Query 043823
Match_columns 454
No_of_seqs 228 out of 1560
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 6.4E-65 1.4E-69 504.7 32.9 308 98-450 1-313 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 9E-64 1.9E-68 487.7 29.9 317 93-450 7-329 (336)
3 PRK10625 tas putative aldo-ket 100.0 4.4E-61 9.6E-66 485.4 35.3 344 98-452 1-345 (346)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 1.1E-60 2.3E-65 482.2 33.2 314 97-447 12-334 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 8.8E-60 1.9E-64 470.5 33.1 308 100-444 1-316 (317)
6 COG0656 ARA1 Aldo/keto reducta 100.0 8.4E-58 1.8E-62 438.1 24.2 261 98-448 3-266 (280)
7 PLN02587 L-galactose dehydroge 100.0 1.4E-56 3.1E-61 446.9 32.6 297 100-449 1-303 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.8E-53 4E-58 418.5 30.9 282 100-443 1-284 (285)
9 PRK10376 putative oxidoreducta 100.0 1.1E-52 2.3E-57 414.3 30.7 274 101-447 10-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.5E-53 3.3E-58 418.7 24.3 278 112-445 1-282 (283)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.4E-52 3E-57 408.8 28.0 251 109-448 2-254 (267)
12 KOG1577 Aldo/keto reductase fa 100.0 1.7E-52 3.8E-57 401.3 23.7 276 100-449 6-288 (300)
13 PRK14863 bifunctional regulato 100.0 6.7E-52 1.5E-56 408.3 24.2 276 107-452 2-288 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 9.5E-51 2.1E-55 397.3 25.1 256 101-448 7-264 (275)
15 COG4989 Predicted oxidoreducta 100.0 8.4E-51 1.8E-55 373.6 21.6 288 98-445 1-292 (298)
16 COG1453 Predicted oxidoreducta 100.0 4.9E-48 1.1E-52 374.0 21.5 281 98-449 1-288 (391)
17 KOG1576 Predicted oxidoreducta 100.0 3E-46 6.5E-51 345.7 25.1 304 93-450 17-329 (342)
18 KOG3023 Glutamate-cysteine lig 97.2 0.00065 1.4E-08 63.5 5.7 73 255-335 155-227 (285)
19 PF00682 HMGL-like: HMGL-like 69.2 99 0.0021 29.1 12.5 138 123-296 10-151 (237)
20 PRK08195 4-hyroxy-2-oxovalerat 67.8 1.4E+02 0.0031 30.1 16.9 28 120-147 18-45 (337)
21 cd03319 L-Ala-DL-Glu_epimerase 66.2 86 0.0019 31.0 11.9 156 125-339 134-290 (316)
22 COG1748 LYS9 Saccharopine dehy 63.3 32 0.00069 35.4 8.1 80 127-234 79-158 (389)
23 PF05690 ThiG: Thiazole biosyn 60.0 47 0.001 31.7 7.9 115 111-271 9-125 (247)
24 COG0159 TrpA Tryptophan syntha 58.5 1.1E+02 0.0023 29.9 10.3 32 396-427 196-228 (265)
25 PRK10558 alpha-dehydro-beta-de 57.9 93 0.002 30.1 10.0 105 262-428 10-115 (256)
26 cd07939 DRE_TIM_NifV Streptomy 57.9 1.8E+02 0.0039 27.9 17.2 25 124-148 17-41 (259)
27 COG2102 Predicted ATPases of P 57.6 61 0.0013 30.6 8.2 105 252-393 72-177 (223)
28 TIGR00190 thiC thiamine biosyn 56.8 1.1E+02 0.0023 31.7 10.3 99 201-349 135-233 (423)
29 PRK13958 N-(5'-phosphoribosyl) 56.6 40 0.00086 31.5 7.0 72 204-305 10-82 (207)
30 PRK00087 4-hydroxy-3-methylbut 55.9 3.1E+02 0.0067 30.4 14.9 47 380-427 223-276 (647)
31 TIGR02026 BchE magnesium-proto 54.9 1.5E+02 0.0033 31.5 12.0 78 252-334 221-303 (497)
32 PRK09485 mmuM homocysteine met 53.8 2.3E+02 0.0051 28.0 12.4 130 125-277 44-189 (304)
33 PRK01045 ispH 4-hydroxy-3-meth 53.3 2.4E+02 0.0052 28.0 13.2 43 380-423 227-275 (298)
34 PRK13352 thiamine biosynthesis 51.8 1.5E+02 0.0032 30.8 10.4 136 201-403 138-283 (431)
35 PRK13796 GTPase YqeH; Provisio 50.1 2.3E+02 0.005 28.8 11.9 120 124-284 54-176 (365)
36 PF03102 NeuB: NeuB family; I 49.8 97 0.0021 29.7 8.5 113 124-283 53-184 (241)
37 TIGR00216 ispH_lytB (E)-4-hydr 48.4 75 0.0016 31.2 7.7 118 263-423 148-273 (280)
38 PRK00208 thiG thiazole synthas 48.1 1.7E+02 0.0037 28.2 9.7 63 202-281 72-134 (250)
39 TIGR03239 GarL 2-dehydro-3-deo 46.9 1.7E+02 0.0036 28.2 9.8 104 263-428 4-108 (249)
40 cd07943 DRE_TIM_HOA 4-hydroxy- 46.8 2.7E+02 0.0059 26.7 15.6 125 123-295 18-154 (263)
41 KOG3350 Uncharacterized conser 46.5 8.2 0.00018 35.1 0.6 20 8-27 136-155 (217)
42 COG0159 TrpA Tryptophan syntha 45.7 1.8E+02 0.0038 28.4 9.6 147 253-424 76-245 (265)
43 TIGR03217 4OH_2_O_val_ald 4-hy 45.5 3.3E+02 0.0072 27.4 18.7 27 121-147 18-44 (333)
44 cd04728 ThiG Thiazole synthase 45.2 1.2E+02 0.0026 29.2 8.2 63 202-281 72-134 (248)
45 PLN02363 phosphoribosylanthran 45.1 83 0.0018 30.5 7.3 73 204-305 56-129 (256)
46 PRK10128 2-keto-3-deoxy-L-rham 45.1 2.1E+02 0.0045 27.9 10.2 107 262-429 9-115 (267)
47 PRK07945 hypothetical protein; 45.0 2.9E+02 0.0062 27.8 11.6 85 221-331 191-287 (335)
48 cd07937 DRE_TIM_PC_TC_5S Pyruv 44.3 3.1E+02 0.0067 26.7 15.7 140 123-296 17-163 (275)
49 PF07021 MetW: Methionine bios 43.8 39 0.00085 31.2 4.6 106 211-341 63-172 (193)
50 COG0635 HemN Coproporphyrinoge 43.4 2.3E+02 0.005 29.5 10.9 118 110-281 148-276 (416)
51 PF02401 LYTB: LytB protein; 42.3 1.3E+02 0.0027 29.7 8.2 111 269-423 155-274 (281)
52 PRK01222 N-(5'-phosphoribosyl) 42.2 87 0.0019 29.3 6.9 73 204-306 12-85 (210)
53 TIGR03822 AblA_like_2 lysine-2 40.7 3.8E+02 0.0083 26.7 14.0 130 125-297 120-260 (321)
54 cd03174 DRE_TIM_metallolyase D 39.6 1.2E+02 0.0027 28.7 7.8 110 197-334 10-134 (265)
55 cd00954 NAL N-Acetylneuraminic 39.4 3.7E+02 0.008 26.2 11.2 113 202-335 17-135 (288)
56 COG3623 SgaU Putative L-xylulo 39.1 51 0.0011 31.4 4.6 74 105-185 65-156 (287)
57 COG0761 lytB 4-Hydroxy-3-methy 38.9 2.1E+02 0.0045 28.2 8.9 111 270-423 159-277 (294)
58 PF11242 DUF2774: Protein of u 38.7 38 0.00083 25.1 2.9 23 380-402 15-37 (63)
59 PRK12360 4-hydroxy-3-methylbut 38.4 1.6E+02 0.0034 29.0 8.2 111 269-423 157-274 (281)
60 PRK11235 bifunctional antitoxi 37.0 1.8E+02 0.0038 22.9 6.7 54 379-452 14-70 (80)
61 TIGR02666 moaA molybdenum cofa 36.1 4.4E+02 0.0096 26.1 15.1 135 124-296 43-183 (334)
62 cd03316 MR_like Mandelate race 36.1 4.6E+02 0.0099 26.2 12.1 159 125-335 139-298 (357)
63 cd03527 RuBisCO_small Ribulose 35.9 2.5E+02 0.0053 23.1 8.7 82 115-231 3-85 (99)
64 PRK04452 acetyl-CoA decarbonyl 34.3 3.4E+02 0.0074 27.2 9.9 96 215-337 84-184 (319)
65 COG2089 SpsE Sialic acid synth 33.9 5.1E+02 0.011 26.1 12.1 123 124-286 87-221 (347)
66 TIGR02660 nifV_homocitr homoci 32.5 5.5E+02 0.012 26.1 13.6 24 124-147 20-43 (365)
67 cd00950 DHDPS Dihydrodipicolin 31.9 4.8E+02 0.01 25.2 11.1 112 202-335 17-133 (284)
68 TIGR00126 deoC deoxyribose-pho 31.8 3E+02 0.0064 25.8 8.6 73 125-223 130-205 (211)
69 cd00405 PRAI Phosphoribosylant 31.7 4E+02 0.0087 24.3 10.8 38 223-281 73-110 (203)
70 COG0329 DapA Dihydrodipicolina 31.6 5.2E+02 0.011 25.5 15.0 118 203-340 22-143 (299)
71 PRK11858 aksA trans-homoaconit 31.6 5.8E+02 0.013 26.1 14.3 25 124-148 23-47 (378)
72 COG1751 Uncharacterized conser 31.4 1.9E+02 0.0042 25.7 6.6 77 122-222 9-85 (186)
73 PRK05588 histidinol-phosphatas 31.4 4.6E+02 0.01 24.9 16.1 177 127-334 16-215 (255)
74 PRK00164 moaA molybdenum cofac 30.9 5.3E+02 0.012 25.5 16.9 135 124-296 49-188 (331)
75 KOG0023 Alcohol dehydrogenase, 30.4 1.5E+02 0.0032 29.9 6.4 194 45-330 124-323 (360)
76 PRK09427 bifunctional indole-3 30.3 1.6E+02 0.0036 31.0 7.3 62 217-306 274-337 (454)
77 PF00101 RuBisCO_small: Ribulo 30.1 2.4E+02 0.0051 23.2 6.7 82 115-231 2-84 (99)
78 PRK13361 molybdenum cofactor b 30.0 5.6E+02 0.012 25.4 16.9 135 124-296 45-184 (329)
79 COG1140 NarY Nitrate reductase 30.0 12 0.00027 37.8 -1.0 23 267-289 262-284 (513)
80 PRK05283 deoxyribose-phosphate 29.4 3.8E+02 0.0083 26.0 9.0 79 125-225 144-227 (257)
81 TIGR02313 HpaI-NOT-DapA 2,4-di 29.0 5.6E+02 0.012 25.1 11.2 110 202-335 17-134 (294)
82 cd00408 DHDPS-like Dihydrodipi 28.4 5.2E+02 0.011 24.8 10.2 111 202-336 14-131 (281)
83 PRK08609 hypothetical protein; 28.0 8.1E+02 0.018 26.7 14.6 156 129-331 351-521 (570)
84 PRK07003 DNA polymerase III su 27.8 5.8E+02 0.013 29.1 11.1 59 204-281 100-160 (830)
85 KOG4175 Tryptophan synthase al 27.7 5.1E+02 0.011 24.3 9.8 61 383-443 70-142 (268)
86 KOG3086 Predicted dioxygenase 27.5 1.7E+02 0.0036 28.2 5.9 96 160-270 161-262 (296)
87 COG2069 CdhD CO dehydrogenase/ 27.2 5.4E+02 0.012 25.6 9.5 82 251-339 180-262 (403)
88 COG4130 Predicted sugar epimer 27.0 2.3E+02 0.0049 26.8 6.6 79 287-390 54-136 (272)
89 cd00952 CHBPH_aldolase Trans-o 27.0 1.8E+02 0.0038 28.9 6.6 112 202-335 25-142 (309)
90 cd01965 Nitrogenase_MoFe_beta_ 26.6 7.3E+02 0.016 25.7 12.6 62 223-297 116-184 (428)
91 PRK13803 bifunctional phosphor 26.6 2.2E+02 0.0047 31.3 7.7 75 204-306 12-87 (610)
92 PRK09061 D-glutamate deacylase 26.5 8.1E+02 0.018 26.1 12.0 117 128-280 170-286 (509)
93 TIGR00674 dapA dihydrodipicoli 26.4 6E+02 0.013 24.6 11.2 110 202-335 15-131 (285)
94 PRK03170 dihydrodipicolinate s 26.4 6.1E+02 0.013 24.6 11.1 112 202-335 18-134 (292)
95 cd03315 MLE_like Muconate lact 26.4 5.7E+02 0.012 24.3 12.4 157 125-340 85-243 (265)
96 cd07940 DRE_TIM_IPMS 2-isoprop 26.2 5.9E+02 0.013 24.4 15.1 86 253-344 140-230 (268)
97 PRK07328 histidinol-phosphatas 26.2 3.1E+02 0.0067 26.4 8.1 115 209-332 94-225 (269)
98 PF02679 ComA: (2R)-phospho-3- 25.6 1.1E+02 0.0024 29.4 4.6 86 126-231 83-168 (244)
99 PF10237 N6-adenineMlase: Prob 25.6 23 0.0005 31.8 0.0 19 6-24 85-103 (162)
100 cd00423 Pterin_binding Pterin 25.5 5.2E+02 0.011 24.8 9.4 107 203-336 21-128 (258)
101 PRK06294 coproporphyrinogen II 25.5 4.8E+02 0.01 26.5 9.6 103 110-279 114-241 (370)
102 PRK05692 hydroxymethylglutaryl 25.5 1.9E+02 0.004 28.5 6.3 99 209-334 28-139 (287)
103 PF11020 DUF2610: Domain of un 25.4 1.6E+02 0.0034 23.2 4.4 28 372-399 48-75 (82)
104 cd02810 DHOD_DHPD_FMN Dihydroo 25.0 3.1E+02 0.0067 26.6 7.9 88 125-231 109-197 (289)
105 PRK14461 ribosomal RNA large s 25.0 4.6E+02 0.0099 26.9 9.1 106 227-340 232-353 (371)
106 TIGR00683 nanA N-acetylneurami 25.0 6.5E+02 0.014 24.6 10.2 113 202-335 17-135 (290)
107 PRK00730 rnpA ribonuclease P; 24.8 3.7E+02 0.008 23.5 7.3 63 174-268 46-110 (138)
108 TIGR02311 HpaI 2,4-dihydroxyhe 24.4 5.8E+02 0.013 24.4 9.4 105 262-428 3-108 (249)
109 PRK12331 oxaloacetate decarbox 23.9 2.9E+02 0.0063 29.1 7.8 109 202-332 22-140 (448)
110 PF01904 DUF72: Protein of unk 23.6 6.2E+02 0.013 23.8 10.9 76 141-233 19-95 (230)
111 cd08583 PI-PLCc_GDPD_SF_unchar 23.5 6.1E+02 0.013 23.7 11.4 30 299-335 183-212 (237)
112 TIGR02090 LEU1_arch isopropylm 23.5 7.9E+02 0.017 24.9 14.2 25 124-148 19-43 (363)
113 PF00701 DHDPS: Dihydrodipicol 23.2 5.7E+02 0.012 24.7 9.4 112 202-335 18-134 (289)
114 PRK09058 coproporphyrinogen II 22.6 4.1E+02 0.009 27.8 8.7 103 110-279 174-302 (449)
115 PRK00507 deoxyribose-phosphate 21.8 4.2E+02 0.009 25.0 7.7 76 124-222 133-208 (221)
116 cd00951 KDGDH 5-dehydro-4-deox 21.8 7.5E+02 0.016 24.1 11.2 108 202-335 17-132 (289)
117 PRK09856 fructoselysine 3-epim 21.7 3.5E+02 0.0075 25.8 7.5 61 274-339 3-71 (275)
118 KOG0259 Tyrosine aminotransfer 21.7 9.2E+02 0.02 25.0 11.3 151 109-297 62-234 (447)
119 PRK09613 thiH thiamine biosynt 21.5 9.9E+02 0.021 25.4 11.6 86 201-307 113-202 (469)
120 PF14871 GHL6: Hypothetical gl 21.3 1E+02 0.0023 26.5 3.2 22 315-338 46-67 (132)
121 PLN02444 HMP-P synthase 21.3 7.7E+02 0.017 26.8 10.0 98 201-350 295-392 (642)
122 cd07944 DRE_TIM_HOA_like 4-hyd 21.1 5.4E+02 0.012 24.8 8.6 119 196-334 10-128 (266)
123 COG1751 Uncharacterized conser 20.6 6.2E+02 0.013 22.6 8.5 83 254-340 11-95 (186)
124 PRK14459 ribosomal RNA large s 20.6 6.2E+02 0.014 26.0 9.2 107 226-340 241-360 (373)
125 PRK12928 lipoyl synthase; Prov 20.6 5.3E+02 0.011 25.4 8.5 82 252-339 184-282 (290)
126 TIGR00973 leuA_bact 2-isopropy 20.6 1E+03 0.023 25.3 13.7 25 124-148 20-44 (494)
127 cd07943 DRE_TIM_HOA 4-hydroxy- 20.3 4.2E+02 0.0091 25.4 7.7 28 202-230 18-45 (263)
128 TIGR00048 radical SAM enzyme, 20.2 4.7E+02 0.01 26.5 8.3 103 227-340 219-334 (355)
129 PF02679 ComA: (2R)-phospho-3- 20.2 2.7E+02 0.0059 26.8 6.1 103 209-333 24-131 (244)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=6.4e-65 Score=504.71 Aligned_cols=308 Identities=43% Similarity=0.635 Sum_probs=265.9
Q ss_pred CcccccCCCCcccCceeeccccCCCC---CCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCC
Q 043823 98 MQYRKLGDSDLVISEITLGTMTFGEQ---NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQP 174 (454)
Q Consensus 98 m~~r~Lg~tgl~Vs~lglGt~~~g~~---~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~ 174 (454)
|.+++||++|++||+||||||.||+. .+.+++.++|++|+|+||||||||++|| .|.||++||+||+..+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg-------~g~sE~ilG~~l~~~~ 73 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYG-------DGRSEEILGEALKERG 73 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccC-------CCchHHHHHHHHhccC
Confidence 78999999999999999999999974 3455677899999999999999999999 7899999999999876
Q ss_pred -CCcEEEEeeccCCCCCccccccccc-ccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCC
Q 043823 175 -RDKVIIATKVSGYSERSSFLRDNAK-VLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPS 252 (454)
Q Consensus 175 -R~~v~I~TK~~~~~~~~~~~~~~~~-~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~ 252 (454)
|++|+|+||++....+ +... ..++++++|+++++.||+|||||||||||+|||| +.
T Consensus 74 ~Rd~vvIaTK~g~~~~~-----~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d-----------------~~ 131 (316)
T COG0667 74 RRDKVVIATKVGYRPGD-----PGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPD-----------------PE 131 (316)
T ss_pred CCCeEEEEEeeccCCCC-----CCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCC-----------------CC
Confidence 8999999999754321 1111 3578999999999999999999999999999998 46
Q ss_pred CCHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEE
Q 043823 253 VPIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLL 332 (454)
Q Consensus 253 ~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~vi 332 (454)
++.+|++++|.+|+++|||||||+||++.+++.++.+.+ .+++++|.+||++++ ..+.+++++|+ ++||+++
T Consensus 132 ~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-----~~~~~~Q~~ynl~~R-~~e~~l~~~~~--~~gi~~~ 203 (316)
T COG0667 132 TPIEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-----APIDSLQPEYNLLER-DAEKELLPLCR--EEGIGLL 203 (316)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-----CCceeecccCccccc-cchhHHHHHHH--HcCCeEE
Confidence 889999999999999999999999999999888777765 369999999999997 55667999999 9999999
Q ss_pred ecccccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeec
Q 043823 333 AYSPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIG 412 (454)
Q Consensus 333 a~spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G 412 (454)
+||||++|+|+|++... . .+.|....+ ....+..+...+.++.++++|+++|+||+|+||+|++++|.|+++|+|
T Consensus 204 ~~spla~G~Ltgk~~~~-~---~~~r~~~~~-~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~G 278 (316)
T COG0667 204 AYSPLASGLLTGKYLPG-P---EGSRASELP-RFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVG 278 (316)
T ss_pred EecCccccccCCCcCCC-c---chhhccccc-cchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeec
Confidence 99999999999999874 1 122211111 122334566778889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcCC
Q 043823 413 ATSVEQLKEDIDAFFTAERPLPQEVMADVEDIFKRYRD 450 (454)
Q Consensus 413 ~~~~~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~~~~ 450 (454)
+++++||++|+++++. .|++++++.|++.......
T Consensus 279 a~~~~qL~en~~A~~~---~L~~~~~~~l~~~~~~~~~ 313 (316)
T COG0667 279 ASKAEQLEENLAALDI---KLSEEELAALDEISAEEPT 313 (316)
T ss_pred CCCHHHHHHHHHHhcC---CCCHHHHHHHHHHhhhccC
Confidence 9999999999999999 8999999999988765543
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=9e-64 Score=487.68 Aligned_cols=317 Identities=38% Similarity=0.558 Sum_probs=275.2
Q ss_pred hhhccCcccccCCCCcccCceeecccc---CCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHH
Q 043823 93 AEKNAMQYRKLGDSDLVISEITLGTMT---FGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASW 169 (454)
Q Consensus 93 ~~~~~m~~r~Lg~tgl~Vs~lglGt~~---~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~a 169 (454)
++...|.+++||++|++||+||||||. ||+..+++++++++++|+|+|+||||||++|| .|.||+++|++
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg-------~~~~E~llg~~ 79 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYG-------NGQSEELLGEF 79 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcC-------CcccHHHHHHH
Confidence 345569999999999999999999953 46667999999999999999999999999999 78999999999
Q ss_pred hhc--CCCCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccC
Q 043823 170 LKS--QPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYS 247 (454)
Q Consensus 170 L~~--~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~ 247 (454)
|+. .+|++|+|+||++..... ......+...++..++.||+|||++||||||+||+|
T Consensus 80 i~~~~~~R~~vviaTK~~~~~~~-------~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D-------------- 138 (336)
T KOG1575|consen 80 IKSRGWRRDKVVIATKFGFDYGG-------ETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWD-------------- 138 (336)
T ss_pred HHhcCCcCCcEEEEEEEeccCCC-------cCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccC--------------
Confidence 996 469999999998744310 112456889999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCC
Q 043823 248 KWRPSVPIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNC 327 (454)
Q Consensus 248 ~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~ 327 (454)
+..|+++++++|.+++++|+|||||+|+++++++.++...+. .++.++|++||++.|...+.+++++|+ ++
T Consensus 139 ---~~~piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~----~p~~s~Q~eysl~~Rd~ee~~i~~~c~--~~ 209 (336)
T KOG1575|consen 139 ---PMVPIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAP----IPIVAVQVEYSLLSRDKEERGIIPLCR--EL 209 (336)
T ss_pred ---CCCCHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcC----CCceEeeeechhhhcchhhhhHHHHHH--Hc
Confidence 678999999999999999999999999999999988877764 359999999999999778888999999 99
Q ss_pred CeeEEecccccCCcCCCccCCCCchhhcccccccCcchhhhhcc-hHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Q 043823 328 NIGLLAYSPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNT-SLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFM 406 (454)
Q Consensus 328 gi~via~spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v 406 (454)
||++++||||++|+|+|++......+..+.+. .++++..++.. ..+...++++.++|+++|+|++|+||+|+++++.+
T Consensus 210 Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v 288 (336)
T KOG1575|consen 210 GIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRF-QFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKV 288 (336)
T ss_pred CcceEEecccccceeccCcccccccccccccc-cccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999988764434333322 23333333333 55678889999999999999999999999999999
Q ss_pred eEEeecCCCHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcCC
Q 043823 407 TSSIIGATSVEQLKEDIDAFFTAERPLPQEVMADVEDIFKRYRD 450 (454)
Q Consensus 407 ~~vI~G~~~~~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~~~~ 450 (454)
++||||+++++||+||++|+.. .|+++++..|+++.+....
T Consensus 289 ~~pIpG~s~ve~l~eni~Al~~---~Lt~e~~~~l~~~~~~~~~ 329 (336)
T KOG1575|consen 289 SSPIPGASKIEQLKENIGALSV---KLTPEEIKELEEIIDKILG 329 (336)
T ss_pred EEecCCCCcHHHHHHHHhhhhc---cCCHHHHHHHHHhhccccC
Confidence 9999999999999999999999 9999999999999877643
No 3
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.4e-61 Score=485.44 Aligned_cols=344 Identities=47% Similarity=0.805 Sum_probs=272.1
Q ss_pred CcccccCCCCcccCceeeccccCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcC-CCC
Q 043823 98 MQYRKLGDSDLVISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ-PRD 176 (454)
Q Consensus 98 m~~r~Lg~tgl~Vs~lglGt~~~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~-~R~ 176 (454)
|+|++||+||++||+||||||.||...+++++.++|++|+++||||||||+.||.+...+..|.||++||++|+.. +|+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~ 80 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSRE 80 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcc
Confidence 7899999999999999999999997667899999999999999999999999985433333588999999999843 599
Q ss_pred cEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHH
Q 043823 177 KVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIV 256 (454)
Q Consensus 177 ~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~ 256 (454)
+++|+||++....... .......+++++.++++|++||+|||+|||||||+|||+.....++...+...+-.+..+++
T Consensus 81 ~v~i~TK~~~~~~~~~--~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T PRK10625 81 KLIIASKVSGPSRNND--KGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLL 158 (346)
T ss_pred eEEEEcccccCCcCCC--CCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHH
Confidence 9999999853211000 00000124689999999999999999999999999999742111111110000000135688
Q ss_pred HHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEeccc
Q 043823 257 EQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSP 336 (454)
Q Consensus 257 e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~sp 336 (454)
++|++|++|+++||||+||||||+.+++.++...+...+.+.+.++|++||++++. .+.+++++|+ ++||++++|+|
T Consensus 159 e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~-~~~~ll~~~~--~~gi~via~sp 235 (346)
T PRK10625 159 ETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRS-FEVGLAEVSQ--YEGVELLAYSC 235 (346)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCccccc-chhHHHHHHH--HcCCeEEEecc
Confidence 99999999999999999999999999998888777766667789999999999983 4568999999 99999999999
Q ss_pred ccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCH
Q 043823 337 LGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSV 416 (454)
Q Consensus 337 L~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~ 416 (454)
|++|+|+|++..... + .+.+...+..+ .++......+.++.++++|+++|+|++|+||+|++++|.|+++|+|++++
T Consensus 236 L~~G~Ltg~~~~~~~-~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~ 312 (346)
T PRK10625 236 LAFGTLTGKYLNGAK-P-AGARNTLFSRF-TRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTM 312 (346)
T ss_pred ccCeeccCCCCCCCC-C-CCccccccccc-ccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCH
Confidence 999999998754321 1 11111111111 12223445677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcCCCC
Q 043823 417 EQLKEDIDAFFTAERPLPQEVMADVEDIFKRYRDPT 452 (454)
Q Consensus 417 ~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~~~~~~ 452 (454)
+||++|++++++ +|+++++++|+++.+.+.-|.
T Consensus 313 ~~l~en~~a~~~---~L~~~~~~~l~~~~~~~~~~~ 345 (346)
T PRK10625 313 EQLKTNIESLHL---TLSEEVLAEIEAVHQVYTYPA 345 (346)
T ss_pred HHHHHHHhhccC---CCCHHHHHHHHHHHhhcCCCC
Confidence 999999999998 899999999999998776553
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.1e-60 Score=482.22 Aligned_cols=314 Identities=28% Similarity=0.414 Sum_probs=260.6
Q ss_pred cCcccccCCCCcccCceeecccc-CCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcC--
Q 043823 97 AMQYRKLGDSDLVISEITLGTMT-FGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ-- 173 (454)
Q Consensus 97 ~m~~r~Lg~tgl~Vs~lglGt~~-~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~-- 173 (454)
.|+||+||+||++||+||||||. +|...+.+++.++|++|+++|||+||||+.||.+ .|.||+.||++|+..
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~-----~g~sE~~lG~~l~~~~~ 86 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPP-----PGSAEENFGRLLREDFA 86 (346)
T ss_pred CcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCC-----CCCcHHHHHHHHHhccc
Confidence 39999999999999999999996 7655567788999999999999999999999831 378999999999853
Q ss_pred -CCCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCC
Q 043823 174 -PRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPS 252 (454)
Q Consensus 174 -~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~ 252 (454)
+|+++||+||++...... ....+.++++++++|++||+|||+||||+|++|+|+ +.
