Query 043818
Match_columns 344
No_of_seqs 143 out of 1247
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 9.1E-83 2E-87 610.9 22.7 307 24-343 1-309 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 6.4E-50 1.4E-54 365.2 22.6 251 20-336 42-305 (305)
3 PF03198 Glyco_hydro_72: Gluca 99.2 4.8E-10 1.1E-14 106.8 14.1 234 23-337 29-294 (314)
4 PF07745 Glyco_hydro_53: Glyco 99.1 4E-09 8.6E-14 102.4 15.2 245 38-341 26-328 (332)
5 COG3867 Arabinogalactan endo-1 98.6 6.3E-07 1.4E-11 84.5 13.6 250 38-342 65-388 (403)
6 PRK10150 beta-D-glucuronidase; 98.4 6.5E-05 1.4E-09 78.9 23.8 256 24-340 295-583 (604)
7 PF00150 Cellulase: Cellulase 98.0 0.00089 1.9E-08 62.4 19.9 120 23-151 10-165 (281)
8 smart00633 Glyco_10 Glycosyl h 97.9 0.0017 3.7E-08 60.9 19.5 211 64-342 20-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 96.8 0.027 5.9E-07 52.4 13.4 163 114-338 64-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 96.7 0.037 8.1E-07 52.8 13.8 99 23-125 17-132 (298)
11 TIGR03356 BGL beta-galactosida 96.0 1.4 3.1E-05 44.5 21.2 44 39-85 57-119 (427)
12 PF02449 Glyco_hydro_42: Beta- 96.0 0.51 1.1E-05 46.6 17.3 82 39-127 13-140 (374)
13 PRK09936 hypothetical protein; 95.3 3 6.4E-05 40.1 20.1 62 23-84 21-96 (296)
14 PF00232 Glyco_hydro_1: Glycos 94.9 0.17 3.6E-06 51.6 9.9 279 39-340 61-441 (455)
15 cd02875 GH18_chitobiase Chitob 87.5 14 0.00031 36.4 13.6 92 52-150 55-150 (358)
16 cd02874 GH18_CFLE_spore_hydrol 86.3 8.6 0.00019 36.8 11.1 83 63-150 48-138 (313)
17 PF00331 Glyco_hydro_10: Glyco 85.0 32 0.0007 33.3 14.4 215 64-340 63-311 (320)
18 COG3934 Endo-beta-mannanase [C 79.3 5 0.00011 41.1 6.4 238 39-341 26-311 (587)
19 PRK09525 lacZ beta-D-galactosi 78.2 20 0.00043 40.5 11.4 101 23-127 352-465 (1027)
20 PRK10340 ebgA cryptic beta-D-g 76.9 26 0.00056 39.6 11.9 101 23-127 336-452 (1021)
21 PRK13511 6-phospho-beta-galact 74.3 5.2 0.00011 41.0 5.2 46 39-87 57-121 (469)
22 cd00598 GH18_chitinase-like Th 73.4 12 0.00025 33.2 6.7 81 65-150 54-142 (210)
23 cd06545 GH18_3CO4_chitinase Th 73.2 50 0.0011 30.6 11.2 81 64-150 50-133 (253)
24 PF01229 Glyco_hydro_39: Glyco 70.2 1.4E+02 0.0029 30.8 17.0 239 51-339 52-350 (486)
25 PF14587 Glyco_hydr_30_2: O-Gl 69.0 85 0.0019 31.5 12.1 94 64-161 108-228 (384)
26 PLN02814 beta-glucosidase 67.6 14 0.0003 38.4 6.5 74 256-337 385-461 (504)
27 PRK09589 celA 6-phospho-beta-g 65.4 17 0.00037 37.4 6.7 45 39-86 70-134 (476)
28 PRK09593 arb 6-phospho-beta-gl 64.0 19 0.0004 37.2 6.7 46 39-87 76-141 (478)
29 PF14488 DUF4434: Domain of un 63.5 15 0.00033 32.3 5.1 47 37-83 18-88 (166)
30 PRK15014 6-phospho-beta-glucos 62.9 20 0.00044 36.9 6.7 45 39-86 72-136 (477)
31 PF03662 Glyco_hydro_79n: Glyc 62.7 20 0.00044 35.0 6.3 174 64-273 112-300 (319)
32 PF02055 Glyco_hydro_30: O-Gly 61.6 1.9E+02 0.0042 30.0 13.6 84 71-157 166-278 (496)
33 KOG0626 Beta-glucosidase, lact 60.2 1E+02 0.0022 32.2 11.0 74 255-335 404-486 (524)
34 COG4782 Uncharacterized protei 60.2 34 0.00074 34.0 7.3 58 235-296 125-186 (377)
35 PRK14338 (dimethylallyl)adenos 56.0 2E+02 0.0044 29.3 12.5 137 37-206 185-346 (459)
36 cd02876 GH18_SI-CLP Stabilin-1 55.6 1.4E+02 0.003 28.6 10.8 82 64-150 55-148 (318)
37 PRK09852 cryptic 6-phospho-bet 55.3 38 0.00083 34.9 7.2 46 39-87 74-139 (474)
38 PLN03059 beta-galactosidase; P 54.7 1.9E+02 0.0041 32.1 12.5 121 37-160 57-223 (840)
39 cd02872 GH18_chitolectin_chito 52.8 52 0.0011 32.1 7.5 78 66-148 61-150 (362)
40 PLN02998 beta-glucosidase 51.6 27 0.00058 36.2 5.3 74 256-337 390-466 (497)
41 smart00481 POLIIIAc DNA polyme 51.5 59 0.0013 23.4 5.9 44 36-82 15-63 (67)
42 TIGR01125 MiaB-like tRNA modif 49.7 2.8E+02 0.0062 27.8 12.4 140 37-208 165-328 (430)
43 PF07172 GRP: Glycine rich pro 49.2 8.5 0.00018 30.8 1.0 7 1-7 1-7 (95)
44 cd06544 GH18_narbonin Narbonin 48.8 2.1E+02 0.0046 26.8 10.5 82 64-150 59-147 (253)
45 PF00925 GTP_cyclohydro2: GTP 48.5 27 0.00058 30.7 4.2 38 41-81 131-168 (169)
46 smart00636 Glyco_18 Glycosyl h 48.4 73 0.0016 30.5 7.6 78 66-148 57-142 (334)
47 TIGR01579 MiaB-like-C MiaB-lik 47.2 3E+02 0.0066 27.4 14.7 140 36-208 167-331 (414)
48 PF04909 Amidohydro_2: Amidohy 44.7 66 0.0014 29.1 6.4 55 134-202 83-138 (273)
49 COG3858 Predicted glycosyl hyd 44.5 78 0.0017 32.0 7.1 90 63-160 150-249 (423)
50 PRK14334 (dimethylallyl)adenos 44.0 3.6E+02 0.0077 27.3 12.7 58 130-205 270-327 (440)
51 cd06549 GH18_trifunctional GH1 43.4 2.9E+02 0.0063 26.2 10.8 60 86-150 80-139 (298)
52 PLN00196 alpha-amylase; Provis 42.5 93 0.002 31.6 7.6 61 23-83 28-116 (428)
53 PLN02849 beta-glucosidase 42.3 46 0.00099 34.6 5.4 45 39-86 82-145 (503)
54 KOG0078 GTP-binding protein SE 42.2 64 0.0014 29.6 5.7 62 55-126 62-128 (207)
55 COG2159 Predicted metal-depend 41.1 1.5E+02 0.0033 28.3 8.5 55 135-203 112-166 (293)
56 TIGR00505 ribA GTP cyclohydrol 41.0 47 0.001 29.8 4.6 33 42-77 131-163 (191)
57 PRK14328 (dimethylallyl)adenos 40.9 3.6E+02 0.0077 27.3 11.5 138 37-207 177-339 (439)
58 PF05990 DUF900: Alpha/beta hy 40.8 83 0.0018 29.0 6.4 38 255-295 46-87 (233)
59 PF12876 Cellulase-like: Sugar 40.6 74 0.0016 24.4 5.2 45 113-158 8-63 (88)
60 PRK00393 ribA GTP cyclohydrola 40.5 48 0.001 29.9 4.6 33 42-77 134-166 (197)
61 PF06180 CbiK: Cobalt chelatas 38.8 3.5E+02 0.0075 25.6 12.1 145 34-209 56-210 (262)
62 PF10731 Anophelin: Thrombin i 38.8 15 0.00031 26.9 0.8 9 1-9 1-9 (65)
63 TIGR01233 lacG 6-phospho-beta- 38.4 58 0.0013 33.4 5.4 46 39-87 56-120 (467)
64 COG2896 MoaA Molybdenum cofact 36.0 4.3E+02 0.0093 25.9 11.5 136 34-209 41-190 (322)
65 PF01301 Glyco_hydro_35: Glyco 35.7 4.2E+02 0.009 25.7 11.1 111 39-157 27-179 (319)
66 PHA02754 hypothetical protein; 34.4 40 0.00088 24.5 2.5 26 133-158 15-42 (67)
67 COG4213 XylF ABC-type xylose t 31.3 1.9E+02 0.0041 28.4 7.2 78 1-78 1-111 (341)
68 PF01055 Glyco_hydro_31: Glyco 30.6 3.7E+02 0.0081 26.8 9.8 131 131-315 42-178 (441)
69 cd00641 GTP_cyclohydro2 GTP cy 29.9 88 0.0019 28.0 4.6 36 42-80 133-168 (193)
70 COG1453 Predicted oxidoreducta 29.5 40 0.00087 33.6 2.4 66 39-106 34-106 (391)
71 COG3250 LacZ Beta-galactosidas 29.4 3.7E+02 0.008 29.8 10.0 115 24-142 303-424 (808)
72 PRK14327 (dimethylallyl)adenos 29.4 6.7E+02 0.014 26.1 13.9 138 37-207 242-404 (509)
73 PF14871 GHL6: Hypothetical gl 28.9 1.3E+02 0.0029 25.3 5.2 43 38-83 2-67 (132)
74 PRK14326 (dimethylallyl)adenos 28.1 6.9E+02 0.015 25.8 13.0 25 37-61 187-211 (502)
75 TIGR00089 RNA modification enz 28.0 6.2E+02 0.013 25.3 12.4 138 37-207 169-331 (429)
76 PRK12485 bifunctional 3,4-dihy 27.7 77 0.0017 31.6 4.1 33 42-78 331-363 (369)
77 cd02871 GH18_chitinase_D-like 27.5 5.5E+02 0.012 24.5 13.5 76 66-146 66-146 (312)
78 PRK14019 bifunctional 3,4-dihy 27.3 80 0.0017 31.5 4.1 36 42-81 328-363 (367)
79 PRK14340 (dimethylallyl)adenos 26.7 6.9E+02 0.015 25.4 11.3 138 37-207 179-340 (445)
80 TIGR03632 bact_S11 30S ribosom 26.3 1.5E+02 0.0032 24.1 4.9 37 39-78 50-91 (108)
81 PF04244 DPRP: Deoxyribodipyri 25.9 1.2E+02 0.0026 28.0 4.8 91 3-100 42-140 (224)
82 cd04743 NPD_PKS 2-Nitropropane 25.3 5.8E+02 0.013 24.9 9.6 57 22-82 56-112 (320)
83 COG2730 BglC Endoglucanase [Ca 25.1 5.9E+02 0.013 25.4 10.0 102 39-148 76-218 (407)
84 COG5016 Pyruvate/oxaloacetate 25.1 95 0.0021 31.5 4.1 44 39-82 97-147 (472)
85 COG1433 Uncharacterized conser 25.1 1.7E+02 0.0036 24.5 5.0 40 39-81 55-94 (121)
86 PRK14336 (dimethylallyl)adenos 24.6 7.2E+02 0.016 24.9 12.8 137 37-206 154-315 (418)
87 PRK14339 (dimethylallyl)adenos 24.6 7.2E+02 0.016 24.9 12.0 145 28-207 150-322 (420)
88 PRK09318 bifunctional 3,4-dihy 24.4 1.1E+02 0.0025 30.7 4.6 38 42-82 320-357 (387)
89 PRK13347 coproporphyrinogen II 24.3 1.4E+02 0.0031 30.3 5.4 25 131-155 262-286 (453)
90 PF00704 Glyco_hydro_18: Glyco 24.1 1.4E+02 0.0031 28.2 5.2 74 70-148 70-152 (343)
91 PRK09314 bifunctional 3,4-dihy 24.0 1.1E+02 0.0024 30.2 4.3 34 41-77 300-334 (339)
92 PRK09311 bifunctional 3,4-dihy 23.5 1.2E+02 0.0026 30.6 4.6 38 41-81 338-375 (402)
93 PRK08815 GTP cyclohydrolase; P 23.2 1.2E+02 0.0027 30.3 4.6 37 42-81 305-341 (375)
94 PF02057 Glyco_hydro_59: Glyco 23.1 1.7E+02 0.0036 31.6 5.7 85 65-161 117-213 (669)
95 PLN02831 Bifunctional GTP cycl 23.1 1.2E+02 0.0026 31.1 4.6 37 42-81 373-409 (450)
96 PRK09319 bifunctional 3,4-dihy 23.1 1.2E+02 0.0026 31.9 4.6 38 41-81 342-379 (555)
97 PF13721 SecD-TM1: SecD export 21.4 1.5E+02 0.0033 23.7 4.0 54 2-58 6-65 (101)
98 COG4213 XylF ABC-type xylose t 21.3 2.2E+02 0.0048 27.9 5.7 73 64-157 176-249 (341)
99 TIGR03628 arch_S11P archaeal r 21.1 2.1E+02 0.0045 23.7 4.8 36 39-77 53-101 (114)
100 PRK11119 proX glycine betaine 20.3 1.6E+02 0.0035 28.7 4.7 42 39-83 45-88 (331)
101 PF00411 Ribosomal_S11: Riboso 20.0 1.9E+02 0.004 23.5 4.3 36 40-78 51-91 (110)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=9.1e-83 Score=610.89 Aligned_cols=307 Identities=45% Similarity=0.819 Sum_probs=254.1
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeecCCchhHhhcCHHHHHHHHHHhc
Q 043818 24 VGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKNQDLAQMAGSMDYTRNWVREFV 103 (344)
Q Consensus 24 ~Gv~Yg~~~~~~~~~~~v~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v 103 (344)
+|||||+.++|+|++.++++++|+ ++|++||||++|+++|+|++++||+|++||+|++++++++++..|..|++++|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks---~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv 77 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKS---NGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNV 77 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHH---TT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHT
T ss_pred CeEeccCccCCCCCHHHHHHHHHh---cccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhcc
Confidence 699999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcceEEEEeecccccCCCCHhHHHHHHHHHHHHHHhCCC-CCeeEeeeecccccccccCCCCcccchhhHHH
Q 043818 104 TPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQQVLEQENV-PNVGVSTVLSAAALGSSYPPSNGSFATEVATT 182 (344)
Q Consensus 104 ~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~~i~~v~~aL~~~gl-~~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~ 182 (344)
.+|++ .++|++|+||||++.......|+|+|+++|++|.+.|| ++|||+|++.++++..+||||.|.|+.++.+.
T Consensus 78 ~~~~~----~~~i~~i~VGnEv~~~~~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~ 153 (310)
T PF00332_consen 78 LPYLP----AVNIRYIAVGNEVLTGTDNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASV 153 (310)
T ss_dssp CTCTT----TSEEEEEEEEES-TCCSGGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHH
T ss_pred cccCc----ccceeeeecccccccCccceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhh
Confidence 99998 78999999999999876544899999999999999999 68999999999999999999999999999899
Q ss_pred HHHHHHHhhhcCCceeeeccCccccCCCCCccCcccccccCCCccccCCCccchhhhHHHHHHHHHHHHHhcCCCCceEE
Q 043818 183 LNEISKFVYSKGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKVV 262 (344)
Q Consensus 183 l~~~ldfL~~~~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n~fd~~~d~~~~a~~k~~g~~~~~vv 262 (344)
|.++++||.+++||+++|+||||.+..+|.+++++||+|++++.+. |++++|+|+||+|+|++++||+|+ |+++++|+
T Consensus 154 ~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~-g~~~~~vv 231 (310)
T PF00332_consen 154 MDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKL-GFPNVPVV 231 (310)
T ss_dssp HHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTT-T-TT--EE
T ss_pred hhHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHh-CCCCceeE
Confidence 9999999999999999999999999999999999999999987666 779999999999999999999999 99999999
Q ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEEEeecCCCCCC-CCCCceeeecCCCceecc
Q 043818 263 VTETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNENQKPE-GTEQNFGSFYPNLQEVYP 341 (344)
Q Consensus 263 ItETGWPs~G~~~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~fDe~wK~g-~~E~~wGlf~~n~~~ky~ 341 (344)
||||||||+|+. .++.+||+.|++++++++. .|||+||+.++++||||+|||+||++ .+|||||||++||+|||+
T Consensus 232 v~ETGWPs~G~~--~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~ 307 (310)
T PF00332_consen 232 VGETGWPSAGDP--GATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYD 307 (310)
T ss_dssp EEEE---SSSST--TCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS-
T ss_pred EeccccccCCCC--CCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecC
Confidence 999999999995 8999999999999999998 89999999899999999999999996 499999999999999999
Q ss_pred CC
Q 043818 342 LW 343 (344)
Q Consensus 342 l~ 343 (344)
|+
T Consensus 308 ~~ 309 (310)
T PF00332_consen 308 LD 309 (310)
T ss_dssp --
T ss_pred CC
Confidence 86
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-50 Score=365.25 Aligned_cols=251 Identities=22% Similarity=0.322 Sum_probs=203.9
Q ss_pred cCCeeeEEecCCCCCCCCH--HHHHHHHhhhhcCCCCEEEEccCCh----hHHHHHhhCCCeEEEeecCCchhHhhcCHH
Q 043818 20 GAGTVGINYGRLGNNLPPP--ARVVEFLTKDLNYAIPSVRIFDPEP----EVLSALATSNLSVCLGVKNQDLAQMAGSMD 93 (344)
Q Consensus 20 ~~~~~Gv~Yg~~~~~~~~~--~~v~~~lk~~~~~~~~~VRiY~~d~----~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~ 93 (344)
+.+..+|||+|+++++.|| +++..+|+.++.. ...||+|++|| +|++|+...|++|+||||..+..+ .
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~-t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~-----~ 115 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASY-THSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH-----D 115 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccC-CceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh-----h
Confidence 3567899999999999988 7777788776323 23999999987 689999999999999999865322 2
Q ss_pred HHHHHHHHhcccccCCCCCcceEEEEeecccccCCC--CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCC
Q 043818 94 YTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGT--EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPS 171 (344)
Q Consensus 94 ~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~--~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps 171 (344)
..++-+..++.++.. ++.|++|+||||+|+|+ .+++|+.+|..||.+|+.+|++ .||+|+++|.++.+
T Consensus 116 ~~~~til~ay~~~~~----~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~-gpV~T~dsw~~~~~----- 185 (305)
T COG5309 116 AVEKTILSAYLPYNG----WDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD-GPVTTVDSWNVVIN----- 185 (305)
T ss_pred hHHHHHHHHHhccCC----CCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC-CceeecccceeeeC-----
Confidence 222236667777754 89999999999999997 5999999999999999999993 68999999988875
Q ss_pred CcccchhhHHHHHHHHHHhhhcCCceeeeccCccccCCCCCccCcccccccCCCccccCCCccchhhhHHHHHHHHHHHH
Q 043818 172 NGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMV 251 (344)
Q Consensus 172 ~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n~fd~~~d~~~~a~~ 251 (344)
+|.||+..|| +|+|.||||+.+..++ +.+ .++-.|++-++.+.
T Consensus 186 --------np~l~~~SDf-------ia~N~~aYwd~~~~a~-----------------~~~----~f~~~q~e~vqsa~- 228 (305)
T COG5309 186 --------NPELCQASDF-------IAANAHAYWDGQTVAN-----------------AAG----TFLLEQLERVQSAC- 228 (305)
T ss_pred --------ChHHhhhhhh-------hhcccchhccccchhh-----------------hhh----HHHHHHHHHHHHhc-
Confidence 3667777776 9999999999975431 112 35545566554432
Q ss_pred HhcCCCCceEEEeeeccCCCCC--CCCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEEEeecCCCCC-C--CCC
Q 043818 252 KAVGKEDVKVVVTETGWPSAGS--NLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNENQKP-E--GTE 326 (344)
Q Consensus 252 k~~g~~~~~vvItETGWPs~G~--~~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~fDe~wK~-g--~~E 326 (344)
| .+|+++|+||||||.|. ++++||++||+.|+++++|.+++ .++++|+||+|||+||. + ++|
T Consensus 229 ---g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VE 295 (305)
T COG5309 229 ---G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVE 295 (305)
T ss_pred ---C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchh
Confidence 4 34999999999999997 57899999999999999999873 46999999999999998 4 799
Q ss_pred CceeeecCCC
Q 043818 327 QNFGSFYPNL 336 (344)
Q Consensus 327 ~~wGlf~~n~ 336 (344)
+|||++..++
T Consensus 296 kywGv~~s~~ 305 (305)
T COG5309 296 KYWGVLSSDR 305 (305)
T ss_pred hceeeeccCC
Confidence 9999998875
No 3
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.17 E-value=4.8e-10 Score=106.77 Aligned_cols=234 Identities=19% Similarity=0.346 Sum_probs=114.3
Q ss_pred eeeEEecCCCC-------CC-CCH---HHHHHHHhhhhcCCCCEEEEccCCh-----hHHHHHhhCCCeEEEeecCCchh
Q 043818 23 TVGINYGRLGN-------NL-PPP---ARVVEFLTKDLNYAIPSVRIFDPEP-----EVLSALATSNLSVCLGVKNQDLA 86 (344)
Q Consensus 23 ~~Gv~Yg~~~~-------~~-~~~---~~v~~~lk~~~~~~~~~VRiY~~d~-----~vl~A~~~~gi~V~lGv~~~~~~ 86 (344)
..||.|.|-++ |. ..+ ...+.+||. .|++.||+|..|+ ..++++++.||-|++.|.... .
