEECCC----SSC
T ss_pred cEEEEEcCCCcEEEEeecccCCCCc--cC-eEEEEeecCCCCEEEEEECCC--eEEEEECCCCCcceEEECCc----CCC
Confidence 38889998765433 32 222211 11 223332 2677777777666 99999986411122222210 111
Q ss_pred eEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 302 AKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 302 ~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
..-+++.++|..++.. ..++.+..||+++++..
T Consensus 252 v~~v~~~p~~~~l~s~-----------s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTG-----------SDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp CCEEEECTTSSEEEEE-----------CSSSCEEEEETTTTEEE
T ss_pred eEEEEEecCCCeEEEE-----------cCCCeEEEEECCCCcEE
Confidence 2336667788877777 47788999999988766
No 87
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=82.28 E-value=39 Score=33.05 Aligned_cols=196 Identities=11% Similarity=0.085 Sum_probs=100.5
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC-ceEEeeccCCc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN-SSRRIRVDFPY 197 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~-~W~~~~~~~p~ 197 (378)
..++++|..+++...+...... ......+.+.|+++ +-++. ... .......+.+++..++ ..+.+...-..
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~-~l~~~-~~~--~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPK----EKFLTNLSWSPDEN-ILYVA-EVN--RAQNECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCT----TCEEEEEEECTTSS-EEEEE-EEC--TTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred eEEEEEECCCCceEeeccCCCC----ceeEeeEEEECCCC-EEEEE-EeC--CCCCeeEEEEEECCCCceeeEEEEccCC
Confidence 4799999999987776543211 23455566666544 22222 211 1123467888888888 77665411011
Q ss_pred cccCCCCceEE----CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeE-EEEe-CC-eEEEEEec
Q 043816 198 YFSHPRDGTFA----RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMY-MGNF-SG-CLYFSCFC 270 (378)
Q Consensus 198 ~~~~~~~~v~~----~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~-l~~~-~G-~L~l~~~~ 270 (378)
.......++.+ +|.+.+.+..+ ....|..+|..++....+..... . ... +... +| .|++....
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~----g~~~l~~~~~~~~~~~~l~~~~~-----~-v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRD----GWNHLYLYDTTGRLIRQVTKGEW-----E-VTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTT----SSCEEEEEETTSCEEEECCCSSS-----C-EEEEEEECTTSSEEEEEESS
T ss_pred CeECccCCceeecCCCCEEEEEEccC----CccEEEEEECCCCEEEecCCCCe-----E-EEeeeEEcCCCCEEEEEecC
Confidence 00000112222 78866655332 23468888877776665532111 1 222 3333 45 45555554
Q ss_pred CCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 271 DYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 271 ~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
.......||..+- . .+...+.. ......+.+.++|..+++.... ......++.+|+++++.+
T Consensus 377 ~~~~~~~l~~~d~~~-~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~-------~~~p~~i~l~d~~~~~~~ 439 (706)
T 2z3z_A 377 ASPLERHFYCIDIKG-GKTKDLTP-----ESGMHRTQLSPDGSAIIDIFQS-------PTVPRKVTVTNIGKGSHT 439 (706)
T ss_dssp SCTTCBEEEEEETTC-CCCEESCC-----SSSEEEEEECTTSSEEEEEEEC-------SSCSCEEEEEESSSCEEE
T ss_pred CCCceEEEEEEEcCC-CCceeccC-----CCceEEEEECCCCCEEEEEecC-------CCCCcEEEEEECCCCeEe
Confidence 4333567777653 1 11222222 1112346667788877665210 012356999999888743
No 88
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=82.24 E-value=25 Score=30.82 Aligned_cols=187 Identities=14% Similarity=0.207 Sum_probs=96.2
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc--e
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS--S 188 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~--W 188 (378)
+|+....+..+.|||..+++....-+.. ......+.+.|.+ .+-+.+ . ....+.+|+..++. .
T Consensus 69 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~s~-~-------~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYTTNKVHAIPLR------SSWVMTCAYAPSG-NYVACG-G-------LDNICSIYNLKTREGNV 133 (340)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECS------SSCEEEEEECTTS-SEEEEE-E-------TTCEEEEEETTTCSBSC
T ss_pred EEEEEeCCCcEEEEECCCCCcceEeecC------CccEEEEEECCCC-CEEEEE-e-------CCCeEEEEECccCCCcc
Confidence 3443445678999999887755422221 2234556666643 332222 1 24567888876642 2
Q ss_pred EEeeccCCccccCCCCce--EECCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-CCeE
Q 043816 189 RRIRVDFPYYFSHPRDGT--FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF-SGCL 264 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v--~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~-~G~L 264 (378)
+... .+... ...-.++ .-+|.+ +....+ ..|..+|+.+.+... +..... . -..+... +|++
T Consensus 134 ~~~~-~~~~h-~~~v~~~~~~~~~~l--~s~s~d-----~~i~~wd~~~~~~~~~~~~h~~-----~-v~~~~~~~~~~~ 198 (340)
T 1got_B 134 RVSR-ELAGH-TGYLSCCRFLDDNQI--VTSSGD-----TTCALWDIETGQQTTTFTGHTG-----D-VMSLSLAPDTRL 198 (340)
T ss_dssp EEEE-EEECC-SSCEEEEEEEETTEE--EEEETT-----SCEEEEETTTTEEEEEECCCSS-----C-EEEEEECTTSSE
T ss_pred eeEE-EecCC-CccEEEEEECCCCcE--EEEECC-----CcEEEEECCCCcEEEEEcCCCC-----c-eEEEEECCCCCE
Confidence 2221 11100 0000011 123432 223222 238899998765433 322111 1 2233333 5677
Q ss_pred EEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeE
Q 043816 265 YFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRA 344 (378)
Q Consensus 265 ~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~ 344 (378)
.+.+..+. .+.+|.+.. ......+... .....-+++.++|..++.. ..++.+.+||+++++.
T Consensus 199 l~sg~~d~--~v~~wd~~~-~~~~~~~~~h----~~~v~~v~~~p~~~~l~s~-----------s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 199 FVSGACDA--SAKLWDVRE-GMCRQTFTGH----ESDINAICFFPNGNAFATG-----------SDDATCRLFDLRADQE 260 (340)
T ss_dssp EEEEETTS--CEEEEETTT-CSEEEEECCC----SSCEEEEEECTTSSEEEEE-----------ETTSCEEEEETTTTEE
T ss_pred EEEEeCCC--cEEEEECCC-CeeEEEEcCC----cCCEEEEEEcCCCCEEEEE-----------cCCCcEEEEECCCCcE
Confidence 66666666 999998866 1122233220 1123346677788877777 4778899999988765
Q ss_pred E
Q 043816 345 A 345 (378)
Q Consensus 345 ~ 345 (378)
.
T Consensus 261 ~ 261 (340)
T 1got_B 261 L 261 (340)
T ss_dssp E
T ss_pred E
Confidence 4
No 89
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=81.90 E-value=27 Score=30.93 Aligned_cols=201 Identities=8% Similarity=0.019 Sum_probs=96.9
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCC-------CCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEc
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWS-------DFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSL 183 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~-------~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 183 (378)
+|+....+..+.|||..+++......... ....+......+.+.+..+.+-+.+- ....+.+|+.
T Consensus 58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--------~d~~i~iwd~ 129 (408)
T 4a11_B 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS--------FDKTLKVWDT 129 (408)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE--------TTSEEEEEET
T ss_pred EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe--------CCCeEEEeeC
Confidence 33333345678888887766543321100 00011445666777764444333221 2457888888
Q ss_pred CCCceEEeeccCCccccC-CCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEe-
Q 043816 184 KSNSSRRIRVDFPYYFSH-PRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNF- 260 (378)
Q Consensus 184 ~t~~W~~~~~~~p~~~~~-~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~- 260 (378)
.++.-...- ..+..... ......-+|.+...+..+ ..|..+|+.+.... .+.... ..-..+...
T Consensus 130 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~~~~~------~~v~~~~~~~ 196 (408)
T 4a11_B 130 NTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHILQGHR------QEILAVSWSP 196 (408)
T ss_dssp TTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEECCCC------SCEEEEEECS
T ss_pred CCCccceec-cCCCceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeeecCCC------CcEEEEEECC
Confidence 876543322 11111000 000001123333333322 23888998765432 222111 102223333
Q ss_pred CCe-EEEEEecCCCCcEEEEEEcCceeeeEEEec----------Cc-cccceeeEEEEEeecCCEEEEeeccCCCccccc
Q 043816 261 SGC-LYFSCFCDYPEPVDIWIMKESWTKVFSFAG----------GV-FGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEG 328 (378)
Q Consensus 261 ~G~-L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~----------~~-~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~ 328 (378)
+|. +.+++..+. .+.+|.+...-.....+.. .. ........-+.+.++|..++..
T Consensus 197 ~~~~ll~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------- 263 (408)
T 4a11_B 197 RYDYILATASADS--RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV----------- 263 (408)
T ss_dssp SCTTEEEEEETTS--CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE-----------
T ss_pred CCCcEEEEEcCCC--cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe-----------
Confidence 444 555555555 8999998761111222211 00 0111233446677788888877
Q ss_pred cCCcEEEEEECCCCeEE
Q 043816 329 INKWELDWYDLQNQRAA 345 (378)
Q Consensus 329 ~~~~~l~~yd~~t~~~~ 345 (378)
..++.+.+||+++++..
T Consensus 264 ~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENT 280 (408)
T ss_dssp ETTSCEEEEETTTCCBC
T ss_pred cCCCeEEEEECCCCccc
Confidence 46788999999987643
No 90
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=81.70 E-value=26 Score=30.49 Aligned_cols=190 Identities=9% Similarity=-0.062 Sum_probs=95.5
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce-EEeeccCC
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS-RRIRVDFP 196 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W-~~~~~~~p 196 (378)
...+.++|+.|++....-+.... ..++.+++.++ + ++.... ....+.+++..++.- +.+...-.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~-------~~~~~~s~dg~-~-l~v~~~------~~~~v~~~d~~~~~~~~~~~~~~~ 132 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLK-------PFGATINNTTQ-T-LWFGNT------VNSAVTAIDAKTGEVKGRLVLDDR 132 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-------CCSEEEETTTT-E-EEEEET------TTTEEEEEETTTCCEEEEEESCCC
T ss_pred CccEEEEcCCCCeEEEEEecCCC-------cceEEECCCCC-E-EEEEec------CCCEEEEEeCCCCeeEEEEecCCC
Confidence 44799999999886643222111 12345666544 2 222211 234788999888753 22221101
Q ss_pred ccc--cCC--CCceEE--CCe-eEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEeCCeEEEEE
Q 043816 197 YYF--SHP--RDGTFA--RGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNFSGCLYFSC 268 (378)
Q Consensus 197 ~~~--~~~--~~~v~~--~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~~G~L~l~~ 268 (378)
... ... -.++.+ +|. +|...... ...|..+|+.+.+.. .++.+.... . .+.+ ..+|+..++.
T Consensus 133 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~---~-~~~~-s~dg~~l~~~ 202 (353)
T 3vgz_A 133 KRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKMS---T-GLAL-DSEGKRLYTT 202 (353)
T ss_dssp CCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTTC---C-CCEE-ETTTTEEEEE
T ss_pred ccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCcc---c-eEEE-CCCCCEEEEE
Confidence 000 000 012333 565 44443222 235999999876553 344221111 0 2222 2345443443
Q ss_pred ecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 269 FCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 269 ~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
.... .+.+|.++. ......+.....+......-+++.++|+.+++.. .....+..||+++++..
T Consensus 203 ~~~~--~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~----------~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 203 NADG--ELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITD----------SKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CTTS--EEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE----------SSSSEEEEEETTTCCEE
T ss_pred cCCC--eEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe----------CCCCEEEEEECCCCcEE
Confidence 3333 777777655 2233334431111112233467778898887773 34589999999998876
No 91
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=81.68 E-value=28 Score=30.90 Aligned_cols=193 Identities=9% Similarity=0.014 Sum_probs=90.7
Q ss_pred ccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 108 CNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
.+|-.++.. .+..+.|||..|++...--... ...+..+.+.+....+ ++... ....+.+++.+++
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h------~~~V~~~~~~~~~~~~-l~s~s-------~D~~v~iwd~~~~ 202 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH------AAQVTCVAASPHKDSV-FLSCS-------EDNRILLWDTRCP 202 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECSSCTTE-EEEEE-------TTSCEEEEETTSS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc------CCceEEEEecCCCCCc-eeeec-------ccccccccccccc
Confidence 355444433 5668999999998876532221 2344555666554432 22221 2346788888776
Q ss_pred ceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe-CC
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF-SG 262 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~-~G 262 (378)
.-...- ..... .....++.+ ++.-+...+..+ ..|..+|+.+.+. ..+...... -..+... +|
T Consensus 203 ~~~~~~-~~~~~-~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~~~~~~~~h~~~------v~~v~fsp~g 269 (344)
T 4gqb_B 203 KPASQI-GCSAP-GYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTSCVLSSAVHSQC------VTGLVFSPHS 269 (344)
T ss_dssp SCEEEC-C-----CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--CCEEEECCSSC------EEEEEECSSS
T ss_pred ceeeee-eccee-eccceeeeecCCCCcceEEeccC-----CcEEEEECCCCcEEEEEcCCCCC------EEEEEEccCC
Confidence 432211 00100 000012322 122222333322 2488889876543 223221111 2223333 45
Q ss_pred -eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 263 -CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 263 -~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
++.+.+..+. .+.||.++. .+..++.- . .....-++++++|..++... ..++.+.+|++.+
T Consensus 270 ~~~lasgs~D~--~i~vwd~~~--~~~~~~~~-H---~~~V~~v~~sp~~~~llas~----------s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 270 VPFLASLSEDC--SLAVLDSSL--SELFRSQA-H---RDFVRDATWSPLNHSLLTTV----------GWDHQVVHHVVPT 331 (344)
T ss_dssp SCCEEEEETTS--CEEEECTTC--CEEEEECC-C---SSCEEEEEECSSSTTEEEEE----------ETTSCEEEEECCC
T ss_pred CeEEEEEeCCC--eEEEEECCC--CcEEEEcC-C---CCCEEEEEEeCCCCeEEEEE----------cCCCeEEEEECCC
Confidence 4544455555 899997655 12222221 0 11233466667776555331 4688999999988
Q ss_pred CeEE
Q 043816 342 QRAA 345 (378)
Q Consensus 342 ~~~~ 345 (378)
+.+.
T Consensus 332 ~~~~ 335 (344)
T 4gqb_B 332 EPLP 335 (344)
T ss_dssp ----
T ss_pred CCCC
Confidence 7655
No 92
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=81.47 E-value=29 Score=30.97 Aligned_cols=193 Identities=10% Similarity=-0.017 Sum_probs=99.6
Q ss_pred ecccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 106 DTCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 106 ~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
+..+|.|...+ ....++..++.++....+.... .....++.+|+.++. +..... ....+++++..
T Consensus 81 d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~------~~~p~glavd~~~g~--ly~~d~------~~~~I~~~~~d 146 (349)
T 3v64_C 81 HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG------LESPGGLAVDWVHDK--LYWTDS------GTSRIEVANLD 146 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------CSCCCEEEEETTTTE--EEEEET------TTTEEEEEETT
T ss_pred eccccEEEEEeccCCceEEEecCCCCceEEEeCC------CCCccEEEEecCCCe--EEEEcC------CCCeEEEEcCC
Confidence 44567776666 3457888888877655443222 122356777876553 222221 23467777776
Q ss_pred CCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE--
Q 043816 185 SNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-- 259 (378)
Q Consensus 185 t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-- 259 (378)
...-+.+. . .....+ .++.+ +|.+||..... ...|..+|+....-..+ ...... . ---|+.
T Consensus 147 G~~~~~l~-~--~~l~~P-~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~-~~~~~~---~-PnGla~d~ 212 (349)
T 3v64_C 147 GAHRKVLL-W--QSLEKP-RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRII-ADTHLF---W-PNGLTIDY 212 (349)
T ss_dssp SCSCEEEE-C--TTCSCE-EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEES-CCSSCS---C-EEEEEEET
T ss_pred CCceEEEE-e--CCCCCc-ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEE-EECCCC---C-cceEEEeC
Confidence 54333322 1 111111 13333 58999986443 24699999876543332 111111 1 222444
Q ss_pred eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 260 FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 260 ~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.+|+||++..... .|....++.. ....+-.. ....|.++.-.++.|++.. .....+..+|.
T Consensus 213 ~~~~lY~aD~~~~--~I~~~~~dG~--~~~~~~~~-----~~~~P~giav~~~~ly~td----------~~~~~V~~~~~ 273 (349)
T 3v64_C 213 AGRRMYWVDAKHH--VIERANLDGS--HRKAVISQ-----GLPHPFAITVFEDSLYWTD----------WHTKSINSANK 273 (349)
T ss_dssp TTTEEEEEETTTT--EEEEEETTSC--SCEEEECS-----SCSSEEEEEEETTEEEEEE----------TTTTEEEEEET
T ss_pred CCCEEEEEECCCC--EEEEEeCCCC--ceEEEEeC-----CCCCceEEEEECCEEEEec----------CCCCeEEEEEc
Confidence 3678888876544 5655555441 11111110 0123444433456777774 45678999995
Q ss_pred CCCeEE
Q 043816 340 QNQRAA 345 (378)
Q Consensus 340 ~t~~~~ 345 (378)
.+++..
T Consensus 274 ~~G~~~ 279 (349)
T 3v64_C 274 FTGKNQ 279 (349)
T ss_dssp TTCCSC
T ss_pred cCCCcc
Confidence 554443
No 93
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=81.31 E-value=26 Score=30.41 Aligned_cols=196 Identities=9% Similarity=0.068 Sum_probs=96.3
Q ss_pred cc-eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 109 NG-LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 109 ~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
+| +|+....+..+.|||..+++...+... ......+.+.+..+.-.++... ....+.+|+.+++.
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQH-------DAPVKTIHWIKAPNYSCVMTGS-------WDKTLKFWDTRSSN 162 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEEC-------SSCEEEEEEEECSSCEEEEEEE-------TTSEEEEECSSCSS
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCceeeccc-------cCceEEEEEEeCCCCCEEEEcc-------CCCcEEEEECCCCc
Confidence 44 444444567899999999987765332 2334445553222222233222 24568888887753
Q ss_pred eEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCce--EeeecCCCCCCCCCCCeeEEEEeC---C
Q 043816 188 SRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE--FFEVPLPHLENRDSGNLMYMGNFS---G 262 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~l~~~~---G 262 (378)
-...- ..+. ....+...+.....+.... .+..+|+.... +..+..+..... . ...+.... .
T Consensus 163 ~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~ 228 (368)
T 3mmy_A 163 PMMVL-QLPE----RCYCADVIYPMAVVATAER------GLIVYQLENQPSEFRRIESPLKHQH--R-CVAIFKDKQNKP 228 (368)
T ss_dssp CSEEE-ECSS----CEEEEEEETTEEEEEEGGG------CEEEEECSSSCEEEEECCCSCSSCE--E-EEEEEECTTSCE
T ss_pred EEEEE-ecCC----CceEEEecCCeeEEEeCCC------cEEEEEeccccchhhhccccccCCC--c-eEEEcccCCCCC
Confidence 21111 1111 1112222333333333322 38888887653 333333322210 0 11121111 1
Q ss_pred eEEEEEecCCCCcEEEEEEcC--ceeeeEEEecCcc--------ccceeeEEEEEeecCCEEEEeeccCCCccccccCCc
Q 043816 263 CLYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVF--------GIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~--------~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 332 (378)
...+++..+. .+.+|.++. .-.....+..... .......-+++.++|..++.. ..++
T Consensus 229 ~~~~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-----------~~dg 295 (368)
T 3mmy_A 229 TGFALGSIEG--RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV-----------GSDG 295 (368)
T ss_dssp EEEEEEETTS--EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE-----------ETTS
T ss_pred CeEEEecCCC--cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE-----------ccCC
Confidence 2233344444 899999976 1122233332000 000123446667788877777 4788
Q ss_pred EEEEEECCCCeEE
Q 043816 333 ELDWYDLQNQRAA 345 (378)
Q Consensus 333 ~l~~yd~~t~~~~ 345 (378)
.+.+||+++++..
T Consensus 296 ~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 296 RFSFWDKDARTKL 308 (368)
T ss_dssp CEEEEETTTTEEE
T ss_pred eEEEEECCCCcEE
Confidence 9999999988766
No 94
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=81.02 E-value=30 Score=30.81 Aligned_cols=190 Identities=10% Similarity=0.038 Sum_probs=94.3
Q ss_pred eecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 105 IDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
....+|.|.+......++..|+.||+.+.--+.+.... .... .+ +. +|+... ....+..|+..
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~--~~p~----~~---~~-~v~v~~-------~~g~l~~~d~~ 161 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL--SRPV----VS---DG-LVLIHT-------SNGQLQALNEA 161 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC--SCCE----EE---TT-EEEEEC-------TTSEEEEEETT
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE--cCCE----EE---CC-EEEEEc-------CCCeEEEEECC
Confidence 34457888777667789999999998653211111100 1111 11 12 232221 23467888887
Q ss_pred CCc--eEEeeccCCcc-ccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCc--eEeee-cCCCCCCC-C--CCCee
Q 043816 185 SNS--SRRIRVDFPYY-FSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSE--EFFEV-PLPHLENR-D--SGNLM 255 (378)
Q Consensus 185 t~~--W~~~~~~~p~~-~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~--~~~~i-~~P~~~~~-~--~~~~~ 255 (378)
++. |+... ..+.. .......+..+|.+|.-.. ...+.++|..+. .|+.- ..|..... + .....
T Consensus 162 tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~v~~g~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 233 (376)
T 3q7m_A 162 DGAVKWTVNL-DMPSLSLRGESAPTTAFGAAVVGGD-------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT 233 (376)
T ss_dssp TCCEEEEEEC-CC-----CCCCCCEEETTEEEECCT-------TTEEEEEETTTCCEEEEEECCC-----------CCCC
T ss_pred CCcEEEEEeC-CCCceeecCCCCcEEECCEEEEEcC-------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCC
Confidence 774 87755 22211 1112335667888776322 235999999754 45432 33322110 0 00012
Q ss_pred EEEEeCCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCc
Q 043816 256 YMGNFSGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332 (378)
Q Consensus 256 ~l~~~~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 332 (378)
.....+|.+++... .. .+..+..+. .|... .. . ... .. ..++.|++. ..++
T Consensus 234 ~p~~~~~~v~~~~~-~g--~l~~~d~~tG~~~w~~~----~~---~--~~~-~~--~~~~~l~~~-----------~~~g 287 (376)
T 3q7m_A 234 TPVVVNGVVFALAY-NG--NLTALDLRSGQIMWKRE----LG---S--VND-FI--VDGNRIYLV-----------DQND 287 (376)
T ss_dssp CCEEETTEEEEECT-TS--CEEEEETTTCCEEEEEC----CC---C--EEE-EE--EETTEEEEE-----------ETTC
T ss_pred CcEEECCEEEEEec-Cc--EEEEEECCCCcEEeecc----CC---C--CCC-ce--EECCEEEEE-----------cCCC
Confidence 22344666666542 22 444444433 45532 10 0 111 22 245677777 3567
Q ss_pred EEEEEECCCCeEE
Q 043816 333 ELDWYDLQNQRAA 345 (378)
Q Consensus 333 ~l~~yd~~t~~~~ 345 (378)
.++.+|.++++..
T Consensus 288 ~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 288 RVMALTIDGGVTL 300 (376)
T ss_dssp CEEEEETTTCCEE
T ss_pred eEEEEECCCCcEE
Confidence 8999999988765
No 95
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=80.34 E-value=27 Score=31.53 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=39.6
Q ss_pred EEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCC-EEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 276 VDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGD-KVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 276 i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
=+||+.+- ....+.+|+... ....+++.++|+ .++..+ ..++.|.+||.+|++..
T Consensus 298 ~~V~VID~~t~~vv~~i~~g~-----~p~~i~~s~Dg~~~l~v~~----------~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLGH-----DVDAISVAQDGGPDLYALS----------AGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CeEEEEECCCCEEEEEEECCC-----CcCeEEECCCCCeEEEEEc----------CCCCeEEEEECCCCCEE
Confidence 36888876 778888887621 233467788888 566552 24689999999999888
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=79.76 E-value=30 Score=30.01 Aligned_cols=72 Identities=4% Similarity=0.101 Sum_probs=36.7
Q ss_pred cceEEe-ecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCC-CCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 109 NGLIAL-KNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAV-SDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 109 ~Gll~~-~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~-~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
+|-.++ ...+..+.|||..+++...+-..... ...+..+.+.+. .+.+ ++... ....+.+++.+++
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH----~~~V~~v~~~~~~~~~~-l~s~s-------~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGH----EGPVWQVAWAHPMYGNI-LASCS-------YDRKVIIWREENG 91 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECC----SSCEEEEEECCGGGSSC-EEEEE-------TTSCEEEECCSSS
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC----CccEEEEEeCCCCCCCE-EEEEE-------CCCEEEEEECCCC
Confidence 443333 33466788999877654322211111 233445555432 2332 22221 2456888888888
Q ss_pred ceEEee
Q 043816 187 SSRRIR 192 (378)
Q Consensus 187 ~W~~~~ 192 (378)
.|....
T Consensus 92 ~~~~~~ 97 (316)
T 3bg1_A 92 TWEKSH 97 (316)
T ss_dssp CCCEEE
T ss_pred cceEEE
Confidence 776544
No 97
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=79.33 E-value=51 Score=32.44 Aligned_cols=197 Identities=9% Similarity=-0.046 Sum_probs=101.1
Q ss_pred eEEEEcCCCccee--ecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 120 DIALWNPSTKKHV--LLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 120 ~~~V~NP~T~~~~--~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
.+++++.-|++.. .+-..+.. .....+..+++++ +|.++..... . ....+.+.+..++.|+.+... ..
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~----~~~~~~~~~SpDG-~~l~~~~~~~--~--~~~~l~~~~~~~~~~~~l~~~-~~ 272 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGD----PTTFLQSDLSRDG-KYLFVYILRG--W--SENDVYWKRPGEKDFRLLVKG-VG 272 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCC----TTCEEEEEECTTS-CCEEEEEEET--T--TEEEEEEECTTCSSCEEEEEC-SS
T ss_pred EEEEEECCCCchhceEEEecCCC----CEEEEEEEECCCC-CEEEEEEeCC--C--CceEEEEEcCCCCceEEeecC-CC
Confidence 4899998887632 22222111 1234455666654 4554443321 0 234555556666778877621 11
Q ss_pred cccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCce---EeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCC
Q 043816 198 YFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE---FFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPE 274 (378)
Q Consensus 198 ~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~---~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~ 274 (378)
.....+..+|.+|+.+... .....|..+|+.+.. |..+-.+.... . ...+...+|+|.+....+.
T Consensus 273 ---~~~~~~~~~g~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~-l~~~~~~~~~lv~~~~~dg-- 340 (695)
T 2bkl_A 273 ---AKYEVHAWKDRFYVLTDEG---APRQRVFEVDPAKPARASWKEIVPEDSSA---S-LLSVSIVGGHLSLEYLKDA-- 340 (695)
T ss_dssp ---CCEEEEEETTEEEEEECTT---CTTCEEEEEBTTBCSGGGCEEEECCCSSC---E-EEEEEEETTEEEEEEEETT--
T ss_pred ---ceEEEEecCCcEEEEECCC---CCCCEEEEEeCCCCCccCCeEEecCCCCC---e-EEEEEEECCEEEEEEEECC--
Confidence 1111344577766554322 124579999997643 66653332111 0 2224445888888877766
Q ss_pred cEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 275 PVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 275 ~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
...||.++-.-.....+..+.. .....++..++|+.+++..... .....++.||+++++.+ .+.
T Consensus 341 ~~~l~~~~~~g~~~~~l~~~~~---~~v~~~~~s~d~~~l~~~~ss~-------~~P~~v~~~d~~~g~~~-~l~ 404 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTVQLPGV---GAASNLMGLEDLDDAYYVFTSF-------TTPRQIYKTSVSTGKSE-LWA 404 (695)
T ss_dssp EEEEEEEETTCCEEEECCCSSS---SEECCCBSCTTCSEEEEEEEET-------TEEEEEEEEETTTCCEE-EEE
T ss_pred EEEEEEEeCCCCeeEEecCCCC---eEEEEeecCCCCCEEEEEEcCC-------CCCCEEEEEECCCCcEE-EEe
Confidence 7778877521112333433110 0111122334666666552100 12357999999998877 654
No 98
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=78.99 E-value=32 Score=30.02 Aligned_cols=191 Identities=8% Similarity=-0.076 Sum_probs=92.4
Q ss_pred ceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc-e
Q 043816 110 GLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS-S 188 (378)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~-W 188 (378)
.+|+....+..+.|||..+++.......... ......+.+.+.+ .+-+++ . ....+.+|+..++. |
T Consensus 65 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~-~~l~~~-~-------~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRI----NRAARCVRWAPNE-KKFAVG-S-------GSRVISICYFEQENDW 131 (372)
T ss_dssp TEEEEEETTSCEEEEEEETTEEEEEEECCCC----SSCEEEEEECTTS-SEEEEE-E-------TTSSEEEEEEETTTTE
T ss_pred CEEEEEcCCCeEEEEECCCCeeeeeEEeecC----CCceeEEEECCCC-CEEEEE-e-------CCCEEEEEEecCCCcc
Confidence 3444444567899999988875443221111 2345556666653 332222 1 13456677666543 4
Q ss_pred EEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCc-------------------eEeeecCCCCC
Q 043816 189 RRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSE-------------------EFFEVPLPHLE 247 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~-------------------~~~~i~~P~~~ 247 (378)
.... .........-.++.+ +|.....+..+ ..|..+|+... ....+. ..
T Consensus 132 ~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 201 (372)
T 1k8k_C 132 WVCK-HIKKPIRSTVLSLDWHPNSVLLAAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SS- 201 (372)
T ss_dssp EEEE-EECTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CC-
T ss_pred eeee-eeecccCCCeeEEEEcCCCCEEEEEcCC------CCEEEEEcccccccccccccccccccchhhheEecC--CC-
Confidence 3333 111110111112222 45443333322 23888886421 111111 11
Q ss_pred CCCCCCeeEEEE-eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccc
Q 043816 248 NRDSGNLMYMGN-FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDED 326 (378)
Q Consensus 248 ~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~ 326 (378)
...-..+.. .+|++.++...+. .+.+|.++. ...+..+... .....-+.+.++|..+...
T Consensus 202 ---~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~--------- 262 (372)
T 1k8k_C 202 ---CGWVHGVCFSANGSRVAWVSHDS--TVCLADADK-KMAVATLASE----TLPLLAVTFITESSLVAAG--------- 262 (372)
T ss_dssp ---SSCEEEEEECSSSSEEEEEETTT--EEEEEEGGG-TTEEEEEECS----SCCEEEEEEEETTEEEEEE---------
T ss_pred ---CCeEEEEEECCCCCEEEEEeCCC--EEEEEECCC-CceeEEEccC----CCCeEEEEEecCCCEEEEE---------
Confidence 110222333 2566666655555 899999876 1223333331 1122335666677644444
Q ss_pred cccCCcEEEEEECCC--CeEE
Q 043816 327 EGINKWELDWYDLQN--QRAA 345 (378)
Q Consensus 327 ~~~~~~~l~~yd~~t--~~~~ 345 (378)
.++.+..||+++ ++|.
T Consensus 263 ---~d~~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 263 ---HDCFPVLFTYDSAAGKLS 280 (372)
T ss_dssp ---TTSSCEEEEEETTTTEEE
T ss_pred ---eCCeEEEEEccCcCceEE
Confidence 678899999988 8776
No 99
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=78.43 E-value=60 Score=32.81 Aligned_cols=180 Identities=11% Similarity=0.036 Sum_probs=93.4
Q ss_pred eeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCC
Q 043816 147 LVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGY 223 (378)
Q Consensus 147 ~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~ 223 (378)
...++.+|..++. |+... .....+++++.....-+.+. .-. +.. -.++.+ +|.|||.-...
T Consensus 472 ~P~GLAvD~~~~~--LY~tD------~~~~~I~v~~ldG~~~~~l~-~~~--l~~-P~gIaVDp~~g~LYwtD~g~---- 535 (791)
T 3m0c_C 472 APDGLAVDWIHSN--IYWTD------SVLGTVSVADTKGVKRKTLF-REN--GSK-PRAIVVDPVHGFMYWTDWGT---- 535 (791)
T ss_dssp CCCEEEEETTTTE--EEEEE------TTTTEEEEEETTSSSEEEEE-ECT--TCC-EEEEEEETTTTEEEEEECSS----
T ss_pred CcceeeeeecCCc--EEEEe------cCCCeEEEEeCCCCeEEEEE-eCC--CCC-cceEEEecCCCCEEEecCCC----
Confidence 3456777776552 33322 12447788888765544443 100 111 114555 58999986432
Q ss_pred CCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE--eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCcccccee
Q 043816 224 NGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN--FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTY 301 (378)
Q Consensus 224 ~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~--~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~ 301 (378)
...|.++++....-..+-. .... . -.-|+. .+|+||++..... .|....++..-..+. +... ...
T Consensus 536 -~~~I~~~~~dG~~~~~lv~-~~l~---~-P~GLavD~~~~~LYwaD~~~~--~I~~~d~dG~~~~~v-~~~~----~~l 602 (791)
T 3m0c_C 536 -PAKIKKGGLNGVDIYSLVT-ENIQ---W-PNGITLDLLSGRLYWVDSKLH--SISSIDVNGGNRKTI-LEDE----KRL 602 (791)
T ss_dssp -SCEEEEEETTSCCEEEEEC-SSCS---C-EEEEEEETTTTEEEEEETTTT--EEEEEETTSCSCEEE-EECT----TTT
T ss_pred -CCeEEEEecCCCceEEEEe-CCCC---C-ceEEEEecCCCeEEEEeCCCC--cEEEEecCCCceEEE-ecCC----Ccc
Confidence 1359999997655444321 1111 1 222433 3789999865443 555544444211111 1110 112
Q ss_pred eEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEeccCCCceeEEEEEecc
Q 043816 302 AKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSL 367 (378)
Q Consensus 302 ~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~sl 367 (378)
..|+++...++.|++.. .....|...|..+++-. .+-..+...- +.+.+|.+..
T Consensus 603 ~~P~glav~~~~lYwtD----------~~~~~I~~~dk~tG~~~-~~l~~~l~~P-~~i~v~h~~~ 656 (791)
T 3m0c_C 603 AHPFSLAVFEDKVFWTD----------IINEAIFSANRLTGSDV-NLLAENLLSP-EDMVLFHNLT 656 (791)
T ss_dssp SSEEEEEEETTEEEEEE----------TTTTEEEEEETTTCCCC-EEEECSCSCC-CCEEEESGGG
T ss_pred CCCCEEEEeCCEEEEEE----------CCCCEEEEEeCCCCcce-EEeecCCCCc-eeEeeecccc
Confidence 24556655667888884 45678999998777554 3333333222 4566666554
No 100
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=77.90 E-value=36 Score=29.92 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=60.2
Q ss_pred EEEEEECCCceEeeec----CCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCcccc
Q 043816 227 LIVAFDLKSEEFFEVP----LPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGI 298 (378)
Q Consensus 227 ~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~ 298 (378)
.|.++|+.+..+..+. .|.... . ...+... +|+..++........+.+|.++. .+..+..+...
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~~---~-~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g---- 305 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNAQ---G-SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG---- 305 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCCC---C-EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS----
T ss_pred eEEEEEecCCceEEeEEEecCCCCCC---C-cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC----
Confidence 4888998777665432 222211 1 2234333 67654444443123899999973 56666666541
Q ss_pred ceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEE--EECCCCeEEEEEE
Q 043816 299 FTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDW--YDLQNQRAAGQVT 349 (378)
Q Consensus 299 ~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~--yd~~t~~~~~~v~ 349 (378)
....-+++.++|+.|+... ..+..+.+ +|+++++++ .+.
T Consensus 306 -~~~~~~~~spdg~~l~~~~----------~~~~~v~v~~~d~~~g~~~-~~~ 346 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVAC----------RDTNVIQIFERDQATGLLT-DIK 346 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEE----------TTTTEEEEEEECTTTCCEE-ECS
T ss_pred -CCCceEEECCCCCEEEEEE----------CCCCCEEEEEEECCCCcEe-ecc
Confidence 1122367788998888773 23455555 688899988 553
No 101
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=77.38 E-value=58 Score=32.08 Aligned_cols=170 Identities=10% Similarity=0.036 Sum_probs=88.1
Q ss_pred eEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC--ceEEeeccCCccccCCCCce-EECCeeEEEEEeCCCCCCC
Q 043816 149 DGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN--SSRRIRVDFPYYFSHPRDGT-FARGHVHWLVLNEPEGYNG 225 (378)
Q Consensus 149 ~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~--~W~~~~~~~p~~~~~~~~~v-~~~G~lYwl~~~~~~~~~~ 225 (378)
.+..+.++ ++|.++... ... ....+.+++..++ .|+.+. . +.... ...+ .-++.+|+++..+. ..
T Consensus 237 ~~~~~SpD-g~~l~~~~~--~~~--~~~~i~~~d~~~~~~~~~~l~-~-~~~~~--~~~~~~~g~~l~~~t~~~~---~~ 304 (693)
T 3iuj_A 237 VGATVTED-DRFLLISAA--NST--SGNRLYVKDLSQENAPLLTVQ-G-DLDAD--VSLVDNKGSTLYLLTNRDA---PN 304 (693)
T ss_dssp EEEEECTT-SCEEEEEEE--SSS--SCCEEEEEETTSTTCCCEEEE-C-SSSSC--EEEEEEETTEEEEEECTTC---TT
T ss_pred EEEEEcCC-CCEEEEEEc--cCC--CCcEEEEEECCCCCCceEEEe-C-CCCce--EEEEeccCCEEEEEECCCC---CC
Confidence 44555554 445444433 111 1347778887665 788776 2 11110 0123 33567888765431 24
Q ss_pred CEEEEEECCCc---eEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceee
Q 043816 226 DLIVAFDLKSE---EFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYA 302 (378)
Q Consensus 226 ~~il~fD~~~~---~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~ 302 (378)
..|++.|+.+. .|+.+. |.... . . .+...++.|.+....+....|.+|.++..+. ..+..+.. ...
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~-~~~~~---~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~--~~l~~p~~---~~~ 373 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLI-PERQQ---V-L-TVHSGSGYLFAEYMVDATARVEQFDYEGKRV--REVALPGL---GSV 373 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEE-CCCSS---C-E-EEEEETTEEEEEEEETTEEEEEEECTTSCEE--EEECCSSS---SEE
T ss_pred CEEEEEeCCCCCccccEEEe-cCCCC---E-E-EEEEECCEEEEEEEECCeeEEEEEECCCCee--EEeecCCC---ceE
Confidence 57999999763 366542 22221 1 3 4455566777776666533555555544332 33443211 111
Q ss_pred EEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 303 KALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 303 ~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
..++...+++.+++..... .....++.||+++++.+ .+.
T Consensus 374 ~~~~~~~d~~~l~~~~ss~-------~tP~~l~~~d~~~g~~~-~l~ 412 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENY-------AQPPTLYRFEPKSGAIS-LYR 412 (693)
T ss_dssp EECCCCTTCSCEEEEEECS-------SSCCEEEEECTTTCCEE-EEE
T ss_pred EeeecCCCCCEEEEEecCC-------CCCCEEEEEECCCCeEE-EEE
Confidence 1222234566666652100 23378999999999887 665
No 102
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=77.24 E-value=36 Score=29.64 Aligned_cols=209 Identities=10% Similarity=0.087 Sum_probs=103.3
Q ss_pred ccc-eEEeec-CCceEEEEcCC-CcceeecCCCCC---C--CCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEE
Q 043816 108 CNG-LIALKN-GENDIALWNPS-TKKHVLLPKFWS---D--FDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIA 179 (378)
Q Consensus 108 ~~G-ll~~~~-~~~~~~V~NP~-T~~~~~LP~~~~---~--~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~ 179 (378)
.+| .|.+.. ....+.|++.. +++...+..... . ..........+.++|.++ ++... . ....+.
T Consensus 95 pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~---l~v~~-~-----~~~~v~ 165 (347)
T 3hfq_A 95 EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR---LAVID-L-----GSDKVY 165 (347)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC---EEEEE-T-----TTTEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc---EEEEe-C-----CCCEEE
Confidence 344 454444 45678888773 333332211110 0 000123455677777655 22221 1 234788
Q ss_pred EEEcC-CCceEEeeccCCccccCCCCceE--ECCe-eEEEEEeCCCCCCCCEEEEEECC--CceEeee----cCCCCCCC
Q 043816 180 VYSLK-SNSSRRIRVDFPYYFSHPRDGTF--ARGH-VHWLVLNEPEGYNGDLIVAFDLK--SEEFFEV----PLPHLENR 249 (378)
Q Consensus 180 vyss~-t~~W~~~~~~~p~~~~~~~~~v~--~~G~-lYwl~~~~~~~~~~~~il~fD~~--~~~~~~i----~~P~~~~~ 249 (378)
+|+.. ++...... .........-..+. -+|. +|... ... ..|..+|+. +.++..+ ..|.....
T Consensus 166 ~~~~~~~g~~~~~~-~~~~~~g~~p~~~~~spdg~~l~v~~-~~~-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 166 VYNVSDAGQLSEQS-VLTMEAGFGPRHLVFSPDGQYAFLAG-ELS-----SQIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp EEEECTTSCEEEEE-EEECCTTCCEEEEEECTTSSEEEEEE-TTT-----TEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred EEEECCCCcEEEee-eEEcCCCCCCceEEECCCCCEEEEEe-CCC-----CEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 88887 56655443 11110000001222 3576 45433 221 235555554 4565432 23433211
Q ss_pred CCCCeeEEEE-eCCe-EEEEEecCCCCcEEEEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcc
Q 043816 250 DSGNLMYMGN-FSGC-LYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDE 325 (378)
Q Consensus 250 ~~~~~~~l~~-~~G~-L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~ 325 (378)
... -..+.. .+|+ |++...... .+.+|.++. .+..+..++... ....-+++.++|..|++..
T Consensus 239 ~~~-~~~i~~spdG~~l~v~~~~~~--~v~v~~~~~~g~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~------- 304 (347)
T 3hfq_A 239 HNG-AAAIRLSHDGHFLYVSNRGYN--TLAVFAVTADGHLTLIQQISTEG----DFPRDFDLDPTEAFVVVVN------- 304 (347)
T ss_dssp CCE-EEEEEECTTSCEEEEEEETTT--EEEEEEECGGGCEEEEEEEECSS----SCCCEEEECTTSSEEEEEE-------
T ss_pred CCc-ceeEEECCCCCEEEEEeCCCC--EEEEEEECCCCcEEEeEEEecCC----CCcCeEEECCCCCEEEEEE-------
Confidence 011 222333 3576 545544444 899999975 556666665411 1123467788998888773
Q ss_pred ccccCCcEEEEE--ECCCCeEEEEEEE
Q 043816 326 DEGINKWELDWY--DLQNQRAAGQVTV 350 (378)
Q Consensus 326 ~~~~~~~~l~~y--d~~t~~~~~~v~~ 350 (378)
.....+..| |.++++++ .+.-
T Consensus 305 ---~~~~~v~v~~~d~~tg~l~-~~~~ 327 (347)
T 3hfq_A 305 ---QNTDNATLYARDLTSGKLS-LLQK 327 (347)
T ss_dssp ---TTTTEEEEEEECTTTCCEE-EEEE
T ss_pred ---cCCCcEEEEEEeCCCCeEE-eccc
Confidence 234667777 88899999 7763
No 103
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=76.72 E-value=54 Score=31.32 Aligned_cols=207 Identities=13% Similarity=0.049 Sum_probs=102.5
Q ss_pred cc-eEEeec-CCceEEEEcCCCcceee-cCCCCC--CCCC--CCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEE
Q 043816 109 NG-LIALKN-GENDIALWNPSTKKHVL-LPKFWS--DFDD--YADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVY 181 (378)
Q Consensus 109 ~G-ll~~~~-~~~~~~V~NP~T~~~~~-LP~~~~--~~~~--~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vy 181 (378)
+| +|.... .+..+.|+|..|++... ++.... .... ......++.+++..+ +.++... ....+.++
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~-~~~vs~~-------~~g~i~vv 307 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP-EFIVNVK-------ETGKVLLV 307 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS-EEEEEET-------TTTEEEEE
T ss_pred CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC-EEEEEEC-------CCCeEEEE
Confidence 44 444443 35678899988887654 332110 0000 011334455555443 3333321 23466777
Q ss_pred EcCCCce---EEeec-cCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeE
Q 043816 182 SLKSNSS---RRIRV-DFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMY 256 (378)
Q Consensus 182 ss~t~~W---~~~~~-~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~ 256 (378)
+..+..- ..++. ..|... ++.-+|...+.+.... ..|.++|+.+.+... ++...... .+....
T Consensus 308 d~~~~~~l~~~~i~~~~~~~~~-----~~spdg~~l~va~~~~-----~~v~v~D~~tg~l~~~i~~g~~ph--~g~g~~ 375 (543)
T 1nir_A 308 NYKDIDNLTVTSIGAAPFLHDG-----GWDSSHRYFMTAANNS-----NKVAVIDSKDRRLSALVDVGKTPH--PGRGAN 375 (543)
T ss_dssp ECTTSSSCEEEEEECCSSCCCE-----EECTTSCEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSBC--CTTCEE
T ss_pred EecCCCcceeEEeccCcCccCc-----eECCCCCEEEEEecCC-----CeEEEEECCCCeEEEeeccCCCCC--CCCCcc
Confidence 7665421 11110 111111 1222566444443322 248889998876543 34311111 110223
Q ss_pred EEEeC-CeEEEEEecCCCCcEEEEEEcC------ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcccccc
Q 043816 257 MGNFS-GCLYFSCFCDYPEPVDIWIMKE------SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGI 329 (378)
Q Consensus 257 l~~~~-G~L~l~~~~~~~~~i~iW~l~~------~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~ 329 (378)
+...+ |.+++ .......++.+|..+. .|..+.++.... .....+.++++|..|+..... +.+ ..
