BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043818
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 149/321 (46%), Positives = 201/321 (62%), Gaps = 13/321 (4%)
Query: 24 VGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKNQ 83
+G+ YG LGNNLPPP+ VV L K N I +R++DP L AL SN+ V L V
Sbjct: 1 IGVCYGMLGNNLPPPSEVVS-LYKSNN--IARMRLYDPNQAALQALRNSNIQVLLDVPRS 57
Query: 84 DLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTE-AVYVLPAMKNIQ 142
D+ +A + +W+R V Y ++ RYI GNE+IPG++ A Y+LPAM+NI
Sbjct: 58 DVQSLASNPSAAGDWIRRNVVAYWP----SVSFRYIAVGNELIPGSDLAQYILPAMRNIY 113
Query: 143 QVLEQENVPN-VGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINV 201
L + N + VST + LG+SYPPS G+F++ L+ I +F+ S GAPL++NV
Sbjct: 114 NALSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNV 173
Query: 202 YPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKV 261
YPYF+ +P Q++L YA F ++ V QDG +Y NLFD+IVD+ AA+ + +V V
Sbjct: 174 YPYFSYTGNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVG-GANVAV 232
Query: 262 VVTETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNENQK 321
VV+E+GWPSAG AS NA+TYN NL +H+ GGTPRRP +E +IF +FNENQK
Sbjct: 233 VVSESGWPSAGGGA-EASTSNAQTYNQNLIRHVG--GGTPRRPGKEIEAYIFEMFNENQK 289
Query: 322 PEGTEQNFGSFYPNLQEVYPL 342
G EQNFG FYPN Q VY +
Sbjct: 290 AGGIEQNFGLFYPNKQPVYQI 310
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 202/325 (62%), Gaps = 19/325 (5%)
Query: 24 VGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKNQ 83
VG+ YG GNNLPP + V+ K I +RI+DP VL AL SN+ + LGV N
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKS---NITRMRIYDPNQAVLEALRGSNIELILGVPNS 58
Query: 84 DLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIP---GTE--AVYVLPAM 138
DL + + ++WV++ V +G +++ RYI GNEI P GT A +VLPAM
Sbjct: 59 DLQSLTNPSN-AKSWVQKNV----RGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAM 113
Query: 139 KNIQQVLEQENVPN-VGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPL 197
+NI + + + + VST + +G+SYPPS G+F +V + LN I +F+ S +PL
Sbjct: 114 RNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPL 173
Query: 198 MINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKE 257
+ N+YPYFT A +P+ ++L YA F S + V DG R Y NLFD+ +D+ +A+ +A G
Sbjct: 174 LANIYPYFTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGS 233
Query: 258 DVKVVVTETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFN 317
++VVV+E+GWPSAG+ A+ +N +TY SNL +H++ GTP+RP +ET++FA+F+
Sbjct: 234 -LEVVVSESGWPSAGAF--AATFDNGRTYLSNLIQHVKR--GTPKRPKRAIETYLFAMFD 288
Query: 318 ENQKPEGTEQNFGSFYPNLQEVYPL 342
EN+K E++FG F+PN + Y L
Sbjct: 289 ENKKQPEVEKHFGLFFPNKWQKYNL 313
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 223 bits (569), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 180/319 (56%), Gaps = 15/319 (4%)
Query: 24 VGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKNQ 83
+G+ YG NNLP + VV + I S+R++ P L A+ + ++V +G N
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSN---GIKSMRLYAPNQAALQAVGGTGINVVVGAPND 57
Query: 84 DLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQQ 143
L+ +A S +WV+ + Y K + RY+ GNE+ G ++PAMKN+
Sbjct: 58 VLSNLAASPAAAASWVKSNIQAYPK-----VSFRYVCVGNEVAGGATR-NLVPAMKNVHG 111
Query: 144 VLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVYP 203
L + ++ V+T +S A LG PPS GSF E A + + +F+ APLM N+YP
Sbjct: 112 ALVAAGLGHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYP 171
Query: 204 YFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKVVV 263
Y A +P + + YA F ++ V +DG Y NLFD+ VD+F AM K G VK+VV
Sbjct: 172 YLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKH-GGSSVKLVV 230
Query: 264 TETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNENQKPE 323
+E+GWPS G A+ NA+ YN +L H+ GTPR P +ET+IFA+FNENQK
Sbjct: 231 SESGWPSGGGTA--ATPANARFYNQHLINHVGR--GTPRHPGA-IETYIFAMFNENQKDS 285
Query: 324 GTEQNFGSFYPNLQEVYPL 342