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~---LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~ 104 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKE---LGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-G 104 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHH---HT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-B
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHH---cCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-c
Confidence 37999999776 22 122 455668888 8999999999885 479999999999999998652 2
Q ss_pred HhhcCHHHHHHH-------HHHhcccccCCCCCcceEEEEeecccccCCC----CHhHHHHHHHHHHHHHHhCCCCCeeE
Q 043818 87 QMAGSMDYTRNW-------VREFVTPYTKGGNGTLKLRYITAGNEIIPGT----EAVYVLPAMKNIQQVLEQENVPNVGV 155 (344)
Q Consensus 87 ~~~~~~~~a~~w-------v~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~----~~~~L~~~i~~v~~aL~~~gl~~IkV 155 (344)
++.+... +..| +..-|..|.. -+++-+..+|||++... .++.+-.+++++|+-+++.+++.|||
T Consensus 105 sI~r~~P-~~sw~~~l~~~~~~vid~fa~----Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 105 SINRSDP-APSWNTDLLDRYFAVIDAFAK----YDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp S--TTS-------HHHHHHHHHHHHHHTT-----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred cccCCCC-cCCCCHHHHHHHHHHHHHhcc----CCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 3322211 1123 3334555543 47899999999999864 47888889999999999999977999
Q ss_pred eeeecccccccccCCCCcccchhhHHHHHHHHHHhh-----hcCCceeeeccCccccCCCCCccCcccccccCCCccccC
Q 043818 156 STVLSAAALGSSYPPSNGSFATEVATTLNEISKFVY-----SKGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQD 230 (344)
Q Consensus 156 sT~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~-----~~~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~ 230 (344)
+-+-+-.. .++ .++.+||. +.-|++++|.|-+=.. ..|+.+
T Consensus 180 GYsaaD~~----------~~r-------~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~-----------Stf~~S------ 225 (314)
T PF03198_consen 180 GYSAADDA----------EIR-------QDLANYLNCGDDDERIDFFGLNSYEWCGD-----------STFETS------ 225 (314)
T ss_dssp EEEE---T----------TTH-------HHHHHHTTBTT-----S-EEEEE----SS-------------HHHH------
T ss_pred eEEccCCh----------hHH-------HHHHHHhcCCCcccccceeeeccceecCC-----------Cccccc------
Confidence 87743210 112 22344443 3446699999854322 112110
Q ss_pred CCccchhhhHHHHHHHHHHHHHhcCCCCceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccE
Q 043818 231 GDRNYFNLFDSIVDSFIAAMVKAVGKEDVKVVVTETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLET 310 (344)
Q Consensus 231 ~~~~y~n~fd~~~d~~~~a~~k~~g~~~~~vvItETGWPs~G~~~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~ 310 (344)
.|..+. ...+ ++ .+||+.+|.|.-+... ..=.+-+..|-.. +..+-+ --
T Consensus 226 ---Gy~~l~--------~~f~---~y-~vPvffSEyGCn~~~p---R~f~ev~aly~~~-Mt~v~S------------GG 274 (314)
T PF03198_consen 226 ---GYDRLT--------KEFS---NY-SVPVFFSEYGCNTVTP---RTFTEVPALYSPE-MTDVWS------------GG 274 (314)
T ss_dssp ---SHHHHH--------HHHT---T--SS-EEEEEE---SSSS------THHHHHTSHH-HHTTEE------------EE
T ss_pred ---cHHHHH--------HHhh---CC-CCCeEEcccCCCCCCC---ccchHhHHhhCcc-chhhee------------ce
Confidence 133322 1221 43 5999999999986542 1111222233222 222221 13
Q ss_pred EEEEeecCCCCCCCCCCceeeecCCCc
Q 043818 311 FIFALFNENQKPEGTEQNFGSFYPNLQ 337 (344)
Q Consensus 311 ~~F~~fDe~wK~g~~E~~wGlf~~n~~ 337 (344)
..||.+-|. .+|||...++.
T Consensus 275 ivYEy~~e~-------n~yGlV~~~~~ 294 (314)
T PF03198_consen 275 IVYEYFQEA-------NNYGLVEISGD 294 (314)
T ss_dssp EES-SB--S-------SS--SEEE-TT
T ss_pred EEEEEeccC-------CceEEEEEcCC
Confidence 567777664 68899887654
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.06 E-value=4e-09 Score=102.41 Aligned_cols=245 Identities=15% Similarity=0.216 Sum_probs=122.4
Q ss_pred HHHHHHHHhhhhcCCCCEEEE--c-cC------C-hh---HHHHHhhCCCeEEEeecCCchhH----------hhc-CHH
Q 043818 38 PARVVEFLTKDLNYAIPSVRI--F-DP------E-PE---VLSALATSNLSVCLGVKNQDLAQ----------MAG-SMD 93 (344)
Q Consensus 38 ~~~v~~~lk~~~~~~~~~VRi--Y-~~------d-~~---vl~A~~~~gi~V~lGv~~~~~~~----------~~~-~~~ 93 (344)
..+++++||. .|++.||+ + ++ | .+ ..+.+++.||+|+|-.--+|-.+ ... +.+
T Consensus 26 ~~d~~~ilk~---~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~ 102 (332)
T PF07745_consen 26 EKDLFQILKD---HGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFD 102 (332)
T ss_dssp B--HHHHHHH---TT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHH
T ss_pred CCCHHHHHHh---cCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHH
Confidence 4678999999 99986665 4 11 1 13 45556789999999997654211 111 112
Q ss_pred H----HHHHHHHhcccccCCCCCcceEEEEeecccccCC--------CCHhHHHHHHHHHHHHHHhCCCCCeeEeeeecc
Q 043818 94 Y----TRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPG--------TEAVYVLPAMKNIQQVLEQENVPNVGVSTVLSA 161 (344)
Q Consensus 94 ~----a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~--------~~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~ 161 (344)
+ ..++.++-+..+.. + ......|.||||.=.. ...+.+...++...+++++.. .++||-.-.
T Consensus 103 ~l~~~v~~yT~~vl~~l~~--~-G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~-p~~kV~lH~-- 176 (332)
T PF07745_consen 103 QLAKAVYDYTKDVLQALKA--A-GVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD-PNIKVMLHL-- 176 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHH--T-T--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS-STSEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHH--C-CCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC-CCCcEEEEE--
Confidence 2 22222222222211 1 3678999999997643 136778888888888888755 345553321
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHhhhcCCceeeeccCccccCCCCCccCcccccccCCCccccCCCccchhhhHH
Q 043818 162 AALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDS 241 (344)
Q Consensus 162 ~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n~fd~ 241 (344)
.+. -....|+--.......=+|| |+++++.||||... + +.+..
T Consensus 177 ---~~~--~~~~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~-------l--------------------~~l~~ 219 (332)
T PF07745_consen 177 ---ANG--GDNDLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGT-------L--------------------EDLKN 219 (332)
T ss_dssp ---S-T--TSHHHHHHHHHHHHHTTGG------SEEEEEE-STTST--------H--------------------HHHHH
T ss_pred ---CCC--CchHHHHHHHHHHHhcCCCc-----ceEEEecCCCCcch-------H--------------------HHHHH
Confidence 110 00001110001111112455 99999999999872 1 12222
Q ss_pred HHHHHHHHHHHhcCCCCceEEEeeeccCCCCC-----CC----------CCCCHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 043818 242 IVDSFIAAMVKAVGKEDVKVVVTETGWPSAGS-----NL----------PHASVENAKTYNSNLKKHIQTLGGTPRRPNL 306 (344)
Q Consensus 242 ~~d~~~~a~~k~~g~~~~~vvItETGWPs~G~-----~~----------a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~ 306 (344)
.++. ..++. +|+|+|.|||||.... .. -.+|++.|+.|++++++.+.+..+ +.
T Consensus 220 ~l~~---l~~ry----~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~ 287 (332)
T PF07745_consen 220 NLND---LASRY----GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GG 287 (332)
T ss_dssp HHHH---HHHHH----T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TT
T ss_pred HHHH---HHHHh----CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CC
Confidence 2332 22343 5999999999999832 10 125899999999999999875221 23
Q ss_pred cccEEEEEee-cCCCC-----CC-CCCCceeeecCCCceecc
Q 043818 307 NLETFIFALF-NENQK-----PE-GTEQNFGSFYPNLQEVYP 341 (344)
Q Consensus 307 ~~~~~~F~~f-De~wK-----~g-~~E~~wGlf~~n~~~ky~ 341 (344)
+.-+|+-|.- -..+. .| .+|.. +||+.+|++-=.
T Consensus 288 g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 288 GLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp EEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred eEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 4556655532 21111 12 33433 899999987543
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=6.3e-07 Score=84.55 Aligned_cols=250 Identities=17% Similarity=0.226 Sum_probs=137.1
Q ss_pred HHHHHHHHhhhhcCCCCEEEE--c----cCCh--------------hHHHHHhhCCCeEEEeecCCchhHhhcCHHHHHH
Q 043818 38 PARVVEFLTKDLNYAIPSVRI--F----DPEP--------------EVLSALATSNLSVCLGVKNQDLAQMAGSMDYTRN 97 (344)
Q Consensus 38 ~~~v~~~lk~~~~~~~~~VRi--Y----~~d~--------------~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~ 97 (344)
.++..+.||. .|++.||+ | +.|. .+-+.+++.||||++-.-.+|-.+-..-+..-.+
T Consensus 65 ~qD~~~iLK~---~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPka 141 (403)
T COG3867 65 RQDALQILKN---HGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKA 141 (403)
T ss_pred HHHHHHHHHH---cCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHH
Confidence 3677788888 99987776 3 4431 2445566799999999866543211111111112
Q ss_pred H-------HHHhcccccC-----CCCCcceEEEEeecccccCC-----C---CHhHHHHHHHHHHHHHHhCCCCCeeEee
Q 043818 98 W-------VREFVTPYTK-----GGNGTLKLRYITAGNEIIPG-----T---EAVYVLPAMKNIQQVLEQENVPNVGVST 157 (344)
Q Consensus 98 w-------v~~~v~~~~~-----~~~~~~~I~~I~VGNE~l~~-----~---~~~~L~~~i~~v~~aL~~~gl~~IkVsT 157 (344)
| +++.|-.|.. ..+....+..|-||||.-.. + .-..+...++.--++++... ..|||-.
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~-p~ikv~l 220 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS-PTIKVAL 220 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC-CCceEEE
Confidence 3 2222211100 01123578899999998643 1 23344555555555555433 3566644
Q ss_pred eecccccccccCCCCcccchhhHHHHHHHHHHhhhcCCceeeeccCccccCCCCCccCcccccccCCCccccCCCccchh
Q 043818 158 VLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFN 237 (344)
Q Consensus 158 ~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n 237 (344)
- +.++-.+ +.|+--....-+.-+|| |.+++--||||.+.-+. ++ +|
T Consensus 221 H-----la~g~~n--~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~n---------------------L~-~n 266 (403)
T COG3867 221 H-----LAEGENN--SLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLNN---------------------LT-TN 266 (403)
T ss_pred E-----ecCCCCC--chhhHHHHHHHHcCCCc-----eEEeeeccccccCcHHH---------------------HH-hH
Confidence 3 2222222 33432111222334566 88999999999985320 10 02
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeeecc--------------CCCCCC-CCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 043818 238 LFDSIVDSFIAAMVKAVGKEDVKVVVTETGW--------------PSAGSN-LPHASVENAKTYNSNLKKHIQTLGGTPR 302 (344)
Q Consensus 238 ~fd~~~d~~~~a~~k~~g~~~~~vvItETGW--------------Ps~G~~-~a~as~~na~~y~~~~i~~~~~~~Gtp~ 302 (344)
| + .+..- -+|.|+|-||+. |+.+.. .-..|++.|.+|.+++|+.+... |.
T Consensus 267 l-----~----dia~r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv---p~ 331 (403)
T COG3867 267 L-----N----DIASR---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV---PK 331 (403)
T ss_pred H-----H----HHHHH---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC---CC
Confidence 2 1 12221 258999999998 555531 23477889999999999998643 22
Q ss_pred CCCCcccEEEEE-------------------eecCCCCCCCCCCceeeecCCCceeccC
Q 043818 303 RPNLNLETFIFA-------------------LFNENQKPEGTEQNFGSFYPNLQEVYPL 342 (344)
Q Consensus 303 ~p~~~~~~~~F~-------------------~fDe~wK~g~~E~~wGlf~~n~~~ky~l 342 (344)
. ++.-+|+.| .-.|+|+.|..-.+=-||+.+|.|--.|
T Consensus 332 ~--~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl 388 (403)
T COG3867 332 S--NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSL 388 (403)
T ss_pred C--CceEEEEecccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcch
Confidence 1 123344443 2235666654444446888888875544
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.42 E-value=6.5e-05 Score=78.92 Aligned_cols=256 Identities=11% Similarity=0.030 Sum_probs=135.0
Q ss_pred eeEEecCCCC---CCCCHHHHHHHHhhhhcCCCCEEEEcc--CChhHHHHHhhCCCeEEEeecCCc--------------
Q 043818 24 VGINYGRLGN---NLPPPARVVEFLTKDLNYAIPSVRIFD--PEPEVLSALATSNLSVCLGVKNQD-------------- 84 (344)
Q Consensus 24 ~Gv~Yg~~~~---~~~~~~~v~~~lk~~~~~~~~~VRiY~--~d~~vl~A~~~~gi~V~lGv~~~~-------------- 84 (344)
.|+|+-.... ..++.+...++++.++..|++.||+-. .++..+.+|-..||-|+.=++.-.
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 4777633221 124444444444333349999999943 356899999999999885443210
Q ss_pred -hhHhh------cCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCCCHhHHHHHHHHHHHHHHhCCCCCeeEee
Q 043818 85 -LAQMA------GSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQQVLEQENVPNVGVST 157 (344)
Q Consensus 85 -~~~~~------~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~~i~~v~~aL~~~gl~~IkVsT 157 (344)
..... ...+...+-+++.|..+.. ---|..=++|||.-... ......++.+.+.+++.-- .=+|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~N----HPSIi~Ws~gNE~~~~~--~~~~~~~~~l~~~~k~~Dp-tR~vt~ 447 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKN----HPSVVMWSIANEPASRE--QGAREYFAPLAELTRKLDP-TRPVTC 447 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccC----CceEEEEeeccCCCccc--hhHHHHHHHHHHHHHhhCC-CCceEE
Confidence 00000 0112222235555655432 34566889999975332 1222333444444443332 224555
Q ss_pred eecccccccccCCCCcccchhhHHHHHHHHHHhhhcCCceeeeccCccccCCCCCccCcccccccCCCccccCCCccchh
Q 043818 158 VLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFN 237 (344)
Q Consensus 158 ~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n 237 (344)
+..+. . +|.. ..+.+++ |+++.|.|+=|-..... . + ....
T Consensus 448 ~~~~~---~--~~~~--------~~~~~~~-------Dv~~~N~Y~~wy~~~~~--~--~----------------~~~~ 487 (604)
T PRK10150 448 VNVMF---A--TPDT--------DTVSDLV-------DVLCLNRYYGWYVDSGD--L--E----------------TAEK 487 (604)
T ss_pred Eeccc---C--Cccc--------ccccCcc-------cEEEEcccceecCCCCC--H--H----------------HHHH
Confidence 43110 0 0100 1122334 44999998633221100 0 0 0011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeeeccCCCCC----CCCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEE
Q 043818 238 LFDSIVDSFIAAMVKAVGKEDVKVVVTETGWPSAGS----NLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIF 313 (344)
Q Consensus 238 ~fd~~~d~~~~a~~k~~g~~~~~vvItETGWPs~G~----~~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F 313 (344)
.++..++ ...+ .+ +||++++|.|+.+.-+ +...-|.+.|..|++...+.+.+ +|. -.-.|+.
T Consensus 488 ~~~~~~~----~~~~--~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW 553 (604)
T PRK10150 488 VLEKELL----AWQE--KL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVW 553 (604)
T ss_pred HHHHHHH----HHHH--hc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEE
Confidence 2222222 1112 23 7999999999766322 22345788899998887776653 333 4567899
Q ss_pred EeecCCCCCC---CCCCceeeecCCCceec
Q 043818 314 ALFNENQKPE---GTEQNFGSFYPNLQEVY 340 (344)
Q Consensus 314 ~~fDe~wK~g---~~E~~wGlf~~n~~~ky 340 (344)
.+||-....| .-..+.||++.+|+||-
T Consensus 554 ~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~ 583 (604)
T PRK10150 554 NFADFATSQGILRVGGNKKGIFTRDRQPKS 583 (604)
T ss_pred eeeccCCCCCCcccCCCcceeEcCCCCChH
Confidence 9999554432 12358899999999985
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.03 E-value=0.00089 Score=62.35 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=77.0
Q ss_pred eeeEEecCCCCCCCCHHHHHHHHhhhhcCCCCEEEEccC-------------Ch-------hHHHHHhhCCCeEEEeecC
Q 043818 23 TVGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDP-------------EP-------EVLSALATSNLSVCLGVKN 82 (344)
Q Consensus 23 ~~Gv~Yg~~~~~~~~~~~v~~~lk~~~~~~~~~VRiY~~-------------d~-------~vl~A~~~~gi~V~lGv~~ 82 (344)
..|++-. ..+.. ..++.++.+++ .|++.||+.-. +. .+|++|++.||+|+|.+..