T Consensus 376 ~~~p~~g~~~~-s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g----~~~~~v~~~pdg~~l~v~~~~--~~~--~~ 446 (543)
T 1nir_A 376 FVHPKYGPVWS-TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG----GGSLFIKTHPKSSHLYVDTTF--NPD--AR 446 (543)
T ss_dssp EEETTTEEEEE-EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCCEEEECCTT--CSS--HH
T ss_pred cCCCCCccEEE-eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC----CCceEEEcCCCCCcEEEecCC--CCC--cc
Confidence 33334 55544 4432223899999875 399999998621 111236678899988887210 000 00
Q ss_pred CCcEEEEEECCCCeE
Q 043816 330 NKWELDWYDLQNQRA 344 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~ 344 (378)
.+..+.+||.+|.+.
T Consensus 447 ~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 447 ISQSVAVFDLKNLDA 461 (543)
T ss_dssp HHTCEEEEETTCTTS
T ss_pred cCceEEEEECCCCCC
Confidence 156899999987764
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=76.37 E-value=34 Score=28.90 Aligned_cols=189 Identities=11% Similarity=0.084 Sum_probs=92.3
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc-
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS- 187 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~- 187 (378)
+++|+....+..+.|||..+++....-... ......+.+.+.+ .+-+++- ....+.+++..+..
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~--------~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDDQWLGTVVYTG------QGFLNSVCYDSEK-ELLLFGG--------KDTMINGVPLFATSG 93 (313)
T ss_dssp TTEEEEEETTSEEEEEEESSSEEEEEEEEC------SSCEEEEEEETTT-TEEEEEE--------TTSCEEEEETTCCTT
T ss_pred CCEEEEEEcCCcEEEEECCCCEEEEEeecC------CccEEEEEECCCC-CEEEEec--------CCCeEEEEEeeecCC
Confidence 445555555678899998887655433222 2345556666643 3332221 13345666654421
Q ss_pred eEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEE
Q 043816 188 SRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFS 267 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~ 267 (378)
.+... .+.. ....-.++.++|.....+..+ ..|..+| ..+....+........ .......++.+.++
T Consensus 94 ~~~~~-~~~~-~~~~i~~~~~~~~~l~~~~~d------~~i~~~d-~~~~~~~~~~~~~~v~----~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 94 EDPLY-TLIG-HQGNVCSLSFQDGVVISGSWD------KTAKVWK-EGSLVYNLQAHNASVW----DAKVVSFSENKFLT 160 (313)
T ss_dssp SCC-C-EECC-CSSCEEEEEEETTEEEEEETT------SEEEEEE-TTEEEEEEECCSSCEE----EEEEEETTTTEEEE
T ss_pred CCccc-chhh-cccCEEEEEecCCEEEEEeCC------CCEEEEc-CCcEEEecccCCCcee----EEEEccCCCCEEEE
Confidence 11111 0000 001112455566654444332 2488888 2222223332211110 22223336777666
Q ss_pred EecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 268 CFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 268 ~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+..+. .+.+|.... ....+.... ......+.+.+++. ++.. ..++.+..||+++++..
T Consensus 161 ~~~d~--~i~i~d~~~---~~~~~~~~~---~~~i~~~~~~~~~~-~~~~-----------~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 161 ASADK--TIKLWQNDK---VIKTFSGIH---NDVVRHLAVVDDGH-FISC-----------SNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp EETTS--CEEEEETTE---EEEEECSSC---SSCEEEEEEEETTE-EEEE-----------ETTSEEEEEETTTCCEE
T ss_pred EECCC--CEEEEecCc---eEEEEeccC---cccEEEEEEcCCCe-EEEc-----------cCCCeEEEEECCchhhh
Confidence 66665 899997432 122222100 11233455566665 5555 37789999999987766
No 105
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=76.28 E-value=13 Score=37.01 Aligned_cols=141 Identities=12% Similarity=0.036 Sum_probs=68.0
Q ss_pred cEEEEEEcCCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCC
Q 043816 176 TEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSG 252 (378)
Q Consensus 176 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~ 252 (378)
..+.+++..+..-+.+. . ...... .++.+ +|.|||..... ...|.++|+....-..+-. ..... +.
T Consensus 475 ~~I~v~d~dg~~~~~l~-~--~~~~~P-~giavDp~~g~ly~td~~~-----~~~I~~~~~dG~~~~~l~~-~~l~~-Pn 543 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLF-R--EQGSKP-RAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVT-ENIQW-PN 543 (699)
T ss_dssp SCEEEEBSSSCCEEEEC-C--CSSCCC-CCEECCSSSSCCEECCCSS-----SCCEEBCCSSSCCCCEESC-SSCSS-CC
T ss_pred CeEEEEecCCCceEEEE-e--CCCCCc-ceEEEccCCCcEEEcccCC-----CCeEEEEeCCCCCeeEEEe-CCCCC-cc
Confidence 45677776654333332 1 111111 24544 58999975322 1348888886543333211 01110 00
Q ss_pred CeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCc
Q 043816 253 NLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332 (378)
Q Consensus 253 ~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 332 (378)
.+.+-..+++||++..... .|....++.. .+..+-.. . .....|.++..+++.|++.. ....
T Consensus 544 -Glavd~~~~~LY~aD~~~~--~I~~~d~dG~--~~~~~~~~-~--~~~~~P~glavd~~~lywtd----------~~~~ 605 (699)
T 1n7d_A 544 -GITLDLLSGRLYWVDSKLH--SISSIDVNGG--NRKTILED-E--KRLAHPFSLAVFEDKVFWTD----------IINE 605 (699)
T ss_dssp -CEEECTTTCCEEEEETTTT--EEEEECSSSS--CCEEECCC-S--SSCSSCCCCEEETTEEEEEC----------STTT
T ss_pred -EEEEeccCCEEEEEecCCC--eEEEEccCCC--ceEEEEec-C--CcCCCceEeEEECCEEEEEe----------CCCC
Confidence 1222223578888775443 5555544431 11111110 0 01123444444556788773 3567
Q ss_pred EEEEEECCCCeEE
Q 043816 333 ELDWYDLQNQRAA 345 (378)
Q Consensus 333 ~l~~yd~~t~~~~ 345 (378)
.|..+|..+++..
T Consensus 606 ~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 606 AIFSANRLTGSDV 618 (699)
T ss_dssp CEEEEETTTEEEE
T ss_pred eEEEEEccCCCce
Confidence 8999999887766
No 106
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=76.09 E-value=46 Score=30.28 Aligned_cols=187 Identities=8% Similarity=0.013 Sum_probs=97.1
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
..+.++|.-++..+.|.... .....+.+.|.++ +++.... ......+.+++..++..+.+. ..+..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~-------~~v~~~~~Spdg~--~la~~s~----~~~~~~i~~~d~~tg~~~~l~-~~~~~ 224 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP-------QPLMSPAWSPDGS--KLAYVTF----ESGRSALVIQTLANGAVRQVA-SFPRH 224 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES-------SCEEEEEECTTSS--EEEEEEC----TTSSCEEEEEETTTCCEEEEE-CCSSC
T ss_pred ceEEEEcCCCCCCEEEeCCC-------CcceeeEEcCCCC--EEEEEEe----cCCCcEEEEEECCCCcEEEee-cCCCc
Confidence 58999998876666554322 2345566666543 2322221 112368899999998776655 22211
Q ss_pred ccCCCCceEE--CCe-eEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCeEEEEEec-CCC
Q 043816 199 FSHPRDGTFA--RGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFC-DYP 273 (378)
Q Consensus 199 ~~~~~~~v~~--~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~-~~~ 273 (378)
..++.+ +|. |.+..... ....|..+|+.+.+...+..... . ...+... +|+..++... ..
T Consensus 225 ----~~~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~~~l~~~~~-----~-~~~~~~spdg~~l~~~s~~~g- 289 (415)
T 2hqs_A 225 ----NGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDGRS-----N-NTEPTWFPDSQNLAFTSDQAG- 289 (415)
T ss_dssp ----EEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEECCCCSS-----C-EEEEEECTTSSEEEEEECTTS-
T ss_pred ----ccCEEEcCCCCEEEEEEecC----CCceEEEEECCCCCEEeCcCCCC-----c-ccceEECCCCCEEEEEECCCC-
Confidence 112222 565 44443322 12358999998876654432111 1 2233333 5654444333 33
Q ss_pred CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 274 EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 274 ~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
...||.++- .-. ..++... .....-+.+.++|+.|++... + .....++.+|+++++.+ .+.
T Consensus 290 -~~~i~~~d~~~~~-~~~l~~~----~~~~~~~~~spdG~~l~~~~~----~----~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 290 -RPQVYKVNINGGA-PQRITWE----GSQNQDADVSSDGKFMVMVSS----N----GGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp -SCEEEEEETTSSC-CEECCCS----SSEEEEEEECTTSSEEEEEEE----C----SSCEEEEEEETTTCCEE-ECC
T ss_pred -CcEEEEEECCCCC-EEEEecC----CCcccCeEECCCCCEEEEEEC----c----CCceEEEEEECCCCCEE-Eec
Confidence 445565543 111 1222211 112223566788888777731 0 11368999999999887 543
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=75.94 E-value=40 Score=29.46 Aligned_cols=200 Identities=12% Similarity=0.056 Sum_probs=99.3
Q ss_pred eEeecccceEEeecCCceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCC-CCCEEEEEEEEecCCCCcccEEEE
Q 043816 103 PIIDTCNGLIALKNGENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAV-SDDYKVVRLIQFGRGKVEYTEIAV 180 (378)
Q Consensus 103 ~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~-~~~ykVv~~~~~~~~~~~~~~~~v 180 (378)
.+.++.+|.+.+-.....+.++|..+++... +.... ......+.++|. .+.+-+.+ . ....+.+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~-s-------~dg~i~~ 153 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS------ANEIIYMYGHNEVNTEYFIWA-D-------NRGTIGF 153 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC------SSCEEEEECCC---CCEEEEE-E-------TTCCEEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC------CCCEEEEEcCCCCCCCEEEEE-e-------CCCcEEE
Confidence 3456667877776666678888888887332 22111 224556666662 23332222 2 2456788
Q ss_pred EEcCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEE
Q 043816 181 YSLKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMG 258 (378)
Q Consensus 181 yss~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~ 258 (378)
|+.+++.-.... ..... ..-.++.+ +|.+...+..+ ..|..+|+.+..-....+... . ...-..+.
T Consensus 154 wd~~~~~~~~~~-~~~~~--~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~~~-h--~~~v~~l~ 221 (343)
T 3lrv_A 154 QSYEDDSQYIVH-SAKSD--VEYSSGVLHKDSLLLALYSPD------GILDVYNLSSPDQASSRFPVD-E--EAKIKEVK 221 (343)
T ss_dssp EESSSSCEEEEE-CCCSS--CCCCEEEECTTSCEEEEECTT------SCEEEEESSCTTSCCEECCCC-T--TSCEEEEE
T ss_pred EECCCCcEEEEE-ecCCC--CceEEEEECCCCCEEEEEcCC------CEEEEEECCCCCCCccEEecc-C--CCCEEEEE
Confidence 888876543222 11110 01112322 45544433322 248999998765331112210 1 11023343
Q ss_pred Ee-CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEec---CccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcE
Q 043816 259 NF-SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAG---GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 259 ~~-~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~---~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~ 333 (378)
.. +|...+.+. +. .+.||.+.. . ....+.. .... ... ..+++.++|..++... ..+..
T Consensus 222 fs~~g~~l~s~~-~~--~v~iwd~~~~~--~~~~~~~~~~~~~~-~~~-~~~~~~~~g~~l~~~s----------~~d~~ 284 (343)
T 3lrv_A 222 FADNGYWMVVEC-DQ--TVVCFDLRKDV--GTLAYPTYTIPEFK-TGT-VTYDIDDSGKNMIAYS----------NESNS 284 (343)
T ss_dssp ECTTSSEEEEEE-SS--BEEEEETTSST--TCBSSCCCBC------CC-EEEEECTTSSEEEEEE----------TTTTE
T ss_pred EeCCCCEEEEEe-CC--eEEEEEcCCCC--cceeeccccccccc-ccc-eEEEECCCCCEEEEec----------CCCCc
Confidence 33 455555544 44 999999876 1 0011111 0000 000 3467778888888762 12667
Q ss_pred EEEEEC--CCCeEE
Q 043816 334 LDWYDL--QNQRAA 345 (378)
Q Consensus 334 l~~yd~--~t~~~~ 345 (378)
+.+|+. .++.|+
T Consensus 285 i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 285 LTIYKFDKKTKNWT 298 (343)
T ss_dssp EEEEEECTTTCSEE
T ss_pred EEEEEEcccccceE
Confidence 777766 555677
No 108
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=75.73 E-value=66 Score=31.89 Aligned_cols=186 Identities=11% Similarity=0.094 Sum_probs=95.0
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|.....+..+.|||..|++...--... ......+.+.|.++ + ++... ....+.+|+..++....
T Consensus 27 ~la~~~~~g~v~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~-~-l~~~~-------~dg~i~vw~~~~~~~~~ 91 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYETQVEVRSIQVT------ETPVRAGKFIARKN-W-IIVGS-------DDFRIRVFNYNTGEKVV 91 (814)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEEEGGGT-E-EEEEE-------TTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCEEEEEECCCCceEEEEecC------CCcEEEEEEeCCCC-E-EEEEe-------CCCeEEEEECCCCcEEE
Confidence 3444444567889998887665422211 23455667776543 2 22222 24578899988876533
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCc-eEee-ecCCCCCCCCCCCeeEEEEe--CCeE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSE-EFFE-VPLPHLENRDSGNLMYMGNF--SGCL 264 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~-~~~~-i~~P~~~~~~~~~~~~l~~~--~G~L 264 (378)
.-...... -.++.+ +|..-. ....+ ..|..+|+.++ .... +..... . -..+... +|.+
T Consensus 92 ~~~~~~~~----v~~~~~s~~~~~l~-~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~-----~-v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 92 DFEAHPDY----IRSIAVHPTKPYVL-SGSDD-----LTVKLWNWENNWALEQTFEGHEH-----F-VMCVAFNPKDPST 155 (814)
T ss_dssp EEECCSSC----EEEEEECSSSSEEE-EEETT-----SEEEEEEGGGTSEEEEEEECCSS-----C-EEEEEEETTEEEE
T ss_pred EEecCCCC----EEEEEEeCCCCEEE-EEcCC-----CEEEEEECCCCceEEEEEcCCCC-----c-EEEEEEEcCCCCE
Confidence 22011100 002222 343222 22222 35888898765 3322 221111 0 2233333 4556
Q ss_pred EEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEee--cCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 265 YFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSK--SGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 265 ~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
.+++..+. .+.+|.+.. .- ...+.... ......+.+.+ +|..++.. ..++.+..||+++
T Consensus 156 l~~~~~dg--~v~vwd~~~~~~--~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~-----------~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 156 FASGCLDR--TVKVWSLGQSTP--NFTLTTGQ---ERGVNYVDYYPLPDKPYMITA-----------SDDLTIKIWDYQT 217 (814)
T ss_dssp EEEEETTS--EEEEEETTCSSC--SEEEECCC---TTCCCEEEECCSTTCCEEEEE-----------CTTSEEEEEETTT
T ss_pred EEEEeCCC--eEEEEECCCCcc--eeEEecCC---CCCEEEEEEEECCCCCEEEEE-----------eCCCEEEEEECCC
Confidence 66655555 899999865 21 12222210 01122344454 77777777 4778999999998
Q ss_pred CeEE
Q 043816 342 QRAA 345 (378)
Q Consensus 342 ~~~~ 345 (378)
++..
T Consensus 218 ~~~~ 221 (814)
T 3mkq_A 218 KSCV 221 (814)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 8765
No 109
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=75.14 E-value=11 Score=33.50 Aligned_cols=140 Identities=6% Similarity=0.014 Sum_probs=69.1
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCce-Eeee-cCCCCCCCC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEE-FFEV-PLPHLENRD 250 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~-~~~i-~~P~~~~~~ 250 (378)
...+.+|+..++.|+.+. .+... ...-.++.+ +|.+-..+..+ ..|..+|+.+.. +..+ .+...
T Consensus 32 d~~i~iw~~~~~~~~~~~-~~~~h-~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~~~~~---- 99 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHAR-TFSDH-DKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQTLVLLRL---- 99 (377)
T ss_dssp SSCBCEEEEETTEEEECC-CBCCC-SSCEEEEEECTTTCCEEEEETT------SSEEEC------CCCCEEECCCC----
T ss_pred CCEEEEEEccCCceEEEE-EEecC-CceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeccc----
Confidence 345678888888777665 32211 000012222 34433333222 238888887765 3332 11111
Q ss_pred CCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcccc
Q 043816 251 SGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDE 327 (378)
Q Consensus 251 ~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~ 327 (378)
...-..+... +|++.+++..+. .+.+|.++. .|.....+.... .....-+++.++|..++..
T Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~~~---------- 164 (377)
T 3dwl_C 100 NRAATFVRWSPNEDKFAVGSGAR--VISVCYFEQENDWWVSKHLKRPL---RSTILSLDWHPNNVLLAAG---------- 164 (377)
T ss_dssp SSCEEEEECCTTSSCCEEEESSS--CEEECCC-----CCCCEEECSSC---CSCEEEEEECTTSSEEEEE----------
T ss_pred CCceEEEEECCCCCEEEEEecCC--eEEEEEECCcccceeeeEeeccc---CCCeEEEEEcCCCCEEEEE----------
Confidence 1102223222 566666666555 899999987 576666665311 1123346667788877777
Q ss_pred ccCCcEEEEEECCCC
Q 043816 328 GINKWELDWYDLQNQ 342 (378)
Q Consensus 328 ~~~~~~l~~yd~~t~ 342 (378)
..++.+..||++++
T Consensus 165 -~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 165 -CADRKAYVLSAYVR 178 (377)
T ss_dssp -ESSSCEEEEEECCS
T ss_pred -eCCCEEEEEEEEec
Confidence 36788999998643
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=74.44 E-value=39 Score=28.65 Aligned_cols=67 Identities=13% Similarity=0.338 Sum_probs=41.3
Q ss_pred cccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 107 TCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
|.+|+|.+.. ++.+.|||..|++...+-..... ...+..+.+.+.+ ++-+.+- ....+.+++.+++
T Consensus 34 S~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~----~~~V~~v~~~~~~-~~l~sgs--------~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 34 SSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP----GEYISSVAWIKEG-NYLAVGT--------SSAEVQLWDVQQQ 99 (318)
T ss_dssp CTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST----TCCEEEEEECTTS-SEEEEEE--------TTSEEEEEETTTT
T ss_pred CCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC----CCeEEEEEECCCC-CEEEEEE--------CCCcEEEeecCCc
Confidence 4567665543 66899999999987765333221 2345566776654 3333221 2457888888876
Q ss_pred c
Q 043816 187 S 187 (378)
Q Consensus 187 ~ 187 (378)
.
T Consensus 100 ~ 100 (318)
T 4ggc_A 100 K 100 (318)
T ss_dssp E
T ss_pred e
Confidence 4
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=74.39 E-value=73 Score=31.72 Aligned_cols=96 Identities=19% Similarity=0.297 Sum_probs=60.1
Q ss_pred EEEEEECCCceEeee-cCCCCCCCCCCCeeEEEEe-C--CeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCcccccee
Q 043816 227 LIVAFDLKSEEFFEV-PLPHLENRDSGNLMYMGNF-S--GCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTY 301 (378)
Q Consensus 227 ~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~l~~~-~--G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~ 301 (378)
.|..+|+.++.+..+ .+.... +.-..+... + |.+.+.+..+. .+.+|.++. .|.....+... ...
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~----~~V~~l~~s~~~~~~~l~s~s~Dg--~I~vwd~~~~~~~~~~~~~~h----~~~ 101 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYDG--KVLIWKEENGRWSQIAVHAVH----SAS 101 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCS----SCEEEEEECCTTSCSEEEEEETTS--CEEEEEEETTEEEEEEEECCC----SSC
T ss_pred cEEEEecCCCCCccceeccCCc----CceEEEEecCCCCCCEEEEEeCCC--eEEEEECCCCcccccccccCC----CCC
Confidence 488888876665543 222111 102223332 3 67766666666 999999988 77776666531 112
Q ss_pred eEEEEEeec--CCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 302 AKALAYSKS--GDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 302 ~~~~~~~~~--g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
..-+.+.++ |..++.. ..++.+.+||++++.
T Consensus 102 V~~v~~sp~~~~~~l~sg-----------s~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVA-----------SSDGKVSVVEFKENG 134 (753)
T ss_dssp EEEEEECCGGGCSEEEEE-----------ETTSEEEEEECCSSS
T ss_pred eEEEEECCCCCCCEEEEE-----------eCCCcEEEEEeecCC
Confidence 334566666 7888887 478899999998883
No 112
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=74.36 E-value=48 Score=29.62 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=51.1
Q ss_pred EEEEEECCCce--EeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC--ceeeeEEEecC--ccccce
Q 043816 227 LIVAFDLKSEE--FFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGG--VFGIFT 300 (378)
Q Consensus 227 ~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~--~~~~~~ 300 (378)
.|..+|+.+.. ...+...... . -..+...+|++.+....+. .+.+|.+.+ .-.....+... ......
T Consensus 314 ~i~vwd~~~~~~~~~~~~~~~~~----~-v~~~~~~~~~~l~s~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLINEGT----P-INNVYFAAGALFVSSGFDT--SIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp EEEEEETTCTTSCSEEEEESTTS----C-EEEEEEETTEEEEEETTTE--EEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred eEEEEEcCCCcCchhhhhccCCC----C-ceEEEeCCCCEEEEecCCc--cEEEEeccCCCCCccceeccCccEEccCCc
Confidence 58999997643 2333321111 1 2334455787666655555 999999976 11111111110 001112
Q ss_pred eeEEEEEeecCC---EEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 301 YAKALAYSKSGD---KVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 301 ~~~~~~~~~~g~---~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
...-+++.++|. .++.. ...+.+..|+++.
T Consensus 387 ~v~~~~~s~~~~~~g~l~a~-----------g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 387 AVSQFCYVSDDESNGEVLEV-----------GKNNFCALYNLSN 419 (420)
T ss_dssp CCCEEEEECCSSSSCEEEEE-----------ETTTEEEEEESCC
T ss_pred ceEEEEEccCCCCcceEEEE-----------cCCceEEEEeccC
Confidence 233355666666 45555 3678899998875
No 113
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=74.17 E-value=69 Score=31.34 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=96.1
Q ss_pred cccceEEe-ecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIAL-KNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~-~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
+.+|-+++ ...+..+.|||..+++....-... ...+..+.+.+.+.. ++... ....+.+++..+
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h------~~~v~~~~~s~~~~~--l~s~s-------~D~~i~iwd~~~ 503 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH------TKDVLSVAFSLDNRQ--IVSAS-------RDRTIKLWNTLG 503 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEECTTSSC--EEEEE-------TTSCEEEECTTS
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC------CCCEEEEEEeCCCCE--EEEEe-------CCCEEEEEECCC
Confidence 33554444 445678999999888765321111 234555666665432 22221 234566776544
Q ss_pred CceEEeeccCCccccCCCCceEE--CCe-eEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFA--RGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF- 260 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~--~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~- 260 (378)
..=..+. .........-.++.+ +|. -+.++...+ ..|..+|+.+.+... +... .+.-..+...
T Consensus 504 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~h------~~~v~~v~~sp 571 (694)
T 3dm0_A 504 ECKYTIS-EGGEGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKLRSTLAGH------TGYVSTVAVSP 571 (694)
T ss_dssp CEEEEEC-SSTTSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCEEEEECCC------SSCEEEEEECT
T ss_pred Ccceeec-cCCCCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcEEEEEcCC------CCCEEEEEEeC
Confidence 3211111 000000000012222 221 123333322 238889998765433 2221 1102233333
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
+|++.+.+..+. .+.||.+... ..+..+.. ......+++.+++..+... .+..+.+||++
T Consensus 572 dg~~l~sg~~Dg--~i~iwd~~~~-~~~~~~~~-----~~~v~~~~~sp~~~~l~~~------------~~~~i~iwd~~ 631 (694)
T 3dm0_A 572 DGSLCASGGKDG--VVLLWDLAEG-KKLYSLEA-----NSVIHALCFSPNRYWLCAA------------TEHGIKIWDLE 631 (694)
T ss_dssp TSSEEEEEETTS--BCEEEETTTT-EEEECCBC-----SSCEEEEEECSSSSEEEEE------------ETTEEEEEETT
T ss_pred CCCEEEEEeCCC--eEEEEECCCC-ceEEEecC-----CCcEEEEEEcCCCcEEEEE------------cCCCEEEEECC
Confidence 577777666666 9999998761 12222222 1123446667777665555 46679999999
Q ss_pred CCeEE
Q 043816 341 NQRAA 345 (378)
Q Consensus 341 t~~~~ 345 (378)
+++..
T Consensus 632 ~~~~~ 636 (694)
T 3dm0_A 632 SKSIV 636 (694)
T ss_dssp TTEEE
T ss_pred CCCCh
Confidence 99876
No 114
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=74.14 E-value=38 Score=28.42 Aligned_cols=196 Identities=13% Similarity=0.032 Sum_probs=97.6
Q ss_pred EeecccceEEeecC-CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEE
Q 043816 104 IIDTCNGLIALKNG-ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYS 182 (378)
Q Consensus 104 ~~~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vys 182 (378)
+.-..+|-+.+... ...+.++||. ++...++.+.. .....++.+|+... +.... . ....+..|+
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~-----~~~~~~i~~~~~g~---l~v~~-~-----~~~~i~~~~ 84 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTP-----DAKVMCLTISSDGE---VWFTE-N-----AANKIGRIT 84 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSST-----TCCEEEEEECTTSC---EEEEE-T-----TTTEEEEEC
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcc-----cCceeeEEECCCCC---EEEeC-C-----CCCeEEEEC
Confidence 33344566655553 5679999998 77766543221 12345566665432 22111 0 123456666
Q ss_pred cCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe
Q 043816 183 LKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF 260 (378)
Q Consensus 183 s~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~ 260 (378)
.. +..+... .|.... .-.++.+ +|.+|...... ..|..+|+ +.....+..|.... . -..+...
T Consensus 85 ~~-g~~~~~~--~~~~~~-~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~~~~~~~~~---~-~~~i~~~ 149 (299)
T 2z2n_A 85 KK-GIIKEYT--LPNPDS-APYGITEGPNGDIWFTEMNG------NRIGRITD-DGKIREYELPNKGS---Y-PSFITLG 149 (299)
T ss_dssp TT-SCEEEEE--CSSTTC-CEEEEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEECSSTTC---C-EEEEEEC
T ss_pred CC-CcEEEEe--CCCcCC-CceeeEECCCCCEEEEecCC------ceEEEECC-CCCEEEecCCCCCC---C-CceEEEc
Confidence 54 4454443 121111 1113444 47766543221 35999999 55666665553222 1 2334333
Q ss_pred -CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 261 -SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 261 -~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
+|+|++...... .+..|..+..... +.... ......-+++.++|. +++.. .....+..||+
T Consensus 150 ~~g~l~v~~~~~~--~i~~~~~~g~~~~---~~~~~--~~~~~~~i~~~~~g~-l~v~~----------~~~~~i~~~~~ 211 (299)
T 2z2n_A 150 SDNALWFTENQNN--AIGRITESGDITE---FKIPT--PASGPVGITKGNDDA-LWFVE----------IIGNKIGRITT 211 (299)
T ss_dssp TTSCEEEEETTTT--EEEEECTTCCEEE---EECSS--TTCCEEEEEECTTSS-EEEEE----------TTTTEEEEECT
T ss_pred CCCCEEEEeCCCC--EEEEEcCCCcEEE---eeCCC--CCCcceeEEECCCCC-EEEEc----------cCCceEEEECC
Confidence 578877654333 5555544223222 22210 111223355566666 45552 24678999999
Q ss_pred CCCeEEEEEE
Q 043816 340 QNQRAAGQVT 349 (378)
Q Consensus 340 ~t~~~~~~v~ 349 (378)
+++++ .+.
T Consensus 212 -~g~~~-~~~ 219 (299)
T 2z2n_A 212 -SGEIT-EFK 219 (299)
T ss_dssp -TCCEE-EEE
T ss_pred -CCcEE-EEE
Confidence 77777 543
No 115
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=73.70 E-value=39 Score=28.36 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=97.3
Q ss_pred EeecccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEE
Q 043816 104 IIDTCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYS 182 (378)
Q Consensus 104 ~~~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vys 182 (378)
+.-..+|-+.+.. ....+.++||. ++...++.+.. .....++..|+... +.... . ....+..|+
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~-----~~~~~~i~~~~~g~---l~v~~--~----~~~~v~~~d 89 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP-----DAKVMCLIVSSLGD---IWFTE--N----GANKIGKLS 89 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-----TCCEEEEEECTTSC---EEEEE--T----TTTEEEEEC
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC-----CCcceeEEECCCCC---EEEEe--c----CCCeEEEEC
Confidence 3334456555554 45679999998 77665543221 23445566665432 22111 0 134567777
Q ss_pred cCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-
Q 043816 183 LKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN- 259 (378)
Q Consensus 183 s~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~- 259 (378)
.. +.++... .+.... .-.++.+ +|.+|+..... ..|..+|.. .+...+.+|.... . -..+..
T Consensus 90 ~~-g~~~~~~--~~~~~~-~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~~~~~~~---~-~~~i~~d 154 (300)
T 2qc5_A 90 KK-GGFTEYP--LPQPDS-GPYGITEGLNGDIWFTQLNG------DRIGKLTAD-GTIYEYDLPNKGS---Y-PAFITLG 154 (300)
T ss_dssp TT-SCEEEEE--CSSTTC-CEEEEEECSTTCEEEEETTT------TEEEEECTT-SCEEEEECSSTTC---C-EEEEEEC
T ss_pred CC-CCeEEec--CCCCCC-CCccceECCCCCEEEEccCC------CeEEEECCC-CCEEEccCCCCCC---C-ceeEEEC
Confidence 77 6665444 121111 1113443 57776543222 359999998 6666555553222 1 233433
Q ss_pred eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 260 FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 260 ~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.+|+|++...... .+..+..+..... ..++. ......-+++.++|. +++.. .....+..||+
T Consensus 155 ~~g~l~v~~~~~~--~i~~~~~~g~~~~-~~~~~----~~~~~~~i~~d~~g~-l~v~~----------~~~~~i~~~~~ 216 (300)
T 2qc5_A 155 SDNALWFTENQNN--SIGRITNTGKLEE-YPLPT----NAAAPVGITSGNDGA-LWFVE----------IMGNKIGRITT 216 (300)
T ss_dssp TTSSEEEEETTTT--EEEEECTTCCEEE-EECSS----TTCCEEEEEECTTSS-EEEEE----------TTTTEEEEECT
T ss_pred CCCCEEEEecCCC--eEEEECCCCcEEE-eeCCC----CCCCcceEEECCCCC-EEEEc----------cCCCEEEEEcC
Confidence 3578777664333 4444443223322 11111 112223355555665 44442 24567888988
Q ss_pred CCCeEEEEE
Q 043816 340 QNQRAAGQV 348 (378)
Q Consensus 340 ~t~~~~~~v 348 (378)
++++. .+
T Consensus 217 -~g~~~-~~ 223 (300)
T 2qc5_A 217 -TGEIS-EY 223 (300)
T ss_dssp -TCCEE-EE
T ss_pred -CCcEE-EE
Confidence 55555 44
No 116
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=73.45 E-value=47 Score=29.12 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=76.0
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCCCC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENRDS 251 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~ 251 (378)
...+.+++..++.|.... .........-.++.+ +|..-.. ...+ ..|..+|..++.+..+ .+....
T Consensus 37 D~~i~iw~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~g~~l~s-~s~D-----~~v~iw~~~~~~~~~~~~~~~h~---- 105 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKS-VLSEGHQRTVRKVAWSPCGNYLAS-ASFD-----ATTCIWKKNQDDFECVTTLEGHE---- 105 (345)
T ss_dssp TSCEEEEEEETTEEEEEE-EECSSCSSCEEEEEECTTSSEEEE-EETT-----SCEEEEEECCC-EEEEEEECCCS----
T ss_pred CCeEEEEEcCCCcceeee-eeccccCCcEEEEEECCCCCEEEE-EECC-----CcEEEEEccCCCeEEEEEccCCC----
Confidence 456788888888776443 111111101012222 3443322 2222 1377788776655433 222111
Q ss_pred CCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccc
Q 043816 252 GNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEG 328 (378)
Q Consensus 252 ~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~ 328 (378)
..-..+... +|++.+.+..+. .+.||.++. .+..+..+... .....-+...++|+.++..
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~----------- 168 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDK--SVWVWEVDEEDEYECVSVLNSH----TQDVKHVVWHPSQELLASA----------- 168 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTS--CEEEEEECTTSCEEEEEEECCC----CSCEEEEEECSSSSCEEEE-----------
T ss_pred CCceEEEEeCCCCEEEEEECCC--eEEEEECCCCCCeEEEEEecCc----CCCeEEEEECCCCCEEEEE-----------
Confidence 102233333 577766666666 999999976 45444444431 1123345667788877777
Q ss_pred cCCcEEEEEECCCCeEE
Q 043816 329 INKWELDWYDLQNQRAA 345 (378)
Q Consensus 329 ~~~~~l~~yd~~t~~~~ 345 (378)
..++.+..||.+++.+.
T Consensus 169 s~d~~i~~w~~~~~~~~ 185 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWV 185 (345)
T ss_dssp ETTSCEEEEEEETTEEE
T ss_pred eCCCcEEEEEecCCCEE
Confidence 36778888998888765
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=72.91 E-value=53 Score=29.50 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=96.4
Q ss_pred cceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 109 NGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
+..+++.. ....+.++|+.+++....-+.. .....+.+++.++ +-++.-............+.+|+..++.
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKTKLEIRKTDKI-------GLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK 294 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEECCCC-------SEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred CCEEEEEecCCCcEEEEECCCCcEEEEecCC-------CCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc
Confidence 33444444 4568999999988776543322 2345666666543 3333222111000124578899988774
Q ss_pred eEEeeccCCccccCCCCceEE--CCe-eEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEe-CC
Q 043816 188 SRRIRVDFPYYFSHPRDGTFA--RGH-VHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNF-SG 262 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v~~--~G~-lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~-~G 262 (378)
-.... ..+. ...++.+ +|. +|..+... ..|..+|+.+.+.. .++.. . . -..+... +|
T Consensus 295 ~~~~~-~~~~----~~~~~~~~~~g~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~--~----~-~~~~~~s~dg 356 (433)
T 3bws_A 295 LIDTI-GPPG----NKRHIVSGNTENKIYVSDMCC------SKIEVYDLKEKKVQKSIPVF--D----K-PNTIALSPDG 356 (433)
T ss_dssp EEEEE-EEEE----CEEEEEECSSTTEEEEEETTT------TEEEEEETTTTEEEEEEECS--S----S-EEEEEECTTS
T ss_pred EEeec-cCCC----CcceEEECCCCCEEEEEecCC------CEEEEEECCCCcEEEEecCC--C----C-CCeEEEcCCC
Confidence 32221 1011 0012222 453 44443222 35999999876543 33321 1 1 2233333 46
Q ss_pred eEEEEEecC-C------------CCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcccccc
Q 043816 263 CLYFSCFCD-Y------------PEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGI 329 (378)
Q Consensus 263 ~L~l~~~~~-~------------~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~ 329 (378)
+..++.... . ...+.+|.++. ...+..+.. ......+++.++|+.|+... .
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~----------~ 420 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEA-----GNQPTGLDVSPDNRYLVISD----------F 420 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEEC-----SSSEEEEEECTTSCEEEEEE----------T
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecC-----CCCCceEEEcCCCCEEEEEE----------C
Confidence 544443332 1 12788887765 223333443 11234466778888877763 2
Q ss_pred CCcEEEEEECCC
Q 043816 330 NKWELDWYDLQN 341 (378)
Q Consensus 330 ~~~~l~~yd~~t 341 (378)
.++.+.+|++++
T Consensus 421 ~d~~i~v~~~~~ 432 (433)
T 3bws_A 421 LDHQIRVYRRDG 432 (433)
T ss_dssp TTTEEEEEEETT
T ss_pred CCCeEEEEEecC
Confidence 478899998763
No 118
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=71.94 E-value=48 Score=28.59 Aligned_cols=184 Identities=10% Similarity=0.087 Sum_probs=89.5
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCC--CCEEEEEEEEecCCCCcccEEEEEEcCCCc--eEEeec
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVS--DDYKVVRLIQFGRGKVEYTEIAVYSLKSNS--SRRIRV 193 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~--~~ykVv~~~~~~~~~~~~~~~~vyss~t~~--W~~~~~ 193 (378)
+..+.|||..+++...+..... ......+.+.+.. +.+-+.+- ....+.+|+..++. -....
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~- 108 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEK-----AKPIKCGTFGATSLQQRYLATGD--------FGGNLHIWNLEAPEMPVYSVK- 108 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEE-----SSCEEEEECTTCCTTTCCEEEEE--------TTSCEEEECTTSCSSCSEEEC-
T ss_pred CcEEEEEeCCCCcccceeeecc-----cCcEEEEEEcCCCCCCceEEEec--------CCCeEEEEeCCCCCccEEEEE-
Confidence 5578899988887654432211 2344556666653 34333332 23467788877654 11111
Q ss_pred cCCcc---ccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCce--EeeecCCCCCCCCCCCeeEEE-----EeCC
Q 043816 194 DFPYY---FSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE--FFEVPLPHLENRDSGNLMYMG-----NFSG 262 (378)
Q Consensus 194 ~~p~~---~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~l~-----~~~G 262 (378)
..... ..+... +..-+|..-..+..+ ..|..+|+.+.. ...+..+..... .. ...+. ..+|
T Consensus 109 ~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~-~~-v~~~~~~~~~~~~~ 180 (357)
T 3i2n_A 109 GHKEIINAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENK-RD-CWTVAFGNAYNQEE 180 (357)
T ss_dssp CCSSCEEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCC-CC-EEEEEEECCCC-CC
T ss_pred ecccceEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCC-Cc-eEEEEEEeccCCCC
Confidence 00000 000000 111234433333222 238899987754 344443332211 11 22222 1467
Q ss_pred eEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEee---cCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 263 CLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSK---SGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~---~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
++.++...+. .+.+|.++. . ....... ......+.+.+ +++.++.. ..++.+..||
T Consensus 181 ~~l~~~~~d~--~i~i~d~~~~~--~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~-----------~~dg~i~i~d 240 (357)
T 3i2n_A 181 RVVCAGYDNG--DIKLFDLRNMA--LRWETNI-----KNGVCSLEFDRKDISMNKLVAT-----------SLEGKFHVFD 240 (357)
T ss_dssp CEEEEEETTS--EEEEEETTTTE--EEEEEEC-----SSCEEEEEESCSSSSCCEEEEE-----------ESTTEEEEEE
T ss_pred CEEEEEccCC--eEEEEECccCc--eeeecCC-----CCceEEEEcCCCCCCCCEEEEE-----------CCCCeEEEEe
Confidence 7777666655 999999877 2 1111222 11223355555 67777766 3677888888
Q ss_pred CCCCe
Q 043816 339 LQNQR 343 (378)
Q Consensus 339 ~~t~~ 343 (378)
+++++
T Consensus 241 ~~~~~ 245 (357)
T 3i2n_A 241 MRTQH 245 (357)
T ss_dssp EEEEE
T ss_pred CcCCC
Confidence 76544
No 119
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=71.74 E-value=44 Score=28.05 Aligned_cols=194 Identities=11% Similarity=0.048 Sum_probs=97.9
Q ss_pred cccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
..+|-+.+.. ....++++||. ++...++.+.. .....++.+|+.. ..-| .. . ....+..|+..
T Consensus 70 ~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~-----~~~~~~i~~~~~g-~l~v--~~-~-----~~~~i~~~~~~- 133 (300)
T 2qc5_A 70 SSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQP-----DSGPYGITEGLNG-DIWF--TQ-L-----NGDRIGKLTAD- 133 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-----TCCEEEEEECSTT-CEEE--EE-T-----TTTEEEEECTT-
T ss_pred CCCCCEEEEecCCCeEEEECCC-CCeEEecCCCC-----CCCCccceECCCC-CEEE--Ec-c-----CCCeEEEECCC-
Confidence 3556555554 35679999998 76665432211 1234556666543 2211 11 0 12356666666
Q ss_pred CceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CC
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SG 262 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G 262 (378)
+...... .+.... .-.++.+ +|.+|+..... ..|..+|. +.++..+..|..... -..+... +|
T Consensus 134 g~~~~~~--~~~~~~-~~~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~~----~~~i~~d~~g 199 (300)
T 2qc5_A 134 GTIYEYD--LPNKGS-YPAFITLGSDNALWFTENQN------NSIGRITN-TGKLEEYPLPTNAAA----PVGITSGNDG 199 (300)
T ss_dssp SCEEEEE--CSSTTC-CEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTTCC----EEEEEECTTS
T ss_pred CCEEEcc--CCCCCC-CceeEEECCCCCEEEEecCC------CeEEEECC-CCcEEEeeCCCCCCC----cceEEECCCC
Confidence 5554333 121111 1113333 57866544222 35999999 556666655543321 2334333 67
Q ss_pred eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 263 CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
.|++...... .+.++..+..... ..++. ......-+++.++|. |++.. .....+..||+ ++
T Consensus 200 ~l~v~~~~~~--~i~~~~~~g~~~~-~~~~~----~~~~~~~i~~d~~g~-l~v~~----------~~~~~i~~~~~-~g 260 (300)
T 2qc5_A 200 ALWFVEIMGN--KIGRITTTGEISE-YDIPT----PNARPHAITAGKNSE-IWFTE----------WGANQIGRITN-DN 260 (300)
T ss_dssp SEEEEETTTT--EEEEECTTCCEEE-EECSS----TTCCEEEEEECSTTC-EEEEE----------TTTTEEEEECT-TS
T ss_pred CEEEEccCCC--EEEEEcCCCcEEE-EECCC----CCCCceEEEECCCCC-EEEec----------cCCCeEEEECC-CC
Confidence 8887765433 5555554223222 11221 112223456666766 55552 24679999999 56
Q ss_pred eEEEEEEE
Q 043816 343 RAAGQVTV 350 (378)
Q Consensus 343 ~~~~~v~~ 350 (378)
++. .+.+
T Consensus 261 ~~~-~~~~ 267 (300)
T 2qc5_A 261 TIQ-EYQL 267 (300)
T ss_dssp CEE-EEEC
T ss_pred cEE-EEEC
Confidence 666 5544
No 120
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=71.44 E-value=51 Score=28.63 Aligned_cols=187 Identities=11% Similarity=0.079 Sum_probs=96.6
Q ss_pred cceEEe-ecCCceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 109 NGLIAL-KNGENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 109 ~Gll~~-~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
+|-+++ ...+..+.|||..+++... +...+ .....+.+.|.+. +-+.+ . ....+.+|+.+++
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~-------~~~~~~~~spdg~-~l~~g-~-------~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGP-------VDAWTLAFSPDSQ-YLATG-T-------HVGKVNIFGVESG 154 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-------TCCCCEEECTTSS-EEEEE-C-------TTSEEEEEETTTC
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC-------ccEEEEEECCCCC-EEEEE-c-------CCCcEEEEEcCCC
Confidence 343333 3356789999998887654 32221 1222355555433 22221 1 2456788888776
Q ss_pred ceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEE-eCC
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGN-FSG 262 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~-~~G 262 (378)
.-...- ..... .-.++.+ +|..-..+..+ ..|..+|+.+.+.. .+...... -..+.. .+|
T Consensus 155 ~~~~~~-~~~~~---~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~h~~~------v~~l~~spd~ 218 (321)
T 3ow8_A 155 KKEYSL-DTRGK---FILSIAYSPDGKYLASGAID------GIINIFDIATGKLLHTLEGHAMP------IRSLTFSPDS 218 (321)
T ss_dssp SEEEEE-ECSSS---CEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSC------CCEEEECTTS
T ss_pred ceeEEe-cCCCc---eEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEcccCCc------eeEEEEcCCC
Confidence 422111 00000 0001222 45443333322 23888999876543 33322111 122332 256
Q ss_pred eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 263 CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
++.+.+..+. .+.||.++. ......+.. ......-+++.++|..++.. ..++.+.+||++++
T Consensus 219 ~~l~s~s~dg--~i~iwd~~~-~~~~~~~~~----h~~~v~~~~~sp~~~~l~s~-----------s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 219 QLLVTASDDG--YIKIYDVQH-ANLAGTLSG----HASWVLNVAFCPDDTHFVSS-----------SSDKSVKVWDVGTR 280 (321)
T ss_dssp CEEEEECTTS--CEEEEETTT-CCEEEEECC----CSSCEEEEEECTTSSEEEEE-----------ETTSCEEEEETTTT
T ss_pred CEEEEEcCCC--eEEEEECCC-cceeEEEcC----CCCceEEEEECCCCCEEEEE-----------eCCCcEEEEeCCCC
Confidence 6666655555 899998876 112223332 01123346667788877777 47789999999998
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
+..
T Consensus 281 ~~~ 283 (321)
T 3ow8_A 281 TCV 283 (321)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=71.08 E-value=48 Score=28.21 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCeeEEEEEeCCCCCCCCEEEEEECCCc-----eEeeecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEc
Q 043816 209 RGHVHWLVLNEPEGYNGDLIVAFDLKSE-----EFFEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMK 282 (378)
Q Consensus 209 ~G~lYwl~~~~~~~~~~~~il~fD~~~~-----~~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~ 282 (378)
+|.+-..+..+.. |..+|+.++ ....+........ .+..... +|++.+.+..+. .+.+|.++
T Consensus 22 ~~~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~d~~~l~s~~~dg--~v~vwd~~ 89 (351)
T 3f3f_A 22 YGRHVATCSSDQH------IKVFKLDKDTSNWELSDSWRAHDSSIV----AIDWASPEYGRIIASASYDK--TVKLWEED 89 (351)
T ss_dssp SSSEEEEEETTSE------EEEEEECSSSCCEEEEEEEECCSSCEE----EEEECCGGGCSEEEEEETTS--CEEEEEEC
T ss_pred CCCEEEEeeCCCe------EEEEECCCCCCcceecceeccCCCcEE----EEEEcCCCCCCEEEEEcCCC--eEEEEecC
Q ss_pred C--------ceeeeEEEecCccccceeeEEEEEeec--CCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 283 E--------SWTKVFSFAGGVFGIFTYAKALAYSKS--GDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 283 ~--------~W~~~~~i~~~~~~~~~~~~~~~~~~~--g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
. .|.....+.. ......-+.+.++ +..++.. ..++.+..||+++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~-----------~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLND----SKGSLYSVKFAPAHLGLKLACL-----------GNDGILRLYDALEPS 145 (351)
T ss_dssp TTSCTTSSCSEEEEEEECC----CSSCEEEEEECCGGGCSEEEEE-----------ETTCEEEEEECSSTT
T ss_pred CCcccccccCcceeeeecc----cCCceeEEEEcCCCCCcEEEEe-----------cCCCcEEEecCCChH
No 122
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=70.98 E-value=51 Score=28.45 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=42.1
Q ss_pred eEEEEEecCCCCcEEEEEEcC----ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 263 CLYFSCFCDYPEPVDIWIMKE----SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~----~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
++.+.+..+. .+.||.++. .|.....-.. .....-+++.++|..|... ..++.+..|+
T Consensus 229 ~~las~s~D~--~v~iw~~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g~~las~-----------~~D~~v~lw~ 290 (316)
T 3bg1_A 229 STIASCSQDG--RVFIWTCDDASSNTWSPKLLHKF-----NDVVWHVSWSITANILAVS-----------GGDNKVTLWK 290 (316)
T ss_dssp CEEEEEETTC--EEEEEECSSTTCCCCBCCEEEEC-----SSCEEEEEECTTTCCEEEE-----------ESSSCEEEEE
T ss_pred ceEEEEcCCC--eEEEEEccCccccchhhhhhhcC-----CCcEEEEEEcCCCCEEEEE-----------cCCCeEEEEE
Confidence 4555555555 999999875 3433211111 1123346677888877777 4678888998
Q ss_pred CC-CCeEEEEEE
Q 043816 339 LQ-NQRAAGQVT 349 (378)
Q Consensus 339 ~~-t~~~~~~v~ 349 (378)
.. .++|+ .+.