T Consensus 87 ~~Rd~~~I~TK~g~~~~~~------~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~-----------------~~ 143 (346)
T PRK09912 87 AYRDELIISTKAGYDMWPG------PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVD-----------------EN 143 (346)
T ss_pred CCCCeEEEEEEecccCCCC------cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCC-----------------CC
Confidence 599999999986421100 001235799999999999999999999999999997 34
Q ss_pred CCHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEE
Q 043823 253 VPIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLL 332 (454)
Q Consensus 253 ~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~vi 332 (454)
.+.++++++|++|+++||||+||||||+.++++++.+.+...+. +++++|++||++++.....+++++|+ ++||+++
T Consensus 144 ~~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~-~~~~~Q~~ynll~~~~~~~~ll~~~~--~~gI~vi 220 (346)
T PRK09912 144 TPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKI-PLLIHQPSYNLLNRWVDKSGLLDTLQ--NNGVGCI 220 (346)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCC-CcEEeeccCCceecccchhhHHHHHH--HcCceEE
Confidence 56889999999999999999999999999998888877665544 47899999999998544467999999 9999999
Q ss_pred ecccccCCcCCCccCCCCchhhcccccc----cCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeE
Q 043823 333 AYSPLGGGSLTGKYLDINSEAARKGRLN----LFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTS 408 (454)
Q Consensus 333 a~spL~~G~Ltg~~~~~~~~~~~~~r~~----~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~ 408 (454)
+|+||++|+|++++....+ .+.+.. ....+..++.++.+.+.++.+.++|+++|+|++|+||+|++++|.|++
T Consensus 221 a~spl~~G~Lt~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~ 297 (346)
T PRK09912 221 AFTPLAQGLLTGKYLNGIP---QDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTS 297 (346)
T ss_pred EehhhcCccccCCCCCCCC---CCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeE
Confidence 9999999999998754321 111110 001122233344556778899999999999999999999999999999
Q ss_pred EeecCCCHHHHHHHHHHcc-cCCCCCCHHHHHHHHHHHhh
Q 043823 409 SIIGATSVEQLKEDIDAFF-TAERPLPQEVMADVEDIFKR 447 (454)
Q Consensus 409 vI~G~~~~~~l~enl~a~~-~~~~~L~~e~~~~L~~~~~~ 447 (454)
+|+|+++++||++|++++. + +|+++++++|+++.++
T Consensus 298 ~i~G~~~~~ql~en~~a~~~~---~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 298 VLIGASRAEQLEENVQALNNL---TFSTEELAQIDQHIAD 334 (346)
T ss_pred EEeCCCCHHHHHHHHhhhcCC---CCCHHHHHHHHHhhCc
Confidence 9999999999999999984 6 8999999999998754
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=8.8e-60 Score=470.49 Aligned_cols=308 Identities=29% Similarity=0.460 Sum_probs=254.7
Q ss_pred ccccCCCCcccCceeecccc-CCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhc--CCCC
Q 043823 100 YRKLGDSDLVISEITLGTMT-FGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKS--QPRD 176 (454)
Q Consensus 100 ~r~Lg~tgl~Vs~lglGt~~-~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~--~~R~ 176 (454)
||.||++|++||+||||||. +|...+++++.++|++|+++|||+||||++|| .|.||++||+||+. .+|+
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg-------~g~sE~~lG~~l~~~~~~R~ 73 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYA-------AGKAEVVLGNILKKKGWRRS 73 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccC-------CCccHHHHHHHHHhcCCCcc
Confidence 57899999999999999997 56556888999999999999999999999998 68999999999984 3599
Q ss_pred cEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHH
Q 043823 177 KVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIV 256 (454)
Q Consensus 177 ~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~ 256 (454)
+++|+||++..... ....+++++.++++|++||+|||+||||+|++|||+ +..+.+
T Consensus 74 ~~~iaTK~~~~~~~-------~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~-----------------~~~~~~ 129 (317)
T TIGR01293 74 SYVITTKIFWGGKA-------ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPD-----------------PNTPME 129 (317)
T ss_pred cEEEEeeeccCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCC-----------------CCCCHH
Confidence 99999997421100 001245899999999999999999999999999997 345688
Q ss_pred HHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEeccc
Q 043823 257 EQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSP 336 (454)
Q Consensus 257 e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~sp 336 (454)
++|++|++|+++||||+||||||+.+++.++...+...+...++++|++||++++...+.+++++|+ ++||++++|+|
T Consensus 130 e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~--~~gi~v~a~sp 207 (317)
T TIGR01293 130 ETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYH--KIGVGAMTWSP 207 (317)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHH--HcCCeEEEecc
Confidence 9999999999999999999999999998887777766665678899999999998544668999999 99999999999
Q ss_pred ccCCcCCCccCCCCchhhcccccc--cCcchhhhh---cchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEee
Q 043823 337 LGGGSLTGKYLDINSEAARKGRLN--LFPGYMERY---NTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSII 411 (454)
Q Consensus 337 L~~G~Ltg~~~~~~~~~~~~~r~~--~~~~~~~~~---~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~ 411 (454)
|++|+|+|++.... + .+.+.. .++.+...+ ......+.++.|+++|+++|+|++|+||+|++++|.|+++|+
T Consensus 208 l~~G~Ltg~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~ 284 (317)
T TIGR01293 208 LACGLVSGKYDSGI--P-PYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLL 284 (317)
T ss_pred ccccccCCCCCCCC--C-CcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEe
Confidence 99999999875431 1 111211 000000000 112345667889999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHcccCCCCCCHHHHHHHHHH
Q 043823 412 GATSVEQLKEDIDAFFTAERPLPQEVMADVEDI 444 (454)
Q Consensus 412 G~~~~~~l~enl~a~~~~~~~L~~e~~~~L~~~ 444 (454)
|+++++|+++|+++++.. .+|+++++++|+++
T Consensus 285 G~~~~~ql~en~~a~~~~-~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 285 GASSAEQLMENLGSLQVL-PKLSSSIIHEIDSI 316 (317)
T ss_pred CCCCHHHHHHHHHHhhcc-CCCCHHHHHHHHhh
Confidence 999999999999998741 16999999999975
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=8.4e-58 Score=438.07 Aligned_cols=261 Identities=33% Similarity=0.468 Sum_probs=228.9
Q ss_pred CcccccCCCCcccCceeeccccCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhc--CCC
Q 043823 98 MQYRKLGDSDLVISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKS--QPR 175 (454)
Q Consensus 98 m~~r~Lg~tgl~Vs~lglGt~~~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~--~~R 175 (454)
|.+.+|++ |.+||.||||||.+++. +.+.+.+.+|++.|+|+||||..|| ||+.+|+++++ ++|
T Consensus 3 ~~~~~l~~-g~~iP~iGlGt~~~~~~---~~~~~av~~Al~~Gyr~IDTA~~Yg----------nE~~VG~aI~~s~v~R 68 (280)
T COG0656 3 KTKVTLNN-GVEIPAIGLGTWQIGDD---EWAVRAVRAALELGYRLIDTAEIYG----------NEEEVGEAIKESGVPR 68 (280)
T ss_pred CceeecCC-CCcccCcceEeeecCCc---hhHHHHHHHHHHhCcceEecHhHhc----------CHHHHHHHHHhcCCCH
Confidence 45567765 77899999999988753 3388999999999999999999997 89999999985 679
Q ss_pred CcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCH
Q 043823 176 DKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPI 255 (454)
Q Consensus 176 ~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~ 255 (454)
+++||+||+|... .+++.+.+++++||+|||+||||||+||||... ....+
T Consensus 69 eelFittKvw~~~--------------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~---------------~~~~~ 119 (280)
T COG0656 69 EELFITTKVWPSD--------------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPN---------------KYVVI 119 (280)
T ss_pred HHeEEEeecCCcc--------------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCc---------------cCccH
Confidence 9999999998753 367999999999999999999999999999620 01227
Q ss_pred HHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecc
Q 043823 256 VEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYS 335 (454)
Q Consensus 256 ~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~s 335 (454)
+|+|.+|++++++|+||+||||||+.++++++++.++ ..|+++|++||++.+ +.+++++|+ ++||.++|||
T Consensus 120 ~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~----~~p~~NQIe~hp~~~---q~el~~~~~--~~gI~v~Ays 190 (280)
T COG0656 120 EETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAK----VKPAVNQIEYHPYLR---QPELLPFCQ--RHGIAVEAYS 190 (280)
T ss_pred HHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcC----CCCceEEEEeccCCC---cHHHHHHHH--HcCCEEEEEC
Confidence 8999999999999999999999999999999888743 369999999999988 345999999 9999999999
Q ss_pred cccCCc-CCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCC
Q 043823 336 PLGGGS-LTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGAT 414 (454)
Q Consensus 336 pL~~G~-Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~ 414 (454)
||+.|. +.. + ..+.+||++||.|++|++|+|+++++ .++||.++
T Consensus 191 PL~~g~~l~~----~-----------------------------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~ 235 (280)
T COG0656 191 PLAKGGKLLD----N-----------------------------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKST 235 (280)
T ss_pred Cccccccccc----C-----------------------------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCC
Confidence 999753 211 0 26999999999999999999999999 45999999
Q ss_pred CHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 043823 415 SVEQLKEDIDAFFTAERPLPQEVMADVEDIFKRY 448 (454)
Q Consensus 415 ~~~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~~ 448 (454)
+++|++||++++++ .|++|||+.|+++....
T Consensus 236 ~~~ri~eN~~~~~f---~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 236 TPERIRENLAAFDF---ELSEEDMAAIDALDRGY 266 (280)
T ss_pred CHHHHHHHHhhhcC---CCCHHHHHHHHhhcccc
Confidence 99999999999999 89999999999998765
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.4e-56 Score=446.89 Aligned_cols=297 Identities=26% Similarity=0.375 Sum_probs=246.0
Q ss_pred ccccCCCCcccCceeeccccCCC---CCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhc--CC
Q 043823 100 YRKLGDSDLVISEITLGTMTFGE---QNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKS--QP 174 (454)
Q Consensus 100 ~r~Lg~tgl~Vs~lglGt~~~g~---~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~--~~ 174 (454)
||+||+||++||.||||||+||. ..+++++.++|++|+++|||+||||+.|| .|.||+.+|++|++ .+
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------~g~sE~~lG~al~~~~~~ 73 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYG-------GTLSEKVLGKALKALGIP 73 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccC-------CCchHHHHHHHHHhCCCC
Confidence 68899999999999999999874 35788999999999999999999999998 78899999999986 36
Q ss_pred CCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCC
Q 043823 175 RDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVP 254 (454)
Q Consensus 175 R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~ 254 (454)
|+++||+||++.... ..+++++.+++++++||+|||+||||+|+||+|+.. + ...+
T Consensus 74 R~~v~I~TK~~~~~~----------~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~------------~--~~~~ 129 (314)
T PLN02587 74 REKYVVSTKCGRYGE----------GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFG------------S--LDQI 129 (314)
T ss_pred cceEEEEeccccCCC----------CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCc------------c--hhhh
Confidence 999999999864311 024589999999999999999999999999998620 0 1234
Q ss_pred HHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEec
Q 043823 255 IVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAY 334 (454)
Q Consensus 255 ~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~ 334 (454)
.+++|++|++|+++||||+||+|||+.+++..+..... .+...+.++|+.||++++ ...+++++|+ ++||++++|
T Consensus 130 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~~ll~~~~--~~gi~v~a~ 204 (314)
T PLN02587 130 VNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVP-PGTVDVILSYCHYSLNDS--SLEDLLPYLK--SKGVGVISA 204 (314)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhh-cCCCCeEEeccccCcchh--hHHHHHHHHH--HcCceEEEe
Confidence 67899999999999999999999999887766665432 233356667899999876 2358999999 999999999
Q ss_pred ccccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCC
Q 043823 335 SPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGAT 414 (454)
Q Consensus 335 spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~ 414 (454)
+||++|+|+++..... .+ ..+...+.++.++++|+++|+|++|+||+|++++|.|++||+|++
T Consensus 205 spl~~G~L~~~~~~~~-----------~~------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~ 267 (314)
T PLN02587 205 SPLAMGLLTENGPPEW-----------HP------APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMN 267 (314)
T ss_pred chhhccccCCCCCCCC-----------CC------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCC
Confidence 9999999998632110 00 113345667889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcccCC-CCCCHHHHHHHHHHHhhcC
Q 043823 415 SVEQLKEDIDAFFTAE-RPLPQEVMADVEDIFKRYR 449 (454)
Q Consensus 415 ~~~~l~enl~a~~~~~-~~L~~e~~~~L~~~~~~~~ 449 (454)
+++||++|+++++... .+|+++++++|+++.....
T Consensus 268 ~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~~~ 303 (314)
T PLN02587 268 SVQQVEENVAAATELETSGIDEELLSEVEAILAPVK 303 (314)
T ss_pred CHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcccc
Confidence 9999999999976310 1699999999999886433
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.8e-53 Score=418.49 Aligned_cols=282 Identities=40% Similarity=0.591 Sum_probs=243.6
Q ss_pred ccccCCCCcccCceeeccccCCCC-CCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCC-CCc
Q 043823 100 YRKLGDSDLVISEITLGTMTFGEQ-NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQP-RDK 177 (454)
Q Consensus 100 ~r~Lg~tgl~Vs~lglGt~~~g~~-~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~-R~~ 177 (454)
+++||+||++||.||||||.++.. .+.+++.+++++|++.|||+||||+.|| .|.||+.+|++|+..+ |++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg-------~g~sE~~lG~al~~~~~R~~ 73 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYG-------DGESEELLGEALKERGPREE 73 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccC-------CCCCHHHHHHHHhccCCcCc
Confidence 578999999999999999988753 3678999999999999999999999998 7889999999999876 999
Q ss_pred EEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHH
Q 043823 178 VIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVE 257 (454)
Q Consensus 178 v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e 257 (454)
++|+||++..... ..+++++.+++++++||++||+||||+|+||+|+. ......+
T Consensus 74 ~~i~tK~~~~~~~---------~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~----------------~~~~~~~ 128 (285)
T cd06660 74 VFIATKVGPRPGD---------GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDP----------------DTPDIEE 128 (285)
T ss_pred EEEEeeecCCCCC---------CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCC----------------CCCCHHH
Confidence 9999999754210 03568999999999999999999999999999973 1113789
Q ss_pred HHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccc
Q 043823 258 QLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPL 337 (454)
Q Consensus 258 ~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL 337 (454)
+|++|++++++|+||+||||||+.+.+.++++.+ ...++++|++||++++. .+.+++++|+ ++||++++|+||
T Consensus 129 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~----~~~~~~~q~~~n~~~~~-~~~~~~~~~~--~~gi~v~~~~~l 201 (285)
T cd06660 129 TLRALEELVKEGKIRAIGVSNFSAEQLEEALAAA----GVPPAVNQVEYNLLDRQ-AEEELLPYCR--EHGIGVIAYSPL 201 (285)
T ss_pred HHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhh----CCCceEEecccCcccCc-hHHHHHHHHH--HcCcEEEEeccc
Confidence 9999999999999999999999988777776655 24799999999999984 3347999999 999999999999
Q ss_pred cCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCHH
Q 043823 338 GGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSVE 417 (454)
Q Consensus 338 ~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~~ 417 (454)
++|.++++.......+ .......+..++++++++++|+||+|++++|.++++|+|+++++
T Consensus 202 ~~g~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~ 261 (285)
T cd06660 202 AGGLLTGKYLPGAPPP--------------------EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPE 261 (285)
T ss_pred cCceecCCCCCCCCCC--------------------hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHH
Confidence 9999887644332100 01134679999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCCCHHHHHHHHH
Q 043823 418 QLKEDIDAFFTAERPLPQEVMADVED 443 (454)
Q Consensus 418 ~l~enl~a~~~~~~~L~~e~~~~L~~ 443 (454)
|+++|++++.+ +|++++++.|++
T Consensus 262 ~l~~n~~~~~~---~L~~~~~~~l~~ 284 (285)
T cd06660 262 RLEENLAALDF---ELSDEDLAALDA 284 (285)
T ss_pred HHHHHHhhccC---CCCHHHHHHHhh
Confidence 99999999977 999999999986
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-52 Score=414.31 Aligned_cols=274 Identities=27% Similarity=0.382 Sum_probs=228.0
Q ss_pred cccCCCCcccCceeeccccCCC------CCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCC
Q 043823 101 RKLGDSDLVISEITLGTMTFGE------QNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQP 174 (454)
Q Consensus 101 r~Lg~tgl~Vs~lglGt~~~g~------~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~ 174 (454)
..|+ |++||+||||||+||+ ..+++++.++|++|+++|||+||||+.|| .|.+|++||++++. .
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------~~~sE~~lg~~l~~-~ 79 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYG-------PHVTNQLIREALHP-Y 79 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcC-------CCcHHHHHHHHHhc-C
Confidence 3454 8999999999999864 23678899999999999999999999999 68899999999975 4
Q ss_pred CCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCC
Q 043823 175 RDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVP 254 (454)
Q Consensus 175 R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~ 254 (454)
|+++||+||++..... ......+.+++.++++|++||+|||+||||+|++|+++. .+|....+
T Consensus 80 R~~~~i~TK~g~~~~~-----~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~------------~h~p~~~~ 142 (290)
T PRK10376 80 PDDLTIVTKVGARRGE-----DGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGD------------GHGPAEGS 142 (290)
T ss_pred CCeEEEEeeecccCCC-----CCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCC------------CCCCCCCC
Confidence 9999999998542110 000113568999999999999999999999999998631 11112245
Q ss_pred HHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEec
Q 043823 255 IVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAY 334 (454)
Q Consensus 255 ~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~ 334 (454)
.+++|++|++|+++||||+||||||+.+++.++.+. ..++++|++||++++. ..+++++|+ ++||++++|
T Consensus 143 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~------~~~~~~q~~~~~~~~~--~~~~~~~~~--~~gi~v~a~ 212 (290)
T PRK10376 143 IEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKI------AEIVCVQNHYNLAHRA--DDALIDALA--RDGIAYVPF 212 (290)
T ss_pred HHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhh------CCeEEEecccCCCcCC--hHHHHHHHH--HcCCEEEEe
Confidence 789999999999999999999999999887766543 2589999999999873 457999999 999999999
Q ss_pred ccccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCC
Q 043823 335 SPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGAT 414 (454)
Q Consensus 335 spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~ 414 (454)
+||+++.. . ..+.+.++|+++|+|++|+||+|+++++.++++|+|++
T Consensus 213 ~pL~g~~~------~---------------------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~ 259 (290)
T PRK10376 213 FPLGGFTP------L---------------------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTS 259 (290)
T ss_pred ecCCCCCh------h---------------------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCC
Confidence 99974310 0 01468899999999999999999999877778999999
Q ss_pred CHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhh
Q 043823 415 SVEQLKEDIDAFFTAERPLPQEVMADVEDIFKR 447 (454)
Q Consensus 415 ~~~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~ 447 (454)
+++|+++|++++++ .|++++++.|+++.++
T Consensus 260 ~~~~l~en~~a~~~---~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 260 SVAHLRENLAAAEL---VLSEEVLAELDGIARE 289 (290)
T ss_pred CHHHHHHHHhhccC---CCCHHHHHHHHHHHhc
Confidence 99999999999998 8999999999998653
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.5e-53 Score=418.68 Aligned_cols=278 Identities=40% Similarity=0.607 Sum_probs=229.9
Q ss_pred ceeeccccCCC-CCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhc--CCCCcEEEEeeccCCC
Q 043823 112 EITLGTMTFGE-QNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKS--QPRDKVIIATKVSGYS 188 (454)
Q Consensus 112 ~lglGt~~~g~-~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~--~~R~~v~I~TK~~~~~ 188 (454)
+||||||++|+ ..+.+++.++|+.|++.|||+||||+.|| .|.||+.||++|+. .+|++++|+||+....
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~-------~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYG-------NGRSERILGRALRKSRVPRDDIFISTKVYGDG 73 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGG-------GGTHHHHHHHHHHHTSSTGGGSEEEEEEESSS
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeeccccccc-------cccccccccccccccccccccccccccccccc
Confidence 58999999987 78999999999999999999999999998 78899999999997 6799999999992111
Q ss_pred CCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCC-HHHHHHHHHHHHH
Q 043823 189 ERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVP-IVEQLRAFKELID 267 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~-~~e~~~aL~~L~~ 267 (454)
....+++++.+++++++||+|||+||||+|++|+|+. ... .+++|++|++|++
T Consensus 74 ---------~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-----------------~~~~~~~~~~~l~~l~~ 127 (283)
T PF00248_consen 74 ---------KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDP-----------------SEDALEEVWEALEELKK 127 (283)
T ss_dssp ---------STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSST-----------------TSSHHHHHHHHHHHHHH
T ss_pred ---------cccccccccccccccccccccccccchhccccccccc-----------------cccccchhhhhhhhccc
Confidence 1124668999999999999999999999999999983 344 8999999999999
Q ss_pred cCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCCcCCCccC
Q 043823 268 EGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYL 347 (454)
Q Consensus 268 ~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~~~ 347 (454)
+|+||+||||||+.+.+.++ ...+..+++++|++||++++ ....+++++|+ ++||++++|+||++|+|++++.
T Consensus 128 ~G~ir~iGvs~~~~~~l~~~----~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~--~~gi~v~a~~~l~~G~l~~~~~ 200 (283)
T PF00248_consen 128 EGKIRHIGVSNFSPEQLEAA----LKIGSIPPDVVQINYNLLNR-REEEGLLEFCR--EHGIGVIAYSPLAGGLLTGKYK 200 (283)
T ss_dssp TTSEEEEEEES--HHHHHHH----HTCTSS-ESEEEEE-BTTBH-BGGHHHHHHHH--HTT-EEEEESTTGGGCGGTTTT
T ss_pred cccccccccccccccccccc----cccccccccccccccccccc-ccccccccccc--ccccccccccccccCccccccc
Confidence 99999999999997766554 44556789999999999955 46789999999 9999999999999999998876
Q ss_pred CCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCHHHHHHHHHHcc
Q 043823 348 DINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSVEQLKEDIDAFF 427 (454)
Q Consensus 348 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~enl~a~~ 427 (454)
.....+....+. ......+.+.++++++|+|++|+||+|+++++.+.+||+|+++++|+++|+++++
T Consensus 201 ~~~~~~~~~~~~-------------~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~ 267 (283)
T PF00248_consen 201 SPPPPPSRASLR-------------DAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALD 267 (283)
T ss_dssp TTTTSTTTSGSS-------------THGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSS
T ss_pred cCCCcccccccc-------------hhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhC
Confidence 654311111100 0234456899999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 043823 428 TAERPLPQEVMADVEDIF 445 (454)
Q Consensus 428 ~~~~~L~~e~~~~L~~~~ 445 (454)
+ +|+++++++|++++
T Consensus 268 ~---~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 268 F---PLTEEELAEIDQIL 282 (283)
T ss_dssp S---G--HHHHHHHHTTH
T ss_pred C---CCCHHHHHHHHhhh
Confidence 8 89999999999875
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.4e-52 Score=408.78 Aligned_cols=251 Identities=26% Similarity=0.357 Sum_probs=219.2
Q ss_pred ccCceeeccccCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhc--CCCCcEEEEeeccC
Q 043823 109 VISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKS--QPRDKVIIATKVSG 186 (454)
Q Consensus 109 ~Vs~lglGt~~~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~--~~R~~v~I~TK~~~ 186 (454)
+||.||||||+++ .+++.+++++|++.||||||||+.|| +|+.+|++|+. .+|+++||+||++.
T Consensus 2 ~vs~lglGt~~~~----~~~~~~~i~~A~~~Gi~~~DTA~~Yg----------~E~~lG~al~~~~~~R~~v~i~TK~~~ 67 (267)
T PRK11172 2 SIPAFGLGTFRLK----DQVVIDSVKTALELGYRAIDTAQIYD----------NEAAVGQAIAESGVPRDELFITTKIWI 67 (267)
T ss_pred CCCCEeeEccccC----hHHHHHHHHHHHHcCCCEEEccchhC----------CHHHHHHHHHHcCCChhHeEEEEEeCC
Confidence 6899999999875 36789999999999999999999997 69999999984 46999999999853
Q ss_pred CCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHH
Q 043823 187 YSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELI 266 (454)
Q Consensus 187 ~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~ 266 (454)
. +.+++.+++++++||+|||+||||+|++|||+.. ...+.+++|++|++|+
T Consensus 68 ~--------------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~---------------~~~~~~~~~~~l~~l~ 118 (267)
T PRK11172 68 D--------------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPN---------------DEVSVEEFMQALLEAK 118 (267)
T ss_pred C--------------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC---------------CCCCHHHHHHHHHHHH
Confidence 2 2378999999999999999999999999998620 1246789999999999
Q ss_pred HcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCCcCCCcc
Q 043823 267 DEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKY 346 (454)
Q Consensus 267 ~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~~ 346 (454)
++||||+||||||+.+++.++++.+ +...++++|++||++++ ..+++++|+ ++||+|++|+||++|.+...
T Consensus 119 ~~Gkir~iGvSn~~~~~l~~~~~~~---~~~~~~~~Q~~~~~~~~---~~~ll~~~~--~~gi~v~a~spl~~G~~~~~- 189 (267)
T PRK11172 119 KQGLTREIGISNFTIALMKQAIAAV---GAENIATNQIELSPYLQ---NRKVVAFAK--EHGIHVTSYMTLAYGKVLKD- 189 (267)
T ss_pred HCCCCCEEEEccCCHHHHHHHHHhc---CCCCCeEEeeecCCCCC---cHHHHHHHH--HCCCEEEEECCCCCCcccCC-
Confidence 9999999999999998887776543 33368999999999987 358999999 99999999999999854210
Q ss_pred CCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCHHHHHHHHHHc
Q 043823 347 LDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSVEQLKEDIDAF 426 (454)
Q Consensus 347 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~enl~a~ 426 (454)
..++++|+++|+|++|+||+|+++++. ++|+|+++++|+++|++++
T Consensus 190 --------------------------------~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~ 235 (267)
T PRK11172 190 --------------------------------PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQ 235 (267)
T ss_pred --------------------------------HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhc
Confidence 258899999999999999999999973 5999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHhhc
Q 043823 427 FTAERPLPQEVMADVEDIFKRY 448 (454)
Q Consensus 427 ~~~~~~L~~e~~~~L~~~~~~~ 448 (454)
++ +|+++++++|+++..+.
T Consensus 236 ~~---~L~~~~~~~i~~~~~~~ 254 (267)
T PRK11172 236 DL---QLDAEDMAAIAALDRNG 254 (267)
T ss_pred CC---CcCHHHHHHHhhhccCC
Confidence 98 89999999999998654
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.7e-52 Score=401.30 Aligned_cols=276 Identities=29% Similarity=0.419 Sum_probs=231.2
Q ss_pred ccccCCCCcccCceeeccccCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhh------cC
Q 043823 100 YRKLGDSDLVISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLK------SQ 173 (454)
Q Consensus 100 ~r~Lg~tgl~Vs~lglGt~~~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~------~~ 173 (454)
+.+| ++|.++|.||||||. .+..++.++++.|++.|+||||||..|| +|.-+|++|+ ++
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~----~~~~~~~~aV~~Al~~GYRHIDtA~~Y~----------NE~evG~aik~~i~~~~v 70 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQ----SPPGQVAEAVKAAIKAGYRHIDTAHVYG----------NEKEVGEAIKELLAEGGV 70 (300)
T ss_pred eEec-cCCCccceeeeEecc----cChhhHHHHHHHHHHhCcceeechhhhC----------ChHHHHHHHHHHhhhCCc
Confidence 4566 569999999999997 3568899999999999999999999998 8999999998 35
Q ss_pred CCCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCC-CC
Q 043823 174 PRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWR-PS 252 (454)
Q Consensus 174 ~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~-~~ 252 (454)
+|+++||+||+|.... .++.++.+|++||++||+||+|||++|||-.+.+..... +..++. ..
T Consensus 71 ~RediFiTSKlw~~~~--------------~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~--~~~~~~~~~ 134 (300)
T KOG1577|consen 71 KREDIFITSKLWPTDH--------------APELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKD--ENGKVNYDD 134 (300)
T ss_pred chhhheeeeccCcccc--------------ChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcc--ccccccccc
Confidence 7999999999987533 789999999999999999999999999997642200000 001111 23
Q ss_pred CCHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEE
Q 043823 253 VPIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLL 332 (454)
Q Consensus 253 ~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~vi 332 (454)
.+..++|++|++++++|+||+||||||+..++++++..++ ..+.++|+++++.-+ +.+++++|+ ++||.|.
T Consensus 135 ~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~k----i~P~vnQvE~HP~~~---Q~~L~~fCk--~~~I~v~ 205 (300)
T KOG1577|consen 135 VDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAK----IKPAVNQVECHPYLQ---QKKLVEFCK--SKGIVVT 205 (300)
T ss_pred chHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCC----CCCccceeeccCCcC---hHHHHHHHh--hCCcEEE
Confidence 5689999999999999999999999999999999998884 479999999887544 678999999 9999999
Q ss_pred ecccccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeec
Q 043823 333 AYSPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIG 412 (454)
Q Consensus 333 a~spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G 412 (454)
|||||+++-- +. . .++ -+.+.+||++|+.||+||+|||.++++. +|||.