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~---~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKA---LGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHH---TTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHH---CCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4566655 22111 56778888888 99999999721 11 4789999999999999876
Q ss_pred Cc----hhHhhcCHHHHHHHHHH---hc-ccccCCCCCcceEEEEeecccccCCCC--------HhHHHHHHHHHHHHHH
Q 043818 83 QD----LAQMAGSMDYTRNWVRE---FV-TPYTKGGNGTLKLRYITAGNEIIPGTE--------AVYVLPAMKNIQQVLE 146 (344)
Q Consensus 83 ~~----~~~~~~~~~~a~~wv~~---~v-~~~~~~~~~~~~I~~I~VGNE~l~~~~--------~~~L~~~i~~v~~aL~ 146 (344)
.. ............+|+++ .+ ..|.. ...|.++=+.||+..... ...+.+.++.+-++++
T Consensus 85 ~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~----~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir 160 (281)
T PF00150_consen 85 APGWANGGDGYGNNDTAQAWFKSFWRALAKRYKD----NPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIR 160 (281)
T ss_dssp STTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTT----TTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHH
T ss_pred CccccccccccccchhhHHHHHhhhhhhccccCC----CCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHH
Confidence 41 01111222333334333 23 23322 355779999999997632 3678889999999999
Q ss_pred hCCCC
Q 043818 147 QENVP 151 (344)
Q Consensus 147 ~~gl~ 151 (344)
+.+-+
T Consensus 161 ~~~~~ 165 (281)
T PF00150_consen 161 AADPN 165 (281)
T ss_dssp HTTSS
T ss_pred hcCCc
Confidence 99863
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.91 E-value=0.0017 Score=60.88 Aligned_cols=211 Identities=13% Similarity=0.089 Sum_probs=113.2
Q ss_pred hHHHHHhhCCCeEE--EeecCCchhHhhcC------HHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCC------
Q 043818 64 EVLSALATSNLSVC--LGVKNQDLAQMAGS------MDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGT------ 129 (344)
Q Consensus 64 ~vl~A~~~~gi~V~--lGv~~~~~~~~~~~------~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~------ 129 (344)
.+++.+++.||+|- .-+|....+....+ .+...++|++.+..| ...|..+-|.||++..+
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry------~g~i~~wdV~NE~~~~~~~~~~~ 93 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY------KGKIYAWDVVNEALHDNGSGLRR 93 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh------CCcceEEEEeeecccCCCccccc
Confidence 46777788888873 22565443333221 233455666666666 35688999999998642
Q ss_pred -CHhHHH--HHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccchhhHHHHHHHHHHhhhcCCc---eeeeccC
Q 043818 130 -EAVYVL--PAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAP---LMINVYP 203 (344)
Q Consensus 130 -~~~~L~--~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~~~---~~vNiyP 203 (344)
.-...+ .+|...-+..++.. .++++-.-+ .++.. ++ .-...+..+++.|.+.+-| |++..|-
T Consensus 94 ~~w~~~~G~~~i~~af~~ar~~~-P~a~l~~Nd-y~~~~---~~-------~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~ 161 (254)
T smart00633 94 SVWYQILGEDYIEKAFRYAREAD-PDAKLFYND-YNTEE---PN-------AKRQAIYELVKKLKAKGVPIDGIGLQSHL 161 (254)
T ss_pred chHHHhcChHHHHHHHHHHHHhC-CCCEEEEec-cCCcC---cc-------HHHHHHHHHHHHHHHCCCccceeeeeeee
Confidence 111111 33444444444333 234443321 11111 10 0123455666666665443 3333331
Q ss_pred ccccCCCCCccCcccccccCCCccccCCCccchhhhHHHHHHHHHHHHHhcCCCCceEEEeeeccCCCCCCCCCCCHHHH
Q 043818 204 YFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKVVVTETGWPSAGSNLPHASVENA 283 (344)
Q Consensus 204 yf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n~fd~~~d~~~~a~~k~~g~~~~~vvItETGWPs~G~~~a~as~~na 283 (344)
+.+. + + ++.+...|+++ +.-+++|+|||.+-|..+ +.+.|
T Consensus 162 ~~~~---~-------------------------~-----~~~~~~~l~~~-~~~g~pi~iTE~dv~~~~------~~~~q 201 (254)
T smart00633 162 SLGS---P-------------------------N-----IAEIRAALDRF-ASLGLEIQITELDISGYP------NPQAQ 201 (254)
T ss_pred cCCC---C-------------------------C-----HHHHHHHHHHH-HHcCCceEEEEeecCCCC------cHHHH
Confidence 1100 0 0 12233344444 334799999999988652 34788
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCceeeecCCCceeccC
Q 043818 284 KTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNE-NQKPEGTEQNFGSFYPNLQEVYPL 342 (344)
Q Consensus 284 ~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~fDe-~wK~g~~E~~wGlf~~n~~~ky~l 342 (344)
+.+++.++..+.+. | . ...+++..+.|. .|.++ .+-|||+.|++||=.+
T Consensus 202 A~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~---~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 202 AADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG---GAPLLFDANYQPKPAY 251 (254)
T ss_pred HHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC---CCceeECCCCCCChhh
Confidence 88999999988742 2 1 233445565553 35432 4779999999988543
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.84 E-value=0.027 Score=52.41 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=91.7
Q ss_pred ceEEEEeecccccCCC----CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccchhhHHHHHHHHHH
Q 043818 114 LKLRYITAGNEIIPGT----EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKF 189 (344)
Q Consensus 114 ~~I~~I~VGNE~l~~~----~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldf 189 (344)
..++.|..=||+=... ++++.+...++..+.|+.. .+++..+.... ....+|+.. .-|.+.++-
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~---~~~l~sPa~~~--~~~~~~~g~-------~Wl~~F~~~ 131 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP---GVKLGSPAVAF--TNGGTPGGL-------DWLSQFLSA 131 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC---CcEEECCeecc--cCCCCCCcc-------HHHHHHHHh
Confidence 4678889889996543 5777788777777777653 36776653210 000011111 122221111
Q ss_pred hh--hcCCceeeeccCccccCCCCCccCcccccccCCCccccCCCccchhhhHHHHHHHHHHHHHhcCCCCceEEEeeec
Q 043818 190 VY--SKGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKVVVTETG 267 (344)
Q Consensus 190 L~--~~~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n~fd~~~d~~~~a~~k~~g~~~~~vvItETG 267 (344)
.. -.-|++.+|.| ..+. .-|...++. ..++. | |||+|||.|
T Consensus 132 ~~~~~~~D~iavH~Y-----~~~~-------------------------~~~~~~i~~---~~~~~-~---kPIWITEf~ 174 (239)
T PF11790_consen 132 CARGCRVDFIAVHWY-----GGDA-------------------------DDFKDYIDD---LHNRY-G---KPIWITEFG 174 (239)
T ss_pred cccCCCccEEEEecC-----CcCH-------------------------HHHHHHHHH---HHHHh-C---CCEEEEeec
Confidence 11 13345655555 1100 122233333 23343 3 999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEEEeecCCCCCCCCCCceeeecCCCce
Q 043818 268 WPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNENQKPEGTEQNFGSFYPNLQE 338 (344)
Q Consensus 268 WPs~G~~~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~fDe~wK~g~~E~~wGlf~~n~~~ 338 (344)
+...+. ..+.+.++.|++..+..+.+. +. --.++||...++. . .....-.|++.+|++
T Consensus 175 ~~~~~~---~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~~~~~~-~--~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 175 CWNGGS---QGSDEQQASFLRQALPWLDSQ------PY-VERYAWFGFMNDG-S--GVNPNSALLDADGSL 232 (239)
T ss_pred ccCCCC---CCCHHHHHHHHHHHHHHHhcC------CC-eeEEEeccccccc-C--CCccccccccCCCCc
Confidence 887322 588899999999999998742 22 3467888833322 2 345566777777754
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.73 E-value=0.037 Score=52.85 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=55.9
Q ss_pred eeeEEecCCCCCC---CCHHHHHHHHhhhhcCCCCEEEEccC--ChhHHHHHhhCCCeEEEeecCCch---hHh------
Q 043818 23 TVGINYGRLGNNL---PPPARVVEFLTKDLNYAIPSVRIFDP--EPEVLSALATSNLSVCLGVKNQDL---AQM------ 88 (344)
Q Consensus 23 ~~Gv~Yg~~~~~~---~~~~~v~~~lk~~~~~~~~~VRiY~~--d~~vl~A~~~~gi~V~lGv~~~~~---~~~------ 88 (344)
..|+|+......+ ++.+...++++.++..|++.||+... ++..+.+|-..||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 4699988754332 44555555555555599999999643 468999999999999987765110 000
Q ss_pred hcC---HHHHHHHHHHhcccccCCCCCcceEEEEeecccc
Q 043818 89 AGS---MDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEI 125 (344)
Q Consensus 89 ~~~---~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~ 125 (344)
..+ .+.....+++.|..+.. ---|-.=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~N----HPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRN----HPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-----TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcC----cCchheeecCccC
Confidence 011 12233345556655432 2456678899999
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=96.04 E-value=1.4 Score=44.53 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=33.2
Q ss_pred HHHHHHHhhhhcCCCCEEEEcc------------CCh-------hHHHHHhhCCCeEEEeecCCch
Q 043818 39 ARVVEFLTKDLNYAIPSVRIFD------------PEP-------EVLSALATSNLSVCLGVKNQDL 85 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY~------------~d~-------~vl~A~~~~gi~V~lGv~~~~~ 85 (344)
++.+++|+. .|++++|+=- .|+ .++..+.+.||++++.+.--++
T Consensus 57 ~eDi~l~~~---~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 57 EEDVALMKE---LGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHHH---cCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 677788888 8999988631 121 5899999999999999954443
No 12
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=95.97 E-value=0.51 Score=46.63 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhcCCCCEEEEccC-------C---------hhHHHHHhhCCCeEEEeecCCchhHh--------------
Q 043818 39 ARVVEFLTKDLNYAIPSVRIFDP-------E---------PEVLSALATSNLSVCLGVKNQDLAQM-------------- 88 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY~~-------d---------~~vl~A~~~~gi~V~lGv~~~~~~~~-------------- 88 (344)
++++++||. .|++.|||-.. . ..+|..+++.||+|+|+++....+..
T Consensus 13 ~~d~~~m~~---~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~ 89 (374)
T PF02449_consen 13 EEDLRLMKE---AGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDAD 89 (374)
T ss_dssp HHHHHHHHH---HT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TT
T ss_pred HHHHHHHHH---cCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCC
Confidence 555666666 89999997322 1 15888899999999999965422111
Q ss_pred ------------hcC----HHHHHHHHHHhcccccCCCCCcceEEEEeecccccC
Q 043818 89 ------------AGS----MDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIP 127 (344)
Q Consensus 89 ------------~~~----~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~ 127 (344)
.-+ .+.+.+.++..+..|.. ...|.++-|+||.-.
T Consensus 90 g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~----~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 90 GRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD----HPAVIGWQIDNEPGY 140 (374)
T ss_dssp TSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT----TTTEEEEEECCSTTC
T ss_pred CCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc----cceEEEEEeccccCc
Confidence 000 13344445544455543 457899999999754
No 13
>PRK09936 hypothetical protein; Provisional
Probab=95.27 E-value=3 Score=40.06 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=46.2
Q ss_pred eeeEEecCCCCC-CCCHHHHHHHHhhhhcCCCCEEEEc-----cCC--------hhHHHHHhhCCCeEEEeecCCc
Q 043818 23 TVGINYGRLGNN-LPPPARVVEFLTKDLNYAIPSVRIF-----DPE--------PEVLSALATSNLSVCLGVKNQD 84 (344)
Q Consensus 23 ~~Gv~Yg~~~~~-~~~~~~v~~~lk~~~~~~~~~VRiY-----~~d--------~~vl~A~~~~gi~V~lGv~~~~ 84 (344)
..|+=|-|.+.| --++++..++++.++..|++.+=+= +.| .+.|+++.+.||+|.||++.|+
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 356679999887 4677777777766666899766542 222 2688999999999999999874
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=94.90 E-value=0.17 Score=51.62 Aligned_cols=279 Identities=15% Similarity=0.165 Sum_probs=128.7
Q ss_pred HHHHHHHhhhhcCCCCEEEEc--------c-----CCh-------hHHHHHhhCCCeEEEeecCCchhHh-h-----cCH
Q 043818 39 ARVVEFLTKDLNYAIPSVRIF--------D-----PEP-------EVLSALATSNLSVCLGVKNQDLAQM-A-----GSM 92 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY--------~-----~d~-------~vl~A~~~~gi~V~lGv~~~~~~~~-~-----~~~ 92 (344)
++++++||+ .|++.-|.= + .|+ +++..++..||+.+|.+.--+++.. . .++
T Consensus 61 ~eDi~l~~~---lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~ 137 (455)
T PF00232_consen 61 KEDIALMKE---LGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNR 137 (455)
T ss_dssp HHHHHHHHH---HT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGST
T ss_pred hHHHHHHHh---hccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCH
Confidence 788888888 799988864 1 121 5899999999999999986554431 1 122
Q ss_pred HHHH---HHHHHhcccccCCCCCcceEEEEeecccccCC-------C-------C-------HhHHHHHHHHHHHHHHhC
Q 043818 93 DYTR---NWVREFVTPYTKGGNGTLKLRYITAGNEIIPG-------T-------E-------AVYVLPAMKNIQQVLEQE 148 (344)
Q Consensus 93 ~~a~---~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~-------~-------~-------~~~L~~~i~~v~~aL~~~ 148 (344)
+..+ +..+.-+..| .+.|+.-+.=||...- + + ...++-+-..+.+++++.
T Consensus 138 ~~~~~F~~Ya~~~~~~~------gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~ 211 (455)
T PF00232_consen 138 ETVDWFARYAEFVFERF------GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEK 211 (455)
T ss_dssp HHHHHHHHHHHHHHHHH------TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhc
Confidence 2221 1122222334 2567777777887631 1 1 222455555555666665
Q ss_pred CCCCeeEeeeecccccc--cccCC---------------------CCcccchhhHHHHH----------HHHHHhhhcCC
Q 043818 149 NVPNVGVSTVLSAAALG--SSYPP---------------------SNGSFATEVATTLN----------EISKFVYSKGA 195 (344)
Q Consensus 149 gl~~IkVsT~~~~~~~~--~~~pp---------------------s~g~f~~~~~~~l~----------~~ldfL~~~~~ 195 (344)
+ .+.+|+.++...... +..++ -.|.|.......+. +-++.|..+.|
T Consensus 212 ~-~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~D 290 (455)
T PF00232_consen 212 Y-PDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSID 290 (455)
T ss_dssp T-CTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTS
T ss_pred c-cceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccch
Confidence 5 345677665543221 00011 11222211111111 11334567799
Q ss_pred ceeeeccCccccCCCC-CccCcccccccCC------CccccCCCccchhhhHHHHHHHHHHHHHhcCCCCceEEEeeecc
Q 043818 196 PLMINVYPYFTLASDP-QQVTLDYASFRST------TPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKVVVTETGW 268 (344)
Q Consensus 196 ~~~vNiyPyf~~~~~~-~~~~~~~a~f~~~------~~v~~~~~~~y~n~fd~~~d~~~~a~~k~~g~~~~~vvItETGW 268 (344)
++++|-|.=.--...+ ......+...... .....+.+..+ .=....+.+.. +.+ .++++||+|||.|+
T Consensus 291 FlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i--~P~Gl~~~L~~-l~~--~Y~~~pI~ITENG~ 365 (455)
T PF00232_consen 291 FLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEI--YPEGLRDVLRY-LKD--RYGNPPIYITENGI 365 (455)
T ss_dssp EEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBB--ETHHHHHHHHH-HHH--HHTSSEEEEEEE--
T ss_pred hhhhccccceeeccCccccccccccCCccccccccccccccccCccc--ccchHhhhhhh-hcc--ccCCCcEEEecccc
Confidence 9999988532222111 0111111100000 00011112111 01112222222 322 26779999999999
Q ss_pred CCCCCCCCCC-----CHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEEEeecCC-CCCCCCCCceeeecCC------C
Q 043818 269 PSAGSNLPHA-----SVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNEN-QKPEGTEQNFGSFYPN------L 336 (344)
Q Consensus 269 Ps~G~~~a~a-----s~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~fDe~-wK~g~~E~~wGlf~~n------~ 336 (344)
+......... -+..-+.+++.+.+.+. .|-+ -.-+|..++.|-- |-. +..+.|||++.| |
T Consensus 366 ~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~-----V~GY~~WSl~Dn~Ew~~-Gy~~rfGl~~VD~~~~~~R 437 (455)
T PF00232_consen 366 GDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVN-----VRGYFAWSLLDNFEWAE-GYKKRFGLVYVDFFDTLKR 437 (455)
T ss_dssp -EETTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-E-----EEEEEEETSB---BGGG-GGGSE--SEEEETTTTTEE
T ss_pred cccccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCC-----eeeEeeecccccccccc-CccCccCceEEcCCCCcCe
Confidence 8776421111 11223344444444443 3421 1245556888743 322 578999999999 7
Q ss_pred ceec
Q 043818 337 QEVY 340 (344)
Q Consensus 337 ~~ky 340 (344)
+||-
T Consensus 438 ~pK~ 441 (455)
T PF00232_consen 438 TPKK 441 (455)
T ss_dssp EEBH
T ss_pred eecc
Confidence 7774
No 15
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=87.51 E-value=14 Score=36.37 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=59.0
Q ss_pred CCCEEEEccC-ChhHHHHHhhCCCeEEEeecCCchhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCC--
Q 043818 52 AIPSVRIFDP-EPEVLSALATSNLSVCLGVKNQDLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPG-- 128 (344)
Q Consensus 52 ~~~~VRiY~~-d~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~-- 128 (344)
.++.|-+|+. +++++..+++.|++|++..-.. .. ...++.....++++.| .+.. ...+.+|-+==|-...
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv-~~~~----~~gfDGIdIDwE~p~~~~ 127 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKV-ELAK----SQFMDGINIDIEQPITKG 127 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHH-HHHH----HhCCCeEEEcccCCCCCC
Confidence 3678888854 6789999999999999864322 22 2345555556666544 2332 2334455554444322
Q ss_pred -CCHhHHHHHHHHHHHHHHhCCC
Q 043818 129 -TEAVYVLPAMKNIQQVLEQENV 150 (344)
Q Consensus 129 -~~~~~L~~~i~~v~~aL~~~gl 150 (344)
.+...+...|+++|++|.+.|.
T Consensus 128 ~~d~~~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 128 SPEYYALTELVKETTKAFKKENP 150 (358)
T ss_pred cchHHHHHHHHHHHHHHHhhcCC
Confidence 2356788999999999988764
No 16
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=86.34 E-value=8.6 Score=36.81 Aligned_cols=83 Identities=8% Similarity=0.099 Sum_probs=53.3
Q ss_pred hhHHHHHhhCCCeEEEeecCCc--------hhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCCCHhHH
Q 043818 63 PEVLSALATSNLSVCLGVKNQD--------LAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYV 134 (344)
Q Consensus 63 ~~vl~A~~~~gi~V~lGv~~~~--------~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L 134 (344)
+.++.++++.+++|++.|-+.+ ...+.++++.....++ +|..+.. ...+.+|-+-=|.+...+...+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~----~~~~DGidiDwE~~~~~d~~~~ 122 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAK----KYGYDGVNIDFENVPPEDREAY 122 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHH----HhCCCcEEEecccCCHHHHHHH
Confidence 5788888889999998886532 1344555554444433 3333332 2334566655566544456678
Q ss_pred HHHHHHHHHHHHhCCC
Q 043818 135 LPAMKNIQQVLEQENV 150 (344)
Q Consensus 135 ~~~i~~v~~aL~~~gl 150 (344)
...++++|.+|.+.|+
T Consensus 123 ~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 123 TQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHhhhcCc
Confidence 9999999999987775
No 17
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=85.05 E-value=32 Score=33.32 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=115.2
Q ss_pred hHHHHHhhCCCeEE--EeecCCchhHhhc-----C-------HHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCC
Q 043818 64 EVLSALATSNLSVC--LGVKNQDLAQMAG-----S-------MDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGT 129 (344)
Q Consensus 64 ~vl~A~~~~gi~V~--lGv~~~~~~~~~~-----~-------~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~ 129 (344)
.+++-++.+||+|- .=||-...+..-. + .+..+++|++.+..|.. ...|...=|=||++..+
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~----~g~i~~WDVvNE~i~~~ 138 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKD----KGRIYAWDVVNEAIDDD 138 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTT----TTTESEEEEEES-B-TT
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhcc----ccceEEEEEeeecccCC
Confidence 47788889999885 5567654332211 1 22334556665566631 13788888889999752
Q ss_pred C---------------HhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccchhhHHHHHHHHHHhhhcC
Q 043818 130 E---------------AVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKG 194 (344)
Q Consensus 130 ~---------------~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~ 194 (344)
. +..+..+.+-.|++..++ +.-.-+ .+++ .+.-+..+..+++.|.+.+
T Consensus 139 ~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a-----~L~~ND-y~~~-----------~~~k~~~~~~lv~~l~~~g 201 (320)
T PF00331_consen 139 GNPGGLRDSPWYDALGPDYIADAFRAAREADPNA-----KLFYND-YNIE-----------SPAKRDAYLNLVKDLKARG 201 (320)
T ss_dssp SSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTS-----EEEEEE-SSTT-----------STHHHHHHHHHHHHHHHTT
T ss_pred CccccccCChhhhcccHhHHHHHHHHHHHhCCCc-----EEEecc-cccc-----------chHHHHHHHHHHHHHHhCC
Confidence 1 345666777777777533 332221 1111 1111356777888887765
Q ss_pred Cc---eeeeccCccccCCCCCccCcccccccCCCccccCCCccchhhhHHHHHHHHHHHHHhcCCCCceEEEeeeccCCC
Q 043818 195 AP---LMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKVVVTETGWPSA 271 (344)
Q Consensus 195 ~~---~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n~fd~~~d~~~~a~~k~~g~~~~~vvItETGWPs~ 271 (344)
-| |++..| |... .. .+.+...|+++ ..-+++|.|||--=...
T Consensus 202 vpIdgIG~Q~H--~~~~----------------------------~~----~~~i~~~l~~~-~~~Gl~i~ITElDv~~~ 246 (320)
T PF00331_consen 202 VPIDGIGLQSH--FDAG----------------------------YP----PEQIWNALDRF-ASLGLPIHITELDVRDD 246 (320)
T ss_dssp HCS-EEEEEEE--EETT----------------------------SS----HHHHHHHHHHH-HTTTSEEEEEEEEEESS
T ss_pred Cccceechhhc--cCCC----------------------------CC----HHHHHHHHHHH-HHcCCceEEEeeeecCC
Confidence 44 233222 1100 01 23344456665 44569999999754433
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEE-EeecCC-CCCCCCCCceeeecCCCceec
Q 043818 272 GSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIF-ALFNEN-QKPEGTEQNFGSFYPNLQEVY 340 (344)
Q Consensus 272 G~~~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F-~~fDe~-wK~g~~E~~wGlf~~n~~~ky 340 (344)
..+......+.|+.+++.+++.+.+.. |. .+..+.+ .+.|.. |.....-.+=+||+.|.+||-
T Consensus 247 ~~~~~~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 247 DNPPDAEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKP 311 (320)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-H
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCH
Confidence 322113456778889999999987521 01 2444444 566643 554211234489999999984
No 18
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=79.29 E-value=5 Score=41.11 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=127.8
Q ss_pred HHHHHHHhhhhcCCCCEEEEccCC---h-----------h------HHHHHhhCCCeEEEeecCC--ch-----------
Q 043818 39 ARVVEFLTKDLNYAIPSVRIFDPE---P-----------E------VLSALATSNLSVCLGVKNQ--DL----------- 85 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY~~d---~-----------~------vl~A~~~~gi~V~lGv~~~--~~----------- 85 (344)
.++..+++.+...|++.+|+|-.| | . .+.-|...+|||++..=+. ..