T Consensus 291 ~~~~g~~~-~~~ 301 (316)
T 3bg1_A 291 ESVDGQWV-CIS 301 (316)
T ss_dssp ECTTSCEE-EEE
T ss_pred ECCCCcEE-Eee
Confidence 75 56777 665
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=70.89 E-value=40 Score=29.22 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=46.7
Q ss_pred CeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
|++.+++..+. .+.||.++. .......+... .....-+.+.++|+.|+.. ..++.+.+||++
T Consensus 54 g~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~-----------~~dg~v~iwd~~ 116 (368)
T 3mmy_A 54 GNFLIAGSWAN--DVRCWEVQDSGQTIPKAQQMH----TGPVLDVCWSDDGSKVFTA-----------SCDKTAKMWDLS 116 (368)
T ss_dssp SEEEEEEETTS--EEEEEEECTTSCEEEEEEEEC----SSCEEEEEECTTSSEEEEE-----------ETTSEEEEEETT
T ss_pred ceEEEEECCCC--cEEEEEcCCCCceeEEEeccc----cCCEEEEEECcCCCEEEEE-----------cCCCcEEEEEcC
Confidence 46666666665 899999986 44443333320 1123346667788888877 478899999999
Q ss_pred CCeEEEEE
Q 043816 341 NQRAAGQV 348 (378)
Q Consensus 341 t~~~~~~v 348 (378)
+++.. .+
T Consensus 117 ~~~~~-~~ 123 (368)
T 3mmy_A 117 SNQAI-QI 123 (368)
T ss_dssp TTEEE-EE
T ss_pred CCCce-ee
Confidence 99888 54
No 124
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=70.85 E-value=48 Score=28.12 Aligned_cols=196 Identities=7% Similarity=-0.036 Sum_probs=95.1
Q ss_pred cccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEE-Eec-------C-CCCccc
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLI-QFG-------R-GKVEYT 176 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~-~~~-------~-~~~~~~ 176 (378)
+.+|.+.+.. ....+.++||.|++...+........ ......+.+|+.+. +-|.-.. ... . ......
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKK--LNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEE--CCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCC--CCCCCCEEECCCCC-EEEECCccccccccccccccccCCCc
Confidence 4466655554 35689999999999877643221100 11223355566442 2221000 000 0 000122
Q ss_pred EEEEEEcCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECC-CceE-e--eecCCCCCCCC
Q 043816 177 EIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLK-SEEF-F--EVPLPHLENRD 250 (378)
Q Consensus 177 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~-~~~~-~--~i~~P~~~~~~ 250 (378)
.+..|+.. +.-+....... ...++.+ +|.++ .+.... ..|..||+. +.+. . .+- ......
T Consensus 154 ~l~~~~~~-g~~~~~~~~~~-----~~~gi~~s~dg~~l-v~~~~~-----~~i~~~~~~~~g~~~~~~~~~-~~~~~~- 219 (296)
T 3e5z_A 154 WVFRLAPD-GTLSAPIRDRV-----KPNGLAFLPSGNLL-VSDTGD-----NATHRYCLNARGETEYQGVHF-TVEPGK- 219 (296)
T ss_dssp EEEEECTT-SCEEEEECCCS-----SEEEEEECTTSCEE-EEETTT-----TEEEEEEECSSSCEEEEEEEE-CCSSSC-
T ss_pred EEEEECCC-CCEEEeecCCC-----CCccEEECCCCCEE-EEeCCC-----CeEEEEEECCCCcCcCCCeEe-eCCCCC-
Confidence 44455544 44333321110 1123444 57776 444322 358899986 4444 1 111 111110
Q ss_pred CCCeeEEE-EeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEE-eecCCEEEEeeccCCCccccc
Q 043816 251 SGNLMYMG-NFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAY-SKSGDKVLVDKFLYDEDEDEG 328 (378)
Q Consensus 251 ~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~-~~~g~~vl~~~~~~~~~~~~~ 328 (378)
--.+. ..+|+|++.. .. .+.+|..+.. ....+..+. . ..-+++ .++++.|++.
T Consensus 220 ---p~~i~~d~~G~l~v~~--~~--~v~~~~~~g~--~~~~~~~~~---~--~~~~~f~~~d~~~L~v~----------- 274 (296)
T 3e5z_A 220 ---TDGLRVDAGGLIWASA--GD--GVHVLTPDGD--ELGRVLTPQ---T--TSNLCFGGPEGRTLYMT----------- 274 (296)
T ss_dssp ---CCSEEEBTTSCEEEEE--TT--EEEEECTTSC--EEEEEECSS---C--CCEEEEESTTSCEEEEE-----------
T ss_pred ---CCeEEECCCCCEEEEc--CC--eEEEECCCCC--EEEEEECCC---C--ceeEEEECCCCCEEEEE-----------
Confidence 11133 3467887776 33 6777765542 233343311 1 112334 3577778887
Q ss_pred cCCcEEEEEECCCCeEE
Q 043816 329 INKWELDWYDLQNQRAA 345 (378)
Q Consensus 329 ~~~~~l~~yd~~t~~~~ 345 (378)
....++.+++++++++
T Consensus 275 -t~~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 275 -VSTEFWSIETNVRGLE 290 (296)
T ss_dssp -ETTEEEEEECSCCBCC
T ss_pred -cCCeEEEEEccccccc
Confidence 4569999999999988
No 125
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=70.55 E-value=62 Score=29.24 Aligned_cols=190 Identities=12% Similarity=0.099 Sum_probs=94.8
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
.+.|++.. ...+...++-+++...+-+. .....++.+|+..+. |+.... ....+..++..+...
T Consensus 87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-------~~~~~gl~~d~~~~~--ly~~D~------~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-------LENAIALDFHHRREL--VFWSDV------TLDRILRANLNGSNV 150 (386)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCCEEEECS-------CSCEEEEEEETTTTE--EEEEET------TTTEEEEEETTSCCE
T ss_pred cceeEeec-CccceeeccCCCcEEEEecC-------CCccEEEEEecCCCe--EEEEeC------CCCcEEEEecCCCCc
Confidence 45555554 34577777776665544321 234577888876553 332221 234667777776655
Q ss_pred EEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe--CCe
Q 043816 189 RRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF--SGC 263 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~--~G~ 263 (378)
+.+. ... .... .++.+ +|.|||..... ..|.++|+....-..+. ..... . -..+++. +|.
T Consensus 151 ~~~~-~~~--~~~p-~glavd~~~g~lY~~d~~~------~~I~~~~~dg~~~~~l~-~~~l~---~-P~giavdp~~g~ 215 (386)
T 3v65_B 151 EEVV-STG--LESP-GGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLL-WQSLE---K-PRAIALHPMEGT 215 (386)
T ss_dssp EEEE-CSS--CSCC-CCEEEETTTTEEEEEETTT------TEEEECBTTSCSCEEEE-CSSCS---C-EEEEEEETTTTE
T ss_pred EEEE-eCC--CCCc-cEEEEEeCCCeEEEEcCCC------CeEEEEeCCCCceEEee-cCCCC---C-CcEEEEEcCCCe
Confidence 4443 111 1111 23433 58999986433 35889998765433321 11111 1 2223333 577
Q ss_pred EEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 264 LYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
|+....... ..|....++..-. ..+-.. .+....-+++...++.|++.. .....|..+|++...
T Consensus 216 ly~td~~~~-~~I~r~~~dG~~~--~~~~~~---~~~~PnGlavd~~~~~lY~aD----------~~~~~I~~~d~dG~~ 279 (386)
T 3v65_B 216 IYWTDWGNT-PRIEASSMDGSGR--RIIADT---HLFWPNGLTIDYAGRRMYWVD----------AKHHVIERANLDGSH 279 (386)
T ss_dssp EEEEECSSS-CEEEEEETTSCSC--EEEECS---SCSCEEEEEEEGGGTEEEEEE----------TTTTEEEEECTTSCS
T ss_pred EEEeccCCC-CEEEEEeCCCCCc--EEEEEC---CCCCeeeEEEeCCCCEEEEEE----------CCCCEEEEEeCCCCe
Confidence 777654331 1343333333211 111110 111223355655566777774 345678888887655
Q ss_pred EE
Q 043816 344 AA 345 (378)
Q Consensus 344 ~~ 345 (378)
.+
T Consensus 280 ~~ 281 (386)
T 3v65_B 280 RK 281 (386)
T ss_dssp CE
T ss_pred eE
Confidence 44
No 126
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=70.52 E-value=30 Score=29.96 Aligned_cols=120 Identities=9% Similarity=0.021 Sum_probs=58.9
Q ss_pred CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCCeEEEEEecCC--CCcEEEEEEcCce
Q 043816 209 RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSGCLYFSCFCDY--PEPVDIWIMKESW 285 (378)
Q Consensus 209 ~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G~L~l~~~~~~--~~~i~iW~l~~~W 285 (378)
+|.+||..... ..|..+|+.+.++..+..+... . -..+.. .+|+|++...... ...+.+|..+...
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~----~-~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKA----N-PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEECSSS----S-EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCCCC----C-cceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 58888765432 2599999988877665321111 1 223443 3678877765431 1245555443321
Q ss_pred eeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 286 TKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 286 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
.. ..+... .......-+.+.++|.+++-... + ........|+.+|+++++++ .+
T Consensus 124 ~~-~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~----~-~~~~~~~~l~~~~~~~~~~~-~~ 177 (333)
T 2dg1_A 124 LQ-DIIEDL--STAYCIDDMVFDSKGGFYFTDFR----G-YSTNPLGGVYYVSPDFRTVT-PI 177 (333)
T ss_dssp CE-EEECSS--SSCCCEEEEEECTTSCEEEEECC----C-BTTBCCEEEEEECTTSCCEE-EE
T ss_pred EE-EEEccC--ccCCcccceEECCCCCEEEEecc----c-cccCCCceEEEEeCCCCEEE-Ee
Confidence 11 112110 00112233556667764433310 0 00001367889998887776 54
No 127
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=70.19 E-value=46 Score=27.59 Aligned_cols=188 Identities=12% Similarity=0.082 Sum_probs=94.9
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC-CceEEeeccCC
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS-NSSRRIRVDFP 196 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t-~~W~~~~~~~p 196 (378)
...++++|+.+++...+.... .....+.+.|.++ +-++. . ...+.+++..+ +....+. ..+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~-------~~v~~~~~spdg~-~l~~~-~--------~~~i~~~d~~~~~~~~~~~-~~~ 82 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP-------ELFEAPNWSPDGK-YLLLN-S--------EGLLYRLSLAGDPSPEKVD-TGF 82 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES-------SCCEEEEECTTSS-EEEEE-E--------TTEEEEEESSSCCSCEECC-CTT
T ss_pred ceeEEEEeCCCCceeeeccCC-------cceEeeEECCCCC-EEEEE-c--------CCeEEEEeCCCCCCceEec-ccc
Confidence 457999999999887765432 2334566666543 33332 1 23788999888 7665544 111
Q ss_pred ccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCe-EEEEEecCCCC
Q 043816 197 YYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGC-LYFSCFCDYPE 274 (378)
Q Consensus 197 ~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~-L~l~~~~~~~~ 274 (378)
...........-+|.....+.... .....|..+|..+.....+..... ...+... +|+ |++....+.
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~spdg~~l~~~~~~~~-- 151 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVE--FGKSAIYLLPSTGGTPRLMTKNLP-------SYWHGWSPDGKSFTYCGIRDQ-- 151 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTT--TSSCEEEEEETTCCCCEECCSSSS-------EEEEEECTTSSEEEEEEEETT--
T ss_pred ccccccceEECCCCCEEEEEEeCC--CCcceEEEEECCCCceEEeecCCC-------ccceEECCCCCEEEEEECCCC--
Confidence 100111112223565433333211 123468888887766544432211 2222222 555 443444444
Q ss_pred cEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 275 PVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 275 ~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
.+.||.++. .-. ...+... ......+.+.++|+.+++.... .....++.+++.++..+ .+
T Consensus 152 ~~~l~~~~~~~~~-~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~--------~~~~~i~~~~~~~~~~~-~~ 212 (297)
T 2ojh_A 152 VFDIYSMDIDSGV-ETRLTHG----EGRNDGPDYSPDGRWIYFNSSR--------TGQMQIWRVRVDGSSVE-RI 212 (297)
T ss_dssp EEEEEEEETTTCC-EEECCCS----SSCEEEEEECTTSSEEEEEECT--------TSSCEEEEEETTSSCEE-EC
T ss_pred ceEEEEEECCCCc-ceEcccC----CCccccceECCCCCEEEEEecC--------CCCccEEEECCCCCCcE-EE
Confidence 789998754 111 1112110 1112335556777766665210 13456777777777766 54
No 128
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=69.23 E-value=68 Score=29.18 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=89.7
Q ss_pred ceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCC
Q 043816 146 DLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEG 222 (378)
Q Consensus 146 ~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~ 222 (378)
....++.+|..++. |..... ....+++++.....-+.+. . .....+ .++.+ +|.|||.-....
T Consensus 159 ~~p~glavD~~~~~--lY~~d~------~~~~I~~~~~~g~~~~~l~-~--~~~~~P-~~iavdp~~g~ly~td~~~~-- 224 (400)
T 3p5b_L 159 QAPDGLAVDWIHSN--IYWTDS------VLGTVSVADTKGVKRKTLF-R--ENGSKP-RAIVVDPVHGFMYWTDWGTP-- 224 (400)
T ss_dssp SCEEEEEEETTTTE--EEEEET------TTTEEEEECTTTCSEEEEE-E--CSSCCE-EEEEEETTTTEEEEEECSSS--
T ss_pred CCcccEEEEecCCc--eEEEEC------CCCeEEEEeCCCCceEEEE-e--CCCCCc-ceEEEecccCeEEEEeCCCC--
Confidence 34567778875553 332221 2346777877765544443 1 001111 14444 589999864321
Q ss_pred CCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe--CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccce
Q 043816 223 YNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF--SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFT 300 (378)
Q Consensus 223 ~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~ 300 (378)
..|..+|+....-..+-. .... . ---|+.. +++||++..... .|....++..-..+. +... ..
T Consensus 225 ---~~I~~~~~dG~~~~~~~~-~~l~---~-P~glavd~~~~~lY~aD~~~~--~I~~~d~dG~~~~~~-~~~~----~~ 289 (400)
T 3p5b_L 225 ---AKIKKGGLNGVDIYSLVT-ENIQ---W-PNGITLDLLSGRLYWVDSKLH--SISSIDVNGGNRKTI-LEDE----KR 289 (400)
T ss_dssp ---CCEEEEETTSCSCEEEEC-SSCS---C-EEEEEEETTTTEEEEEETTTT--EEEEEETTSCCCEEE-EECS----ST
T ss_pred ---CEEEEEeCCCCccEEEEE-CCCC---c-eEEEEEEeCCCEEEEEECCCC--EEEEEeCCCCccEEE-EeCC----CC
Confidence 249999997654333311 1111 1 2224433 678988866544 555555544111111 1110 01
Q ss_pred eeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEeccCCCceeEEEEEecc
Q 043816 301 YAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSL 367 (378)
Q Consensus 301 ~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~sl 367 (378)
...|.++.-.++.|++.. .....|..+|..+++....|. .+...- +.+..|.+..
T Consensus 290 l~~P~gl~v~~~~lywtd----------~~~~~V~~~~~~~G~~~~~i~-~~~~~p-~~i~v~~~~~ 344 (400)
T 3p5b_L 290 LAHPFSLAVFEDKVFWTD----------IINEAIFSANRLTGSDVNLLA-ENLLSP-EDMVLFHNLT 344 (400)
T ss_dssp TSSEEEEEEETTEEEEEE----------SSSCSEEEEESSSCCCCEEEE-CSCSCE-EEEEEESGGG
T ss_pred CCCCEEEEEeCCEEEEec----------CCCCeEEEEEcCCCCceEEEe-cCCCCC-ceEEEEeecc
Confidence 224555555667788774 356789999966664441432 222211 4555555543
No 129
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=68.66 E-value=90 Score=30.40 Aligned_cols=157 Identities=6% Similarity=0.018 Sum_probs=75.4
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCCceE--ECCe-eEEEEEeCCCCCCCCEEEEEECCCc-eEeeecCCCCCCC-
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTF--ARGH-VHWLVLNEPEGYNGDLIVAFDLKSE-EFFEVPLPHLENR- 249 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~--~~G~-lYwl~~~~~~~~~~~~il~fD~~~~-~~~~i~~P~~~~~- 249 (378)
...+.+++..++.-+.+. ..... ...-..+. -+|. ++....... .....|..+|+.+. ....+........
T Consensus 234 ~~~l~~~d~~~~~~~~~~-~~~~~-~~~~~~~~~spdg~~l~~~~~~~~--~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQ-TGEPK-EKFLTNLSWSPDENILYVAEVNRA--QNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECC-CCSCT-TCEEEEEEECTTSSEEEEEEECTT--SCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred eeEEEEEECCCCceEeec-cCCCC-ceeEeeEEEECCCCEEEEEEeCCC--CCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 467888888887654443 11000 00001222 2565 444333221 12235889999887 6655421111100
Q ss_pred CCCCeeEEEEe--CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcccc
Q 043816 250 DSGNLMYMGNF--SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDE 327 (378)
Q Consensus 250 ~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~ 327 (378)
.....+. ... +|++.++...+. .+.||.++..-.....+... .......+++.++|+.|++.... +
T Consensus 310 ~~~~~~~-~sp~~dg~~l~~~~~~g--~~~l~~~~~~~~~~~~l~~~---~~~v~~~~~~spdg~~l~~~~~~---~--- 377 (706)
T 2z3z_A 310 EPLHPLT-FLPGSNNQFIWQSRRDG--WNHLYLYDTTGRLIRQVTKG---EWEVTNFAGFDPKGTRLYFESTE---A--- 377 (706)
T ss_dssp CCCSCCE-ECTTCSSEEEEEECTTS--SCEEEEEETTSCEEEECCCS---SSCEEEEEEECTTSSEEEEEESS---S---
T ss_pred CccCCce-eecCCCCEEEEEEccCC--ccEEEEEECCCCEEEecCCC---CeEEEeeeEEcCCCCEEEEEecC---C---
Confidence 0000111 222 677555444433 78899886311222233221 12223346777888877776310 0
Q ss_pred ccCCcEEEEEECCCCeEEEEE
Q 043816 328 GINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 328 ~~~~~~l~~yd~~t~~~~~~v 348 (378)
+.....++.+|+++++.+ .+
T Consensus 378 ~~~~~~l~~~d~~~~~~~-~l 397 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGKTK-DL 397 (706)
T ss_dssp CTTCBEEEEEETTCCCCE-ES
T ss_pred CCceEEEEEEEcCCCCce-ec
Confidence 001248899999888766 54
No 130
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=68.44 E-value=65 Score=28.72 Aligned_cols=195 Identities=12% Similarity=0.142 Sum_probs=98.7
Q ss_pred eEEeecCCceEEEEcCCCcceee-cC-CCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 111 LIALKNGENDIALWNPSTKKHVL-LP-KFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~-LP-~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
+|+....+..+.|||..+++... +. ... ......+.+.+.+. +-+. .. ....+.+|+.+++.-
T Consensus 146 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~-~l~~-~~-------~d~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVH------PDTIYSVDWSRDGA-LICT-SC-------RDKRVRVIEPRKGTV 210 (402)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECTTTC------CSCEEEEEECTTSS-CEEE-EE-------TTSEEEEEETTTTEE
T ss_pred EEEEEcCCCEEEEEECCCCCccEEEecCCC------CCceEEEEECCCCC-EEEE-Ee-------cCCcEEEEeCCCCce
Confidence 44444456789999999887654 32 111 23456667776433 2222 21 245788999887653
Q ss_pred EEeeccCCccccCCCCceE--ECCeeEEEEEeCCCCCCCCEEEEEECCCce--EeeecCCCCCCCCCCCeeEEE-EeCCe
Q 043816 189 RRIRVDFPYYFSHPRDGTF--ARGHVHWLVLNEPEGYNGDLIVAFDLKSEE--FFEVPLPHLENRDSGNLMYMG-NFSGC 263 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~--~~G~lYwl~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~l~-~~~G~ 263 (378)
...- ....... ....+. -+|.+...+... .....|..+|+.+.. ......+.... -..+. ..+|+
T Consensus 211 ~~~~-~~~~~~~-~~~~~~~~~~~~~l~~g~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~ 280 (402)
T 2aq5_A 211 VAEK-DRPHEGT-RPVHAVFVSEGKILTTGFSR---MSERQVALWDTKHLEEPLSLQELDTSSG-----VLLPFFDPDTN 280 (402)
T ss_dssp EEEE-ECSSCSS-SCCEEEECSTTEEEEEEECT---TCCEEEEEEETTBCSSCSEEEECCCCSS-----CEEEEEETTTT
T ss_pred eeee-ccCCCCC-cceEEEEcCCCcEEEEeccC---CCCceEEEEcCccccCCceEEeccCCCc-----eeEEEEcCCCC
Confidence 2211 0010000 011222 245544443211 112458899987643 22222222211 22333 33565
Q ss_pred EEEEEe-cCCCCcEEEEEEcC-c--eeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 264 LYFSCF-CDYPEPVDIWIMKE-S--WTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 264 L~l~~~-~~~~~~i~iW~l~~-~--W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
..++.. .+. .+.+|.++. . -........ .....-+++.++|..+ +. .+..+..|++
T Consensus 281 ~l~~~g~~dg--~i~i~d~~~~~~~~~~l~~~~~-----~~~v~~~~~sp~~~~~-~s------------~~~~~~~~~l 340 (402)
T 2aq5_A 281 IVYLCGKGDS--SIRYFEITSEAPFLHYLSMFSS-----KESQRGMGYMPKRGLE-VN------------KCEIARFYKL 340 (402)
T ss_dssp EEEEEETTCS--CEEEEEECSSTTCEEEEEEECC-----SSCCSEEEECCGGGSC-GG------------GTEEEEEEEE
T ss_pred EEEEEEcCCC--eEEEEEecCCCcceEeeccccc-----CCcccceEEecccccc-ee------------cceeEEEEEc
Confidence 555444 344 999999987 2 222222221 1112235566666532 22 4558899999
Q ss_pred CCCeEEEEEEEe
Q 043816 340 QNQRAAGQVTVH 351 (378)
Q Consensus 340 ~t~~~~~~v~~~ 351 (378)
.+++.+ .+.+.
T Consensus 341 ~~~~~~-~i~~~ 351 (402)
T 2aq5_A 341 HERKCE-PIAMT 351 (402)
T ss_dssp ETTEEE-EEEEE
T ss_pred CCCcEE-EEEEE
Confidence 999999 77654
No 131
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=68.43 E-value=60 Score=28.28 Aligned_cols=187 Identities=10% Similarity=0.030 Sum_probs=88.4
Q ss_pred EEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC---Cce
Q 043816 112 IALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS---NSS 188 (378)
Q Consensus 112 l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t---~~W 188 (378)
|+++. .+.+.+.++.+++...+-+. .....++.+|+.++. |..... ....+..++..+ ++.
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~-------~~~p~g~~~d~~~~~--ly~~D~------~~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPN-------LRNVVALDTEVASNR--IYWSDL------SQRMICSTQLDRAHGVSS 67 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECS-------CSSEEEEEEETTTTE--EEEEET------TTTEEEEEEC--------
T ss_pred EEEEC-CCeEEEEECCCcceEehhcC-------CCceEEEEEEeCCCE--EEEEEC------CCCcEEEEECCCCCCCcc
Confidence 44443 34577777777765544221 234567788876553 333221 234566666654 121
Q ss_pred -EEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE--eCC
Q 043816 189 -RRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN--FSG 262 (378)
Q Consensus 189 -~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~--~~G 262 (378)
+.+- +...... .++.+ +|.+||..... ..|.++|+....-..+- ..... . -..+++ .+|
T Consensus 68 ~~~~~---~~~~~~p-~glavd~~~~~ly~~d~~~------~~I~~~~~~g~~~~~~~-~~~~~---~-P~~iavdp~~g 132 (316)
T 1ijq_A 68 YDTVI---SRDIQAP-DGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLF-RENGS---K-PRAIVVDPVHG 132 (316)
T ss_dssp CEEEE---CSSCSCC-CEEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEE-ECTTC---C-EEEEEEETTTT
T ss_pred cEEEE---eCCCCCc-CEEEEeecCCeEEEEECCC------CEEEEEeCCCCceEEEE-ECCCC---C-cceEEeCCCCC
Confidence 1111 1111111 24443 68999985432 35999999875443331 11111 1 223333 357
Q ss_pred eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 263 CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
.|+....... ..|....++.+-.+ .+... .+....-+++..+++.|++.. ....++..+|+++.
T Consensus 133 ~ly~~d~~~~-~~I~~~~~dG~~~~--~~~~~---~~~~P~gla~d~~~~~lY~~D----------~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 133 FMYWTDWGTP-AKIKKGGLNGVDIY--SLVTE---NIQWPNGITLDLLSGRLYWVD----------SKLHSISSIDVNGG 196 (316)
T ss_dssp EEEEEECSSS-CEEEEEETTSCCEE--EEECS---SCSCEEEEEEETTTTEEEEEE----------TTTTEEEEEETTSC
T ss_pred EEEEEccCCC-CeEEEEcCCCCCeE--EEEEC---CCCCceEEEEeccCCEEEEEE----------CCCCeEEEEecCCC
Confidence 7777654321 14433333332111 11110 112223355555566777773 34567888887765
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
..+
T Consensus 197 ~~~ 199 (316)
T 1ijq_A 197 NRK 199 (316)
T ss_dssp SCE
T ss_pred ceE
Confidence 555
No 132
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.42 E-value=47 Score=29.01 Aligned_cols=67 Identities=13% Similarity=-0.044 Sum_probs=40.5
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
+|++.+.+..+. .+.+|.++. .-........ .....-++++++|..+... ..++.+..||+
T Consensus 138 ~~~~l~s~s~dg--~i~~wd~~~~~~~~~~~~~~-----~~~i~~~~~~pdg~~lasg-----------~~dg~i~iwd~ 199 (343)
T 3lrv_A 138 NTEYFIWADNRG--TIGFQSYEDDSQYIVHSAKS-----DVEYSSGVLHKDSLLLALY-----------SPDGILDVYNL 199 (343)
T ss_dssp -CCEEEEEETTC--CEEEEESSSSCEEEEECCCS-----SCCCCEEEECTTSCEEEEE-----------CTTSCEEEEES
T ss_pred CCCEEEEEeCCC--cEEEEECCCCcEEEEEecCC-----CCceEEEEECCCCCEEEEE-----------cCCCEEEEEEC
Confidence 456666666555 899999977 2211111111 1112336667788877776 46788999999
Q ss_pred CCCeEE
Q 043816 340 QNQRAA 345 (378)
Q Consensus 340 ~t~~~~ 345 (378)
++++..
T Consensus 200 ~~~~~~ 205 (343)
T 3lrv_A 200 SSPDQA 205 (343)
T ss_dssp SCTTSC
T ss_pred CCCCCC
Confidence 887643
No 133
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=67.32 E-value=61 Score=27.97 Aligned_cols=64 Identities=9% Similarity=0.178 Sum_probs=38.4
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
+|+....+..+.|||..+++....-... ......+.+.+..+.+-+.+- ....+.+|+..++.-
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIKHYVGH------GNAINELKFHPRDPNLLLSVS--------KDHALRLWNIQTDTL 150 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEEEEESC------CSCEEEEEECSSCTTEEEEEE--------TTSCEEEEETTTTEE
T ss_pred EEEEecCCCEEEEEEchhceEeeeecCC------CCcEEEEEECCCCCCEEEEEe--------CCCeEEEEEeecCeE
Confidence 4444445678999999988765432211 345566777774444433322 245688898887653
No 134
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=67.25 E-value=55 Score=27.45 Aligned_cols=190 Identities=10% Similarity=0.110 Sum_probs=95.9
Q ss_pred cccceEEeecC--CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 107 TCNGLIALKNG--ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
..+|.+.+... ...+.++|+-.+....+.... .....++.+++... ++.... ....+.+|+..
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~------~~~~~~i~~~~~g~---l~v~~~------~~~~i~~~~~~ 150 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI------LQHPRGVTVDNKGR---IIVVEC------KVMRVIIFDQN 150 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT------CSCEEEEEECTTSC---EEEEET------TTTEEEEECTT
T ss_pred cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc------CCCceEEEEeCCCC---EEEEEC------CCCEEEEEcCC
Confidence 45676666653 568999996554444453322 22345666776542 222210 23467777765
Q ss_pred CCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eC
Q 043816 185 SNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FS 261 (378)
Q Consensus 185 t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~ 261 (378)
...-+... . +.... .-.++.+ +|.+|...... ..|..||...+....+..+.... . -..++. .+
T Consensus 151 g~~~~~~~-~-~~~~~-~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~~---~-p~~i~~d~~ 217 (286)
T 1q7f_A 151 GNVLHKFG-C-SKHLE-FPNGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEGITN---Y-PIGVGINSN 217 (286)
T ss_dssp SCEEEEEE-C-TTTCS-SEEEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTTTSC---S-EEEEEECTT
T ss_pred CCEEEEeC-C-CCccC-CcEEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEccCCccC---C-CcEEEECCC
Confidence 44333332 1 10000 1114444 47876544322 25999999877666554332111 1 223433 36
Q ss_pred CeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
|.|+++..... ..|.+|..+.. .+..+.... ......-+++.++|. +++.. .+..+.+|+...
T Consensus 218 G~l~v~~~~~~-~~i~~~~~~g~--~~~~~~~~~--~~~~~~~i~~~~~g~-l~vs~-----------~~~~v~v~~~~~ 280 (286)
T 1q7f_A 218 GEILIADNHNN-FNLTIFTQDGQ--LISALESKV--KHAQCFDVALMDDGS-VVLAS-----------KDYRLYIYRYVQ 280 (286)
T ss_dssp CCEEEEECSSS-CEEEEECTTSC--EEEEEEESS--CCSCEEEEEEETTTE-EEEEE-----------TTTEEEEEECSC
T ss_pred CCEEEEeCCCC-EEEEEECCCCC--EEEEEcccC--CCCcceeEEECCCCc-EEEEC-----------CCCeEEEEEccc
Confidence 78877765431 17888865432 222233210 011123466666765 55552 467888887654
No 135
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=66.78 E-value=25 Score=30.40 Aligned_cols=121 Identities=8% Similarity=-0.078 Sum_probs=58.7
Q ss_pred CCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEE-eCCe-EEEEEecCCCCcEEEEEEcCce
Q 043816 209 RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGN-FSGC-LYFSCFCDYPEPVDIWIMKESW 285 (378)
Q Consensus 209 ~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~-~~G~-L~l~~~~~~~~~i~iW~l~~~W 285 (378)
+|.+|...... ..|..+|+.+.+.. .++.+.... -..+.. .+|+ +++...... .+.+|.++. -
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~~~v~~~~~~--~i~~~d~~t-~ 75 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFG-----PGTAMMAPDNRTAYVLNNHYG--DIYGIDLDT-C 75 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCS-----SCEEEECTTSSEEEEEETTTT--EEEEEETTT-T
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCC-----CceeEECCCCCEEEEEeCCCC--cEEEEeCCC-C
Confidence 45555544332 35999999887653 456654211 122322 3565 444443333 788888765 1
Q ss_pred eeeEEEecCcccc--ceeeEEEEEeecCCEEEEeecc-CCCccccccCCcEEEEEECCCCe
Q 043816 286 TKVFSFAGGVFGI--FTYAKALAYSKSGDKVLVDKFL-YDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 286 ~~~~~i~~~~~~~--~~~~~~~~~~~~g~~vl~~~~~-~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
..+..+....... ......+.+.++|+.++..... ......++.....+..||+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 1223333311000 0111235667788888777300 00000000013789999998844
No 136
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=66.42 E-value=76 Score=28.75 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=45.3
Q ss_pred EEEEEECCCce----EeeecCCCCCCCCCCCeeEEEEe-CCe-EEEEEecCCCCcEEEEEEcCceeeeEEEecCccccce
Q 043816 227 LIVAFDLKSEE----FFEVPLPHLENRDSGNLMYMGNF-SGC-LYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFT 300 (378)
Q Consensus 227 ~il~fD~~~~~----~~~i~~P~~~~~~~~~~~~l~~~-~G~-L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~ 300 (378)
.|..+|+.+.. ...+..... . -..+... +|. +.+++..+. .+.+|.+...-..+..+... ..
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~-----~-v~~i~~~p~~~~~l~tg~~dg--~v~vwd~~~~~~~~~~~~~h----~~ 322 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTA-----E-VNCLSFNPYSEFILATGSADK--TVALWDLRNLKLKLHSFESH----KD 322 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSS-----C-EEEEEECSSCTTEEEEEETTS--EEEEEETTCTTSCSEEEECC----SS
T ss_pred eEEEEECCCCCCCcceeEeecCCC-----C-eEEEEeCCCCCCEEEEEeCCC--eEEEEeCCCCCCCeEEeecC----CC
Confidence 58899998652 122221111 1 2223222 354 555555555 89999987611223333320 11
Q ss_pred eeEEEEEeecCCE-EEEeeccCCCccccccCCcEEEEEECCC
Q 043816 301 YAKALAYSKSGDK-VLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 301 ~~~~~~~~~~g~~-vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
...-+.+.++|+. ++.. ..++.+.+||+.+
T Consensus 323 ~v~~i~~sp~~~~~l~s~-----------~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASS-----------GTDRRLHVWDLSK 353 (430)
T ss_dssp CEEEEEECSSCTTEEEEE-----------ETTSCCEEEEGGG
T ss_pred CEEEEEECCCCCCEEEEE-----------eCCCcEEEEeCCC
Confidence 2223455556643 3333 3566777777766
No 137
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=66.37 E-value=76 Score=28.74 Aligned_cols=117 Identities=13% Similarity=0.121 Sum_probs=61.3
Q ss_pred ceEECCeeEEEEEeCCCCCCCCEEEEEECCCce-EeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC
Q 043816 205 GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE-FFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE 283 (378)
Q Consensus 205 ~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~ 283 (378)
++..+|.....+..+ ..|..+|+.+.+ ...+..+.... . .+.-...++.+.+++..+. .+.+|.++.
T Consensus 324 ~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~---~-~v~~~~~~~~~l~s~~~dg--~v~iwd~~~ 391 (445)
T 2ovr_B 324 GMELKDNILVSGNAD------STVKIWDIKTGQCLQTLQGPNKHQ---S-AVTCLQFNKNFVITSSDDG--TVKLWDLKT 391 (445)
T ss_dssp EEEEETTEEEEEETT------SCEEEEETTTCCEEEEECSTTSCS---S-CEEEEEECSSEEEEEETTS--EEEEEETTT
T ss_pred EEEEeCCEEEEEeCC------CeEEEEECCCCcEEEEEccCCCCC---C-CEEEEEECCCEEEEEeCCC--eEEEEECCC
Confidence 455566644444332 249999997654 34455443222 1 3443444677766666665 999999876
Q ss_pred -ceeeeEEEec-CccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 284 -SWTKVFSFAG-GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 284 -~W~~~~~i~~-~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
.. +..+.. ...+......-+++.++|..+.... . .+.....+.+||.+.+
T Consensus 392 ~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~----~---dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 392 GEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGS----R---NGTEETKLLVLDFDVD 443 (445)
T ss_dssp CCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEEC----S---SSSSCCEEEEEECCCC
T ss_pred Cce--eeeeeccccCCCCceEEEEEecCCEEEEEEcc----c---CCCCccEEEEEECCCC
Confidence 32 233321 1001112333456666666555552 0 0112346999988764
No 138
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=66.20 E-value=70 Score=28.25 Aligned_cols=110 Identities=10% Similarity=-0.001 Sum_probs=57.9
Q ss_pred ccceEEeecCCceEEEEcCCCcceeecCCCCCCCC---C-CCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEc
Q 043816 108 CNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFD---D-YADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSL 183 (378)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~---~-~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 183 (378)
.+|.|.+......++.+|+.|++.+.--..+.... . ..........+ +. +|+... ....+..++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~v~v~~-------~~g~l~a~d~ 120 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS---GG-HVYIGS-------EKAQVYALNT 120 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE---TT-EEEEEE-------TTSEEEEEET
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe---CC-EEEEEc-------CCCEEEEEEC
Confidence 46777666656678889999988664221111000 0 01122222222 12 233222 2346788888
Q ss_pred CCC--ceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCc--eEee
Q 043816 184 KSN--SSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSE--EFFE 240 (378)
Q Consensus 184 ~t~--~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~--~~~~ 240 (378)
.++ .|+... +.. .....+..+|.+|..... ..|.+||..+. .|+.
T Consensus 121 ~tG~~~W~~~~---~~~--~~~~p~~~~~~v~v~~~~-------g~l~~~d~~tG~~~W~~ 169 (376)
T 3q7m_A 121 SDGTVAWQTKV---AGE--ALSRPVVSDGLVLIHTSN-------GQLQALNEADGAVKWTV 169 (376)
T ss_dssp TTCCEEEEEEC---SSC--CCSCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeC---CCc--eEcCCEEECCEEEEEcCC-------CeEEEEECCCCcEEEEE
Confidence 876 476643 211 122356778887764432 35999998654 4654
No 139
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=65.97 E-value=65 Score=27.79 Aligned_cols=65 Identities=6% Similarity=-0.015 Sum_probs=40.3
Q ss_pred CeEEEEEecCCCCcEEEEEEcC-c--eeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKE-S--WTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~-~--W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
|++.+++..+. .+.+|.++. . ......+.... ......-+++.++|..|+.. ..++.+.+||
T Consensus 299 ~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~-----------~~dg~i~iwd 363 (366)
T 3k26_A 299 QKMLALGNQVG--KLYVWDLEVEDPHKAKCTTLTHHK--CGAAIRQTSFSRDSSILIAV-----------CDDASIWRWD 363 (366)
T ss_dssp SSEEEEECTTS--CEEEEECCSSSGGGCEEEEECCTT--CCSCEEEEEECTTSSEEEEE-----------ETTSEEEEEE
T ss_pred CcEEEEEecCC--cEEEEECCCCCCccccceEEcccc--cCCceEEEEeCCCCCeEEEE-----------eCCCEEEEEE
Confidence 66666665555 899999987 2 22334444310 01233446677788888877 4788999999
Q ss_pred CCC
Q 043816 339 LQN 341 (378)
Q Consensus 339 ~~t 341 (378)
+.+
T Consensus 364 ~~~ 366 (366)
T 3k26_A 364 RLR 366 (366)
T ss_dssp C--
T ss_pred ecC
Confidence 864
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=64.81 E-value=97 Score=29.37 Aligned_cols=194 Identities=13% Similarity=0.012 Sum_probs=96.9
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
+++++.....+...++|..|++.+.|...+. ..+.++|++ ++-+..... .. ....+.+++..++.+
T Consensus 122 ~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---------~~~~~spDG-~~la~~~~~-~~---~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 122 EAVVFTGATEDRVALYALDGGGLRELARLPG---------FGFVSDIRG-DLIAGLGFF-GG---GRVSLFTSNLSSGGL 187 (582)
T ss_dssp SCEEEEEECSSCEEEEEEETTEEEEEEEESS---------CEEEEEEET-TEEEEEEEE-ET---TEEEEEEEETTTCCC
T ss_pred CeEEEEecCCCCceEEEccCCcEEEeecCCC---------ceEEECCCC-CEEEEEEEc-CC---CCeEEEEEcCCCCCc
Confidence 3466666555566799999998887754331 344556654 333322221 11 124588888888888
Q ss_pred EEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCC-CCCee-EE-EEeCCeEE
Q 043816 189 RRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRD-SGNLM-YM-GNFSGCLY 265 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~-~~~~~-~l-~~~~G~L~ 265 (378)
+.+. .-.... ......-||...+..... ....|..+|+.+.+...+......... ..... .. ..-+|+++
T Consensus 188 ~~l~-~~~~~~--~~~~~SpDG~~l~~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 188 RVFD-SGEGSF--SSASISPGMKVTAGLETA----REARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp EEEC-CSSCEE--EEEEECTTSCEEEEEECS----SCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred eEee-cCCCcc--ccceECCCCCEEEEccCC----CeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEE
Confidence 8765 222111 001122257544432221 123699999988776632221110000 00000 01 23367776
Q ss_pred EEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 266 FSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 266 l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+....+. .+.||.+ ..... .+ ......+.+. +|..++..... .....++.+|.++ +.+
T Consensus 261 ~~~~~~g--~~~l~~~-g~~~~----~~-----~~~v~~~~~s-dg~~l~~~s~~--------~~p~~l~~~d~~~-~~~ 318 (582)
T 3o4h_A 261 VVARREG--RSAVFID-GERVE----AP-----QGNHGRVVLW-RGKLVTSHTSL--------STPPRIVSLPSGE-PLL 318 (582)
T ss_dssp EEEEETT--EEEEEET-TEEEC----CC-----SSEEEEEEEE-TTEEEEEEEET--------TEEEEEEEETTCC-EEE
T ss_pred EEEEcCC--cEEEEEE-CCeec----cC-----CCceEEEEec-CCEEEEEEcCC--------CCCCeEEEEcCCC-ceE
Confidence 6666665 8999988 41111 11 0122234555 66655554210 1235688888775 443
No 141
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=64.44 E-value=68 Score=27.49 Aligned_cols=193 Identities=11% Similarity=0.002 Sum_probs=105.3
Q ss_pred cceEEeecC---CceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 109 NGLIALKNG---ENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 109 ~Gll~~~~~---~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
+|.|..+.+ .+.+.+.++.|++... +|..+ .....++..+ .+ ++..... ....+.+|+..
T Consensus 31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------~~fgeGi~~~--g~--~lyv~t~------~~~~v~viD~~ 94 (266)
T 2iwa_A 31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------SYFGEGLTLL--NE--KLYQVVW------LKNIGFIYDRR 94 (266)
T ss_dssp TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT------TCCEEEEEEE--TT--EEEEEET------TCSEEEEEETT
T ss_pred CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC------CcceEEEEEe--CC--EEEEEEe------cCCEEEEEECC
Confidence 377766653 5789999999999775 33221 2233344444 33 3333321 35678889988
Q ss_pred CCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCce-EeeecCCCCCCCCCCCeeEEEEeCCe
Q 043816 185 SNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE-FFEVPLPHLENRDSGNLMYMGNFSGC 263 (378)
Q Consensus 185 t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~l~~~~G~ 263 (378)
+.+ .+. .++.. ....-++..+|.--|.+. +. ..|..+|+++.+ -..|+.......-.. --.+...+|+
T Consensus 95 t~~--v~~-~i~~g-~~~g~glt~Dg~~l~vs~-gs-----~~l~viD~~t~~v~~~I~Vg~~~~p~~~-~nele~~dg~ 163 (266)
T 2iwa_A 95 TLS--NIK-NFTHQ-MKDGWGLATDGKILYGSD-GT-----SILYEIDPHTFKLIKKHNVKYNGHRVIR-LNELEYINGE 163 (266)
T ss_dssp TTE--EEE-EEECC-SSSCCEEEECSSSEEEEC-SS-----SEEEEECTTTCCEEEEEECEETTEECCC-EEEEEEETTE
T ss_pred CCc--EEE-EEECC-CCCeEEEEECCCEEEEEC-CC-----CeEEEEECCCCcEEEEEEECCCCccccc-ceeEEEECCE
Confidence 753 333 23322 111236777876555554 22 369999998744 444543221100000 1223333788
Q ss_pred EEEEEecCCCCcEEEEEEcC-ceeeeEEEecC-ccc--------cceeeEEEEEeecCCEEEEeeccCCCccccccCCcE
Q 043816 264 LYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGG-VFG--------IFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~-~~~--------~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~ 333 (378)
|++...... +|.+.+- .+..+.+|+.. ... ......-+++.++++.+|+.. ....+
T Consensus 164 lyvn~~~~~----~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg----------k~~~~ 229 (266)
T 2iwa_A 164 VWANIWQTD----CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG----------KLWPK 229 (266)
T ss_dssp EEEEETTSS----EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE----------TTCSE
T ss_pred EEEecCCCC----eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC----------CCCCe
Confidence 875543322 5666665 67777788762 100 011234467777888888873 35677
Q ss_pred EEEEECCCC
Q 043816 334 LDWYDLQNQ 342 (378)
Q Consensus 334 l~~yd~~t~ 342 (378)
++..++.+.
T Consensus 230 v~~i~l~~~ 238 (266)
T 2iwa_A 230 LFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecc
Confidence 877765543
No 142
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=64.25 E-value=80 Score=28.19 Aligned_cols=194 Identities=11% Similarity=0.138 Sum_probs=98.9
Q ss_pred cc-eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 109 NG-LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 109 ~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
+| +|+....+..+.|||..+++....-... ......+.+.+.+. + ++... ....+.+++.+++.