T Consensus 206 AYSpLg~~~~-~~-----~-------------ll~----------~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipK 254 (300)
T KOG1577|consen 206 AYSPLGSPGR-GS-----D-------------LLE----------DPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPK 254 (300)
T ss_pred EecCCCCCCC-cc-----c-------------ccc----------CHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEec
Confidence 9999998732 00 0 000 1379999999999999999999999994 59999
Q ss_pred CCCHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcC
Q 043823 413 ATSVEQLKEDIDAFFTAERPLPQEVMADVEDIFKRYR 449 (454)
Q Consensus 413 ~~~~~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~~~ 449 (454)
+.|+++|+||++++++ .|+++||+.|+......|
T Consensus 255 S~~~~Ri~eN~~vfdf---~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 255 SSNPERIKENFKVFDF---ELTEEDMKKLDSLNSNER 288 (300)
T ss_pred cCCHHHHHHHHhhccc---cCCHHHHHHHhhccccce
Confidence 9999999999999999 999999999997665543
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6.7e-52 Score=408.31 Aligned_cols=276 Identities=21% Similarity=0.234 Sum_probs=225.3
Q ss_pred CcccCceeeccccCCC----------CCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCC
Q 043823 107 DLVISEITLGTMTFGE----------QNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRD 176 (454)
Q Consensus 107 gl~Vs~lglGt~~~g~----------~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~ 176 (454)
+++||+||||||+||. ..+++++.++|+.|+++||||||||+.|| .||+++|++|+...++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG---------~SE~~lG~al~~~~~~ 72 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFG---------RAETVLGQLIPRPVPF 72 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhh---------hHHHHHhhhhccCCce
Confidence 5789999999999984 34789999999999999999999999995 5999999999853356
Q ss_pred cEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCH-
Q 043823 177 KVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPI- 255 (454)
Q Consensus 177 ~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~- 255 (454)
+++|+||.. +.+++.+++++++||+|||+||||+||+|+|+.. ..+.
T Consensus 73 ~~~i~tk~~----------------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~----------------~~~~~ 120 (292)
T PRK14863 73 RVTLSTVRA----------------DRGPDFVEAEARASLRRMGVERADAILVHSPTEL----------------FGPHG 120 (292)
T ss_pred Eeecccccc----------------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhh----------------cCcch
Confidence 799999842 1267999999999999999999999999998731 1222
Q ss_pred HHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecc
Q 043823 256 VEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYS 335 (454)
Q Consensus 256 ~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~s 335 (454)
+++|++|++|+++||||+||||||+.+++.++.. . ..++++|++||++++.....+++++|+ ++||++++|+
T Consensus 121 ~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~---~---~~~~~~Q~~~n~l~~~~~~~~~l~~~~--~~gi~v~a~s 192 (292)
T PRK14863 121 AALWERLQALKDQGLFAKIGVSAHASDDPVGVAR---R---FKPDILQAPASLLDQRLLADGSLQRIA--GMGVEVHLRS 192 (292)
T ss_pred HHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHh---c---CCCCEEEecCCcccccccccchHHHHH--hCCCEEEEec
Confidence 5789999999999999999999999877655432 1 268999999999998433357999999 9999999999
Q ss_pred cccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCC
Q 043823 336 PLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATS 415 (454)
Q Consensus 336 pL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~ 415 (454)
||++|+|++..... +... ......+..+.++++++++|++|+||+|++++|.|+++|+|+++
T Consensus 193 pl~~G~L~~~~~~~-------------~~~~-----~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~ 254 (292)
T PRK14863 193 IFLNGLLFLPPDRV-------------PAQL-----KGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNS 254 (292)
T ss_pred hhhCccccCCcccC-------------ccch-----hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCC
Confidence 99999997521100 0000 11234456788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcCCCC
Q 043823 416 VEQLKEDIDAFFTAERPLPQEVMADVEDIFKRYRDPT 452 (454)
Q Consensus 416 ~~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~~~~~~ 452 (454)
++|+++|+++.+. +++++.+++|..=...+-+|.
T Consensus 255 ~~ql~~n~~a~~~---~~~~~~~~~l~~~~~~~~~~~ 288 (292)
T PRK14863 255 AAELSAVVAAASS---PPPDLDWDDMAIDDPVALDPR 288 (292)
T ss_pred HHHHHHHHHHHhc---CCCccchhhccCChhhccCcc
Confidence 9999999999987 799888887765444555554
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=9.5e-51 Score=397.26 Aligned_cols=256 Identities=25% Similarity=0.370 Sum_probs=219.5
Q ss_pred cccCCCCcccCceeeccccCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhc--CCCCcE
Q 043823 101 RKLGDSDLVISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKS--QPRDKV 178 (454)
Q Consensus 101 r~Lg~tgl~Vs~lglGt~~~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~--~~R~~v 178 (454)
..| ++|++||.||||||++ +.+++.++|++|++.||||||||+.|| +|+.+|+||+. .+|+++
T Consensus 7 ~~l-~~g~~v~~lglG~~~~----~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----------~E~~lG~al~~~~~~R~~~ 71 (275)
T PRK11565 7 IKL-QDGNVMPQLGLGVWQA----SNEEVITAIHKALEVGYRSIDTAAIYK----------NEEGVGKALKEASVAREEL 71 (275)
T ss_pred EEc-CCCCccCCcceECccC----CHHHHHHHHHHHHHhCCCEEEchhhhC----------CHHHHHHHHHHcCCCHHHE
Confidence 446 5799999999999976 357899999999999999999999997 79999999985 359999
Q ss_pred EEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHH
Q 043823 179 IIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQ 258 (454)
Q Consensus 179 ~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~ 258 (454)
+|+||++.. +++.+++++++||+|||+||||+|++|+|+. ......++
T Consensus 72 ~i~tK~~~~----------------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~----------------~~~~~~~~ 119 (275)
T PRK11565 72 FITTKLWND----------------DHKRPREALEESLKKLQLDYVDLYLMHWPVP----------------AIDHYVEA 119 (275)
T ss_pred EEEEEecCc----------------chHHHHHHHHHHHHHhCCCceEEEEecCCCC----------------CcCcHHHH
Confidence 999998521 4689999999999999999999999999973 11235799
Q ss_pred HHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEeccccc
Q 043823 259 LRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLG 338 (454)
Q Consensus 259 ~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~ 338 (454)
|++|++|+++|+||+||||||+.+++.++... .+. .+.++|++|+++.+ +.+++++|+ ++||++++|+||+
T Consensus 120 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~v-~~~~~Q~~~~~~~~---~~~~~~~~~--~~~i~~~a~spl~ 190 (275)
T PRK11565 120 WKGMIELQKEGLIKSIGVCNFQIHHLQRLIDE---TGV-TPVINQIELHPLMQ---QRQLHAWNA--THKIQTESWSPLA 190 (275)
T ss_pred HHHHHHHHHcCCeeEEeeccCCHHHHHHHHHh---CCC-CceeeeeecCCccc---hHHHHHHHH--HCCCEEEEEccCC
Confidence 99999999999999999999999888776543 232 47889999998886 357999999 9999999999999
Q ss_pred CCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCHHH
Q 043823 339 GGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSVEQ 418 (454)
Q Consensus 339 ~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~~~ 418 (454)
+|.. + . +. .+.|.++|+++|+|++|+||+|+++++. ++|||+++++|
T Consensus 191 ~G~~-~------~----------~~--------------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~ 237 (275)
T PRK11565 191 QGGK-G------V----------FD--------------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSR 237 (275)
T ss_pred CCCc-c------c----------cc--------------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHH
Confidence 7731 0 0 00 1368899999999999999999999974 49999999999
Q ss_pred HHHHHHHcccCCCCCCHHHHHHHHHHHhhc
Q 043823 419 LKEDIDAFFTAERPLPQEVMADVEDIFKRY 448 (454)
Q Consensus 419 l~enl~a~~~~~~~L~~e~~~~L~~~~~~~ 448 (454)
+++|++++++ +|+++++++|+.+...+
T Consensus 238 i~~n~~a~~~---~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 238 IAENFDVFDF---RLDKDELGEIAKLDQGK 264 (275)
T ss_pred HHHHHhccCC---CcCHHHHHHHHhhcccC
Confidence 9999999998 89999999999998654
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=8.4e-51 Score=373.57 Aligned_cols=288 Identities=27% Similarity=0.338 Sum_probs=249.6
Q ss_pred CcccccCCCCcccCceeeccccCCC-CCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCC--
Q 043823 98 MQYRKLGDSDLVISEITLGTMTFGE-QNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQP-- 174 (454)
Q Consensus 98 m~~r~Lg~tgl~Vs~lglGt~~~g~-~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~-- 174 (454)
|++.+|++.|+++|+|.+|+|++.+ ....++..+.|+.|+|.|||+||-|+.|| ++++|+++|.+|+..|
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYG-------gy~cE~~fg~aL~l~p~l 73 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYG-------GYQCEALFGEALKLAPGL 73 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcC-------CccHHHHHHHHHhcChhh
Confidence 7788999999999999999999865 34567899999999999999999999999 8999999999998655
Q ss_pred CCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCC
Q 043823 175 RDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVP 254 (454)
Q Consensus 175 R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~ 254 (454)
|+++.|+||++.... +...+....+++|.++|.+++|+||+||+|||+|+++||+|| +..+
T Consensus 74 RekieivsKCGI~~~--s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPD-----------------pLmd 134 (298)
T COG4989 74 REKIEIVSKCGIRLP--SREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPD-----------------PLMD 134 (298)
T ss_pred hhheEeeeccccccc--cccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCc-----------------ccCC
Confidence 999999999875432 111122335789999999999999999999999999999999 5677
Q ss_pred HHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEec
Q 043823 255 IVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAY 334 (454)
Q Consensus 255 ~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~ 334 (454)
.+|+.+||..|++.|||||+|||||++.+.+-+..+... .++++|++.|+++.....++.+++|+ .+.|.++||
T Consensus 135 ~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~----~LvtNQlelS~~~~~~~~DGtLd~~q--~~~v~pmaW 208 (298)
T COG4989 135 AEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPF----TLVTNQLELSPLHTPMLLDGTLDYCQ--QLRVRPMAW 208 (298)
T ss_pred HHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccc----hhhhcceeeccccccccccchHHHHH--HcCCCcccc
Confidence 899999999999999999999999999988665555432 58999999999998778889999999 999999999
Q ss_pred ccccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhcCCCCeEEeecC
Q 043823 335 SPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHG-LTPVQLALGFVRDRPFMTSSIIGA 413 (454)
Q Consensus 335 spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g-~s~aqvaL~w~L~~~~v~~vI~G~ 413 (454)
|||++|.+.. .+. ...+....|..+|+++| +|..+||++|++.+|.-..||+|+
T Consensus 209 Spl~gG~~F~---g~~----------------------~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt 263 (298)
T COG4989 209 SPLGGGGLFL---GDD----------------------KFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGT 263 (298)
T ss_pred cccCCCcccc---CCc----------------------chHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecC
Confidence 9999984421 111 12344568999999999 799999999999999988899999
Q ss_pred CCHHHHHHHHHHcccCCCCCCHHHHHHHHHHH
Q 043823 414 TSVEQLKEDIDAFFTAERPLPQEVMADVEDIF 445 (454)
Q Consensus 414 ~~~~~l~enl~a~~~~~~~L~~e~~~~L~~~~ 445 (454)
.|+++|++.+++++. .|+.+++=+|-.+.
T Consensus 264 ~~~eRi~~a~~Al~~---~LtRqqWf~Iy~Aa 292 (298)
T COG4989 264 GNLERIRAAIKALSL---TLTRQQWFEIYTAA 292 (298)
T ss_pred CCHHHHHHHHHHhhc---cccHHHHHHHHHHh
Confidence 999999999999999 89999998887665
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.9e-48 Score=373.97 Aligned_cols=281 Identities=26% Similarity=0.409 Sum_probs=236.0
Q ss_pred CcccccCCCCcccCceeeccccCCC----CCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcC
Q 043823 98 MQYRKLGDSDLVISEITLGTMTFGE----QNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ 173 (454)
Q Consensus 98 m~~r~Lg~tgl~Vs~lglGt~~~g~----~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~ 173 (454)
|.||++|+||.++|.||||||++.- ..|++.+.++|++|+++||||||||+.|. .|.||..+|+||++.
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh-------~g~sE~~lgkaL~~~ 73 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYH-------GGESEEFLGKALKDG 73 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeeccccc-------CCCchHHHHHHhhhc
Confidence 8899999999999999999998743 35889999999999999999999999997 688999999999988
Q ss_pred CCCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCC
Q 043823 174 PRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSV 253 (454)
Q Consensus 174 ~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~ 253 (454)
.|++|+++||+..+.. -+.+++++-++++|++||+||+|+|+||..+. +.|+...
T Consensus 74 ~Rekv~LaTKlp~~~~-------------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~------------e~~~k~~ 128 (391)
T COG1453 74 YREKVKLATKLPSWPV-------------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNT------------ETWEKIE 128 (391)
T ss_pred ccceEEEEeecCCccc-------------cCHHHHHHHHHHHHHHhCCchhhhhhhccccH------------HHHHHHH
Confidence 8999999999965432 17899999999999999999999999999873 3343223
Q ss_pred CHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccch-hhhHhhhcccCCCeeEE
Q 043823 254 PIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFE-VDLVEVCHPKNCNIGLL 332 (454)
Q Consensus 254 ~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~-~~ll~~c~~~~~gi~vi 332 (454)
.. .+++.+++++++|+||++|+|.|+...+ +.++... .+++++|++||.++..... .+.+++|. ++|++|+
T Consensus 129 ~~-g~~df~~kak~eGkIr~~GFSfHgs~e~--~~~iv~a---~~~dfvqlq~ny~d~~n~~~~~~l~~A~--~~~~gI~ 200 (391)
T COG1453 129 RL-GVFDFLEKAKAEGKIRNAGFSFHGSTEV--FKEIVDA---YPWDFVQLQYNYIDQKNQAGTEGLKYAA--SKGLGIF 200 (391)
T ss_pred cc-ChHHHHHHHHhcCcEEEeeecCCCCHHH--HHHHHhc---CCcceEEeeeeeeccchhcccHHHHHHH--hCCCcEE
Confidence 33 3799999999999999999999986332 2233222 2599999999999983221 37899999 9999999
Q ss_pred ecccccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcCCCCeEEe
Q 043823 333 AYSPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHG--LTPVQLALGFVRDRPFMTSSI 410 (454)
Q Consensus 333 a~spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~aqvaL~w~L~~~~v~~vI 410 (454)
.++|+.+|-|..+ .| +++.+|+++++ .||++.|++|++++|.|++++
T Consensus 201 IMeP~~gG~l~~~----------------vP---------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vl 249 (391)
T COG1453 201 IMEPLDGGGLLYN----------------VP---------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVL 249 (391)
T ss_pred EEeeCCCCCcccC----------------CC---------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEe
Confidence 9999999976531 11 26788888886 699999999999999999999
Q ss_pred ecCCCHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcC
Q 043823 411 IGATSVEQLKEDIDAFFTAERPLPQEVMADVEDIFKRYR 449 (454)
Q Consensus 411 ~G~~~~~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~~~ 449 (454)
+|+++++|++||++.++...+.|+++|++.|+++.+.++
T Consensus 250 sGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~ 288 (391)
T COG1453 250 SGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYR 288 (391)
T ss_pred cCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHH
Confidence 999999999999999987532599999999998877654
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3e-46 Score=345.70 Aligned_cols=304 Identities=28% Similarity=0.421 Sum_probs=246.0
Q ss_pred hhhccCcccccCCCCcccCceeeccccCCCC---CCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHH
Q 043823 93 AEKNAMQYRKLGDSDLVISEITLGTMTFGEQ---NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASW 169 (454)
Q Consensus 93 ~~~~~m~~r~Lg~tgl~Vs~lglGt~~~g~~---~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~a 169 (454)
.....|+||.||+||++||+||||+..+|.. .+.++....|..|+.+|||+|||++.|| .+.||..+|.+
T Consensus 17 ~~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Yg-------qs~se~~lg~a 89 (342)
T KOG1576|consen 17 EKVRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYG-------QSRSEEGLGLA 89 (342)
T ss_pred HHHHHHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccC-------cchhHHHHHHH
Confidence 3445699999999999999999999865542 4678888888889999999999999999 89999999999
Q ss_pred hhcCCCCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCC
Q 043823 170 LKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKW 249 (454)
Q Consensus 170 L~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~ 249 (454)
+++.||+.+||+||++.+.- +..+.++++++.+++++++||+||++||+|++|+|..+....
T Consensus 90 l~~vPR~aYyIaTKvgRy~l------d~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~------------ 151 (342)
T KOG1576|consen 90 LKDVPREAYYIATKVGRYEL------DYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPN------------ 151 (342)
T ss_pred HhhCChhheeeeeeeeeccc------CccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccccc------------
Confidence 99999999999999986532 334568999999999999999999999999999999874110
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEe--ccccccccccchhhhHhhhcccCC
Q 043823 250 RPSVPIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQ--NSYSLLVRCRFEVDLVEVCHPKNC 327 (454)
Q Consensus 250 ~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ--~~ynll~~~~~~~~ll~~c~~~~~ 327 (454)
.+..+-|++.+|++|+++||||+|||+.++.+-+.++ .+.+...++++- ++|++.+.. --..++..+ ..
T Consensus 152 -ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~----ae~~~G~~dvvlsY~ry~l~d~t--Ll~~~~~~~--sk 222 (342)
T KOG1576|consen 152 -LDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTEC----AERGKGRLDVVLSYCRYTLNDNT--LLRYLKRLK--SK 222 (342)
T ss_pred -ccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHH----HhcCCCceeeehhhhhhccccHH--HHHHHHHHH--hc
Confidence 2345789999999999999999999999997655443 355555677777 788877762 235566777 89
Q ss_pred CeeEEecccccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCe
Q 043823 328 NIGLLAYSPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMT 407 (454)
Q Consensus 328 gi~via~spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~ 407 (454)
|++|+.-++++.|+|+..-.+ .|+|. ..+..+...+-.++|++.|+..+.+|+.|.++.+++.
T Consensus 223 ~vgVi~AsalsmgLLt~~gp~-----------~wHPa------S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~ 285 (342)
T KOG1576|consen 223 GVGVINASALSMGLLTNQGPP-----------PWHPA------SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVS 285 (342)
T ss_pred CceEEehhhHHHHHhhcCCCC-----------CCCCC------CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcc
Confidence 999999999999999864222 23332 2345566677889999999999999999999999999
Q ss_pred EEeecCCCHHHHHHHHHHcccCCCCCCH----HHHHHHHHHHhhcCC
Q 043823 408 SSIIGATSVEQLKEDIDAFFTAERPLPQ----EVMADVEDIFKRYRD 450 (454)
Q Consensus 408 ~vI~G~~~~~~l~enl~a~~~~~~~L~~----e~~~~L~~~~~~~~~ 450 (454)
++++|+++.++++.|+++-.. .|+. +.+..+++.++..++
T Consensus 286 ~~lvGm~s~~~l~~nLdan~~---~ls~~~~Qevl~~~r~~~~~~kn 329 (342)
T KOG1576|consen 286 TVLVGMSSRQLLRINLDANFD---RLSSKHEQEVLRILREILKETKN 329 (342)
T ss_pred eEEecCchHHHHHHHHHhhhc---cccchhHHHHHHHHHHHhhhhcc
Confidence 999999999999999996544 5766 334455555554443
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00065 Score=63.52 Aligned_cols=73 Identities=27% Similarity=0.330 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEec
Q 043823 255 IVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAY 334 (454)
Q Consensus 255 ~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~ 334 (454)
+.+.|..|++++.+|+|..||||.|+..++++++..+.. .+.++|+. +-..|....++..+|. .|+|.+...
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqV----vP~snqVn--L~~cCvvPpdLqafa~--~hdiQLltH 226 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQV----VPESNQVN--LGQCCVVPPDLQAFAD--RHDIQLLTH 226 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhcc----ccccceee--ccccccCCHHHHHHhh--hcceeeeec
Confidence 566899999999999999999999999999999988865 46777754 4455556789999999 999998875
Q ss_pred c
Q 043823 335 S 335 (454)
Q Consensus 335 s 335 (454)
+
T Consensus 227 s 227 (285)
T KOG3023|consen 227 S 227 (285)
T ss_pred C
Confidence 3
No 19
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=69.22 E-value=99 Score=29.06 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECC-CCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCccccccccccc
Q 043823 123 QNTEKESHEILSYAFENGINILDSS-EAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVL 201 (454)
Q Consensus 123 ~~~~~~a~~~l~~Ale~Gin~fDTA-~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~ 201 (454)
..+.++..++++...+.||..|+.. +..+ -...+.+.+..+..+...+...+.
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~------------------ 63 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFPFAS--------EDDFEQVRRLREALPNARLQALCR------------------ 63 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHCTSS--------HHHHHHHHHHHHHHHSSEEEEEEE------------------
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEcccccC--------HHHHHHhhhhhhhhcccccceeee------------------
Confidence 4567888999999999999999999 3332 112344555444333323322222
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEee---CC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGV---SN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGv---Sn 278 (454)
...+.++..++.. ...|.+.+.++.-=++-......+ +.....++.+.+.++.+++.|....+++ +.
T Consensus 64 -~~~~~i~~~~~~~-~~~g~~~i~i~~~~s~~~~~~~~~--------~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~ 133 (237)
T PF00682_consen 64 -ANEEDIERAVEAA-KEAGIDIIRIFISVSDLHIRKNLN--------KSREEALERIEEAVKYAKELGYEVAFGCEDASR 133 (237)
T ss_dssp -SCHHHHHHHHHHH-HHTTSSEEEEEEETSHHHHHHHTC--------SHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGG
T ss_pred -ehHHHHHHHHHhh-HhccCCEEEecCcccHHHHHHhhc--------CCHHHHHHHHHHHHHHHHhcCCceEeCcccccc
Confidence 1456677766533 567888877664333211000000 0001124455666777778898888887 44
Q ss_pred CChhHHHHHHHHHHHcCC
Q 043823 279 ETSYGVMEFVHAAEVEGL 296 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~ 296 (454)
++.+.+.++.+.+...|.
T Consensus 134 ~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGA 151 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-
T ss_pred ccHHHHHHHHHHHHHcCC
Confidence 556666666666666553
No 20
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=67.84 E-value=1.4e+02 Score=30.09 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEECC
Q 043823 120 FGEQNTEKESHEILSYAFENGINILDSS 147 (454)
Q Consensus 120 ~g~~~~~~~a~~~l~~Ale~Gin~fDTA 147 (454)
++...+.++..++++...++||..|+.+
T Consensus 18 ~~~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 18 VRHQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCccCHHHHHHHHHHHHHcCCCEEEee
Confidence 3445677899999999999999999995
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.25 E-value=86 Score=31.02 Aligned_cols=156 Identities=9% Similarity=0.002 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCCC
Q 043823 125 TEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVD 204 (454)
Q Consensus 125 ~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s 204 (454)
+.++..+.++.+.+.|++.|+.-- |.. .....+.+....+..+ ++-|.-+.... ++
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~-----~~~d~~~v~~lr~~~g--~~~l~vD~n~~---------------~~ 189 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGD-----LEDDIERIRAIREAAP--DARLRVDANQG---------------WT 189 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCC-----hhhHHHHHHHHHHhCC--CCeEEEeCCCC---------------cC
Confidence 557777888889999999998753 310 1112233333333333 66677776421 24
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccE-EeeCCCChhH
Q 043823 205 AANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRY-IGVSNETSYG 283 (454)
Q Consensus 205 ~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~-iGvSn~~~~~ 283 (454)
.+.. ..+-+.|+.++ +.++-.|-. .+-++.+.+|++...|.- .|=+-++.++
T Consensus 190 ~~~A-~~~~~~l~~~~-----l~~iEeP~~---------------------~~d~~~~~~L~~~~~ipIa~~E~~~~~~~ 242 (316)
T cd03319 190 PEEA-VELLRELAELG-----VELIEQPVP---------------------AGDDDGLAYLRDKSPLPIMADESCFSAAD 242 (316)
T ss_pred HHHH-HHHHHHHHhcC-----CCEEECCCC---------------------CCCHHHHHHHHhcCCCCEEEeCCCCCHHH
Confidence 3332 23334455544 444444320 122567778888876663 3445555555
Q ss_pred HHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccC
Q 043823 284 VMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGG 339 (454)
Q Consensus 284 l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~ 339 (454)
+.++++. ..++.+|..-+.+---..-..+..+|+ ++|+.++..+-+..
T Consensus 243 ~~~~~~~------~~~d~v~~~~~~~GGi~~~~~~~~~a~--~~gi~~~~~~~~~~ 290 (316)
T cd03319 243 AARLAGG------GAYDGINIKLMKTGGLTEALRIADLAR--AAGLKVMVGCMVES 290 (316)
T ss_pred HHHHHhc------CCCCEEEEeccccCCHHHHHHHHHHHH--HcCCCEEEECchhh
Confidence 4444332 247778876443211011256788999 99999988644433
No 22
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=63.29 E-value=32 Score=35.45 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCCCHH
Q 043823 127 KESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAA 206 (454)
Q Consensus 127 ~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~ 206 (454)
.....++++|++.|++++|||..+. .+..+....+ +..+.+..-+| ..+ .++--
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~----------~~~~~~~~a~---~Agit~v~~~G-~dP------------Gi~nv 132 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE----------PPWKLDEEAK---KAGITAVLGCG-FDP------------GITNV 132 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc----------hhhhhhHHHH---HcCeEEEcccC-cCc------------chHHH
Confidence 4455899999999999999997774 2222222221 33455555543 211 22322
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEeCCch
Q 043823 207 NIKESVEKSLKRLNTDYIDLLQIHWPDR 234 (454)
Q Consensus 207 ~i~~~le~SL~rLg~d~iDl~~lH~pd~ 234 (454)
....++++--+ .+++||+|..+-|+.
T Consensus 133 ~a~~a~~~~~~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 133 LAAYAAKELFD--EIESIDIYVGGLGEH 158 (389)
T ss_pred HHHHHHHHhhc--cccEEEEEEecCCCC
Confidence 23333332222 689999999999874
No 23
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=59.98 E-value=47 Score=31.70 Aligned_cols=115 Identities=20% Similarity=0.201 Sum_probs=64.2
Q ss_pred CceeeccccCCCCCCHHHHHHHHHHHHH-cCCCEEECCCCCCCCCCCCCCC-chHHHHHHHhhcCCCCcEEEEeeccCCC
Q 043823 111 SEITLGTMTFGEQNTEKESHEILSYAFE-NGINILDSSEAYPIPMKKETQG-KTDLYIASWLKSQPRDKVIIATKVSGYS 188 (454)
Q Consensus 111 s~lglGt~~~g~~~~~~~a~~~l~~Ale-~Gin~fDTA~~Yg~~~~~~~~G-~sE~~lG~aL~~~~R~~v~I~TK~~~~~ 188 (454)
|+|-+||..|.+ . +++..|++ +|-..+=.|----+. .+ ..+. ..+.-++++++.+.--..+
T Consensus 9 SRL~lGTgky~s---~----~~m~~ai~aSg~evvTvalRR~~~-----~~~~~~~---~~~~~i~~~~~~lLPNTaG-- 71 (247)
T PF05690_consen 9 SRLILGTGKYPS---P----EVMREAIEASGAEVVTVALRRVNL-----GSKPGGD---NILDYIDRSGYTLLPNTAG-- 71 (247)
T ss_dssp -SEEEE-STSSS---H----HHHHHHHHHTT-SEEEEECCGSTT-----TS-TTCH---HCCCCTTCCTSEEEEE-TT--
T ss_pred cceEEecCCCCC---H----HHHHHHHHHhCCcEEEEEEecccC-----CCCCCCc---cHHHHhcccCCEECCcCCC--
Confidence 789999987753 2 45555554 577777666322110 01 0111 2233345566655544322
Q ss_pred CCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc
Q 043823 189 ERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE 268 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~ 268 (454)
+.+.++..+..+-..+-+++++|=|=.+.++... ..+..|+++|-+.|+++
T Consensus 72 -------------c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L----------------~PD~~etl~Aae~Lv~e 122 (247)
T PF05690_consen 72 -------------CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTL----------------LPDPIETLKAAEILVKE 122 (247)
T ss_dssp --------------SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT------------------B-HHHHHHHHHHHHHT
T ss_pred -------------CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc----------------CCChhHHHHHHHHHHHC
Confidence 3377888888888889999999888777665432 23567999999999999
Q ss_pred Ccc
Q 043823 269 GKV 271 (454)
Q Consensus 269 G~I 271 (454)
|-+
T Consensus 123 GF~ 125 (247)
T PF05690_consen 123 GFV 125 (247)
T ss_dssp T-E
T ss_pred CCE
Confidence 863
No 24
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.54 E-value=1.1e+02 Score=29.90 Aligned_cols=32 Identities=22% Similarity=0.027 Sum_probs=21.3
Q ss_pred HHHHHhcCCCC-eEEeecCCCHHHHHHHHHHcc
Q 043823 396 ALGFVRDRPFM-TSSIIGATSVEQLKEDIDAFF 427 (454)
Q Consensus 396 aL~w~L~~~~v-~~vI~G~~~~~~l~enl~a~~ 427 (454)
.++.+.++-.+ .++=.|.++++|+++.+++++
T Consensus 196 ~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~AD 228 (265)
T COG0159 196 LVKRVRKYTDVPVLVGFGISSPEQAAQVAEAAD 228 (265)
T ss_pred HHHHHHHhcCCCeEEecCcCCHHHHHHHHHhCC
Confidence 35555554322 335568899999999988865
No 25
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=57.95 E-value=93 Score=30.08 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=68.2
Q ss_pred HHHHHHcCcccEEee-CCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCC
Q 043823 262 FKELIDEGKVRYIGV-SNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGG 340 (454)
Q Consensus 262 L~~L~~~G~Ir~iGv-Sn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G 340 (454)
|.+-.++|+. -+|+ .......+.| .+...|+ ++.++-.+.+.++.. .-..++..|+ ..|+..+..-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e---~~a~~G~-D~v~iD~EHg~~~~~-~~~~~i~a~~--~~g~~~lVRvp~~~- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTE---VLGLAGF-DWLVLDGEHAPNDVS-TFIPQLMALK--GSASAPVVRVPTNE- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHH---HHHhcCC-CEEEEccccCCCCHH-HHHHHHHHHh--hcCCCcEEECCCCC-
Confidence 5555566875 4554 3334333433 3344454 588888888888763 3356778888 88888888755332
Q ss_pred cCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCHHHHH
Q 043823 341 SLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSVEQLK 420 (454)
Q Consensus 341 ~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~ 420 (454)
...++.+|..+....++|-.++.+|++
T Consensus 81 -----------------------------------------------------~~~i~r~LD~Ga~giivP~v~tae~a~ 107 (256)
T PRK10558 81 -----------------------------------------------------PVIIKRLLDIGFYNFLIPFVETAEEAR 107 (256)
T ss_pred -----------------------------------------------------HHHHHHHhCCCCCeeeecCcCCHHHHH
Confidence 124566777777666888888888888
Q ss_pred HHHHHccc
Q 043823 421 EDIDAFFT 428 (454)
Q Consensus 421 enl~a~~~ 428 (454)
+.+++..+
T Consensus 108 ~~v~a~ky 115 (256)
T PRK10558 108 RAVASTRY 115 (256)
T ss_pred HHHHHcCC
Confidence 88877766
No 26
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=57.89 E-value=1.8e+02 Score=27.92 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCC
Q 043823 124 NTEKESHEILSYAFENGINILDSSE 148 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~ 148 (454)
.+.++..++++...+.||..|+...