T Consensus 26 ~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 26 REIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhhhcccccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 356667777666889999999332 1 1 2444566899987655332 10
Q ss_pred ----hHhhcCH---HHHHHHHHHhcccccCCCCCcceEEEEeecccccCCC--CHhHHHHHHHHHHHHHHhCCCCC-eeE
Q 043818 86 ----AQMAGSM---DYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGT--EAVYVLPAMKNIQQVLEQENVPN-VGV 155 (344)
Q Consensus 86 ----~~~~~~~---~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~--~~~~L~~~i~~v~~aL~~~gl~~-IkV 155 (344)
+...-++ ..-.+.|..-|.+|.. ...|.+-..-||.+.+. ++..++...+.+.+.++..+=++ |.|
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~----~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsv 181 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKL----DPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSV 181 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhcc----ChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeec
Confidence 0011111 1224567777777754 46788888889977643 56777888888888887666432 555
Q ss_pred eeeecccccccccCCCCcccchhhHHHHHHHHHHhhhcCCceeeeccCccccCCCCCccCcccccccCCCccccCCCccc
Q 043818 156 STVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNY 235 (344)
Q Consensus 156 sT~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y 235 (344)
+-+... |..--|+ .+.| .+|| -+.|+||+|+... -....+. |
T Consensus 182 GD~~sp--~~~~~py-N~r~----------~vDy-------a~~hLY~hyd~sl---~~r~s~~---------------y 223 (587)
T COG3934 182 GDPASP--WPQYAPY-NARF----------YVDY-------AANHLYRHYDTSL---VSRVSTV---------------Y 223 (587)
T ss_pred CCcCCc--ccccCCc-ccce----------eecc-------ccchhhhhccCCh---hheeeee---------------e
Confidence 444322 2221122 2222 2334 7889999776542 0111111 1
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEEEe
Q 043818 236 FNLFDSIVDSFIAAMVKAVGKEDVKVVVTETGWPSAGSNLPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFAL 315 (344)
Q Consensus 236 ~n~fd~~~d~~~~a~~k~~g~~~~~vvItETGWPs~G~~~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~ 315 (344)
-. ..+| +.+. -+-+||+.-|-|-|++-+. ++.+.|.-.+.. +....| .+.-...|+=
T Consensus 224 g~---~~l~-----i~~~--~g~~pV~leefGfsta~g~------e~s~ayfiw~~l-al~~gg------dGaLiwclsd 280 (587)
T COG3934 224 GK---PYLD-----IPTI--MGWQPVNLEEFGFSTAFGQ------ENSPAYFIWIRL-ALDTGG------DGALIWCLSD 280 (587)
T ss_pred cc---hhhc-----cchh--cccceeeccccCCcccccc------cccchhhhhhhh-HHhhcC------CceEEEEecC
Confidence 11 0111 1111 1248999999999987442 112222222222 221111 1233344554
Q ss_pred ecCCCCC-----CCCCCceeeecCCCceecc
Q 043818 316 FNENQKP-----EGTEQNFGSFYPNLQEVYP 341 (344)
Q Consensus 316 fDe~wK~-----g~~E~~wGlf~~n~~~ky~ 341 (344)
|-+--.. +..|-.|||...|+.+|+.
T Consensus 281 f~~gsdd~ey~w~p~el~fgiIradgpek~~ 311 (587)
T COG3934 281 FHLGSDDSEYTWGPMELEFGIIRADGPEKID 311 (587)
T ss_pred CccCCCCCCCccccccceeeeecCCCchhhh
Confidence 4321111 3678999999999999985
No 19
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=78.16 E-value=20 Score=40.54 Aligned_cols=101 Identities=13% Similarity=0.029 Sum_probs=59.2
Q ss_pred eeeEEecCCCC---CCCCHHHHHHHHhhhhcCCCCEEEEccC--ChhHHHHHhhCCCeEEEeecCCc-----hhHhhcCH
Q 043818 23 TVGINYGRLGN---NLPPPARVVEFLTKDLNYAIPSVRIFDP--EPEVLSALATSNLSVCLGVKNQD-----LAQMAGSM 92 (344)
Q Consensus 23 ~~Gv~Yg~~~~---~~~~~~~v~~~lk~~~~~~~~~VRiY~~--d~~vl~A~~~~gi~V~lGv~~~~-----~~~~~~~~ 92 (344)
..|+|+-.... ...+++++.++|+.+|..|++.||+-.. ++..++.|-..||-|+--++... ...+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 35788754322 2346666555555555599999999532 46789999999999986654310 00111122
Q ss_pred ---HHHHHHHHHhcccccCCCCCcceEEEEeecccccC
Q 043818 93 ---DYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIP 127 (344)
Q Consensus 93 ---~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~ 127 (344)
++..+.+++.|..... .--|..=++|||.-.
T Consensus 432 ~~~~~~~~~~~~mV~RdrN----HPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRN----HPSIIIWSLGNESGH 465 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCC----CCEEEEEeCccCCCc
Confidence 1222234455544321 346778899999754
No 20
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=76.88 E-value=26 Score=39.60 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=57.7
Q ss_pred eeeEEecCCCCC---CCCHHHHHHHHhhhhcCCCCEEEEccC--ChhHHHHHhhCCCeEEEeecCCc--------hhHhh
Q 043818 23 TVGINYGRLGNN---LPPPARVVEFLTKDLNYAIPSVRIFDP--EPEVLSALATSNLSVCLGVKNQD--------LAQMA 89 (344)
Q Consensus 23 ~~Gv~Yg~~~~~---~~~~~~v~~~lk~~~~~~~~~VRiY~~--d~~vl~A~~~~gi~V~lGv~~~~--------~~~~~ 89 (344)
..|+|+-..... ..+++++.++|+.+|..|++.||+-.. ++..+.+|-..||-|+--++... ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 358886543221 234555555555555599999998643 35689999999999887542110 00111
Q ss_pred cCH---HHHHHHHHHhcccccCCCCCcceEEEEeecccccC
Q 043818 90 GSM---DYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIP 127 (344)
Q Consensus 90 ~~~---~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~ 127 (344)
.++ +...+.+++.|..... ---|..=++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrN----HPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKN----HPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCC----CCEEEEEECccCccc
Confidence 122 1112335555554422 346778888999854
No 21
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=74.26 E-value=5.2 Score=41.03 Aligned_cols=46 Identities=11% Similarity=0.343 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhcCCCCEEEE-------c--c---CCh-------hHHHHHhhCCCeEEEeecCCchhH
Q 043818 39 ARVVEFLTKDLNYAIPSVRI-------F--D---PEP-------EVLSALATSNLSVCLGVKNQDLAQ 87 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRi-------Y--~---~d~-------~vl~A~~~~gi~V~lGv~~~~~~~ 87 (344)
+|++++|++ .|++.-|. + + .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 57 ~eDi~L~~~---lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEE---FGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHH---hCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 788889998 78877664 3 1 132 689999999999999997666543
No 22
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=73.36 E-value=12 Score=33.17 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=45.8
Q ss_pred HHHHHhh--CCCeEEEeecCCchh---HhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCC---CHhHHHH
Q 043818 65 VLSALAT--SNLSVCLGVKNQDLA---QMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGT---EAVYVLP 136 (344)
Q Consensus 65 vl~A~~~--~gi~V~lGv~~~~~~---~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~---~~~~L~~ 136 (344)
-++.+++ .|++|++.|...... .+..+.+..+..++ ++..+.. ...+.+|-+==|..... +...++.
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~----~~~~DGidiD~E~~~~~~~~~~~~~~~ 128 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLK----TYGFDGVDIDWEYPGAADNSDRENFIT 128 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHH----HcCCCceEEeeeCCCCcCccHHHHHHH
Confidence 3555555 499999888754322 23445444444333 3333332 22344444433443322 2578999
Q ss_pred HHHHHHHHHHhCCC
Q 043818 137 AMKNIQQVLEQENV 150 (344)
Q Consensus 137 ~i~~v~~aL~~~gl 150 (344)
.|+.+|+++.+.++
T Consensus 129 ll~~lr~~l~~~~~ 142 (210)
T cd00598 129 LLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999987654
No 23
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=73.19 E-value=50 Score=30.56 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=47.5
Q ss_pred hHHHHHhhCCCeEEEeecCCch---hHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCCCHhHHHHHHHH
Q 043818 64 EVLSALATSNLSVCLGVKNQDL---AQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKN 140 (344)
Q Consensus 64 ~vl~A~~~~gi~V~lGv~~~~~---~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~~i~~ 140 (344)
..+++++..|++|++.|-.... ..+..++...+.++++.+ .+.. ...+.+|-+==|..... ...+...+++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv-~~~~----~~~~DGIdiDwE~~~~~-~~~~~~fv~~ 123 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKII-NYVV----SYNLDGIDVDLEGPDVT-FGDYLVFIRA 123 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHH-HHHH----HhCCCceeEEeeccCcc-HhHHHHHHHH
Confidence 3567777789999988865421 224445555455444433 3322 12344554444443221 3567888999
Q ss_pred HHHHHHhCCC
Q 043818 141 IQQVLEQENV 150 (344)
Q Consensus 141 v~~aL~~~gl 150 (344)
+|++|.+.|+
T Consensus 124 Lr~~l~~~~~ 133 (253)
T cd06545 124 LYAALKKEGK 133 (253)
T ss_pred HHHHHhhcCc
Confidence 9999987774
No 24
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=70.20 E-value=1.4e+02 Score=30.76 Aligned_cols=239 Identities=15% Similarity=0.168 Sum_probs=106.7
Q ss_pred CCCCEEEEccCC-----------------------hhHHHHHhhCCCeEEEeecCCchhHhh----------------cC
Q 043818 51 YAIPSVRIFDPE-----------------------PEVLSALATSNLSVCLGVKNQDLAQMA----------------GS 91 (344)
Q Consensus 51 ~~~~~VRiY~~d-----------------------~~vl~A~~~~gi~V~lGv~~~~~~~~~----------------~~ 91 (344)
.||++||+.+.- -.++..+.+.|++-++-+-... ..++ .+
T Consensus 52 ~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p-~~~~~~~~~~~~~~~~~~pp~~ 130 (486)
T PF01229_consen 52 LGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMP-MALASGYQTVFWYKGNISPPKD 130 (486)
T ss_dssp S--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB--GGGBSS--EETTTTEE-S-BS-
T ss_pred cCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEech-hhhcCCCCccccccCCcCCccc
Confidence 889999998431 1478888999998876553211 0111 12
Q ss_pred HHHHHHHH----HHhcccccCCCCCcceEE--EEeecccccCC-----CCHhHHHHHHHHHHHHHHhCCCCCeeEeeeec
Q 043818 92 MDYTRNWV----REFVTPYTKGGNGTLKLR--YITAGNEIIPG-----TEAVYVLPAMKNIQQVLEQENVPNVGVSTVLS 160 (344)
Q Consensus 92 ~~~a~~wv----~~~v~~~~~~~~~~~~I~--~I~VGNE~l~~-----~~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~ 160 (344)
.+...+.| +..+..|.. ..|+ ..=|=||+=.. +...+-....+.+.++|++.. ..++|+-+-.
T Consensus 131 ~~~W~~lv~~~~~h~~~RYG~-----~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~-p~~~vGGp~~ 204 (486)
T PF01229_consen 131 YEKWRDLVRAFARHYIDRYGI-----EEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD-PELKVGGPAF 204 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhcCC-----ccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC-CCCcccCccc
Confidence 22222223 333333321 1111 34568886433 235567777788888888765 4588887611
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHhhhc---CCceeeeccCccccCCCCCccCcccccccCCCccccCCCccchh
Q 043818 161 AAALGSSYPPSNGSFATEVATTLNEISKFVYSK---GAPLMINVYPYFTLASDPQQVTLDYASFRSTTPVAQDGDRNYFN 237 (344)
Q Consensus 161 ~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~---~~~~~vNiyPyf~~~~~~~~~~~~~a~f~~~~~v~~~~~~~y~n 237 (344)
..+ + ...+...++|+.+. -|++..|.||+-........ .... +. ....
T Consensus 205 ----~~~-------~----~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~---~~~~------~~-----~~~~ 255 (486)
T PF01229_consen 205 ----AWA-------Y----DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINEN---MYER------IE-----DSRR 255 (486)
T ss_dssp ----ETT------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS----EEEE------B-------HHH
T ss_pred ----ccc-------H----HHHHHHHHHHHhcCCCCCCEEEEEecccccccccchh---HHhh------hh-----hHHH
Confidence 000 0 12334455565542 25578888885322111000 0000 00 0111
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeeeccCCCCCC--CCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEE--
Q 043818 238 LFDSIVDSFIAAMVKAVGKEDVKVVVTETGWPSAGSN--LPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIF-- 313 (344)
Q Consensus 238 ~fd~~~d~~~~a~~k~~g~~~~~vvItETGWPs~G~~--~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F-- 313 (344)
+++. +..+...+... +.+++++.+|| |.+.-.+ .-.-|.-++.-..+++++.... .++.|-+
T Consensus 256 ~~~~-~~~~~~~~~~e-~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt 321 (486)
T PF01229_consen 256 LFPE-LKETRPIINDE-ADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWT 321 (486)
T ss_dssp HHHH-HHHHHHHHHTS-SSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-
T ss_pred HHHH-HHHHHHHHhhc-cCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccc
Confidence 2221 22222233333 67889999999 7765542 1124445555556656666541 1333332
Q ss_pred --EeecCCCCC-CCCCCceeeecCCCcee
Q 043818 314 --ALFNENQKP-EGTEQNFGSFYPNLQEV 339 (344)
Q Consensus 314 --~~fDe~wK~-g~~E~~wGlf~~n~~~k 339 (344)
..|.|.--+ ..+-..|||++.+|-+|
T Consensus 322 ~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 322 FSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hhhhhhccCCCCCceecchhhhhccCCCc
Confidence 234443222 24566799999998665
No 25
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=69.02 E-value=85 Score=31.48 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=53.6
Q ss_pred hHHHHHhhCCCeEEEeecCCchhHhh-----------------cCHHHHHHHHHHhcccccCCCCCcceEEEEeeccccc
Q 043818 64 EVLSALATSNLSVCLGVKNQDLAQMA-----------------GSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEII 126 (344)
Q Consensus 64 ~vl~A~~~~gi~V~lGv~~~~~~~~~-----------------~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l 126 (344)
-.|+++++.|+..+++.-|+...-+. ...+.-...+.+-++.| . .....|++|.-=||+-
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~-~--~~GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHY-K--KWGINFDYISPFNEPQ 184 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHH-H--CTT--EEEEE--S-TT
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHH-H--hcCCccceeCCcCCCC
Confidence 47999999999999998887432221 11122233444444444 2 2247899999999998
Q ss_pred CCC----------CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecc
Q 043818 127 PGT----------EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSA 161 (344)
Q Consensus 127 ~~~----------~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~ 161 (344)
..+ +..+....|+.++++|++.||. .+|+..++.
T Consensus 185 ~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~-t~I~~~Ea~ 228 (384)
T PF14587_consen 185 WNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLS-TKISACEAG 228 (384)
T ss_dssp S-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S--EEEEEEES
T ss_pred CCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC-ceEEecchh
Confidence 752 4788899999999999999993 346666554
No 26
>PLN02814 beta-glucosidase
Probab=67.56 E-value=14 Score=38.42 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=42.5
Q ss_pred CCCceEEEeeeccCCCCCC--CCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCceeee
Q 043818 256 KEDVKVVVTETGWPSAGSN--LPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNE-NQKPEGTEQNFGSF 332 (344)
Q Consensus 256 ~~~~~vvItETGWPs~G~~--~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~fDe-~wK~g~~E~~wGlf 332 (344)
+++.||+|||-|++...++ ...-=++.-+.+++.+.+.+. .|-|. .-+|.-++.|- .|-.| .++.|||+
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V-----~GY~~WSllDnfEW~~G-y~~RfGLv 456 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDT-----RGYFVWSMIDLYELLGG-YTTSFGMY 456 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhcc-ccCccceE
Confidence 5556899999999754321 001222334444444444443 34322 23455588873 24444 89999999
Q ss_pred cCCCc
Q 043818 333 YPNLQ 337 (344)
Q Consensus 333 ~~n~~ 337 (344)
+.|..
T Consensus 457 yVD~~ 461 (504)
T PLN02814 457 YVNFS 461 (504)
T ss_pred EECCC
Confidence 99754
No 27
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=65.43 E-value=17 Score=37.43 Aligned_cols=45 Identities=7% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhcCCCCEEEE-------cc------CCh-------hHHHHHhhCCCeEEEeecCCchh
Q 043818 39 ARVVEFLTKDLNYAIPSVRI-------FD------PEP-------EVLSALATSNLSVCLGVKNQDLA 86 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRi-------Y~------~d~-------~vl~A~~~~gi~V~lGv~~~~~~ 86 (344)
++++++||. +|++.-|+ += .++ +++.+|.+.||+-+|.++--+++
T Consensus 70 ~eDi~Lm~~---lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 70 KEDIALFAE---MGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHHHH---cCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 788889988 78776654 41 232 58999999999999999766654
No 28
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=64.02 E-value=19 Score=37.17 Aligned_cols=46 Identities=9% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhcCCCCEEEE-------c--c----CCh-------hHHHHHhhCCCeEEEeecCCchhH
Q 043818 39 ARVVEFLTKDLNYAIPSVRI-------F--D----PEP-------EVLSALATSNLSVCLGVKNQDLAQ 87 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRi-------Y--~----~d~-------~vl~A~~~~gi~V~lGv~~~~~~~ 87 (344)
++++++|++ .|++.-|. + + .++ +++.+|.+.||+-+|.++--+++.
T Consensus 76 ~eDi~Lm~~---lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAE---MGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHH---cCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 788889988 78877664 3 1 132 589999999999999997655543
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=63.49 E-value=15 Score=32.25 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=31.8
Q ss_pred CHHHHHHHHhhhhcCCCCEEEE----------ccCC--------------hhHHHHHhhCCCeEEEeecCC
Q 043818 37 PPARVVEFLTKDLNYAIPSVRI----------FDPE--------------PEVLSALATSNLSVCLGVKNQ 83 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRi----------Y~~d--------------~~vl~A~~~~gi~V~lGv~~~ 83 (344)
++++-.++++.++..||+.|=+ |.++ ..+|+++.+.||+|++|++.+
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 4455555555544489987732 2221 157899999999999999975
No 30
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=62.90 E-value=20 Score=36.86 Aligned_cols=45 Identities=13% Similarity=0.386 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhcCCCCEEE-------Ecc------CCh-------hHHHHHhhCCCeEEEeecCCchh
Q 043818 39 ARVVEFLTKDLNYAIPSVR-------IFD------PEP-------EVLSALATSNLSVCLGVKNQDLA 86 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VR-------iY~------~d~-------~vl~A~~~~gi~V~lGv~~~~~~ 86 (344)
++++++|++ .|++.-| |+- .++ +++.++.+.||+.+|.++=-+++
T Consensus 72 ~EDI~Lm~e---lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 72 KEDIKLFAE---MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred HHHHHHHHH---cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 788899998 7877665 441 232 58999999999999999544443
No 31
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=62.71 E-value=20 Score=34.99 Aligned_cols=174 Identities=14% Similarity=0.179 Sum_probs=68.3
Q ss_pred hHHHH-HhhCCCeEEEeecCCchhHhhcCHHHHHHHHHHhcccccCCC-CCcceEEEEeecccccCCC-----CHhHHHH
Q 043818 64 EVLSA-LATSNLSVCLGVKNQDLAQMAGSMDYTRNWVREFVTPYTKGG-NGTLKLRYITAGNEIIPGT-----EAVYVLP 136 (344)
Q Consensus 64 ~vl~A-~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~-~~~~~I~~I~VGNE~l~~~-----~~~~L~~ 136 (344)
+.|.. +..+|.+|+.|+.--.-.....+....-.|=.+|-..++.-. ...-+|.+-=.|||.-..+ ++.++..
T Consensus 112 d~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyak 191 (319)
T PF03662_consen 112 DELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAK 191 (319)
T ss_dssp HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHH
T ss_pred HHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHH
Confidence 44555 457999999999742111100111333467666654432100 1124677888899965432 5888888
Q ss_pred HHHHHHHHHHhCCCC----CeeEeeeecccccccccCCCCcccchhhHHHHHHHHHHhhhc----CCceeeeccCccccC
Q 043818 137 AMKNIQQVLEQENVP----NVGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSK----GAPLMINVYPYFTLA 208 (344)
Q Consensus 137 ~i~~v~~aL~~~gl~----~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~----~~~~~vNiyPyf~~~ 208 (344)
....+|+.|+.. ++ +-.|.-+.. .|..+ .+. +||... -|.+.-|+|+ ....