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~p~~~-~-l~s~s-------~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGH------EQDIYSLDYFPSGD-K-LVSGS-------GDRTVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTSS-E-EEEEE-------TTSEEEEEETTTTE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccC------CCCEEEEEEcCCCC-E-EEEec-------CCCcEEEEECCCCe
Confidence 55 4444445678999999988765432221 23455667766543 2 22222 24578888888775
Q ss_pred eEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCC-CCCCCCeeEEEEe-C
Q 043816 188 SRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLE-NRDSGNLMYMGNF-S 261 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~-~~~~~~~~~l~~~-~ 261 (378)
-...- .... .-..+.+ +|.+...+..+ ..|..+|+.+... ..+..+... ..+...-..+... +
T Consensus 199 ~~~~~-~~~~----~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 267 (393)
T 1erj_A 199 CSLTL-SIED----GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267 (393)
T ss_dssp EEEEE-ECSS----CEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred eEEEE-EcCC----CcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence 43222 1110 0012222 45443333322 2388899887643 233322211 1111202233333 5
Q ss_pred CeEEEEEecCCCCcEEEEEEcC-ce----------eeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKE-SW----------TKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN 330 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~-~W----------~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~ 330 (378)
|++.+.+..+. .+.+|.++. .- .....+.. ......-+++..+|..|+.. ..
T Consensus 268 g~~l~s~s~d~--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~sg-----------s~ 330 (393)
T 1erj_A 268 GQSVVSGSLDR--SVKLWNLQNANNKSDSKTPNSGTCEVTYIG----HKDFVLSVATTQNDEYILSG-----------SK 330 (393)
T ss_dssp SSEEEEEETTS--EEEEEEC---------------CEEEEEEC----CSSCEEEEEECGGGCEEEEE-----------ET
T ss_pred CCEEEEEeCCC--EEEEEECCCCCCcccccCCCCCcceEEEec----ccCcEEEEEECCCCCEEEEE-----------eC
Confidence 66666666555 999999875 11 00111110 01123335666778777777 47
Q ss_pred CcEEEEEECCCCeEE
Q 043816 331 KWELDWYDLQNQRAA 345 (378)
Q Consensus 331 ~~~l~~yd~~t~~~~ 345 (378)
++.+.+||.++++..
T Consensus 331 D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 331 DRGVLFWDKKSGNPL 345 (393)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCeEE
Confidence 889999999988765
No 143
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=64.15 E-value=66 Score=27.21 Aligned_cols=197 Identities=10% Similarity=0.009 Sum_probs=101.0
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
++........++++||.++ ...+.... ....++.+++... ++.... ....+.+|+..++..+.
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg~---l~v~~~------~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS-------HHQNGHCLNKQGH---LIACSH------GLRRLERQREPGGEWES 104 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSC-------SSEEEEEECTTCC---EEEEET------TTTEEEEECSTTCCEEE
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCC-------CCcceeeECCCCc---EEEEec------CCCeEEEEcCCCCcEEE
Confidence 4444444568999999998 55554321 2345667777543 222210 23568888888888766
Q ss_pred eeccCCcc-ccCCCC-ceEECCeeEEEEE---e-C-------CCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEE
Q 043816 191 IRVDFPYY-FSHPRD-GTFARGHVHWLVL---N-E-------PEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYM 257 (378)
Q Consensus 191 ~~~~~p~~-~~~~~~-~v~~~G~lYwl~~---~-~-------~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l 257 (378)
........ ...... .+--+|.+|+... . . ........|..+|.. .+...+.-.... --.+
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~------~~gi 177 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK------PNGL 177 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS------EEEE
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC------CccE
Confidence 54111111 111111 2233688766421 0 0 000112368999987 444444211110 1223
Q ss_pred EE-eCCeEEEEEecCCCCcEEEEEEcC--ce-eeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcE
Q 043816 258 GN-FSGCLYFSCFCDYPEPVDIWIMKE--SW-TKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 258 ~~-~~G~L~l~~~~~~~~~i~iW~l~~--~W-~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~ 333 (378)
+. .+|++.++..... .+.+|.++. .. .....+... .....-+++..+|. |++. ....
T Consensus 178 ~~s~dg~~lv~~~~~~--~i~~~~~~~~g~~~~~~~~~~~~----~~~p~~i~~d~~G~-l~v~------------~~~~ 238 (296)
T 3e5z_A 178 AFLPSGNLLVSDTGDN--ATHRYCLNARGETEYQGVHFTVE----PGKTDGLRVDAGGL-IWAS------------AGDG 238 (296)
T ss_dssp EECTTSCEEEEETTTT--EEEEEEECSSSCEEEEEEEECCS----SSCCCSEEEBTTSC-EEEE------------ETTE
T ss_pred EECCCCCEEEEeCCCC--eEEEEEECCCCcCcCCCeEeeCC----CCCCCeEEECCCCC-EEEE------------cCCe
Confidence 33 3576653333333 888888863 44 223333110 01111256666776 6666 2678
Q ss_pred EEEEECCCCeEEEEEEEe
Q 043816 334 LDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 334 l~~yd~~t~~~~~~v~~~ 351 (378)
|..||++++.++ .+...
T Consensus 239 v~~~~~~g~~~~-~~~~~ 255 (296)
T 3e5z_A 239 VHVLTPDGDELG-RVLTP 255 (296)
T ss_dssp EEEECTTSCEEE-EEECS
T ss_pred EEEECCCCCEEE-EEECC
Confidence 999999988777 76543
No 144
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=63.87 E-value=59 Score=29.65 Aligned_cols=112 Identities=8% Similarity=0.085 Sum_probs=58.4
Q ss_pred ECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCCeEEEEEecCCCCcEEEEEEcC--c
Q 043816 208 ARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSGCLYFSCFCDYPEPVDIWIMKE--S 284 (378)
Q Consensus 208 ~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~--~ 284 (378)
-+|.|||..... ..|..+|+.+.....+.... . .. . ++. .+|+..++..... .-.||.++. .
T Consensus 140 ~~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~--~--~~-~--ia~~~~g~~l~~~d~~~--~~~I~~~d~~~~ 204 (409)
T 3hrp_A 140 GNNTVLAYQRDD------PRVRLISVDDNKVTTVHPGF--K--GG-K--PAVTKDKQRVYSIGWEG--THTVYVYMKASG 204 (409)
T ss_dssp STTEEEEEETTT------TEEEEEETTTTEEEEEEETC--C--BC-B--CEECTTSSEEEEEBSST--TCEEEEEEGGGT
T ss_pred CCCCEEEEecCC------CcEEEEECCCCEEEEeeccC--C--CC-c--eeEecCCCcEEEEecCC--CceEEEEEcCCC
Confidence 368999886432 35999999987776553221 1 11 2 322 2344333333222 115666654 5
Q ss_pred eeeeEEEec-CccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 285 WTKVFSFAG-GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 285 W~~~~~i~~-~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
|.. ..+.. .. .......-++++++++.|++. .....++.||++++... .+
T Consensus 205 ~~~-~~~g~~~~-~~~~~p~~iav~p~~g~lyv~-----------d~~~~I~~~d~~~~~~~-~~ 255 (409)
T 3hrp_A 205 WAP-TRIGQLGS-TFSGKIGAVALDETEEWLYFV-----------DSNKNFGRFNVKTQEVT-LI 255 (409)
T ss_dssp TCE-EEEEECCT-TSCSCCCBCEECTTSSEEEEE-----------CTTCEEEEEETTTCCEE-EE
T ss_pred cee-EEeeeccc-hhcCCcEEEEEeCCCCeEEEE-----------ECCCcEEEEECCCCCEE-EE
Confidence 542 22211 00 001112235666645566666 24568999999888766 55
No 145
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.37 E-value=83 Score=28.08 Aligned_cols=194 Identities=8% Similarity=0.019 Sum_probs=97.0
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|+....+..+.|||..+++....-... ......+.+++ + .++... ....+.+|+.++..-..
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~---~-~l~~~~-------~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLRTMAGH------QARVGCLSWNR---H-VLSSGS-------RSGAIHHHDVRIANHQI 210 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEEET---T-EEEEEE-------TTSEEEEEETTSSSCEE
T ss_pred EEEEECCCCeEEEEECcCCeEEEEecCC------CCceEEEEECC---C-EEEEEc-------CCCCEEEEecccCccee
Confidence 4444445667899998887755432211 22344455543 2 222222 24577888877432111
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe--CCeEE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF--SGCLY 265 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~--~G~L~ 265 (378)
.. +.. ....-.++.+ +|.....+..+ ..|..+|+.+..... +...... -..+... ++.+.
T Consensus 211 ~~--~~~-~~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~------v~~~~~~p~~~~ll 275 (401)
T 4aez_A 211 GT--LQG-HSSEVCGLAWRSDGLQLASGGND------NVVQIWDARSSIPKFTKTNHNAA------VKAVAWCPWQSNLL 275 (401)
T ss_dssp EE--EEC-CSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCSSEEEEECCCSSC------CCEEEECTTSTTEE
T ss_pred eE--EcC-CCCCeeEEEEcCCCCEEEEEeCC------CeEEEccCCCCCccEEecCCcce------EEEEEECCCCCCEE
Confidence 11 000 0000012222 45544444332 238899998754432 2211111 1223333 23455
Q ss_pred EEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 266 FSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 266 l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+.+.......+.+|.+.. ......+.. .....-+.+.++|..++.... ..++.+.+||+++++..
T Consensus 276 ~~~~gs~d~~i~i~d~~~-~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g---------~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAAT-GARVNTVDA-----GSQVTSLIWSPHSKEIMSTHG---------FPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp EEECCTTTCEEEEEETTT-CCEEEEEEC-----SSCEEEEEECSSSSEEEEEEC---------TTTCEEEEEEEETTEEE
T ss_pred EEecCCCCCEEEEEECCC-CCEEEEEeC-----CCcEEEEEECCCCCeEEEEee---------cCCCcEEEEecCCccce
Confidence 544322223899998876 122333333 112344667778888877520 36789999999998877
Q ss_pred EEEE-Eec
Q 043816 346 GQVT-VHG 352 (378)
Q Consensus 346 ~~v~-~~~ 352 (378)
.+. +.+
T Consensus 341 -~~~~~~~ 347 (401)
T 4aez_A 341 -KQVDIPA 347 (401)
T ss_dssp -EEEEEEC
T ss_pred -eEEEecC
Confidence 543 444
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=63.22 E-value=70 Score=27.20 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=57.7
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEE
Q 043816 227 LIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKAL 305 (378)
Q Consensus 227 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~ 305 (378)
.|..+|+.+.+...+.++.... . -..+... +|+..++. . ..+.+|.++. ...+..+.... ...-+
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~---~-~~~~~~s~dg~~l~~~--~--~~v~~~d~~~-~~~~~~~~~~~-----~~~~~ 285 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDV---F-YFSTAVNPAKTRAFGA--Y--NVLESFDLEK-NASIKRVPLPH-----SYYSV 285 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSS---C-EEEEEECTTSSEEEEE--E--SEEEEEETTT-TEEEEEEECSS-----CCCEE
T ss_pred ceEEEeCCCCCceEeecCCCCC---c-eeeEEECCCCCEEEEe--C--CeEEEEECCC-CcCcceecCCC-----ceeeE
Confidence 4889999887665443322211 1 2223322 45444443 2 3788887765 22333444311 12235
Q ss_pred EEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 306 AYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 306 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
++.++|+.++.. ..+..+.+||+++++..+.+...
T Consensus 286 ~~s~dg~~l~~~-----------~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 286 NVSTDGSTVWLG-----------GALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EECTTSCEEEEE-----------SBSSEEEEEETTTCCEEEEEECG
T ss_pred EECCCCCEEEEE-----------cCCCcEEEEECcCCcEEEEEEcC
Confidence 677888888887 36789999999998776355443
No 147
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=63.07 E-value=82 Score=27.94 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=44.8
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecC-ccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGG-VFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~-~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
+|+..+.+..+. .+.||.+.. .-...+..... ..........+++.++|..++.. ..++.+.+||
T Consensus 260 ~~~~l~s~s~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----------~~dg~i~vwd 326 (380)
T 3iz6_a 260 DGQRFGTGSDDG--TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-----------YSNGDCYVWD 326 (380)
T ss_dssp TSSEEEEECSSS--CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE-----------CTTSCEEEEE
T ss_pred CCCeEEEEcCCC--eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE-----------ECCCCEEEEE
Confidence 566666666555 999999876 21212211111 01111223446778899888887 4788999999
Q ss_pred CCCCeEE
Q 043816 339 LQNQRAA 345 (378)
Q Consensus 339 ~~t~~~~ 345 (378)
..+++..
T Consensus 327 ~~~~~~~ 333 (380)
T 3iz6_a 327 TLLAEMV 333 (380)
T ss_dssp TTTCCEE
T ss_pred CCCCceE
Confidence 9887765
No 148
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=61.86 E-value=73 Score=26.96 Aligned_cols=194 Identities=10% Similarity=-0.003 Sum_probs=91.3
Q ss_pred CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEe-eccC
Q 043816 117 GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRI-RVDF 195 (378)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~-~~~~ 195 (378)
....++++||.+++...+..+.... ......++.+++..+. +.... ....+.+|+.. +..+.. . ..
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~--~~~~~~~i~~~~~~g~--l~v~~-------~~~~l~~~d~~-g~~~~~~~-~~ 110 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNG--YGGIPAGCQCDRDANQ--LFVAD-------MRLGLLVVQTD-GTFEEIAK-KD 110 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETT--EECCEEEEEECSSSSE--EEEEE-------TTTEEEEEETT-SCEEECCS-BC
T ss_pred CCCEEEEEeCCCCcEEEEEecccCC--CCCCCceEEEecCCCc--EEEEE-------CCCCEEEEeCC-CCEEEEEe-cc
Confidence 3557999999999887654311000 0123455666665332 22221 11257778887 766554 3 11
Q ss_pred Ccccc-CCCCceEE--CCeeEEEEEeCC---------CCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE----
Q 043816 196 PYYFS-HPRDGTFA--RGHVHWLVLNEP---------EGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN---- 259 (378)
Q Consensus 196 p~~~~-~~~~~v~~--~G~lYwl~~~~~---------~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~---- 259 (378)
..... ..-..+.+ +|.+|+...... .......|..+|.. .++..+.-. .. . ...++.
T Consensus 111 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~---~-~~~i~~~~~~ 183 (314)
T 1pjx_A 111 SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQ---F-PNGIAVRHMN 183 (314)
T ss_dssp TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ES---S-EEEEEEEECT
T ss_pred CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CC---C-cceEEEeccc
Confidence 11111 11123444 577765543210 00112458899987 444433110 00 0 111222
Q ss_pred -eCC-eEEEEEecCCCCcEEEEEEc-C-ceeeeEEEecCccccc-eeeEEEEEeecCCEEEEeeccCCCccccccCCcEE
Q 043816 260 -FSG-CLYFSCFCDYPEPVDIWIMK-E-SWTKVFSFAGGVFGIF-TYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWEL 334 (378)
Q Consensus 260 -~~G-~L~l~~~~~~~~~i~iW~l~-~-~W~~~~~i~~~~~~~~-~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l 334 (378)
.+| .|++...... .+.+|.++ + .......+.. ..... ....-+++.++|. +++.. .....+
T Consensus 184 d~dg~~l~v~~~~~~--~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~i~~d~~G~-l~v~~----------~~~~~i 249 (314)
T 1pjx_A 184 DGRPYQLIVAETPTK--KLWSYDIKGPAKIENKKVWGH-IPGTHEGGADGMDFDEDNN-LLVAN----------WGSSHI 249 (314)
T ss_dssp TSCEEEEEEEETTTT--EEEEEEEEETTEEEEEEEEEE-CCCCSSCEEEEEEEBTTCC-EEEEE----------ETTTEE
T ss_pred CCCCCEEEEEECCCC--eEEEEECCCCCccccceEEEE-CCCCCCCCCCceEECCCCC-EEEEE----------cCCCEE
Confidence 345 4555544333 78888775 2 3322222111 00000 2223356666776 44442 256789
Q ss_pred EEEECCCCeE
Q 043816 335 DWYDLQNQRA 344 (378)
Q Consensus 335 ~~yd~~t~~~ 344 (378)
..||+++++.
T Consensus 250 ~~~d~~~g~~ 259 (314)
T 1pjx_A 250 EVFGPDGGQP 259 (314)
T ss_dssp EEECTTCBSC
T ss_pred EEEcCCCCcE
Confidence 9999995543
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=61.83 E-value=1.2e+02 Score=29.57 Aligned_cols=194 Identities=7% Similarity=0.034 Sum_probs=96.1
Q ss_pred eEEEEcCCC-cceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCcc
Q 043816 120 DIALWNPST-KKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYY 198 (378)
Q Consensus 120 ~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 198 (378)
.++++|..+ ++...+...... ......+.+ |++ ++-++.... . ......+.+++..++..+.+.......
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~-pDg-~~l~~~~~~-~--~~~~~~i~~~d~~~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQ----DIYLARVNW-RDP-QHLSFQRQS-R--DQKKLDLVEVTLASNQQRVLAHETSPT 334 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCS----SEEEEEEEE-EET-TEEEEEEEE-T--TSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred EEEEEECCCCCceEEecCCCCc----ceEEEEEEe-CCC-CEEEEEEec-c--cCCeEEEEEEECCCCceEEEEEcCCCC
Confidence 688999999 887766543111 344555666 554 333333221 1 123567888888888776654110100
Q ss_pred c--cCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEE--EEeCCe-EEEEEecCCC
Q 043816 199 F--SHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYM--GNFSGC-LYFSCFCDYP 273 (378)
Q Consensus 199 ~--~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l--~~~~G~-L~l~~~~~~~ 273 (378)
. ........-+|.+++.+... ....|..+|+.+. ...+... .. . -..+ ...+|+ |++....+..
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~----g~~~l~~~~~~~~-~~~l~~~--~~---~-v~~~~~~s~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERT----GFQHLYRIDSKGK-AAALTHG--NW---S-VDELLAVDEKAGLAYFRAGIESA 403 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTT----SSCEEEEECSSSC-EEESCCS--SS---C-EEEEEEEETTTTEEEEEECSSCT
T ss_pred cCCcCCceEECCCCeEEEEecCC----CccEEEEEcCCCC-eeeeeec--ce---E-EEeEeEEeCCCCEEEEEEeCCCC
Confidence 0 00111233478877765432 2346888887666 4433221 11 1 2222 233564 5555544444
Q ss_pred CcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 274 EPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 274 ~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
..+.||.++..=.....+.. ......+.+.++|+.+++..... .....++.+|.+++..+
T Consensus 404 ~~~~l~~~~~~g~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~-------~~p~~~~l~~~~~~~~~ 463 (741)
T 2ecf_A 404 RESQIYAVPLQGGQPQRLSK-----APGMHSASFARNASVYVDSWSNN-------STPPQIELFRANGEKIA 463 (741)
T ss_dssp TCBEEEEEETTCCCCEECCC-----SCSEEEEEECTTSSEEEEEEEET-------TEEEEEEEEETTSCEEE
T ss_pred ceEEEEEEEcCCCCeeeccc-----CCCceEEEECCCCCEEEEEecCC-------CCCCeEEEEEcCCCeEE
Confidence 47889988631011222222 11123456667777666652100 11245777776555443
No 150
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=61.60 E-value=1e+02 Score=28.43 Aligned_cols=53 Identities=8% Similarity=-0.050 Sum_probs=32.4
Q ss_pred ceEEC-----CeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEE-EeCCeEEEEEec
Q 043816 205 GTFAR-----GHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMG-NFSGCLYFSCFC 270 (378)
Q Consensus 205 ~v~~~-----G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~-~~~G~L~l~~~~ 270 (378)
++.++ |.|||.-.. ..|..+|+.+.....+..+.. . -..++ ..+|+|+++...
T Consensus 143 gvavd~~s~~g~Lyv~D~~-------~~I~~id~~~g~v~~~~~~~~-----~-P~giavd~dG~lyVad~~ 201 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQR-------DAFRHVDFVNQYVDIKTTNIG-----Q-CADVNFTLNGDMVVVDDQ 201 (433)
T ss_dssp EEEECTTTTTCEEEEECBT-------SCEEEEETTTTEEEEECCCCS-----C-EEEEEECTTCCEEEEECC
T ss_pred eEEEccccCCCEEEEEeCC-------CCEEEEECCCCEEEEeecCCC-----C-ccEEEECCCCCEEEEcCC
Confidence 66666 899987543 349999998887776632111 1 22232 335777777653
No 151
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=61.15 E-value=76 Score=26.93 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=36.8
Q ss_pred CeEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecC---CEEEEeeccCCCccccccCCcEEE
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSG---DKVLVDKFLYDEDEDEGINKWELD 335 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g---~~vl~~~~~~~~~~~~~~~~~~l~ 335 (378)
+++.+.+..+. .+.||.++. .|.....+... .....-+++.+++ ..+... ..++.+.
T Consensus 170 ~~~l~sgs~D~--~v~lwd~~~~~~~~~~~~~l~~H----~~~V~~v~~sp~~~~~~~las~-----------s~D~~v~ 232 (297)
T 2pm7_B 170 SRKFVTGGADN--LVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYMASV-----------SQDRTCI 232 (297)
T ss_dssp CCEEEEEETTS--CEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEE-----------ETTSCEE
T ss_pred cceEEEEcCCC--cEEEEEEcCCCceEEEEEEecCC----CCceEEEEECCCCCCceEEEEE-----------ECCCcEE
Confidence 44555555555 899999876 46666655531 1122334555553 344444 3567788
Q ss_pred EEECCCC
Q 043816 336 WYDLQNQ 342 (378)
Q Consensus 336 ~yd~~t~ 342 (378)
.||+++.
T Consensus 233 iWd~~~~ 239 (297)
T 2pm7_B 233 IWTQDNE 239 (297)
T ss_dssp EEEESST
T ss_pred EEEeCCC
Confidence 8877663
No 152
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=60.92 E-value=89 Score=27.66 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=91.1
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
.+.|++.. ...+...++-+.+...+-+. .....++.+|+..+. |..... ....+..++..+..-
T Consensus 44 ~~~ll~~~-~~~I~~i~~~g~~~~~~~~~-------~~~~~~l~~d~~~~~--ly~~D~------~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 44 EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-------LENAIALDFHHRREL--VFWSDV------TLDRILRANLNGSNV 107 (349)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCEEEEECS-------CSCEEEEEEETTTTE--EEEEET------TTTEEEEEETTSCSC
T ss_pred CceeEeec-ccceEEEeCCCCeeEEeecC-------CCceEEEEEeccccE--EEEEec------cCCceEEEecCCCCc
Confidence 45555554 34567777766655544221 234577888876553 332221 234566677666544
Q ss_pred EEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe--CCe
Q 043816 189 RRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF--SGC 263 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~--~G~ 263 (378)
+.+. .. ..... .++.+ +|.|||..... ..|.++|+....-..+. ..... . -..+++. +|.
T Consensus 108 ~~~~-~~--~~~~p-~glavd~~~g~ly~~d~~~------~~I~~~~~dG~~~~~l~-~~~l~---~-P~~iavdp~~g~ 172 (349)
T 3v64_C 108 EEVV-ST--GLESP-GGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLL-WQSLE---K-PRAIALHPMEGT 172 (349)
T ss_dssp EEEE-CS--SCSCC-CEEEEETTTTEEEEEETTT------TEEEEEETTSCSCEEEE-CTTCS---C-EEEEEEETTTTE
T ss_pred eEEE-eC--CCCCc-cEEEEecCCCeEEEEcCCC------CeEEEEcCCCCceEEEE-eCCCC---C-cceEEEecCcCe
Confidence 4332 10 11111 24443 68999986433 35999999765433331 11111 1 2223333 577
Q ss_pred EEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 264 LYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
|+....... ..|....++..-. ..+-. .......-+++...++.|++.. ....++..+|++...
T Consensus 173 ly~td~~~~-~~I~r~~~dG~~~--~~~~~---~~~~~PnGla~d~~~~~lY~aD----------~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 173 IYWTDWGNT-PRIEASSMDGSGR--RIIAD---THLFWPNGLTIDYAGRRMYWVD----------AKHHVIERANLDGSH 236 (349)
T ss_dssp EEEEECSSS-CEEEEEETTSCSC--EESCC---SSCSCEEEEEEETTTTEEEEEE----------TTTTEEEEEETTSCS
T ss_pred EEEeccCCC-CEEEEEeCCCCCc--EEEEE---CCCCCcceEEEeCCCCEEEEEE----------CCCCEEEEEeCCCCc
Confidence 777754331 1444443333111 11100 0111223345554556666663 244567777766544
Q ss_pred EE
Q 043816 344 AA 345 (378)
Q Consensus 344 ~~ 345 (378)
.+
T Consensus 237 ~~ 238 (349)
T 3v64_C 237 RK 238 (349)
T ss_dssp CE
T ss_pred eE
Confidence 44
No 153
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=60.88 E-value=97 Score=28.08 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=99.4
Q ss_pred ecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 106 DTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 106 ~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
...+++|+....+..+.|||..+++...--... ......+.+.+.+ .++... ....+.+++.++
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h------~~~V~~l~~~~~~---~l~s~s-------~dg~i~vwd~~~ 192 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVWALKYAHGG---ILVSGS-------TDRTVRVWDIKK 192 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECSTT---EEEEEE-------TTSCEEEEETTT
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEEEEEeCC------CcCEEEEEEcCCC---EEEEEe-------CCCCEEEEECCC
Confidence 334556665556778999999888765422211 2344555555433 333332 245688888887
Q ss_pred CceEEeeccCCccccCCCCceEE----CCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-----------cCCCCC---
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFA----RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-----------PLPHLE--- 247 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~----~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-----------~~P~~~--- 247 (378)
+.-...- .. ....-.++.+ +|. +.++...+ ..|..+|+.+..-... ..|...
T Consensus 193 ~~~~~~~---~~-h~~~v~~l~~~~~~~~~-~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 193 GCCTHVF---EG-HNSTVRCLDIVEYKNIK-YIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp TEEEEEE---CC-CSSCEEEEEEEESSSCE-EEEEEETT-----SCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred CcEEEEE---CC-CCCccEEEEEecCCCCC-EEEEEcCC-----CcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 6422211 10 0000012221 233 23333322 2377888876542110 001000
Q ss_pred ----CCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCC
Q 043816 248 ----NRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDE 323 (378)
Q Consensus 248 ----~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~ 323 (378)
..+.. ...-...+|.+.+++..+. .+.+|.+.. ...+..+... ......+++.++|..++..
T Consensus 263 ~~~~~~~~~-~v~~~~~~~~~l~~~~~d~--~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg------ 328 (464)
T 3v7d_B 263 VGVLRGHMA-SVRTVSGHGNIVVSGSYDN--TLIVWDVAQ-MKCLYILSGH----TDRIYSTIYDHERKRCISA------ 328 (464)
T ss_dssp EEEECCCSS-CEEEEEEETTEEEEEETTS--CEEEEETTT-TEEEEEECCC----SSCEEEEEEETTTTEEEEE------
T ss_pred EEEccCccc-eEEEEcCCCCEEEEEeCCC--eEEEEECCC-CcEEEEecCC----CCCEEEEEEcCCCCEEEEE------
Confidence 00011 2222344566666666655 899998865 1222333320 1123346667788888777
Q ss_pred ccccccCCcEEEEEECCCCeEE
Q 043816 324 DEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 324 ~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
..++.+..||+++++..
T Consensus 329 -----~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 329 -----SMDTTIRIWDLENGELM 345 (464)
T ss_dssp -----ETTSCEEEEETTTTEEE
T ss_pred -----eCCCcEEEEECCCCcEE
Confidence 47788999999988766
No 154
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=60.33 E-value=88 Score=27.41 Aligned_cols=196 Identities=6% Similarity=0.007 Sum_probs=91.0
Q ss_pred EEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc--eE
Q 043816 112 IALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS--SR 189 (378)
Q Consensus 112 l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~--W~ 189 (378)
++....+..+.++|..+++....-... ......+.+.|.... .++... ....+.+|+.+++. ..
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~-ll~~~~-------~dg~i~i~d~~~~~~~~~ 224 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSCSHILQGH------RQEILAVSWSPRYDY-ILATAS-------ADSRVKLWDVRRASGCLI 224 (408)
T ss_dssp EEEEESSSSEEEEESSSSCCCEEECCC------CSCEEEEEECSSCTT-EEEEEE-------TTSCEEEEETTCSSCCSE
T ss_pred EEEEcCCCeEEEEeCCCcceeeeecCC------CCcEEEEEECCCCCc-EEEEEc-------CCCcEEEEECCCCCcccc
Confidence 333334556888888776544321111 234556666665443 222222 23467888887643 22
Q ss_pred Eeecc---C---Ccc-ccCCCC---ceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecC-CCCCCCCCCCeeE
Q 043816 190 RIRVD---F---PYY-FSHPRD---GTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPL-PHLENRDSGNLMY 256 (378)
Q Consensus 190 ~~~~~---~---p~~-~~~~~~---~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~-P~~~~~~~~~~~~ 256 (378)
..... . ... ...... ++.+ +|.....+..+ ..|..+|+.+..-..... .............
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
T 4a11_B 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298 (408)
T ss_dssp ECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE
T ss_pred cccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC------CeEEEEECCCCccceeccccccccccccceeE
Confidence 22100 0 000 000011 2333 45433333322 238899988765432211 1100000110222
Q ss_pred EEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEE
Q 043816 257 MGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDW 336 (378)
Q Consensus 257 l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~ 336 (378)
.....+...++...+. .+.+|.+.. ...+..+... .....-+++.++|..|+.. ..++.+.+
T Consensus 299 ~~~~~~~~~~~~~~~~--~i~v~d~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~-----------~~dg~i~i 360 (408)
T 4a11_B 299 VSCGCSSEFVFVPYGS--TIAVYTVYS-GEQITMLKGH----YKTVDCCVFQSNFQELYSG-----------SRDCNILA 360 (408)
T ss_dssp ECCSSSSCEEEEEETT--EEEEEETTT-CCEEEEECCC----SSCEEEEEEETTTTEEEEE-----------ETTSCEEE
T ss_pred EecCCCceEEEEecCC--EEEEEECcC-CcceeeeccC----CCeEEEEEEcCCCCEEEEE-----------CCCCeEEE
Confidence 2222233333334444 899998865 1233334321 1123346777888888877 47889999
Q ss_pred EECCCCeEE
Q 043816 337 YDLQNQRAA 345 (378)
Q Consensus 337 yd~~t~~~~ 345 (378)
||+++.+..
T Consensus 361 w~~~~~~~~ 369 (408)
T 4a11_B 361 WVPSLYEPV 369 (408)
T ss_dssp EEECC----
T ss_pred EeCCCCCcc
Confidence 999998765
No 155
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=60.17 E-value=85 Score=27.83 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=36.3
Q ss_pred EEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 277 DIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 277 ~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
.||+.+- ....+.+++... ..-+++.++|..++.. .. +.+.+||.+|++++ .+.
T Consensus 287 ~v~viD~~t~~~v~~i~~~~------p~~ia~spdg~~l~v~-----------n~-~~v~v~D~~t~~l~-~~~ 341 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD------ALSMTIDQQRNLMLTL-----------DG-GNVNVYDISQPEPK-LLR 341 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT------CCEEEEETTTTEEEEE-----------CS-SCEEEEECSSSSCE-EEE
T ss_pred eEEEEECCCCcEEEEEecCC------eeEEEECCCCCEEEEe-----------CC-CeEEEEECCCCcce-eeE
Confidence 4444444 456677777621 3457788899977776 23 89999999999445 444
No 156
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=59.34 E-value=1.1e+02 Score=28.22 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=48.7
Q ss_pred CCeEEEEEecCC-----CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCC-EEEEeeccCCCccccccCCcE
Q 043816 261 SGCLYFSCFCDY-----PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGD-KVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 261 ~G~L~l~~~~~~-----~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~ 333 (378)
+++|++...... ...=+||+.+- .+..+.+|+.. ....-+.+.++|. .++..+ ..++.
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-----~~P~gia~spDg~~~lyv~n----------~~s~~ 394 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-----HEIDSINVSQDAEPLLYALS----------AGTQT 394 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----EEECEEEECCSSSCEEEEEE----------TTTTE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-----CCcCeEEEccCCCEEEEEEc----------CCCCe
Confidence 467777754211 01346888877 88888888872 1233366778888 777773 24789
Q ss_pred EEEEECCCCeEE
Q 043816 334 LDWYDLQNQRAA 345 (378)
Q Consensus 334 l~~yd~~t~~~~ 345 (378)
|.++|++|.+..
T Consensus 395 VsVID~~t~kvv 406 (426)
T 3c75_H 395 LHIYDAATGEEL 406 (426)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCCEE
Confidence 999999999988
No 157
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=59.16 E-value=79 Score=26.48 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=52.4
Q ss_pred EEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEE
Q 043816 227 LIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKA 304 (378)
Q Consensus 227 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 304 (378)
.|..+|+.+.+. ..+...... -..+... +|+ .+++..+. .+.+|.++. ......+... .....-
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~------i~~~~~~~~~~-l~~~~~dg--~v~iwd~~~-~~~~~~~~~~----~~~i~~ 271 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHESF------VYCIKLLPNGD-IVSCGEDR--TVRIWSKEN-GSLKQVITLP----AISIWS 271 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSSC------EEEEEECTTSC-EEEEETTS--EEEEECTTT-CCEEEEEECS----SSCEEE
T ss_pred eEEEEECCchhhhhhhhcCCce------EEEEEEecCCC-EEEEecCC--EEEEEECCC-CceeEEEecc----CceEEE
Confidence 599999986543 333322111 2333333 454 33344444 899998876 1222333321 112334
Q ss_pred EEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 305 LAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 305 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+.+.++|. ++.. ..++.+.+||++++++.
T Consensus 272 ~~~~~~~~-~~~~-----------~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 272 VDCMSNGD-IIVG-----------SSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEECTTSC-EEEE-----------ETTSCEEEEESCGGGCC
T ss_pred EEEccCCC-EEEE-----------eCCCcEEEEeCCCCcee
Confidence 56667777 4445 37889999999998877
No 158
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=58.49 E-value=1e+02 Score=27.65 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=94.0
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceE-
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSR- 189 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~- 189 (378)
+|+....+..+.|||..+++...--... ...+..+.+.|.++ + ++... ....+.+|+..++.-.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h------~~~V~~v~~~p~~~-~-l~s~s-------~D~~i~~wd~~~~~~~~ 228 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMHGH------DHNVSSVSIMPNGD-H-IVSAS-------RDKTIKMWEVQTGYCVK 228 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCCCC------SSCEEEEEECSSSS-E-EEEEE-------TTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCC------CCCEEEEEEeCCCC-E-EEEEe-------CCCeEEEEECCCCcEEE
Confidence 4444445678899999887765432221 23455666776543 2 22222 2457888888776421
Q ss_pred EeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCC------C---------C
Q 043816 190 RIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENR------D---------S 251 (378)
Q Consensus 190 ~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~------~---------~ 251 (378)
... .-.. .-..+.+ +|.+...+..+. .|..+|+.+..... +........ + .
T Consensus 229 ~~~-~h~~----~v~~~~~~~~g~~l~s~s~D~------~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 229 TFT-GHRE----WVRMVRPNQDGTLIASCSNDQ------TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp EEE-CCSS----CEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred EEe-CCCc----cEEEEEECCCCCEEEEEcCCC------eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence 111 0000 0001221 344443333321 37778876654322 211110000 0 0
Q ss_pred CCeeEEEEeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCC
Q 043816 252 GNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK 331 (378)
Q Consensus 252 ~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 331 (378)
+.........|.+.+.+..+. .+.+|.+... .....+... .....-+.+.++|..|+.. ..+
T Consensus 298 ~~~~~~~~~~g~~l~sgs~D~--~i~iwd~~~~-~~~~~~~~h----~~~v~~v~~~~~g~~l~s~-----------s~D 359 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLSGSRDK--TIKMWDVSTG-MCLMTLVGH----DNWVRGVLFHSGGKFILSC-----------ADD 359 (410)
T ss_dssp SCC-------CCEEEEEETTS--EEEEEETTTT-EEEEEEECC----SSCEEEEEECSSSSCEEEE-----------ETT
T ss_pred cccccccCCCCCEEEEEeCCC--eEEEEECCCC-ceEEEEECC----CCcEEEEEEcCCCCEEEEE-----------eCC
Confidence 000001111355666666555 8999998761 122233220 1123345667788877777 478
Q ss_pred cEEEEEECCCCeEE
Q 043816 332 WELDWYDLQNQRAA 345 (378)
Q Consensus 332 ~~l~~yd~~t~~~~ 345 (378)
+.+.+||.++++..
T Consensus 360 ~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 360 KTLRVWDYKNKRCM 373 (410)
T ss_dssp TEEEEECCTTSCCC
T ss_pred CeEEEEECCCCceE
Confidence 89999999887654
No 159
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=58.34 E-value=90 Score=26.89 Aligned_cols=138 Identities=21% Similarity=0.244 Sum_probs=68.5
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC---CceEEeeccC
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS---NSSRRIRVDF 195 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t---~~W~~~~~~~ 195 (378)
..+++++|.+++...+... .....++.+++..+ .+.... .....+.+|+..+ +..+... ..
T Consensus 165 g~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~dg~--~lyv~d------~~~~~I~~~~~~~~~~~~~~~~~-~~ 228 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKE-------LHVPGGAEVSADSS--FVLVAE------FLSHQIVKYWLEGPKKGTAEVLV-KI 228 (322)
T ss_dssp EEEEEEETTTTEEEEEEEE-------ESCCCEEEECTTSS--EEEEEE------GGGTEEEEEESSSTTTTCEEEEE-EC
T ss_pred ceEEEEeCCCCEEEEeccC-------CccCcceEECCCCC--EEEEEe------CCCCeEEEEECCCCcCCccceEE-eC
Confidence 3577778877765543211 11122345555432 121111 0234677777764 3344433 22
Q ss_pred CccccCCCCceEE--CCeeEEEEEeCCCC-----CCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEE
Q 043816 196 PYYFSHPRDGTFA--RGHVHWLVLNEPEG-----YNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSC 268 (378)
Q Consensus 196 p~~~~~~~~~v~~--~G~lYwl~~~~~~~-----~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~ 268 (378)
+. -.++.+ +|.+ |++...... .....|..||...+....+..|..... .. -..+...+|+|++..
T Consensus 229 ~g-----P~gi~~d~~G~l-~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~-~~-~~~~~~~~g~L~v~~ 300 (322)
T 2fp8_A 229 PN-----PGNIKRNADGHF-WVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG-EH-FEQIQEHDGLLYIGT 300 (322)
T ss_dssp SS-----EEEEEECTTSCE-EEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT-SC-CCEEEEETTEEEEEC
T ss_pred CC-----CCCeEECCCCCE-EEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc-cc-ceEEEEeCCEEEEee
Confidence 21 123444 4775 444332000 002359999998887778877754311 11 222344678888876
Q ss_pred ecCCCCcEEEEEEc
Q 043816 269 FCDYPEPVDIWIMK 282 (378)
Q Consensus 269 ~~~~~~~i~iW~l~ 282 (378)
.... .|..+.++
T Consensus 301 ~~~~--~i~~~~~~ 312 (322)
T 2fp8_A 301 LFHG--SVGILVYD 312 (322)
T ss_dssp SSCS--EEEEEEC-
T ss_pred cCCC--ceEEEecc
Confidence 5544 66666554
No 160
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=57.75 E-value=98 Score=27.14 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=43.5
Q ss_pred CCeEEEEEecCCCCc-EEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 261 SGCLYFSCFCDYPEP-VDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~-i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
+|++.+.+..+. . +.||.++. ...+..+.... ......-+++.++|..++.. ..++.+.+||+
T Consensus 206 ~g~~l~s~s~d~--~~v~iwd~~~-~~~~~~~~~g~--h~~~v~~~~~s~~~~~l~s~-----------s~d~~v~iw~~ 269 (355)
T 3vu4_A 206 KSDMVATCSQDG--TIIRVFKTED-GVLVREFRRGL--DRADVVDMKWSTDGSKLAVV-----------SDKWTLHVFEI 269 (355)
T ss_dssp TSSEEEEEETTC--SEEEEEETTT-CCEEEEEECTT--CCSCEEEEEECTTSCEEEEE-----------ETTCEEEEEES
T ss_pred CCCEEEEEeCCC--CEEEEEECCC-CcEEEEEEcCC--CCCcEEEEEECCCCCEEEEE-----------ECCCEEEEEEc
Confidence 567666666555 7 99999875 23344444100 01123446777888887777 47789999999
Q ss_pred CCCeE
Q 043816 340 QNQRA 344 (378)
Q Consensus 340 ~t~~~ 344 (378)
++...
T Consensus 270 ~~~~~ 274 (355)
T 3vu4_A 270 FNDQD 274 (355)
T ss_dssp SCCSC
T ss_pred cCCCC
Confidence 87653
No 161
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=57.50 E-value=1.1e+02 Score=27.47 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=57.9
Q ss_pred EEEEEECCCceE-----eeecCCCCCCCC------CCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEec-
Q 043816 227 LIVAFDLKSEEF-----FEVPLPHLENRD------SGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAG- 293 (378)
Q Consensus 227 ~il~fD~~~~~~-----~~i~~P~~~~~~------~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~- 293 (378)
.|..+|+.+... ..+..+...... ...-..+... +|++.+++.. . .+.||.+......+..+..
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~--~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L--SVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S--EEEEEETTCCSSCSCCEESC
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C--eEEEEeCCCCccccceeecc
Confidence 488999987653 444443321000 0002233333 5666665554 4 9999998641112222222
Q ss_pred Ccc-cc-------ce--eeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 294 GVF-GI-------FT--YAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 294 ~~~-~~-------~~--~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
... .. .. ....+++.++|..|+.. ..++.+.+||+++++.. .+.
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~-----------s~dg~v~iwd~~~~~~~-~~~ 380 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG-----------SYNNFFRMFDRNTKRDI-TLE 380 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE-----------CSTTEEEEEETTTCCEE-EEE
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEe-----------ccCCEEEEEEcCCCcce-eee
Confidence 100 00 00 01125667888888777 47889999999999887 554
No 162
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=57.37 E-value=1.2e+02 Score=27.89 Aligned_cols=109 Identities=9% Similarity=0.047 Sum_probs=58.1
Q ss_pred CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCCe-EEEEEecCC-CCcEEEEEEcC-c
Q 043816 209 RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSGC-LYFSCFCDY-PEPVDIWIMKE-S 284 (378)
Q Consensus 209 ~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G~-L~l~~~~~~-~~~i~iW~l~~-~ 284 (378)
+|.||+.... ..|..||+.+.....+..+ .. . -..++. .+|+ |+++..... .....+|...+ .
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~~--~~---~-P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYSG--LS---K-VRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEECC--CS---C-EEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEecC--CC---C-cceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3888987543 3599999999877665321 11 1 223333 3465 777665432 12344555555 5
Q ss_pred eeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 285 WTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 285 W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
|.....+.. +....-+++.++++.|++.. ....+++.||++++...
T Consensus 216 ~~~~~~l~~-----~~~p~giavdp~~g~lyv~d----------~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 216 FKVITELTK-----GQNCNGAETHPINGELYFNS----------WNAGQVFRYDFTTQETT 261 (430)
T ss_dssp SCSEEEEEE-----CSSCCCEEECTTTCCEEEEE----------TTTTEEEEEETTTTEEE
T ss_pred eeeeeeecc-----CCCceEEEEeCCCCEEEEEE----------CCCCEEEEEECCCCcEE
Confidence 553333321 11122255665233355542 34567888888877764
No 163
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=56.58 E-value=1.1e+02 Score=27.54 Aligned_cols=116 Identities=8% Similarity=-0.081 Sum_probs=58.8
Q ss_pred eeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCC
Q 043816 147 LVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGY 223 (378)
Q Consensus 147 ~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~ 223 (378)
.+..+.++|..+.+-+++ . ....+.+++..++.-...- ... .....-.++.+ +|.+ .++...++
T Consensus 121 ~V~~l~~~P~~~~~lasG--s------~dg~i~lWd~~~~~~~~~~-~~~-gH~~~V~~l~f~p~~~~~-l~s~s~D~-- 187 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVG--S------KGGDIMLWNFGIKDKPTFI-KGI-GAGGSITGLKFNPLNTNQ-FYASSMEG-- 187 (435)
T ss_dssp CEEEEEECSSCTTCEEEE--E------TTSCEEEECSSCCSCCEEE-CCC-SSSCCCCEEEECSSCTTE-EEEECSSS--
T ss_pred CEEEEEEeCCCCCEEEEE--e------CCCEEEEEECCCCCceeEE-Ecc-CCCCCEEEEEEeCCCCCE-EEEEeCCC--
Confidence 456677777655432222 1 2346788887765433222 111 01111124444 3443 23333222
Q ss_pred CCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCCeEEEEEecCCCCcEEEEEEcC
Q 043816 224 NGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSGCLYFSCFCDYPEPVDIWIMKE 283 (378)
Q Consensus 224 ~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~ 283 (378)
.|..+|++++....+........ . ...+.. .+|++.+++..+. .+.+|.++.
T Consensus 188 ---~v~iwd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~g~~dg--~i~~wd~~~ 240 (435)
T 4e54_B 188 ---TTRLQDFKGNILRVFASSDTINI--W-FCSLDVSASSRMVVTGDNVG--NVILLNMDG 240 (435)
T ss_dssp ---CEEEEETTSCEEEEEECCSSCSC--C-CCCEEEETTTTEEEEECSSS--BEEEEESSS
T ss_pred ---EEEEeeccCCceeEEeccCCCCc--c-EEEEEECCCCCEEEEEeCCC--cEeeeccCc
Confidence 38889999887766543322211 1 223333 3566666655555 899998865
No 164
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=56.57 E-value=91 Score=26.40 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=41.3
Q ss_pred eEEEEEecCCCCcEEEEEEcC---ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 263 CLYFSCFCDYPEPVDIWIMKE---SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~---~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.+.+.+..+. .+.||.++. .|.... +..... .....-+++.++|..|... ..++.+..|+.