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~ 41 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGI 41 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4668888999999999999999973
No 27
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=57.61 E-value=61 Score=30.60 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHcCcccEEeeCC-CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCee
Q 043823 252 SVPIVEQLRAFKELIDEGKVRYIGVSN-ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIG 330 (454)
Q Consensus 252 ~~~~~e~~~aL~~L~~~G~Ir~iGvSn-~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~ 330 (454)
+...++..++|.+|+ +..|..-. .+..|...+.+.|++.|.. .|.++.... +.+++...- +.|..
T Consensus 72 e~eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~-------~~~PLWg~d-~~ell~e~~--~~Gf~ 137 (223)
T COG2102 72 EREVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK-------VYAPLWGRD-PEELLEEMV--EAGFE 137 (223)
T ss_pred hhhHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE-------EeecccCCC-HHHHHHHHH--HcCCe
Confidence 345677778888877 55555432 3456777778888877642 255555533 345555444 56666
Q ss_pred EEecccccCCcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHH
Q 043823 331 LLAYSPLGGGSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPV 393 (454)
Q Consensus 331 via~spL~~G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~a 393 (454)
++.-+.-+.|+-. .+.. .....+..+.+..++++||+.|+
T Consensus 138 ~~Iv~Vsa~gL~~-~~lG----------------------r~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 138 AIIVAVSAEGLDE-SWLG----------------------RRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred EEEEEEeccCCCh-HHhC----------------------CccCHHHHHHHHHHHHhcCCCcc
Confidence 6666666666421 0000 01123556789999999998774
No 28
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=56.81 E-value=1.1e+02 Score=31.69 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=65.3
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCC
Q 043823 201 LRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNET 280 (454)
Q Consensus 201 ~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~ 280 (454)
.+.+++.+.+.+++..+ |-+|.+-+|.- -+.+.++.+++.|+ ..|+-+-+
T Consensus 135 ~~mt~d~~~~~ie~qa~----dGVDfmTiH~G------------------------i~~~~~~~~~~~~R--~~giVSRG 184 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAK----DGVDFMTIHAG------------------------VLLEYVERLKRSGR--ITGIVSRG 184 (423)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc------------------------hhHHHHHHHHhCCC--ccCeecCc
Confidence 46788999988888876 68899999973 23678889999995 56665555
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCCcCCCccCCC
Q 043823 281 SYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYLDI 349 (454)
Q Consensus 281 ~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~~~~~ 349 (454)
..-+. .....++ .-|++.. .-+++++.|+ ++++.+ .|+.|+--|...+.
T Consensus 185 Gs~~~---~WM~~~~---------~ENPlye--~fD~lLeI~~--~yDVtl----SLGDglRPG~i~DA 233 (423)
T TIGR00190 185 GAILA---AWMLHHH---------KENPLYK--NFDYILEIAK--EYDVTL----SLGDGLRPGCIADA 233 (423)
T ss_pred HHHHH---HHHHHcC---------CcCchHH--HHHHHHHHHH--HhCeee----eccCCcCCCccccC
Confidence 43222 2222221 2344443 2357999999 999977 56677665554443
No 29
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=56.62 E-value=40 Score=31.50 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeC-CCChh
Q 043823 204 DAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVS-NETSY 282 (454)
Q Consensus 204 s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvS-n~~~~ 282 (454)
++++++. +..+|.||+-+++...-. ...+.+. ...+.+.. .+.++.+||. |-+.+
T Consensus 10 ~~eda~~-----~~~~GaD~iGfIf~~~Sp-----------------R~V~~~~-a~~i~~~~-~~~~~~VgVf~~~~~~ 65 (207)
T PRK13958 10 TIKDVTA-----ASQLPIDAIGFIHYEKSK-----------------RHQTITQ-IKKLASAV-PNHIDKVCVVVNPDLT 65 (207)
T ss_pred cHHHHHH-----HHHcCCCEEEEecCCCCc-----------------ccCCHHH-HHHHHHhC-CCCCCEEEEEeCCCHH
Confidence 3455544 455999999997544321 1233333 33333322 3568899995 65555
Q ss_pred HHHHHHHHHHHcCCCCEEEEecc
Q 043823 283 GVMEFVHAAEVEGLPKIVSIQNS 305 (454)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~vQ~~ 305 (454)
.+. +.+... .++++|++
T Consensus 66 ~i~---~~~~~~---~~d~vQLH 82 (207)
T PRK13958 66 TIE---HILSNT---SINTIQLH 82 (207)
T ss_pred HHH---HHHHhC---CCCEEEEC
Confidence 444 444332 58999975
No 30
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=55.86 E-value=3.1e+02 Score=30.36 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHhcCCCCeEEeecCCCHHHHHH-HHHHcc
Q 043823 380 KYIEMAKKHGL------TPVQLALGFVRDRPFMTSSIIGATSVEQLKE-DIDAFF 427 (454)
Q Consensus 380 ~l~~ia~~~g~------s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~e-nl~a~~ 427 (454)
+|.++|++.|. ++.++.-.|+-.... ..+..|+|+|+.+-+ .+..+.
T Consensus 223 ~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaStP~~~i~~v~~~l~ 276 (647)
T PRK00087 223 KLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGASTPDWIIEEVIKKMS 276 (647)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccCCCHHHHHHHHHHHH
Confidence 68888988873 788999999877654 679999999997644 444444
No 31
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.88 E-value=1.5e+02 Score=31.54 Aligned_cols=78 Identities=10% Similarity=0.142 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHcCcccEEeeC--C--CChhHHHHHHHHHHHcC-CCCEEEEeccccccccccchhhhHhhhcccC
Q 043823 252 SVPIVEQLRAFKELIDEGKVRYIGVS--N--ETSYGVMEFVHAAEVEG-LPKIVSIQNSYSLLVRCRFEVDLVEVCHPKN 326 (454)
Q Consensus 252 ~~~~~e~~~aL~~L~~~G~Ir~iGvS--n--~~~~~l~~~~~~~~~~~-~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~ 326 (454)
..+++.+++.++.|+++.-|+++-++ | .+...+.++.+.....+ ..-.-..+...+.+.+ .+++++..+ +
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~---d~ell~~l~--~ 295 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR---DADILHLYR--R 295 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC---CHHHHHHHH--H
Confidence 35788999999999987668887764 2 34455666666665544 2211223444333322 357888888 8
Q ss_pred CCeeEEec
Q 043823 327 CNIGLLAY 334 (454)
Q Consensus 327 ~gi~via~ 334 (454)
.|+.-+..
T Consensus 296 aG~~~v~i 303 (497)
T TIGR02026 296 AGLVHISL 303 (497)
T ss_pred hCCcEEEE
Confidence 88766554
No 32
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=53.77 E-value=2.3e+02 Score=27.98 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCc----hHHHHHHHhh-------cCCCCcEEEEeeccCCCCCccc
Q 043823 125 TEKESHEILSYAFENGINILDSSEAYPIPMKKETQGK----TDLYIASWLK-------SQPRDKVIIATKVSGYSERSSF 193 (454)
Q Consensus 125 ~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~----sE~~lG~aL~-------~~~R~~v~I~TK~~~~~~~~~~ 193 (454)
+++...++-+..+++|-+.|.|.....+..+....|. .+++...+++ ...+.+++|+-=++++.. +
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~---~ 120 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGA---Y 120 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCccc---c
Confidence 3455566767789999999998854432211111232 3445444443 112335888888876532 1
Q ss_pred cccccc---ccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc--
Q 043823 194 LRDNAK---VLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE-- 268 (454)
Q Consensus 194 ~~~~~~---~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~-- 268 (454)
..+..+ .+..+.+.+++...+..+.|--..+|++.+--.. .+.|+..+++-+++.
T Consensus 121 l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~--------------------~~~E~~~~~~~~~~~~~ 180 (304)
T PRK09485 121 LADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIP--------------------NLDEAEALVELLKEEFP 180 (304)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccC--------------------CHHHHHHHHHHHHHhcC
Confidence 111110 1246789999999999999966779999998532 356666666666655
Q ss_pred CcccEEeeC
Q 043823 269 GKVRYIGVS 277 (454)
Q Consensus 269 G~Ir~iGvS 277 (454)
++=-.+.++
T Consensus 181 ~~pv~is~~ 189 (304)
T PRK09485 181 GVPAWLSFT 189 (304)
T ss_pred CCcEEEEEE
Confidence 554445443
No 33
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=53.29 E-value=2.4e+02 Score=27.99 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=33.5
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHhcCCCCeEEeecCCCHHHHHHHH
Q 043823 380 KYIEMAKKHGL------TPVQLALGFVRDRPFMTSSIIGATSVEQLKEDI 423 (454)
Q Consensus 380 ~l~~ia~~~g~------s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~enl 423 (454)
+|.++|++++. ++.++-..|+.... ...+..|+|+|+.+-+.+
T Consensus 227 kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 227 RLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 68888888773 78899999997654 457999999999764443
No 34
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=51.80 E-value=1.5e+02 Score=30.82 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=83.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCC
Q 043823 201 LRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNET 280 (454)
Q Consensus 201 ~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~ 280 (454)
.+++++.+...+++..+ |-+|.+-+|.-- +.+.++.++++|+ ..|+-+-+
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcGi------------------------~~~~~~~~~~~~R--~~giVSRG 187 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCGV------------------------TRETLERLKKSGR--IMGIVSRG 187 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccch------------------------hHHHHHHHHhcCC--ccCeecCC
Confidence 46788999998888876 689999999842 3578889999985 56665555
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCCcCCCccCCCCchhhcccccc
Q 043823 281 SYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYLDINSEAARKGRLN 360 (454)
Q Consensus 281 ~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~r~~ 360 (454)
..-+. .....++ .-|++.. .-+++++.|+ ++++.+ .|+.|+-.|...+.....
T Consensus 188 Gs~~~---~WM~~n~---------~ENPlye--~fD~lLeI~~--~yDVtl----SLGDglRPG~i~Da~D~a------- 240 (431)
T PRK13352 188 GSFLA---AWMLHNN---------KENPLYE--HFDYLLEILK--EYDVTL----SLGDGLRPGCIADATDRA------- 240 (431)
T ss_pred HHHHH---HHHHHcC---------CcCchHH--HHHHHHHHHH--HhCeee----eccCCcCCCccccCCcHH-------
Confidence 43222 2222221 2344444 2357999999 999977 567776655544433200
Q ss_pred cCcchhhhhcchHHHHHHHHHHHHHHHcCC----------CHHHHHHHHHhcC
Q 043823 361 LFPGYMERYNTSLAREATIKYIEMAKKHGL----------TPVQLALGFVRDR 403 (454)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~----------s~aqvaL~w~L~~ 403 (454)
++ ..+..+.+|.+-|.+.|+ +..|+..+--+++
T Consensus 241 ---Qi-------~El~~lgeL~~RA~e~gVQvMVEGPGHvPl~~I~~nv~l~K 283 (431)
T PRK13352 241 ---QI-------QELITLGELVKRAREAGVQVMVEGPGHVPLDQIEANVKLQK 283 (431)
T ss_pred ---HH-------HHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 00 012234456666667663 5667666665554
No 35
>PRK13796 GTPase YqeH; Provisional
Probab=50.05 E-value=2.3e+02 Score=28.85 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccc
Q 043823 124 NTEKESHEILSYAFENG---INILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKV 200 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~G---in~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~ 200 (454)
.++++..++++..-+.- +-.+|..+.-+ .-...+.+.+. ...-++|.+|.--...
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~---------s~~~~L~~~~~--~kpviLViNK~DLl~~----------- 111 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNG---------SWIPGLHRFVG--NNPVLLVGNKADLLPK----------- 111 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCC---------chhHHHHHHhC--CCCEEEEEEchhhCCC-----------
Confidence 35677777887776655 45678666443 12334444443 3556899999742211
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCC
Q 043823 201 LRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNET 280 (454)
Q Consensus 201 ~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~ 280 (454)
....+.+.+.++.-.+.+|....|++.+..-. ...++++++.+.++.+.+.+-.+|.+|.+
T Consensus 112 -~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~------------------g~gI~eL~~~I~~~~~~~~v~vvG~~NvG 172 (365)
T PRK13796 112 -SVKKNKVKNWLRQEAKELGLRPVDVVLISAQK------------------GHGIDELLEAIEKYREGRDVYVVGVTNVG 172 (365)
T ss_pred -ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC------------------CCCHHHHHHHHHHhcCCCeEEEEcCCCCc
Confidence 12345666666766777786656777766432 24578888888888778889999999998
Q ss_pred hhHH
Q 043823 281 SYGV 284 (454)
Q Consensus 281 ~~~l 284 (454)
-..+
T Consensus 173 KSTL 176 (365)
T PRK13796 173 KSTL 176 (365)
T ss_pred HHHH
Confidence 6543
No 36
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=49.75 E-value=97 Score=29.74 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHH----hh---------------cCCCCcEEEEeec
Q 043823 124 NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASW----LK---------------SQPRDKVIIATKV 184 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~a----L~---------------~~~R~~v~I~TK~ 184 (454)
.+.++..++.++|-+.||.||=|...-. +=+++-+. +| .....-++|+|-.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~----------s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE----------SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH----------HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH----------HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC
Confidence 4688899999999999999997764331 22222111 00 0123447777764
Q ss_pred cCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHH
Q 043823 185 SGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKE 264 (454)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~ 264 (454)
. +-+.|.++++--.++ ..-|+.++|+...|- ..+.+--+..|..
T Consensus 123 s------------------tl~EI~~Av~~~~~~---~~~~l~llHC~s~YP---------------~~~e~~NL~~i~~ 166 (241)
T PF03102_consen 123 S------------------TLEEIERAVEVLREA---GNEDLVLLHCVSSYP---------------TPPEDVNLRVIPT 166 (241)
T ss_dssp --------------------HHHHHHHHHHHHHH---CT--EEEEEE-SSSS-----------------GGG--TTHHHH
T ss_pred C------------------CHHHHHHHHHHHHhc---CCCCEEEEecCCCCC---------------CChHHcChHHHHH
Confidence 3 456676666655333 367999999987542 1222234777777
Q ss_pred HHHcCcccEEeeCCCChhH
Q 043823 265 LIDEGKVRYIGVSNETSYG 283 (454)
Q Consensus 265 L~~~G~Ir~iGvSn~~~~~ 283 (454)
|++.=- --||+|.|+...
T Consensus 167 L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 167 LKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp HHHHST-SEEEEEE-SSSS
T ss_pred HHHhcC-CCEEeCCCCCCc
Confidence 876522 578999998643
No 37
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=48.35 E-value=75 Score=31.22 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=72.2
Q ss_pred HHHHHcCcccEEeeCCCChhHHHHHHHHHHHcC--CCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCC
Q 043823 263 KELIDEGKVRYIGVSNETSYGVMEFVHAAEVEG--LPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGG 340 (454)
Q Consensus 263 ~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~--~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G 340 (454)
+.|....++-.+-=++.+.+...++.+.++... ..-...+.+.|--.+| ++.+.++++ +-++-++. ||
T Consensus 148 ~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~R---Q~a~~~la~--~vD~miVV-----Gg 217 (280)
T TIGR00216 148 ENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNR---QDAVKELAP--EVDLMIVI-----GG 217 (280)
T ss_pred HhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHH---HHHHHHHHh--hCCEEEEE-----CC
Confidence 333334455555556777777778887776543 1111222222222233 456778887 77776665 33
Q ss_pred cCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCCeEEeecCC
Q 043823 341 SLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGL------TPVQLALGFVRDRPFMTSSIIGAT 414 (454)
Q Consensus 341 ~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~aqvaL~w~L~~~~v~~vI~G~~ 414 (454)
.= .++ ..+|.++|+++|. ++.++-..|+-.... ..+..|+|
T Consensus 218 ~n----SsN----------------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGAS 264 (280)
T TIGR00216 218 KN----SSN----------------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGAS 264 (280)
T ss_pred CC----Cch----------------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCC
Confidence 21 111 1268899998873 788999999987654 67999999
Q ss_pred CHHHHHHHH
Q 043823 415 SVEQLKEDI 423 (454)
Q Consensus 415 ~~~~l~enl 423 (454)
+|+.+-+.+
T Consensus 265 TP~~li~eV 273 (280)
T TIGR00216 265 TPDWIIEEV 273 (280)
T ss_pred CCHHHHHHH
Confidence 999875543
No 38
>PRK00208 thiG thiazole synthase; Reviewed
Probab=48.13 E-value=1.7e+02 Score=28.24 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCCh
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNETS 281 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~ 281 (454)
+.+.++..+..+-..+-+++++|=|=.+.++.. ...++.+++++.++|+++|.+-. =+++-+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~----------------llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~ 134 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKT----------------LLPDPIETLKAAEILVKEGFVVL-PYCTDDP 134 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCC----------------CCcCHHHHHHHHHHHHHCCCEEE-EEeCCCH
Confidence 447777777888888888999998888877653 23567899999999999998654 2344443
No 39
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=46.89 E-value=1.7e+02 Score=28.19 Aligned_cols=104 Identities=12% Similarity=0.024 Sum_probs=65.4
Q ss_pred HHHHHcCcccEEee-CCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCCc
Q 043823 263 KELIDEGKVRYIGV-SNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGS 341 (454)
Q Consensus 263 ~~L~~~G~Ir~iGv-Sn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~ 341 (454)
.+-.++|+. -+|+ ++.....+.+++ ...|+ ++.++-.+.+.++.. .-..++..|+ ..|+..+..-|-..
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~---a~~G~-D~v~iD~EHg~~~~~-~~~~~~~a~~--~~g~~~~VRvp~~~-- 73 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVL---GLAGF-DWLLLDGEHAPNDVL-TFIPQLMALK--GSASAPVVRPPWNE-- 73 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHH---HhcCC-CEEEEecccCCCCHH-HHHHHHHHHh--hcCCCcEEECCCCC--
Confidence 344445764 3443 444444444433 33453 588888888888763 3356777777 78888887655321
Q ss_pred CCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCHHHHHH
Q 043823 342 LTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSVEQLKE 421 (454)
Q Consensus 342 Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~e 421 (454)
...++.+|..+....++|-.++.+++++
T Consensus 74 ----------------------------------------------------~~~i~r~LD~Ga~gIivP~v~taeea~~ 101 (249)
T TIGR03239 74 ----------------------------------------------------PVIIKRLLDIGFYNFLIPFVESAEEAER 101 (249)
T ss_pred ----------------------------------------------------HHHHHHHhcCCCCEEEecCcCCHHHHHH
Confidence 1235666777766668888888888888
Q ss_pred HHHHccc
Q 043823 422 DIDAFFT 428 (454)
Q Consensus 422 nl~a~~~ 428 (454)
.+++..+
T Consensus 102 ~v~a~ky 108 (249)
T TIGR03239 102 AVAATRY 108 (249)
T ss_pred HHHHcCC
Confidence 8877666
No 40
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.81 E-value=2.7e+02 Score=26.73 Aligned_cols=125 Identities=10% Similarity=0.032 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECCCC-------C--CCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCccc
Q 043823 123 QNTEKESHEILSYAFENGINILDSSEA-------Y--PIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSF 193 (454)
Q Consensus 123 ~~~~~~a~~~l~~Ale~Gin~fDTA~~-------Y--g~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~ 193 (454)
..+.++..++++...+.||..++.... | +.+ .-..++.+.+..+..+..++.+..- ...
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-----~~~~~e~i~~~~~~~~~~~~~~~~~-~~~------ 85 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-----AHTDEEYLEAAAEALKQAKLGVLLL-PGI------ 85 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-----CCChHHHHHHHHHhccCCEEEEEec-CCc------
Confidence 456788999999999999999999732 1 110 1124556665555444444432221 001
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccE
Q 043823 194 LRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRY 273 (454)
Q Consensus 194 ~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~ 273 (454)
...+. ++..++ .|+|.|-++.--+ +...+.++++.+++.|+--.
T Consensus 86 ---------~~~~~----i~~a~~-~g~~~iri~~~~s----------------------~~~~~~~~i~~ak~~G~~v~ 129 (263)
T cd07943 86 ---------GTVDD----LKMAAD-LGVDVVRVATHCT----------------------EADVSEQHIGAARKLGMDVV 129 (263)
T ss_pred ---------cCHHH----HHHHHH-cCCCEEEEEechh----------------------hHHHHHHHHHHHHHCCCeEE
Confidence 12333 344433 3666655533111 12456777788888887555
Q ss_pred Eee---CCCChhHHHHHHHHHHHcC
Q 043823 274 IGV---SNETSYGVMEFVHAAEVEG 295 (454)
Q Consensus 274 iGv---Sn~~~~~l~~~~~~~~~~~ 295 (454)
+.+ +.++.+.+.++.+.+...|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~G 154 (263)
T cd07943 130 GFLMMSHMASPEELAEQAKLMESYG 154 (263)
T ss_pred EEEEeccCCCHHHHHHHHHHHHHcC
Confidence 554 3345555666666655554
No 41
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.52 E-value=8.2 Score=35.08 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=17.6
Q ss_pred CceEEecCCcccCCCCCCcC
Q 043823 8 RDFVVIRPPVLSAPSLGLTQ 27 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (454)
-|.+|+.||+|+.+||+-|-
T Consensus 136 fdiivaDPPfL~~eCl~Kts 155 (217)
T KOG3350|consen 136 FDIIVADPPFLSEECLAKTS 155 (217)
T ss_pred ccEEEeCCccccchhhhhhH
Confidence 48899999999999998763
No 42
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.73 E-value=1.8e+02 Score=28.41 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHcCcccEEeeCC-CC---hhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCC
Q 043823 253 VPIVEQLRAFKELIDEGKVRYIGVSN-ET---SYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCN 328 (454)
Q Consensus 253 ~~~~e~~~aL~~L~~~G~Ir~iGvSn-~~---~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~g 328 (454)
...+.+++.++++++++.---|++=. ++ ...++++++.+++.|...+.+.-+++ + ...++.++|+ ++|
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~---e---e~~~~~~~~~--~~g 147 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPP---E---ESDELLKAAE--KHG 147 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCCh---H---HHHHHHHHHH--HcC
Confidence 34678999999999775533344322 22 24577788888888876655544332 1 2356889999 999
Q ss_pred eeEEecccccC-------------CcCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHH-----cCC
Q 043823 329 IGLLAYSPLGG-------------GSLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKK-----HGL 390 (454)
Q Consensus 329 i~via~spL~~-------------G~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~-----~g~ 390 (454)
|.++-..+-.. |++- +. ++ ....+...... ....+.++.++++++. .|+
T Consensus 148 i~~I~lvaPtt~~~rl~~i~~~a~GFiY--~v---------s~-~GvTG~~~~~~-~~~~~~v~~vr~~~~~Pv~vGFGI 214 (265)
T COG0159 148 IDPIFLVAPTTPDERLKKIAEAASGFIY--YV---------SR-MGVTGARNPVS-ADVKELVKRVRKYTDVPVLVGFGI 214 (265)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhCCCcEE--EE---------ec-ccccCCCcccc-hhHHHHHHHHHHhcCCCeEEecCc
Confidence 98876644322 1110 00 00 00001011111 1234556677776643 355
Q ss_pred -CHHHHHHHHHhcCCCCeEEeecCCCHHHHHHHHH
Q 043823 391 -TPVQLALGFVRDRPFMTSSIIGATSVEQLKEDID 424 (454)
Q Consensus 391 -s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~enl~ 424 (454)
++.|++--.-.+ ..||+|+.=.+.++++.+
T Consensus 215 s~~e~~~~v~~~A----DGVIVGSAiV~~i~~~~~ 245 (265)
T COG0159 215 SSPEQAAQVAEAA----DGVIVGSAIVKIIEEGLD 245 (265)
T ss_pred CCHHHHHHHHHhC----CeEEEcHHHHHHHHhccc
Confidence 455654444443 348999998888888764
No 43
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.48 E-value=3.3e+02 Score=27.37 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEECC
Q 043823 121 GEQNTEKESHEILSYAFENGINILDSS 147 (454)
Q Consensus 121 g~~~~~~~a~~~l~~Ale~Gin~fDTA 147 (454)
+...+.++..++++..-++|+..|+..
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 334577888999999999999999995
No 44
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=45.21 E-value=1.2e+02 Score=29.20 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCCh
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNETS 281 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~ 281 (454)
+.+.++..+..+-..+-+++++|=|=.+.++... ..++.+++++.++|+++|.+-. =+++-+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~L----------------lpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~ 134 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTL----------------LPDPIETLKAAEILVKEGFTVL-PYCTDDP 134 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCcccc----------------ccCHHHHHHHHHHHHHCCCEEE-EEeCCCH
Confidence 4477887888888888889999998888876642 2457899999999999998653 2344443
No 45
>PLN02363 phosphoribosylanthranilate isomerase
Probab=45.11 E-value=83 Score=30.50 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeC-CCChh
Q 043823 204 DAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVS-NETSY 282 (454)
Q Consensus 204 s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvS-n~~~~ 282 (454)
++++++.++ ++|.|||-+++...-. ...+. +....+.+......++.+||. |-+.+
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~Sp-----------------R~Vs~-e~a~~I~~~l~~~~~~~VgVfv~~~~~ 112 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSK-----------------RSISL-SVAKEISQVAREGGAKPVGVFVDDDAN 112 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCC-----------------CcCCH-HHHHHHHHhccccCccEEEEEeCCCHH
Confidence 456666554 4899999997543211 11233 333444443333246789985 55554
Q ss_pred HHHHHHHHHHHcCCCCEEEEecc
Q 043823 283 GVMEFVHAAEVEGLPKIVSIQNS 305 (454)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~vQ~~ 305 (454)
.+ .+.++.. .++++|++
T Consensus 113 ~I---~~~~~~~---~ld~VQLH 129 (256)
T PLN02363 113 TI---LRAADSS---DLELVQLH 129 (256)
T ss_pred HH---HHHHHhc---CCCEEEEC
Confidence 44 4444432 58899975
No 46
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=45.07 E-value=2.1e+02 Score=27.92 Aligned_cols=107 Identities=17% Similarity=0.017 Sum_probs=67.7
Q ss_pred HHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCCc
Q 043823 262 FKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGS 341 (454)
Q Consensus 262 L~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~ 341 (454)
|.+..++|+.-.-.........+.++ +...|+ ++.++-.+++.++.. .-..++..|+ ..|+..+..-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~---~a~~Gf-D~v~iD~EHg~~~~~-~l~~~i~a~~--~~g~~~lVRvp~~~-- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEI---AATSGY-DWLLIDGEHAPNTIQ-DLYHQLQAIA--PYASQPVIRPVEGS-- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHH---HHHcCC-CEEEEccccCCCCHH-HHHHHHHHHH--hcCCCeEEECCCCC--
Confidence 45555667754333344444444443 334453 577788888888773 3345777777 78887777655221
Q ss_pred CCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCHHHHHH
Q 043823 342 LTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSVEQLKE 421 (454)
Q Consensus 342 Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~e 421 (454)
...++.+|..+.-..++|-..+.++.++
T Consensus 80 ----------------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~ 107 (267)
T PRK10128 80 ----------------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQ 107 (267)
T ss_pred ----------------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHH
Confidence 1246777777776667888888888888
Q ss_pred HHHHcccC
Q 043823 422 DIDAFFTA 429 (454)
Q Consensus 422 nl~a~~~~ 429 (454)
.+++..++
T Consensus 108 ~V~a~rYp 115 (267)
T PRK10128 108 VVSATRYP 115 (267)
T ss_pred HHHhcCCC
Confidence 88877663
No 47
>PRK07945 hypothetical protein; Provisional
Probab=45.02 E-value=2.9e+02 Score=27.83 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=52.4
Q ss_pred CCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeC------C------CChhHHHHHH
Q 043823 221 TDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVS------N------ETSYGVMEFV 288 (454)
Q Consensus 221 ~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvS------n------~~~~~l~~~~ 288 (454)
.||+ +.-+|+... .+.++..+.|.++.+.+.+..+|=- + .....+.+++
T Consensus 191 ~D~v-IgSvH~~~~------------------~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~ 251 (335)
T PRK07945 191 LDVV-VASVHSKLR------------------MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVF 251 (335)
T ss_pred CCEE-EEEeecCCC------------------CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHH
Confidence 5666 777897531 1234567888888888887777721 1 1112346778
Q ss_pred HHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeE
Q 043823 289 HAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGL 331 (454)
Q Consensus 289 ~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~v 331 (454)
+.+.+.+.. +.+|-.. +.. .+...++..|+ +.|+.+
T Consensus 252 ~a~~e~g~~-lEINt~~---~r~-~P~~~il~~a~--e~G~~v 287 (335)
T PRK07945 252 AACREHGTA-VEINSRP---ERR-DPPTRLLRLAL--DAGCLF 287 (335)
T ss_pred HHHHHhCCE-EEEeCCC---CCC-CChHHHHHHHH--HcCCeE
Confidence 888877643 4444322 222 24567999999 888865
No 48
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=44.34 E-value=3.1e+02 Score=26.66 Aligned_cols=140 Identities=13% Similarity=0.014 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCc-hHHHHHHHhhcCCCCcEEEEeeccCCCCCccccccccccc
Q 043823 123 QNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGK-TDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVL 201 (454)
Q Consensus 123 ~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~-sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~ 201 (454)
..+.++..++.....+.||..||....-......+..+. .++.+..+-+..++.++......-.... +
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~-----------~ 85 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVG-----------Y 85 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccC-----------c
Confidence 346788888889999999999999842100000000122 3455655554444444443333210000 0
Q ss_pred CCCHHH-HHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEee----
Q 043823 202 RVDAAN-IKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGV---- 276 (454)
Q Consensus 202 ~~s~~~-i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGv---- 276 (454)
..-|.. .+..++.+. ..|+|.|-+ -.+- .+++.+.++++..++.|+.-.+.+
T Consensus 86 ~~~p~~~~~~di~~~~-~~g~~~iri---~~~~-------------------~~~~~~~~~i~~ak~~G~~v~~~i~~~~ 142 (275)
T cd07937 86 RHYPDDVVELFVEKAA-KNGIDIFRI---FDAL-------------------NDVRNLEVAIKAVKKAGKHVEGAICYTG 142 (275)
T ss_pred cCCCcHHHHHHHHHHH-HcCCCEEEE---eecC-------------------ChHHHHHHHHHHHHHCCCeEEEEEEecC
Confidence 112233 333333333 345555444 2221 235677888888899997444344
Q ss_pred -CCCChhHHHHHHHHHHHcCC
Q 043823 277 -SNETSYGVMEFVHAAEVEGL 296 (454)
Q Consensus 277 -Sn~~~~~l~~~~~~~~~~~~ 296 (454)
+.++.+.+.++.+.+...|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga 163 (275)
T cd07937 143 SPVHTLEYYVKLAKELEDMGA 163 (275)
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 45666677777777766653
No 49
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=43.76 E-value=39 Score=31.23 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHH
Q 043823 211 SVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHA 290 (454)
Q Consensus 211 ~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~ 290 (454)
.+++.|....-+.+|.+.+..-- ..+...-..|+++.+=|+---|++-||..|...- +.