T Consensus 192 D~~~Lr~il~~i-y~~~~~~P~v~gP~~-------------~~d~~---w~~---~FL~~~g~~~vD~vT~H~Y~-lg~g 250 (319)
T PF03662_consen 192 DFIQLRKILNEI-YKNALPGPLVVGPGG-------------FFDAD---WLK---EFLKASGPGVVDAVTWHHYN-LGSG 250 (319)
T ss_dssp HH---HHHHHHH-HHH-TT---EEEEEE-------------SS-GG---GHH---HHHHHTTTT--SEEEEEEEE-E--T
T ss_pred HHHHHHHHHHHH-HhcCCCCCeEECCCC-------------CCCHH---HHH---HHHHhcCCCccCEEEEEecC-CCCC
Confidence 888888888752 21 112333322 12221 222 344433 3567778874 3332
Q ss_pred CCCCccCcccccccCCCccccCCCccchhhhHHHHHHHHHHHHHhcCCCCceEEEeeeccCCCCC
Q 043818 209 SDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGKEDVKVVVTETGWPSAGS 273 (344)
Q Consensus 209 ~~~~~~~~~~a~f~~~~~v~~~~~~~y~n~fd~~~d~~~~a~~k~~g~~~~~vvItETGWPs~G~ 273 (344)
.++. . ++ .+.+ -.|-+.+..++..+...+++. .+++++|++|||=...|+
T Consensus 251 ~d~~-l-~~-~~l~----------p~~Ld~~~~~~~~~~~~v~~~--~p~~~~WlGEtg~Ay~gG 300 (319)
T PF03662_consen 251 RDPA-L-IE-DFLN----------PSYLDTLADTFQKLQQVVQEY--GPGKPVWLGETGSAYNGG 300 (319)
T ss_dssp T-TT---HH-HHTS------------HHHHHHHHHHHHH-----H--HH---EEEEEEEEESTT-
T ss_pred chHH-H-HH-HhcC----------hhhhhHHHHHHHHHhhhhccc--CCCCCeEEeCcccccCCC
Confidence 2221 0 11 1111 112233334444444445444 478999999999666554
No 32
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=61.61 E-value=1.9e+02 Score=29.97 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=53.4
Q ss_pred hCCCeEEEeecCCch-----hH------hhc---C--HHHHHHHHHHhcccccCCCCCcceEEEEeecccccCC------
Q 043818 71 TSNLSVCLGVKNQDL-----AQ------MAG---S--MDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPG------ 128 (344)
Q Consensus 71 ~~gi~V~lGv~~~~~-----~~------~~~---~--~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~------ 128 (344)
..+++|+...|--.. .+ +.. + .++-..++.+-|+.|.. . ...|-+|++.||+...
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--~-GI~i~aiT~QNEP~~~~~~~~~ 242 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--E-GIPIWAITPQNEPDNGSDPNYP 242 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC--T-T--ESEEESSSSCCGGGSTT-S
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH--C-CCCeEEEeccCCCCCCCCCCCC
Confidence 366999999985310 01 110 1 12334557777777743 2 3789999999999852
Q ss_pred C-----CHhHHHHHHHH-HHHHHHhCCC-CCeeEee
Q 043818 129 T-----EAVYVLPAMKN-IQQVLEQENV-PNVGVST 157 (344)
Q Consensus 129 ~-----~~~~L~~~i~~-v~~aL~~~gl-~~IkVsT 157 (344)
. .+.++...|++ +.-+|++.|+ .++|+=.
T Consensus 243 ~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 243 WPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp SC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 1 47788888886 9999999998 6788744
No 33
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=60.19 E-value=1e+02 Score=32.19 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCCCceEEEeeeccCCCCCC---C-----CCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEEEeecCC-CCCCCC
Q 043818 255 GKEDVKVVVTETGWPSAGSN---L-----PHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNEN-QKPEGT 325 (344)
Q Consensus 255 g~~~~~vvItETGWPs~G~~---~-----a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~fDe~-wK~g~~ 325 (344)
.++|.+|.|+|-|-+...+. . ...=++..+.|++.+.+.+.. .|. +...+|..++-|-. |.. +.
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~-Gy 476 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLD-GY 476 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhc-Cc
Confidence 47899999999999986542 1 123344555566666655542 121 12357777888743 443 46
Q ss_pred CCceeeecCC
Q 043818 326 EQNFGSFYPN 335 (344)
Q Consensus 326 E~~wGlf~~n 335 (344)
.-.|||++.|
T Consensus 477 ~~RFGlyyVD 486 (524)
T KOG0626|consen 477 KVRFGLYYVD 486 (524)
T ss_pred ccccccEEEe
Confidence 7899999963
No 34
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.19 E-value=34 Score=34.01 Aligned_cols=58 Identities=28% Similarity=0.445 Sum_probs=35.5
Q ss_pred chhhhHHHHHHHHHHHHHhcCCCCceEEEeeeccCCCCC----CCCCCCHHHHHHHHHHHHHhhhh
Q 043818 235 YFNLFDSIVDSFIAAMVKAVGKEDVKVVVTETGWPSAGS----NLPHASVENAKTYNSNLKKHIQT 296 (344)
Q Consensus 235 y~n~fd~~~d~~~~a~~k~~g~~~~~vvItETGWPs~G~----~~a~as~~na~~y~~~~i~~~~~ 296 (344)
|+|-|++.+--.-..+... |.+..+|+.| |||.|. +-...|-..++..++.+++.+..
T Consensus 125 fNntf~dav~R~aqI~~d~-g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDS-GNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCchhHHHHHHHHHHhhc-CCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 6666664332222222222 7788899988 999997 12245666666777777777654
No 35
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=55.96 E-value=2e+02 Score=29.32 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=70.3
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccCC--------------hhHHHHHhh-CCC-eEEEeecCCchhHhhcCHHHHHHHHH
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDPE--------------PEVLSALAT-SNL-SVCLGVKNQDLAQMAGSMDYTRNWVR 100 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~d--------------~~vl~A~~~-~gi-~V~lGv~~~~~~~~~~~~~~a~~wv~ 100 (344)
+++++++.++.+...|++.|.+.+.+ .++|+++.+ .|+ .+-++.-+. ..+. .+ +-
T Consensus 185 ~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p--~~i~--~e-----ll 255 (459)
T PRK14338 185 PLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHP--AWMT--DR-----LI 255 (459)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecCh--hhcC--HH-----HH
Confidence 45888887777666899999988732 146777766 354 343332111 1121 11 11
Q ss_pred HhcccccCCCCCcceEEEEeec----ccccCC----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCC
Q 043818 101 EFVTPYTKGGNGTLKLRYITAG----NEIIPG----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPS 171 (344)
Q Consensus 101 ~~v~~~~~~~~~~~~I~~I~VG----NE~l~~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps 171 (344)
+.+... + .....+.+| ++.+.+ + +..+.+..++.+|+.. .++.++|.. + -++|
T Consensus 256 ~~l~~~-~-----~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~-----pgi~i~~d~----I-vG~P-- 317 (459)
T PRK14338 256 HAVARL-P-----KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI-----PDVSLTTDI----I-VGHP-- 317 (459)
T ss_pred HHHhcc-c-----ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC-----CCCEEEEEE----E-EECC--
Confidence 222221 1 123445444 322221 2 5677777777777653 235565542 2 1233
Q ss_pred CcccchhhHHHHHHHHHHhhhcCCceeeeccCccc
Q 043818 172 NGSFATEVATTLNEISKFVYSKGAPLMINVYPYFT 206 (344)
Q Consensus 172 ~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~ 206 (344)
|. -...+.+.++|+.+.+ +-.+++++|--
T Consensus 318 -gE----T~ed~~~ti~~l~~l~-~~~v~i~~ysp 346 (459)
T PRK14338 318 -GE----TEEQFQRTYDLLEEIR-FDKVHIAAYSP 346 (459)
T ss_pred -CC----CHHHHHHHHHHHHHcC-CCEeEEEecCC
Confidence 11 1245667788877654 33456666653
No 36
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=55.63 E-value=1.4e+02 Score=28.64 Aligned_cols=82 Identities=9% Similarity=0.107 Sum_probs=45.3
Q ss_pred hHHHHHhh--CCCeEE--E--eecCCc-hhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecc-cccC----CCCH
Q 043818 64 EVLSALAT--SNLSVC--L--GVKNQD-LAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGN-EIIP----GTEA 131 (344)
Q Consensus 64 ~vl~A~~~--~gi~V~--l--Gv~~~~-~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGN-E~l~----~~~~ 131 (344)
..+.++++ .++||+ + |=|... ...+.++++....++++.+ .+.. ...+.+|-+=- |... ..+.
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~~-~~~~----~~~~DGidiD~we~p~~~~~~~d~ 129 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLLV-TTAK----KNHFDGIVLEVWSQLAAYGVPDKR 129 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHHH-HHHH----HcCCCcEEEechhhhcccCCHHHH
Confidence 34455554 579998 4 335432 3456667666555555433 3332 12334443321 1111 1235
Q ss_pred hHHHHHHHHHHHHHHhCCC
Q 043818 132 VYVLPAMKNIQQVLEQENV 150 (344)
Q Consensus 132 ~~L~~~i~~v~~aL~~~gl 150 (344)
..++..|+++|++|.+.|+
T Consensus 130 ~~~~~~l~el~~~l~~~~~ 148 (318)
T cd02876 130 KELIQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHHHHhhcCC
Confidence 6788999999999988775
No 37
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=55.26 E-value=38 Score=34.87 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhcCCCCEEEE-------cc------CCh-------hHHHHHhhCCCeEEEeecCCchhH
Q 043818 39 ARVVEFLTKDLNYAIPSVRI-------FD------PEP-------EVLSALATSNLSVCLGVKNQDLAQ 87 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRi-------Y~------~d~-------~vl~A~~~~gi~V~lGv~~~~~~~ 87 (344)
++++++|+. .|++..|+ +- .++ .++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~---lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAE---MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHH---cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 678888888 78776664 31 132 589999999999999997766553
No 38
>PLN03059 beta-galactosidase; Provisional
Probab=54.65 E-value=1.9e+02 Score=32.08 Aligned_cols=121 Identities=10% Similarity=0.030 Sum_probs=72.0
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccC------C------------hhHHHHHhhCCCeEEEee---------------cCC
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDP------E------------PEVLSALATSNLSVCLGV---------------KNQ 83 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~------d------------~~vl~A~~~~gi~V~lGv---------------~~~ 83 (344)
.++...+.|+.+++.|++.|-+|-. . ..-|+.+++.|+.|+|=. |.-
T Consensus 57 ~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~ 136 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLK 136 (840)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhh
Confidence 4555555555555599999999933 1 135788889999998732 211
Q ss_pred ---chhHhhcC---HHHHHHHHHHhcc-----cccCCCCCcceEEEEeecccccCCC--CHhHHHHHHHHHHHHHHhCCC
Q 043818 84 ---DLAQMAGS---MDYTRNWVREFVT-----PYTKGGNGTLKLRYITAGNEIIPGT--EAVYVLPAMKNIQQVLEQENV 150 (344)
Q Consensus 84 ---~~~~~~~~---~~~a~~wv~~~v~-----~~~~~~~~~~~I~~I~VGNE~l~~~--~~~~L~~~i~~v~~aL~~~gl 150 (344)
++.--..+ .++.++|+..-+. ++. -.+| -.|..+-|-||.=.-. ....=-.+|+.+++.+++.|+
T Consensus 137 ~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~-~~~G-GPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi 214 (840)
T PLN03059 137 YVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLF-EPQG-GPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGT 214 (840)
T ss_pred cCCCcccccCCHHHHHHHHHHHHHHHHHHhhccee-ecCC-CcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCC
Confidence 11000112 2455666555432 111 0132 4788999999963210 011236789999999999998
Q ss_pred CCeeEeeeec
Q 043818 151 PNVGVSTVLS 160 (344)
Q Consensus 151 ~~IkVsT~~~ 160 (344)
+ ||.-|.+.
T Consensus 215 ~-VPl~t~dg 223 (840)
T PLN03059 215 G-VPWVMCKQ 223 (840)
T ss_pred C-cceEECCC
Confidence 4 77777654
No 39
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=52.83 E-value=52 Score=32.07 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=43.6
Q ss_pred HHHHhh--CCCeEEEee--cCC---chhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCC-----CCHhH
Q 043818 66 LSALAT--SNLSVCLGV--KNQ---DLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPG-----TEAVY 133 (344)
Q Consensus 66 l~A~~~--~gi~V~lGv--~~~---~~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~-----~~~~~ 133 (344)
+.++++ .++||++.| |.. ....+..++...+..+++.| .+.. ...+.+|.+==|.... .+...
T Consensus 61 ~~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l~----~~~~DGidiDwE~p~~~~~~~~d~~~ 135 (362)
T cd02872 61 FNALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFLR----KYGFDGLDLDWEYPGQRGGPPEDKEN 135 (362)
T ss_pred HHHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHHH----HcCCCCeeeeeeccccCCCCHHHHHH
Confidence 344454 689999777 332 22345556555455544433 3322 1233444443333221 23567
Q ss_pred HHHHHHHHHHHHHhC
Q 043818 134 VLPAMKNIQQVLEQE 148 (344)
Q Consensus 134 L~~~i~~v~~aL~~~ 148 (344)
++..|+++|++|.+.
T Consensus 136 ~~~ll~~lr~~l~~~ 150 (362)
T cd02872 136 FVTLLKELREAFEPE 150 (362)
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999999999887
No 40
>PLN02998 beta-glucosidase
Probab=51.56 E-value=27 Score=36.24 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=42.6
Q ss_pred CCCceEEEeeeccCCCCCC--CCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCceeee
Q 043818 256 KEDVKVVVTETGWPSAGSN--LPHASVENAKTYNSNLKKHIQTLGGTPRRPNLNLETFIFALFNE-NQKPEGTEQNFGSF 332 (344)
Q Consensus 256 ~~~~~vvItETGWPs~G~~--~a~as~~na~~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~fDe-~wK~g~~E~~wGlf 332 (344)
+++.+|+|||-|+....++ ...-=++.-+.+++.+.+.+. .|-+. .-+|.-++.|- .|..| .++.|||+
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~DnfEW~~G-y~~RfGLv 461 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMDVFELFGG-YERSFGLL 461 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhcc-ccCccceE
Confidence 5555899999999865321 001222334444455444443 44321 23455578773 24444 89999999
Q ss_pred cCCCc
Q 043818 333 YPNLQ 337 (344)
Q Consensus 333 ~~n~~ 337 (344)
+.|..
T Consensus 462 ~VD~~ 466 (497)
T PLN02998 462 YVDFK 466 (497)
T ss_pred EECCC
Confidence 99754
No 41
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=51.47 E-value=59 Score=23.36 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=34.6
Q ss_pred CCHHHHHHHHhhhhcCCCCEEEEccCC-----hhHHHHHhhCCCeEEEeecC
Q 043818 36 PPPARVVEFLTKDLNYAIPSVRIFDPE-----PEVLSALATSNLSVCLGVKN 82 (344)
Q Consensus 36 ~~~~~v~~~lk~~~~~~~~~VRiY~~d-----~~vl~A~~~~gi~V~lGv~~ 82 (344)
-++++.++..+. +|++.|=+=+-+ ....+.+++.||+++.|+-.
T Consensus 15 ~~~~~~~~~a~~---~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKE---LGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHH---cCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 356888888888 899999887766 35567777899999999864
No 42
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=49.70 E-value=2.8e+02 Score=27.82 Aligned_cols=140 Identities=11% Similarity=0.176 Sum_probs=69.7
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccC-------C-------hhHHHHHhhCC-CeEEEeecCCchhHhhcCHHHHHHHHHH
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDP-------E-------PEVLSALATSN-LSVCLGVKNQDLAQMAGSMDYTRNWVRE 101 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~-------d-------~~vl~A~~~~g-i~V~lGv~~~~~~~~~~~~~~a~~wv~~ 101 (344)
++++|++.++.+...|++.|.+++. | .++++++.+.+ ++- +.+-.-....+ +.+..+ .+++
T Consensus 165 ~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~-~r~~~~~p~~~--~~ell~-~~~~ 240 (430)
T TIGR01125 165 PIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYW-IRMHYLYPDEL--TDDVID-LMAE 240 (430)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccE-EEEccCCcccC--CHHHHH-HHhh
Confidence 4588888777766678888887632 1 24677777655 422 21110000111 122111 1222
Q ss_pred hcccccCCCCCcceEEEEeeccccc----CC----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCC
Q 043818 102 FVTPYTKGGNGTLKLRYITAGNEII----PG----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSN 172 (344)
Q Consensus 102 ~v~~~~~~~~~~~~I~~I~VGNE~l----~~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~ 172 (344)
. + ....++.+|=|-. .+ + ...+...+++.+|+... .+.+++.. + -++|
T Consensus 241 ~-----~-----~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~-----~i~i~~~~----I-~G~P--- 297 (430)
T TIGR01125 241 G-----P-----KVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCP-----DAVLRTTF----I-VGFP--- 297 (430)
T ss_pred C-----C-----cccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCC-----CCeEeEEE----E-EECC---
Confidence 1 0 1123444443322 21 1 46677778887776531 24455442 2 1233
Q ss_pred cccchhhHHHHHHHHHHhhhcCCceeeeccCccccC
Q 043818 173 GSFATEVATTLNEISKFVYSKGAPLMINVYPYFTLA 208 (344)
Q Consensus 173 g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~~ 208 (344)
| +-...+.+.++|+.+.. +-.+++++|--.-
T Consensus 298 g----ET~e~~~~t~~fl~~~~-~~~~~~~~~sp~p 328 (430)
T TIGR01125 298 G----ETEEDFQELLDFVEEGQ-FDRLGAFTYSPEE 328 (430)
T ss_pred C----CCHHHHHHHHHHHHhcC-CCEEeeeeccCCC
Confidence 1 11356677888987654 4566777766553
No 43
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.24 E-value=8.5 Score=30.79 Aligned_cols=7 Identities=57% Similarity=0.657 Sum_probs=5.4
Q ss_pred ChhHHHH
Q 043818 1 MAIKVML 7 (344)
Q Consensus 1 ~~~~~~l 7 (344)
|++|.+|
T Consensus 1 MaSK~~l 7 (95)
T PF07172_consen 1 MASKAFL 7 (95)
T ss_pred CchhHHH
Confidence 8999744
No 44
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=48.82 E-value=2.1e+02 Score=26.81 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=43.0
Q ss_pred hHHHHHhh--CCCeEEEee--cCCchhHhhcCHHHHHHHHHHh---cccccCCCCCcceEEEEeecccccCCCCHhHHHH
Q 043818 64 EVLSALAT--SNLSVCLGV--KNQDLAQMAGSMDYTRNWVREF---VTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLP 136 (344)
Q Consensus 64 ~vl~A~~~--~gi~V~lGv--~~~~~~~~~~~~~~a~~wv~~~---v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~ 136 (344)
.-+.+++. .++||++.| |.........++...+.|+++. +..+.. ...+.+|-+-=|... .+......
T Consensus 59 ~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~----~~~fDGiDiDwE~~~-~d~~~f~~ 133 (253)
T cd06544 59 EAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQ----TYNLDGIDIDYEHFP-ADPDTFVE 133 (253)
T ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCCCccccCchhhhhHHHHHHHHHHHHHH----HhCCCceeeecccCC-cCHHHHHH
Confidence 34555554 679999888 4432111222233333443221 222222 123445544444321 24567888
Q ss_pred HHHHHHHHHHhCCC
Q 043818 137 AMKNIQQVLEQENV 150 (344)
Q Consensus 137 ~i~~v~~aL~~~gl 150 (344)
.|++++++|++.|+
T Consensus 134 ll~~l~~~l~~~~~ 147 (253)
T cd06544 134 CIGQLITELKNNGV 147 (253)
T ss_pred HHHHHHHHhhhcCC
Confidence 89999999988774
No 45
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=48.53 E-value=27 Score=30.70 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeec
Q 043818 41 VVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVK 81 (344)
Q Consensus 41 v~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~ 81 (344)
-.++|+. .|+++||+.+.+|.-+.++.+.||+|.=-|+
T Consensus 131 gaqIL~d---LGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRD---LGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHH---TT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHH---cCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 3567888 8999999999999999999999999975544
No 46
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=48.45 E-value=73 Score=30.53 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHhh--CCCeEEEeecC--C--chhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCC--CCHhHHHHH
Q 043818 66 LSALAT--SNLSVCLGVKN--Q--DLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPG--TEAVYVLPA 137 (344)
Q Consensus 66 l~A~~~--~gi~V~lGv~~--~--~~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~--~~~~~L~~~ 137 (344)
+.++++ .+++|++.|-. . ....+..+.+..+..+++ |..+.. ...+.+|-+==|.... .+...+...
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~-i~~~~~----~~~~DGidiDwE~~~~~~~d~~~~~~l 131 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDS-IVSFLK----KYGFDGIDIDWEYPGARGDDRENYTAL 131 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHH-HHHHHH----HcCCCeEEECCcCCCCCccHHHHHHHH
Confidence 455555 49999987754 2 233455555444444433 333332 2345566554444432 245678899
Q ss_pred HHHHHHHHHhC
Q 043818 138 MKNIQQVLEQE 148 (344)
Q Consensus 138 i~~v~~aL~~~ 148 (344)
|+++|+.|.+.