T Consensus 220 ~~las~s~D~--~v~iWd~~~~~~~~~~~~-~~~~~~--~~~v~~~~~s~~g~~las~-----------~~D~~v~lw~~ 283 (297)
T 2pm7_B 220 SYMASVSQDR--TCIIWTQDNEQGPWKKTL-LKEEKF--PDVLWRASWSLSGNVLALS-----------GGDNKVTLWKE 283 (297)
T ss_dssp EEEEEEETTS--CEEEEEESSTTSCCEEEE-SSSSCC--SSCEEEEEECSSSCCEEEE-----------ETTSCEEEEEE
T ss_pred eEEEEEECCC--cEEEEEeCCCCCccceee-eecccC--CCcEEEEEECCCCCEEEEE-----------cCCCcEEEEEE
Confidence 5555555555 999999976 464421 211100 1123346667788877777 36778888887
Q ss_pred C-CCeEEEEE
Q 043816 340 Q-NQRAAGQV 348 (378)
Q Consensus 340 ~-t~~~~~~v 348 (378)
. .+.|+ .+
T Consensus 284 ~~~g~w~-~~ 292 (297)
T 2pm7_B 284 NLEGKWE-PA 292 (297)
T ss_dssp CTTSCEE-EC
T ss_pred CCCCcEE-ec
Confidence 6 45677 44
No 165
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=56.13 E-value=1e+02 Score=26.76 Aligned_cols=195 Identities=12% Similarity=0.028 Sum_probs=96.7
Q ss_pred eecccceEEeecC-CceEEEEcCCC----ccee-ecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEE
Q 043816 105 IDTCNGLIALKNG-ENDIALWNPST----KKHV-LLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEI 178 (378)
Q Consensus 105 ~~s~~Gll~~~~~-~~~~~V~NP~T----~~~~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~ 178 (378)
++..+|.|...+. ...+++.++-+ +... .++.. .....++.+|+.++. +..... ....+
T Consensus 37 ~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-------~~~p~glavd~~~~~--ly~~d~------~~~~I 101 (316)
T 1ijq_A 37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-------IQAPDGLAVDWIHSN--IYWTDS------VLGTV 101 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-------CSCCCEEEEETTTTE--EEEEET------TTTEE
T ss_pred EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC-------CCCcCEEEEeecCCe--EEEEEC------CCCEE
Confidence 3445677766663 46788888876 2222 22211 122356777765543 222211 23467
Q ss_pred EEEEcCCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCee
Q 043816 179 AVYSLKSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLM 255 (378)
Q Consensus 179 ~vyss~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~ 255 (378)
++++.....=+.+. .. ....+ .++.+ +|.+||..... ...|..+|+....-..+-. .... . --
T Consensus 102 ~~~~~~g~~~~~~~-~~--~~~~P-~~iavdp~~g~ly~~d~~~-----~~~I~~~~~dG~~~~~~~~-~~~~---~-P~ 167 (316)
T 1ijq_A 102 SVADTKGVKRKTLF-RE--NGSKP-RAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVT-ENIQ---W-PN 167 (316)
T ss_dssp EEEETTSSSEEEEE-EC--TTCCE-EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEEEC-SSCS---C-EE
T ss_pred EEEeCCCCceEEEE-EC--CCCCc-ceEEeCCCCCEEEEEccCC-----CCeEEEEcCCCCCeEEEEE-CCCC---C-ce
Confidence 77777654333222 10 01111 13333 68999986431 2369999987654443311 1111 1 22
Q ss_pred EEEEe--CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcE
Q 043816 256 YMGNF--SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 256 ~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~ 333 (378)
.|+.. +++||++..... .|....++..-.++. +... ... ..|.++.-+++.|++.. ....+
T Consensus 168 gla~d~~~~~lY~~D~~~~--~I~~~d~dg~~~~~~-~~~~--~~~--~~P~giav~~~~ly~~d----------~~~~~ 230 (316)
T 1ijq_A 168 GITLDLLSGRLYWVDSKLH--SISSIDVNGGNRKTI-LEDE--KRL--AHPFSLAVFEDKVFWTD----------IINEA 230 (316)
T ss_dssp EEEEETTTTEEEEEETTTT--EEEEEETTSCSCEEE-EECT--TTT--SSEEEEEEETTEEEEEE----------TTTTE
T ss_pred EEEEeccCCEEEEEECCCC--eEEEEecCCCceEEE-eecC--Ccc--CCcEEEEEECCEEEEEE----------CCCCe
Confidence 34443 678888876544 666655544111111 1110 011 23444443456777774 35689
Q ss_pred EEEEECCCCeEE
Q 043816 334 LDWYDLQNQRAA 345 (378)
Q Consensus 334 l~~yd~~t~~~~ 345 (378)
+..+|..+++..
T Consensus 231 V~~~~~~~g~~~ 242 (316)
T 1ijq_A 231 IFSANRLTGSDV 242 (316)
T ss_dssp EEEEETTTCCCC
T ss_pred EEEEeCCCCcce
Confidence 999999766544
No 166
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=55.91 E-value=1.5e+02 Score=28.54 Aligned_cols=201 Identities=10% Similarity=-0.021 Sum_probs=104.2
Q ss_pred cceEEeec-CCceEEEEcCCCcceee-cCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 109 NGLIALKN-GENDIALWNPSTKKHVL-LPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
++++.+.. ..+.+.|.|+.|++... +|... ...++.++|+++ |-.+. . ....+.+|+..+.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--------~p~~v~~SpDGr-~lyv~-~-------~dg~V~viD~~~~ 228 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--------AVHISRLSASGR-YLFVI-G-------RDGKVNMIDLWMK 228 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS--------CEEEEEECTTSC-EEEEE-E-------TTSEEEEEETTSS
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--------CccceEECCCCC-EEEEE-c-------CCCeEEEEECCCC
Confidence 34555544 46789999999988764 54322 223566676544 33332 1 1346888888522
Q ss_pred ceEEeeccCCccccCCCCceEE-----CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCC------CCCCe
Q 043816 187 SSRRIRVDFPYYFSHPRDGTFA-----RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENR------DSGNL 254 (378)
Q Consensus 187 ~W~~~~~~~p~~~~~~~~~v~~-----~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~------~~~~~ 254 (378)
+-+.+. .++... ......+. +|..-+.+.... ..+.++|..+.+- ..++....... +.. -
T Consensus 229 t~~~v~-~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~-----~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r-v 300 (567)
T 1qks_A 229 EPTTVA-EIKIGS-EARSIETSKMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR-V 300 (567)
T ss_dssp SCCEEE-EEECCS-EEEEEEECCSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCC-E
T ss_pred CCcEeE-EEecCC-CCceeEEccccCCCCCEEEEEEccC-----CeEEEEECCCCcEEEEEeccccccccccccCCCc-e
Confidence 223332 222111 01111222 575444443332 3488999876443 34444321100 011 2
Q ss_pred eEEEEeC-CeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCc
Q 043816 255 MYMGNFS-GCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332 (378)
Q Consensus 255 ~~l~~~~-G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 332 (378)
..+.... +...++...+. ..+.++...+ ...++..|+.. ...+.+++.++|..++... ..++
T Consensus 301 a~i~~s~~~~~~vv~~~~~-g~v~~vd~~~~~~~~v~~i~~~-----~~~~d~~~~pdgr~~~va~----------~~sn 364 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKET-GKILLVDYTDLNNLKTTEISAE-----RFLHDGGLDGSHRYFITAA----------NARN 364 (567)
T ss_dssp EEEEECSSSSEEEEEETTT-TEEEEEETTCSSEEEEEEEECC-----SSEEEEEECTTSCEEEEEE----------GGGT
T ss_pred EEEEEcCCCCEEEEEecCC-CeEEEEecCCCccceeeeeecc-----ccccCceECCCCCEEEEEe----------CCCC
Confidence 2233332 34444444332 2555554444 45555556541 2234567778888888874 3578
Q ss_pred EEEEEECCCCeEEEEEEE
Q 043816 333 ELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 333 ~l~~yd~~t~~~~~~v~~ 350 (378)
.+.++|.+++++...+.+
T Consensus 365 ~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 365 KLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCcEEEEEec
Confidence 899999999998734434
No 167
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=55.38 E-value=1.1e+02 Score=26.98 Aligned_cols=200 Identities=10% Similarity=0.076 Sum_probs=94.9
Q ss_pred ceEEeecCCceEEEEcCCC-----cceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 110 GLIALKNGENDIALWNPST-----KKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T-----~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
.+|+....+..+.|||..+ +....+... ......+.+.+..+.+-+.+- ....+.+|+..
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~--------~dg~v~iwd~~ 144 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANNAINSMARFSNH-------SSSVKTVKFNAKQDNVLASGG--------NNGEIFIWDMN 144 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTSCCCEEEECCCS-------SSCCCEEEECSSSTTBEEEEC--------SSSCEEBCBTT
T ss_pred CeEEEEccCCeEEEeecccccccccchhhccCC-------ccceEEEEEcCCCCCEEEEEc--------CCCeEEEEECC
Confidence 3454444567899999887 233333322 233445666665444333321 23457777777
Q ss_pred CCc-----eEEeeccCCccccCCCCceEEC---CeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCee
Q 043816 185 SNS-----SRRIRVDFPYYFSHPRDGTFAR---GHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLM 255 (378)
Q Consensus 185 t~~-----W~~~~~~~p~~~~~~~~~v~~~---G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~ 255 (378)
++. +..............-.++.++ +.+...+..+ ..|..+|+.+.+.. .+..+.....+...-.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS------SCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEEEEECCCCCcceEEeccccccccCCceE
Confidence 654 0000000000001111134433 3333332222 24999999876543 3444422110011022
Q ss_pred EEEEe-CC-eEEEEEecCC-CCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEee-cCCEEEEeeccCCCccccccC
Q 043816 256 YMGNF-SG-CLYFSCFCDY-PEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSK-SGDKVLVDKFLYDEDEDEGIN 330 (378)
Q Consensus 256 ~l~~~-~G-~L~l~~~~~~-~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~-~g~~vl~~~~~~~~~~~~~~~ 330 (378)
.+... +| .+.+++..+. ...+.+|.++. . .....+.. +......-+.+.+ ++..++.. ..
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~-----------~~ 283 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQ---GHQKGILSLDWCHQDEHLLLSS-----------GR 283 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCS---CCSSCEEEEEECSSCSSCEEEE-----------ES
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeec---CccCceeEEEeCCCCCCeEEEE-----------eC
Confidence 33333 34 4555544332 23789998876 2 11111210 0011233355555 67777777 46
Q ss_pred CcEEEEEECCCCeEE
Q 043816 331 KWELDWYDLQNQRAA 345 (378)
Q Consensus 331 ~~~l~~yd~~t~~~~ 345 (378)
++.+.+||+++++..
T Consensus 284 dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 284 DNTVLLWNPESAEQL 298 (416)
T ss_dssp SSEEEEECSSSCCEE
T ss_pred CCCEEEeeCCCCccc
Confidence 789999999988765
No 168
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=55.37 E-value=24 Score=26.35 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=29.0
Q ss_pred ceEEEEcCCCc-ceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEE
Q 043816 119 NDIALWNPSTK-KHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLI 166 (378)
Q Consensus 119 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~ 166 (378)
-.+++.||.|+ .|...-.. ...+.+-+|+..+.|+|+.+.
T Consensus 11 A~V~~~D~~tk~~W~p~g~~--------~~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTSKH--------AVTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEECTTTSCSEEESCSS--------CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCCceEeCCCC--------ceEEEEEEcCCCCEEEEEEcc
Confidence 36899999996 98643221 245667778888889999864
No 169
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=54.51 E-value=1.1e+02 Score=26.77 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=39.3
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecC--ccccceeeEEEEEeecCCEEEEeeccCCCccccccCC---cEE
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGG--VFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK---WEL 334 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~--~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~---~~l 334 (378)
+| +.+++..+. .+.+|.+.. .- +..+... .........-+.+.++|..++.. ..+ +.+
T Consensus 197 ~~-~l~~~~~dg--~i~i~d~~~~~~--~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~-----------~~d~~~g~i 260 (397)
T 1sq9_A 197 RG-LIATGFNNG--TVQISELSTLRP--LYNFESQHSMINNSNSIRSVKFSPQGSLLAIA-----------HDSNSFGCI 260 (397)
T ss_dssp TS-EEEEECTTS--EEEEEETTTTEE--EEEEECCC---CCCCCEEEEEECSSTTEEEEE-----------EEETTEEEE
T ss_pred Cc-eEEEEeCCC--cEEEEECCCCce--eEEEeccccccccCCccceEEECCCCCEEEEE-----------ecCCCCceE
Confidence 45 444444444 899999876 22 2222210 00001123345667788877777 355 789
Q ss_pred EEEECCCCeEE
Q 043816 335 DWYDLQNQRAA 345 (378)
Q Consensus 335 ~~yd~~t~~~~ 345 (378)
..||+++++..
T Consensus 261 ~i~d~~~~~~~ 271 (397)
T 1sq9_A 261 TLYETEFGERI 271 (397)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCccc
Confidence 99999887765
No 170
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=54.50 E-value=6.2 Score=23.64 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhcCC
Q 043816 2 ERLPRDLNMNILSRLS 17 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLp 17 (378)
..||.|+.+|||+--.
T Consensus 22 ~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 22 KQLPADIQEEILSGKS 37 (48)
T ss_dssp TTSCHHHHHHHTTCCC
T ss_pred HHCcHHHHHHHHhcch
Confidence 5789999999987654
No 171
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=53.85 E-value=1.4e+02 Score=27.83 Aligned_cols=179 Identities=9% Similarity=0.123 Sum_probs=90.4
Q ss_pred CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCC
Q 043816 117 GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFP 196 (378)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 196 (378)
.+..+.+||..+++...++... .....+.+.|... +-+. .. ....+.+|+.....-.... ...
T Consensus 323 ~d~~i~~w~~~~~~~~~~~~~~-------~~v~~~~~s~~g~-~l~~-~~-------~dg~v~~~~~~~~~~~~~~-~~~ 385 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQTLTGHS-------SSVWGVAFSPDGQ-TIAS-AS-------DDKTVKLWNRNGQLLQTLT-GHS 385 (577)
T ss_dssp TTSCEEEEETTSCEEEEECCCS-------SCEEEEEECTTSS-EEEE-EE-------TTSEEEEEETTCCEEEEEE-CCS
T ss_pred CCCeEEEEeCCCCeeEEEeCCC-------CCEEEEEECCCCC-EEEE-Ee-------CCCEEEEEcCCCCEEEEec-CCC
Confidence 4556888887776666554332 2344555665432 2222 11 2345667775433322222 100
Q ss_pred ccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCC
Q 043816 197 YYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYP 273 (378)
Q Consensus 197 ~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~ 273 (378)
. .-.++.+ +|..-..+..+ ..|..+|...+....+...... -..+... +|++.+....+.
T Consensus 386 ~----~v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~~~~~~~~~~~~------v~~~~~s~d~~~l~~~~~d~- 448 (577)
T 2ymu_A 386 S----SVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLTGHSSS------VWGVAFSPDDQTIASASDDK- 448 (577)
T ss_dssp S----CEEEEEECTTSSCEEEEETT------SEEEEECTTCCEEEEEECCSSC------EEEEEECTTSSEEEEEETTS-
T ss_pred C----CeEEEEECCCCCEEEEEeCC------CEEEEEeCCCCEEEEecCCCCC------eEEEEECCCCCEEEEEcCCC-
Confidence 0 0012222 34432222221 2477788766555444332211 2223333 566655555555
Q ss_pred CcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 274 EPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 274 ~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
.+.+|.+.. ..+..+... .....-+++.++|..|... ..++.+..||...+..+ .+
T Consensus 449 -~v~~w~~~~--~~~~~~~~~----~~~v~~~~~spd~~~las~-----------~~d~~i~iw~~~~~~~~-~~ 504 (577)
T 2ymu_A 449 -TVKLWNRNG--QLLQTLTGH----SSSVRGVAFSPDGQTIASA-----------SDDKTVKLWNRNGQLLQ-TL 504 (577)
T ss_dssp -EEEEEETTS--CEEEEEECC----SSCEEEEEECTTSCEEEEE-----------ETTSEEEEEETTSCEEE-EE
T ss_pred -EEEEEECCC--CEEEEEcCC----CCCEEEEEEcCCCCEEEEE-----------eCCCEEEEEcCCCCEEE-EE
Confidence 899998755 222333321 1123346677888877777 46788999998776666 54
No 172
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=52.79 E-value=1.7e+02 Score=28.42 Aligned_cols=184 Identities=12% Similarity=0.132 Sum_probs=87.6
Q ss_pred CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCC
Q 043816 117 GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFP 196 (378)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 196 (378)
.+..+.|||..++....+......+ ...+..+.+.+.+..-.++... ....+.+++..++.-...- .
T Consensus 492 ~D~~i~iwd~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s-------~d~~v~vwd~~~~~~~~~~---~ 558 (694)
T 3dm0_A 492 RDRTIKLWNTLGECKYTISEGGEGH---RDWVSCVRFSPNTLQPTIVSAS-------WDKTVKVWNLSNCKLRSTL---A 558 (694)
T ss_dssp TTSCEEEECTTSCEEEEECSSTTSC---SSCEEEEEECSCSSSCEEEEEE-------TTSCEEEEETTTCCEEEEE---C
T ss_pred CCCEEEEEECCCCcceeeccCCCCC---CCcEEEEEEeCCCCcceEEEEe-------CCCeEEEEECCCCcEEEEE---c
Confidence 3556888887655444443322111 2344556666654332333322 2446788888775432211 0
Q ss_pred ccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCC
Q 043816 197 YYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPE 274 (378)
Q Consensus 197 ~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~ 274 (378)
. ....-.++.+ +|.+...+..+ ..|..+|+.+.+-.. .+.... . -..+....+...++...+.
T Consensus 559 ~-h~~~v~~v~~spdg~~l~sg~~D------g~i~iwd~~~~~~~~-~~~~~~----~-v~~~~~sp~~~~l~~~~~~-- 623 (694)
T 3dm0_A 559 G-HTGYVSTVAVSPDGSLCASGGKD------GVVLLWDLAEGKKLY-SLEANS----V-IHALCFSPNRYWLCAATEH-- 623 (694)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETT------SBCEEEETTTTEEEE-CCBCSS----C-EEEEEECSSSSEEEEEETT--
T ss_pred C-CCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceEE-EecCCC----c-EEEEEEcCCCcEEEEEcCC--
Confidence 0 0000012222 45543333322 248889987765321 111111 1 2334444444444444444
Q ss_pred cEEEEEEcCceeeeEEEecCc---------cc------cceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 275 PVDIWIMKESWTKVFSFAGGV---------FG------IFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 275 ~i~iW~l~~~W~~~~~i~~~~---------~~------~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.+.||.++. ...+..+.... .+ .......+..+++|..|+.. ..++.+.+||+
T Consensus 624 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg-----------s~Dg~i~iW~i 691 (694)
T 3dm0_A 624 GIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG-----------YTDGVIRVWGI 691 (694)
T ss_dssp EEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE-----------ETTSEEEEEEC
T ss_pred CEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE-----------cCCCeEEEEec
Confidence 799999876 11112222100 00 00112345667888888877 47889999987
Q ss_pred C
Q 043816 340 Q 340 (378)
Q Consensus 340 ~ 340 (378)
.
T Consensus 692 ~ 692 (694)
T 3dm0_A 692 G 692 (694)
T ss_dssp -
T ss_pred c
Confidence 5
No 173
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=52.15 E-value=1.2e+02 Score=26.64 Aligned_cols=164 Identities=11% Similarity=0.019 Sum_probs=69.7
Q ss_pred ccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 108 CNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
-+|-+++....+.+.+++..+++.......... ......+.+.|.+. + ++.... . ......+..++.....
T Consensus 186 pdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~v~fspdg~-~-l~~~s~-d--~~~~~~i~~~~~~~~~ 256 (365)
T 4h5i_A 186 TDGKVVAYITGSSLEVISTVTGSCIARKTDFDK----NWSLSKINFIADDT-V-LIAASL-K--KGKGIVLTKISIKSGN 256 (365)
T ss_dssp TTSSEEEEECSSCEEEEETTTCCEEEEECCCCT----TEEEEEEEEEETTE-E-EEEEEE-S--SSCCEEEEEEEEETTE
T ss_pred cCCceEEeccceeEEEEEeccCcceeeeecCCC----CCCEEEEEEcCCCC-E-EEEEec-C--CcceeEEeecccccce
Confidence 355555444455677777777776543222111 23344455555432 2 222211 1 1122345555555554
Q ss_pred eEEeeccCCcccc-CCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCe
Q 043816 188 SRRIRVDFPYYFS-HPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGC 263 (378)
Q Consensus 188 W~~~~~~~p~~~~-~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~ 263 (378)
+.... ....... ..-.++.+ +|.+-..+..+ ..|..+|+.+.+.-...+. .. ...-..+... +|+
T Consensus 257 ~~~~~-~~~~~~~~~~V~~~~~Spdg~~lasgs~D------~~V~iwd~~~~~~~~~~~~--gH--~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 257 TSVLR-SKQVTNRFKGITSMDVDMKGELAVLASND------NSIALVKLKDLSMSKIFKQ--AH--SFAITEVTISPDST 325 (365)
T ss_dssp EEEEE-EEEEESSCSCEEEEEECTTSCEEEEEETT------SCEEEEETTTTEEEEEETT--SS--SSCEEEEEECTTSC
T ss_pred eccee-eeeecCCCCCeEeEEECCCCCceEEEcCC------CEEEEEECCCCcEEEEecC--cc--cCCEEEEEECCCCC
Confidence 43332 0000000 00012222 56654444333 2388999987654221111 11 1102234333 677
Q ss_pred EEEEEecCCCCcEEEEEEcC-------ceeeeEEEec
Q 043816 264 LYFSCFCDYPEPVDIWIMKE-------SWTKVFSFAG 293 (378)
Q Consensus 264 L~l~~~~~~~~~i~iW~l~~-------~W~~~~~i~~ 293 (378)
+.+.+..+. ++.||.+.. -|.++.++..
T Consensus 326 ~laS~S~D~--tvrvw~ip~~~~~~~s~~~~l~kl~~ 360 (365)
T 4h5i_A 326 YVASVSAAN--TIHIIKLPLNYANYTSMKQKISKLEH 360 (365)
T ss_dssp EEEEEETTS--EEEEEECCTTTTC-------------
T ss_pred EEEEEeCCC--eEEEEEcCCCCcCccCccccceeeec
Confidence 766666666 999999964 4666666654
No 174
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=51.32 E-value=1e+02 Score=25.53 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=82.3
Q ss_pred eeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCC
Q 043816 147 LVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGY 223 (378)
Q Consensus 147 ~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~ 223 (378)
...++.+|+.++. +..... ....+.+|+..+..-+.+. +...... .++.+ +|.+||.....
T Consensus 37 ~~~gi~~d~~~~~--ly~~d~------~~~~I~~~~~~g~~~~~~~---~~~~~~p-~~ia~d~~~~~lyv~d~~~---- 100 (267)
T 1npe_A 37 VIIGLAFDCVDKV--VYWTDI------SEPSIGRASLHGGEPTTII---RQDLGSP-EGIALDHLGRTIFWTDSQL---- 100 (267)
T ss_dssp EEEEEEEETTTTE--EEEEET------TTTEEEEEESSSCCCEEEE---CTTCCCE-EEEEEETTTTEEEEEETTT----
T ss_pred cEEEEEEecCCCE--EEEEEC------CCCEEEEEecCCCCcEEEE---ECCCCCc-cEEEEEecCCeEEEEECCC----
Confidence 3456777775553 222221 2346777777654322221 1111111 24444 57899876432
Q ss_pred CCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe--CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCcccccee
Q 043816 224 NGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF--SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTY 301 (378)
Q Consensus 224 ~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~ 301 (378)
..|.++|+....-..+ .+.... . -..++.. +|.|+++........|....++..-.+ .+... ....
T Consensus 101 --~~I~~~~~~g~~~~~~-~~~~~~---~-P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~--~~~~~---~~~~ 168 (267)
T 1npe_A 101 --DRIEVAKMDGTQRRVL-FDTGLV---N-PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR--ILAQD---NLGL 168 (267)
T ss_dssp --TEEEEEETTSCSCEEE-ECSSCS---S-EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE--EEECT---TCSC
T ss_pred --CEEEEEEcCCCCEEEE-EECCCC---C-ccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE--EEEEC---CCCC
Confidence 3599999876543333 122211 1 2233333 578888765422225555555442111 11110 1223
Q ss_pred eEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 302 AKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 302 ~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
..-+++..+++.|++.. .....+..+|+++...+
T Consensus 169 P~gia~d~~~~~lyv~d----------~~~~~I~~~~~~g~~~~ 202 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVD----------AGTHRAECLNPAQPGRR 202 (267)
T ss_dssp EEEEEEETTTTEEEEEE----------TTTTEEEEEETTEEEEE
T ss_pred CcEEEEcCCCCEEEEEE----------CCCCEEEEEecCCCceE
Confidence 34466666778888884 35678999999887665
No 175
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=50.25 E-value=1.2e+02 Score=25.79 Aligned_cols=189 Identities=10% Similarity=0.069 Sum_probs=95.2
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
+.+|+....+..+.|||..|++...--... ......+.+.|... + ++... ....+.+++.+++.
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~-~-l~sgs-------~D~~v~lWd~~~~~- 130 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDYIRSIAVHPTKP-Y-VLSGS-------DDLTVKLWNWENNW- 130 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSS-E-EEEEE-------TTSCEEEEEGGGTT-
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEeCC------CCcEEEEEEcCCCC-E-EEEEC-------CCCeEEEEECCCCc-
Confidence 334444445778999999998765321111 23455566666543 2 22221 23467777776541
Q ss_pred EEeeccCCccccCCCCceEEC---CeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeE-EEE--e-
Q 043816 189 RRIRVDFPYYFSHPRDGTFAR---GHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMY-MGN--F- 260 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~~---G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~-l~~--~- 260 (378)
.... .+.. ....-.++.++ |.+ ......+ ..|..+|+.+..-.. +..... . ... +.. .
T Consensus 131 ~~~~-~~~~-h~~~v~~v~~~p~~~~~-l~sgs~D-----~~v~iwd~~~~~~~~~~~~~~~-----~-~v~~~~~~~~~ 196 (304)
T 2ynn_A 131 ALEQ-TFEG-HEHFVMCVAFNPKDPST-FASGCLD-----RTVKVWSLGQSTPNFTLTTGQE-----R-GVNYVDYYPLP 196 (304)
T ss_dssp EEEE-EECC-CCSCEEEEEECTTCTTE-EEEEETT-----SEEEEEETTCSSCSEEEECCCT-----T-CEEEEEECCST
T ss_pred chhh-hhcc-cCCcEEEEEECCCCCCE-EEEEeCC-----CeEEEEECCCCCccceeccCCc-----C-cEEEEEEEEcC
Confidence 1111 0000 00000133332 232 2233222 248888886543211 111110 1 122 211 1
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
++.+.+.+..+. .+.||.++. ...+..+... .....-+.+++++..|+.. ..++.+..||.+
T Consensus 197 ~~~~l~s~s~D~--~i~iWd~~~-~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~-----------s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 197 DKPYMITASDDL--TIKIWDYQT-KSCVATLEGH----MSNVSFAVFHPTLPIIISG-----------SEDGTLKIWNSS 258 (304)
T ss_dssp TCCEEEEEETTS--EEEEEETTT-TEEEEEEECC----SSCEEEEEECSSSSEEEEE-----------ETTSCEEEEETT
T ss_pred CCCEEEEEcCCC--eEEEEeCCC-CccceeeCCC----CCCEEEEEECCCCCEEEEE-----------cCCCeEEEEECC
Confidence 455555555555 999998876 1223333321 1123346667788877777 478899999999
Q ss_pred CCeEE
Q 043816 341 NQRAA 345 (378)
Q Consensus 341 t~~~~ 345 (378)
+.+..
T Consensus 259 ~~~~~ 263 (304)
T 2ynn_A 259 TYKVE 263 (304)
T ss_dssp TCCEE
T ss_pred CCcee
Confidence 98877
No 176
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=50.15 E-value=2.2e+02 Score=28.98 Aligned_cols=191 Identities=9% Similarity=0.029 Sum_probs=95.8
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|.....+..+.|||..+++.....+. ...+..+.|.+ ++ .++... ....+.+++..++.-..
T Consensus 31 ~lAsgs~Dg~I~lw~~~~~~~~~~~~~-------~~~V~~l~fsp--g~-~L~S~s-------~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 31 LLAIATVTGEVHIYGQQQVEVVIKLED-------RSAIKEMRFVK--GI-YLVVIN-------AKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp EEEEEETTSEEEEECSTTCEEEEECSS-------CCCEEEEEEET--TT-EEEEEE-------TTCEEEEEETTTCSEEE
T ss_pred EEEEEeCCCEEEEEeCCCcEEEEEcCC-------CCCEEEEEEcC--CC-EEEEEE-------CcCeEEEEECCCCcEEE
Confidence 333333456788888877765543221 23456677777 44 333333 24578888887764221
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCC------CCCCCCCCeeEEEEe--
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPH------LENRDSGNLMYMGNF-- 260 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~------~~~~~~~~~~~l~~~-- 260 (378)
.- ..+. .-.++.+ +|..-..+ ..+ ..|..+|+.+........|. ....+.+.-..+...
T Consensus 94 ~~-~~~~----~V~~v~~sp~g~~l~sg-s~d-----g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 94 TV-FVPG----KITSIDTDASLDWMLIG-LQN-----GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EE-ECSS----CEEEEECCTTCSEEEEE-ETT-----SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EE-cCCC----CEEEEEECCCCCEEEEE-cCC-----CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 11 0010 0012222 23322222 222 23888999887654322211 001011102233333
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecC-----cc--------cc-ceeeEEEEEeecCCEEEEeeccCCCcc
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGG-----VF--------GI-FTYAKALAYSKSGDKVLVDKFLYDEDE 325 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~-----~~--------~~-~~~~~~~~~~~~g~~vl~~~~~~~~~~ 325 (378)
++.+.+++..+. .+ +|.++. .-. ..+... .. .. .....-+++.++|..+...
T Consensus 163 ~~~~l~~g~~dg--~v-lWd~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg-------- 229 (902)
T 2oaj_A 163 DIGTVLISYEYV--TL-TYSLVENEIK--QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI-------- 229 (902)
T ss_dssp EEEEEEEECSSC--EE-EEETTTTEEE--EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE--------
T ss_pred CCCEEEEEeCCC--cE-EEECCCCceE--EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE--------
Confidence 234555554444 88 999877 222 222211 00 00 1224446677888887777
Q ss_pred ccccCCcEEEEEECCCCeEE
Q 043816 326 DEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 326 ~~~~~~~~l~~yd~~t~~~~ 345 (378)
..++.+.+||+++++..
T Consensus 230 ---s~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 230 ---HEDNSLVFWDANSGHMI 246 (902)
T ss_dssp ---ETTCCEEEEETTTCCEE
T ss_pred ---ECCCeEEEEECCCCcEE
Confidence 47889999999987665
No 177
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=49.78 E-value=1.2e+02 Score=25.89 Aligned_cols=204 Identities=11% Similarity=0.055 Sum_probs=92.2
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC----
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN---- 186 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~---- 186 (378)
+|+....+..+.|||..+++....-.. ......+.+.+.+. +-++.... . ......+.+|+..++
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~-~l~~~~~~-~--~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWKS-------PVPVKRVEFSPCGN-YFLAILDN-V--MKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEEC-------SSCEEEEEECTTSS-EEEEEECC-B--TTBCCEEEEEEEEECTTTC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeec-------CCCeEEEEEccCCC-EEEEecCC-c--cCCCCEEEEEEecCCccce
Confidence 444444567899999988877654332 22345566666433 33222211 0 011246667766543
Q ss_pred ceEEeeccCCcccc-C----CCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCC-ce-EeeecCCCCCCCCCCCeeEE
Q 043816 187 SSRRIRVDFPYYFS-H----PRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKS-EE-FFEVPLPHLENRDSGNLMYM 257 (378)
Q Consensus 187 ~W~~~~~~~p~~~~-~----~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~-~~-~~~i~~P~~~~~~~~~~~~l 257 (378)
.+............ . .-.++.+ +|.....+..+ ..|..+|+.+ .. ...+...... -..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~------v~~~ 224 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYVDSIDLHEKS------ISDM 224 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEEEEEECCSSC------EEEE
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeEEEEecCCCc------eeEE
Confidence 12222100000000 0 0012222 34443333322 3599999987 33 3334332111 2223
Q ss_pred EEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCC---ccccccCCcE
Q 043816 258 GNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDE---DEDEGINKWE 333 (378)
Q Consensus 258 ~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~---~~~~~~~~~~ 333 (378)
... +|++.++...+. .+.+|.++. ......+.. ......+.+.++|..++........ .-........
T Consensus 225 ~~~~~~~~l~~~~~d~--~i~v~d~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 296 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDT--NSFLVDVST-LQVLKKYET-----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE 296 (369)
T ss_dssp EECTTSSEEEEEETTS--EEEEEETTT-CCEEEEEEC-----SSCEEEEEECSSSSEEEEEECCC-------------CE
T ss_pred EECCCCCEEEEecCCc--eEEEEECCC-CceeeeecC-----CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce
Confidence 322 566666665555 899998876 112222222 1112234555666666655200000 0000001127
Q ss_pred EEEEECCCCeEE
Q 043816 334 LDWYDLQNQRAA 345 (378)
Q Consensus 334 l~~yd~~t~~~~ 345 (378)
+..||.++++..
T Consensus 297 i~~~d~~~~~~~ 308 (369)
T 3zwl_B 297 ARFYHKIFEEEI 308 (369)
T ss_dssp EEEEETTTCCEE
T ss_pred eEEEecCCCcch
Confidence 889999888766
No 178
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=49.75 E-value=1.3e+02 Score=26.20 Aligned_cols=191 Identities=12% Similarity=-0.008 Sum_probs=93.8
Q ss_pred ccceEEeec-CCceEEEEcCCCccee-ecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 108 CNGLIALKN-GENDIALWNPSTKKHV-LLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
.+|.|...+ ....+..+++-++... .+.... .....++.+|+.++. +.... .....+++++...
T Consensus 45 ~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~------l~~p~glavd~~~g~--ly~~d------~~~~~I~~~~~dG 110 (318)
T 3sov_A 45 SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG------LLSPDGLACDWLGEK--LYWTD------SETNRIEVSNLDG 110 (318)
T ss_dssp GGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC------CSCCCEEEEETTTTE--EEEEE------TTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCcEEEEEccCCCceEEEEcCC------CCCccEEEEEcCCCe--EEEEE------CCCCEEEEEECCC
Confidence 345555554 2345666666655211 111110 123346777765543 22221 1234677777765
Q ss_pred CceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe--
Q 043816 186 NSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-- 260 (378)
Q Consensus 186 ~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-- 260 (378)
..=+.+. . .....+ .++.+ +|.+||..... ...|..+|+....-..+- ..... . ---|+..
T Consensus 111 ~~~~~l~-~--~~~~~P-~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~-~~~l~---~-Pnglavd~~ 176 (318)
T 3sov_A 111 SLRKVLF-W--QELDQP-RAIALDPSSGFMYWTDWGE-----VPKIERAGMDGSSRFIII-NSEIY---W-PNGLTLDYE 176 (318)
T ss_dssp CSCEEEE-C--SSCSSE-EEEEEEGGGTEEEEEECSS-----SCEEEEEETTSCSCEEEE-CSSCS---C-EEEEEEETT
T ss_pred CcEEEEE-e--CCCCCc-cEEEEeCCCCEEEEEecCC-----CCEEEEEEcCCCCeEEEE-ECCCC---C-ccEEEEecc
Confidence 4322222 1 001111 14444 58999975331 236999999764333321 11111 1 2224443
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
+|+||++..... .|....++..-. ..+-. .....|.++.-.++.+++.. .....+..+|..
T Consensus 177 ~~~lY~aD~~~~--~I~~~d~dG~~~--~~~~~-----~~~~~P~glav~~~~lywtd----------~~~~~V~~~~~~ 237 (318)
T 3sov_A 177 EQKLYWADAKLN--FIHKSNLDGTNR--QAVVK-----GSLPHPFALTLFEDILYWTD----------WSTHSILACNKY 237 (318)
T ss_dssp TTEEEEEETTTT--EEEEEETTSCSC--EEEEC-----SCCSCEEEEEEETTEEEEEE----------TTTTEEEEEETT
T ss_pred CCEEEEEECCCC--EEEEEcCCCCce--EEEec-----CCCCCceEEEEeCCEEEEEe----------cCCCeEEEEECC
Confidence 678888876544 565555544111 11111 01234555554566777774 466899999997
Q ss_pred CCeEE
Q 043816 341 NQRAA 345 (378)
Q Consensus 341 t~~~~ 345 (378)
+++..
T Consensus 238 ~G~~~ 242 (318)
T 3sov_A 238 TGEGL 242 (318)
T ss_dssp TCCSC
T ss_pred CCCce
Confidence 66544
No 179
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=49.10 E-value=1.4e+02 Score=26.44 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=52.3
Q ss_pred EEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe--CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecC--c-cccce
Q 043816 227 LIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF--SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGG--V-FGIFT 300 (378)
Q Consensus 227 ~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~--~-~~~~~ 300 (378)
.|..+|+.+.+... +.... . -..+... +|++.+++..+. .+.+|.++.. ..+.++... . .+...
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~------~-v~~~~~~~~~~~~l~~~s~d~--~v~iwd~~~~-~~~~~~~~~~~~~~~h~~ 257 (393)
T 1erj_A 188 TVRIWDLRTGQCSLTLSIED------G-VTTVAVSPGDGKYIAAGSLDR--AVRVWDSETG-FLVERLDSENESGTGHKD 257 (393)
T ss_dssp EEEEEETTTTEEEEEEECSS------C-EEEEEECSTTCCEEEEEETTS--CEEEEETTTC-CEEEEEC------CCCSS
T ss_pred cEEEEECCCCeeEEEEEcCC------C-cEEEEEECCCCCEEEEEcCCC--cEEEEECCCC-cEEEeecccccCCCCCCC
Confidence 48889998766533 22211 1 2233332 577777766666 8999988661 112223210 0 11112
Q ss_pred eeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCe
Q 043816 301 YAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQR 343 (378)
Q Consensus 301 ~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~ 343 (378)
...-+++.++|..|+.. ..++.+..||+++..
T Consensus 258 ~v~~v~~~~~g~~l~s~-----------s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSG-----------SLDRSVKLWNLQNAN 289 (393)
T ss_dssp CEEEEEECTTSSEEEEE-----------ETTSEEEEEEC----
T ss_pred CEEEEEECCCCCEEEEE-----------eCCCEEEEEECCCCC
Confidence 23446667788877777 477899999987643
No 180
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=48.91 E-value=37 Score=24.86 Aligned_cols=42 Identities=12% Similarity=0.001 Sum_probs=29.6
Q ss_pred ceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEE
Q 043816 119 NDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLI 166 (378)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~ 166 (378)
..+++.+|.|++|...-... ......+..|...+.|+|+...
T Consensus 11 A~V~~~d~~~~~W~p~~~~~------g~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 11 AAVMVYDDANKKWVPAGGST------GFSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEEETTTTEEEEGGGCC------SCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCceEECCCCC------CceEEEEEEECCCCEEEEEEEE
Confidence 35889999999775433111 2345678888888889999875
No 181
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=48.84 E-value=1.4e+02 Score=26.15 Aligned_cols=158 Identities=7% Similarity=-0.046 Sum_probs=83.3
Q ss_pred ceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCC
Q 043816 146 DLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEG 222 (378)
Q Consensus 146 ~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~ 222 (378)
.....+.+.+....+-+.+- ....+.+|+..++.....- .... ....-.++.+ +|.+... ...+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~-~~~~-h~~~v~~~~~~~~~~~~l~s-~~~d-- 140 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGS--------KGGDIILWDYDVQNKTSFI-QGMG-PGDAITGMKFNQFNTNQLFV-SSIR-- 140 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEE--------BTSCEEEEETTSTTCEEEE-CCCS-TTCBEEEEEEETTEEEEEEE-EETT--
T ss_pred CCEEEEEECCCCCCEEEEEc--------CCCeEEEEeCCCcccceee-ecCC-cCCceeEEEeCCCCCCEEEE-EeCC--
Confidence 34555666665534433332 2346888888887665443 1100 0000013333 2333333 3322
Q ss_pred CCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCcccccee
Q 043816 223 YNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTY 301 (378)
Q Consensus 223 ~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~ 301 (378)
..|..+|+.++....+........ . -..+.. .+|+..+++..+. .+.+|.++. ..+..+... ...
T Consensus 141 ---~~i~iwd~~~~~~~~~~~~~~~~~--~-v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~--~~~~~~~~h----~~~ 206 (383)
T 3ei3_B 141 ---GATTLRDFSGSVIQVFAKTDSWDY--W-YCCVDVSVSRQMLATGDSTG--RLLLLGLDG--HEIFKEKLH----KAK 206 (383)
T ss_dssp ---TEEEEEETTSCEEEEEECCCCSSC--C-EEEEEEETTTTEEEEEETTS--EEEEEETTS--CEEEEEECS----SSC
T ss_pred ---CEEEEEECCCCceEEEeccCCCCC--C-eEEEEECCCCCEEEEECCCC--CEEEEECCC--CEEEEeccC----CCc
Confidence 358999999877766654432211 1 223332 3566666666555 999999855 223333320 112
Q ss_pred eEEEEEeecCC-EEEEeeccCCCccccccCCcEEEEEECCC
Q 043816 302 AKALAYSKSGD-KVLVDKFLYDEDEDEGINKWELDWYDLQN 341 (378)
Q Consensus 302 ~~~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~l~~yd~~t 341 (378)
..-+.+.+++. .++.. ..++.+.+||+++
T Consensus 207 v~~~~~~~~~~~~l~s~-----------~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 207 VTHAEFNPRCDWLMATS-----------SVDATVKLWDLRN 236 (383)
T ss_dssp EEEEEECSSCTTEEEEE-----------ETTSEEEEEEGGG
T ss_pred EEEEEECCCCCCEEEEE-----------eCCCEEEEEeCCC
Confidence 33456667777 66666 3677888998887
No 182
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=47.44 E-value=89 Score=26.67 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=44.1
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-c-eeeeEE-EecCccccceeeEEEEEeecCC-EEEEeeccCCCccccccCCcEEEE
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-S-WTKVFS-FAGGVFGIFTYAKALAYSKSGD-KVLVDKFLYDEDEDEGINKWELDW 336 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-~-W~~~~~-i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~l~~ 336 (378)
+|++.+++..+. .+.||.++. . ...... ... .....-+++.++|. .++.. ..++.+..
T Consensus 22 ~~~~l~~~~~d~--~v~iw~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~-----------~~dg~i~~ 83 (342)
T 1yfq_A 22 SKSLLLITSWDG--SLTVYKFDIQAKNVDLLQSLRY-----KHPLLCCNFIDNTDLQIYVG-----------TVQGEILK 83 (342)
T ss_dssp GGTEEEEEETTS--EEEEEEEETTTTEEEEEEEEEC-----SSCEEEEEEEESSSEEEEEE-----------ETTSCEEE
T ss_pred CCCEEEEEcCCC--eEEEEEeCCCCccccceeeeec-----CCceEEEEECCCCCcEEEEE-----------cCCCeEEE
Confidence 566666665555 899999977 2 122221 222 11233466677888 77777 46789999
Q ss_pred EEC-CCCeEEEEE
Q 043816 337 YDL-QNQRAAGQV 348 (378)
Q Consensus 337 yd~-~t~~~~~~v 348 (378)
||+ ++++.. .+
T Consensus 84 wd~~~~~~~~-~~ 95 (342)
T 1yfq_A 84 VDLIGSPSFQ-AL 95 (342)
T ss_dssp ECSSSSSSEE-EC
T ss_pred EEeccCCceE-ec
Confidence 999 888776 43
No 183
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=47.11 E-value=1.6e+02 Score=26.54 Aligned_cols=192 Identities=8% Similarity=0.049 Sum_probs=92.8
Q ss_pred ceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC---
Q 043816 110 GLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN--- 186 (378)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~--- 186 (378)
.+|++.. ...+...++-+++...+-+. .....++.+|+..+ +|..... ....+..++..+.
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~-------~~~~~~l~~d~~~~--~lywsD~------~~~~I~~~~~~g~~~~ 147 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPN-------LRNVVALDTEVASN--RIYWSDL------SQRMICSTQLDRAHGV 147 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECS-------CSCEEEEEEETTTT--EEEEEET------TTTEEEEEEC------
T ss_pred ceeEEec-cceeEEEccCCcceeEeccc-------cCcceEEeeeeccC--ceEEEec------CCCeEEEEEcccCCCC
Confidence 3455554 45567777766655544221 34567788887655 2333221 1234555555431
Q ss_pred -ceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE--e
Q 043816 187 -SSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN--F 260 (378)
Q Consensus 187 -~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~--~ 260 (378)
....+. . .... .-.++.+ +|.|||.-... ..|.++|+.......+-. .... . -..+++ .
T Consensus 148 ~~~~~~~-~--~~~~-~p~glavD~~~~~lY~~d~~~------~~I~~~~~~g~~~~~l~~-~~~~---~-P~~iavdp~ 212 (400)
T 3p5b_L 148 SSYDTVI-S--RDIQ-APDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFR-ENGS---K-PRAIVVDPV 212 (400)
T ss_dssp CCCEEEE-C--SSCS-CEEEEEEETTTTEEEEEETTT------TEEEEECTTTCSEEEEEE-CSSC---C-EEEEEEETT
T ss_pred CcceEEE-e--CCCC-CcccEEEEecCCceEEEECCC------CeEEEEeCCCCceEEEEe-CCCC---C-cceEEEecc
Confidence 111111 0 0011 1114443 68999986433 359999998765444311 1111 1 222333 3
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
+|.|+....... ..|....++.. ....+-.. .+....-+++...++.|++.. .....|..+|++
T Consensus 213 ~g~ly~td~~~~-~~I~~~~~dG~--~~~~~~~~---~l~~P~glavd~~~~~lY~aD----------~~~~~I~~~d~d 276 (400)
T 3p5b_L 213 HGFMYWTDWGTP-AKIKKGGLNGV--DIYSLVTE---NIQWPNGITLDLLSGRLYWVD----------SKLHSISSIDVN 276 (400)
T ss_dssp TTEEEEEECSSS-CCEEEEETTSC--SCEEEECS---SCSCEEEEEEETTTTEEEEEE----------TTTTEEEEEETT
T ss_pred cCeEEEEeCCCC-CEEEEEeCCCC--ccEEEEEC---CCCceEEEEEEeCCCEEEEEE----------CCCCEEEEEeCC
Confidence 577777654321 14444444331 11111110 112233366665677777774 355788888888
Q ss_pred CCeEEEEEE
Q 043816 341 NQRAAGQVT 349 (378)
Q Consensus 341 t~~~~~~v~ 349 (378)
....+ .+.