G EQN+G FYPN+Q VYP+
Sbjct: 286 GVEQNWGLFYPNMQHVYPI 304
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 127/320 (39%), Positives = 188/320 (58%), Gaps = 21/320 (6%)
Query: 24 VGINYGRLGNNLPPPARVVE-FLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKN 82
+G+ YG +GNNLP + VV+ + +K +N +RI+ + + LSAL S + + L + N
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGIN----GMRIYFADGQALSALRNSGIGLILDIGN 56
Query: 83 QDLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQ 142
LA +A S +WV+ V PY + ++YI AGNE+ G +LPAM+N+
Sbjct: 57 DQLANIAASTSNAASWVQNNVRPYYP----AVNIKYIAAGNEV-QGGATQSILPAMRNLN 111
Query: 143 QVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVY 202
L + + VST + + +S+PPS G F T ++++ + S GAPL+ NVY
Sbjct: 112 AALSAAGLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMT---DVARLLASTGAPLLANVY 168
Query: 203 PYFTLASDPQQVTLDYASFRSTTPVA-QDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKV 261
PYF +P ++L+YA+F+ T V Q+ Y +LFD++VD+ AA+ KA G VKV
Sbjct: 169 PYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKA-GAPAVKV 227
Query: 262 VVTETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNENQK 321
VV+E+GWPSAG AS NA+TYN L H+ GGTP++ LET+IFA+FNENQK
Sbjct: 228 VVSESGWPSAGG--FAASAGNARTYNQGLINHVG--GGTPKKREA-LETYIFAMFNENQK 282
Query: 322 P-EGTEQNFGSFYPNLQEVY 340
+ TE++FG F P+ Y
Sbjct: 283 TGDATERSFGLFNPDKSPAY 302
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 183/325 (56%), Gaps = 21/325 (6%)
Query: 24 VGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKNQ 83
+G+ YG++ NNLP V++ + I +RI+ P V +AL SN+ + L V NQ
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNAN---NIKKMRIYYPHTNVFNALKGSNIEIILDVPNQ 59
Query: 84 DLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTE----AVYVLPAMK 139
DL +A + WV++ + + +K +YI GNE+ PG E A +V PAM+
Sbjct: 60 DLEALANPSN-ANGWVQDNIRNHFP----DVKFKYIAVGNEVDPGRESGKYARFVGPAME 114
Query: 140 NIQQVLEQENVPN-VGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLM 198
NI L + N + VST + L ++YPP + F E + +N I F+ PL+
Sbjct: 115 NIYNALSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLL 174
Query: 199 INVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKED 258
N+YPYF + V L YA F + D Y NLFD++VDS A K +G ++
Sbjct: 175 ANIYPYFGHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEK-LGGQN 229
Query: 259 VKVVVTETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNE 318
++++V+E+GWPS G P A+++NA+TY +NL H++ GTP++P +ET++FA+F+E
Sbjct: 230 IEIIVSESGWPSEGH--PAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDE 287
Query: 319 NQKP-EGTEQNFGSFYPNLQEVYPL 342
N+K E +E++FG F P+ + Y L
Sbjct: 288 NEKKGEASEKHFGLFNPDQRPKYQL 312
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 182/325 (56%), Gaps = 21/325 (6%)
Query: 24 VGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKNQ 83
+G+ YG++ NNLP V++ + I +RI+ P V +AL SN+ + L V NQ
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNAN---NIKKMRIYYPHTNVFNALKGSNIEIILDVPNQ 59
Query: 84 DLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTE----AVYVLPAMK 139
DL +A + WV++ + + +K +YI GNE+ PG E A +V PAM+
Sbjct: 60 DLEALANPSN-ANGWVQDNIRNHFP----DVKFKYIAVGNEVDPGRESGKYARFVGPAME 114
Query: 140 NIQQVLEQENVPN-VGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLM 198
NI L + N + VST + L ++YPP + F E + +N I F+ PL+
Sbjct: 115 NIYNALSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLL 174
Query: 199 INVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKED 258
N+YPYF + V L YA F + D Y NLFD++VDS A K +G ++
Sbjct: 175 ANIYPYFGHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEK-LGGQN 229
Query: 259 VKVVVTETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNE 318
++++V+ +GWPS G P A+++NA+TY +NL H++ GTP++P +ET++FA+F+E
Sbjct: 230 IEIIVSASGWPSEGH--PAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDE 287
Query: 319 NQKP-EGTEQNFGSFYPNLQEVYPL 342