T Consensus 132 l~~lr~~l~~~ 142 (334)
T smart00636 132 LKELREALDKE 142 (334)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 47
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=47.25 E-value=3e+02 Score=27.39 Aligned_cols=140 Identities=9% Similarity=0.133 Sum_probs=70.1
Q ss_pred CCHHHHHHHHhhhhcCCCCEEEEcc-------CC-------hhHHHHHhhC-CC-eEEEeecCCchhHhhcCHHHHHHHH
Q 043818 36 PPPARVVEFLTKDLNYAIPSVRIFD-------PE-------PEVLSALATS-NL-SVCLGVKNQDLAQMAGSMDYTRNWV 99 (344)
Q Consensus 36 ~~~~~v~~~lk~~~~~~~~~VRiY~-------~d-------~~vl~A~~~~-gi-~V~lGv~~~~~~~~~~~~~~a~~wv 99 (344)
-++++|++.++.+...|++.|.+.+ .| .++++++.+. ++ .+.++--. ...+ +.+. .+.+
T Consensus 167 r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~--~~el-l~~m 241 (414)
T TIGR01579 167 VPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDI--DEEL-LEAI 241 (414)
T ss_pred CCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhC--CHHH-HHHH
Confidence 3468888877776668999998743 22 1466666543 44 24443211 1111 1221 1122
Q ss_pred HHhcccccCCCCCcceEEEEeecccccC----C----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCC
Q 043818 100 REFVTPYTKGGNGTLKLRYITAGNEIIP----G----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPP 170 (344)
Q Consensus 100 ~~~v~~~~~~~~~~~~I~~I~VGNE~l~----~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pp 170 (344)
+++ . .....|.+|=|-.. + + ...+...+++.+|+.. .| +.+++.. + -++|
T Consensus 242 ~~~--~--------~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g---i~i~~~~----I-vG~P- 300 (414)
T TIGR01579 242 ASE--K--------RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD---YAFGTDI----I-VGFP- 300 (414)
T ss_pred Hhc--C--------ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC---CeeeeeE----E-EECC-
Confidence 221 0 01234445533332 1 1 4667777777777643 22 4555542 1 1333
Q ss_pred CCcccchhhHHHHHHHHHHhhhcCCceeeeccCccccC
Q 043818 171 SNGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTLA 208 (344)
Q Consensus 171 s~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~~ 208 (344)
| +-...+...++|+.+.. +-.+++|||--.-
T Consensus 301 --g----ET~ed~~~tl~~i~~~~-~~~~~~~~~sp~p 331 (414)
T TIGR01579 301 --G----ESEEDFQETLRMVKEIE-FSHLHIFPYSARP 331 (414)
T ss_pred --C----CCHHHHHHHHHHHHhCC-CCEEEeeecCCCC
Confidence 1 11345667788887654 4566777765443
No 48
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=44.66 E-value=66 Score=29.09 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccchhhHHHH-HHHHHHhhhcCCceeeecc
Q 043818 134 VLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTL-NEISKFVYSKGAPLMINVY 202 (344)
Q Consensus 134 L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~l-~~~ldfL~~~~~~~~vNiy 202 (344)
.-.+++.+.+.+...|+..|++.+..... .|. .+.+ .++.+.+.+.+=|+.+|+-
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGGF------DPD--------DPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETTC------CTT--------SGHCHHHHHHHHHHHT-EEEEEES
T ss_pred chhHHHHHHHhccccceeeeEecCCCCcc------ccc--------cHHHHHHHHHHHHhhccceeeecc
Confidence 34678888888888998558877643211 111 1233 3888889999988877743
No 49
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=44.52 E-value=78 Score=32.03 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=59.3
Q ss_pred hhHHHHHhhCCCeEEEeecCCc--hhHh--------hcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCCCHh
Q 043818 63 PEVLSALATSNLSVCLGVKNQD--LAQM--------AGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAV 132 (344)
Q Consensus 63 ~~vl~A~~~~gi~V~lGv~~~~--~~~~--------~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~ 132 (344)
..+++..+..+++.++++-|.. .... -.++ .+..=+-+++..-.. ...+++|.+.=|.+..++..
T Consensus 150 ~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~ne-t~~~~~i~~ii~~l~----~~Gyrgv~iDfE~v~~~DR~ 224 (423)
T COG3858 150 ENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNE-TAKNRLINNIITLLD----ARGYRGVNIDFENVGPGDRE 224 (423)
T ss_pred cchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcH-HHHHHHHHHHHHHHH----hcCcccEEechhhCCHHHHH
Confidence 4688998899999999998875 2111 1121 221112222222222 24578899998998777777
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEeeeec
Q 043818 133 YVLPAMKNIQQVLEQENVPNVGVSTVLS 160 (344)
Q Consensus 133 ~L~~~i~~v~~aL~~~gl~~IkVsT~~~ 160 (344)
.+-.-|+.++.+|.+.|+ .++++..
T Consensus 225 ~yt~flR~~r~~l~~~G~---~~siAva 249 (423)
T COG3858 225 LYTDFLRQVRDALHSGGY---TVSIAVA 249 (423)
T ss_pred HHHHHHHHHHHHhccCCe---EEEEEec
Confidence 788889999999999985 4555543
No 50
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.95 E-value=3.6e+02 Score=27.27 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=32.0
Q ss_pred CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccchhhHHHHHHHHHHhhhcCCceeeeccCcc
Q 043818 130 EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVYPYF 205 (344)
Q Consensus 130 ~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf 205 (344)
..++++.+++.+|++. . ++.++|.. + -++| |. -...+.+.++|+.+.+ +-.+++|+|-
T Consensus 270 ~~~~~~~~v~~lr~~~----~-~i~i~~d~----I-vG~P---gE----t~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 270 RREKYLERIAEIREAL----P-DVVLSTDI----I-VGFP---GE----TEEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred CHHHHHHHHHHHHHhC----C-CcEEEEeE----E-EECC---CC----CHHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 4667788888877653 2 34455542 2 1333 11 1245566778876643 4456666654
No 51
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=43.40 E-value=2.9e+02 Score=26.24 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=38.8
Q ss_pred hHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCCCHhHHHHHHHHHHHHHHhCCC
Q 043818 86 AQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQQVLEQENV 150 (344)
Q Consensus 86 ~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~~i~~v~~aL~~~gl 150 (344)
..+.+++.....++++.+ .+.. ...+.+|.+-=|.+...+...+...|++++++|.+.|+
T Consensus 80 ~~~l~~~~~R~~fi~~iv-~~~~----~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~ 139 (298)
T cd06549 80 ARLLADPSARAKFIANIA-AYLE----RNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGK 139 (298)
T ss_pred HHHhcCHHHHHHHHHHHH-HHHH----HhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCc
Confidence 345566665555555544 3332 23456666666665444567789999999999988775
No 52
>PLN00196 alpha-amylase; Provisional
Probab=42.55 E-value=93 Score=31.61 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=36.0
Q ss_pred eeeEEecCCCCCCCCHHHHHHHHhhhhcCCCCEE-----------------EEccCC-h---------hHHHHHhhCCCe
Q 043818 23 TVGINYGRLGNNLPPPARVVEFLTKDLNYAIPSV-----------------RIFDPE-P---------EVLSALATSNLS 75 (344)
Q Consensus 23 ~~Gv~Yg~~~~~~~~~~~v~~~lk~~~~~~~~~V-----------------RiY~~d-~---------~vl~A~~~~gi~ 75 (344)
..|+.+-....++-.-..+.+.|.-+++.||+.| +.|+.+ + ++++++.+.||+
T Consensus 28 ~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 28 FQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred EEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE
Confidence 4688875533332222334443333333788877 445554 2 478888999999
Q ss_pred EEEee-cCC
Q 043818 76 VCLGV-KNQ 83 (344)
Q Consensus 76 V~lGv-~~~ 83 (344)
|++-+ .|.
T Consensus 108 VilDvV~NH 116 (428)
T PLN00196 108 VIADIVINH 116 (428)
T ss_pred EEEEECccC
Confidence 99875 443
No 53
>PLN02849 beta-glucosidase
Probab=42.27 E-value=46 Score=34.58 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHHHHhhhhcCCCCEEEE-------cc-----CCh-------hHHHHHhhCCCeEEEeecCCchh
Q 043818 39 ARVVEFLTKDLNYAIPSVRI-------FD-----PEP-------EVLSALATSNLSVCLGVKNQDLA 86 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRi-------Y~-----~d~-------~vl~A~~~~gi~V~lGv~~~~~~ 86 (344)
++++++|++ .|++.-|. +- .|+ +++.++.+.||+-+|.+.=-+++
T Consensus 82 ~eDI~Lm~~---lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 82 KEDVKLMVE---TGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHH---cCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 678888888 78777664 31 132 68999999999999999765554
No 54
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.25 E-value=64 Score=29.56 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=41.9
Q ss_pred EEEEccCC-----hhHHHHHhhCCCeEEEeecCCchhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeeccccc
Q 043818 55 SVRIFDPE-----PEVLSALATSNLSVCLGVKNQDLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEII 126 (344)
Q Consensus 55 ~VRiY~~d-----~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l 126 (344)
.+++|++- +.+..+....-+.++|..-..+..+. +....|++ +|..+.+ ..+..+.|||-.=
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W~~-~I~e~a~-----~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNWIK-NIDEHAS-----DDVVKILVGNKCD 128 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHHHH-HHHhhCC-----CCCcEEEeecccc
Confidence 67788775 36777776666677777666554554 34455765 5777764 5888999999763
No 55
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=41.10 E-value=1.5e+02 Score=28.31 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccchhhHHHHHHHHHHhhhcCCceeeeccC
Q 043818 135 LPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVYP 203 (344)
Q Consensus 135 ~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyP 203 (344)
-.+..+++...++.|+..+++.... . .+.|+ .+.+.++.++..+.+-|+.+|.=+
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~-----~-~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVA-----Q-GFYPD--------DPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccc-----c-CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCC
Confidence 3467778888888887556664331 1 11121 245788999999999999996544
No 56
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=40.98 E-value=47 Score=29.80 Aligned_cols=33 Identities=15% Similarity=0.461 Sum_probs=29.3
Q ss_pred HHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEE
Q 043818 42 VEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVC 77 (344)
Q Consensus 42 ~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~ 77 (344)
.++|+. .|+++||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~d---LGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILED---LGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 567888 899999999998877889999999987
No 57
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.89 E-value=3.6e+02 Score=27.25 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=68.6
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccCC--------------hhHHHHHhh-CCC-eEEEeecCCchhHhhcCHHHHHHHHH
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDPE--------------PEVLSALAT-SNL-SVCLGVKNQDLAQMAGSMDYTRNWVR 100 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~d--------------~~vl~A~~~-~gi-~V~lGv~~~~~~~~~~~~~~a~~wv~ 100 (344)
++++|++.++.+...|++.|.+.+.+ ...|..+.. .++ .+-++.-. ...+ +.+. .+.++
T Consensus 177 ~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--P~~i--~~el-l~~l~ 251 (439)
T PRK14328 177 KPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSH--PKDL--SDDL-IEAIA 251 (439)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCC--hhhc--CHHH-HHHHH
Confidence 45788877776666788888886543 145555554 343 23222111 1111 1121 11122
Q ss_pred HhcccccCCCCCcceEEEEeec----ccccCC----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCC
Q 043818 101 EFVTPYTKGGNGTLKLRYITAG----NEIIPG----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPS 171 (344)
Q Consensus 101 ~~v~~~~~~~~~~~~I~~I~VG----NE~l~~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps 171 (344)
+ . + .....+.+| ++.+.+ . +..+...+++.+|+.+ .++.++|.. + -++|
T Consensus 252 ~----~-~-----~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~~i~i~~d~----I-vG~P-- 309 (439)
T PRK14328 252 D----C-D-----KVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNI-----PDVAITTDI----I-VGFP-- 309 (439)
T ss_pred h----C-C-----CcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhC-----CCCEEEEEE----E-EECC--
Confidence 2 1 0 123456666 333322 2 5777888888877763 235555532 2 1343
Q ss_pred CcccchhhHHHHHHHHHHhhhcCCceeeeccCcccc
Q 043818 172 NGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTL 207 (344)
Q Consensus 172 ~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~ 207 (344)
|. -...+...++|+.+.+ +-.+++++|--.
T Consensus 310 -gE----T~ed~~~tl~~i~~l~-~~~~~~~~~sp~ 339 (439)
T PRK14328 310 -GE----TEEDFEETLDLVKEVR-YDSAFTFIYSKR 339 (439)
T ss_pred -CC----CHHHHHHHHHHHHhcC-CCcccceEecCC
Confidence 11 1245666778876653 445676665433
No 58
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=40.76 E-value=83 Score=28.96 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCCCceEEEeeeccCCCCCC----CCCCCHHHHHHHHHHHHHhhh
Q 043818 255 GKEDVKVVVTETGWPSAGSN----LPHASVENAKTYNSNLKKHIQ 295 (344)
Q Consensus 255 g~~~~~vvItETGWPs~G~~----~a~as~~na~~y~~~~i~~~~ 295 (344)
++++.+|+.+ |||.|.. ....+...+...+..++..+.
T Consensus 46 ~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 46 GFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred CCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6677666666 9999972 223444455556666666655
No 59
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=40.55 E-value=74 Score=24.45 Aligned_cols=45 Identities=11% Similarity=-0.103 Sum_probs=31.5
Q ss_pred cceEEEEeeccc-ccCC--------C--CHhHHHHHHHHHHHHHHhCCCCCeeEeee
Q 043818 113 TLKLRYITAGNE-IIPG--------T--EAVYVLPAMKNIQQVLEQENVPNVGVSTV 158 (344)
Q Consensus 113 ~~~I~~I~VGNE-~l~~--------~--~~~~L~~~i~~v~~aL~~~gl~~IkVsT~ 158 (344)
...|.+-=|+|| .... . ....+.+.|+++-+.+++.+- ..|||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP-~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP-SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T-TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC-CCcEEee
Confidence 578999999999 5511 1 257789999999999998874 5677765
No 60
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=40.53 E-value=48 Score=29.92 Aligned_cols=33 Identities=18% Similarity=0.490 Sum_probs=29.5
Q ss_pred HHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEE
Q 043818 42 VEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVC 77 (344)
Q Consensus 42 ~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~ 77 (344)
.++|+. .|+++||+.+..+.-+.++.+.||+|.
T Consensus 134 AQIL~d---LGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKA---LGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 568888 899999999998877889999999997
No 61
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=38.84 E-value=3.5e+02 Score=25.64 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHhhhhcCCCCEEEEccCC-------hhHHHHH---hhCCCeEEEeecCCchhHhhcCHHHHHHHHHHhc
Q 043818 34 NLPPPARVVEFLTKDLNYAIPSVRIFDPE-------PEVLSAL---ATSNLSVCLGVKNQDLAQMAGSMDYTRNWVREFV 103 (344)
Q Consensus 34 ~~~~~~~v~~~lk~~~~~~~~~VRiY~~d-------~~vl~A~---~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v 103 (344)
+.+++.+..+.|+. .|++.|-+-... ..+.+.+ +..--++.+|-|.=.......+.+..+. +.+.+
T Consensus 56 ~i~~~~eaL~~L~~---~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~-va~aL 131 (262)
T PF06180_consen 56 KIDSPEEALAKLAD---EGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEA-VAEAL 131 (262)
T ss_dssp ----HHHHHHHHHH---CT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHH-HHHHH
T ss_pred CcCCHHHHHHHHHH---CCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHH-HHHHH
Confidence 46888999999998 999999998775 1344443 3334589999886221000011221111 33333
Q ss_pred ccccCCCCCcceEEEEeecccccCCCCHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccchhhHHHH
Q 043818 104 TPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEVATTL 183 (344)
Q Consensus 104 ~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~~~~~~~l 183 (344)
..-++.......+..+-=||+-. + -..-..++..|++.|++++=|+|.+. +| .+
T Consensus 132 ~~~~~~~~~~~a~vlmGHGt~h~-----a--n~~Y~~l~~~l~~~~~~~v~vgtvEG-------~P------------~~ 185 (262)
T PF06180_consen 132 AEEFPKKRKDEAVVLMGHGTPHP-----A--NAAYSALQAMLKKHGYPNVFVGTVEG-------YP------------SL 185 (262)
T ss_dssp HCCS-TT-TTEEEEEEE---SCH-----H--HHHHHHHHHHHHCCT-TTEEEEETTS-------SS------------BH
T ss_pred HHhccccCCCCEEEEEeCCCCCC-----c--cHHHHHHHHHHHhCCCCeEEEEEeCC-------CC------------CH
Confidence 33222111124444444455432 1 22345667888888887799999863 33 23
Q ss_pred HHHHHHhhhcCCceeeeccCccccCC
Q 043818 184 NEISKFVYSKGAPLMINVYPYFTLAS 209 (344)
Q Consensus 184 ~~~ldfL~~~~~~~~vNiyPyf~~~~ 209 (344)
.++++.|.+.+ +=-|.+.||.--..
T Consensus 186 ~~vi~~L~~~g-~k~V~L~PlMlVAG 210 (262)
T PF06180_consen 186 EDVIARLKKKG-IKKVHLIPLMLVAG 210 (262)
T ss_dssp HHHHHHHHHHT--SEEEEEEESSS--
T ss_pred HHHHHHHHhcC-CCeEEEEecccccc
Confidence 44555555533 33588999886543
No 62
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=38.81 E-value=15 Score=26.90 Aligned_cols=9 Identities=44% Similarity=0.719 Sum_probs=7.6
Q ss_pred ChhHHHHHH
Q 043818 1 MAIKVMLLA 9 (344)
Q Consensus 1 ~~~~~~l~~ 9 (344)
||.|+++++
T Consensus 1 MA~Kl~via 9 (65)
T PF10731_consen 1 MASKLIVIA 9 (65)
T ss_pred CcchhhHHH
Confidence 999998766
No 63
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=38.39 E-value=58 Score=33.44 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhcCCCCEEEE-------cc-----CCh-------hHHHHHhhCCCeEEEeecCCchhH
Q 043818 39 ARVVEFLTKDLNYAIPSVRI-------FD-----PEP-------EVLSALATSNLSVCLGVKNQDLAQ 87 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRi-------Y~-----~d~-------~vl~A~~~~gi~V~lGv~~~~~~~ 87 (344)
++++++|+. .|++.-|+ +- .++ +++.+|.+.||+-+|.+.--+++.
T Consensus 56 ~eDi~L~~~---lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEE---YGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHH---cCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 788888988 78776654 31 122 589999999999999998766543
No 64
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=35.99 E-value=4.3e+02 Score=25.91 Aligned_cols=136 Identities=15% Similarity=0.238 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHhhhhcCCCCEEEEccCCh-------hHHHHHhhCCC-eEEEeecCCchhHhhcCHHHHHHHHHHhccc
Q 043818 34 NLPPPARVVEFLTKDLNYAIPSVRIFDPEP-------EVLSALATSNL-SVCLGVKNQDLAQMAGSMDYTRNWVREFVTP 105 (344)
Q Consensus 34 ~~~~~~~v~~~lk~~~~~~~~~VRiY~~d~-------~vl~A~~~~gi-~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~ 105 (344)
++.+++++..+++.....|+++|||=+-.| .++..+++.++ .|.++-.-..+. ..|.+|-..
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~------~~a~~Lk~A---- 110 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLA------RRAADLKEA---- 110 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHH------HHHHHHHHc----
Confidence 456788888777765558899999998775 46777776655 455553322222 222222111
Q ss_pred ccCCCCCcceEEEEeecccccCC----C--CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccchhh
Q 043818 106 YTKGGNGTLKLRYITAGNEIIPG----T--EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFATEV 179 (344)
Q Consensus 106 ~~~~~~~~~~I~~I~VGNE~l~~----~--~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~~~~ 179 (344)
. .+.|-|-=+.+.. . -...+-..|+-|.+++ ++|+..|||.|+.--+ ++
T Consensus 111 G---------l~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~-~~Gl~pVKlN~Vv~kg------------vN--- 165 (322)
T COG2896 111 G---------LDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAV-EAGLTPVKLNTVLMKG------------VN--- 165 (322)
T ss_pred C---------CcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCceEEEEEEecC------------CC---
Confidence 1 1122222222211 1 1122455566666664 6899779999984211 12
Q ss_pred HHHHHHHHHHhhhcCCceeeeccCccccCC
Q 043818 180 ATTLNEISKFVYSKGAPLMINVYPYFTLAS 209 (344)
Q Consensus 180 ~~~l~~~ldfL~~~~~~~~vNiyPyf~~~~ 209 (344)
...+-++++|....+- .++|-++..
T Consensus 166 d~ei~~l~e~~~~~~~-----~lrfIE~m~ 190 (322)
T COG2896 166 DDEIEDLLEFAKERGA-----QLRFIELMP 190 (322)
T ss_pred HHHHHHHHHHHhhcCC-----ceEEEEEee
Confidence 2467788888766543 345555543
No 65
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=35.66 E-value=4.2e+02 Score=25.65 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=62.3
Q ss_pred HHHHHHHhhhhcCCCCEEEEccC-----------C-------hhHHHHHhhCCCeEEE--eecCCc------hhHh----
Q 043818 39 ARVVEFLTKDLNYAIPSVRIFDP-----------E-------PEVLSALATSNLSVCL--GVKNQD------LAQM---- 88 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY~~-----------d-------~~vl~A~~~~gi~V~l--Gv~~~~------~~~~---- 88 (344)
.++++.+|+ .|++.|-+|-. | ...|+.|++.|+.|+| |-|... ++..
T Consensus 27 ~~~l~k~ka---~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 27 RDRLQKMKA---AGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp HHHHHHHHH---TT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHh---CCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 444555555 99999999943 1 1368889999999885 333321 1110
Q ss_pred ------hcC---HHHHHHHHHH---hcccccCCCCCcceEEEEeecccccCCCCHhHHHHHHHHHHHHHHhCCCCCeeEe
Q 043818 89 ------AGS---MDYTRNWVRE---FVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQQVLEQENVPNVGVS 156 (344)
Q Consensus 89 ------~~~---~~~a~~wv~~---~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~~i~~v~~aL~~~gl~~IkVs 156 (344)
..+ .++.+.|++. .|+++.- .+| -.|..+-|-||.-.. ..-..+|+.++++.++.|...+...