T Consensus 277 G~~~~-~~~ 284 (400)
T 3p5b_L 277 GGNRK-TIL 284 (400)
T ss_dssp SCCCE-EEE
T ss_pred CCccE-EEE
Confidence 77666 543
No 184
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=46.64 E-value=1.3e+02 Score=25.33 Aligned_cols=190 Identities=13% Similarity=0.157 Sum_probs=92.6
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|+....+..+.|||..+++....-... ......+.+.+..+ + ++... ....+.+|+.+++.-..
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~-~-l~s~~-------~d~~i~iwd~~~~~~~~ 143 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKCLKTLKGH------SNYVFCCNFNPQSN-L-IVSGS-------FDESVRIWDVKTGKCLK 143 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSS-E-EEEEE-------TTSCEEEEETTTCCEEE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEcCC------CCCEEEEEEcCCCC-E-EEEEe-------CCCcEEEEECCCCEEEE
Confidence 4444445678999999888755321111 23345556666433 2 22221 23467888887764221
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEE-eCCeEEE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGN-FSGCLYF 266 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~-~~G~L~l 266 (378)
.- +.. ...-.++.+ +|.+...+..+ ..|..+|+.+.+.. .+...... . ...+.. .+|+..+
T Consensus 144 ~~---~~~-~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~ 208 (312)
T 4ery_A 144 TL---PAH-SDPVSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDDNP----P-VSFVKFSPNGKYIL 208 (312)
T ss_dssp EE---CCC-SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCSSCC----C-EEEEEECTTSSEEE
T ss_pred Ee---cCC-CCcEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEeccCCC----c-eEEEEECCCCCEEE
Confidence 11 100 000012222 45543333322 23889999876542 23211111 1 222322 3566666
Q ss_pred EEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 267 SCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 267 ~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+...+. .+.+|.+... .....+........... ......++..++.. ..++.+.+||+++++..
T Consensus 209 ~~~~d~--~i~iwd~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~sg-----------~~dg~i~vwd~~~~~~~ 272 (312)
T 4ery_A 209 AATLDN--TLKLWDYSKG-KCLKTYTGHKNEKYCIF-ANFSVTGGKWIVSG-----------SEDNLVYIWNLQTKEIV 272 (312)
T ss_dssp EEETTT--EEEEEETTTT-EEEEEECSSCCSSSCCC-EEEECSSSCEEEEC-----------CTTSCEEEEETTTCCEE
T ss_pred EEcCCC--eEEEEECCCC-cEEEEEEecCCceEEEE-EEEEeCCCcEEEEE-----------CCCCEEEEEECCCchhh
Confidence 665555 8999998761 11222222100001111 11122355656655 46789999999998876
No 185
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=45.91 E-value=2.1e+02 Score=27.36 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=40.2
Q ss_pred cceEEe-ecCCceEEEEcCCCcceeecC-CCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 109 NGLIAL-KNGENDIALWNPSTKKHVLLP-KFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 109 ~Gll~~-~~~~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
+|-+++ ...+..+.|||..+++....- ........+......+.+.|.+. .++... ....+.+++..++
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s~s-------~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--KIASAS-------ADKTIKIWNVATL 271 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS--EEEEEE-------TTSEEEEEETTTT
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC--EEEEEe-------CCCeEEEEeCCCC
Confidence 454433 335678999999988765432 21111111234566777777543 232222 2457888988887
Q ss_pred ceE
Q 043816 187 SSR 189 (378)
Q Consensus 187 ~W~ 189 (378)
...
T Consensus 272 ~~~ 274 (611)
T 1nr0_A 272 KVE 274 (611)
T ss_dssp EEE
T ss_pred cee
Confidence 654
No 186
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=45.83 E-value=1.5e+02 Score=25.89 Aligned_cols=188 Identities=10% Similarity=0.050 Sum_probs=93.8
Q ss_pred cc-eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 109 NG-LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 109 ~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
+| +|+....+..+.|||...+....+... ......+.+.+.+. + ++... ....+.+|+..++.
T Consensus 119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~-~-l~~~~-------~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNKTGALLNVLNFH-------RAPIVSVKWNKDGT-H-IISMD-------VENVTILWNVISGT 182 (425)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCC-------CSCEEEEEECTTSS-E-EEEEE-------TTCCEEEEETTTTE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeccCC-------CccEEEEEECCCCC-E-EEEEe-------cCCeEEEEECCCCc
Confidence 44 455444567899999433333344322 23455566666433 3 22222 23467788887765
Q ss_pred eEEeeccCCcccc--------------CCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCC
Q 043816 188 SRRIRVDFPYYFS--------------HPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSG 252 (378)
Q Consensus 188 W~~~~~~~p~~~~--------------~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~ 252 (378)
-...- ..+.... ...-...-+|.+ ..+... ..|..+|+.+.... .+..... .
T Consensus 183 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------g~i~~~d~~~~~~~~~~~~~~~-----~ 249 (425)
T 1r5m_A 183 VMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDDKF-VIPGPK------GAIFVYQITEKTPTGKLIGHHG-----P 249 (425)
T ss_dssp EEEEE-CCC---------------CCCBSCCEEEETTEE-EEECGG------GCEEEEETTCSSCSEEECCCSS-----C
T ss_pred EEEEe-eccccCccceeeccccCCcceeeEEEEcCCCEE-EEEcCC------CeEEEEEcCCCceeeeeccCCC-----c
Confidence 43322 1111100 011122223443 333222 24899999875432 2221111 1
Q ss_pred CeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCC
Q 043816 253 NLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK 331 (378)
Q Consensus 253 ~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 331 (378)
-..+... +|++.++...+. .+.+|.++. ......+... .....-+.+.++| .++.. ..+
T Consensus 250 -i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~-~~~~~~~~~~----~~~i~~~~~~~~~-~l~~~-----------~~d 309 (425)
T 1r5m_A 250 -ISVLEFNDTNKLLLSASDDG--TLRIWHGGN-GNSQNCFYGH----SQSIVSASWVGDD-KVISC-----------SMD 309 (425)
T ss_dssp -EEEEEEETTTTEEEEEETTS--CEEEECSSS-BSCSEEECCC----SSCEEEEEEETTT-EEEEE-----------ETT
T ss_pred -eEEEEECCCCCEEEEEcCCC--EEEEEECCC-CccceEecCC----CccEEEEEECCCC-EEEEE-----------eCC
Confidence 2233333 566655555555 899998876 1112222210 1122335556666 66666 477
Q ss_pred cEEEEEECCCCeEE
Q 043816 332 WELDWYDLQNQRAA 345 (378)
Q Consensus 332 ~~l~~yd~~t~~~~ 345 (378)
+.+.+||+++++..
T Consensus 310 ~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 310 GSVRLWSLKQNTLL 323 (425)
T ss_dssp SEEEEEETTTTEEE
T ss_pred CcEEEEECCCCcEe
Confidence 89999999988876
No 187
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=45.83 E-value=2.1e+02 Score=27.41 Aligned_cols=200 Identities=13% Similarity=-0.041 Sum_probs=99.6
Q ss_pred ceEEEEcCCC------cceeecC-CCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCC-CcccEEEEEEcC-CCceE
Q 043816 119 NDIALWNPST------KKHVLLP-KFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGK-VEYTEIAVYSLK-SNSSR 189 (378)
Q Consensus 119 ~~~~V~NP~T------~~~~~LP-~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~-~~~~~~~vyss~-t~~W~ 189 (378)
..++++|..+ ++...|. ... .......+.|++ ++ |+......... .....+.+++.. ++.+.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~SpDG-~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAH-------RFVTGPRLSPDG-RQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCS-------SEECCCEECTTS-SE-EEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCC-------CcccCceECCCC-CE-EEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 4799999999 7777775 322 122334455544 33 22222211111 123578888888 57433
Q ss_pred EeeccCCccccCCCCceE--ECCeeEEEEEeCCCCCCCCEEEEEECCCceEeee-cCCCCCCC---CCCCeeEEEEe-CC
Q 043816 190 RIRVDFPYYFSHPRDGTF--ARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEV-PLPHLENR---DSGNLMYMGNF-SG 262 (378)
Q Consensus 190 ~~~~~~p~~~~~~~~~v~--~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~---~~~~~~~l~~~-~G 262 (378)
... .+..........+. -+|.+|+.+... ....|..+|+.+.++..+ ........ ..+ ...+... +|
T Consensus 232 ~~~-~l~~~~~~~~~~~~~spdg~l~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~-~~~~~~~~~~ 305 (662)
T 3azo_A 232 DTR-TLLGGPEEAIAQAEWAPDGSLIVATDRT----GWWNLHRVDPATGAATQLCRREEEFAGPLWTPG-MRWFAPLANG 305 (662)
T ss_dssp EEE-EEEEETTBCEEEEEECTTSCEEEEECTT----SSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT-CCSEEECTTS
T ss_pred ccE-EeCCCCCceEcceEECCCCeEEEEECCC----CCeEEEEEECCCCceeecccccccccCcccccc-CceEeEeCCC
Confidence 222 11111000101222 278888776443 234699999977777654 22221110 001 1234444 67
Q ss_pred eEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 263 CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 263 ~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
++.+.... . ...||.++-.=.+..++... ......+. ..+++.+++..... .....++.+|++++
T Consensus 306 ~~~~~~~~-~--~~~l~~~d~~~~~~~~l~~~----~~~~~~~~-s~~~~~~~~~~~~~-------~~~~~i~~~d~~~g 370 (662)
T 3azo_A 306 LIAVVHGK-G--AAVLGILDPESGELVDAAGP----WTEWAATL-TVSGTRAVGVAASP-------RTAYEVVELDTVTG 370 (662)
T ss_dssp CEEEEEBS-S--SCEEEEEETTTTEEEECCSS----CCEEEEEE-EEETTEEEEEEEET-------TEEEEEEEEETTTC
T ss_pred EEEEEEEc-C--ccEEEEEECCCCcEEEecCC----CCeEEEEE-ecCCCEEEEEEcCC-------CCCCEEEEEECCCC
Confidence 87776665 3 88999886410122333321 11122231 33556555552100 12247888999999
Q ss_pred eEEEEEE
Q 043816 343 RAAGQVT 349 (378)
Q Consensus 343 ~~~~~v~ 349 (378)
+.+ .+.
T Consensus 371 ~~~-~l~ 376 (662)
T 3azo_A 371 RAR-TIG 376 (662)
T ss_dssp CEE-EEE
T ss_pred ceE-Eee
Confidence 888 664
No 188
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=45.73 E-value=1.7e+02 Score=26.42 Aligned_cols=201 Identities=12% Similarity=0.085 Sum_probs=102.7
Q ss_pred cccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCC
Q 043816 107 TCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKS 185 (378)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 185 (378)
..+|-|.+.. ....+.+++|.+++...+..... ... +.+++..+ .++.... . ....+.+++..+
T Consensus 139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~------~~~--ia~~~~g~--~l~~~d~--~---~~~~I~~~d~~~ 203 (409)
T 3hrp_A 139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK------GGK--PAVTKDKQ--RVYSIGW--E---GTHTVYVYMKAS 203 (409)
T ss_dssp CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC------BCB--CEECTTSS--EEEEEBS--S---TTCEEEEEEGGG
T ss_pred eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC------CCc--eeEecCCC--cEEEEec--C---CCceEEEEEcCC
Confidence 3566665555 35689999999988877644321 111 45566544 2222210 0 111566666654
Q ss_pred Cc-eEEeeccCCc-cccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeec-CCCCCCCCCCCe-e-EE
Q 043816 186 NS-SRRIRVDFPY-YFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVP-LPHLENRDSGNL-M-YM 257 (378)
Q Consensus 186 ~~-W~~~~~~~p~-~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~-~-~l 257 (378)
+. .+.+. .... ...... ++.+ +|.||+ +.. ...|..+|+.+.....+. .+.... .... . .+
T Consensus 204 ~~~~~~~g-~~~~~~~~~p~-~iav~p~~g~lyv-~d~------~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~i 272 (409)
T 3hrp_A 204 GWAPTRIG-QLGSTFSGKIG-AVALDETEEWLYF-VDS------NKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYL 272 (409)
T ss_dssp TTCEEEEE-ECCTTSCSCCC-BCEECTTSSEEEE-ECT------TCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEE
T ss_pred CceeEEee-eccchhcCCcE-EEEEeCCCCeEEE-EEC------CCcEEEEECCCCCEEEEecccccCC--CCCCccccE
Confidence 32 23332 1111 111122 3333 689998 332 135999999877655541 111111 1102 2 45
Q ss_pred EEe--CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecC-c--c-------ccceeeEEEEEeecCCEEEEeeccCCCcc
Q 043816 258 GNF--SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGG-V--F-------GIFTYAKALAYSKSGDKVLVDKFLYDEDE 325 (378)
Q Consensus 258 ~~~--~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~-~--~-------~~~~~~~~~~~~~~g~~vl~~~~~~~~~~ 325 (378)
+.. +|.|+++..... .|..|..+..-. ...... . + ..+....-+++.++|. |++..
T Consensus 273 a~~p~~g~lyv~d~~~~--~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad------- 340 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLS--SVYKITPDGECE--WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD------- 340 (409)
T ss_dssp EEETTTTEEEEEETTTT--EEEEECTTCCEE--EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE-------
T ss_pred EEeCCCCEEEEEeCCCC--EEEEEecCCCEE--EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe-------
Confidence 444 578888765444 555554433311 111111 0 0 0122334466777887 55553
Q ss_pred cccc-CCcEEEEEECCCCeEEEEEE
Q 043816 326 DEGI-NKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 326 ~~~~-~~~~l~~yd~~t~~~~~~v~ 349 (378)
. ...++..+|+.++++. .+.
T Consensus 341 ---~~~~~~I~~~~~~~G~v~-~~~ 361 (409)
T 3hrp_A 341 ---GFKGYCLRKLDILDGYVS-TVA 361 (409)
T ss_dssp ---TTTTCEEEEEETTTTEEE-EEE
T ss_pred ---CCCCCEEEEEECCCCEEE-EEe
Confidence 4 5678999998888888 654
No 189
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=45.57 E-value=1.5e+02 Score=25.75 Aligned_cols=78 Identities=14% Similarity=0.022 Sum_probs=42.2
Q ss_pred ceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCce-EeeecCCCCCCCCCCCeeEEEEe--CCeEEEEEecC-CCCcEEE
Q 043816 205 GTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEE-FFEVPLPHLENRDSGNLMYMGNF--SGCLYFSCFCD-YPEPVDI 278 (378)
Q Consensus 205 ~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~l~~~--~G~L~l~~~~~-~~~~i~i 278 (378)
++.+ +|.|||+.... .......|+.||+.+.+ ...+.+|..........-.++.. +|.+++..... ....+.+
T Consensus 71 gv~~d~~g~L~v~D~g~-~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v 149 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGN-QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIR 149 (343)
T ss_dssp EEEECSSSEEEEEECHH-HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEE
T ss_pred EEEEcCCCcEEEEcCCC-CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEE
Confidence 5555 48898875321 00012359999998776 56677764332101102334444 46777765411 1227777
Q ss_pred EEEcC
Q 043816 279 WIMKE 283 (378)
Q Consensus 279 W~l~~ 283 (378)
|.++.
T Consensus 150 ~d~~~ 154 (343)
T 2qe8_A 150 VDLQT 154 (343)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 87765
No 190
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=45.18 E-value=1.5e+02 Score=25.55 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=79.2
Q ss_pred cccceEEeecC--CceEEEEcCCCcceeecCCCCCC---CCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEE
Q 043816 107 TCNGLIALKNG--ENDIALWNPSTKKHVLLPKFWSD---FDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVY 181 (378)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~---~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vy 181 (378)
+.+|.+.++.. ...+.++++-.+....+...... .........++.+|+..+... ... .....+.+|
T Consensus 152 ~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~--v~d------~~~~~I~~~ 223 (329)
T 3fvz_A 152 PSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC--VAD------RENGRIQCF 223 (329)
T ss_dssp TTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE--EEE------TTTTEEEEE
T ss_pred CCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE--EEE------CCCCEEEEE
Confidence 33787777763 56888999654444444322110 001133456778887654322 221 134578899
Q ss_pred EcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCC-CCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-
Q 043816 182 SLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPE-GYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN- 259 (378)
Q Consensus 182 ss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~-~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~- 259 (378)
+..++.....- ..+..........+..|.+|...+.... ......|.++|+.+.+....-.+..... .. -..++.
T Consensus 224 ~~~~G~~~~~~-~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~-p~~ia~~ 300 (329)
T 3fvz_A 224 KTDTKEFVREI-KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF-DM-PHDIVAS 300 (329)
T ss_dssp ETTTCCEEEEE-CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC-SS-EEEEEEC
T ss_pred ECCCCcEEEEE-eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc-CC-eeEEEEC
Confidence 99877654332 1111000000011122444443322110 0122358999987766544322211111 11 223433
Q ss_pred eCCeEEEEEecCCCCcEEEEEEcC
Q 043816 260 FSGCLYFSCFCDYPEPVDIWIMKE 283 (378)
Q Consensus 260 ~~G~L~l~~~~~~~~~i~iW~l~~ 283 (378)
.+|.|++...... .|.+|.++.
T Consensus 301 ~dG~lyvad~~~~--~I~~~~~~~ 322 (329)
T 3fvz_A 301 EDGTVYIGDAHTN--TVWKFTLTE 322 (329)
T ss_dssp TTSEEEEEESSSC--CEEEEEEEE
T ss_pred CCCCEEEEECCCC--EEEEEeCCc
Confidence 3678888776655 888888754
No 191
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=44.88 E-value=1.6e+02 Score=25.68 Aligned_cols=110 Identities=10% Similarity=0.025 Sum_probs=52.7
Q ss_pred CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE--eCCeEEEEEecCCCCcEEEEEEcCcee
Q 043816 209 RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN--FSGCLYFSCFCDYPEPVDIWIMKESWT 286 (378)
Q Consensus 209 ~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~--~~G~L~l~~~~~~~~~i~iW~l~~~W~ 286 (378)
+|.|||.-... ..|.++|+....-..+.. .... . -..+++ .+|.|+....... ..|....++.+-.
T Consensus 90 ~g~ly~~d~~~------~~I~~~~~dG~~~~~l~~-~~~~---~-P~giavdp~~g~ly~td~~~~-~~I~r~~~dG~~~ 157 (318)
T 3sov_A 90 GEKLYWTDSET------NRIEVSNLDGSLRKVLFW-QELD---Q-PRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSR 157 (318)
T ss_dssp TTEEEEEETTT------TEEEEEETTSCSCEEEEC-SSCS---S-EEEEEEEGGGTEEEEEECSSS-CEEEEEETTSCSC
T ss_pred CCeEEEEECCC------CEEEEEECCCCcEEEEEe-CCCC---C-ccEEEEeCCCCEEEEEecCCC-CEEEEEEcCCCCe
Confidence 68999975432 359999997654333311 1111 1 222333 3577777653211 1333333332211
Q ss_pred eeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 287 KVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 287 ~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+ .+-.. .+....-+++..+++.|++.. .....+..+|++....+
T Consensus 158 ~--~~~~~---~l~~Pnglavd~~~~~lY~aD----------~~~~~I~~~d~dG~~~~ 201 (318)
T 3sov_A 158 F--IIINS---EIYWPNGLTLDYEEQKLYWAD----------AKLNFIHKSNLDGTNRQ 201 (318)
T ss_dssp E--EEECS---SCSCEEEEEEETTTTEEEEEE----------TTTTEEEEEETTSCSCE
T ss_pred E--EEEEC---CCCCccEEEEeccCCEEEEEE----------CCCCEEEEEcCCCCceE
Confidence 1 11110 111223355555566666663 34566777777655444
No 192
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=44.04 E-value=1.6e+02 Score=25.46 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=48.0
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEE
Q 043816 227 LIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKAL 305 (378)
Q Consensus 227 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~ 305 (378)
.|..+|...+.-..+..... . -..+... +|++.+.+..+. .+.||.+...-.....+.. .....-+
T Consensus 195 ~i~iwd~~~~~~~~~~~h~~-----~-v~~~~~s~~g~~l~sgs~dg--~v~iwd~~~~~~~~~~~~~-----~~~v~~v 261 (343)
T 2xzm_R 195 RLKVWNTNFQIRYTFKAHES-----N-VNHLSISPNGKYIATGGKDK--KLLIWDILNLTYPQREFDA-----GSTINQI 261 (343)
T ss_dssp EEEEEETTTEEEEEEECCSS-----C-EEEEEECTTSSEEEEEETTC--EEEEEESSCCSSCSEEEEC-----SSCEEEE
T ss_pred EEEEEcCCCceeEEEcCccc-----c-ceEEEECCCCCEEEEEcCCC--eEEEEECCCCcccceeecC-----CCcEEEE
Confidence 47788854433322322111 1 2223332 567666666555 9999998541111122222 1113345
Q ss_pred EEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 306 AYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 306 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
++.+++..+... .+..+..||+.+++..
T Consensus 262 ~~sp~~~~la~~------------~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 262 AFNPKLQWVAVG------------TDQGVKIFNLMTQSKA 289 (343)
T ss_dssp EECSSSCEEEEE------------ESSCEEEEESSSCCSC
T ss_pred EECCCCCEEEEE------------CCCCEEEEEeCCCCCC
Confidence 666777655444 4566888888776543
No 193
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=43.89 E-value=2.7e+02 Score=28.07 Aligned_cols=116 Identities=7% Similarity=0.062 Sum_probs=58.0
Q ss_pred ceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE--eCCeEEEEEecCCCCcEEEE
Q 043816 205 GTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN--FSGCLYFSCFCDYPEPVDIW 279 (378)
Q Consensus 205 ~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~--~~G~L~l~~~~~~~~~i~iW 279 (378)
++.+ +|.|||.-... ..|.++|+....-..+-. .... . -..|++ .+|.||....... ..|..-
T Consensus 475 GLAvD~~~~~LY~tD~~~------~~I~v~~ldG~~~~~l~~-~~l~---~-P~gIaVDp~~g~LYwtD~g~~-~~I~~~ 542 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFR-ENGS---K-PRAIVVDPVHGFMYWTDWGTP-AKIKKG 542 (791)
T ss_dssp EEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEEE-CTTC---C-EEEEEEETTTTEEEEEECSSS-CEEEEE
T ss_pred eeeeeecCCcEEEEecCC------CeEEEEeCCCCeEEEEEe-CCCC---C-cceEEEecCCCCEEEecCCCC-CeEEEE
Confidence 5555 36999986433 369999998765444321 1111 1 222333 3577877754321 144444
Q ss_pred EEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 280 IMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 280 ~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
.++.. .+..+-.. .+....-+++...++.|++.. ....+|..+|++....+ .+
T Consensus 543 ~~dG~--~~~~lv~~---~l~~P~GLavD~~~~~LYwaD----------~~~~~I~~~d~dG~~~~-~v 595 (791)
T 3m0c_C 543 GLNGV--DIYSLVTE---NIQWPNGITLDLLSGRLYWVD----------SKLHSISSIDVNGGNRK-TI 595 (791)
T ss_dssp ETTSC--CEEEEECS---SCSCEEEEEEETTTTEEEEEE----------TTTTEEEEEETTSCSCE-EE
T ss_pred ecCCC--ceEEEEeC---CCCCceEEEEecCCCeEEEEe----------CCCCcEEEEecCCCceE-EE
Confidence 44331 11111110 111222345554556677663 34557777777766655 44
No 194
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=43.63 E-value=39 Score=26.83 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=28.2
Q ss_pred eEEEEcCCCc-ceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEE
Q 043816 120 DIALWNPSTK-KHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLI 166 (378)
Q Consensus 120 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~ 166 (378)
.+++.||.|+ .|+..-.. ...+.+-+|...+.|+|+.+.
T Consensus 17 ~Vm~~D~~tk~~WvP~g~~--------~~~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 17 HVFQIDPNTKKNWVPTSKH--------AVTVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEECTTSSCCSEESCSS--------CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCCCceeecCCC--------CeEEEEEEcCCCCEEEEEEcc
Confidence 6899999997 88643222 135556688888889999865
No 195
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=43.36 E-value=1.5e+02 Score=25.12 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred EeecccceEEeecC------------------CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEE
Q 043816 104 IIDTCNGLIALKNG------------------ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRL 165 (378)
Q Consensus 104 ~~~s~~Gll~~~~~------------------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~ 165 (378)
+.-..+|-+.+.+. ...++.+||.+++...+. . .....++.+++..+...|.--
T Consensus 136 i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~------~~~p~gl~~spdg~~lyv~~~ 207 (305)
T 3dr2_A 136 LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D------LDHPNGLAFSPDEQTLYVSQT 207 (305)
T ss_dssp EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E------ESSEEEEEECTTSSEEEEEEC
T ss_pred EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c------CCCCcceEEcCCCCEEEEEec
Q ss_pred EEecCCCCcc-----cEEEEEEcCCCceEEeeccCCccccCCCC-ceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe
Q 043816 166 IQFGRGKVEY-----TEIAVYSLKSNSSRRIRVDFPYYFSHPRD-GTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF 239 (378)
Q Consensus 166 ~~~~~~~~~~-----~~~~vyss~t~~W~~~~~~~p~~~~~~~~-~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~ 239 (378)
. . ..+.+|+..++.......-.......... .+--+|. .|++.... |..||+..+...
T Consensus 208 ~--------~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~g-------v~~~~~~g~~~~ 271 (305)
T 3dr2_A 208 P--------EQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGTG-------VCVFDSDGQLLG 271 (305)
T ss_dssp C--------C---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSSE-------EEEECTTSCEEE
T ss_pred C--------CcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCCc-------EEEECCCCCEEE
Q ss_pred eecCCCCCCCCCCCeeEEEEeCCeEEEEE
Q 043816 240 EVPLPHLENRDSGNLMYMGNFSGCLYFSC 268 (378)
Q Consensus 240 ~i~~P~~~~~~~~~~~~l~~~~G~L~l~~ 268 (378)
.+..|.... .+.+...++.|++..
T Consensus 272 ~~~~~~~~~-----~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 272 HIPTPGTAS-----NCTFDQAQQRLFITG 295 (305)
T ss_dssp EEECSSCCC-----EEEECTTSCEEEEEE
T ss_pred EEECCCcee-----EEEEeCCCCEEEEEc
No 196
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=42.58 E-value=1.6e+02 Score=25.09 Aligned_cols=188 Identities=9% Similarity=-0.026 Sum_probs=90.0
Q ss_pred ceEEeecCCceEEEEcCCCcc--eeecCCCCCCCCCCCceeeEEeeeC-----CCCCEEEEEEEEecCCCCcccEEEEEE
Q 043816 110 GLIALKNGENDIALWNPSTKK--HVLLPKFWSDFDDYADLVDGFGYDA-----VSDDYKVVRLIQFGRGKVEYTEIAVYS 182 (378)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~--~~~LP~~~~~~~~~~~~~~~lg~d~-----~~~~ykVv~~~~~~~~~~~~~~~~vys 182 (378)
.+|+....+..+.+||..+++ ...+... ......+.+.+ ..+.+ ++... ....+.+|+
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~s~~~~~-l~~~~-------~d~~i~vwd 145 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGH-------KEIINAIDGIGGLGIGEGAPE-IVTGS-------RDGTVKVWD 145 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCC-------SSCEEEEEEESGGGCC-CCCE-EEEEE-------TTSCEEEEC
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEec-------ccceEEEeeccccccCCCccE-EEEEe-------CCCeEEEEe
Confidence 344444456789999988876 2223221 22333343322 11222 22221 234678888
Q ss_pred cCCCc--eEEeeccCCccccCCCCceE------ECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCe
Q 043816 183 LKSNS--SRRIRVDFPYYFSHPRDGTF------ARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNL 254 (378)
Q Consensus 183 s~t~~--W~~~~~~~p~~~~~~~~~v~------~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 254 (378)
..++. ..... .........-.++. -+|.+...+..+ ..|..+|+.+........... . -
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-----~-v 212 (357)
T 3i2n_A 146 PRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRWETNIKN-----G-V 212 (357)
T ss_dssp TTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEEEEECSS-----C-E
T ss_pred CCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEccC------CeEEEEECccCceeeecCCCC-----c-e
Confidence 87754 23322 11110000001222 345544444332 259999998876533311111 1 2
Q ss_pred eEEEEe----CCeEEEEEecCCCCcEEEEEEcC---ceeee-EEEecCccccceeeEEEEEeecCC-EEEEeeccCCCcc
Q 043816 255 MYMGNF----SGCLYFSCFCDYPEPVDIWIMKE---SWTKV-FSFAGGVFGIFTYAKALAYSKSGD-KVLVDKFLYDEDE 325 (378)
Q Consensus 255 ~~l~~~----~G~L~l~~~~~~~~~i~iW~l~~---~W~~~-~~i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~~~~~~~ 325 (378)
..+... +|...+++..+. .+.+|.+.. ..... ..+.. ......-+.+.++|. .++..
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~-------- 278 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEG--KFHVFDMRTQHPTKGFASVSEKA----HKSTVWQVRHLPQNRELFLTA-------- 278 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTT--EEEEEEEEEEETTTEEEEEEEEC----CSSCEEEEEEETTEEEEEEEE--------
T ss_pred EEEEcCCCCCCCCEEEEECCCC--eEEEEeCcCCCcccceeeeccCC----CcCCEEEEEECCCCCcEEEEE--------
Confidence 233333 566666666555 899999876 11111 11111 011233355666666 44444
Q ss_pred ccccCCcEEEEEECCCC
Q 043816 326 DEGINKWELDWYDLQNQ 342 (378)
Q Consensus 326 ~~~~~~~~l~~yd~~t~ 342 (378)
..++.+.+||+++.
T Consensus 279 ---~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 279 ---GGAGGLHLWKYEYP 292 (357)
T ss_dssp ---ETTSEEEEEEEECC
T ss_pred ---eCCCcEEEeecCCC
Confidence 36778888988754
No 197
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=42.52 E-value=1.3e+02 Score=27.82 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=46.7
Q ss_pred EECCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEec
Q 043816 207 FARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFC 270 (378)
Q Consensus 207 ~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~ 270 (378)
+.+|+||..........-...+...+...+.|+-+++|..... - .+-.+..++-|++...+
T Consensus 346 yYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHh--t-nlPFakvgD~l~mFgsE 406 (670)
T 3ju4_A 346 YYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHH--T-TLPFAKVGDDLIMFGSE 406 (670)
T ss_dssp EETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCS--S-CCCEEEETTEEEEEEEC
T ss_pred hhCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccc--c-CCCcceeCCEEEEEecc
Confidence 7799999988765432233457788888999999999977752 3 56678888999999875
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=42.37 E-value=2.4e+02 Score=27.04 Aligned_cols=99 Identities=14% Similarity=-0.036 Sum_probs=60.5
Q ss_pred EEEEEECCCceE-eeecCCCCCCCCCCCeeEEE-EeCCeEEEEEecCCCCcEEEEEEc-CceeeeEEEecCccccceeeE
Q 043816 227 LIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMG-NFSGCLYFSCFCDYPEPVDIWIMK-ESWTKVFSFAGGVFGIFTYAK 303 (378)
Q Consensus 227 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~-~~W~~~~~i~~~~~~~~~~~~ 303 (378)
.|.++|..+.+. ..++..... . .+. .-+|+..++..... .+.+|.+. +.-..+.+|... ....
T Consensus 178 ~V~viD~~t~~v~~~i~~g~~p------~-~v~~SpDGr~lyv~~~dg--~V~viD~~~~t~~~v~~i~~G-----~~P~ 243 (567)
T 1qks_A 178 QIALIDGSTYEIKTVLDTGYAV------H-ISRLSASGRYLFVIGRDG--KVNMIDLWMKEPTTVAEIKIG-----SEAR 243 (567)
T ss_dssp EEEEEETTTCCEEEEEECSSCE------E-EEEECTTSCEEEEEETTS--EEEEEETTSSSCCEEEEEECC-----SEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCc------c-ceEECCCCCEEEEEcCCC--eEEEEECCCCCCcEeEEEecC-----CCCc
Confidence 599999987644 445432211 2 232 23566555555433 78888774 222445666651 1233
Q ss_pred EEEEe----ecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 304 ALAYS----KSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 304 ~~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
-++++ ++|..+++.+ .....+.++|.+|.+..+.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n----------~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGA----------YWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp EEEECCSTTCTTTEEEEEE----------EETTEEEEEETTTCCEEEEEE
T ss_pred eeEEccccCCCCCEEEEEE----------ccCCeEEEEECCCCcEEEEEe
Confidence 46677 4898888885 367889999999988773333
No 199
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=41.77 E-value=1.9e+02 Score=25.77 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=54.0
Q ss_pred EEEEEECCCceE-eeecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEE
Q 043816 227 LIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKA 304 (378)
Q Consensus 227 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 304 (378)
.|..+|+.+.+. ..+..|.... . -..+... +|++.+++..+. .+.+|.++. ...+..+... ......-
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~---~-v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~-~~~~~~~~~~---~~~~v~~ 262 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHG---A-VSSICIDEECCVLILGTTRG--IIDIWDIRF-NVLIRSWSFG---DHAPITH 262 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGC---C-EEEEEECTTSCEEEEEETTS--CEEEEETTT-TEEEEEEBCT---TCEEEEE
T ss_pred eEEEEeCCCCeeeEEEccCCCCC---c-eEEEEECCCCCEEEEEcCCC--eEEEEEcCC-ccEEEEEecC---CCCceEE
Confidence 599999977544 3445442211 1 2233333 567766666665 899999876 1222333221 0111112
Q ss_pred EEEe----ecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 305 LAYS----KSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 305 ~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+... .++..++.. ..++.+.+||+++++..
T Consensus 263 ~~~~~~~s~~~~~l~s~-----------~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGG-----------SSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp EEECTTTCTTEEEEEEE-----------STTEEEEEEETTTTEEE
T ss_pred EEeccccCCCccEEEEE-----------cCCCcEEEEEcCCCcEE
Confidence 2222 244455555 46788999999988877
No 200
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=41.71 E-value=2.2e+02 Score=26.48 Aligned_cols=95 Identities=11% Similarity=0.146 Sum_probs=55.2
Q ss_pred EEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEE
Q 043816 228 IVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALA 306 (378)
Q Consensus 228 il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~ 306 (378)
|..+|..++....+..+... -..+... +|+..+....+. .+.+|.... .....+... .....-++
T Consensus 327 i~~w~~~~~~~~~~~~~~~~------v~~~~~s~~g~~l~~~~~dg--~v~~~~~~~--~~~~~~~~~----~~~v~~~~ 392 (577)
T 2ymu_A 327 VKLWNRNGQHLQTLTGHSSS------VWGVAFSPDGQTIASASDDK--TVKLWNRNG--QLLQTLTGH----SSSVRGVA 392 (577)
T ss_dssp EEEEETTSCEEEEECCCSSC------EEEEEECTTSSEEEEEETTS--EEEEEETTC--CEEEEEECC----SSCEEEEE
T ss_pred EEEEeCCCCeeEEEeCCCCC------EEEEEECCCCCEEEEEeCCC--EEEEEcCCC--CEEEEecCC----CCCeEEEE
Confidence 77888877766655432211 2233333 566665555555 899998644 233333321 11223456
Q ss_pred EeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 307 YSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 307 ~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
+.++|..|+.. ..++.+..||...+..+ .+
T Consensus 393 ~s~dg~~l~~~-----------~~d~~v~~~~~~~~~~~-~~ 422 (577)
T 2ymu_A 393 FSPDGQTIASA-----------SDDKTVKLWNRNGQLLQ-TL 422 (577)
T ss_dssp ECTTSSCEEEE-----------ETTSEEEEECTTCCEEE-EE
T ss_pred ECCCCCEEEEE-----------eCCCEEEEEeCCCCEEE-Ee
Confidence 67788777766 36778888887776666 44
No 201
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=41.69 E-value=1.9e+02 Score=25.87 Aligned_cols=209 Identities=13% Similarity=0.132 Sum_probs=102.8
Q ss_pred cccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEc--C
Q 043816 107 TCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSL--K 184 (378)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss--~ 184 (378)
+..++++.......++|+|-.-++...||.... +.-..+.+|.. .++..-++.+.. .. ....++.+|+. .
T Consensus 38 p~~s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~---nnVD~r~~~~l--~g~~~dla~as~-R~--~~~n~l~vf~iDp~ 109 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSLDGKMLHSYNTGKL---NNVDIRYDFPL--NGKKVDIAAASN-RS--EGKNTIEIYAIDGK 109 (355)
T ss_dssp GGGCEEEEEETTTEEEEEETTSCEEEEECCSCE---EEEEEEEEEEE--TTEEEEEEEEEE-CS--TTCCEEEEEEECTT
T ss_pred CCccEEEEEcCCCCEEEEcCCCcEEEEccCCCc---ccEEEeccccc--CCceEeEEEEeC-CC--CCCCeEEEEEECCC
Confidence 345565555555678888885555556764221 11122222221 222222333332 21 01457888855 6
Q ss_pred CCceEEeeccC--Ccccc-CCCCceEE-----CCeeEEEEEeCCCCCCCCEEEEEEC---CCc-----eEeeecCCCCCC
Q 043816 185 SNSSRRIRVDF--PYYFS-HPRDGTFA-----RGHVHWLVLNEPEGYNGDLIVAFDL---KSE-----EFFEVPLPHLEN 248 (378)
Q Consensus 185 t~~W~~~~~~~--p~~~~-~~~~~v~~-----~G~lYwl~~~~~~~~~~~~il~fD~---~~~-----~~~~i~~P~~~~ 248 (378)
++.++.+. .. |.... ..-.++++ .|.+|.+....++ .+..+++ .+. .-+.+.+|...
T Consensus 110 ~~~l~~i~-~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G-----~~~q~~l~~~~~g~~~~~lVR~f~lgsq~- 182 (355)
T 3amr_A 110 NGTLQSMT-DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEG-----EFEQYELKADKNGYISGKKVRAFKMNSQT- 182 (355)
T ss_dssp TCCEEECS-CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSS-----EEEEEEEEECTTSCEEEEEEEEEECSSCE-
T ss_pred CCceeecc-ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCC-----eEEEEEEEeCCCCcccceEEEEecCCCCc-
Confidence 78888886 33 42111 11124444 3677777766542 3555555 222 22334555322
Q ss_pred CCCCCeeEEEE-eCCeEEEEEecCCCCcEEEEEEcC------ceeeeEEEecCccccceeeEEEEE--eecCC-EEEEee
Q 043816 249 RDSGNLMYMGN-FSGCLYFSCFCDYPEPVDIWIMKE------SWTKVFSFAGGVFGIFTYAKALAY--SKSGD-KVLVDK 318 (378)
Q Consensus 249 ~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~------~W~~~~~i~~~~~~~~~~~~~~~~--~~~g~-~vl~~~ 318 (378)
....+. -.|.|++... ...||.++- .-..+..+....+. ....-+++ ..+|. .++..+
T Consensus 183 -----EgcvvDd~~g~Lyv~eE-----d~GIw~~da~p~~~~~~~~v~~~~~g~l~--aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 183 -----EGMAADDEYGRLYIAEE-----DEAIWKFSAEPDGGSNGTVIDRADGRHLT--RDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp -----EEEEEETTTTEEEEEET-----TTEEEEEECSTTSCSCCEEEEEBSSSSBC--SCEEEEEEEECGGGCEEEEEEE
T ss_pred -----ceEEEcCCCCeEEEecc-----cceEEEEeCCcCCCCCceEEEEecCCccc--cCcceEEEEecCCCCEEEEEEc
Confidence 222222 2467777643 234899873 24455554432111 12222444 34555 444442
Q ss_pred ccCCCccccccCCcEEEEEECC-CCeEEEEEEEec
Q 043816 319 FLYDEDEDEGINKWELDWYDLQ-NQRAAGQVTVHG 352 (378)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~yd~~-t~~~~~~v~~~~ 352 (378)
.....+.+||.+ +++..+.+.|..
T Consensus 251 ----------QG~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 251 ----------QGNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp ----------GGGTEEEEEESSTTCCEEEEEEECC
T ss_pred ----------CCCCEEEEEECCCCCcEEEEEEecC
Confidence 245789999997 666665766543
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=40.42 E-value=2.8e+02 Score=27.28 Aligned_cols=196 Identities=11% Similarity=-0.017 Sum_probs=99.7
Q ss_pred eEEEEcCCCcce--eecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC--c-eEEeecc
Q 043816 120 DIALWNPSTKKH--VLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN--S-SRRIRVD 194 (378)
Q Consensus 120 ~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~--~-W~~~~~~ 194 (378)
.+++++.-|++. +.+-..+.. .....+..+.++ ++|.++.... . ......+.+++..++ . |+.+. .
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~----~~~~~~~~~SpD-G~~l~~~~~~--~-~~~~~~l~~~d~~~~~~~~~~~l~-~ 314 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPEL----PKRGHGASVSSD-GRWVVITSSE--G-TDPVNTVHVARVTNGKIGPVTALI-P 314 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTC----TTCEEEEEECTT-SCEEEEEEEC--T-TCSCCEEEEEEEETTEECCCEEEE-C
T ss_pred EEEEEECCCCchhCEEEeccCCC----CeEEEEEEECCC-CCEEEEEEEc--c-CCCcceEEEEECCCCCCcccEEec-C
Confidence 477777666552 122111110 112344555554 3454444331 1 012456777787776 6 88776 2
Q ss_pred CCccccCCCCceEE-CCeeEEEEEeCCCCCCCCEEEEEECCC--ceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecC
Q 043816 195 FPYYFSHPRDGTFA-RGHVHWLVLNEPEGYNGDLIVAFDLKS--EEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCD 271 (378)
Q Consensus 195 ~p~~~~~~~~~v~~-~G~lYwl~~~~~~~~~~~~il~fD~~~--~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~ 271 (378)
.... ....+.. ++.+|+..... .....|...|+.+ +.|..+- |.... . ...+...++.|.+....+
T Consensus 315 ~~~~---~~~~~~~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~l~-~~~~~---~-l~~~~~~~~~lv~~~~~d 383 (741)
T 1yr2_A 315 DLKA---QWDFVDGVGDQLWFVSGDG---APLKKIVRVDLSGSTPRFDTVV-PESKD---N-LESVGIAGNRLFASYIHD 383 (741)
T ss_dssp SSSS---CEEEEEEETTEEEEEECTT---CTTCEEEEEECSSSSCEEEEEE-CCCSS---E-EEEEEEEBTEEEEEEEET
T ss_pred CCCc---eEEEEeccCCEEEEEECCC---CCCCEEEEEeCCCCccccEEEe-cCCCC---e-EEEEEEECCEEEEEEEEC
Confidence 1111 0112333 44677765432 1245799999987 5787653 32211 1 223444578888877776
Q ss_pred CCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 272 YPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 272 ~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
. ...||.++-.=.....+..+. ......++..++++.+++..... .....++.||+++++.+ .+
T Consensus 384 g--~~~l~~~~~~g~~~~~l~~~~---~~~v~~~~~s~d~~~l~~~~ss~-------~~P~~i~~~d~~tg~~~-~l 447 (741)
T 1yr2_A 384 A--KSQVLAFDLDGKPAGAVSLPG---IGSASGLSGRPGDRHAYLSFSSF-------TQPATVLALDPATAKTT-PW 447 (741)
T ss_dssp T--EEEEEEEETTSCEEEECBCSS---SCEEEEEECCBTCSCEEEEEEET-------TEEEEEEEEETTTTEEE-EC
T ss_pred C--EEEEEEEeCCCCceeeccCCC---CeEEEEeecCCCCCEEEEEEcCC-------CCCCEEEEEECCCCcEE-EE
Confidence 6 677887752101233343311 11222344445666666552100 23467999999998876 54
No 203
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=40.04 E-value=1.9e+02 Score=25.22 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=91.8
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
.|+....+..+.+||..+++....-... ......+.+.+..+.-.++... ....+.+++.+++....
T Consensus 168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~g~~l~sgs-------~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 168 QILTASGDGTCALWDVESGQLLQSFHGH------GADVLCLDLAPSETGNTFVSGG-------CDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECCCSSCCEEEEEE-------TTSCEEEEETTTCCEEE
T ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCC------CCCeEEEEEEeCCCCCEEEEEe-------CCCeEEEEECCCCcEEE
Confidence 4444445678999999888765321111 2233444555543222233222 24567888888765322
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEE-eCCeEEE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGN-FSGCLYF 266 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~-~~G~L~l 266 (378)
.- ... ...-.++.+ +|.....+..+ ..|-.+|+.+..-.. +....... . -..+.. .+|++.+
T Consensus 235 ~~-~~h---~~~v~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~~~~~~~---~-~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 235 AF-ETH---ESDVNSVRYYPSGDAFASGSDD------ATCRLYDLRADREVAIYSKESIIF---G-ASSVDFSLSGRLLF 300 (354)
T ss_dssp EE-CCC---SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCTTCCS---C-EEEEEECTTSSEEE
T ss_pred Ee-cCC---CCCeEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEcCCCccc---c-eeEEEEeCCCCEEE
Confidence 21 000 000013333 35443333322 238889998764332 22211111 1 222322 3577777
Q ss_pred EEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 267 SCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 267 ~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
++..+. .+.||.+.. ...+..+.. ......-+++.++|..|+.. ..++.+.+|+
T Consensus 301 ~g~~d~--~i~vwd~~~-~~~~~~l~~----h~~~v~~l~~spdg~~l~sg-----------s~D~~v~vW~ 354 (354)
T 2pbi_B 301 AGYNDY--TINVWDVLK-GSRVSILFG----HENRVSTLRVSPDGTAFCSG-----------SWDHTLRVWA 354 (354)
T ss_dssp EEETTS--CEEEEETTT-CSEEEEECC----CSSCEEEEEECTTSSCEEEE-----------ETTSEEEEEC
T ss_pred EEECCC--cEEEEECCC-CceEEEEEC----CCCcEEEEEECCCCCEEEEE-----------cCCCCEEecC
Confidence 766666 999998865 122233321 01223446777888877777 3677777764
No 204
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=39.82 E-value=1.7e+02 Score=26.27 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=33.2
Q ss_pred ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcccccc-CCcEEEEEECCCCeEEEE
Q 043816 284 SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGI-NKWELDWYDLQNQRAAGQ 347 (378)
Q Consensus 284 ~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~-~~~~l~~yd~~t~~~~~~ 347 (378)
....+.+|+.. ....-+++.++|..+++.. . .++.+.++|++|++..++
T Consensus 303 t~~vv~~i~vg-----~~p~gi~~s~Dg~~l~va~----------~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 303 VGQTSGPISNG-----HDSDAIIAAQDGASDNYAN----------SAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp SCCEEECCEEE-----EEECEEEECCSSSCEEEEE----------ETTTTEEEEEESSSCEEEEE
T ss_pred CCeEEEEEECC-----CCcceEEECCCCCEEEEEc----------cCCCCeEEEEECCCCcEEEE
Confidence 45666667651 1223366677888777774 3 378999999999998833
No 205
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=39.68 E-value=3.5e+02 Score=28.28 Aligned_cols=193 Identities=9% Similarity=0.094 Sum_probs=96.5
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|+....+..+.|||..|++...--... ......+.+.+..+...++... ....+.+|+..++.-..