N+K E +E++FG F P+ + Y L
Sbjct: 288 NEKKGEASEKHFGLFNPDQRPKYQL 312
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|B Chain B, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|C Chain C, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|D Chain D, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp
Length = 543
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 193 KGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVK 252
KG+ +++ V P F + V +DY + PV G R Y + D I+ +V+
Sbjct: 148 KGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPV---GGRIYID------DGLISLVVQ 198
Query: 253 AVGKEDVKVVVTETG--WPSAGSNLPHASVE 281
+G E + V G G NLP A V+
Sbjct: 199 KIGPEGLVTQVENGGVLGSRKGVNLPGAQVD 229
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
Length = 543
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 193 KGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVK 252
KG+ +++ V P F + V +DY + PV G R Y + D I+ +V+
Sbjct: 148 KGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPV---GGRIYID------DGLISLVVQ 198
Query: 253 AVGKEDVKVVVTETG--WPSAGSNLPHASVE 281
+G E + V G G NLP A V+
Sbjct: 199 KIGPEGLVTQVENGGVLGSRKGVNLPGAQVD 229
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
Length = 528
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 193 KGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVK 252
KG+ +++ V P F + V +DY + PV G R Y + D I+ +V+
Sbjct: 133 KGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPV---GGRIYID------DGLISLVVQ 183
Query: 253 AVGKEDVKVVVTETG--WPSAGSNLPHASVE 281
+G E + V G G NLP A V+
Sbjct: 184 KIGPEGLVTQVENGGVLGSRKGVNLPGAQVD 214
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|B Chain B, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|C Chain C, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|D Chain D, Human Erythrocyte Pyruvate Kinase: T384m Mutant
Length = 528
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 193 KGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVK 252
KG+ +++ V P F + V +DY + PV G R Y + D I+ +V+
Sbjct: 133 KGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPV---GGRIYID------DGLISLVVQ 183
Query: 253 AVGKEDVKVVVTETG--WPSAGSNLPHASVE 281
+G E + V G G NLP A V+
Sbjct: 184 KIGPEGLVTQVENGGVLGSRKGVNLPGAQVD 214
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
Length = 528
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 193 KGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVK 252
KG+ +++ V P F + V +DY + PV G R Y + D I+ +V+
Sbjct: 133 KGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPV---GGRIYID------DGLISLVVQ 183
Query: 253 AVGKEDVKVVVTETG--WPSAGSNLPHASVE 281
+G E + V G G NLP A V+
Sbjct: 184 KIGPEGLVTQVENGGVLGSRKGVNLPGAQVD 214
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
Length = 528
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 193 KGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVK 252
KG+ +++ V P F + V +DY + PV G R Y + D I+ +V+
Sbjct: 133 KGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPV---GGRIYID------DGLISLVVQ 183
Query: 253 AVGKEDVKVVVTETG--WPSAGSNLPHASVE 281
+G E + V G G NLP A V+
Sbjct: 184 KIGPEGLVTQVENGGVLGSRKGVNLPGAQVD 214
>pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
Length = 181
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 138 MKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPS-NGSFATEVATTLNEISKFV--YSKG 194
+KN+Q +L+ N V+ + AA Y PS + S T+ ATTL I K + G
Sbjct: 66 IKNVQLILDGHQTINKYVTEPIRAAIFNLGYLPSADKSVITQPATTLTAIKKILERLEIG 125
Query: 195 APLMINVY 202
L I VY
Sbjct: 126 GRLAIMVY 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,333,349
Number of Sequences: 62578
Number of extensions: 430515
Number of successful extensions: 1028
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 13
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)