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G-GpII~vQvENEyg~~---~~~~~Y~~~l~~~~~~~g~~~~~~~ 178 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQY-TNG-GPIIMVQVENEYGSY---GTDRAYMEALKDAYRDWGIDPVLLY 178 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBG-GGT-SSEEEEEESSSGGCT---SS-HHHHHHHHHHHHHTT-SSSBEE
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhh-cCC-CceehhhhhhhhCCC---cccHhHHHHHHHHHHHhhCccceee
Confidence 011 2455666543 3455432 122 478999999998632 3346788899999999987433333
Q ss_pred e
Q 043818 157 T 157 (344)
Q Consensus 157 T 157 (344)
|
T Consensus 179 t 179 (319)
T PF01301_consen 179 T 179 (319)
T ss_dssp E
T ss_pred c
Confidence 3
No 66
>PHA02754 hypothetical protein; Provisional
Probab=34.38 E-value=40 Score=24.51 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhCCC--CCeeEeee
Q 043818 133 YVLPAMKNIQQVLEQENV--PNVGVSTV 158 (344)
Q Consensus 133 ~L~~~i~~v~~aL~~~gl--~~IkVsT~ 158 (344)
..-.+|+++|..|.++|+ .+|++-|.
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEe
Confidence 456789999999999997 77887654
No 67
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=31.27 E-value=1.9e+02 Score=28.41 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHhccc----cccccCCeeeEEecCCCC---------------------CCCCH----HHHHHHHhhhhcC
Q 043818 1 MAIKVMLLAMALSHD----SMAFGAGTVGINYGRLGN---------------------NLPPP----ARVVEFLTKDLNY 51 (344)
Q Consensus 1 ~~~~~~l~~~~~~~~----~~~~~~~~~Gv~Yg~~~~---------------------~~~~~----~~v~~~lk~~~~~ 51 (344)
|.++..||+++.++. +.++..+.+||+.....+ ++.+. +.....+.++.++
T Consensus 1 mk~~~~lla~va~~~a~~~aa~~~d~~IGis~~d~~~eRW~~D~~~~~~~~e~~g~k~~~q~A~~~~~~Q~~qien~i~q 80 (341)
T COG4213 1 MKSKSTLLALVASLAATAAAAAAKDGVIGISMPDLRSERWIKDRDAFVKKAEALGAKVDVQSADGDEEKQLAQIENMINQ 80 (341)
T ss_pred CcHHHHHHHHHHHhhhhhhhhhccCCeEEEEcCChhHhhhhhhhHHHHHHHHhccchhhhhhhccChhHHHHHHHHHHhc
Confidence 556666666554422 233446789999877542 11111 1112233333346
Q ss_pred CCCEEEEccCCh----hHHHHHhhCCCeEEE
Q 043818 52 AIPSVRIFDPEP----EVLSALATSNLSVCL 78 (344)
Q Consensus 52 ~~~~VRiY~~d~----~vl~A~~~~gi~V~l 78 (344)
|.+.+=|=..|. ++++-+...||+|+.
T Consensus 81 g~~vlvi~a~d~~~l~~~i~~A~~~gikVia 111 (341)
T COG4213 81 GVKVLVIGAIDGGVLSNAVEKAKSEGIKVIA 111 (341)
T ss_pred CCCEEEEEeccchhHHHHHHHHHHcCCeEEE
Confidence 777776665553 456666677887753
No 68
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.57 E-value=3.7e+02 Score=26.84 Aligned_cols=131 Identities=15% Similarity=0.280 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCCcccc--hhhHHHHHHHHHHhhhcCCceeeeccCccccC
Q 043818 131 AVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSNGSFA--TEVATTLNEISKFVYSKGAPLMINVYPYFTLA 208 (344)
Q Consensus 131 ~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~g~f~--~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~~ 208 (344)
..++...++..|+ . +||+..-..-.-+...+ +.|. ++.-+.+.++++.|.+.+=-++++++|+....
T Consensus 42 ~~~v~~~i~~~~~----~---~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 42 QDEVREVIDRYRS----N---GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp HHHHHHHHHHHHH----T---T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred HHHHHHHHHHHHH----c---CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 4556565655554 3 37887765333333322 2332 22236778899999999999999999987765
Q ss_pred CCCCccCcccccccCCCccccCCCccchhhhHHHHHHHHHHHHHhcCC----CCceEEEeeeccCCCCCCCCCCCHHHHH
Q 043818 209 SDPQQVTLDYASFRSTTPVAQDGDRNYFNLFDSIVDSFIAAMVKAVGK----EDVKVVVTETGWPSAGSNLPHASVENAK 284 (344)
Q Consensus 209 ~~~~~~~~~~a~f~~~~~v~~~~~~~y~n~fd~~~d~~~~a~~k~~g~----~~~~vvItETGWPs~G~~~a~as~~na~ 284 (344)
.. .|. .++.. .++ |+ ++-...+++. ||-.+.-- .-|-..++
T Consensus 111 ~~------~~~------------------~~~~~-------~~~--~~~v~~~~g~~~~~~~-w~g~~~~~-Dftnp~a~ 155 (441)
T PF01055_consen 111 SP------DYE------------------NYDEA-------KEK--GYLVKNPDGSPYIGRV-WPGKGGFI-DFTNPEAR 155 (441)
T ss_dssp TT------B-H------------------HHHHH-------HHT--T-BEBCTTSSB-EEEE-TTEEEEEB--TTSHHHH
T ss_pred CC------cch------------------hhhhH-------hhc--CceeecccCCcccccc-cCCccccc-CCCChhHH
Confidence 32 111 22211 111 21 2235677777 88443310 24445588
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCcccEEEEEe
Q 043818 285 TYNSNLKKHIQTLGGTPRRPNLNLETFIFAL 315 (344)
Q Consensus 285 ~y~~~~i~~~~~~~Gtp~~p~~~~~~~~F~~ 315 (344)
.+++..++.+... .+++.+|..+
T Consensus 156 ~w~~~~~~~~~~~--------~Gvdg~w~D~ 178 (441)
T PF01055_consen 156 DWWKEQLKELLDD--------YGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHHTT--------ST-SEEEEES
T ss_pred HHHHHHHHHHHhc--------cCCceEEeec
Confidence 8887777776531 1588888865
No 69
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=29.92 E-value=88 Score=28.01 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=30.2
Q ss_pred HHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEee
Q 043818 42 VEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGV 80 (344)
Q Consensus 42 ~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv 80 (344)
.++|+. .|++++|+.+..+.-+.++.+.||+|.==+
T Consensus 133 AQIL~d---LGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRD---LGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHH---cCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 567888 899999999998877889999999998333
No 70
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=29.46 E-value=40 Score=33.60 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=35.6
Q ss_pred HHHHHHHhhhhcCCCCEE---EEc--cCCh-hHHHHHhh-CCCeEEEeecCCchhHhhcCHHHHHHHHHHhcccc
Q 043818 39 ARVVEFLTKDLNYAIPSV---RIF--DPEP-EVLSALAT-SNLSVCLGVKNQDLAQMAGSMDYTRNWVREFVTPY 106 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~V---RiY--~~d~-~vl~A~~~-~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~ 106 (344)
+.+.+.+.-.+..||++| |-| +..+ -+-+|+++ ...+|.|+--... ..+ .+...-++.+.+++...
T Consensus 34 ~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~-~~~-~~~edm~r~fneqLekl 106 (391)
T COG1453 34 ENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPS-WPV-KDREDMERIFNEQLEKL 106 (391)
T ss_pred HHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCC-ccc-cCHHHHHHHHHHHHHHh
Confidence 455556655555787655 557 3333 46678774 6778888765431 011 23333444455555443
No 71
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=29.44 E-value=3.7e+02 Score=29.79 Aligned_cols=115 Identities=16% Similarity=0.010 Sum_probs=63.6
Q ss_pred eeEEecCCCCCC---CCHHHHHHHHhhhhcCCCCEEEEccC--ChhHHHHHhhCCCeEEEeecCCc--hhHhhcCHHHHH
Q 043818 24 VGINYGRLGNNL---PPPARVVEFLTKDLNYAIPSVRIFDP--EPEVLSALATSNLSVCLGVKNQD--LAQMAGSMDYTR 96 (344)
Q Consensus 24 ~Gv~Yg~~~~~~---~~~~~v~~~lk~~~~~~~~~VRiY~~--d~~vl~A~~~~gi~V~lGv~~~~--~~~~~~~~~~a~ 96 (344)
.|+|.-+...-+ ...+.++++|+.++..|++.||+..- ++.-++-|...||-|+-=..... ...-..-.+.+.
T Consensus 303 kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~ 382 (808)
T COG3250 303 RGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVS 382 (808)
T ss_pred eeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHH
Confidence 477765543322 12233566666655599999999843 35678888889998875443221 110001123333
Q ss_pred HHHHHhcccccCCCCCcceEEEEeecccccCCCCHhHHHHHHHHHH
Q 043818 97 NWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQ 142 (344)
Q Consensus 97 ~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~~i~~v~ 142 (344)
+-+++.|...-. .-.|..=++|||.-.......+...++.+.
T Consensus 383 ~~i~~mver~kn----HPSIiiWs~gNE~~~g~~~~~~~~~~k~~d 424 (808)
T COG3250 383 EEVRRMVERDRN----HPSIIIWSLGNESGHGSNHWALYRWFKASD 424 (808)
T ss_pred HHHHHHHHhccC----CCcEEEEeccccccCccccHHHHHHHhhcC
Confidence 345666644311 235778899999765433344444444443
No 72
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.37 E-value=6.7e+02 Score=26.11 Aligned_cols=138 Identities=10% Similarity=0.175 Sum_probs=69.1
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccCC---------------hhHHHHHhhCCCe-EEEeecCCchhHhhcCHHHHHHHHH
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDPE---------------PEVLSALATSNLS-VCLGVKNQDLAQMAGSMDYTRNWVR 100 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~d---------------~~vl~A~~~~gi~-V~lGv~~~~~~~~~~~~~~a~~wv~ 100 (344)
++++|++.++.+...|++.|.+.+.+ ..+|+++.+.++. +-++.... ..+. .+ +-
T Consensus 242 ~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P--~~i~--de-----li 312 (509)
T PRK14327 242 RPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHP--RDFD--DH-----LI 312 (509)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCc--ccCC--HH-----HH
Confidence 45788877776666788888886532 1356666655542 32222111 1111 11 11
Q ss_pred HhcccccCCCCCcceEEEEeecccc----cCC----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCC
Q 043818 101 EFVTPYTKGGNGTLKLRYITAGNEI----IPG----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPS 171 (344)
Q Consensus 101 ~~v~~~~~~~~~~~~I~~I~VGNE~----l~~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps 171 (344)
+.+... ...+..+.+|=|- +.+ . +..+.+.+++.+|+++ ..+.++|.. + -+||
T Consensus 313 ~~m~~~------g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~-----p~i~i~tdi----I-vGfP-- 374 (509)
T PRK14327 313 EVLAKG------GNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI-----PNVALTTDI----I-VGFP-- 374 (509)
T ss_pred HHHHhc------CCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----CCcEEeeeE----E-EeCC--
Confidence 222221 1123455555333 322 2 5777888888888764 246666542 2 2344
Q ss_pred CcccchhhHHHHHHHHHHhhhcCCceeeeccCcccc
Q 043818 172 NGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTL 207 (344)
Q Consensus 172 ~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~ 207 (344)
|. -...+.+.++|+.+.+ +-.+++|+|--.
T Consensus 375 -gE----T~edf~~Tl~~v~~l~-~d~~~~f~yspr 404 (509)
T PRK14327 375 -NE----TDEQFEETLSLYREVG-FDHAYTFIYSPR 404 (509)
T ss_pred -CC----CHHHHHHHHHHHHHcC-CCeEEEeeeeCC
Confidence 11 1244566677776643 234566655443
No 73
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.94 E-value=1.3e+02 Score=25.26 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhcCCCCEEEEccCC-----------------------hhHHHHHhhCCCeEEEeecCC
Q 043818 38 PARVVEFLTKDLNYAIPSVRIFDPE-----------------------PEVLSALATSNLSVCLGVKNQ 83 (344)
Q Consensus 38 ~~~v~~~lk~~~~~~~~~VRiY~~d-----------------------~~vl~A~~~~gi~V~lGv~~~ 83 (344)
++++++.||. .+++.|-+|.-. .++++|+++.||+|++=+-..
T Consensus 2 ~~~~~~~lk~---~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKE---AHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHH---hCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 5677888888 678888776421 257899999999998776543
No 74
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.10 E-value=6.9e+02 Score=25.84 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=18.8
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccC
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDP 61 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~ 61 (344)
++++|++.++.+..+|++.|.+.|.
T Consensus 187 ~~e~Vv~Ei~~l~~~g~~ei~l~d~ 211 (502)
T PRK14326 187 RPGDILAEVQALVDEGVLEVTLLGQ 211 (502)
T ss_pred CHHHHHHHHHHHHHCCCceEEEEee
Confidence 4588888888776688888877543
No 75
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=27.99 E-value=6.2e+02 Score=25.29 Aligned_cols=138 Identities=13% Similarity=0.251 Sum_probs=70.4
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccCC--------------hhHHHHHhhC-CCe-EEEeecCCchhHhhcCHHHHHHHHH
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDPE--------------PEVLSALATS-NLS-VCLGVKNQDLAQMAGSMDYTRNWVR 100 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~d--------------~~vl~A~~~~-gi~-V~lGv~~~~~~~~~~~~~~a~~wv~ 100 (344)
++++|++.++.+...|++.|.+.+.| .++|+++.+. |++ +.++--. ...+ +.+ +-
T Consensus 169 ~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~--p~~i--~~e-----ll 239 (429)
T TIGR00089 169 PPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSH--PDDV--TDD-----LI 239 (429)
T ss_pred CHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCC--hhhc--CHH-----HH
Confidence 46888888877666789998887532 2466777654 442 3333211 1111 112 11
Q ss_pred HhcccccCCCCCcceEEEEeecccccC----C----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCC
Q 043818 101 EFVTPYTKGGNGTLKLRYITAGNEIIP----G----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPS 171 (344)
Q Consensus 101 ~~v~~~~~~~~~~~~I~~I~VGNE~l~----~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps 171 (344)
+.+... + ..+..|.+|=|-.. + . +..+...+++.+|+.. .++.+++.. + -++|
T Consensus 240 ~~m~~~-~-----~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~-----~~i~i~~~~----I-vG~P-- 301 (429)
T TIGR00089 240 ELIAEN-P-----KVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKI-----PDAAITTDI----I-VGFP-- 301 (429)
T ss_pred HHHHhC-C-----CccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHC-----CCCEEEeeE----E-EECC--
Confidence 222221 1 12345555544332 1 1 4666777777776642 134455442 1 1233
Q ss_pred CcccchhhHHHHHHHHHHhhhcCCceeeeccCcccc
Q 043818 172 NGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTL 207 (344)
Q Consensus 172 ~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~ 207 (344)
| +-...+.+.++|+.+.. +-.+++|+|--.
T Consensus 302 -g----ET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 331 (429)
T TIGR00089 302 -G----ETEEDFEETLDLVEEVK-FDKLHSFIYSPR 331 (429)
T ss_pred -C----CCHHHHHHHHHHHHhcC-CCEeeccccCCC
Confidence 1 11245667788887654 445677766544
No 76
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=27.74 E-value=77 Score=31.61 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.8
Q ss_pred HHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEE
Q 043818 42 VEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCL 78 (344)
Q Consensus 42 ~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~l 78 (344)
.++|+. .|+++||+. .+|.=+.++.+.||+|.=
T Consensus 331 AqILr~---LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQD---LGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHH---cCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 578888 899999999 678888889999999973
No 77
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=27.50 E-value=5.5e+02 Score=24.53 Aligned_cols=76 Identities=11% Similarity=0.078 Sum_probs=39.7
Q ss_pred HHHHhhCCCeEEEeecCCchhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCC-----CHhHHHHHHHH
Q 043818 66 LSALATSNLSVCLGVKNQDLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGT-----EAVYVLPAMKN 140 (344)
Q Consensus 66 l~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~-----~~~~L~~~i~~ 140 (344)
++.++..|+||++.+--........+...++. +.+++..+.. ...+.+|-+==|.-... +...++..+++
T Consensus 66 i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~-fa~sl~~~~~----~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~ 140 (312)
T cd02871 66 IKALQAKGKKVLISIGGANGHVDLNHTAQEDN-FVDSIVAIIK----EYGFDGLDIDLESGSNPLNATPVITNLISALKQ 140 (312)
T ss_pred HHHHHHCCCEEEEEEeCCCCccccCCHHHHHH-HHHHHHHHHH----HhCCCeEEEecccCCccCCcHHHHHHHHHHHHH
Confidence 55677789999988843221111223332222 3344433332 22344554444432211 24678888898
Q ss_pred HHHHHH
Q 043818 141 IQQVLE 146 (344)
Q Consensus 141 v~~aL~ 146 (344)
+|+.+.
T Consensus 141 lr~~~~ 146 (312)
T cd02871 141 LKDHYG 146 (312)
T ss_pred HHHHcC
Confidence 888774
No 78
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=27.34 E-value=80 Score=31.48 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.4
Q ss_pred HHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeec
Q 043818 42 VEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVK 81 (344)
Q Consensus 42 ~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~ 81 (344)
.++|+. .|+++||+.+ +|.=..++.+.||+|.==++
T Consensus 328 aqIL~~---Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRD---LGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHH---cCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 578888 8999999999 88888889999999974443
No 79
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.67 E-value=6.9e+02 Score=25.36 Aligned_cols=138 Identities=11% Similarity=0.100 Sum_probs=72.9
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccCC-------------hhHHHHHhh--CCCeEEEeecCCchhHhhcCHHHHHHHHHH
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDPE-------------PEVLSALAT--SNLSVCLGVKNQDLAQMAGSMDYTRNWVRE 101 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~d-------------~~vl~A~~~--~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~ 101 (344)
++++|++.++.+...|++.|.+.+.| ..+|+++.. .++++-++.... ..+. .+.. +.+++
T Consensus 179 ~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~~~p--~~l~--~ell-~~~~~ 253 (445)
T PRK14340 179 PFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAPEMRIRFTTSHP--KDIS--ESLV-RTIAA 253 (445)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCCCcEEEEccCCh--hhcC--HHHH-HHHHh
Confidence 34788887777666899989885433 146677654 345555554321 1121 1111 11222
Q ss_pred hcccccCCCCCcceEEEEeecccc----cCC----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCCC
Q 043818 102 FVTPYTKGGNGTLKLRYITAGNEI----IPG----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPSN 172 (344)
Q Consensus 102 ~v~~~~~~~~~~~~I~~I~VGNE~----l~~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps~ 172 (344)
. + .....|.+|=|- +.+ + ...+...+++.+|+.+ ..|.++|.. + -+||
T Consensus 254 ----~-~-----~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~-----pgi~i~td~----I-vGfP--- 310 (445)
T PRK14340 254 ----R-P-----NICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAI-----PGVTLSTDL----I-AGFC--- 310 (445)
T ss_pred ----C-C-----CCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----CCCEEeccE----E-EECC---
Confidence 1 1 123455555332 222 2 5777888888888764 246666653 2 2344
Q ss_pred cccchhhHHHHHHHHHHhhhcCCceeeeccCcccc
Q 043818 173 GSFATEVATTLNEISKFVYSKGAPLMINVYPYFTL 207 (344)
Q Consensus 173 g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~ 207 (344)
|. -...+.+.++|+.+.. +=.+++|+|--.
T Consensus 311 gE----T~edf~~tl~~~~~~~-~~~~~~f~~sp~ 340 (445)
T PRK14340 311 GE----TEEDHRATLSLMEEVR-FDSAFMFYYSVR 340 (445)
T ss_pred CC----CHHHHHHHHHHHHhcC-CCEEeeEEecCC
Confidence 21 1245667788877754 344566654433
No 80
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=26.26 E-value=1.5e+02 Score=24.10 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhcCCCCEEEEc--cCC---hhHHHHHhhCCCeEEE
Q 043818 39 ARVVEFLTKDLNYAIPSVRIF--DPE---PEVLSALATSNLSVCL 78 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY--~~d---~~vl~A~~~~gi~V~l 78 (344)
+++.+.++. +|++.|+++ +.. ..+|.+++..|++|.-
T Consensus 50 ~~~~~~~~~---~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKE---FGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHH---cCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 344555566 899999988 443 3789999999998653
No 81
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=25.93 E-value=1.2e+02 Score=28.02 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=44.0
Q ss_pred hHHHHHHHHhccccccccCCeeeEEecCCCCCCC--C-HHHHHHHHhhhhcCCCCEEEEccCCh----hHHHH-HhhCCC
Q 043818 3 IKVMLLAMALSHDSMAFGAGTVGINYGRLGNNLP--P-PARVVEFLTKDLNYAIPSVRIFDPEP----EVLSA-LATSNL 74 (344)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~Gv~Yg~~~~~~~--~-~~~v~~~lk~~~~~~~~~VRiY~~d~----~vl~A-~~~~gi 74 (344)
-|++|+.++|=|=...-.....=|.|-.+.+..- + .+.+.+.++. .+++.|.++.+.. .-|+. +...||
T Consensus 42 qKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~---~~~~~~~~~~P~d~~l~~~l~~~~~~~~i 118 (224)
T PF04244_consen 42 QKLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQ---HGIDRLHVMEPGDYRLEQRLESLAQQLGI 118 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHH---H----EEEE--S-HHHHHHHHH----SSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHH---cCCCEEEEECCCCHHHHHHHHhhhcccCC
Confidence 4777887887765433334456689988775443 3 3666688888 8999999999975 23333 334788
Q ss_pred eEEEeecCCchhHhhcCHHHHHHHHH
Q 043818 75 SVCLGVKNQDLAQMAGSMDYTRNWVR 100 (344)
Q Consensus 75 ~V~lGv~~~~~~~~~~~~~~a~~wv~ 100 (344)
+|.+=--. ..-...+...+|..