T Consensus 671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~sg~-------~d~~v~vwd~~~~~~~~ 737 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGS-------NDFFLKLWDLNQKECRN 737 (1249)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSSCCEEEEEE-------TTSCEEEEETTSSSEEE
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEcCC------CCcEEEEEEecCCCceEEEEEe-------CCCeEEEEECCCcchhh
Confidence 4544445678999999998866432221 2344556666654444443332 24467888887765332
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCC------C-CCCeeEE-EE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENR------D-SGNLMYM-GN 259 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~------~-~~~~~~l-~~ 259 (378)
.-..... .-.++.+ +|..-..+..+ ..|..+|+.+..- ..+..+..... . ...-..+ ..
T Consensus 738 ~~~~h~~----~v~~~~~sp~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1249)
T 3sfz_A 738 TMFGHTN----SVNHCRFSPDDELLASCSAD------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 807 (1249)
T ss_dssp EECCCSS----CEEEEEECSSTTEEEEEESS------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred eecCCCC----CEEEEEEecCCCEEEEEECC------CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence 2100000 0001211 34433332222 2488888876543 22322211100 0 0001111 12
Q ss_pred eCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 260 FSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 260 ~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
.+|+..++.. .. .+.+|.+.. ... ..+.... ......+.+.++|..++.. ..++.+..||
T Consensus 808 ~dg~~l~~~~-~~--~v~~~d~~~~~~~--~~~~~~~---~~~v~~~~~sp~~~~l~~~-----------~~dg~v~vwd 868 (1249)
T 3sfz_A 808 ADGDKIIVAA-KN--KVLLFDIHTSGLL--AEIHTGH---HSTIQYCDFSPYDHLAVIA-----------LSQYCVELWN 868 (1249)
T ss_dssp TTSSEEEEEE-TT--EEEEEETTTCCEE--EEEECSS---SSCCCEEEECSSTTEEEEE-----------CSSSCEEEEE
T ss_pred CCCCEEEEEc-CC--cEEEEEecCCCce--eEEcCCC---CCceEEEEEcCCCCEEEEE-----------eCCCeEEEEE
Confidence 2455555544 23 788888766 322 2222110 1122336667788888877 4778899999
Q ss_pred CCCCeEE
Q 043816 339 LQNQRAA 345 (378)
Q Consensus 339 ~~t~~~~ 345 (378)
.++++..
T Consensus 869 ~~~~~~~ 875 (1249)
T 3sfz_A 869 IDSRLKV 875 (1249)
T ss_dssp TTTTEEE
T ss_pred cCCCcee
Confidence 9988765
No 206
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=39.63 E-value=2e+02 Score=25.30 Aligned_cols=140 Identities=6% Similarity=-0.035 Sum_probs=70.9
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSG 252 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~ 252 (378)
...+.|++..++.-...- .... .-..|.+ +|.+...+..+ .+..++..+...........-. .
T Consensus 156 d~~i~iwd~~~~~~~~~~-~~~~----~V~~v~fspdg~~l~s~s~~-------~~~~~~~~~~~~~~~~~~~~~~---~ 220 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEI-ETRG----EVKDLHFSTDGKVVAYITGS-------SLEVISTVTGSCIARKTDFDKN---W 220 (365)
T ss_dssp SCEEEEEETTTTEEEEEE-ECSS----CCCEEEECTTSSEEEEECSS-------CEEEEETTTCCEEEEECCCCTT---E
T ss_pred CCEEEEeECCCCcEEEEe-CCCC----ceEEEEEccCCceEEeccce-------eEEEEEeccCcceeeeecCCCC---C
Confidence 356778888776543321 1010 0112322 45543333221 2777777665443321111111 1
Q ss_pred Cee-EE-EEeCCeEEEEEecCCCC--cEEEEEEcC-ceeee--EEEecCccccceeeEEEEEeecCCEEEEeeccCCCcc
Q 043816 253 NLM-YM-GNFSGCLYFSCFCDYPE--PVDIWIMKE-SWTKV--FSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDE 325 (378)
Q Consensus 253 ~~~-~l-~~~~G~L~l~~~~~~~~--~i~iW~l~~-~W~~~--~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~ 325 (378)
.+ .+ ...+|+..+....+... .+.+|.+.. .+... ..+.. ......-+++.++|..|...
T Consensus 221 -~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~V~~~~~Spdg~~lasg-------- 287 (365)
T 4h5i_A 221 -SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN----RFKGITSMDVDMKGELAVLA-------- 287 (365)
T ss_dssp -EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES----SCSCEEEEEECTTSCEEEEE--------
T ss_pred -CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC----CCCCeEeEEECCCCCceEEE--------
Confidence 22 22 23467776666554433 455565554 22222 22222 11223446778899988887
Q ss_pred ccccCCcEEEEEECCCCeEE
Q 043816 326 DEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 326 ~~~~~~~~l~~yd~~t~~~~ 345 (378)
..++.+.+||.++++..
T Consensus 288 ---s~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 288 ---SNDNSIALVKLKDLSMS 304 (365)
T ss_dssp ---ETTSCEEEEETTTTEEE
T ss_pred ---cCCCEEEEEECCCCcEE
Confidence 47789999999998765
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=38.39 E-value=1.9e+02 Score=24.87 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=96.3
Q ss_pred ecccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816 106 DTCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK 184 (378)
Q Consensus 106 ~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 184 (378)
+..+|.+.+.. ....++++||.+++...+.... ...++.+++.+ .+ ++. . ...+.+|+..
T Consensus 57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~--------~v~~i~~~~dg-~l-~v~-~--------~~gl~~~d~~ 117 (326)
T 2ghs_A 57 DPASGTAWWFNILERELHELHLASGRKTVHALPF--------MGSALAKISDS-KQ-LIA-S--------DDGLFLRDTA 117 (326)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS--------CEEEEEEEETT-EE-EEE-E--------TTEEEEEETT
T ss_pred eCCCCEEEEEECCCCEEEEEECCCCcEEEEECCC--------cceEEEEeCCC-eE-EEE-E--------CCCEEEEECC
Confidence 33445554444 3467999999998876553221 23445566543 22 222 1 1247788888
Q ss_pred CCceEEeeccCCccccC-CCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe-
Q 043816 185 SNSSRRIRVDFPYYFSH-PRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF- 260 (378)
Q Consensus 185 t~~W~~~~~~~p~~~~~-~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~- 260 (378)
++..+.+. ..+..... .-..+.+ +|.+|+-............|..+| +.+...+.- ... . .-.++..
T Consensus 118 ~g~~~~~~-~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~---~-~~~i~~s~ 188 (326)
T 2ghs_A 118 TGVLTLHA-ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DIS---I-PNSICFSP 188 (326)
T ss_dssp TCCEEEEE-CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EES---S-EEEEEECT
T ss_pred CCcEEEEe-eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCc---c-cCCeEEcC
Confidence 88887665 32211100 0012222 678654332211111234688898 455544321 100 0 1123333
Q ss_pred CC-eEEEEEecCCCCcEEEEEEc--Ccee--eeEEE-ecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEE
Q 043816 261 SG-CLYFSCFCDYPEPVDIWIMK--ESWT--KVFSF-AGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWEL 334 (378)
Q Consensus 261 ~G-~L~l~~~~~~~~~i~iW~l~--~~W~--~~~~i-~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l 334 (378)
+| .|+++..... .|.+|.++ ..+. ....+ ... .......-+.+..+|. +++.. .....|
T Consensus 189 dg~~lyv~~~~~~--~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~-lwva~----------~~~~~v 253 (326)
T 2ghs_A 189 DGTTGYFVDTKVN--RLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGH-IWNAR----------WGEGAV 253 (326)
T ss_dssp TSCEEEEEETTTC--EEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSC-EEEEE----------ETTTEE
T ss_pred CCCEEEEEECCCC--EEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCC-EEEEE----------eCCCEE
Confidence 45 3555543333 67777664 1211 11111 110 0011222355556665 55552 245789
Q ss_pred EEEECCCCeEEEEEEE
Q 043816 335 DWYDLQNQRAAGQVTV 350 (378)
Q Consensus 335 ~~yd~~t~~~~~~v~~ 350 (378)
..||++++..+ .+..
T Consensus 254 ~~~d~~g~~~~-~i~~ 268 (326)
T 2ghs_A 254 DRYDTDGNHIA-RYEV 268 (326)
T ss_dssp EEECTTCCEEE-EEEC
T ss_pred EEECCCCCEEE-EEEC
Confidence 99999777777 6654
No 208
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=38.15 E-value=2.9e+02 Score=26.83 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=102.1
Q ss_pred eecccceEEeec-CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEc
Q 043816 105 IDTCNGLIALKN-GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSL 183 (378)
Q Consensus 105 ~~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 183 (378)
++..+|.|..++ ....+..+++-.+....+-... .....++.+|..++. +.... .....+++++.
T Consensus 44 ~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g------~~~P~GlAvD~~~~~--LY~tD------~~~~~I~v~~~ 109 (628)
T 4a0p_A 44 FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG------LDYPEGMAVDWLGKN--LYWAD------TGTNRIEVSKL 109 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------CSCCCEEEEETTTTE--EEEEE------TTTTEEEEEET
T ss_pred EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC------CCCcceEEEEeCCCE--EEEEE------CCCCEEEEEec
Confidence 345567776666 3457777887665444433222 223456778876553 33322 12457888887
Q ss_pred CCCceEEeeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-
Q 043816 184 KSNSSRRIRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN- 259 (378)
Q Consensus 184 ~t~~W~~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~- 259 (378)
....=+.+. . .....+ .++.+ +|.|||.-... ...|..+++....-..+- . ... . -.-|+.
T Consensus 110 dG~~~~~l~-~--~~l~~P-~~iavdp~~G~lY~tD~g~-----~~~I~r~~~dG~~~~~l~-~-~~~---~-P~GlalD 174 (628)
T 4a0p_A 110 DGQHRQVLV-W--KDLDSP-RALALDPAEGFMYWTEWGG-----KPKIDRAAMDGSERTTLV-P-NVG---R-ANGLTID 174 (628)
T ss_dssp TSTTCEEEE-C--SSCCCE-EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEE-C-SCS---S-EEEEEEE
T ss_pred CCCcEEEEE-e--CCCCCc-ccEEEccCCCeEEEeCCCC-----CCEEEEEeCCCCceEEEE-C-CCC---C-cceEEEc
Confidence 654322222 1 111111 14444 59999976421 236999999765544431 1 111 1 122333
Q ss_pred -eCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816 260 -FSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD 338 (378)
Q Consensus 260 -~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd 338 (378)
.+++||++..... .|....++..-.++ +.. ....|.++.-.++.|++.. .....+...|
T Consensus 175 ~~~~~LY~aD~~~~--~I~~~d~dG~~~~v--~~~------~l~~P~glav~~~~ly~tD----------~~~~~I~~~d 234 (628)
T 4a0p_A 175 YAKRRLYWTDLDTN--LIESSNMLGLNREV--IAD------DLPHPFGLTQYQDYIYWTD----------WSRRSIERAN 234 (628)
T ss_dssp TTTTEEEEEETTTT--EEEEEETTSCSCEE--EEE------CCSCEEEEEEETTEEEEEE----------TTTTEEEEEE
T ss_pred cccCEEEEEECCCC--EEEEEcCCCCceEE--eec------cCCCceEEEEECCEEEEec----------CCCCEEEEEE
Confidence 3678988876554 55555554421121 111 1124555554557788874 3567899999
Q ss_pred CCCCeEE
Q 043816 339 LQNQRAA 345 (378)
Q Consensus 339 ~~t~~~~ 345 (378)
..+++-.
T Consensus 235 k~tg~~~ 241 (628)
T 4a0p_A 235 KTSGQNR 241 (628)
T ss_dssp TTTCCSC
T ss_pred CCCCCce
Confidence 8777544
No 209
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=37.86 E-value=56 Score=24.02 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=29.7
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEE
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLI 166 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~ 166 (378)
.+++++|.|++|. |...... ..+...+..|...+.|.|+...
T Consensus 12 ~V~~~d~~~~~W~--p~~~g~~---gvs~V~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 12 TVMLYDDGNKRWL--PAGTGPQ---AFSRVQIYHNPTANSFRVVGRK 53 (115)
T ss_dssp ECBEECTTTSSCC--BSSCSCC---CCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCcee--ECCCCCC---CccEEEEEEeCCCCEEEEEEEE
Confidence 5788999999975 4332110 2345678888888899998876
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=37.73 E-value=1.8e+02 Score=24.47 Aligned_cols=158 Identities=9% Similarity=0.088 Sum_probs=82.0
Q ss_pred eeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCccccCCCCceE--ECCeeEEEEEeCCCCCC
Q 043816 147 LVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTF--ARGHVHWLVLNEPEGYN 224 (378)
Q Consensus 147 ~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~--~~G~lYwl~~~~~~~~~ 224 (378)
..-+..+++..+. ++.... ....+..|+..++.-+... .+.. -.++. -+|. +|++..
T Consensus 14 ~~Egp~w~~~~~~--l~~~d~------~~~~i~~~d~~~~~~~~~~--~~~~----~~~i~~~~dG~-l~v~~~------ 72 (297)
T 3g4e_A 14 CGESPVWEEVSNS--LLFVDI------PAKKVCRWDSFTKQVQRVT--MDAP----VSSVALRQSGG-YVATIG------ 72 (297)
T ss_dssp BEEEEEEETTTTE--EEEEET------TTTEEEEEETTTCCEEEEE--CSSC----EEEEEEBTTSS-EEEEET------
T ss_pred cccCCeEECCCCE--EEEEEC------CCCEEEEEECCCCcEEEEe--CCCc----eEEEEECCCCC-EEEEEC------
Confidence 4445666665443 222221 2456778888776554433 1110 01222 3577 455542
Q ss_pred CCEEEEEECCCceEeeec-CCCCCCCCCCCeeEEE-EeCCeEEEEEecCC-------CCcEEEEEEcC--ceeeeEEEec
Q 043816 225 GDLIVAFDLKSEEFFEVP-LPHLENRDSGNLMYMG-NFSGCLYFSCFCDY-------PEPVDIWIMKE--SWTKVFSFAG 293 (378)
Q Consensus 225 ~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~l~-~~~G~L~l~~~~~~-------~~~i~iW~l~~--~W~~~~~i~~ 293 (378)
..|..||+.+.+++.+. .+..... +. .-.+. ..+|++++...... ...-.||.++. .-..+ ...
T Consensus 73 -~~l~~~d~~~g~~~~~~~~~~~~~~-~~-~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--~~~ 147 (297)
T 3g4e_A 73 -TKFCALNWKEQSAVVLATVDNDKKN-NR-FNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY--FDQ 147 (297)
T ss_dssp -TEEEEEETTTTEEEEEEECCTTCSS-EE-EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE--EEE
T ss_pred -CeEEEEECCCCcEEEEEecCCCCCC-CC-CCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE--eec
Confidence 24999999998887763 3221110 01 11233 23688888765422 22567888864 22111 111
Q ss_pred CccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC--CCCeEE
Q 043816 294 GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL--QNQRAA 345 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~--~t~~~~ 345 (378)
.....-+++.++|+.+++.. .....+..||+ +++++.
T Consensus 148 -----~~~pngi~~spdg~~lyv~~----------~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 148 -----VDISNGLDWSLDHKIFYYID----------SLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp -----ESBEEEEEECTTSCEEEEEE----------GGGTEEEEEEECTTTCCEE
T ss_pred -----cccccceEEcCCCCEEEEec----------CCCCcEEEEeccCCCCccc
Confidence 11223366677888777763 34567888875 566553
No 211
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=37.35 E-value=2.3e+02 Score=25.42 Aligned_cols=195 Identities=7% Similarity=0.114 Sum_probs=94.3
Q ss_pred eEEeecCCceEEEEcCCCcce--eecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCc-
Q 043816 111 LIALKNGENDIALWNPSTKKH--VLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS- 187 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~- 187 (378)
+|+....+..+.||+..++.. ..+.+... ...+......+.+.+..+.+-+.+ . ....+.+|+.+++.
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~-~-------~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNI-FTGHTAVVEDVAWHLLHESLFGSV-A-------DDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEE-ECCCSSCEEEEEECSSCTTEEEEE-E-------TTSEEEEEETTCSCS
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceecccee-ecCCCCCEeeeEEeCCCCCEEEEE-e-------CCCeEEEEECCCCCC
Confidence 555555567899999887321 11111100 001134456677777544333222 2 24578899988752
Q ss_pred eEEeeccCCccccCCCCceEEC--Ce-eEEEEEeCCCCCCCCEEEEEECCCce--EeeecCCCCCCCCCCCeeEEEEe-C
Q 043816 188 SRRIRVDFPYYFSHPRDGTFAR--GH-VHWLVLNEPEGYNGDLIVAFDLKSEE--FFEVPLPHLENRDSGNLMYMGNF-S 261 (378)
Q Consensus 188 W~~~~~~~p~~~~~~~~~v~~~--G~-lYwl~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~l~~~-~ 261 (378)
.+.+. .+. .....-.++.++ |. ++..+..+ ..|..+|+.+.. ...+..... . -..+... +
T Consensus 267 ~~~~~-~~~-~~~~~v~~i~~~p~~~~~l~tg~~d------g~v~vwd~~~~~~~~~~~~~h~~-----~-v~~i~~sp~ 332 (430)
T 2xyi_A 267 SKPSH-TVD-AHTAEVNCLSFNPYSEFILATGSAD------KTVALWDLRNLKLKLHSFESHKD-----E-IFQVQWSPH 332 (430)
T ss_dssp SSCSE-EEE-CCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSCSEEEECCSS-----C-EEEEEECSS
T ss_pred Cccee-Eee-cCCCCeEEEEeCCCCCCEEEEEeCC------CeEEEEeCCCCCCCeEEeecCCC-----C-EEEEEECCC
Confidence 11111 000 000011133333 43 34343332 248899987622 222221111 1 2233332 3
Q ss_pred C-eEEEEEecCCCCcEEEEEEcC---ce----------eeeEEEecCccccceeeEEEEEeecCC-EEEEeeccCCCccc
Q 043816 262 G-CLYFSCFCDYPEPVDIWIMKE---SW----------TKVFSFAGGVFGIFTYAKALAYSKSGD-KVLVDKFLYDEDED 326 (378)
Q Consensus 262 G-~L~l~~~~~~~~~i~iW~l~~---~W----------~~~~~i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~~~~~~~~ 326 (378)
| .+.+++..+. .+.||.+.. .- ..+..... ......-+.+++++. +++..
T Consensus 333 ~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~~l~s~--------- 397 (430)
T 2xyi_A 333 NETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG----HTAKISDFSWNPNEPWIICSV--------- 397 (430)
T ss_dssp CTTEEEEEETTS--CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC----CSSCEEEEEECSSSTTEEEEE---------
T ss_pred CCCEEEEEeCCC--cEEEEeCCCCccccCccccccCCcceEEEcCC----CCCCceEEEECCCCCCEEEEE---------
Confidence 4 4555555555 899999865 11 11222111 011234466677777 55555
Q ss_pred cccCCcEEEEEECCCCeEE
Q 043816 327 EGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 327 ~~~~~~~l~~yd~~t~~~~ 345 (378)
..++.+.+|++.++.+.
T Consensus 398 --s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 398 --SEDNIMQVWQMAENVYN 414 (430)
T ss_dssp --ETTSEEEEEEECHHHHC
T ss_pred --ECCCCEEEeEccccccc
Confidence 46788999988776654
No 212
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=36.30 E-value=1.7e+02 Score=26.03 Aligned_cols=69 Identities=7% Similarity=0.040 Sum_probs=43.8
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
+|.+.+++..+. .+.+|.++. -..+..+.... ......-+++.++|..++.. ..++.+.+||++
T Consensus 181 ~~~~l~~~~~d~--~i~iwd~~~-~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~-----------~~dg~i~iwd~~ 244 (437)
T 3gre_A 181 EKSLLVALTNLS--RVIIFDIRT-LERLQIIENSP--RHGAVSSICIDEECCVLILG-----------TTRGIIDIWDIR 244 (437)
T ss_dssp SCEEEEEEETTS--EEEEEETTT-CCEEEEEECCG--GGCCEEEEEECTTSCEEEEE-----------ETTSCEEEEETT
T ss_pred CCCEEEEEeCCC--eEEEEeCCC-CeeeEEEccCC--CCCceEEEEECCCCCEEEEE-----------cCCCeEEEEEcC
Confidence 466666666655 999999876 11222333200 01223446667788878777 477889999999
Q ss_pred CCeEE
Q 043816 341 NQRAA 345 (378)
Q Consensus 341 t~~~~ 345 (378)
+++..
T Consensus 245 ~~~~~ 249 (437)
T 3gre_A 245 FNVLI 249 (437)
T ss_dssp TTEEE
T ss_pred CccEE
Confidence 88776
No 213
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=35.96 E-value=2.1e+02 Score=24.65 Aligned_cols=144 Identities=9% Similarity=0.069 Sum_probs=68.7
Q ss_pred EEEEEEcCCCceEEeeccCCccccCCCC-ceEECCe-eEEEEEeCCCCCCCCEEEEEE--CCCceEeee-cCCCCCCCCC
Q 043816 177 EIAVYSLKSNSSRRIRVDFPYYFSHPRD-GTFARGH-VHWLVLNEPEGYNGDLIVAFD--LKSEEFFEV-PLPHLENRDS 251 (378)
Q Consensus 177 ~~~vyss~t~~W~~~~~~~p~~~~~~~~-~v~~~G~-lYwl~~~~~~~~~~~~il~fD--~~~~~~~~i-~~P~~~~~~~ 251 (378)
.+..++..++.++.+. .. ....... .+.-+|. +|....... ....|.+|+ ..+...+.+ ..+.....
T Consensus 30 ~~~~~d~~~g~~~~~~-~~--~~~~p~~l~~spdg~~l~~~~~~~~---~~~~v~~~~~~~~~g~~~~~~~~~~~~~~-- 101 (361)
T 3scy_A 30 YTFRFNEETGESLPLS-DA--EVANPSYLIPSADGKFVYSVNEFSK---DQAAVSAFAFDKEKGTLHLLNTQKTMGAD-- 101 (361)
T ss_dssp EEEEEETTTCCEEEEE-EE--ECSCCCSEEECTTSSEEEEEECCSS---TTCEEEEEEEETTTTEEEEEEEEECSSSC--
T ss_pred EEEEEeCCCCCEEEee-cc--cCCCCceEEECCCCCEEEEEEccCC---CCCcEEEEEEeCCCCcEEEeeEeccCCCC--
Confidence 3333445677777766 22 1111111 2223465 565544210 112355554 444666655 23322211
Q ss_pred CCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC--ceee-eEEEecCcc------ccceeeEEEEEeecCCEEEEeeccCC
Q 043816 252 GNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE--SWTK-VFSFAGGVF------GIFTYAKALAYSKSGDKVLVDKFLYD 322 (378)
Q Consensus 252 ~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~--~W~~-~~~i~~~~~------~~~~~~~~~~~~~~g~~vl~~~~~~~ 322 (378)
-..+.. +|+..++..... ..+.+|.++. .-.. ...+..... .......-+++.++|+.+++..
T Consensus 102 --p~~~~~-dg~~l~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~---- 173 (361)
T 3scy_A 102 --PCYLTT-NGKNIVTANYSG-GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD---- 173 (361)
T ss_dssp --EEEEEE-CSSEEEEEETTT-TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE----
T ss_pred --cEEEEE-CCCEEEEEECCC-CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe----
Confidence 334444 776555544332 3899999975 2111 112221100 0112234467788998777763
Q ss_pred CccccccCCcEEEEEECCCC
Q 043816 323 EDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 323 ~~~~~~~~~~~l~~yd~~t~ 342 (378)
.....+..|+++.+
T Consensus 174 ------~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 174 ------LGTDQIHKFNINPN 187 (361)
T ss_dssp ------TTTTEEEEEEECTT
T ss_pred ------CCCCEEEEEEEcCC
Confidence 34567888866643
No 214
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=35.92 E-value=2.7e+02 Score=25.91 Aligned_cols=136 Identities=10% Similarity=-0.068 Sum_probs=69.8
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDS 251 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~ 251 (378)
...+.+|+..++.... . .+... ...-.++.+ +|.+-..+..+ ..|..+|+.+.+-.. +.....
T Consensus 466 d~~i~~~~~~~~~~~~-~-~~~~~-~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~h~----- 531 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF-D-LKTPL-RAKPSYISISPSETYIAAGDVM------GKILLYDLQSREVKTSRWAFRT----- 531 (615)
T ss_dssp TSCEEEEETTEEEEEE-E-CSSCC-SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEECCSCCCS-----
T ss_pred CCeEEEEECCCccccc-c-ccCCc-cCceEEEEECCCCCEEEEcCCC------CeEEEeeCCCCcceeEeecCCC-----
Confidence 3467788887765432 1 11110 001113333 56644444332 238899997765432 221111
Q ss_pred CCeeEEEEe-----------CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeecc
Q 043816 252 GNLMYMGNF-----------SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFL 320 (378)
Q Consensus 252 ~~~~~l~~~-----------~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~ 320 (378)
..-..+... +|++.++...+. .+.+|.++..-.....+.. ......-+++.++|. |+..
T Consensus 532 ~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~-l~s~--- 601 (615)
T 1pgu_A 532 SKINAISWKPAEKGANEEEIEEDLVATGSLDT--NIFIYSVKRPMKIIKALNA----HKDGVNNLLWETPST-LVSS--- 601 (615)
T ss_dssp SCEEEEEECCCC------CCSCCEEEEEETTS--CEEEEESSCTTCCEEETTS----STTCEEEEEEEETTE-EEEE---
T ss_pred CceeEEEEcCccccccccccCCCEEEEEcCCC--cEEEEECCCCceechhhhc----CccceEEEEEcCCCC-eEEe---
Confidence 102223222 577777766666 9999999761122232221 012233456677877 6666
Q ss_pred CCCccccccCCcEEEEEECCCC
Q 043816 321 YDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 321 ~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
..++.+.+||++++
T Consensus 602 --------~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 602 --------GADACIKRWNVVLE 615 (615)
T ss_dssp --------ETTSCEEEEEEC--
T ss_pred --------cCCceEEEEeeecC
Confidence 47788999988763
No 215
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=35.79 E-value=2e+02 Score=24.26 Aligned_cols=185 Identities=12% Similarity=0.116 Sum_probs=87.8
Q ss_pred EEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceE-E
Q 043816 112 IALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSR-R 190 (378)
Q Consensus 112 l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~-~ 190 (378)
|+....+..+.|||..|++...--... ......+.+.+..+ +-+ ... ....+.+|+..++.=. .
T Consensus 28 l~s~~~dg~v~lWd~~~~~~~~~~~~~------~~~v~~~~~~~~~~-~l~-s~s-------~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 28 VLTTLYSGRVELWNYETQVEVRSIQVT------ETPVRAGKFIARKN-WII-VGS-------DDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEEEGGGT-EEE-EEE-------TTSEEEEEETTTCCEEEE
T ss_pred EEEEcCCCcEEEEECCCCceeEEeecc------CCcEEEEEEeCCCC-EEE-EEC-------CCCEEEEEECCCCcEEEE
Confidence 333334567889999887754321111 12333444555432 222 221 2457888888776421 1
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCc-eEee-ecCCCCCCCCCCCeeEEEEe--CCeE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSE-EFFE-VPLPHLENRDSGNLMYMGNF--SGCL 264 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~-~~~~-i~~P~~~~~~~~~~~~l~~~--~G~L 264 (378)
.. .-.. .-.++.+ +|. +.+....+. .|..+|+.+. .... +... ...-..+... ++.+
T Consensus 93 ~~-~h~~----~v~~~~~~~~~~-~l~sgs~D~-----~v~lWd~~~~~~~~~~~~~h------~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 93 FE-AHPD----YIRSIAVHPTKP-YVLSGSDDL-----TVKLWNWENNWALEQTFEGH------EHFVMCVAFNPKDPST 155 (304)
T ss_dssp EE-CCSS----CEEEEEECSSSS-EEEEEETTS-----CEEEEEGGGTTEEEEEECCC------CSCEEEEEECTTCTTE
T ss_pred Ee-CCCC----cEEEEEEcCCCC-EEEEECCCC-----eEEEEECCCCcchhhhhccc------CCcEEEEEECCCCCCE
Confidence 11 0000 0012222 233 233333322 3888888654 2221 2211 1102223332 4566
Q ss_pred EEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEee--cCCEEEEeeccCCCccccccCCcEEEEEECCCC
Q 043816 265 YFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSK--SGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQ 342 (378)
Q Consensus 265 ~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~ 342 (378)
.+.+..+. .+.+|.+... .....+.... ......+.+.. ++..++.. ..++.+..||++++
T Consensus 156 l~sgs~D~--~v~iwd~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~-----------s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 156 FASGCLDR--TVKVWSLGQS-TPNFTLTTGQ---ERGVNYVDYYPLPDKPYMITA-----------SDDLTIKIWDYQTK 218 (304)
T ss_dssp EEEEETTS--EEEEEETTCS-SCSEEEECCC---TTCEEEEEECCSTTCCEEEEE-----------ETTSEEEEEETTTT
T ss_pred EEEEeCCC--eEEEEECCCC-CccceeccCC---cCcEEEEEEEEcCCCCEEEEE-----------cCCCeEEEEeCCCC
Confidence 66666566 9999998651 1111222100 01122233333 55566666 47789999999988
Q ss_pred eEE
Q 043816 343 RAA 345 (378)
Q Consensus 343 ~~~ 345 (378)
+..
T Consensus 219 ~~~ 221 (304)
T 2ynn_A 219 SCV 221 (304)
T ss_dssp EEE
T ss_pred ccc
Confidence 766
No 216
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=35.37 E-value=3.2e+02 Score=27.04 Aligned_cols=127 Identities=9% Similarity=0.129 Sum_probs=69.4
Q ss_pred EECCeeEEEEEeCC----CCCCCCEEEEEECCC--------ceEeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCC
Q 043816 207 FARGHVHWLVLNEP----EGYNGDLIVAFDLKS--------EEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPE 274 (378)
Q Consensus 207 ~~~G~lYwl~~~~~----~~~~~~~il~fD~~~--------~~~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~ 274 (378)
..+|.+|......- .......|++.|+.+ ..|+.+-.|..... .-.+...++.|++....+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~l~~~~~~~~~~ 372 (711)
T 4hvt_A 297 SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEV----FNFISTTKDRVFLATYDNVVA 372 (711)
T ss_dssp EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEE----EEEEEECSSCEEEEEEETTEE
T ss_pred eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCe----EEEEEEECCEEEEEEEECCEE
Confidence 66888888653320 011245699999865 36776544433221 234556677888877776644
Q ss_pred cEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEE
Q 043816 275 PVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 275 ~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~ 349 (378)
.+.++.++. .|.....+..+..+ .........+++.+++..... .....++.||++ ++.+ .+.
T Consensus 373 ~l~~~~~~~g~~~~~~~i~lp~~~---~~~~~~~~~~~~~~~~~~ss~-------~~P~~~~~~d~~-~~~~-~l~ 436 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVVLKLPYQN---AIFGMSSYEEEEEALITIENS-------IVPPTIYLWVKT-HELK-IIR 436 (711)
T ss_dssp EEEEECEETTEECCCEEECCCSTT---CEEEEECCTTCSCEEEEEECS-------SSCCEEEEECTT-SCEE-EEE
T ss_pred EEEEEECCCCceEEEeccCCCCCe---EEEEEeecCcCCEEEEEEecC-------CCCCEEEEEeCC-CcEE-EEe
Confidence 666666655 67543325442111 122233334555454442110 245689999988 6666 544
No 217
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=33.87 E-value=3.3e+02 Score=26.25 Aligned_cols=71 Identities=8% Similarity=0.005 Sum_probs=38.2
Q ss_pred CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCC-CCcccEEEEEEcCCCceEEee
Q 043816 118 ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRG-KVEYTEIAVYSLKSNSSRRIR 192 (378)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~-~~~~~~~~vyss~t~~W~~~~ 192 (378)
+..+.++|+.|++...+-...... ......+.+.|++ ++-++........ ......+.+++..++.-+.+.
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~---~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 107 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIE---SLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD 107 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTT---TTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred CCCEEEEECCCCcEEEEecccccc---ccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceEecc
Confidence 447899999999877654332210 1123455666653 3333332110000 012367889999887655554
No 218
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=33.40 E-value=3.6e+02 Score=26.59 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=98.2
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
+|-|-+......++.+||.|+++..++..... ......+..|+.. + +.+.. ...+..|+..++.|
T Consensus 417 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~----~~~v~~i~~d~~g---~-lwigt-------~~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 417 EGNLWFGTYLGNISYYNTRLKKFQIIELEKNE----LLDVRVFYEDKNK---K-IWIGT-------HAGVFVIDLASKKV 481 (781)
T ss_dssp TSCEEEEETTEEEEEECSSSCEEEECCSTTTC----CCCEEEEEECTTS---E-EEEEE-------TTEEEEEESSSSSC
T ss_pred CCCEEEEeccCCEEEEcCCCCcEEEeccCCCC----CCeEEEEEECCCC---C-EEEEE-------CCceEEEeCCCCeE
Confidence 44444433335688889988888877643111 1233344444322 1 22221 13577888888888
Q ss_pred EEeeccCCccccCCC--CceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEE-eCCe
Q 043816 189 RRIRVDFPYYFSHPR--DGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGN-FSGC 263 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~--~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~-~~G~ 263 (378)
+... ..+....... .+++. +|. .|++.... .+..||..++++..+..+..... +. -..+.+ .+|.
T Consensus 482 ~~~~-~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~------Gl~~~~~~~~~~~~~~~~~~l~~-~~-i~~i~~d~~g~ 551 (781)
T 3v9f_A 482 IHHY-DTSNSQLLENFVRSIAQDSEGR-FWIGTFGG------GVGIYTPDMQLVRKFNQYEGFCS-NT-INQIYRSSKGQ 551 (781)
T ss_dssp CEEE-CTTTSSCSCSCEEEEEECTTCC-EEEEESSS------CEEEECTTCCEEEEECTTTTCSC-SC-EEEEEECTTSC
T ss_pred Eecc-cCcccccccceeEEEEEcCCCC-EEEEEcCC------CEEEEeCCCCeEEEccCCCCCCC-Ce-eEEEEECCCCC
Confidence 7765 2221100011 13333 355 46665432 28999999999888754433221 11 233444 3577
Q ss_pred EEEEEecCCCCcE-EEEEEcC-ceeeeEEEec-CccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 264 LYFSCFCDYPEPV-DIWIMKE-SWTKVFSFAG-GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 264 L~l~~~~~~~~~i-~iW~l~~-~W~~~~~i~~-~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
|.+.+. . .+ ..|..+. .+. .+.. ..+.... ...+....+| .|.+. ....+..||++
T Consensus 552 lWi~T~--~--Glv~~~d~~~~~~~---~~~~~~gl~~~~-i~~i~~d~~g-~lW~~------------t~~Gl~~~~~~ 610 (781)
T 3v9f_A 552 MWLATG--E--GLVCFPSARNFDYQ---VFQRKEGLPNTH-IRAISEDKNG-NIWAS------------TNTGISCYITS 610 (781)
T ss_dssp EEEEET--T--EEEEESCTTTCCCE---EECGGGTCSCCC-CCEEEECSSS-CEEEE------------CSSCEEEEETT
T ss_pred EEEEEC--C--CceEEECCCCCcEE---EccccCCCCCce-EEEEEECCCC-CEEEE------------cCCceEEEECC
Confidence 777654 1 23 3332222 222 1221 1111111 1223344455 46666 45679999999
Q ss_pred CCeEEEEEE
Q 043816 341 NQRAAGQVT 349 (378)
Q Consensus 341 t~~~~~~v~ 349 (378)
+++++ ...
T Consensus 611 ~~~~~-~~~ 618 (781)
T 3v9f_A 611 KKCFY-TYD 618 (781)
T ss_dssp TTEEE-EEC
T ss_pred CCceE-Eec
Confidence 99988 654
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=33.13 E-value=2.2e+02 Score=24.63 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCeEEEEEecC---CCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCcccccc---CCcE
Q 043816 261 SGCLYFSCFCD---YPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGI---NKWE 333 (378)
Q Consensus 261 ~G~L~l~~~~~---~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~---~~~~ 333 (378)
+|+|+++.... ...+|.+|.++. .-.+...++...........-+++..+++.+++.. . ....
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd----------~~~~~~~~ 146 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD----------PAPDDKAA 146 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE----------CCSGGGCE
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEc----------CccCCCCe
Confidence 58999887541 122777777764 32222333211111111223356665556777763 2 4578
Q ss_pred EEEEECCCCeEE
Q 043816 334 LDWYDLQNQRAA 345 (378)
Q Consensus 334 l~~yd~~t~~~~ 345 (378)
+++||+++++..
T Consensus 147 i~v~d~~~g~~~ 158 (343)
T 2qe8_A 147 LIRVDLQTGLAA 158 (343)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCCEE
Confidence 999999988776
No 220
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=31.96 E-value=2.3e+02 Score=23.77 Aligned_cols=110 Identities=10% Similarity=-0.068 Sum_probs=54.0
Q ss_pred EEEEEECCCceE-eeecCCCCCCCCCCCeeEEEE-eCC-eEEEEEecCCCCcEEEEEEcCceeeeEEEecCcccc-ceee
Q 043816 227 LIVAFDLKSEEF-FEVPLPHLENRDSGNLMYMGN-FSG-CLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGI-FTYA 302 (378)
Q Consensus 227 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~l~~-~~G-~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~-~~~~ 302 (378)
.|..+|+.+.+. ..+..+..... -..+.. .+| .|++...... .+.+|.++. -..+..+....... ....
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~--~v~~~d~~~-~~~~~~~~~~~~~~~~~~~ 84 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPT----PMVPMVAPGGRIAYATVNKSE--SLVKIDLVT-GETLGRIDLSTPEERVKSL 84 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTC----CCCEEECTTSSEEEEEETTTT--EEEEEETTT-CCEEEEEECCBTTEEEECT
T ss_pred eEEEEECCCCcEEEEEEcCCCCCC----ccceEEcCCCCEEEEEeCCCC--eEEEEECCC-CCeEeeEEcCCcccccccc
Confidence 588999987654 34555542100 111222 245 4444443333 788887765 12223343311000 0011
Q ss_pred EEEEEeecCCEEEEeecc-CCCcccccc--CCcEEEEEECCCCeEE
Q 043816 303 KALAYSKSGDKVLVDKFL-YDEDEDEGI--NKWELDWYDLQNQRAA 345 (378)
Q Consensus 303 ~~~~~~~~g~~vl~~~~~-~~~~~~~~~--~~~~l~~yd~~t~~~~ 345 (378)
.-+++.++|+.+++.... .... ... .+..+..||+++++..
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~--~~~~~~~~~i~v~d~~~~~~~ 128 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLEL--THFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECS--SCEEECCCEEEEEETTTTEEE
T ss_pred cceEECCCCCEEEEEeccccccc--ccccccCceEEEEECCCCcEE
Confidence 225667788877777200 0000 000 2578999999998776
No 221
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=31.07 E-value=2.5e+02 Score=23.99 Aligned_cols=71 Identities=8% Similarity=-0.014 Sum_probs=37.9
Q ss_pred EEEeCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEee--cCCEEEEeeccCCCccccccCCcE
Q 043816 257 MGNFSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSK--SGDKVLVDKFLYDEDEDEGINKWE 333 (378)
Q Consensus 257 l~~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~ 333 (378)
+....+.+.+.+..+. .+.||.... .|.......... .......++..+ ++..|.-. ..++.
T Consensus 256 v~~s~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~-----------s~Dg~ 320 (330)
T 2hes_X 256 VAWGFNGLIASVGADG--VLAVYEEVDGEWKVFAKRALCH--GVYEINVVKWLELNGKTILATG-----------GDDGI 320 (330)
T ss_dssp EEECTTSCEEEEETTS--CEEEEEEETTEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEE-----------ETTSE
T ss_pred EEEcCCCEEEEEeCCC--EEEEEEcCCCceEEEecccccc--ccceEEEEEEecCCCceEEEEe-----------cCCCc
Confidence 3334555544555555 899999987 787665443210 010223345544 45556555 47889
Q ss_pred EEEEECCCC
Q 043816 334 LDWYDLQNQ 342 (378)
Q Consensus 334 l~~yd~~t~ 342 (378)
+..||+++.
T Consensus 321 v~~W~~~~~ 329 (330)
T 2hes_X 321 VNFWSLEKA 329 (330)
T ss_dssp EEEEEC---
T ss_pred EEEEEeccC
Confidence 999998753
No 222
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=30.64 E-value=2.4e+02 Score=23.66 Aligned_cols=144 Identities=13% Similarity=0.046 Sum_probs=81.4
Q ss_pred ccEEEEEEcCCCceEEeeccCCccccCCCCc-eEECCeeEEEEEeCCCCCCCCEEEEEECCCce-EeeecCCCCCCCCCC
Q 043816 175 YTEIAVYSLKSNSSRRIRVDFPYYFSHPRDG-TFARGHVHWLVLNEPEGYNGDLIVAFDLKSEE-FFEVPLPHLENRDSG 252 (378)
Q Consensus 175 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~-v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~ 252 (378)
...+.+++..+++=...- .++.. ....+ ...++.+|-+.... ..+.+||..+-+ -..++.|..
T Consensus 42 ~S~v~~vD~~tgkv~~~~-~l~~~--~fgeGi~~~~~~ly~ltw~~------~~v~v~D~~tl~~~~ti~~~~~------ 106 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRA-EVPPP--YFGAGIVAWRDRLIQLTWRN------HEGFVYDLATLTPRARFRYPGE------ 106 (243)
T ss_dssp SCEEEEEETTTCCEEEEE-ECCTT--CCEEEEEEETTEEEEEESSS------SEEEEEETTTTEEEEEEECSSC------
T ss_pred CceEEEEECCCCCEEEEE-eCCCC--cceeEEEEeCCEEEEEEeeC------CEEEEEECCcCcEEEEEeCCCC------
Confidence 568889999988533222 23321 11123 45578999887554 359999998754 455666531
Q ss_pred CeeEEEEeCCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccc-cceeeEEEEEeecCCEEEEeeccCCCccccccC
Q 043816 253 NLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFG-IFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN 330 (378)
Q Consensus 253 ~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~-~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~ 330 (378)
-.-|..-+++|++... .. + |++++- .=..+.+|.....+ ......-+- +.+| .|+... ..
T Consensus 107 -Gwglt~dg~~L~vSdg-s~--~--l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe-~~~G-~lyanv----------w~ 168 (243)
T 3mbr_X 107 -GWALTSDDSHLYMSDG-TA--V--IRKLDPDTLQQVGSIKVTAGGRPLDNLNELE-WVNG-ELLANV----------WL 168 (243)
T ss_dssp -CCEEEECSSCEEEECS-SS--E--EEEECTTTCCEEEEEECEETTEECCCEEEEE-EETT-EEEEEE----------TT
T ss_pred -ceEEeeCCCEEEEECC-CC--e--EEEEeCCCCeEEEEEEEccCCcccccceeeE-EeCC-EEEEEE----------CC
Confidence 2334444567777643 22 3 666664 44455666651111 011111122 2244 577663 24
Q ss_pred CcEEEEEECCCCeEEEEEEEe
Q 043816 331 KWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 331 ~~~l~~yd~~t~~~~~~v~~~ 351 (378)
+..+...|++|++..+.|...
T Consensus 169 s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECG
T ss_pred CCeEEEEECCCCCEEEEEECC
Confidence 779999999999988565544
No 223
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=30.14 E-value=2.9e+02 Score=24.52 Aligned_cols=139 Identities=15% Similarity=0.201 Sum_probs=68.3
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
+|+....+..+.|||..|++....-... ...+..+.+++.+. + ++... ....+.+|+..++. .
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~~h------~~~V~~v~~~~~~~-~-l~sgs-------~D~~i~iwd~~~~~--~ 184 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETGDFERTLKGH------TDSVQDISFDHSGK-L-LASCS-------ADMTIKLWDFQGFE--C 184 (410)
T ss_dssp EEEEEESSSCEEEEETTTCCCCEEECCC------SSCEEEEEECTTSS-E-EEEEE-------TTSCCCEEETTSSC--E
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecc------CCcEEEEEEcCCCC-E-EEEEe-------CCCeEEEEeCCCCc--e
Confidence 4444445678999999998765422211 23455566666433 2 22221 23456677776543 1
Q ss_pred eeccCCccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCCCCCCCCCCeeE-EE-EeCCeEE
Q 043816 191 IRVDFPYYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPHLENRDSGNLMY-MG-NFSGCLY 265 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~-l~-~~~G~L~ 265 (378)
+. .+... ...-.++.+ +|.... +...+ ..|..+|+.+... ..+.... . ... +. ..+|++.
T Consensus 185 ~~-~~~~h-~~~V~~v~~~p~~~~l~-s~s~D-----~~i~~wd~~~~~~~~~~~~h~------~-~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 185 IR-TMHGH-DHNVSSVSIMPNGDHIV-SASRD-----KTIKMWEVQTGYCVKTFTGHR------E-WVRMVRPNQDGTLI 249 (410)
T ss_dssp EE-CCCCC-SSCEEEEEECSSSSEEE-EEETT-----SEEEEEETTTCCEEEEEECCS------S-CEEEEEECTTSSEE
T ss_pred eE-EEcCC-CCCEEEEEEeCCCCEEE-EEeCC-----CeEEEEECCCCcEEEEEeCCC------c-cEEEEEECCCCCEE
Confidence 22 11100 000012322 344332 33322 3488899877643 2232211 1 222 22 2356776
Q ss_pred EEEecCCCCcEEEEEEcC
Q 043816 266 FSCFCDYPEPVDIWIMKE 283 (378)
Q Consensus 266 l~~~~~~~~~i~iW~l~~ 283 (378)
+.+..+. .+.+|.+..