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqtL-------------------Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~--~l 121 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQTL-------------------QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRL--QL 121 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhHH-------------------HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHH--HH
Confidence 34555666666677776665421 1122334457777788887789999999876432 22
Q ss_pred HHHcCCCCEEEEecccccccccc----chhhhHhhhcccCCCeeEEecccccCCc
Q 043823 291 AEVEGLPKIVSIQNSYSLLVRCR----FEVDLVEVCHPKNCNIGLLAYSPLGGGS 341 (454)
Q Consensus 291 ~~~~~~~~~~~vQ~~ynll~~~~----~~~~ll~~c~~~~~gi~via~spL~~G~ 341 (454)
+ ..|. .|..-+.+|+-.+..+ .-.++.++|+ +.||.|.-..++..+.
T Consensus 122 ~-~~Gr-mPvt~~lPy~WYdTPNih~~Ti~DFe~lc~--~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 122 L-LRGR-MPVTKALPYEWYDTPNIHLCTIKDFEDLCR--ELGIRIEERVFLDGGR 172 (193)
T ss_pred H-hcCC-CCCCCCCCCcccCCCCcccccHHHHHHHHH--HCCCEEEEEEEEcCCC
Confidence 2 1232 3555566776444311 1268899999 9999999999988764
No 50
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=43.44 E-value=2.3e+02 Score=29.48 Aligned_cols=118 Identities=23% Similarity=0.331 Sum_probs=67.1
Q ss_pred cCceeeccccCCC--------CCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEE
Q 043823 110 ISEITLGTMTFGE--------QNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIA 181 (454)
Q Consensus 110 Vs~lglGt~~~g~--------~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~ 181 (454)
|-+|.+|..+|.. ..+.+++.++++.+.+.|+.-|--==.||.| |
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP------~--------------------- 200 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLP------G--------------------- 200 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------C---------------------
Confidence 3488999887643 2466777788888877777766444556521 1
Q ss_pred eeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEE-eCCchhhhcccccccccCCCCCCC-CHHHHH
Q 043823 182 TKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQI-HWPDRYVALFGEYMYDYSKWRPSV-PIVEQL 259 (454)
Q Consensus 182 TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~l-H~pd~~~~~~~~~~~~~~~~~~~~-~~~e~~ 259 (454)
.+.+.+.+.+++.+ .|+.|+|.+|.+ |-|...... ...+.. +.+.. ...+.+
T Consensus 201 ---------------------QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~---~~~~~~-~lP~~d~~~~~~ 254 (416)
T COG0635 201 ---------------------QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQ---RKIKGK-ALPDEDEKADMY 254 (416)
T ss_pred ---------------------CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhh---hcccCC-CCcChHHHHHHH
Confidence 14566666666554 467899999977 344321110 000000 11111 112344
Q ss_pred HHHH-HHHHcCcccEEeeCCCCh
Q 043823 260 RAFK-ELIDEGKVRYIGVSNETS 281 (454)
Q Consensus 260 ~aL~-~L~~~G~Ir~iGvSn~~~ 281 (454)
+... .|.+.|. +.+|+|||.-
T Consensus 255 ~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 255 ELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred HHHHHHHHHCCC-cEEeechhcC
Confidence 4444 4556677 9999999974
No 51
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=42.29 E-value=1.3e+02 Score=29.68 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=67.6
Q ss_pred CcccEEeeCCCChhHHHHHHHHHHHcCCCCEE---EEeccccccccccchhhhHhhhcccCCCeeEEecccccCCcCCCc
Q 043823 269 GKVRYIGVSNETSYGVMEFVHAAEVEGLPKIV---SIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGK 345 (454)
Q Consensus 269 G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~---~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~ 345 (454)
+++-.+-=++++.+...++.+..+... +... .+.+.+--.+| ++.+.++++ +-++-++. ||.-+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~-~~~~~~~~nTIC~aT~~R---Q~a~~~La~--~vD~miVI-----Gg~~S-- 221 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRF-PELEGPVFNTICYATQNR---QEAARELAK--EVDAMIVI-----GGKNS-- 221 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHS-TCEE-SCC-S--CHHHHH---HHHHHHHHC--CSSEEEEE-----S-TT---
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhC-ccccCCCCCCCCHhHHHH---HHHHHHHHh--hCCEEEEe-----cCCCC--
Confidence 467777778888888888888887653 2222 22222222222 467788888 77776665 33110
Q ss_pred cCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCCeEEeecCCCHHHH
Q 043823 346 YLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGL------TPVQLALGFVRDRPFMTSSIIGATSVEQL 419 (454)
Q Consensus 346 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~aqvaL~w~L~~~~v~~vI~G~~~~~~l 419 (454)
++ ..+|.++|++++. ++.++...|+-... ...+..|+|+|+.+
T Consensus 222 --sN----------------------------T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~i 270 (281)
T PF02401_consen 222 --SN----------------------------TRKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWI 270 (281)
T ss_dssp --HH----------------------------HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHH
T ss_pred --cc----------------------------HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHH
Confidence 00 1378999999884 78899999998876 45799999999987
Q ss_pred HHHH
Q 043823 420 KEDI 423 (454)
Q Consensus 420 ~enl 423 (454)
-+.+
T Consensus 271 i~eV 274 (281)
T PF02401_consen 271 IEEV 274 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 52
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=42.25 E-value=87 Score=29.25 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeC-CCChh
Q 043823 204 DAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVS-NETSY 282 (454)
Q Consensus 204 s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvS-n~~~~ 282 (454)
++++++.+ ..+|.|++-+++.+.-. ...+.+ ....+.+.. .+.+..+||. |-+.+
T Consensus 12 ~~eda~~~-----~~~Gad~iGfI~~~~S~-----------------R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~ 67 (210)
T PRK01222 12 TPEDAEAA-----AELGADAIGFVFYPKSP-----------------RYVSPE-QAAELAAAL-PPFVKVVGVFVNASDE 67 (210)
T ss_pred cHHHHHHH-----HHcCCCEEEEccCCCCC-----------------CcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHH
Confidence 44555544 45899999997433211 112232 233333222 3568899996 44444
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccc
Q 043823 283 GVMEFVHAAEVEGLPKIVSIQNSY 306 (454)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~vQ~~y 306 (454)
++.+.++.. .++++|++-
T Consensus 68 ---~i~~~~~~~---~~d~vQLHg 85 (210)
T PRK01222 68 ---EIDEIVETV---PLDLLQLHG 85 (210)
T ss_pred ---HHHHHHHhc---CCCEEEECC
Confidence 444555443 588999753
No 53
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.70 E-value=3.8e+02 Score=26.69 Aligned_cols=130 Identities=17% Similarity=0.120 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHc-CCCEEECCCCCCCCCCCCCCCchHHHHHHHh---hcCC-CCcEEEEeeccCCCCCccccccccc
Q 043823 125 TEKESHEILSYAFEN-GINILDSSEAYPIPMKKETQGKTDLYIASWL---KSQP-RDKVIIATKVSGYSERSSFLRDNAK 199 (454)
Q Consensus 125 ~~~~a~~~l~~Ale~-Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL---~~~~-R~~v~I~TK~~~~~~~~~~~~~~~~ 199 (454)
+.++..++++...+. ||+.+--+- |.|. -.+...|.+.+ +..+ -..+-|.|+....
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl-----~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~------------ 180 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPL-----VLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA------------ 180 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcc-----cCCHHHHHHHHHHHHhCCCccEEEEeCCCccc------------
Confidence 456677777766544 787542221 2111 11222233332 3332 3346677775321
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEE-----
Q 043823 200 VLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYI----- 274 (454)
Q Consensus 200 ~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~i----- 274 (454)
.+..+...+-+.|++.|. . ..+.+|.... ..-.++++++++.|++.|..-.+
T Consensus 181 ----~p~rit~ell~~L~~~g~-~-v~i~l~~~h~-----------------~el~~~~~~ai~~L~~~Gi~v~~q~vLl 237 (321)
T TIGR03822 181 ----DPARVTPALIAALKTSGK-T-VYVALHANHA-----------------RELTAEARAACARLIDAGIPMVSQSVLL 237 (321)
T ss_pred ----ChhhcCHHHHHHHHHcCC-c-EEEEecCCCh-----------------hhcCHHHHHHHHHHHHcCCEEEEEeeEe
Confidence 233444455556666673 2 3567776431 11136889999999999962211
Q ss_pred -eeCCCChhHHHHHHHHHHHcCCC
Q 043823 275 -GVSNETSYGVMEFVHAAEVEGLP 297 (454)
Q Consensus 275 -GvSn~~~~~l~~~~~~~~~~~~~ 297 (454)
|+ |.+.+.+.++.+.+...|..
T Consensus 238 ~gv-Nd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 238 RGV-NDDPETLAALMRAFVECRIK 260 (321)
T ss_pred CCC-CCCHHHHHHHHHHHHhcCCe
Confidence 33 56666677777777666543
No 54
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=39.63 E-value=1.2e+02 Score=28.70 Aligned_cols=110 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcC-cccEEe
Q 043823 197 NAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEG-KVRYIG 275 (454)
Q Consensus 197 ~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G-~Ir~iG 275 (454)
+.....++.+...+-++. |..+|+++|++-..-.+. .....++.++.+.++.+.+ .++...
T Consensus 10 q~~~~~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~-----------------~~p~~~~~~~~i~~l~~~~~~~~~~~ 71 (265)
T cd03174 10 QSEGATFSTEDKLEIAEA-LDEAGVDSIEVGSGASPK-----------------AVPQMEDDWEVLRAIRKLVPNVKLQA 71 (265)
T ss_pred cCCCCCCCHHHHHHHHHH-HHHcCCCEEEeccCcCcc-----------------ccccCCCHHHHHHHHHhccCCcEEEE
Q ss_pred eCCCChhHHHHHHHHHHHcCCCCEEEEecccccc--------------ccccchhhhHhhhcccCCCeeEEec
Q 043823 276 VSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLL--------------VRCRFEVDLVEVCHPKNCNIGLLAY 334 (454)
Q Consensus 276 vSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll--------------~~~~~~~~ll~~c~~~~~gi~via~ 334 (454)
++.-....++.+.+. .++.+++.+..- .. ..-...+++++ ++|+.+...
T Consensus 72 l~~~~~~~i~~a~~~-------g~~~i~i~~~~s~~~~~~~~~~~~~~~~-~~~~~~i~~a~--~~G~~v~~~ 134 (265)
T cd03174 72 LVRNREKGIERALEA-------GVDEVRIFDSASETHSRKNLNKSREEDL-ENAEEAIEAAK--EAGLEVEGS 134 (265)
T ss_pred EccCchhhHHHHHhC-------CcCEEEEEEecCHHHHHHHhCCCHHHHH-HHHHHHHHHHH--HCCCeEEEE
No 55
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=39.36 E-value=3.7e+02 Score=26.18 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHH--cCcc-cEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELID--EGKV-RYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~--~G~I-r~iGvSn 278 (454)
.++.+.+++-++..++.+|++. +++-.-.. +. .....+|-.+.++..++ .|++ -..|++.
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~g---i~~~GstG------E~--------~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~ 79 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDG---LYVNGSTG------EG--------FLLSVEERKQIAEIVAEAAKGKVTLIAHVGS 79 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCE---EEECcCCc------Cc--------ccCCHHHHHHHHHHHHHHhCCCCeEEeccCC
Confidence 4678888888888888666644 45544321 11 23445565555555544 3554 4579988
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcc--cCC-CeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHP--KNC-NIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~--~~~-gi~via~s 335 (454)
.+.....++.+.+++.|...+.++ .+|.. .. .+++++++.+. ... ++.++.|.
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~-~P~y~-~~--~~~~i~~~~~~v~~a~~~lpi~iYn 135 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAI-TPFYY-KF--SFEEIKDYYREIIAAAASLPMIIYH 135 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-CCCCC-CC--CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 888877888888888776544333 34322 11 24455554331 156 78888884
No 56
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=39.06 E-value=51 Score=31.45 Aligned_cols=74 Identities=19% Similarity=0.394 Sum_probs=47.1
Q ss_pred CCCcccCceeeccc---cCCCCC--CHHHHHHH----HHHHHHcCCCEEECC--CCCCCCCCCCCCCchHHHHHHHhhc-
Q 043823 105 DSDLVISEITLGTM---TFGEQN--TEKESHEI----LSYAFENGINILDSS--EAYPIPMKKETQGKTDLYIASWLKS- 172 (454)
Q Consensus 105 ~tgl~Vs~lglGt~---~~g~~~--~~~~a~~~----l~~Ale~Gin~fDTA--~~Yg~~~~~~~~G~sE~~lG~aL~~- 172 (454)
.+|+.+|.++|.+. .||+.. ..+++.++ +..|.+.||+.|--| ++|-- -.+|+-..+++.+
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE-------~~d~eT~~rFi~g~ 137 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYE-------EADEETRQRFIEGL 137 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeec-------cCCHHHHHHHHHHH
Confidence 57999999999996 477652 34455554 555668899999998 35531 1234444444432
Q ss_pred ------CCCCcEEEEeecc
Q 043823 173 ------QPRDKVIIATKVS 185 (454)
Q Consensus 173 ------~~R~~v~I~TK~~ 185 (454)
-.+-+|.++--+.
T Consensus 138 ~~a~~lA~~aqV~lAvEiM 156 (287)
T COG3623 138 KWAVELAARAQVMLAVEIM 156 (287)
T ss_pred HHHHHHHHhhccEEEeeec
Confidence 1366777777764
No 57
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=38.90 E-value=2.1e+02 Score=28.21 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=68.8
Q ss_pred cccEEeeCCCChhHHHHHHHHHHHcCC--CCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCCcCCCccC
Q 043823 270 KVRYIGVSNETSYGVMEFVHAAEVEGL--PKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYL 347 (454)
Q Consensus 270 ~Ir~iGvSn~~~~~l~~~~~~~~~~~~--~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~~~ 347 (454)
++-++-=.+-+.+...+++++++.... ..+..+-+.|---+| ++.+.+.+. +-++-++.-++-.+
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nR---Q~Avk~la~--~~Dl~iVVG~~nSS-------- 225 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNR---QDAVKELAP--EVDLVIVVGSKNSS-------- 225 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhH---HHHHHHHhh--cCCEEEEECCCCCc--------
Confidence 444444455566777777777765421 112222233322233 455666776 66776666333221
Q ss_pred CCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCCeEEeecCCCHHHHHH
Q 043823 348 DINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGL------TPVQLALGFVRDRPFMTSSIIGATSVEQLKE 421 (454)
Q Consensus 348 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~e 421 (454)
+ ..+|.++|+++|. ++.++=..|+-... ...+-.|+|+|+-|-+
T Consensus 226 -N----------------------------s~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAStPd~lV~ 275 (294)
T COG0761 226 -N----------------------------SNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGASTPDWLVQ 275 (294)
T ss_pred -c----------------------------HHHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCCCHHHHH
Confidence 1 1278999999986 67888899998855 4579999999998877
Q ss_pred HH
Q 043823 422 DI 423 (454)
Q Consensus 422 nl 423 (454)
++
T Consensus 276 ~V 277 (294)
T COG0761 276 EV 277 (294)
T ss_pred HH
Confidence 66
No 58
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=38.73 E-value=38 Score=25.10 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhc
Q 043823 380 KYIEMAKKHGLTPVQLALGFVRD 402 (454)
Q Consensus 380 ~l~~ia~~~g~s~aqvaL~w~L~ 402 (454)
.+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 47789999999999999999853
No 59
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=38.41 E-value=1.6e+02 Score=29.03 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=68.5
Q ss_pred CcccEEeeCCCChhHHHHHHHHHHHcCCCCEEE-EeccccccccccchhhhHhhhcccCCCeeEEecccccCCcCCCccC
Q 043823 269 GKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVS-IQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYL 347 (454)
Q Consensus 269 G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~-vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~~~ 347 (454)
.++-.+-=++.+.+...++.+..+... +.+.+ +.+.|--.+| ++.+.++++ +.++-++. ||.= .
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~-~~~~v~~TIC~aT~~R---Q~a~~~La~--~vD~miVV-----Gg~~----S 221 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKS-KELVFFNTICSATKKR---QESAKELSK--EVDVMIVI-----GGKH----S 221 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhC-cccccCCCcchhhhhH---HHHHHHHHH--hCCEEEEe-----cCCC----C
Confidence 444444446777777777777776532 22321 2222222222 456777787 77776665 3321 1
Q ss_pred CCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCCeEEeecCCCHHHHHH
Q 043823 348 DINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGL------TPVQLALGFVRDRPFMTSSIIGATSVEQLKE 421 (454)
Q Consensus 348 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~e 421 (454)
+++ .+|.++|.+++. ++.++-..|+.... ...+..|+|+|+.+-+
T Consensus 222 sNT----------------------------~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~ 272 (281)
T PRK12360 222 SNT----------------------------QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIE 272 (281)
T ss_pred ccH----------------------------HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHH
Confidence 111 268889988874 78899899998765 4579999999997755
Q ss_pred HH
Q 043823 422 DI 423 (454)
Q Consensus 422 nl 423 (454)
.+
T Consensus 273 eV 274 (281)
T PRK12360 273 EV 274 (281)
T ss_pred HH
Confidence 44
No 60
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=36.97 E-value=1.8e+02 Score=22.91 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCHHHHH---HHHHhcCCCCeEEeecCCCHHHHHHHHHHcccCCCCCCHHHHHHHHHHHhhcCCCC
Q 043823 379 IKYIEMAKKHGLTPVQLA---LGFVRDRPFMTSSIIGATSVEQLKEDIDAFFTAERPLPQEVMADVEDIFKRYRDPT 452 (454)
Q Consensus 379 ~~l~~ia~~~g~s~aqva---L~w~L~~~~v~~vI~G~~~~~~l~enl~a~~~~~~~L~~e~~~~L~~~~~~~~~~~ 452 (454)
+...++++++|+++.++. ++++.....+ -+....+++++.+.|+.+.+++++|.
T Consensus 14 ~~A~~vl~~lGls~S~Ai~~fl~qi~~~~~i--------------------PF~~~~~s~ed~~~l~~~re~~~~~~ 70 (80)
T PRK11235 14 ARAYAVLEKLGVTPSEALRLLLQYVAENGRL--------------------PFKTVLLSDEDAALLETVRERLANPQ 70 (80)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCC--------------------CCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 567889999999998753 3444444433 11112688899999998888888774
No 61
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=36.14 E-value=4.4e+02 Score=26.12 Aligned_cols=135 Identities=11% Similarity=0.116 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCC-CCcEEEEeeccCCCCCcccccccccccC
Q 043823 124 NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQP-RDKVIIATKVSGYSERSSFLRDNAKVLR 202 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~-R~~v~I~TK~~~~~~~~~~~~~~~~~~~ 202 (454)
.+.++..++++.+.+.|+..|.-.. |.|.- .-.-.+++..+ +..+ -+++.|+|-.. .
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltG--GEPll---~~~l~~li~~i-~~~~gi~~v~itTNG~-l--------------- 100 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTG--GEPLL---RKDLVELVARL-AALPGIEDIALTTNGL-L--------------- 100 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--ccccc---cCCHHHHHHHH-HhcCCCCeEEEEeCch-h---------------
Confidence 4678899999999999998876542 32211 11133444443 3222 23677877531 1
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCC-CCCCHHHHHHHHHHHHHcCcc----cEEeeC
Q 043823 203 VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWR-PSVPIVEQLRAFKELIDEGKV----RYIGVS 277 (454)
Q Consensus 203 ~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~-~~~~~~e~~~aL~~L~~~G~I----r~iGvS 277 (454)
+. ..-+.|.+.|+++|- +-+|..+.... .. .. .....++++++++.+++.|.- ..+-+.
T Consensus 101 -----l~-~~~~~L~~~gl~~v~-ISld~~~~~~~--~~-------i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~ 164 (334)
T TIGR02666 101 -----LA-RHAKDLKEAGLKRVN-VSLDSLDPERF--AK-------ITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMR 164 (334)
T ss_pred -----HH-HHHHHHHHcCCCeEE-EecccCCHHHh--he-------eCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 11 123456666765543 23444432110 00 00 123578999999999998862 233445
Q ss_pred CCChhHHHHHHHHHHHcCC
Q 043823 278 NETSYGVMEFVHAAEVEGL 296 (454)
Q Consensus 278 n~~~~~l~~~~~~~~~~~~ 296 (454)
+.+.+++.++++.+...+.
T Consensus 165 g~n~~ei~~l~~~~~~~gv 183 (334)
T TIGR02666 165 GVNDDEIVDLAEFAKERGV 183 (334)
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 6777888899998888765
No 62
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=36.13 E-value=4.6e+02 Score=26.24 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCCC
Q 043823 125 TEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVD 204 (454)
Q Consensus 125 ~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s 204 (454)
+.++..+.++.+.+.|++.|-.--..+.... +..-...+.+ ++++..-.+++.|.-.... .++
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~---------------~~~ 201 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG-EDLREDLARV-RAVREAVGPDVDLMVDANG---------------RWD 201 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch-HHHHHHHHHH-HHHHHhhCCCCEEEEECCC---------------CCC
Confidence 4677778888889999999865432210000 0000011222 2333221345666666532 124
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCccc-EEeeCCCChhH
Q 043823 205 AANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVR-YIGVSNETSYG 283 (454)
Q Consensus 205 ~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir-~iGvSn~~~~~ 283 (454)
.+... +-+++|. ..++.+++.|-. .+-++.+.+|++.-.|. ..|=|.++.+.
T Consensus 202 ~~~a~----~~~~~l~--~~~i~~iEqP~~---------------------~~~~~~~~~l~~~~~ipi~~dE~~~~~~~ 254 (357)
T cd03316 202 LAEAI----RLARALE--EYDLFWFEEPVP---------------------PDDLEGLARLRQATSVPIAAGENLYTRWE 254 (357)
T ss_pred HHHHH----HHHHHhC--ccCCCeEcCCCC---------------------ccCHHHHHHHHHhCCCCEEeccccccHHH
Confidence 44333 2233332 235556666531 12356777888875555 33345556555
Q ss_pred HHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecc
Q 043823 284 VMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYS 335 (454)
Q Consensus 284 l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~s 335 (454)
+.++++. ..++++|+.....---..-..+...|+ ++|+.++..+
T Consensus 255 ~~~~i~~------~~~d~v~~k~~~~GGi~~~~~i~~~a~--~~g~~~~~~~ 298 (357)
T cd03316 255 FRDLLEA------GAVDIIQPDVTKVGGITEAKKIAALAE--AHGVRVAPHG 298 (357)
T ss_pred HHHHHHh------CCCCEEecCccccCCHHHHHHHHHHHH--HcCCeEeccC
Confidence 5444432 247788876443221012257888999 9999987654
No 63
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=35.91 E-value=2.5e+02 Score=23.08 Aligned_cols=82 Identities=16% Similarity=0.256 Sum_probs=60.4
Q ss_pred eccccCCCCCCHHHHHHHHHHHHHcCCCE-EECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCccc
Q 043823 115 LGTMTFGEQNTEKESHEILSYAFENGINI-LDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSF 193 (454)
Q Consensus 115 lGt~~~g~~~~~~~a~~~l~~Ale~Gin~-fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~ 193 (454)
+||.++-...++++..+-|+.++..|.+. +.-|+. ...|..++-+-|+.-+.
T Consensus 3 ~~t~sylp~lt~~~i~~QI~yll~qG~~~~lE~ad~----------------------~~~~~~yW~mwklP~f~----- 55 (99)
T cd03527 3 FETFSYLPPLTDEQIAKQIDYIISNGWAPCLEFTEP----------------------EHYDNRYWTMWKLPMFG----- 55 (99)
T ss_pred ccccccCCCCCHHHHHHHHHHHHhCCCEEEEEcccC----------------------CCCCCCEEeeccCCCCC-----
Confidence 68888877778999999999999999762 332211 12466677777764332
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeC
Q 043823 194 LRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHW 231 (454)
Q Consensus 194 ~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~ 231 (454)
.-++..+...|++.++.-.-+||=|+=+..
T Consensus 56 --------~~d~~~Vl~ei~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 56 --------CTDPAQVLREIEACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred --------CCCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 237899999999999999888988775543
No 64
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=34.31 E-value=3.4e+02 Score=27.22 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=51.9
Q ss_pred HHHHhCCCcccEEEEeC-CchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccE-EeeCCC---ChhHHHHHHH
Q 043823 215 SLKRLNTDYIDLLQIHW-PDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRY-IGVSNE---TSYGVMEFVH 289 (454)
Q Consensus 215 SL~rLg~d~iDl~~lH~-pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~-iGvSn~---~~~~l~~~~~ 289 (454)
.-+.+|.|+|||-+.-. |+. .+...++....++...+.=.+=- |..|.. +++-+++.++
T Consensus 84 q~~~~GAd~Idl~~~s~dp~~----------------~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale 147 (319)
T PRK04452 84 CVEEYGADMITLHLISTDPNG----------------KDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAE 147 (319)
T ss_pred HHHHhCCCEEEEECCCCCccc----------------ccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHH
Confidence 34578888888765332 321 12344555555555544333322 666633 4555555555
Q ss_pred HHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccc
Q 043823 290 AAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPL 337 (454)
Q Consensus 290 ~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL 337 (454)
.+.. .++-.+-.. ... -+.+.+.|+ ++|..|++.+|.
T Consensus 148 ~~~g---~~pLInSat-----~en-~~~i~~lA~--~y~~~Vva~s~~ 184 (319)
T PRK04452 148 AAEG---ERCLLGSAE-----EDN-YKKIAAAAM--AYGHAVIAWSPL 184 (319)
T ss_pred HhCC---CCCEEEECC-----HHH-HHHHHHHHH--HhCCeEEEEcHH
Confidence 5532 123332222 111 247889999 999999998754
No 65
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=33.87 E-value=5.1e+02 Score=26.13 Aligned_cols=123 Identities=21% Similarity=0.233 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCC---------CCCCCCCC--chHHHHHHHhhcCCCCcEEEEeeccCCCCCcc
Q 043823 124 NTEKESHEILSYAFENGINILDSSEAYPI---------PMKKETQG--KTDLYIASWLKSQPRDKVIIATKVSGYSERSS 192 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~---------~~~~~~~G--~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~ 192 (454)
.+.+.-.++.++|-+.|+-+|=|--.+.. +.=+-..| ....+|-...+. -..++++|-..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~--~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKK--GKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhc--CCCEEEEcccc-------
Confidence 46777788999999999999977654430 00000000 012223222221 33677777654
Q ss_pred cccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHH-HHHHHHHHHcCcc
Q 043823 193 FLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQ-LRAFKELIDEGKV 271 (454)
Q Consensus 193 ~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~-~~aL~~L~~~G~I 271 (454)
+-+.|.++++...++=. .|+.+||+...|- .+.+++ +.+|..|.+.= -
T Consensus 158 -----------~~~ei~~av~~~r~~g~---~~i~LLhC~s~YP----------------ap~ed~NL~~i~~l~~~F-n 206 (347)
T COG2089 158 -----------TIEEIEEAVAILRENGN---PDIALLHCTSAYP----------------APFEDVNLKAIPKLAEAF-N 206 (347)
T ss_pred -----------cHHHHHHHHHHHHhcCC---CCeEEEEecCCCC----------------CCHHHhhHHHHHHHHHHh-C
Confidence 44777777766555433 2999999987542 233443 66666666653 4
Q ss_pred cEEeeCCCChhHHHH
Q 043823 272 RYIGVSNETSYGVME 286 (454)
Q Consensus 272 r~iGvSn~~~~~l~~ 286 (454)
--||+|.|+..-+.-
T Consensus 207 ~~vGlSDHT~g~~a~ 221 (347)
T COG2089 207 AIVGLSDHTLGILAP 221 (347)
T ss_pred CccccccCccchhHH
Confidence 469999999764433
No 66
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=32.50 E-value=5.5e+02 Score=26.08 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECC
Q 043823 124 NTEKESHEILSYAFENGINILDSS 147 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA 147 (454)
.+.++..++++...+.||..|+..