T Consensus 119 ~~~~~~~~----~Fl~s~~~f~~~~~ 140 (224)
T PF04244_consen 119 PLEVLEDP----HFLTSREEFAEWFE 140 (224)
T ss_dssp -EEEE--T----TSSS-HHHHHHHHT
T ss_pred ceEEeCCC----CccCCHHHHHHHHc
Confidence 77543221 12224555556644
No 82
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.31 E-value=5.8e+02 Score=24.94 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=36.4
Q ss_pred CeeeEEecCCCCCCCCHHHHHHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeecC
Q 043818 22 GTVGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKN 82 (344)
Q Consensus 22 ~~~Gv~Yg~~~~~~~~~~~v~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~~ 82 (344)
..+|||.-...++ +..++.++.+.. .+.+.|=+..-++...+.++..|++|+.-|+.
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e---~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRA---IKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHh---cCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 4677777544322 223445555555 56777766655565578888899999988873
No 83
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=25.15 E-value=5.9e+02 Score=25.42 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhcCCCCEEEEccC----------Ch------------hHHHHHhhCCCeEEEeecCCc------h-----
Q 043818 39 ARVVEFLTKDLNYAIPSVRIFDP----------EP------------EVLSALATSNLSVCLGVKNQD------L----- 85 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY~~----------d~------------~vl~A~~~~gi~V~lGv~~~~------~----- 85 (344)
+++...+|+ .|++.||+.-+ +| ++++.+.+.||.|++-+-.-. .
T Consensus 76 ~~~~~~ik~---~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~ 152 (407)
T COG2730 76 EEDFDQIKS---AGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYT 152 (407)
T ss_pred hhHHHHHHH---cCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCccccc
Confidence 455666677 99999999733 22 357778889999998753321 0
Q ss_pred hHhhcC----HHHHHHHHHHhcccccCCCCCcceEEEEeecccccC---CCCHhHH-HHHHHHHHHHHHhC
Q 043818 86 AQMAGS----MDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIP---GTEAVYV-LPAMKNIQQVLEQE 148 (344)
Q Consensus 86 ~~~~~~----~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~---~~~~~~L-~~~i~~v~~aL~~~ 148 (344)
.....+ ......| +.|...+. + ...|.++-+=||+.. +...... -++...|++.+...
T Consensus 153 ~~~~~~~~~~~~~~~~w--~~ia~~f~--~-~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 153 SDYKEENENVEATIDIW--KFIANRFK--N-YDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred ccccccchhHHHHHHHH--HHHHHhcc--C-CCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 011110 1111222 33333222 2 467778888899983 3322222 47777776555433
No 84
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=25.12 E-value=95 Score=31.50 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=31.0
Q ss_pred HHHHH-HHhhhhcCCCCEEEEccCC--h----hHHHHHhhCCCeEEEeecC
Q 043818 39 ARVVE-FLTKDLNYAIPSVRIFDPE--P----EVLSALATSNLSVCLGVKN 82 (344)
Q Consensus 39 ~~v~~-~lk~~~~~~~~~VRiY~~d--~----~vl~A~~~~gi~V~lGv~~ 82 (344)
++|++ +++....+|++.+|+||+- . ..++|++++|..+...+-.
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEe
Confidence 45554 3343344999999999984 2 4688889999877766654
No 85
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.07 E-value=1.7e+02 Score=24.48 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeec
Q 043818 39 ARVVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVK 81 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~ 81 (344)
..+.++|+. +|++.|=+...-+..+++|+..||+|+.+..
T Consensus 55 ~~~a~~l~~---~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVD---EGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHH---cCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 467888888 9999999988889999999999999999987
No 86
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.63 E-value=7.2e+02 Score=24.91 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=69.0
Q ss_pred CHHHHHHHHhhhhcCCCCEEEEccCCh--------------hHHHHHhh-CCC-eEEEeecCCchhHhhcCHHHHHHHHH
Q 043818 37 PPARVVEFLTKDLNYAIPSVRIFDPEP--------------EVLSALAT-SNL-SVCLGVKNQDLAQMAGSMDYTRNWVR 100 (344)
Q Consensus 37 ~~~~v~~~lk~~~~~~~~~VRiY~~d~--------------~vl~A~~~-~gi-~V~lGv~~~~~~~~~~~~~~a~~wv~ 100 (344)
++++|++.++.+...|++.|.+.+.+- ++|+++.. .|+ .+-++.... ..+ +.+.. +.++
T Consensus 154 s~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~i--~~ell-~~l~ 228 (418)
T PRK14336 154 SIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHP--KDI--SQKLI-DAMA 228 (418)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccCh--hhc--CHHHH-HHHH
Confidence 458888777776668898888875541 35555554 232 333332111 111 11211 1122
Q ss_pred HhcccccCCCCCcceEEEEeecccc----cCC----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeeecccccccccCCC
Q 043818 101 EFVTPYTKGGNGTLKLRYITAGNEI----IPG----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVLSAAALGSSYPPS 171 (344)
Q Consensus 101 ~~v~~~~~~~~~~~~I~~I~VGNE~----l~~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~~~~~~~~~~pps 171 (344)
+ + + .....+.+|=|- +.+ + ...++..+++.+|+++ .++.++|.. + -+||
T Consensus 229 ~----~-~-----~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----pgi~i~~d~----I-vGfP-- 286 (418)
T PRK14336 229 H----L-P-----KVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAM-----PDISLQTDL----I-VGFP-- 286 (418)
T ss_pred h----c-C-----ccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhC-----CCCEEEEEE----E-EECC--
Confidence 2 1 0 112344444333 222 2 4777888888888764 245666542 2 2344
Q ss_pred CcccchhhHHHHHHHHHHhhhcCCceeeeccCccc
Q 043818 172 NGSFATEVATTLNEISKFVYSKGAPLMINVYPYFT 206 (344)
Q Consensus 172 ~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~ 206 (344)
|. -...+...++|+.+.. +-.+|+++|--
T Consensus 287 -GE----T~edf~~tl~fi~~~~-~~~~~v~~ysp 315 (418)
T PRK14336 287 -SE----TEEQFNQSYKLMADIG-YDAIHVAAYSP 315 (418)
T ss_pred -CC----CHHHHHHHHHHHHhcC-CCEEEeeecCC
Confidence 11 1345667788877653 33456665543
No 87
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.63 E-value=7.2e+02 Score=24.92 Aligned_cols=145 Identities=13% Similarity=0.167 Sum_probs=72.6
Q ss_pred ecCCCCCCCCHHHHHHHHhhhhcCCCCEEEEccCC-----------------hhHHHHHhh-CCCe-EEEeecCCchhHh
Q 043818 28 YGRLGNNLPPPARVVEFLTKDLNYAIPSVRIFDPE-----------------PEVLSALAT-SNLS-VCLGVKNQDLAQM 88 (344)
Q Consensus 28 Yg~~~~~~~~~~~v~~~lk~~~~~~~~~VRiY~~d-----------------~~vl~A~~~-~gi~-V~lGv~~~~~~~~ 88 (344)
+|+..+ -++++|++.++.+...|++.|.+.+.+ ++.|.++.. .|++ +-++-.+. ..+
T Consensus 150 rG~~~s--r~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p--~~~ 225 (420)
T PRK14339 150 RGKEIS--IPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHP--LHM 225 (420)
T ss_pred cCCCCC--CCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCCh--hhc
Confidence 344444 257888887776666888888887643 145555554 3542 33321111 111
Q ss_pred hcCHHHHHHHHHHhcccccCCCCCcceEEEEeec----ccccCC----C-CHhHHHHHHHHHHHHHHhCCCCCeeEeeee
Q 043818 89 AGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAG----NEIIPG----T-EAVYVLPAMKNIQQVLEQENVPNVGVSTVL 159 (344)
Q Consensus 89 ~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VG----NE~l~~----~-~~~~L~~~i~~v~~aL~~~gl~~IkVsT~~ 159 (344)
+.+.. +.++++ + .....+.+| ++.+.+ + ..++.+.+++.+|+... ++.++|.
T Consensus 226 --~~ell-~~~~~~-----~-----~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p-----~i~i~~d- 286 (420)
T PRK14339 226 --DDKFL-EEFAKN-----P-----KICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVP-----EVSISTD- 286 (420)
T ss_pred --CHHHH-HHHHcC-----C-----CccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCC-----CCEEEEE-
Confidence 11211 112221 0 112344444 333222 2 47777888888887642 3566664
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHhhhcCCceeeeccCcccc
Q 043818 160 SAAALGSSYPPSNGSFATEVATTLNEISKFVYSKGAPLMINVYPYFTL 207 (344)
Q Consensus 160 ~~~~~~~~~pps~g~f~~~~~~~l~~~ldfL~~~~~~~~vNiyPyf~~ 207 (344)
++- +|| | +-...+.+.++|+.+.. +-.+++++|-..
T Consensus 287 ---~Iv-GfP---g----ETeedf~~Tl~fl~~l~-~~~~~~f~~sp~ 322 (420)
T PRK14339 287 ---IIV-GFP---G----ESDKDFEDTMDVLEKVR-FEQIFSFKYSPR 322 (420)
T ss_pred ---EEE-ECC---C----CCHHHHHHHHHHHHhcC-CCEEeeEecCCC
Confidence 222 344 1 11345667788876643 334577664433
No 88
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=24.44 E-value=1.1e+02 Score=30.65 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=32.4
Q ss_pred HHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeecC
Q 043818 42 VEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVKN 82 (344)
Q Consensus 42 ~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~~ 82 (344)
.++|+. .|+++||+.+.++.=+.++.+.||+|.=-++.
T Consensus 320 AqIL~d---LGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKA---LGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 578888 89999999999998888999999999855543
No 89
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.30 E-value=1.4e+02 Score=30.33 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHhCCCCCeeE
Q 043818 131 AVYVLPAMKNIQQVLEQENVPNVGV 155 (344)
Q Consensus 131 ~~~L~~~i~~v~~aL~~~gl~~IkV 155 (344)
..+.+..++...+.|.++||.++.+
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~~~~~ 286 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYVPIGL 286 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEec
Confidence 5566777888999999999944433
No 90
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=24.06 E-value=1.4e+02 Score=28.22 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=41.8
Q ss_pred hhCCCeEEEeecCC-----chhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCC----CHhHHHHHHHH
Q 043818 70 ATSNLSVCLGVKNQ-----DLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGT----EAVYVLPAMKN 140 (344)
Q Consensus 70 ~~~gi~V~lGv~~~-----~~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~----~~~~L~~~i~~ 140 (344)
+..|++|++.|-.. ....+..+.+.... +.++|..++. ...+.+|-+==|..... +...+...|+.
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~-f~~~i~~~l~----~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~ 144 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQN-FINNIVSFLK----KYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKE 144 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHH-HHHHHHHHHH----HHT-SEEEEEESSTTSTSSTTHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHH-HHHhhhhhhc----ccCcceeeeeeeeccccccchhhhhhhhhhhh
Confidence 45799998777543 22233334433333 3334444433 23466666654555333 46788999999
Q ss_pred HHHHHHhC
Q 043818 141 IQQVLEQE 148 (344)
Q Consensus 141 v~~aL~~~ 148 (344)
+|++|++.
T Consensus 145 L~~~l~~~ 152 (343)
T PF00704_consen 145 LRKALKRA 152 (343)
T ss_dssp HHHHHHHH
T ss_pred hhhhhccc
Confidence 99999885
No 91
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=24.04 E-value=1.1e+02 Score=30.21 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=29.6
Q ss_pred HHHHHhhhhcCCCCEEEEccCC-hhHHHHHhhCCCeEE
Q 043818 41 VVEFLTKDLNYAIPSVRIFDPE-PEVLSALATSNLSVC 77 (344)
Q Consensus 41 v~~~lk~~~~~~~~~VRiY~~d-~~vl~A~~~~gi~V~ 77 (344)
-.++|+. .|+++||+.+.+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~d---LGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKY---LGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHH---CCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3578888 899999999999 887888999999986
No 92
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=23.52 E-value=1.2e+02 Score=30.65 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=31.9
Q ss_pred HHHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeec
Q 043818 41 VVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVK 81 (344)
Q Consensus 41 v~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~ 81 (344)
-.++|+. .|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 338 gaqIL~~---LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVD---LGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHH---cCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 3578888 8999999999999888899999999974443
No 93
>PRK08815 GTP cyclohydrolase; Provisional
Probab=23.20 E-value=1.2e+02 Score=30.27 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=31.5
Q ss_pred HHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeec
Q 043818 42 VEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVK 81 (344)
Q Consensus 42 ~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~ 81 (344)
.++|+. .|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 305 AQIL~d---LGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRG---LGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHH---cCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 568888 8999999999999888899999999984444
No 94
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=23.11 E-value=1.7e+02 Score=31.63 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=43.6
Q ss_pred HHHHHh--hCCCeEEEeecCCchh--H---h-hcCHH-HH---HHHHHHhcccccCCCCCcceEEEEeecccccCCCCHh
Q 043818 65 VLSALA--TSNLSVCLGVKNQDLA--Q---M-AGSMD-YT---RNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAV 132 (344)
Q Consensus 65 vl~A~~--~~gi~V~lGv~~~~~~--~---~-~~~~~-~a---~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~ 132 (344)
+++-++ +.+|+|..=-|...-. . . ..+++ ++ .+|+.-.-+.| .-.|.+|-+=||--+
T Consensus 117 L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~------gl~idYvg~~NEr~~----- 185 (669)
T PF02057_consen 117 LMAEAKKRNPNIKLYGLPWGFPGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTH------GLDIDYVGIWNERGF----- 185 (669)
T ss_dssp HHHHHHHH-TT-EEEEEES-B-GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-----------EE-S-TTS-------
T ss_pred hHHHHHhhCCCCeEEEeccCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHh------CCCceEechhhccCC-----
Confidence 444444 4899999887764211 0 0 01111 22 36665443333 246788877777643
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEeeeecc
Q 043818 133 YVLPAMKNIQQVLEQENVPNVGVSTVLSA 161 (344)
Q Consensus 133 ~L~~~i~~v~~aL~~~gl~~IkVsT~~~~ 161 (344)
=..+++.+|++|.+.||.+|||-.++..
T Consensus 186 -~~~~ik~lr~~l~~~gy~~vkiva~D~~ 213 (669)
T PF02057_consen 186 -DVNYIKWLRKALNSNGYNKVKIVAADNN 213 (669)
T ss_dssp --HHHHHHHHHHHHHTT-TT-EEEEEEE-
T ss_pred -ChhHHHHHHHHHhhccccceEEEEeCCC
Confidence 2478999999999999988999888754
No 95
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=23.07 E-value=1.2e+02 Score=31.12 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=31.7
Q ss_pred HHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeec
Q 043818 42 VEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVK 81 (344)
Q Consensus 42 ~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~ 81 (344)
.++|+. .|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 373 AqIL~d---LGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRD---LGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 568888 8999999999999888899999999974444
No 96
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=23.06 E-value=1.2e+02 Score=31.90 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.7
Q ss_pred HHHHHhhhhcCCCCEEEEccCChhHHHHHhhCCCeEEEeec
Q 043818 41 VVEFLTKDLNYAIPSVRIFDPEPEVLSALATSNLSVCLGVK 81 (344)
Q Consensus 41 v~~~lk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lGv~ 81 (344)
-.++|+. .|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 342 gAQIL~d---LGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILND---LGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHH---cCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 3578888 8999999999999989999999999985454
No 97
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=21.45 E-value=1.5e+02 Score=23.74 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhccccccccC------CeeeEEecCCCCCCCCHHHHHHHHhhhhcCCCCEEEE
Q 043818 2 AIKVMLLAMALSHDSMAFGA------GTVGINYGRLGNNLPPPARVVEFLTKDLNYAIPSVRI 58 (344)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~------~~~Gv~Yg~~~~~~~~~~~v~~~lk~~~~~~~~~VRi 58 (344)
.||-+|+.++|..+...|-. ..+-|+-+..+...+...++.+.|+. .||..-++
T Consensus 6 ~WKyllil~vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~---~~I~~k~i 65 (101)
T PF13721_consen 6 LWKYLLILVVLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKA---AGIAVKSI 65 (101)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHH---CCCCcceE
Confidence 37777766555544333322 23445554445566777888889988 88765443
No 98
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=21.30 E-value=2.2e+02 Score=27.92 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=49.7
Q ss_pred hHHHHHhhCCCeEEEeecCCchhHhhcCHHHHHHHHHHhcccccCCCCCcceEEEEeecccccCCCCHhHHHHHHHHHHH
Q 043818 64 EVLSALATSNLSVCLGVKNQDLAQMAGSMDYTRNWVREFVTPYTKGGNGTLKLRYITAGNEIIPGTEAVYVLPAMKNIQQ 143 (344)
Q Consensus 64 ~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~~~~~I~~I~VGNE~l~~~~~~~L~~~i~~v~~ 143 (344)
.||+++.++|-.+.+|=.-.+ .+ +++.|..|+...+..++ +.|.+|+--|.-...+ +-+
T Consensus 176 ~VLkp~idsGkik~~Ge~~~d--~W--~ps~Aq~~men~lta~~------~~vdaVvA~nDgtagG-----------aI~ 234 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQWTD--GW--LPSNAQQIMENLLTANY------NDIDAVVAPNDGTAGG-----------AIA 234 (341)
T ss_pred HHHHHHhhCCceEEeeecccc--cc--CHHHHHHHHHHHHhccc------CceeEEEcCCCchhHH-----------HHH
Confidence 689988887754446653333 22 47788888988888774 4589998887754322 125
Q ss_pred HHHhCCC-CCeeEee
Q 043818 144 VLEQENV-PNVGVST 157 (344)
Q Consensus 144 aL~~~gl-~~IkVsT 157 (344)
+|++.|| +++|||=
T Consensus 235 aL~a~Gl~g~vpVsG 249 (341)
T COG4213 235 ALKAQGLAGKVPVSG 249 (341)
T ss_pred HHHhcccCCCCcccC
Confidence 6788999 6888764
No 99
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=21.07 E-value=2.1e+02 Score=23.70 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=26.9
Q ss_pred HHHHHHHhhhhcCCCCEEEEc--c--------CC---hhHHHHHhhCCCeEE
Q 043818 39 ARVVEFLTKDLNYAIPSVRIF--D--------PE---PEVLSALATSNLSVC 77 (344)
Q Consensus 39 ~~v~~~lk~~~~~~~~~VRiY--~--------~d---~~vl~A~~~~gi~V~ 77 (344)
+++.+..+. +|++.|+++ + +- +.+|++++..||+|.
T Consensus 53 ~~~~~~~~~---~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKE---RGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHH---cCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 455556666 899988887 3 33 368999999999975
No 100
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=20.25 E-value=1.6e+02 Score=28.68 Aligned_cols=42 Identities=10% Similarity=-0.103 Sum_probs=29.3
Q ss_pred HHHH-HHHhhhhcCCCCE-EEEccCChhHHHHHhhCCCeEEEeecCC
Q 043818 39 ARVV-EFLTKDLNYAIPS-VRIFDPEPEVLSALATSNLSVCLGVKNQ 83 (344)
Q Consensus 39 ~~v~-~~lk~~~~~~~~~-VRiY~~d~~vl~A~~~~gi~V~lGv~~~ 83 (344)
..++ ++|+. +|++. -.+....+-+.++++.-.|.|++.+|..
T Consensus 45 t~v~~~iLe~---~GY~V~e~~~~~~~~~~~ala~GdiDv~~~~W~P 88 (331)
T PRK11119 45 TLLVSRALEK---LGYDVNKPKEVDYNVFYTSIANGDATFTAVNWFP 88 (331)
T ss_pred HHHHHHHHHH---cCCceeeecccCcHHHHHHHHcCCCeEehhhccc
Confidence 4444 46676 78854 2233333678899999999999999975
No 101
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=20.04 E-value=1.9e+02 Score=23.53 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHHhhhhcCCCCEEEEc--cCC---hhHHHHHhhCCCeEEE
Q 043818 40 RVVEFLTKDLNYAIPSVRIF--DPE---PEVLSALATSNLSVCL 78 (344)
Q Consensus 40 ~v~~~lk~~~~~~~~~VRiY--~~d---~~vl~A~~~~gi~V~l 78 (344)
.+.+.++. .|++.|+++ +.. ..++.++..+|++|..
T Consensus 51 ~~~~~~~~---~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKE---LGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHC---TTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34444444 899998888 433 3689999999998753
Done!