T Consensus 250 ~s~s~D~--~v~vwd~~~ 265 (410)
T 1vyh_C 250 ASCSNDQ--TVRVWVVAT 265 (410)
T ss_dssp EEEETTS--CEEEEETTT
T ss_pred EEEcCCC--eEEEEECCC
Confidence 6666666 899998865
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=30.09 E-value=2.6e+02 Score=23.95 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=56.9
Q ss_pred CeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEE-EEeCCeEEEEEecCCCCcEEEEEEcC-ceee
Q 043816 210 GHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYM-GNFSGCLYFSCFCDYPEPVDIWIMKE-SWTK 287 (378)
Q Consensus 210 G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l-~~~~G~L~l~~~~~~~~~i~iW~l~~-~W~~ 287 (378)
|.+||..... ..|..+|+.+.+...+..|.. -..+ ...+|++.+.. .. .+.+|..+. ....
T Consensus 61 ~~l~~~d~~~------~~i~~~d~~~~~~~~~~~~~~-------v~~i~~~~dg~l~v~~--~~--gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 61 GTAWWFNILE------RELHELHLASGRKTVHALPFM-------GSALAKISDSKQLIAS--DD--GLFLRDTATGVLTL 123 (326)
T ss_dssp TEEEEEEGGG------TEEEEEETTTTEEEEEECSSC-------EEEEEEEETTEEEEEE--TT--EEEEEETTTCCEEE
T ss_pred CEEEEEECCC------CEEEEEECCCCcEEEEECCCc-------ceEEEEeCCCeEEEEE--CC--CEEEEECCCCcEEE
Confidence 7899986543 259999999887776655421 2223 33578877765 22 455554444 4332
Q ss_pred eEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEE
Q 043816 288 VFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQV 348 (378)
Q Consensus 288 ~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v 348 (378)
...... . .......-+.+.++|. +++.... .........|+.|| +++++ .+
T Consensus 124 ~~~~~~-~-~~~~~~~~i~~d~~G~-l~v~~~~----~~~~~~~~~l~~~~--~g~~~-~~ 174 (326)
T 2ghs_A 124 HAELES-D-LPGNRSNDGRMHPSGA-LWIGTMG----RKAETGAGSIYHVA--KGKVT-KL 174 (326)
T ss_dssp EECSST-T-CTTEEEEEEEECTTSC-EEEEEEE----TTCCTTCEEEEEEE--TTEEE-EE
T ss_pred EeeCCC-C-CCCCCCCCEEECCCCC-EEEEeCC----CcCCCCceEEEEEe--CCcEE-Ee
Confidence 221111 0 0112233355666776 4444200 00001235788888 56666 44
No 225
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=28.84 E-value=4.1e+02 Score=25.74 Aligned_cols=186 Identities=10% Similarity=0.113 Sum_probs=90.5
Q ss_pred EEeecCCceEEEEcCCCccee-ecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEE
Q 043816 112 IALKNGENDIALWNPSTKKHV-LLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRR 190 (378)
Q Consensus 112 l~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~ 190 (378)
|+++. ...+...+.-+.... .+|-.. .....++.||+..+ +|..... ....+..++......+.
T Consensus 9 Ll~s~-~~~I~~i~l~~~~~~~~~~~~~------~~~~~~l~~d~~~~--~lywtD~------~~~~I~r~~~~g~~~~~ 73 (628)
T 4a0p_A 9 LLFSR-RADIRRISLETNNNNVAIPLTG------VKEASALDFDVTDN--RIYWTDI------SLKTISRAFMNGSALEH 73 (628)
T ss_dssp EEEEE-TTEEEEEESSCTTCEEECCCCS------CSCEEEEEEETTTT--EEEEEET------TTTEEEEEETTSCSCEE
T ss_pred EEEEe-CCcEEEEECCCCCcceEEEcCC------CCceEEEEEECCCC--EEEEEEC------CCCeEEEEECCCCCcEE
Confidence 44443 445666666554433 334322 33567888888765 3333321 23455566665544444
Q ss_pred eeccCCccccCCCCceEE---CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCeeEEEEe--CCeEE
Q 043816 191 IRVDFPYYFSHPRDGTFA---RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNF--SGCLY 265 (378)
Q Consensus 191 ~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~~~--~G~L~ 265 (378)
+. .. .. ..-.++.+ +|.|||.-... ..|.++|+....-..+-. .... . -..+++. +|.|+
T Consensus 74 v~-~~--g~-~~P~GlAvD~~~~~LY~tD~~~------~~I~v~~~dG~~~~~l~~-~~l~---~-P~~iavdp~~G~lY 138 (628)
T 4a0p_A 74 VV-EF--GL-DYPEGMAVDWLGKNLYWADTGT------NRIEVSKLDGQHRQVLVW-KDLD---S-PRALALDPAEGFMY 138 (628)
T ss_dssp EE-CS--SC-SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSTTCEEEEC-SSCC---C-EEEEEEETTTTEEE
T ss_pred EE-eC--CC-CCcceEEEEeCCCEEEEEECCC------CEEEEEecCCCcEEEEEe-CCCC---C-cccEEEccCCCeEE
Confidence 33 11 11 11125555 58999974432 369999997654333311 1111 1 2234443 67887
Q ss_pred EEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeE
Q 043816 266 FSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRA 344 (378)
Q Consensus 266 l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~ 344 (378)
...... ...|....++. .-..+ +.. .....-+++...++.|++.. .....+..+|+++...
T Consensus 139 ~tD~g~-~~~I~r~~~dG~~~~~l--~~~-----~~~P~GlalD~~~~~LY~aD----------~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 139 WTEWGG-KPKIDRAAMDGSERTTL--VPN-----VGRANGLTIDYAKRRLYWTD----------LDTNLIESSNMLGLNR 200 (628)
T ss_dssp EEECSS-SCEEEEEETTSCSCEEE--ECS-----CSSEEEEEEETTTTEEEEEE----------TTTTEEEEEETTSCSC
T ss_pred EeCCCC-CCEEEEEeCCCCceEEE--ECC-----CCCcceEEEccccCEEEEEE----------CCCCEEEEEcCCCCce
Confidence 775421 12444444443 11111 111 11222345555566777774 3456777777766544
Q ss_pred E
Q 043816 345 A 345 (378)
Q Consensus 345 ~ 345 (378)
+
T Consensus 201 ~ 201 (628)
T 4a0p_A 201 E 201 (628)
T ss_dssp E
T ss_pred E
Confidence 4
No 226
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=28.52 E-value=2.7e+02 Score=23.60 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=52.4
Q ss_pred EEEEECCCceEeeecCCCCCCCCCCCeeEEE-----EeCCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceee
Q 043816 228 IVAFDLKSEEFFEVPLPHLENRDSGNLMYMG-----NFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYA 302 (378)
Q Consensus 228 il~fD~~~~~~~~i~~P~~~~~~~~~~~~l~-----~~~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~ 302 (378)
|..+|+..+....+........ ..... ..++.+.+.+..+. .+.+|.++. ......+.. .....
T Consensus 131 i~vwd~~~~~~~~~~~h~~~v~----~~~~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~-~~~~~~~~~----h~~~v 199 (319)
T 3frx_A 131 IKVWTIKGQCLATLLGHNDWVS----QVRVVPNEKADDDSVTIISAGNDK--MVKAWNLNQ-FQIEADFIG----HNSNI 199 (319)
T ss_dssp EEEEETTSCEEEEECCCSSCEE----EEEECCC------CCEEEEEETTS--CEEEEETTT-TEEEEEECC----CCSCE
T ss_pred EEEEECCCCeEEEEeccCCcEE----EEEEccCCCCCCCccEEEEEeCCC--EEEEEECCc-chhheeecC----CCCcE
Confidence 8888887665544432211110 11110 01233444444445 899999876 111222221 01123
Q ss_pred EEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 303 KALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 303 ~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
..+++.++|..|+.. ..++.+.+||+++++..
T Consensus 200 ~~~~~sp~g~~l~s~-----------~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 200 NTLTASPDGTLIASA-----------GKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEEEECTTSSEEEEE-----------ETTCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCEEEEE-----------eCCCeEEEEECCCCcEE
Confidence 446677788877777 47789999999988765
No 227
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=28.25 E-value=2.8e+02 Score=23.72 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=56.9
Q ss_pred EEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEE
Q 043816 227 LIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKA 304 (378)
Q Consensus 227 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 304 (378)
.|..+|+.+.... .+..... . -..+... +|++.+.+..+. .+.+|.++.. .....+.... .......
T Consensus 207 ~v~~wd~~~~~~~~~~~~h~~-----~-v~~v~~~p~~~~l~s~s~d~--~v~iwd~~~~-~~~~~~~~~~--~~~~v~~ 275 (340)
T 1got_B 207 SAKLWDVREGMCRQTFTGHES-----D-INAICFFPNGNAFATGSDDA--TCRLFDLRAD-QELMTYSHDN--IICGITS 275 (340)
T ss_dssp CEEEEETTTCSEEEEECCCSS-----C-EEEEEECTTSSEEEEEETTS--CEEEEETTTT-EEEEEECCTT--CCSCEEE
T ss_pred cEEEEECCCCeeEEEEcCCcC-----C-EEEEEEcCCCCEEEEEcCCC--cEEEEECCCC-cEEEEEccCC--cccceEE
Confidence 3888998765432 2222111 1 2223322 567666666666 8999998761 1122222211 1112344
Q ss_pred EEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 305 LAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 305 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+++.++|..++.. ..++.+.+||..+.+..
T Consensus 276 ~~~s~~g~~l~~g-----------~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 276 VSFSKSGRLLLAG-----------YDDFNCNVWDALKADRA 305 (340)
T ss_dssp EEECTTSSEEEEE-----------ETTSEEEEEETTTCCEE
T ss_pred EEECCCCCEEEEE-----------CCCCeEEEEEcccCcEe
Confidence 6777888888887 47889999999887765
No 228
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=28.17 E-value=4.2e+02 Score=25.64 Aligned_cols=67 Identities=9% Similarity=0.051 Sum_probs=39.7
Q ss_pred ccc-eEEeecCCceEEEEcCCCc---ceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEc
Q 043816 108 CNG-LIALKNGENDIALWNPSTK---KHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSL 183 (378)
Q Consensus 108 ~~G-ll~~~~~~~~~~V~NP~T~---~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 183 (378)
-+| .|++.. ...++++|..++ +...+.... .....+.+.|+++ + |+... ...+.+++.
T Consensus 118 pDg~~l~~~~-~~~i~~~d~~~~~~~~~~~l~~~~-------~~~~~~~~SPDG~-~-la~~~--------~~~i~~~d~ 179 (741)
T 2ecf_A 118 PDAQRLLFPL-GGELYLYDLKQEGKAAVRQLTHGE-------GFATDAKLSPKGG-F-VSFIR--------GRNLWVIDL 179 (741)
T ss_dssp TTSSEEEEEE-TTEEEEEESSSCSTTSCCBCCCSS-------SCEEEEEECTTSS-E-EEEEE--------TTEEEEEET
T ss_pred CCCCEEEEEe-CCcEEEEECCCCCcceEEEcccCC-------cccccccCCCCCC-E-EEEEe--------CCcEEEEec
Confidence 344 444444 378999999998 666654432 2344566666544 2 22222 126888888
Q ss_pred CCCceEEee
Q 043816 184 KSNSSRRIR 192 (378)
Q Consensus 184 ~t~~W~~~~ 192 (378)
.++..+.+.
T Consensus 180 ~~g~~~~~~ 188 (741)
T 2ecf_A 180 ASGRQMQLT 188 (741)
T ss_dssp TTTEEEECC
T ss_pred CCCCEEEec
Confidence 887766554
No 229
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.36 E-value=63 Score=21.61 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=20.6
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCC
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFW 138 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~ 138 (378)
+......+.+.|.+||.|++.+.--|..
T Consensus 22 W~~v~T~dGR~fyyN~~Tk~S~WekP~e 49 (73)
T 2dk7_A 22 WCVVWTGDERVFFYNPTTRLSMWDRPDD 49 (73)
T ss_dssp CEEEEESSSCEEEEETTTTEECSSCCTT
T ss_pred cEEEECCCCCEEEecCcccceeccCChH
Confidence 4455556778999999999988754444
No 230
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=27.04 E-value=2.9e+02 Score=23.42 Aligned_cols=190 Identities=13% Similarity=0.145 Sum_probs=92.6
Q ss_pred ccceEEe-ecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCC
Q 043816 108 CNGLIAL-KNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSN 186 (378)
Q Consensus 108 ~~Gll~~-~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 186 (378)
.+|-.++ ...+..+.|||..|++...--... ...+..+.+++... .++... ....+.+++....
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h------~~~v~~~~~~~~~~--~l~s~s-------~D~~i~vwd~~~~ 139 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGH------KSDVMSVDIDKKAS--MIISGS-------RDKTIKVWTIKGQ 139 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEECTTSC--EEEEEE-------TTSCEEEEETTSC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccC------CCcEEEEEEcCCCC--EEEEEe-------CCCeEEEEECCCC
Confidence 3554444 445678999999998765321111 23445556665432 222222 2345677777644
Q ss_pred ceEEeeccCCcc---ccC-CCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-
Q 043816 187 SSRRIRVDFPYY---FSH-PRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF- 260 (378)
Q Consensus 187 ~W~~~~~~~p~~---~~~-~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~- 260 (378)
.-.... .-... ... ......-++. +.+....+ ..|..+|+.+.+... +... ...-..+...
T Consensus 140 ~~~~~~-~h~~~v~~~~~~~~~~~~~~~~-~l~s~~~d-----~~i~~wd~~~~~~~~~~~~h------~~~v~~~~~sp 206 (319)
T 3frx_A 140 CLATLL-GHNDWVSQVRVVPNEKADDDSV-TIISAGND-----KMVKAWNLNQFQIEADFIGH------NSNINTLTASP 206 (319)
T ss_dssp EEEEEC-CCSSCEEEEEECCC------CC-EEEEEETT-----SCEEEEETTTTEEEEEECCC------CSCEEEEEECT
T ss_pred eEEEEe-ccCCcEEEEEEccCCCCCCCcc-EEEEEeCC-----CEEEEEECCcchhheeecCC------CCcEEEEEEcC
Confidence 322222 00000 000 0000011222 23333322 238889987765432 2211 1102233333
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
+|++.+.+..+. .+.||.+... ..+..+... ....-+++.++|..+... ....+.+|+++
T Consensus 207 ~g~~l~s~~~dg--~i~iwd~~~~-~~~~~~~~~-----~~v~~~~~sp~~~~la~~------------~~~~i~v~~~~ 266 (319)
T 3frx_A 207 DGTLIASAGKDG--EIMLWNLAAK-KAMYTLSAQ-----DEVFSLAFSPNRYWLAAA------------TATGIKVFSLD 266 (319)
T ss_dssp TSSEEEEEETTC--EEEEEETTTT-EEEEEEECC-----SCEEEEEECSSSSEEEEE------------ETTEEEEEEET
T ss_pred CCCEEEEEeCCC--eEEEEECCCC-cEEEEecCC-----CcEEEEEEcCCCCEEEEE------------cCCCcEEEEeC
Confidence 577666666666 9999998761 223333331 123346777788766665 44567888887
Q ss_pred CCeEE
Q 043816 341 NQRAA 345 (378)
Q Consensus 341 t~~~~ 345 (378)
++...
T Consensus 267 ~~~~~ 271 (319)
T 3frx_A 267 PQYLV 271 (319)
T ss_dssp TEEEE
T ss_pred cCeee
Confidence 76654
No 231
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=26.97 E-value=3.1e+02 Score=24.88 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=38.8
Q ss_pred CeEEEEEecCCCCcEEEEEEcCceeee-EEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECC
Q 043816 262 GCLYFSCFCDYPEPVDIWIMKESWTKV-FSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQ 340 (378)
Q Consensus 262 G~L~l~~~~~~~~~i~iW~l~~~W~~~-~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~ 340 (378)
+.+.+.+..+. .+.||.++.. ... ..... .....-++..++|..|+.. ..++.+..||++
T Consensus 162 ~~~las~s~Dg--~v~iwD~~~~-~~~~~~~~~-----~~~v~~v~wspdg~~lasg-----------s~dg~v~iwd~~ 222 (434)
T 2oit_A 162 PSMVAVCLADG--SIAVLQVTET-VKVCATLPS-----TVAVTSVCWSPKGKQLAVG-----------KQNGTVVQYLPT 222 (434)
T ss_dssp TTEEEEEETTS--CEEEEEESSS-EEEEEEECG-----GGCEEEEEECTTSSCEEEE-----------ETTSCEEEECTT
T ss_pred CCEEEEEECCC--eEEEEEcCCC-cceeeccCC-----CCceeEEEEcCCCCEEEEE-----------cCCCcEEEEccC
Confidence 44555555555 8999998762 111 11111 1123346667788888877 467889999998
Q ss_pred CCeEE
Q 043816 341 NQRAA 345 (378)
Q Consensus 341 t~~~~ 345 (378)
.+...
T Consensus 223 ~~~~~ 227 (434)
T 2oit_A 223 LQEKK 227 (434)
T ss_dssp CCEEE
T ss_pred Ccccc
Confidence 44443
No 232
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=26.19 E-value=3.2e+02 Score=23.64 Aligned_cols=97 Identities=14% Similarity=0.236 Sum_probs=55.1
Q ss_pred EEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEE
Q 043816 227 LIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKA 304 (378)
Q Consensus 227 ~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 304 (378)
.|..+|+.+.+... +..... . -..+... +|.+.+.+..+. .+.+|.+... ..+..+.... .......
T Consensus 221 ~v~~wd~~~~~~~~~~~~h~~-----~-v~~v~~~p~~~~l~s~s~D~--~v~lwd~~~~-~~~~~~~~~~--~~~~~~~ 289 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQAFETHES-----D-VNSVRYYPSGDAFASGSDDA--TCRLYDLRAD-REVAIYSKES--IIFGASS 289 (354)
T ss_dssp CEEEEETTTCCEEEEECCCSS-----C-EEEEEECTTSSEEEEEETTS--CEEEEETTTT-EEEEEECCTT--CCSCEEE
T ss_pred eEEEEECCCCcEEEEecCCCC-----C-eEEEEEeCCCCEEEEEeCCC--eEEEEECCCC-cEEEEEcCCC--cccceeE
Confidence 38889988765432 222111 1 2223222 566666666655 9999998761 1111222110 0112334
Q ss_pred EEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 305 LAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 305 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
+.+.++|..++.. ..++.+.+||+.+++..
T Consensus 290 ~~~s~~g~~l~~g-----------~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 290 VDFSLSGRLLFAG-----------YNDYTINVWDVLKGSRV 319 (354)
T ss_dssp EEECTTSSEEEEE-----------ETTSCEEEEETTTCSEE
T ss_pred EEEeCCCCEEEEE-----------ECCCcEEEEECCCCceE
Confidence 6667788887777 47789999999877654
No 233
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=25.79 E-value=1.8e+02 Score=25.81 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=41.2
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEec--Ccccc-ceeeEEEEEeecC-CEEEEeeccCCCccccccCCcEEEE
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAG--GVFGI-FTYAKALAYSKSG-DKVLVDKFLYDEDEDEGINKWELDW 336 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~--~~~~~-~~~~~~~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~l~~ 336 (378)
+|++.+.+ .+. .+.||.++..-.....+.. ..+.. .....-+++.++| ..++.. ..++.+..
T Consensus 188 ~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-----------~~dg~i~i 253 (447)
T 3dw8_B 188 DYETYLSA-DDL--RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-----------SSKGTIRL 253 (447)
T ss_dssp TSSEEEEE-CSS--EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-----------ETTSCEEE
T ss_pred CCCEEEEe-CCC--eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE-----------eCCCeEEE
Confidence 56655554 444 9999999741111122221 11111 1234456677777 777777 47789999
Q ss_pred EECCCCeE
Q 043816 337 YDLQNQRA 344 (378)
Q Consensus 337 yd~~t~~~ 344 (378)
||+++++.
T Consensus 254 wd~~~~~~ 261 (447)
T 3dw8_B 254 CDMRASAL 261 (447)
T ss_dssp EETTTCSS
T ss_pred EECcCCcc
Confidence 99998774
No 234
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.50 E-value=1.1e+02 Score=22.96 Aligned_cols=40 Identities=5% Similarity=-0.202 Sum_probs=25.5
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEee-----eCCCCCEEEEEEE
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGY-----DAVSDDYKVVRLI 166 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~-----d~~~~~ykVv~~~ 166 (378)
.++++||.|+.|...-.. ......+.+ |...+.|+|+...
T Consensus 21 ~Vm~~D~~~~~W~p~~~g-------~ls~v~v~~~~~~~d~~~~~yrI~~~~ 65 (126)
T 2jp2_A 21 VVMTRDDSSGGWFPQEGG-------GISRVGVCKVMHPEGNGRSGFLIHGER 65 (126)
T ss_dssp EEEEECTTSSSSEECSCC-------SCEEEEEECCBCTTCSSCBCEEEEEEE
T ss_pred EEeeEcCCCCCEeeCCCC-------CcccEEEEEecCCCCCCCCEEEEEEEE
Confidence 588999999988654332 122233333 4467789998876
No 235
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=24.46 E-value=4.6e+02 Score=24.84 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
+|++.++...+. .+.+|.++. .......... .....-+++.++|..|+.. ..+..+..||.
T Consensus 459 dg~~lasgs~D~--~v~lwd~~~~~~~~~~~~~h-----~~~v~~v~fspdg~~las~-----------s~d~~v~~w~~ 520 (611)
T 1nr0_A 459 DKQFVAVGGQDS--KVHVYKLSGASVSEVKTIVH-----PAEITSVAFSNNGAFLVAT-----------DQSRKVIPYSV 520 (611)
T ss_dssp TSCEEEEEETTS--EEEEEEEETTEEEEEEEEEC-----SSCEEEEEECTTSSEEEEE-----------ETTSCEEEEEG
T ss_pred CCCEEEEeCCCC--eEEEEEccCCceeeeeccCC-----CCceEEEEECCCCCEEEEE-----------cCCCCEEEEEc
Confidence 577777666666 999999977 5444333332 1123446677788777666 36677788887
Q ss_pred CC
Q 043816 340 QN 341 (378)
Q Consensus 340 ~t 341 (378)
++
T Consensus 521 ~~ 522 (611)
T 1nr0_A 521 AN 522 (611)
T ss_dssp GG
T ss_pred CC
Confidence 66
No 236
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=24.36 E-value=2e+02 Score=25.56 Aligned_cols=110 Identities=5% Similarity=-0.065 Sum_probs=56.9
Q ss_pred cceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCC-CCCEEEEEEEEecCCCCcccEEEEEEcCCCc
Q 043816 109 NGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAV-SDDYKVVRLIQFGRGKVEYTEIAVYSLKSNS 187 (378)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~-~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~ 187 (378)
+|+|++...+..++-.|..||+.+.--...... .......... .+. .++.+.. .....+..|+.+++.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~-----p~~~~~~~~~~~~~-~~~vv~p-----~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQ-----PLIEIQEPSRLETY-ETLIIEP-----FGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSC-----CSEECCCSCTTTSS-EEEEECC-----STTTEEEEEETTTEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccC-----CcEEecCCccccCC-cEEEEEE-----CCCCEEEEEECCCCc
Confidence 567777777777888888888776532211000 0000000000 111 2222210 024567788888887
Q ss_pred eEEeeccCCcccc-----CCCCceE-------ECCeeEEEEEeCCCCCCCCEEEEEECCCce
Q 043816 188 SRRIRVDFPYYFS-----HPRDGTF-------ARGHVHWLVLNEPEGYNGDLIVAFDLKSEE 237 (378)
Q Consensus 188 W~~~~~~~p~~~~-----~~~~~v~-------~~G~lYwl~~~~~~~~~~~~il~fD~~~~~ 237 (378)
|+... ..+.... ....+|. .+|.+|.-...+ .+.++|+.+.+
T Consensus 79 ~~~~~-~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g-------~l~ald~~tG~ 132 (339)
T 2be1_A 79 QKLPL-SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT-------IMYTINMLNGE 132 (339)
T ss_dssp EEEEE-EHHHHHTTCSEEEECC----------CCEEEEECEEEE-------EEEEEETTTCC
T ss_pred EEeee-ccccceeccccccCCCceeecccccccCCEEEEEecCC-------EEEEEECCCCc
Confidence 76533 3332111 1122444 789999887765 49999997653
No 237
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=24.18 E-value=4.3e+02 Score=24.47 Aligned_cols=184 Identities=10% Similarity=0.105 Sum_probs=90.7
Q ss_pred ceEEEEcCCCccee-ecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCCc
Q 043816 119 NDIALWNPSTKKHV-LLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPY 197 (378)
Q Consensus 119 ~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~ 197 (378)
..+.++| +++.. .+... ......+.+.+... +.++... ....+.+|+..++.-...- ..
T Consensus 142 ~~v~~~d--~~~~~~~~~~~-------~~~v~~~~~~~~~~-~~l~~~~-------~d~~v~vwd~~~~~~~~~~---~~ 201 (615)
T 1pgu_A 142 GVFISWD--SGNSLGEVSGH-------SQRINACHLKQSRP-MRSMTVG-------DDGSVVFYQGPPFKFSASD---RT 201 (615)
T ss_dssp EEEEETT--TCCEEEECCSC-------SSCEEEEEECSSSS-CEEEEEE-------TTTEEEEEETTTBEEEEEE---CS
T ss_pred cEEEEEE--CCCcceeeecC-------CccEEEEEECCCCC-cEEEEEe-------CCCcEEEEeCCCcceeeee---cc
Confidence 4688888 44333 33221 23455566766543 3444333 2457888887665422211 11
Q ss_pred cccC--CCCceEE--C-CeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEeCCeEEEEEecC
Q 043816 198 YFSH--PRDGTFA--R-GHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNFSGCLYFSCFCD 271 (378)
Q Consensus 198 ~~~~--~~~~v~~--~-G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~ 271 (378)
.... .-.++.+ + |.....+..+ ..|..+|+.+.+... +..+.... ...-..+...+|++.+++..+
T Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~d 273 (615)
T 1pgu_A 202 HHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEFLKYIEDDQEPV--QGGIFALSWLDSQKFATVGAD 273 (615)
T ss_dssp SSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCEEEECCBTTBCC--CSCEEEEEESSSSEEEEEETT
T ss_pred cCCCCceEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCEeEEeccccccc--CCceEEEEEcCCCEEEEEcCC
Confidence 0000 1112333 3 5544444332 238999987765433 31210011 110222322277777777666
Q ss_pred CCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEE
Q 043816 272 YPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAA 345 (378)
Q Consensus 272 ~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~ 345 (378)
. .+.+|.++. ...+..+.............+. +.+++.++.. ..++.+..||+++++..
T Consensus 274 ~--~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-----------~~~g~i~~~d~~~~~~~ 332 (615)
T 1pgu_A 274 A--TIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVV-ATGNGRIISL-----------SLDGTLNFYELGHDEVL 332 (615)
T ss_dssp S--EEEEEETTT-TEEEEEEECCTTCGGGCEEEEE-EEETTEEEEE-----------ETTSCEEEEETTEEEEE
T ss_pred C--cEEEEECCC-CcEEEEEcCCCCcccCceeEEE-eCCCCeEEEE-----------ECCCCEEEEECCCCcEE
Confidence 5 899999876 1223333331000001111122 2377777777 47889999999986554
No 238
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=24.15 E-value=3.4e+02 Score=23.21 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=38.8
Q ss_pred CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCcc-------ccceeeEEEEEeecCCEEEEeeccCCCccccccCCc
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVF-------GIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~-------~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 332 (378)
+|.+. +...+. .+.+|.+.. .-..+..+..... +......-++++++|..|+.. ..++
T Consensus 266 ~~~~l-a~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-----------~~Dg 331 (343)
T 2xzm_R 266 KLQWV-AVGTDQ--GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG-----------FTDG 331 (343)
T ss_dssp SSCEE-EEEESS--CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE-----------ETTS
T ss_pred CCCEE-EEECCC--CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe-----------cCCc
Confidence 34443 344444 799998865 2222223332100 111223446777888888877 4788
Q ss_pred EEEEEECCCC
Q 043816 333 ELDWYDLQNQ 342 (378)
Q Consensus 333 ~l~~yd~~t~ 342 (378)
.+..||++++
T Consensus 332 ~v~~w~~~~g 341 (343)
T 2xzm_R 332 VIRTFSFETS 341 (343)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEcc
Confidence 9999987654
No 239
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=24.00 E-value=3.7e+02 Score=23.64 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=40.3
Q ss_pred CCeEEEEEecCCCCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCC-EEEEeeccCCCccccccCCcEEEEEEC
Q 043816 261 SGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGD-KVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 261 ~G~L~l~~~~~~~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
+|++.+.+..+. ++.||.+...=........ .....-+++++++. .++.. ..++.+..||+
T Consensus 155 d~~~las~s~D~--tv~~Wd~~~~~~~~~~~~~-----~~~v~~v~~~p~~~~~l~~~-----------~~d~~v~~wd~ 216 (393)
T 4gq1_A 155 AEQVIASVGDDC--TLIIWRLTDEGPILAGYPL-----SSPGISVQFRPSNPNQLIVG-----------ERNGNIRIFDW 216 (393)
T ss_dssp EEEEEEEEETTS--EEEEEEEETTEEEEEEEEC-----SSCEEEEEEETTEEEEEEEE-----------ETTSEEEEEET
T ss_pred CCCEEEEEECCC--eEEEEECCCCceeeeecCC-----CCCcEEEEECCCCCceEEec-----------CCCCEEEEEEC
Confidence 677777777776 9999998761112222222 11223356666654 44444 46789999999
Q ss_pred CCCeEE
Q 043816 340 QNQRAA 345 (378)
Q Consensus 340 ~t~~~~ 345 (378)
++++..
T Consensus 217 ~t~~~~ 222 (393)
T 4gq1_A 217 TLNLSA 222 (393)
T ss_dssp TCCC--
T ss_pred CCCccc
Confidence 988765
No 240
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=23.58 E-value=4e+02 Score=23.85 Aligned_cols=203 Identities=8% Similarity=-0.088 Sum_probs=94.1
Q ss_pred eEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCC--CCCEEEEEEEEecCCCCcccEEEEEEcCCCce
Q 043816 111 LIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAV--SDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSS 188 (378)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~--~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W 188 (378)
+|+.......+++++..+++....+.... ..+......+.+.|. .+.+- .... ....+.+|+..++.-
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~l--~s~~------~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPI--LGHVSMLTDVHLIKDSDGHQFI--ITSD------RDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCS--EECSSCEEEEEEEECTTSCEEE--EEEE------TTSCEEEEEESCTTC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceee--ecccCceEEEEEcCCCCCCcEE--EEEc------CCCcEEEEECCCCce
Confidence 44444445678888877766442110000 001234555666665 12222 2221 234677888776643
Q ss_pred EEeeccCCccccCCCCceEE-CCeeEEEEEeCCCCCCCCEEEEEECCCceE-eeecCCC--------------CC-----
Q 043816 189 RRIRVDFPYYFSHPRDGTFA-RGHVHWLVLNEPEGYNGDLIVAFDLKSEEF-FEVPLPH--------------LE----- 247 (378)
Q Consensus 189 ~~~~~~~p~~~~~~~~~v~~-~G~lYwl~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~--------------~~----- 247 (378)
...- .. .....-.++.+ +|.+...+..+ ..|..+|+.+.+. ..+..+. ..
T Consensus 233 ~~~~--~~-~h~~~v~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 233 VDKW--LF-GHKHFVSSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp EEEE--CC-CCSSCEEEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred eeee--ec-CCCCceEEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence 2211 00 00001112323 56655544432 2589999987653 3333210 00
Q ss_pred -CCCCCCeeEEEEe-CCeEEEEEe-cCCCCcEEEEEE--cC--ceeeeEEEecCccccceeeEEEEEeecCCEEEEeecc
Q 043816 248 -NRDSGNLMYMGNF-SGCLYFSCF-CDYPEPVDIWIM--KE--SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFL 320 (378)
Q Consensus 248 -~~~~~~~~~l~~~-~G~L~l~~~-~~~~~~i~iW~l--~~--~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~ 320 (378)
..+.. -..+... +|+..++.. ... .+.||.+ .. .+..+..+... ....-+++.+ ++.++.....
T Consensus 304 ~~~~~~-v~~i~~~~~~~~l~~~~~~d~--~i~iw~~~~~~~~~l~~~~~~~~~-----~~v~~~~~~~-~~~~v~~~~~ 374 (450)
T 2vdu_B 304 DIIEFA-VSKIIKSKNLPFVAFFVEATK--CIIILEMSEKQKGDLALKQIITFP-----YNVISLSAHN-DEFQVTLDNK 374 (450)
T ss_dssp -CBCCC-EEEEEECSSSSEEEEEETTCS--EEEEEEECSSSTTCEEEEEEEECS-----SCEEEEEEET-TEEEEEECCT
T ss_pred ccceEE-EEEEEEeCCCCEEEEEECCCC--eEEEEEeccCCCCceeeccEeccC-----CceEEEEecC-CcEEEEEecc
Confidence 00001 1223222 466666655 344 9999999 33 45666666652 1223345554 3344443100
Q ss_pred CCCccccc--cCCcEEEEEECCCCeEE
Q 043816 321 YDEDEDEG--INKWELDWYDLQNQRAA 345 (378)
Q Consensus 321 ~~~~~~~~--~~~~~l~~yd~~t~~~~ 345 (378)
+ ..+ ...-.++.++.++++++
T Consensus 375 ---~-~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 375 ---E-SSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp ---T-CCSSCCCSEEEEEEETTTTEEE
T ss_pred ---c-CCCCCCcceEEEEEEcCCCeEE
Confidence 0 000 01127888899998886
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=22.30 E-value=5.7e+02 Score=25.19 Aligned_cols=208 Identities=8% Similarity=-0.002 Sum_probs=0.0
Q ss_pred eeEeecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEE
Q 043816 102 TPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVY 181 (378)
Q Consensus 102 ~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vy 181 (378)
..+.--.+|-|-+......+..+||.++++..+...+.........+..+..|..+. +.+.. ....+..|
T Consensus 313 ~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~----lWiGt------~~~Gl~~~ 382 (795)
T 4a2l_A 313 RSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN----LWIGT------NDGGLNLY 382 (795)
T ss_dssp EEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC----EEEEE------SSSCEEEE
T ss_pred EEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC----EEEEE------CCCCeEEE
Q ss_pred EcCCCceEEeeccCC-----ccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEeeecCCCCCCCCCCCe
Q 043816 182 SLKSNSSRRIRVDFP-----YYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNL 254 (378)
Q Consensus 182 ss~t~~W~~~~~~~p-----~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 254 (378)
+..++.++... ..+ ......-.+++. +|.+.|++....+ |..+|..++++..+........... -
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G------l~~~d~~~~~~~~~~~~~~~l~~~~-v 454 (795)
T 4a2l_A 383 NPITQRFTSYT-LQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG------LSILHRNSGQVENFNQRNSQLVNEN-V 454 (795)
T ss_dssp CTTTCCEEEEC-CC------CCSCSCEEEEEEETTTTEEEEEETTTE------EEEEETTTCCEEEECTTTSCCSCSC-E
T ss_pred cCCCCcEEEEe-cCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc------eeEEeCCCCcEEEeecCCCCcCCCe-e
Q ss_pred eEEEEe-CCeEEEEEecCCCCcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCc
Q 043816 255 MYMGNF-SGCLYFSCFCDYPEPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332 (378)
Q Consensus 255 ~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 332 (378)
..+.+. +|.|.+.+. . .+.++..+. .|........+.-........+....+|.+.+-. . .
T Consensus 455 ~~i~~d~~g~lwigt~--~--Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt------------~-~ 517 (795)
T 4a2l_A 455 YAILPDGEGNLWLGTL--S--ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG------------E-E 517 (795)
T ss_dssp EEEEECSSSCEEEEES--S--CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE------------S-S
T ss_pred EEEEECCCCCEEEEec--C--ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe------------C-C
Q ss_pred EEEEEECCCCeE
Q 043816 333 ELDWYDLQNQRA 344 (378)
Q Consensus 333 ~l~~yd~~t~~~ 344 (378)
.|+.||++++++
T Consensus 518 Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 518 GLSVFKQEGLDI 529 (795)
T ss_dssp CEEEEEEETTEE
T ss_pred ceEEEeCCCCeE
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=22.06 E-value=3.7e+02 Score=22.92 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=65.4
Q ss_pred EECCeeEEEEEeCCCCCCCCEEEEEECCCce-EeeecCCCCCCCCCCCeeEEEEeCCeEEEEEecCCCCcEEEEEEcC-c
Q 043816 207 FARGHVHWLVLNEPEGYNGDLIVAFDLKSEE-FFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKE-S 284 (378)
Q Consensus 207 ~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~ 284 (378)
..++.+|-+.... ..+.+||.++-+ -..++.+.. -.-|+.-+++|++... .. .|++++- .
T Consensus 103 ~~g~~Ly~ltw~~------~~v~V~D~~Tl~~~~ti~~~~e-------GwGLt~Dg~~L~vSdG-s~----~l~~iDp~T 164 (268)
T 3nok_A 103 SDGERLYQLTWTE------GLLFTWSGMPPQRERTTRYSGE-------GWGLCYWNGKLVRSDG-GT----MLTFHEPDG 164 (268)
T ss_dssp ECSSCEEEEESSS------CEEEEEETTTTEEEEEEECSSC-------CCCEEEETTEEEEECS-SS----EEEEECTTT
T ss_pred EeCCEEEEEEccC------CEEEEEECCcCcEEEEEeCCCc-------eeEEecCCCEEEEECC-CC----EEEEEcCCC
Confidence 3456888876543 259999998754 455666532 2234444566766642 11 4666654 4
Q ss_pred eeeeEEEecCccc-cceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEECCCCeEEEEEEEe
Q 043816 285 WTKVFSFAGGVFG-IFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVH 351 (378)
Q Consensus 285 W~~~~~i~~~~~~-~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~~t~~~~~~v~~~ 351 (378)
=..+.+|....-+ ......-+. +.+| .|+... .....+...|++|++..+.|...
T Consensus 165 ~~v~~~I~V~~~g~~v~~lNeLe-~~dG-~lyanv----------w~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 165 FALVGAVQVKLRGQPVELINELE-CANG-VIYANI----------WHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp CCEEEEEECEETTEECCCEEEEE-EETT-EEEEEE----------TTCSEEEEECTTTCBEEEEEECH
T ss_pred CeEEEEEEeCCCCcccccccccE-EeCC-EEEEEE----------CCCCeEEEEeCCCCcEEEEEECC
Confidence 4555666651111 111111122 2255 577663 25779999999999988566543
No 243
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=21.87 E-value=3.7e+02 Score=22.83 Aligned_cols=174 Identities=11% Similarity=0.142 Sum_probs=85.8
Q ss_pred CCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcCCCceEEeeccCC
Q 043816 117 GENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFP 196 (378)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 196 (378)
....+.++|..+++....-... ......+.+.|.+ .+-+.+- ....+.+|+.+++.-... +.
T Consensus 142 ~dg~v~i~~~~~~~~~~~~~~~------~~~v~~~~~spdg-~~lasg~--------~dg~i~iwd~~~~~~~~~---~~ 203 (321)
T 3ow8_A 142 HVGKVNIFGVESGKKEYSLDTR------GKFILSIAYSPDG-KYLASGA--------IDGIINIFDIATGKLLHT---LE 203 (321)
T ss_dssp TTSEEEEEETTTCSEEEEEECS------SSCEEEEEECTTS-SEEEEEE--------TTSCEEEEETTTTEEEEE---EC
T ss_pred CCCcEEEEEcCCCceeEEecCC------CceEEEEEECCCC-CEEEEEc--------CCCeEEEEECCCCcEEEE---Ec
Confidence 4456777777666544221111 1234455666643 2322221 234678888887642111 11
Q ss_pred ccccCCCCceEE--CCeeEEEEEeCCCCCCCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEEEEe-CCeEEEEEecCC
Q 043816 197 YYFSHPRDGTFA--RGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYMGNF-SGCLYFSCFCDY 272 (378)
Q Consensus 197 ~~~~~~~~~v~~--~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l~~~-~G~L~l~~~~~~ 272 (378)
. ....-.++.+ +|.+... ...+ ..|..+|+.+..... +...... -..+... +|+..+.+..+.
T Consensus 204 ~-h~~~v~~l~~spd~~~l~s-~s~d-----g~i~iwd~~~~~~~~~~~~h~~~------v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 204 G-HAMPIRSLTFSPDSQLLVT-ASDD-----GYIKIYDVQHANLAGTLSGHASW------VLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp C-CSSCCCEEEECTTSCEEEE-ECTT-----SCEEEEETTTCCEEEEECCCSSC------EEEEEECTTSSEEEEEETTS
T ss_pred c-cCCceeEEEEcCCCCEEEE-EcCC-----CeEEEEECCCcceeEEEcCCCCc------eEEEEECCCCCEEEEEeCCC
Confidence 0 0001112333 4543332 2222 238889987655432 2221111 2233333 566655555555
Q ss_pred CCcEEEEEEcCceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC
Q 043816 273 PEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL 339 (378)
Q Consensus 273 ~~~i~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~ 339 (378)
.+.||.++. ...+..+... .....-+++.++|..|+.. ..++.+.+||.
T Consensus 271 --~v~iwd~~~-~~~~~~~~~h----~~~v~~v~~s~~g~~l~s~-----------~~d~~i~vwd~ 319 (321)
T 3ow8_A 271 --SVKVWDVGT-RTCVHTFFDH----QDQVWGVKYNGNGSKIVSV-----------GDDQEIHIYDC 319 (321)
T ss_dssp --CEEEEETTT-TEEEEEECCC----SSCEEEEEECTTSSEEEEE-----------ETTCCEEEEEC
T ss_pred --cEEEEeCCC-CEEEEEEcCC----CCcEEEEEECCCCCEEEEE-----------eCCCeEEEEeC
Confidence 899998865 1223333320 1123346667788877776 46778888875
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=21.64 E-value=4.9e+02 Score=24.20 Aligned_cols=112 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCCEEEEEECCCceEee-ecCCCCCCCCCCCeeEE-EEeCCeEEEEEec-----CCCCcEEEEEEcC-ceeeeEEEec--
Q 043816 224 NGDLIVAFDLKSEEFFE-VPLPHLENRDSGNLMYM-GNFSGCLYFSCFC-----DYPEPVDIWIMKE-SWTKVFSFAG-- 293 (378)
Q Consensus 224 ~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~l-~~~~G~L~l~~~~-----~~~~~i~iW~l~~-~W~~~~~i~~-- 293 (378)
....|.++|+.+.+-.. |+++..... .. .+.+ ..-+|+..++... ... ++.+|..++ .|.....|+.
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~-P~-~i~f~~~Pdg~~aYV~~e~~~~~Lss-~V~v~~~d~g~~~~~~vIdi~~ 302 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRM-AL-ELRPLHDPTKLMGFINMVVSLKDLSS-SIWLWFYEDGKWNAEKVIEIPA 302 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEE-EE-EEEECSSTTCCEEEEEEEEETTTCCE-EEEEEEEETTEEEEEEEEEECC
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCc-cc-eeEeeECCCCCEEEEEEeeeccCCCc-eEEEEEecCCceeEEEEEeCCC
Q ss_pred Ccccc------------ceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEEC-CCCeEEEEEE
Q 043816 294 GVFGI------------FTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDL-QNQRAAGQVT 349 (378)
Q Consensus 294 ~~~~~------------~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd~-~t~~~~~~v~ 349 (378)
..... .....-+.++.+|..|++.+ ...+.+.+||+ +..+.+ .++
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSn----------rg~d~VavfdV~d~~~~~-lv~ 360 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSL----------WGIGEVRQYDISNPFKPV-LTG 360 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEE----------TTTTEEEEEECSSTTSCE-EEE
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEe----------CCCCEEEEEEecCCCCcE-EEE
No 245
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=21.28 E-value=98 Score=22.82 Aligned_cols=40 Identities=10% Similarity=-0.108 Sum_probs=22.1
Q ss_pred eEEEEcCCCcceeecCCCCCCCCCCCceeeEEee-----eCCCCCEEEEEEE
Q 043816 120 DIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGY-----DAVSDDYKVVRLI 166 (378)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~-----d~~~~~ykVv~~~ 166 (378)
.++++||.|+.|...-.. ..+...+.+ |...+.|+|+...
T Consensus 12 ~V~~~d~~~~~W~p~~~g-------~ls~v~i~~~~~~~d~~~~~yrIv~~~ 56 (118)
T 1xod_A 12 VVMTRDDSSGGWLQLGGG-------GLSSVTVSKTLQPGDSGGTEFLVHGER 56 (118)
T ss_dssp EEEEECSSSSCEEEGGGC-------CCEEEEEECC---------CCEEEEEE
T ss_pred EEeeEcCCCCCEeeCCCC-------CcccEEEEEecCcCCCCCCEEEEEEEE
Confidence 588899999988654322 122222333 4456789988765
No 246
>2w8x_A ION-channel modulator raklp; salivary gland, kunitz domains, maxik channel activation, sulphur SAD, membrane protein; 1.60A {Rhipicephalus appendiculatus}
Probab=21.10 E-value=89 Score=19.39 Aligned_cols=21 Identities=19% Similarity=0.182 Sum_probs=16.9
Q ss_pred cCCcEEEEEECCCCeEEEEEEE
Q 043816 329 INKWELDWYDLQNQRAAGQVTV 350 (378)
Q Consensus 329 ~~~~~l~~yd~~t~~~~~~v~~ 350 (378)
.....+..||++|++.+ +=..
T Consensus 26 rhsdqlwhynlrtnrce-rggy 46 (72)
T 2w8x_A 26 RHSDQLWHYNLRTNRCE-RGGY 46 (72)
T ss_dssp CEEEEEEEEETTTTEEE-EEEE
T ss_pred ccchhhhhhhcccchhc-cCCc
Confidence 45678999999999999 6443
No 247
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=20.03 E-value=1.1e+02 Score=19.99 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=15.7
Q ss_pred CCcEEEEEECCCCeEEEEEE
Q 043816 330 NKWELDWYDLQNQRAAGQVT 349 (378)
Q Consensus 330 ~~~~l~~yd~~t~~~~~~v~ 349 (378)
..-+++.||.++|.++ -++
T Consensus 38 g~iKIykyde~tNeI~-LkK 56 (72)
T 3kvp_A 38 GYIKIYEYNESRNEVK-LKK 56 (72)
T ss_dssp TEEEEEEEETTTTEEE-EEE
T ss_pred CEEEEEEeCCCCCeEE-EEE
Confidence 4468999999999998 655
Done!