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 467888899999999999999997
No 67
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=31.88 E-value=4.8e+02 Score=25.20 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc---CcccEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE---GKVRYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~---G~Ir~iGvSn 278 (454)
.++.+.+++.++.-++ - -+|-+++-.-.. +. .....+|-.+.++...+. ...-.+|++.
T Consensus 17 ~iD~~~~~~~i~~l~~-~---Gv~gl~v~GstG------E~--------~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 78 (284)
T cd00950 17 SVDFDALERLIEFQIE-N---GTDGLVVCGTTG------ES--------PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS 78 (284)
T ss_pred CcCHHHHHHHHHHHHH-c---CCCEEEECCCCc------ch--------hhCCHHHHHHHHHHHHHHhCCCCcEEeccCC
Confidence 4677888888776665 3 456555543321 10 123445544444444443 3455799998
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcc--cCCCeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHP--KNCNIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~--~~~gi~via~s 335 (454)
.+..+..++.+.+...|...+. +..++.. + ..+++++++.+. ...++.++.|.
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~-~~~P~~~--~-~~~~~l~~~~~~ia~~~~~pi~lYn 133 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAAL-VVTPYYN--K-PSQEGLYAHFKAIAEATDLPVILYN 133 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEE-EcccccC--C-CCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8888888888888887754333 3333321 1 124555554431 15688888884
No 68
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=31.79 E-value=3e+02 Score=25.82 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchH---HHHHHHhhcCCCCcEEEEeeccCCCCCccccccccccc
Q 043823 125 TEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTD---LYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVL 201 (454)
Q Consensus 125 ~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE---~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~ 201 (454)
++++...+.+.|.++|..|+=|+..|+. .|.+. +.+.+.+++ + +-.|..+-..
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~------~gat~~dv~~m~~~v~~--~----v~IKaaGGir------------ 185 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGA------GGATVEDVRLMRNTVGD--T----IGVKASGGVR------------ 185 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCC------CCCCHHHHHHHHHHhcc--C----CeEEEeCCCC------------
Confidence 5577779999999999999999988862 23332 344444442 2 3445432211
Q ss_pred CCCHHHHHHHHHHHHHHhCCCc
Q 043823 202 RVDAANIKESVEKSLKRLNTDY 223 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~ 223 (454)
+.+...+-++.--.|+|+++
T Consensus 186 --t~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 186 --TAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred --CHHHHHHHHHHhhHHhCcch
Confidence 67888999999999999875
No 69
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=31.70 E-value=4e+02 Score=24.29 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=24.0
Q ss_pred cccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCCh
Q 043823 223 YIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNETS 281 (454)
Q Consensus 223 ~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~ 281 (454)
.+|.+|||..+. .+....+.+......++.+|++.+..
T Consensus 73 ~~d~Vqlhg~e~---------------------~~~~~~l~~~~~~~~i~~i~~~~~~~ 110 (203)
T cd00405 73 GLDVVQLHGDES---------------------PEYCAQLRARLGLPVIKAIRVKDEED 110 (203)
T ss_pred CCCEEEECCCCC---------------------HHHHHHHHhhcCCcEEEEEecCChhh
Confidence 578999997541 12233333333346889999998754
No 70
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.60 E-value=5.2e+02 Score=25.51 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHH--cCcc-cEEeeCCC
Q 043823 203 VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELID--EGKV-RYIGVSNE 279 (454)
Q Consensus 203 ~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~--~G~I-r~iGvSn~ 279 (454)
.+.+.+++-++..++ .-+|=+++-.-.. +. .....+|-.+.++..++ .|+| --.|++..
T Consensus 22 vD~~a~~~lv~~li~----~Gv~gi~~~GttG------E~--------~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~ 83 (299)
T COG0329 22 VDEEALRRLVEFLIA----AGVDGLVVLGTTG------ES--------PTLTLEERKEVLEAVVEAVGGRVPVIAGVGSN 83 (299)
T ss_pred cCHHHHHHHHHHHHH----cCCCEEEECCCCc------cc--------hhcCHHHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 455555555444333 4467555554331 11 34667788888888877 4666 67789888
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecc-cccCC
Q 043823 280 TSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYS-PLGGG 340 (454)
Q Consensus 280 ~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~s-pL~~G 340 (454)
+.....++.+.++..|...+.++---|+-..+......+...|. .-+++++.|. |...|
T Consensus 84 ~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~--a~~lPvilYN~P~~tg 143 (299)
T COG0329 84 STAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAE--AVDLPVILYNIPSRTG 143 (299)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHH--hcCCCEEEEeCccccC
Confidence 88888888999999887767666666665543222233444566 6688889886 54444
No 71
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.59 E-value=5.8e+02 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCC
Q 043823 124 NTEKESHEILSYAFENGINILDSSE 148 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~ 148 (454)
.+.++..++++...+.||..|+...
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G~ 47 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGF 47 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 4668888899999999999999863
No 72
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=31.41 E-value=1.9e+02 Score=25.75 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCccccccccccc
Q 043823 122 EQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVL 201 (454)
Q Consensus 122 ~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~ 201 (454)
...+++...-++++|-+.||.+|=.|..|| .+-..+-+.+.+ .=++++.|--.++...
T Consensus 9 ~eNT~~tle~a~erA~elgik~~vVAS~tG---------~tA~k~lemveg--~lkvVvVthh~Gf~e~----------- 66 (186)
T COG1751 9 KENTDETLEIAVERAKELGIKHIVVASSTG---------YTALKALEMVEG--DLKVVVVTHHAGFEEK----------- 66 (186)
T ss_pred ccchHHHHHHHHHHHHhcCcceEEEEeccc---------HHHHHHHHhccc--CceEEEEEeecccccC-----------
Confidence 344567777788999999999999999996 233333333332 1347777765444322
Q ss_pred CCCHHHHHHHHHHHHHHhCCC
Q 043823 202 RVDAANIKESVEKSLKRLNTD 222 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d 222 (454)
+...+...+++-|+..|.+
T Consensus 67 --g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 67 --GTQEMDEEVRKELKERGAK 85 (186)
T ss_pred --CceecCHHHHHHHHHcCce
Confidence 2244566778888888853
No 73
>PRK05588 histidinol-phosphatase; Provisional
Probab=31.40 E-value=4.6e+02 Score=24.89 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCCEEECCCCCCCCCC-CCCCC-chHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCCC
Q 043823 127 KESHEILSYAFENGINILDSSEAYPIPMK-KETQG-KTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVD 204 (454)
Q Consensus 127 ~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~-~~~~G-~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s 204 (454)
....+.+++|.+.|+..+ .+++...+.. ..... .-+..+-. ++..+.-+|++.--++ +.
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~-i~~~~~~~I~~GiE~~-----------------~~ 76 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNK-YSKYRNNKLLLGIELG-----------------ME 76 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHH-HHHHhcCCcceEEEec-----------------cc
Confidence 346689999999999999 8777422100 00000 11222211 2222223443333331 12
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHH----HHHHHHHHH-cCcccEEe---e
Q 043823 205 AANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQ----LRAFKELID-EGKVRYIG---V 276 (454)
Q Consensus 205 ~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~----~~aL~~L~~-~G~Ir~iG---v 276 (454)
++ ....+++.|++...||+ +.-+|+.+... .+....|. ..+.+++ ++.+.++++ .|++.-+| .
T Consensus 77 ~~-~~~~~~~~l~~~~~D~v-igSvH~~~~~~------~~~~~~~~-~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl 147 (255)
T PRK05588 77 KD-LIEENKELINKYEFDYV-IGSIHLVDKLD------LYLDEFYK-DKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDY 147 (255)
T ss_pred CC-CHHHHHHHHhhCCCCeE-EEeEEeeCCCc------chHHHHhc-CCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhH
Confidence 22 35666778888888888 88899864210 00011121 1233443 467777776 46544444 1
Q ss_pred C----CC---------ChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEec
Q 043823 277 S----NE---------TSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAY 334 (454)
Q Consensus 277 S----n~---------~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~ 334 (454)
- .+ -...++++++++.+.+.. +.+|--.+..-....+...++..|+ +.|+.++..
T Consensus 148 ~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~-lEINt~~l~~~~~~~~~~~~l~~~~--~~g~~~i~l 215 (255)
T PRK05588 148 ISRYAKYEDKEIYYDEFKEIIDEILKVLIEKEKV-LEINTRRLDDKRSVENLVKIYKRFY--ELGGKYITL 215 (255)
T ss_pred HHHcCccccccccHHHHHHHHHHHHHHHHHcCCE-EEEECcccCCCCCCCCHHHHHHHHH--HcCCcEEEE
Confidence 1 10 123456667777766542 4433211110000112234667777 777664443
No 74
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=30.94 E-value=5.3e+02 Score=25.47 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcC-CCCcEEEEeeccCCCCCcccccccccccC
Q 043823 124 NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ-PRDKVIIATKVSGYSERSSFLRDNAKVLR 202 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~-~R~~v~I~TK~~~~~~~~~~~~~~~~~~~ 202 (454)
.+.++..++++.+.+.|++.|.-.. |.|.- .-.-.+++.. ++.. .-.++.|+|-.. .
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll---~~~l~~li~~-i~~~~~~~~i~itTNG~-l--------------- 106 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLL---RKDLEDIIAA-LAALPGIRDLALTTNGY-L--------------- 106 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcC---ccCHHHHHHH-HHhcCCCceEEEEcCch-h---------------
Confidence 4678899999999999998876542 32211 0112333332 3332 124577776631 1
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCc----ccEEeeCC
Q 043823 203 VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGK----VRYIGVSN 278 (454)
Q Consensus 203 ~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~----Ir~iGvSn 278 (454)
+.+ .-+.|...|++.|- +-||..+.... . ........++++++++.+++.|. |..+.+-+
T Consensus 107 -----l~~-~~~~L~~agl~~i~-ISlds~~~e~~--~-------~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g 170 (331)
T PRK00164 107 -----LAR-RAAALKDAGLDRVN-VSLDSLDPERF--K-------AITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKG 170 (331)
T ss_pred -----HHH-HHHHHHHcCCCEEE-EEeccCCHHHh--c-------cCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECC
Confidence 111 12345555655442 34455443110 0 00122457899999999999986 33555556
Q ss_pred CChhHHHHHHHHHHHcCC
Q 043823 279 ETSYGVMEFVHAAEVEGL 296 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~ 296 (454)
.+.+++.++++.++..+.
T Consensus 171 ~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 171 VNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 777788899998887654
No 75
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.43 E-value=1.5e+02 Score=29.89 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=102.3
Q ss_pred eeecccCcccccccccccccCCccccccccccceeccCC---CCCCcchhhh-hhccCcccccCCCCcccCceeeccccC
Q 043823 45 ATFTTTGIISQLKLTRHSIQPLSNVTGRRSRKLVVRTSS---LKTPISAKQA-EKNAMQYRKLGDSDLVISEITLGTMTF 120 (454)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~m~~r~Lg~tgl~Vs~lglGt~~~ 120 (454)
...+..|.++||+...|.. .... +...++.+- ..+|+.=+-. -=.+|.+..++ .|..|-.+|+|. +
T Consensus 124 ~g~~~DGt~~~ggf~~~~~--v~~~-----~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~-pG~~vgI~GlGG--L 193 (360)
T KOG0023|consen 124 NGVYHDGTITQGGFQEYAV--VDEV-----FAIKIPENLPLASAAPLLCAGITVYSPLKRSGLG-PGKWVGIVGLGG--L 193 (360)
T ss_pred cccccCCCCccCccceeEE--Eeee-----eEEECCCCCChhhccchhhcceEEeehhHHcCCC-CCcEEEEecCcc--c
Confidence 3455677888888754443 1111 122222222 1222222221 22348888887 689999999998 6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccc
Q 043823 121 GEQNTEKESHEILSYAFENGIN--ILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNA 198 (454)
Q Consensus 121 g~~~~~~~a~~~l~~Ale~Gin--~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~ 198 (454)
|.- .++.|-.+|.+ .||+.+.= .|+. ++...-|.++++||-
T Consensus 194 Gh~--------aVq~AKAMG~rV~vis~~~~k-----------keea----~~~LGAd~fv~~~~d-------------- 236 (360)
T KOG0023|consen 194 GHM--------AVQYAKAMGMRVTVISTSSKK-----------KEEA----IKSLGADVFVDSTED-------------- 236 (360)
T ss_pred chH--------HHHHHHHhCcEEEEEeCCchh-----------HHHH----HHhcCcceeEEecCC--------------
Confidence 542 46677777755 67776432 4544 454545556666652
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCC
Q 043823 199 KVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSN 278 (454)
Q Consensus 199 ~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn 278 (454)
.++.+++..+++-. .|.+=-+--| ..-.++.-|+..|++-.+|+-+
T Consensus 237 -------~d~~~~~~~~~dg~-~~~v~~~a~~--------------------------~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 237 -------PDIMKAIMKTTDGG-IDTVSNLAEH--------------------------ALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred -------HHHHHHHHHhhcCc-ceeeeecccc--------------------------chHHHHHHhhcCCEEEEEeCcC
Confidence 22344444444321 1211111111 1223566778899999999987
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCee
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIG 330 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~ 330 (454)
.. ..+.-..- -+-.+.+..|..--....++++++|. +++|.
T Consensus 283 ~~-~~~~~~~l--------il~~~~I~GS~vG~~ket~E~Ldf~a--~~~ik 323 (360)
T KOG0023|consen 283 KP-LKLDTFPL--------ILGRKSIKGSIVGSRKETQEALDFVA--RGLIK 323 (360)
T ss_pred Cc-ccccchhh--------hcccEEEEeeccccHHHHHHHHHHHH--cCCCc
Confidence 53 11111110 12233344555543345678999999 77764
No 76
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=30.30 E-value=1.6e+02 Score=31.02 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=34.9
Q ss_pred HHhCCCcccEEEEe-CCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeC-CCChhHHHHHHHHHHHc
Q 043823 217 KRLNTDYIDLLQIH-WPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVS-NETSYGVMEFVHAAEVE 294 (454)
Q Consensus 217 ~rLg~d~iDl~~lH-~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvS-n~~~~~l~~~~~~~~~~ 294 (454)
..+|.|++-+.+.. .|. ..+.+.+ ..+.+... |+.+||- |-+.+. +.+.++..
T Consensus 274 ~~~GaD~lGfIf~~~SpR------------------~V~~~~a-~~i~~~l~---v~~VgVfv~~~~~~---i~~i~~~~ 328 (454)
T PRK09427 274 YDAGAVYGGLIFVEKSPR------------------YVSLEQA-QEIIAAAP---LRYVGVFRNADIED---IVDIAKQL 328 (454)
T ss_pred HhCCCCEEeeEeCCCCCC------------------CCCHHHH-HHHHHhCC---CCEEEEEeCCCHHH---HHHHHHHc
Confidence 34899999997433 222 2333333 33322222 8899996 545444 44444442
Q ss_pred CCCCEEEEeccc
Q 043823 295 GLPKIVSIQNSY 306 (454)
Q Consensus 295 ~~~~~~~vQ~~y 306 (454)
.++++|++-
T Consensus 329 ---~lD~vQLHG 337 (454)
T PRK09427 329 ---SLAAVQLHG 337 (454)
T ss_pred ---CCCEEEeCC
Confidence 589999764
No 77
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=30.12 E-value=2.4e+02 Score=23.15 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=54.3
Q ss_pred eccccCCCCCCHHHHHHHHHHHHHcCCCE-EECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCccc
Q 043823 115 LGTMTFGEQNTEKESHEILSYAFENGINI-LDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSF 193 (454)
Q Consensus 115 lGt~~~g~~~~~~~a~~~l~~Ale~Gin~-fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~ 193 (454)
|||.++-...++++..+-|+..+..|.+. +.-|+.= ..|..++-.-|+....
T Consensus 2 ~et~S~lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r----------------------~~r~~~W~mW~~p~~~----- 54 (99)
T PF00101_consen 2 FETFSYLPPLTDEEIAKQVRYLLSQGWIIGIEHADPR----------------------RFRTSYWQMWKLPMFG----- 54 (99)
T ss_dssp -STTTTSS---HHHHHHHHHHHHHTT-EEEEEEESCG----------------------GSTSSS-EEESSEBTT-----
T ss_pred CcccccCCCCCHHHHHHHHHhhhhcCceeeEEecCCC----------------------CCCCCEeecCCCCCcC-----
Confidence 57777766667889999999999999875 5444221 1344455555543221
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeC
Q 043823 194 LRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHW 231 (454)
Q Consensus 194 ~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~ 231 (454)
..++..+..+|++.++.---+||=|+=+..
T Consensus 55 --------~~~~~~Vl~el~~c~~~~p~~yVRlig~D~ 84 (99)
T PF00101_consen 55 --------CTDPAQVLAELEACLAEHPGEYVRLIGFDN 84 (99)
T ss_dssp --------BSSHHHHHHHHHHHHHHSTTSEEEEEEEET
T ss_pred --------CCCHHHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 237899999999999999999998876554
No 78
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=30.00 E-value=5.6e+02 Score=25.44 Aligned_cols=135 Identities=11% Similarity=0.114 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCC-CCcEEEEeeccCCCCCcccccccccccC
Q 043823 124 NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQP-RDKVIIATKVSGYSERSSFLRDNAKVLR 202 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~-R~~v~I~TK~~~~~~~~~~~~~~~~~~~ 202 (454)
.+.++..++++.+.+.|+..|--.- |.|.- .-.-++++..+ +..+ -.++.|+|-..
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tG--GEPll---r~dl~~li~~i-~~~~~l~~i~itTNG~----------------- 101 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTG--GEPLV---RRGCDQLVARL-GKLPGLEELSLTTNGS----------------- 101 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--cCCCc---cccHHHHHHHH-HhCCCCceEEEEeChh-----------------
Confidence 4678889999999999998775542 32211 01123344333 3222 23566666521
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCc----ccEEeeCC
Q 043823 203 VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGK----VRYIGVSN 278 (454)
Q Consensus 203 ~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~----Ir~iGvSn 278 (454)
.+. ..-+.|...|+++|- +-|+..+.... . ........+.++++++.+++.|. |..+.+..
T Consensus 102 ----ll~-~~~~~L~~aGl~~v~-ISlDs~~~e~~--~-------~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g 166 (329)
T PRK13361 102 ----RLA-RFAAELADAGLKRLN-ISLDTLRPELF--A-------ALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRG 166 (329)
T ss_pred ----HHH-HHHHHHHHcCCCeEE-EEeccCCHHHh--h-------hhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECC
Confidence 122 234556677777665 35555442110 0 00012347899999999999885 34455566
Q ss_pred CChhHHHHHHHHHHHcCC
Q 043823 279 ETSYGVMEFVHAAEVEGL 296 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~ 296 (454)
.+.+++.++++.+...+.
T Consensus 167 ~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGL 184 (329)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 777889999999988765
No 79
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=29.99 E-value=12 Score=37.79 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=18.5
Q ss_pred HcCcccEEeeCCCChhHHHHHHH
Q 043823 267 DEGKVRYIGVSNETSYGVMEFVH 289 (454)
Q Consensus 267 ~~G~Ir~iGvSn~~~~~l~~~~~ 289 (454)
=-|+|||+||--++++++.++..
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs 284 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAAS 284 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhc
Confidence 35999999999999887766543
No 80
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=29.35 E-value=3.8e+02 Score=25.99 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=53.0
Q ss_pred CHH-HHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchH---HHHHHHhhcCC-CCcEEEEeeccCCCCCccccccccc
Q 043823 125 TEK-ESHEILSYAFENGINILDSSEAYPIPMKKETQGKTD---LYIASWLKSQP-RDKVIIATKVSGYSERSSFLRDNAK 199 (454)
Q Consensus 125 ~~~-~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE---~~lG~aL~~~~-R~~v~I~TK~~~~~~~~~~~~~~~~ 199 (454)
+++ +..++.+.|.++|..|+=|+..|+. .|.+. +++-+.++... .++ +.-|..+--.
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~------~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGGIr---------- 205 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVP------VNATLEAARIMLEVIRDMGVAKT--VGFKPAGGVR---------- 205 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCC------CCCCHHHHHHHHHHHHhcccCCC--eeEEccCCCC----------
Confidence 344 4778899999999999999999973 23333 34444443211 122 4445432222
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCccc
Q 043823 200 VLRVDAANIKESVEKSLKRLNTDYID 225 (454)
Q Consensus 200 ~~~~s~~~i~~~le~SL~rLg~d~iD 225 (454)
+.+....-++.--+.||.+|++
T Consensus 206 ----t~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 206 ----TAEDAAQYLALADEILGADWAD 227 (257)
T ss_pred ----CHHHHHHHHHHHHHHhChhhcC
Confidence 6788899999999999998876
No 81
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=29.01 E-value=5.6e+02 Score=25.09 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHH--cCccc-EEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELID--EGKVR-YIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~--~G~Ir-~iGvSn 278 (454)
.++.+.+++-++..++ .-+|-+++-.-.. +. ...+.+|-.+.++..++ .|++. ..|++.
T Consensus 17 ~iD~~~l~~lv~~~~~----~Gv~gi~v~GstG------E~--------~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~ 78 (294)
T TIGR02313 17 DIDEEALRELIEFQIE----GGSHAISVGGTSG------EP--------GSLTLEERKQAIENAIDQIAGRIPFAPGTGA 78 (294)
T ss_pred CcCHHHHHHHHHHHHH----cCCCEEEECccCc------cc--------ccCCHHHHHHHHHHHHHHhCCCCcEEEECCc
Confidence 4577888888877776 3455666655331 11 23556676666666554 56543 468988
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHh----hhcccCC-CeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVE----VCHPKNC-NIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~----~c~~~~~-gi~via~s 335 (454)
.+..+..++.+.+...|.. -.++..+|. +.+ .++++++ .|. .. ++.++.|.
T Consensus 79 ~~t~~ai~~a~~A~~~Gad-~v~v~pP~y-~~~--~~~~l~~~f~~ia~--a~~~lpv~iYn 134 (294)
T TIGR02313 79 LNHDETLELTKFAEEAGAD-AAMVIVPYY-NKP--NQEALYDHFAEVAD--AVPDFPIIIYN 134 (294)
T ss_pred chHHHHHHHHHHHHHcCCC-EEEEcCccC-CCC--CHHHHHHHHHHHHH--hccCCCEEEEe
Confidence 8877777778888887754 334444443 222 2345554 455 55 78888884
No 82
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=28.37 E-value=5.2e+02 Score=24.83 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc--C-cccEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE--G-KVRYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~--G-~Ir~iGvSn 278 (454)
.++.+.+++.++..++. |++. +++-.-.. +. .....+|-.+.++..++. | .--..|++.
T Consensus 14 ~iD~~~~~~~i~~l~~~-Gv~g---i~~~GstG------E~--------~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~ 75 (281)
T cd00408 14 EVDLDALRRLVEFLIEA-GVDG---LVVLGTTG------EA--------PTLTDEERKEVIEAVVEAVAGRVPVIAGVGA 75 (281)
T ss_pred CcCHHHHHHHHHHHHHc-CCCE---EEECCCCc------cc--------ccCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 45778888888777774 5544 44443221 10 224445555555555443 2 334688988
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhh----hcccCCCeeEEeccc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEV----CHPKNCNIGLLAYSP 336 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~----c~~~~~gi~via~sp 336 (454)
.+.....++.+.+...|...+.+..-.|... .+++++++ |. .-++.++.|..
T Consensus 76 ~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~----~~~~~~~~~~~ia~--~~~~pi~iYn~ 131 (281)
T cd00408 76 NSTREAIELARHAEEAGADGVLVVPPYYNKP----SQEGIVAHFKAVAD--ASDLPVILYNI 131 (281)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCcCCCC----CHHHHHHHHHHHHh--cCCCCEEEEEC
Confidence 8887777778888887764343333233322 23445544 44 56788887743
No 83
>PRK08609 hypothetical protein; Provisional
Probab=28.04 E-value=8.1e+02 Score=26.65 Aligned_cols=156 Identities=11% Similarity=0.130 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHh------hc-CCCCcEEEEeeccCCCCCccccccccccc
Q 043823 129 SHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWL------KS-QPRDKVIIATKVSGYSERSSFLRDNAKVL 201 (454)
Q Consensus 129 a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL------~~-~~R~~v~I~TK~~~~~~~~~~~~~~~~~~ 201 (454)
..++++.|.+.|+.+|=.++++.... ...|.+...+-..+ +. ++.=+|++..=+..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~--~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i--------------- 413 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLK--VANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDI--------------- 413 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCcc--ccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEee---------------
Confidence 56699999999999998888863210 00122333333222 21 11112333222211
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCC---
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSN--- 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn--- 278 (454)
.++....-.++.|+. .||+ +.-+|++- ..+.+++++.+.++.+.|.+.-||=-.
T Consensus 414 --~~~g~~d~~~~~L~~--~D~v-I~SvH~~~------------------~~~~~~~~~~l~~a~~~~~~dILaHpd~rl 470 (570)
T PRK08609 414 --LPDGSLDYDDEVLAE--LDYV-IAAIHSSF------------------SQSEEEIMKRLENACRNPYVRLIAHPTGRL 470 (570)
T ss_pred --cCCcchhhcHHHHHh--hCEE-EEEeecCC------------------CCCHHHHHHHHHHHhcCCCceEEECCCccc
Confidence 111112222334443 5676 77788642 123567788899998888877665322
Q ss_pred ---C--ChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeE
Q 043823 279 ---E--TSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGL 331 (454)
Q Consensus 279 ---~--~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~v 331 (454)
. -...++++++.+...|. ++|+.-+.+.. .....++..|. +.|+.+
T Consensus 471 i~~~~~~~~d~~~i~~~a~~~G~----~lEINa~~~r~-~~~~~~~~~~~--e~Gv~i 521 (570)
T PRK08609 471 IGRRDGYDVNIDQLIELAKETNT----ALELNANPNRL-DLSAEHLKKAQ--EAGVKL 521 (570)
T ss_pred cccCCCchHHHHHHHHHHHHhCC----EEEEcCCcccc-CccHHHHHHHH--HcCCEE
Confidence 1 13456777888777653 23333222221 23467888999 888854
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=27.85 E-value=5.8e+02 Score=29.08 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc--CcccEEeeCCCCh
Q 043823 204 DAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE--GKVRYIGVSNETS 281 (454)
Q Consensus 204 s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~--G~Ir~iGvSn~~~ 281 (454)
+.+.|++-++...........-+|+|...+. . ..+.+.+|.+..++ ..+++|-++|...
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~------------------L-T~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHM------------------L-TNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhh------------------C-CHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 3466666666554333334557888887662 1 23567888888877 5899999999754
No 85
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.75 E-value=5.1e+02 Score=24.26 Aligned_cols=61 Identities=23% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCC-CeEEee-----------cCCCHHHHHHHHHHcccCCCCCCHHHHHHHHH
Q 043823 383 EMAKKHGLTPVQLALGFVRDRPF-MTSSII-----------GATSVEQLKEDIDAFFTAERPLPQEVMADVED 443 (454)
Q Consensus 383 ~ia~~~g~s~aqvaL~w~L~~~~-v~~vI~-----------G~~~~~~l~enl~a~~~~~~~L~~e~~~~L~~ 443 (454)
++|-..|.+..++.=---..++. +++||+ |..+.-|...|..+-.+....|++||...+++
T Consensus 70 ~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rn 142 (268)
T KOG4175|consen 70 RRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRN 142 (268)
T ss_pred HHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHH
Confidence 34444566655543222233332 566665 44455566666655444334788888777654
No 86
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=27.49 E-value=1.7e+02 Score=28.23 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=50.5
Q ss_pred CchHHHHHHHhhc---CCCCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhh
Q 043823 160 GKTDLYIASWLKS---QPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYV 236 (454)
Q Consensus 160 G~sE~~lG~aL~~---~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~ 236 (454)
...|+..|+.|.. -|+.-++|++-++++..+-.+. .++.+-..|.++|+. |++.|.+-|. --+|+.+.
T Consensus 161 ~~~e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG~RF~yt-----~Yd~s~~~I~~sIe~-lDk~gM~iie---t~~pdaf~ 231 (296)
T KOG3086|consen 161 PSVEQCYGKLLSKYIKDPSNLFVVSSDFCHWGRRFSYT-----YYDHSQGPIYESIEN-LDKQGMKIIE---TLDPDAFS 231 (296)
T ss_pred hHHHHHHHHHHHHHhcCccceEEEeccccccccccccc-----cccCCCchHHHHHHH-HHHhhhhhhh---cCChHHHH
Confidence 4578888888874 3677788888888764432221 123344556666543 4555544333 22333321
Q ss_pred ---hcccccccccCCCCCCCCHHHHHHHHHHHHHcCc
Q 043823 237 ---ALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGK 270 (454)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~ 270 (454)
...+... =..-|+.-++.|+..+++.|-
T Consensus 232 ~YLk~~~NTI------CGr~PI~v~l~a~~~~~~~~~ 262 (296)
T KOG3086|consen 232 EYLKKTQNTI------CGRHPISVILSALSHMRKAGP 262 (296)
T ss_pred HHHHHhCCcc------ccCccHHHHHHHHHHHHhcCC
Confidence 1111100 023456666777777776654
No 87
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=27.20 E-value=5.4e+02 Score=25.62 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHHcCccc-EEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCe
Q 043823 251 PSVPIVEQLRAFKELIDEGKVR-YIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNI 329 (454)
Q Consensus 251 ~~~~~~e~~~aL~~L~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi 329 (454)
.+.+.+|..+.|+++.+.=+|- -||=|+.....-+-+..++......++-......++ .-+.+.+++. ++|=
T Consensus 180 ~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanldl-----Dy~~ia~AA~--ky~H 252 (403)
T COG2069 180 KDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDL-----DYERIAEAAL--KYDH 252 (403)
T ss_pred cCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecccccc-----CHHHHHHHHH--hcCc
Confidence 4578899999999988876654 467777665444444444443333334333333221 1246778888 8888
Q ss_pred eEEecccccC
Q 043823 330 GLLAYSPLGG 339 (454)
Q Consensus 330 ~via~spL~~ 339 (454)
.|++|+++.-
T Consensus 253 ~VLswt~~D~ 262 (403)
T COG2069 253 VVLSWTQMDV 262 (403)
T ss_pred eEEEeeccCh
Confidence 8999888753
No 88
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=26.96 E-value=2.3e+02 Score=26.85 Aligned_cols=79 Identities=25% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHHHHHHcCCCCEEEEe--cccccccccc--chhhhHhhhcccCCCeeEEecccccCCcCCCccCCCCchhhcccccccC
Q 043823 287 FVHAAEVEGLPKIVSIQ--NSYSLLVRCR--FEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYLDINSEAARKGRLNLF 362 (454)
Q Consensus 287 ~~~~~~~~~~~~~~~vQ--~~ynll~~~~--~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~r~~~~ 362 (454)
+...+...|.. +.++- -+||.++... ...++.++++ .-|-.-+.+.||..|.--+...+
T Consensus 54 vka~Aek~Gl~-IvSINAlypFn~wt~~~~a~a~~la~yA~--acGA~aLvlcPlNd~s~~~~~vr-------------- 116 (272)
T COG4130 54 VKALAEKAGLT-IVSINALYPFNEWTEERVAEARGLADYAA--ACGAKALVLCPLNDGSWPGTAVR-------------- 116 (272)
T ss_pred HHHHHHHcCcE-EEEeeccccccccChHHHHHHHHHHHHHH--hcCCceEEEEeccCCCCCCcccc--------------
Confidence 34445555543 33322 1555555422 1267899999 88888888999988632221111
Q ss_pred cchhhhhcchHHHHHHHHHHHHHHHcCC
Q 043823 363 PGYMERYNTSLAREATIKYIEMAKKHGL 390 (454)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 390 (454)
.+.....+.+|+.|.+++|+
T Consensus 117 --------~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 117 --------REDLVEALKALKPILDEYGI 136 (272)
T ss_pred --------hHHHHHHHHHhhHHHHHhCc
Confidence 12344566677777777774
No 89
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.95 E-value=1.8e+02 Score=28.91 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHH---HHHHHHHHHHcCcccEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVE---QLRAFKELIDEGKVRYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e---~~~aL~~L~~~G~Ir~iGvSn 278 (454)
.++.+.+++-++.-++ .-+|=+++-.-.. +. .....+| ++++..+..+...--.+|++.
T Consensus 25 ~iD~~~l~~lv~~li~----~Gv~Gi~v~GstG------E~--------~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~ 86 (309)
T cd00952 25 TVDLDETARLVERLIA----AGVDGILTMGTFG------EC--------ATLTWEEKQAFVATVVETVAGRVPVFVGATT 86 (309)
T ss_pred CcCHHHHHHHHHHHHH----cCCCEEEECcccc------cc--------hhCCHHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence 3566767776666655 3455555544321 11 1233444 444444444322335689998
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcc--cCC-CeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHP--KNC-NIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~--~~~-gi~via~s 335 (454)
.+..+..++.+.+...|...+.++.-.|...+ +++++++.+. ... ++.++.|.
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~----~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLPLD----VDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCC----HHHHHHHHHHHHHhCCCCcEEEEc
Confidence 88888888888888887654544443343322 3455554331 156 68999993
No 90
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.63 E-value=7.3e+02 Score=25.66 Aligned_cols=62 Identities=19% Similarity=0.076 Sum_probs=35.9
Q ss_pred cccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHH-------HHcCcccEEeeCCCChhHHHHHHHHHHHcC
Q 043823 223 YIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKEL-------IDEGKVRYIGVSNETSYGVMEFVHAAEVEG 295 (454)
Q Consensus 223 ~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L-------~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~ 295 (454)
.+.++.+|.|+.. .. .....+.++++|.+. ++.++|--||-++.....+.++.+..+..|
T Consensus 116 ~~~vi~v~tpgf~-----g~--------~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~G 182 (428)
T cd01965 116 DFPVVYASTPSFK-----GS--------HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFG 182 (428)
T ss_pred CCeEEEeeCCCCC-----Cc--------HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcC
Confidence 4668888888631 00 011233444444432 234678888877765555677777777776
Q ss_pred CC
Q 043823 296 LP 297 (454)
Q Consensus 296 ~~ 297 (454)
..
T Consensus 183 l~ 184 (428)
T cd01965 183 LE 184 (428)
T ss_pred CC
Confidence 53
No 91
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=26.60 E-value=2.2e+02 Score=31.32 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeC-CCChh
Q 043823 204 DAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVS-NETSY 282 (454)
Q Consensus 204 s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvS-n~~~~ 282 (454)
+.++++.+ ..+|.|+|-+++...-. ...+.+.....+.+....-.|..+||- |-+.+
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~Sp-----------------R~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~ 69 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSP-----------------RFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAK 69 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCC-----------------CCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHH
Confidence 34555555 45899999998655422 123344413333333333357789995 65555
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccc
Q 043823 283 GVMEFVHAAEVEGLPKIVSIQNSY 306 (454)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~vQ~~y 306 (454)
.+. +.+... .++++|++-
T Consensus 70 ~i~---~~~~~~---~ld~vQLHG 87 (610)
T PRK13803 70 AML---KFSKKN---GIDFVQLHG 87 (610)
T ss_pred HHH---HHHHhc---CCCEEEECC
Confidence 444 444332 589999763
No 92
>PRK09061 D-glutamate deacylase; Validated
Probab=26.48 E-value=8.1e+02 Score=26.13 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCCCHHH
Q 043823 128 ESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAAN 207 (454)
Q Consensus 128 ~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~ 207 (454)
+..++++.|++.|+..|=+...|- .+.+...+-+.++...+-+..|........ ..++..
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~-------p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~-------------~~~~~~ 229 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYA-------PGTGHKEYLELARLAARAGVPTYTHVRYLS-------------NVDPRS 229 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccC-------CCCCHHHHHHHHHHHHHcCCEEEEEecCcc-------------cCCchh
Confidence 367788889999999998766673 233444555555533344566666642110 001222
Q ss_pred HHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCC
Q 043823 208 IKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNET 280 (454)
Q Consensus 208 i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~ 280 (454)
...++++.++....--.-+...|--.. ......+.++.+++++++|.--..-++-|.
T Consensus 230 e~~av~~~i~lA~~~G~rv~IsHlss~----------------g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 230 SVDAYQELIAAAAETGAHMHICHVNST----------------SLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeccC----------------CcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 233444444433322234677776431 112357889999999999975555555444
No 93
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.45 E-value=6e+02 Score=24.61 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc--Cc-ccEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE--GK-VRYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~--G~-Ir~iGvSn 278 (454)
.++.+.+++.++..++ - -+|=+++-.-.. +. ...+.+|-.+.++..++. |+ --..|++.
T Consensus 15 ~iD~~~~~~~i~~l~~-~---Gv~Gi~~~GstG------E~--------~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 76 (285)
T TIGR00674 15 SVDFAALEKLIDFQIE-N---GTDAIVVVGTTG------ES--------PTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS 76 (285)
T ss_pred CcCHHHHHHHHHHHHH-c---CCCEEEECccCc------cc--------ccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 4677888888877665 3 455555543221 10 234556656666555553 54 35689988
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHh----hhcccCCCeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVE----VCHPKNCNIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~----~c~~~~~gi~via~s 335 (454)
.+..+..++.+.++..|...+ ++..+|.. .. .++++++ .|. ..++.|+.|.
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v-~v~pP~y~-~~--~~~~i~~~~~~i~~--~~~~pi~lYn 131 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGF-LVVTPYYN-KP--TQEGLYQHFKAIAE--EVDLPIILYN 131 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEE-EEcCCcCC-CC--CHHHHHHHHHHHHh--cCCCCEEEEE
Confidence 888887788888888775433 33334332 11 2345554 344 5678888774
No 94
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=26.41 E-value=6.1e+02 Score=24.64 Aligned_cols=112 Identities=15% Similarity=0.237 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHH--cCc-ccEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELID--EGK-VRYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~--~G~-Ir~iGvSn 278 (454)
.++.+.+++-++.-++ .-+|-+++-.-..+. .....+|-.+.++..++ .|+ --..|++.
T Consensus 18 ~iD~~~l~~~i~~l~~----~Gv~gi~~~Gs~GE~--------------~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 79 (292)
T PRK03170 18 SVDFAALRKLVDYLIA----NGTDGLVVVGTTGES--------------PTLTHEEHEELIRAVVEAVNGRVPVIAGTGS 79 (292)
T ss_pred CcCHHHHHHHHHHHHH----cCCCEEEECCcCCcc--------------ccCCHHHHHHHHHHHHHHhCCCCcEEeecCC
Confidence 4677778877777776 456666655432111 23455565555555555 343 45689988
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcc--cCCCeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHP--KNCNIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~--~~~gi~via~s 335 (454)
.+.....++.+.++..|...+.+..-.|... .+++++++.+. ...++.++-|.
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~----~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNKP----TQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCCC----CHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8887777888888887754333332223222 23455554321 15578888884
No 95
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=26.39 E-value=5.7e+02 Score=24.35 Aligned_cols=157 Identities=12% Similarity=0.068 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchH-HHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCC
Q 043823 125 TEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTD-LYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRV 203 (454)
Q Consensus 125 ~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE-~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~ 203 (454)
+.++..+.++.+.+.|++.|-.--.-. ...+ +.+ +++++.-.+++.|.-.... .+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~--------~~~d~~~v-~~vr~~~g~~~~l~vDan~---------------~~ 140 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRD--------PARDVAVV-AALREAVGDDAELRVDANR---------------GW 140 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC--------HHHHHHHH-HHHHHhcCCCCEEEEeCCC---------------Cc
Confidence 456677788888999999987642110 0111 222 2333322335555555421 12
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCccc-EEeeCCCChh
Q 043823 204 DAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVR-YIGVSNETSY 282 (454)
Q Consensus 204 s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir-~iGvSn~~~~ 282 (454)
+.+...+-+ +.|+.+ ++.++..|-. .+-++.+.+|++.-.|. ..|=+-++.+
T Consensus 141 ~~~~a~~~~-~~l~~~-----~i~~iEeP~~---------------------~~d~~~~~~l~~~~~ipia~dE~~~~~~ 193 (265)
T cd03315 141 TPKQAIRAL-RALEDL-----GLDYVEQPLP---------------------ADDLEGRAALARATDTPIMADESAFTPH 193 (265)
T ss_pred CHHHHHHHH-HHHHhc-----CCCEEECCCC---------------------cccHHHHHHHHhhCCCCEEECCCCCCHH
Confidence 444433332 333443 4555565531 12256777787776555 3344555555
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCC
Q 043823 283 GVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGG 340 (454)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G 340 (454)
++.++++. ..++++|+..+..---..-..+...|+ ++|+.++..+.+.++
T Consensus 194 ~~~~~i~~------~~~d~v~~k~~~~GGi~~~~~~~~~A~--~~gi~~~~~~~~~s~ 243 (265)
T cd03315 194 DAFRELAL------GAADAVNIKTAKTGGLTKAQRVLAVAE--ALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHh------CCCCEEEEecccccCHHHHHHHHHHHH--HcCCcEEecCccchH
Confidence 55443332 247778876443321011256888899 999999886555443
No 96
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.24 E-value=5.9e+02 Score=24.44 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHcCcccEEeeCCC----ChhHHHHHHHHHHHcCCCCEEEEeccccccccccc-hhhhHhhhcccCC
Q 043823 253 VPIVEQLRAFKELIDEGKVRYIGVSNE----TSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRF-EVDLVEVCHPKNC 327 (454)
Q Consensus 253 ~~~~e~~~aL~~L~~~G~Ir~iGvSn~----~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~-~~~ll~~c~~~~~ 327 (454)
.+.+.+.+..+++.+.| +..|.++.- .+.++.+++...+..- +.+ -+.+.|+.-+.... -...+..+ +.
T Consensus 140 ~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~~-~i~l~~H~Hn~~GlA~An~laAi---~a 213 (268)
T cd07940 140 TDLDFLIEVVEAAIEAG-ATTINIPDTVGYLTPEEFGELIKKLKENV-PNI-KVPISVHCHNDLGLAVANSLAAV---EA 213 (268)
T ss_pred CCHHHHHHHHHHHHHcC-CCEEEECCCCCCCCHHHHHHHHHHHHHhC-CCC-ceeEEEEecCCcchHHHHHHHHH---Hh
Confidence 45667777777777777 567777543 5677777777776532 221 12334443332111 11223333 46
Q ss_pred CeeEEecccccCCcCCC
Q 043823 328 NIGLLAYSPLGGGSLTG 344 (454)
Q Consensus 328 gi~via~spL~~G~Ltg 344 (454)
|+.++--+-.+.|--+|
T Consensus 214 G~~~iD~s~~GlG~~aG 230 (268)
T cd07940 214 GARQVECTINGIGERAG 230 (268)
T ss_pred CCCEEEEEeeccccccc
Confidence 88777766666664333
No 97
>PRK07328 histidinol-phosphatase; Provisional
Probab=26.24 E-value=3.1e+02 Score=26.43 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHH----HHHHHHHcCcccEEeeCC----C-
Q 043823 209 KESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLR----AFKELIDEGKVRYIGVSN----E- 279 (454)
Q Consensus 209 ~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~----aL~~L~~~G~Ir~iGvSn----~- 279 (454)
...+++.|++-..||+ |.-+|+.+.+.-.... ....|. ....+++++ .+.++++.|.+.-+|=-. +
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~---~~~~~~-~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~ 168 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPD---FVAEYE-ERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFG 168 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChh---HHHHHh-cCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcC
Confidence 4555566777777877 8888986421000000 000111 123344443 577788888877776221 1
Q ss_pred ------ChhHHHHHHHHHHHcCCCCEEEEec--cccccccccchhhhHhhhcccCCCeeEE
Q 043823 280 ------TSYGVMEFVHAAEVEGLPKIVSIQN--SYSLLVRCRFEVDLVEVCHPKNCNIGLL 332 (454)
Q Consensus 280 ------~~~~l~~~~~~~~~~~~~~~~~vQ~--~ynll~~~~~~~~ll~~c~~~~~gi~vi 332 (454)
....+.++++.+...|.. +.+|-. .+..-+. .+...++..|+ +.|+.++
T Consensus 169 ~~~~~~~~~~~~~il~~~~~~g~~-lEiNt~~~r~~~~~~-yp~~~il~~~~--~~g~~it 225 (269)
T PRK07328 169 HRPREDLTELYEEALDVIAAAGLA-LEVNTAGLRKPVGEI-YPSPALLRACR--ERGIPVV 225 (269)
T ss_pred CCCchhHHHHHHHHHHHHHHcCCE-EEEEchhhcCCCCCC-CCCHHHHHHHH--HcCCCEE
Confidence 123446778888877643 444432 1111122 23457889999 8888643
No 98
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.64 E-value=1.1e+02 Score=29.40 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCCCH
Q 043823 126 EKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDA 205 (454)
Q Consensus 126 ~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~ 205 (454)
+....+.++.+-+.|++.++-++.+- .-+++-.-++++......+.+.|-++.... ......++
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti--------~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~--------~~~~~~~~ 146 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTI--------DLPEEERLRLIRKAKEEGFKVLSEVGKKDP--------ESDFSLDP 146 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS-----------HHHHHHHHHHHCCTTSEEEEEES-SSH--------HHHTT--C
T ss_pred cChHHHHHHHHHHcCCCEEEecCCce--------eCCHHHHHHHHHHHHHCCCEEeecccCCCc--------hhcccCCH
Confidence 44567789999999999999998874 335555666676555566889998874422 11123356
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEEeC
Q 043823 206 ANIKESVEKSLKRLNTDYIDLLQIHW 231 (454)
Q Consensus 206 ~~i~~~le~SL~rLg~d~iDl~~lH~ 231 (454)
+.+.+.+++-|+. | .|.+.+-.
T Consensus 147 ~~~i~~~~~dLeA-G---A~~ViiEa 168 (244)
T PF02679_consen 147 EELIEQAKRDLEA-G---ADKVIIEA 168 (244)
T ss_dssp CHHHHHHHHHHHH-T---ECEEEE--
T ss_pred HHHHHHHHHHHHC-C---CCEEEEee
Confidence 7777888877776 4 45556654
No 99
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=25.64 E-value=23 Score=31.81 Aligned_cols=19 Identities=47% Similarity=0.607 Sum_probs=16.1
Q ss_pred CCCceEEecCCcccCCCCC
Q 043823 6 PSRDFVVIRPPVLSAPSLG 24 (454)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (454)
.+.|.|||.|||++..|+.
T Consensus 85 ~~~d~vv~DPPFl~~ec~~ 103 (162)
T PF10237_consen 85 GKFDVVVIDPPFLSEECLT 103 (162)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3789999999999888763
No 100
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.54 E-value=5.2e+02 Score=24.77 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEE-EeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCCh
Q 043823 203 VDAANIKESVEKSLKRLNTDYIDLLQ-IHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNETS 281 (454)
Q Consensus 203 ~s~~~i~~~le~SL~rLg~d~iDl~~-lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~ 281 (454)
.+.+.+.+..++.+ .-|-|+||+=- --+|+. .........+.+..+++.+++.-.+ -|-|-++++
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~------------~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~ 86 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGA------------EPVSVEEELERVIPVLRALAGEPDV-PISVDTFNA 86 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCC------------CcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcH
Confidence 35666666665554 67899999853 344432 0011112234466677777766333 277888887
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEeccc
Q 043823 282 YGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSP 336 (454)
Q Consensus 282 ~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~sp 336 (454)
+-+++.++. +.+ + + +..+... ...++++.++ ++|..++.+..
T Consensus 87 ~v~~aaL~~----g~~-i-I--Ndis~~~---~~~~~~~l~~--~~~~~vV~m~~ 128 (258)
T cd00423 87 EVAEAALKA----GAD-I-I--NDVSGGR---GDPEMAPLAA--EYGAPVVLMHM 128 (258)
T ss_pred HHHHHHHHh----CCC-E-E--EeCCCCC---CChHHHHHHH--HcCCCEEEECc
Confidence 655444443 311 2 2 2222221 1257889999 89998888754
No 101
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=25.54 E-value=4.8e+02 Score=26.54 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=0.0
Q ss_pred cCceeeccccC--------CCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEE
Q 043823 110 ISEITLGTMTF--------GEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIA 181 (454)
Q Consensus 110 Vs~lglGt~~~--------g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~ 181 (454)
|.+|.+|.-++ |...+.+++.+.++.+-+.|+.-+-.==.||
T Consensus 114 ~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~G------------------------------ 163 (370)
T PRK06294 114 INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYG------------------------------ 163 (370)
T ss_pred CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC------------------------------
Q ss_pred eeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeC-----------------Cchhhhccccccc
Q 043823 182 TKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHW-----------------PDRYVALFGEYMY 244 (454)
Q Consensus 182 TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~-----------------pd~~~~~~~~~~~ 244 (454)
.+.. +.+.+++.++..++ |+.++|.+|.+.- |+
T Consensus 164 ---lPgq---------------t~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~----------- 213 (370)
T PRK06294 164 ---LPTQ---------------SLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIAD----------- 213 (370)
T ss_pred ---CCCC---------------CHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcC-----------
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCC
Q 043823 245 DYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNE 279 (454)
Q Consensus 245 ~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~ 279 (454)
++...+-...+.+.|.+.|. .++++|||
T Consensus 214 ------~~~~~~~~~~~~~~L~~~Gy-~~yeis~f 241 (370)
T PRK06294 214 ------EEILAEMSLAAEELLTSQGF-TRYELASY 241 (370)
T ss_pred ------HHHHHHHHHHHHHHHHHcCC-Ceeeeeee
No 102
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=25.45 E-value=1.9e+02 Score=28.51 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHH
Q 043823 209 KESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFV 288 (454)
Q Consensus 209 ~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~ 288 (454)
+..+-+.|.++|+++|++-.++.|. -.....+.++.+..+.+...++...+. .+...++.++
T Consensus 28 k~~ia~~L~~~Gv~~IEvgsf~~p~-----------------~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~ 89 (287)
T PRK05692 28 KIALIDRLSAAGLSYIEVASFVSPK-----------------WVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAAL 89 (287)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCcc-----------------cccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHH
Q ss_pred HHHHHcCCCCEEEEeccccccccccchh-------------hhHhhhcccCCCeeEEec
Q 043823 289 HAAEVEGLPKIVSIQNSYSLLVRCRFEV-------------DLVEVCHPKNCNIGLLAY 334 (454)
Q Consensus 289 ~~~~~~~~~~~~~vQ~~ynll~~~~~~~-------------~ll~~c~~~~~gi~via~ 334 (454)
+. .++.+.+-++.-+...... +.+++++ ++|+.+.++
T Consensus 90 ~~-------g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak--~~g~~v~~~ 139 (287)
T PRK05692 90 AA-------GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAK--QAGVRVRGY 139 (287)
T ss_pred Hc-------CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH--HcCCEEEEE
No 103
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=25.36 E-value=1.6e+02 Score=23.16 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 043823 372 SLAREATIKYIEMAKKHGLTPVQLALGF 399 (454)
Q Consensus 372 ~~~~~~~~~l~~ia~~~g~s~aqvaL~w 399 (454)
+..++.+..|.++|++.|++..++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5667888999999999999999987543
No 104
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.04 E-value=3.1e+02 Score=26.57 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCC-cEEEEeeccCCCCCcccccccccccCC
Q 043823 125 TEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRD-KVIIATKVSGYSERSSFLRDNAKVLRV 203 (454)
Q Consensus 125 ~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~-~v~I~TK~~~~~~~~~~~~~~~~~~~~ 203 (454)
+.++..+..+.+.+.|+..||.--...+.......+...+.+.+.++...+. ++-|..|+... .
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------------~ 173 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------------F 173 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------------C
Confidence 5678888899999999999986433211111111123445666665543221 56788898642 1
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEeC
Q 043823 204 DAANIKESVEKSLKRLNTDYIDLLQIHW 231 (454)
Q Consensus 204 s~~~i~~~le~SL~rLg~d~iDl~~lH~ 231 (454)
+.+++.+.++ .|+..|. |.+.+|+
T Consensus 174 ~~~~~~~~a~-~l~~~Ga---d~i~~~~ 197 (289)
T cd02810 174 DLEDIVELAK-AAERAGA---DGLTAIN 197 (289)
T ss_pred CHHHHHHHHH-HHHHcCC---CEEEEEc
Confidence 3444444333 4566664 5555564
No 105
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.03 E-value=4.6e+02 Score=26.94 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=64.7
Q ss_pred EEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc-Cc---ccEEeeC--CCChhHHHHHHHHHHHcCCC---
Q 043823 227 LQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE-GK---VRYIGVS--NETSYGVMEFVHAAEVEGLP--- 297 (454)
Q Consensus 227 ~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~-G~---Ir~iGvS--n~~~~~l~~~~~~~~~~~~~--- 297 (454)
+-||.|+... ....+ -.....+++++++++.+..++ |+ +-|+=+. |-+.++..++.+.++....+
T Consensus 232 iSLHA~~~e~--R~~lm----Pin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l 305 (371)
T PRK14461 232 ISLHAPDDAL--RSELM----PVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPL 305 (371)
T ss_pred EEeCCCCHHH--HHHhc----CcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCC
Confidence 6799997522 00000 011346899999999998764 33 2233333 55667777777776532101
Q ss_pred CEEEEeccccccccccc----h---hhhHhhhcccCCCeeEEecccccCC
Q 043823 298 KIVSIQNSYSLLVRCRF----E---VDLVEVCHPKNCNIGLLAYSPLGGG 340 (454)
Q Consensus 298 ~~~~vQ~~ynll~~~~~----~---~~ll~~c~~~~~gi~via~spL~~G 340 (454)
.+.++-++||......+ . ..+.+.++ ++||.+......|.-
T Consensus 306 ~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~--~~gi~vtiR~s~G~D 353 (371)
T PRK14461 306 LVHVNLIPWNPVPGTPLGRSERERVTTFQRILT--DYGIPCTVRVERGVE 353 (371)
T ss_pred ceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHH--HCCceEEEeCCCCcC
Confidence 47889999998643211 1 34566677 899999988877653
No 106
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.95 E-value=6.5e+02 Score=24.56 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc--Ccc-cEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE--GKV-RYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~--G~I-r~iGvSn 278 (454)
.++.+.+++.++..++ -| .+|-+++-.-.. +. .....+|-.+.++..++. |++ -.+|++.
T Consensus 17 ~iD~~~~~~~i~~~i~-~G--~v~gi~~~GstG------E~--------~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~ 79 (290)
T TIGR00683 17 TINEKGLRQIIRHNID-KM--KVDGLYVGGSTG------EN--------FMLSTEEKKEIFRIAKDEAKDQIALIAQVGS 79 (290)
T ss_pred CcCHHHHHHHHHHHHh-CC--CcCEEEECCccc------cc--------ccCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 4577888888887655 22 266676665431 11 124455555555545443 443 4589988
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhccc--CC-CeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPK--NC-NIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~--~~-gi~via~s 335 (454)
.+..+..++.+.++..|...+.++.-.|... .+++++++.+.- .. ++.++.|.
T Consensus 80 ~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~----~~~~i~~yf~~v~~~~~~lpv~lYn 135 (290)
T TIGR00683 80 VNLKEAVELGKYATELGYDCLSAVTPFYYKF----SFPEIKHYYDTIIAETGGLNMIVYS 135 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC----CHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 8888888888888888765555544444332 234555543311 44 68888884
No 107
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=24.77 E-value=3.7e+02 Score=23.47 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=43.5
Q ss_pred CCCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhC--CCcccEEEEeCCchhhhcccccccccCCCCC
Q 043823 174 PRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLN--TDYIDLLQIHWPDRYVALFGEYMYDYSKWRP 251 (454)
Q Consensus 174 ~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg--~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~ 251 (454)
+|=-+.|+-|++. ......|++.+.++++.+. +...|++++.....
T Consensus 46 ~RlG~sVSKKvg~---------------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~----------------- 93 (138)
T PRK00730 46 CKVGITVSKKFGK---------------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNS----------------- 93 (138)
T ss_pred ceEEEEEeccccc---------------chhHHHHHHHHHHHHHHhhcccCCceEEEEecccc-----------------
Confidence 3555777777642 2256788888888888763 45789999998763
Q ss_pred CCCHHHHHHHHHHHHHc
Q 043823 252 SVPIVEQLRAFKELIDE 268 (454)
Q Consensus 252 ~~~~~e~~~aL~~L~~~ 268 (454)
..+..++...|.++.++
T Consensus 94 ~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 94 QPDFLKLLQDFLQQIPE 110 (138)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 25566777777766654
No 108
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=24.43 E-value=5.8e+02 Score=24.41 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHHHHcCcccEEee-CCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCC
Q 043823 262 FKELIDEGKVRYIGV-SNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGG 340 (454)
Q Consensus 262 L~~L~~~G~Ir~iGv-Sn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G 340 (454)
|.+..++|+. -+|+ ...+... +.+.+...|+ ++.++-++.+.++... -..++..|+ ..|+.++..-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~---~~e~~~~~g~-D~v~iDlEH~~~~~~~-~~~~~~a~~--~~g~~~~VRv~~~~- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPY---AAEICAGAGF-DWLLIDGEHAPNDVRT-ILSQLQALA--PYPSSPVVRPAIGD- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcH---HHHHHHhcCC-CEEEEeccCCCCCHHH-HHHHHHHHH--hcCCCcEEECCCCC-
Confidence 3445556775 3444 2333333 3344444453 5777777888776522 234666666 66776666533111
Q ss_pred cCCCccCCCCchhhcccccccCcchhhhhcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeEEeecCCCHHHHH
Q 043823 341 SLTGKYLDINSEAARKGRLNLFPGYMERYNTSLAREATIKYIEMAKKHGLTPVQLALGFVRDRPFMTSSIIGATSVEQLK 420 (454)
Q Consensus 341 ~Ltg~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~L~~~~v~~vI~G~~~~~~l~ 420 (454)
...++.+|..+.-..++|-..++++++
T Consensus 74 -----------------------------------------------------~~~i~~~Ld~Ga~gIivP~v~s~e~a~ 100 (249)
T TIGR02311 74 -----------------------------------------------------PVLIKQLLDIGAQTLLVPMIETAEQAE 100 (249)
T ss_pred -----------------------------------------------------HHHHHHHhCCCCCEEEecCcCCHHHHH
Confidence 114677777776667888888888888
Q ss_pred HHHHHccc
Q 043823 421 EDIDAFFT 428 (454)
Q Consensus 421 enl~a~~~ 428 (454)
+.+++..+
T Consensus 101 ~~v~~~~y 108 (249)
T TIGR02311 101 AAVAATRY 108 (249)
T ss_pred HHHHHcCC
Confidence 88887765
No 109
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=23.86 E-value=2.9e+02 Score=29.12 Aligned_cols=109 Identities=11% Similarity=0.044 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc-Cccc--------
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE-GKVR-------- 272 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~-G~Ir-------- 272 (454)
.++.++... +-+.|.++|++.|+++ |.... .. .- ..-.++-|+.+..+++. ..++
T Consensus 22 ~~~t~dkl~-ia~~Ld~~Gv~~IE~~--ggatf-----~~----~~----~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~ 85 (448)
T PRK12331 22 RMTTEEMLP-ILEKLDNAGYHSLEMW--GGATF-----DA----CL----RFLNEDPWERLRKIRKAVKKTKLQMLLRGQ 85 (448)
T ss_pred ccCHHHHHH-HHHHHHHcCCCEEEec--CCccc-----hh----hh----ccCCCCHHHHHHHHHHhCCCCEEEEEeccc
Confidence 345455444 4555899999999994 11000 00 00 00011236666666654 2233
Q ss_pred -EEeeCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEE
Q 043823 273 -YIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLL 332 (454)
Q Consensus 273 -~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~vi 332 (454)
.+|.+++..+-+.+.++.+...|. +.+.+-.++-+.. .-...+++++ ++|+.+.
T Consensus 86 N~~G~~~~pddvv~~~v~~A~~~Gv---d~irif~~lnd~~-n~~~~v~~ak--~~G~~v~ 140 (448)
T PRK12331 86 NLLGYRNYADDVVESFVQKSVENGI---DIIRIFDALNDVR-NLETAVKATK--KAGGHAQ 140 (448)
T ss_pred cccccccCchhhHHHHHHHHHHCCC---CEEEEEEecCcHH-HHHHHHHHHH--HcCCeEE
Confidence 257777776666667777766553 3333333322221 1345778888 8886554
No 110
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=23.57 E-value=6.2e+02 Score=23.77 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCEEEC-CCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHh
Q 043823 141 INILDS-SEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRL 219 (454)
Q Consensus 141 in~fDT-A~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rL 219 (454)
.|.++. +..|+.+ +++.+.+|.+.. .+++..+-|+...... ........+.+.+.+-+.++-|
T Consensus 19 F~~VEvn~TFY~~P--------~~~t~~~W~~~~-p~~F~F~vK~~~~iTH-------~~~l~~~~~~~~~~F~~~~~~L 82 (230)
T PF01904_consen 19 FNTVEVNSTFYRIP--------SPETVARWREQT-PEGFRFSVKAPQLITH-------ERRLRDCAEELWRRFLEALEPL 82 (230)
T ss_dssp -SEEEE-HHCCSSS---------HHHHHHHHCTS--TT-EEEEE--CCCCC-------CCHCGSSHHHHHHHHHHHCHHH
T ss_pred CCeEEECcccCCCC--------CHHHHHHHHhhC-CCCeEEEEeccHHhee-------cccccccHHHHHHHHHHHHHHH
Confidence 444443 3468643 788999998865 5789999998643210 0111124566756666699999
Q ss_pred CCCcccEEEEeCCc
Q 043823 220 NTDYIDLLQIHWPD 233 (454)
Q Consensus 220 g~d~iDl~~lH~pd 233 (454)
| +++..+++.-|-
T Consensus 83 ~-~klg~iL~Q~Pp 95 (230)
T PF01904_consen 83 G-EKLGPILFQFPP 95 (230)
T ss_dssp H-T-EEEEEEE--T
T ss_pred h-hcceEEEEEcCC
Confidence 9 999999999885
No 111
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=23.53 E-value=6.1e+02 Score=23.67 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=21.1
Q ss_pred EEEEeccccccccccchhhhHhhhcccCCCeeEEecc
Q 043823 299 IVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYS 335 (454)
Q Consensus 299 ~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~s 335 (454)
+..+...|+.++ ..+++.|+ ++|+.+.+|.
T Consensus 183 ~~~~~~~~~~~~-----~~~v~~~~--~~Gl~v~vwT 212 (237)
T cd08583 183 IKAVTISKNYVN-----DKLIEKLN--KAGIYVYVYT 212 (237)
T ss_pred CcEEEechhhcC-----HHHHHHHH--HCCCEEEEEe
Confidence 344555555433 47889999 8999999984
No 112
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=23.48 E-value=7.9e+02 Score=24.94 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCC
Q 043823 124 NTEKESHEILSYAFENGINILDSSE 148 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~ 148 (454)
.+.++..++++..-+.||..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4678888999999999999999753
No 113
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=23.22 E-value=5.7e+02 Score=24.74 Aligned_cols=112 Identities=15% Similarity=0.254 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHH--cCcc-cEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELID--EGKV-RYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~--~G~I-r~iGvSn 278 (454)
.++.+.+++-++..++. | +|-+++-.-..+. .....+|-.+.++..++ .|++ -..|++.
T Consensus 18 ~id~~~~~~~i~~l~~~-G---v~gl~~~GstGE~--------------~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 79 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEA-G---VDGLVVLGSTGEF--------------YSLTDEERKELLEIVVEAAAGRVPVIAGVGA 79 (289)
T ss_dssp SB-HHHHHHHHHHHHHT-T---SSEEEESSTTTTG--------------GGS-HHHHHHHHHHHHHHHTTSSEEEEEEES
T ss_pred CcCHHHHHHHHHHHHHc-C---CCEEEECCCCccc--------------ccCCHHHHHHHHHHHHHHccCceEEEecCcc
Confidence 34667777776666643 3 6666765433111 12344554444444444 3454 7789999
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcc--cCCCeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHP--KNCNIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~--~~~gi~via~s 335 (454)
.+..+..++.+.++..|...+.+..-.|... .+++++++++. ..-++.++.|.
T Consensus 80 ~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~----s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 80 NSTEEAIELARHAQDAGADAVLVIPPYYFKP----SQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEEESTSSSC----CHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred hhHHHHHHHHHHHhhcCceEEEEeccccccc----hhhHHHHHHHHHHhhcCCCEEEEE
Confidence 9998888888999888764444333333322 23445554431 15667787775
No 114
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=22.64 E-value=4.1e+02 Score=27.84 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred cCceeeccccC--------CCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEE
Q 043823 110 ISEITLGTMTF--------GEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIA 181 (454)
Q Consensus 110 Vs~lglGt~~~--------g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~ 181 (454)
|.+|.+|.-++ |...+.+++.+.++.+.+.|+-.+-.-=.||
T Consensus 174 vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~G------------------------------ 223 (449)
T PRK09058 174 ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFG------------------------------ 223 (449)
T ss_pred CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEee------------------------------
Q ss_pred eeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEe-----------------CC-chhhhcccccc
Q 043823 182 TKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIH-----------------WP-DRYVALFGEYM 243 (454)
Q Consensus 182 TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH-----------------~p-d~~~~~~~~~~ 243 (454)
.+.. +.+.+++.++..++ |+.++|++|.+. .| +
T Consensus 224 ---lPgq---------------T~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~---------- 274 (449)
T PRK09058 224 ---LPGQ---------------TPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPAT---------- 274 (449)
T ss_pred ---CCCC---------------CHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCC----------
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCC
Q 043823 244 YDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNE 279 (454)
Q Consensus 244 ~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~ 279 (454)
.+...+-...+.+.|.+.|. +++++|||
T Consensus 275 -------~~~~~~my~~~~~~L~~~Gy-~~yeis~f 302 (449)
T PRK09058 275 -------PAERADMYAYGVEFLAKAGW-RQLSNSHW 302 (449)
T ss_pred -------HHHHHHHHHHHHHHHHHCCC-eEEeeeee
No 115
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=21.85 E-value=4.2e+02 Score=25.00 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCCchHHHHHHHhhcCCCCcEEEEeeccCCCCCcccccccccccCC
Q 043823 124 NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRV 203 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G~sE~~lG~aL~~~~R~~v~I~TK~~~~~~~~~~~~~~~~~~~~ 203 (454)
.++++..++.+.+.+.|..|+=|+..|+. .|.+-+.+....+.. ..+ +.-|..+--.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~------~gat~~~v~~m~~~~-~~~--~~IKasGGIr-------------- 189 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFST------GGATVEDVKLMRETV-GPR--VGVKASGGIR-------------- 189 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCC------CCCCHHHHHHHHHHh-CCC--ceEEeeCCcC--------------
Confidence 36788899999999999999999999852 456666665554432 222 2233322111
Q ss_pred CHHHHHHHHHHHHHHhCCC
Q 043823 204 DAANIKESVEKSLKRLNTD 222 (454)
Q Consensus 204 s~~~i~~~le~SL~rLg~d 222 (454)
+.++..+-++.--.|+|+.
T Consensus 190 t~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 190 TLEDALAMIEAGATRLGTS 208 (221)
T ss_pred CHHHHHHHHHcCcceEccC
Confidence 5677777777777777764
No 116
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=21.84 E-value=7.5e+02 Score=24.07 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHc--Cc-ccEEeeCC
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDE--GK-VRYIGVSN 278 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~--G~-Ir~iGvSn 278 (454)
.++.+.+++-++..++ .-+|-+++-.-.. +. ...+.+|-.+.++..++. |+ --..|++.
T Consensus 17 ~iD~~~l~~l~~~l~~----~Gv~gi~v~GstG------E~--------~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~ 78 (289)
T cd00951 17 SFDEDAYRAHVEWLLS----YGAAALFAAGGTG------EF--------FSLTPDEYAQVVRAAVEETAGRVPVLAGAGY 78 (289)
T ss_pred CcCHHHHHHHHHHHHH----cCCCEEEECcCCc------Cc--------ccCCHHHHHHHHHHHHHHhCCCCCEEEecCC
Confidence 4577888888777665 3456555554321 11 234555655555555553 43 34567775
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeccc-cccccccchhhhHh----hhcccCCCeeEEecc
Q 043823 279 ETSYGVMEFVHAAEVEGLPKIVSIQNSY-SLLVRCRFEVDLVE----VCHPKNCNIGLLAYS 335 (454)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~vQ~~y-nll~~~~~~~~ll~----~c~~~~~gi~via~s 335 (454)
+..+..++.+.+...|...+ .+..+| ... .++++++ .|. ..++.++.|.
T Consensus 79 -~t~~~i~~a~~a~~~Gad~v-~~~pP~y~~~----~~~~i~~~f~~v~~--~~~~pi~lYn 132 (289)
T cd00951 79 -GTATAIAYAQAAEKAGADGI-LLLPPYLTEA----PQEGLYAHVEAVCK--STDLGVIVYN 132 (289)
T ss_pred -CHHHHHHHHHHHHHhCCCEE-EECCCCCCCC----CHHHHHHHHHHHHh--cCCCCEEEEe
Confidence 77777788888888876544 344443 222 2344444 445 5679999997
No 117
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.74 E-value=3.5e+02 Score=25.78 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=34.2
Q ss_pred EeeCCCChh--HHHHHHHHHHHcCCCCEEEEeccccc---cccc---cchhhhHhhhcccCCCeeEEecccccC
Q 043823 274 IGVSNETSY--GVMEFVHAAEVEGLPKIVSIQNSYSL---LVRC---RFEVDLVEVCHPKNCNIGLLAYSPLGG 339 (454)
Q Consensus 274 iGvSn~~~~--~l~~~~~~~~~~~~~~~~~vQ~~ynl---l~~~---~~~~~ll~~c~~~~~gi~via~spL~~ 339 (454)
+|+|++... .+.+.++.++..|+. .+++..+. +.+. ....++.+.++ ++||.+.++.|...
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~~---~vEl~~~~~~~~~~~~~~~~~~~l~~~~~--~~gl~v~s~~~~~~ 71 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGYD---GIEIWGGRPHAFAPDLKAGGIKQIKALAQ--TYQMPIIGYTPETN 71 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCCC---EEEEccCCccccccccCchHHHHHHHHHH--HcCCeEEEecCccc
Confidence 566655433 366777777777644 33331110 0110 11245667777 89999988877543
No 118
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=21.67 E-value=9.2e+02 Score=25.04 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=78.7
Q ss_pred ccCceeecccc-CCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCCCCC--chHHHHHHHhhc-----CCCCcEEE
Q 043823 109 VISEITLGTMT-FGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQG--KTDLYIASWLKS-----QPRDKVII 180 (454)
Q Consensus 109 ~Vs~lglGt~~-~g~~~~~~~a~~~l~~Ale~Gin~fDTA~~Yg~~~~~~~~G--~sE~~lG~aL~~-----~~R~~v~I 180 (454)
.|=+++.|==+ ++.-.+..++.+++..|++.| ....|+. ..| .+-+.+.+.+.. ...++|||
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sg-----k~N~Yap-----s~G~~~AR~AVAeYl~~~l~~kl~a~DV~l 131 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSG-----KGNGYAP-----SVGILPARRAVAEYLNRDLPNKLTADDVVL 131 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcC-----CCCCcCC-----ccccHHHHHHHHHHhhcCCCCccCcCceEE
Confidence 34455555322 333235678888999999998 4567762 123 256677777642 34789999
Q ss_pred EeeccCCCCCcccccccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCch--hh-----hcccccccccCCCCCCC
Q 043823 181 ATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDR--YV-----ALFGEYMYDYSKWRPSV 253 (454)
Q Consensus 181 ~TK~~~~~~~~~~~~~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~--~~-----~~~~~~~~~~~~~~~~~ 253 (454)
++-+. ..| +-+-++|.+=|- . +++-+|.. |. ......+|| .-++.
T Consensus 132 tsGC~--------------------qAI-e~~i~~LA~p~a---N-ILlPrPGfp~Y~~~a~~~~lEVR~yd---lLPe~ 183 (447)
T KOG0259|consen 132 TSGCS--------------------QAI-ELAISSLANPGA---N-ILLPRPGFPLYDTRAIYSGLEVRYYD---LLPEK 183 (447)
T ss_pred eccch--------------------HHH-HHHHHHhcCCCC---c-eecCCCCCchHHHhhhhcCceeEeec---ccCcc
Confidence 88752 111 111122222221 1 12222221 00 001111111 00112
Q ss_pred CHHHHHHHHHHHHHcCcccEEee-------CCCChhHHHHHHHHHHHcCCC
Q 043823 254 PIVEQLRAFKELIDEGKVRYIGV-------SNETSYGVMEFVHAAEVEGLP 297 (454)
Q Consensus 254 ~~~e~~~aL~~L~~~G~Ir~iGv-------Sn~~~~~l~~~~~~~~~~~~~ 297 (454)
..+--++.++.|.++.-+--+=+ +-|+.+++.++++.|++.+..
T Consensus 184 ~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~ 234 (447)
T KOG0259|consen 184 DWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIM 234 (447)
T ss_pred cceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCe
Confidence 22233678888899877665544 345677899999999887653
No 119
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.46 E-value=9.9e+02 Score=25.35 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=53.5
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHH----cCcccEEee
Q 043823 201 LRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELID----EGKVRYIGV 276 (454)
Q Consensus 201 ~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~----~G~Ir~iGv 276 (454)
+.++.+.|.+.++. +..+|...+-|.-=..| +..+++.+.+++..+++ .|.++.|+|
T Consensus 113 ~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p------------------~~~~~eyi~e~i~~I~~~~~~~g~i~~v~i 173 (469)
T PRK09613 113 KKLTQEEIREEVKA-LEDMGHKRLALVAGEDP------------------PNCDIEYILESIKTIYSTKHGNGEIRRVNV 173 (469)
T ss_pred eECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC------------------CCCCHHHHHHHHHHHHHhccccCcceeeEE
Confidence 45789999999975 57788777655421222 22456777777777775 477887777
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEecccc
Q 043823 277 SNETSYGVMEFVHAAEVEGLPKIVSIQNSYS 307 (454)
Q Consensus 277 Sn~~~~~l~~~~~~~~~~~~~~~~~vQ~~yn 307 (454)
+-... .. +-.+..+..|.....+.|--||
T Consensus 174 nig~l-t~-eey~~LkeaGv~~~~l~qETY~ 202 (469)
T PRK09613 174 NIAPT-TV-ENYKKLKEAGIGTYQLFQETYH 202 (469)
T ss_pred EeecC-CH-HHHHHHHHcCCCEEEeccccCC
Confidence 53321 11 2234455566666777776654
No 120
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=21.27 E-value=1e+02 Score=26.54 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.0
Q ss_pred hhhhHhhhcccCCCeeEEeccccc
Q 043823 315 EVDLVEVCHPKNCNIGLLAYSPLG 338 (454)
Q Consensus 315 ~~~ll~~c~~~~~gi~via~spL~ 338 (454)
-.++++.|+ +.||.|++|-.+.
T Consensus 46 lge~v~a~h--~~Girv~ay~~~~ 67 (132)
T PF14871_consen 46 LGEQVEACH--ERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHH--HCCCEEEEEEeee
Confidence 467888999 8999999987665
No 121
>PLN02444 HMP-P synthase
Probab=21.26 E-value=7.7e+02 Score=26.83 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=58.9
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCC
Q 043823 201 LRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNET 280 (454)
Q Consensus 201 ~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~ 280 (454)
.+++.+.+...|++..+ +-+|.+-||.-- ..+.++.++ + |..||-+-+
T Consensus 295 ~~lt~d~~~d~ieeQae----qGVDfmTIH~Gv------------------------~~~~v~~~~--~--R~tgIVSRG 342 (642)
T PLN02444 295 ENLTWEVFRETLIEQAE----QGVDYFTIHAGV------------------------LLRYIPLTA--K--RMTGIVSRG 342 (642)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEChhh------------------------HHHHHHHHh--C--cccCceeCC
Confidence 35677778777777765 578888899732 244444454 3 667765555
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEecccccCCcCCCccCCCC
Q 043823 281 SYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYLDIN 350 (454)
Q Consensus 281 ~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~spL~~G~Ltg~~~~~~ 350 (454)
..-+ ...+..++ .-|++.. .-+++++.|+ +++|.+ .|+.|+--|...+.+
T Consensus 343 GSi~---a~Wml~~~---------kENPlYe--~FD~ileI~k--~YDVtl----SLGDGLRPG~iaDA~ 392 (642)
T PLN02444 343 GSIH---AKWCLAYH---------KENFAYE--HWDDILDICN--QYDIAL----SIGDGLRPGSIYDAN 392 (642)
T ss_pred cHHH---HHHHHHcC---------CcCchHH--HHHHHHHHHH--HhCeee----eccCCcCCCccccCC
Confidence 4322 23333222 2233433 2357999999 999977 567777666554443
No 122
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.06 E-value=5.4e+02 Score=24.84 Aligned_cols=119 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred ccccccCCCHHHHHHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEe
Q 043823 196 DNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIG 275 (454)
Q Consensus 196 ~~~~~~~~s~~~i~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iG 275 (454)
.+.....++.+...+-++. |.++|+|+|++-+..... ....-.......+.++.+.++.+ +..+..+
T Consensus 10 ~q~~~~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~ 76 (266)
T cd07944 10 GYVNNWDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPE-----------KEFKGKSAFCDDEFLRRLLGDSK-GNTKIAV 76 (266)
T ss_pred ccccCccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCc-----------cccCCCccCCCHHHHHHHHhhhc-cCCEEEE
Q ss_pred eCCCChhHHHHHHHHHHHcCCCCEEEEeccccccccccchhhhHhhhcccCCCeeEEec
Q 043823 276 VSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAY 334 (454)
Q Consensus 276 vSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~~~~~~~ll~~c~~~~~gi~via~ 334 (454)
++......+..+..+... .++.+.+.+..-+- ..-.+.+++++ ++|+.|...
T Consensus 77 ~~~~~~~~~~~l~~a~~~----gv~~iri~~~~~~~-~~~~~~i~~ak--~~G~~v~~~ 128 (266)
T cd07944 77 MVDYGNDDIDLLEPASGS----VVDMIRVAFHKHEF-DEALPLIKAIK--EKGYEVFFN 128 (266)
T ss_pred EECCCCCCHHHHHHHhcC----CcCEEEEecccccH-HHHHHHHHHHH--HCCCeEEEE
No 123
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=20.60 E-value=6.2e+02 Score=22.64 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCcccEEeeCCCChhHHHHHHHHHHHcCCCCEEEEecccccccc--ccchhhhHhhhcccCCCeeE
Q 043823 254 PIVEQLRAFKELIDEGKVRYIGVSNETSYGVMEFVHAAEVEGLPKIVSIQNSYSLLVR--CRFEVDLVEVCHPKNCNIGL 331 (454)
Q Consensus 254 ~~~e~~~aL~~L~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~~ynll~~--~~~~~~ll~~c~~~~~gi~v 331 (454)
..+++++...+=-++.-|++|=|.+.+.+....+++.... .-++++|--++..-.. ...+.++-+..+ ++|..|
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg--~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~--erGa~v 86 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG--DLKVVVVTHHAGFEEKGTQEMDEEVRKELK--ERGAKV 86 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc--CceEEEEEeecccccCCceecCHHHHHHHH--HcCcee
Confidence 3467777777777788899999877766655556665532 1234444433332222 122456777777 888888
Q ss_pred EecccccCC
Q 043823 332 LAYSPLGGG 340 (454)
Q Consensus 332 ia~spL~~G 340 (454)
+.-|=.-+|
T Consensus 87 ~~~sHalSg 95 (186)
T COG1751 87 LTQSHALSG 95 (186)
T ss_pred eeehhhhhc
Confidence 775544333
No 124
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.57 E-value=6.2e+02 Score=25.96 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=66.2
Q ss_pred EEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHH-cCc---ccEEeeCCC--ChhHHHHHHHHHHHcCCCCE
Q 043823 226 LLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELID-EGK---VRYIGVSNE--TSYGVMEFVHAAEVEGLPKI 299 (454)
Q Consensus 226 l~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~-~G~---Ir~iGvSn~--~~~~l~~~~~~~~~~~~~~~ 299 (454)
.+-||.++..... .. .-.....+++++++++.+..+ .|+ |.|+=+.++ +.+++.++.+.++......+
T Consensus 241 avSLha~d~e~R~--~l----~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~ 314 (373)
T PRK14459 241 AVSLHAPDDELRD--EL----VPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWV 314 (373)
T ss_pred EEEeCCCCHHHHH--Hh----cCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCe
Confidence 4678998853210 00 000123568999999888874 465 666666644 45556667777664322246
Q ss_pred EEEeccccccccccc----h---hhhHhhhcccCCCeeEEecccccCC
Q 043823 300 VSIQNSYSLLVRCRF----E---VDLVEVCHPKNCNIGLLAYSPLGGG 340 (454)
Q Consensus 300 ~~vQ~~ynll~~~~~----~---~~ll~~c~~~~~gi~via~spL~~G 340 (454)
.++-++||.+....+ . ..+.+..+ ++||.+......+.-
T Consensus 315 ~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~--~~gi~~tiR~~~G~d 360 (373)
T PRK14459 315 HVNLIPLNPTPGSKWTASPPEVEREFVRRLR--AAGVPCTVRDTRGQE 360 (373)
T ss_pred EEEEEccCCCCCCCCcCCCHHHHHHHHHHHH--HCCCeEEeeCCCCcC
Confidence 778889998643211 1 34666677 899999888776653
No 125
>PRK12928 lipoyl synthase; Provisional
Probab=20.56 E-value=5.3e+02 Score=25.36 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHcC---cccE---EeeCCCChhHHHHHHHHHHHcCCCCEEEEec-cccc-------ccccc---c
Q 043823 252 SVPIVEQLRAFKELIDEG---KVRY---IGVSNETSYGVMEFVHAAEVEGLPKIVSIQN-SYSL-------LVRCR---F 314 (454)
Q Consensus 252 ~~~~~e~~~aL~~L~~~G---~Ir~---iGvSn~~~~~l~~~~~~~~~~~~~~~~~vQ~-~ynl-------l~~~~---~ 314 (454)
....++.++.++.+++.| .++. +|+ +=+.+++.+.++.++..+. +.+.+ +|.. +.+.. .
T Consensus 184 ~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~---d~v~i~~Yl~p~~~~~~v~~~~~~~~ 259 (290)
T PRK12928 184 GADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGC---DRLTIGQYLRPSLAHLPVQRYWTPEE 259 (290)
T ss_pred CCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCC---CEEEEEcCCCCCccCCceeeccCHHH
Confidence 356788999999999988 3443 466 5566677777777777654 33332 3432 11111 1
Q ss_pred hhhhHhhhcccCCCeeEEecccccC
Q 043823 315 EVDLVEVCHPKNCNIGLLAYSPLGG 339 (454)
Q Consensus 315 ~~~ll~~c~~~~~gi~via~spL~~ 339 (454)
-+.+-.++. +.|...++.+||-.
T Consensus 260 f~~~~~~~~--~~g~~~~~~~p~~r 282 (290)
T PRK12928 260 FEALGQIAR--ELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHHHH--HcCCceeEecCccc
Confidence 134556677 78888888888764
No 126
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=20.56 E-value=1e+03 Score=25.28 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCC
Q 043823 124 NTEKESHEILSYAFENGINILDSSE 148 (454)
Q Consensus 124 ~~~~~a~~~l~~Ale~Gin~fDTA~ 148 (454)
.+.++-.++.+...+.|+.+|+...
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4567888888988899999999753
No 127
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.30 E-value=4.2e+02 Score=25.42 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEe
Q 043823 202 RVDAANIKESVEKSLKRLNTDYIDLLQIH 230 (454)
Q Consensus 202 ~~s~~~i~~~le~SL~rLg~d~iDl~~lH 230 (454)
.++.+.. ..+-+.|.++|+++|++-+..
T Consensus 18 ~~~~~~k-~~i~~~L~~~Gv~~iEvg~~~ 45 (263)
T cd07943 18 QFTLEQV-RAIARALDAAGVPLIEVGHGD 45 (263)
T ss_pred ecCHHHH-HHHHHHHHHcCCCEEEeecCC
Confidence 3455544 455556999999999998764
No 128
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=20.22 E-value=4.7e+02 Score=26.54 Aligned_cols=103 Identities=10% Similarity=0.133 Sum_probs=60.3
Q ss_pred EEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHH-cCc---ccEEeeCCCC--hhHHHHHHHHHHHcCCCCEE
Q 043823 227 LQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELID-EGK---VRYIGVSNET--SYGVMEFVHAAEVEGLPKIV 300 (454)
Q Consensus 227 ~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~-~G~---Ir~iGvSn~~--~~~l~~~~~~~~~~~~~~~~ 300 (454)
+-||.++.... ... ..+....+++++++++.++.+ .|+ |+++=+.+++ .+++.++.+.++.. ++.
T Consensus 219 iSL~a~~~e~r--~~l----~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l---~~~ 289 (355)
T TIGR00048 219 ISLHAPNDELR--SSL----MPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGT---KCK 289 (355)
T ss_pred EEeCCCCHHHH--HHh----cCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcC---CCc
Confidence 66999874321 000 001123468899999987655 443 5555555555 36777777776543 255
Q ss_pred EEeccccccccccc----h---hhhHhhhcccCCCeeEEecccccCC
Q 043823 301 SIQNSYSLLVRCRF----E---VDLVEVCHPKNCNIGLLAYSPLGGG 340 (454)
Q Consensus 301 ~vQ~~ynll~~~~~----~---~~ll~~c~~~~~gi~via~spL~~G 340 (454)
++-++||....... . ..+.++.+ ++|+.+......|.-
T Consensus 290 VnLIPynp~~~~~~~~ps~e~i~~f~~~L~--~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 290 VNLIPWNPFPEADYERPSNEQIDRFAKTLM--SYGFTVTIRKSRGDD 334 (355)
T ss_pred eEEEecccCCCCCCCCCCHHHHHHHHHHHH--HCCCeEEEeCCCCcc
Confidence 66678887542111 1 23445566 789999888776653
No 129
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.16 E-value=2.7e+02 Score=26.79 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCcccEEEEeCCchhhhcccccccccCCCCCCCCHHHHHHHHHHHHHcCcccEEeeCCCC----hhHH
Q 043823 209 KESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYMYDYSKWRPSVPIVEQLRAFKELIDEGKVRYIGVSNET----SYGV 284 (454)
Q Consensus 209 ~~~le~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~L~~~G~Ir~iGvSn~~----~~~l 284 (454)
...+++-|+-.| +|||++-+-|-.... .+.+-+-+.++-+++-|.--|.|=.-+. ...+
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l----------------~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~ 86 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSAL----------------YPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKF 86 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGG----------------STCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeee----------------cCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChH
Confidence 566778888888 899999999865321 2222333444444445665555521110 2346
Q ss_pred HHHHHHHHHcCCCCEEEEecccccccccc-chhhhHhhhcccCCCeeEEe
Q 043823 285 MEFVHAAEVEGLPKIVSIQNSYSLLVRCR-FEVDLVEVCHPKNCNIGLLA 333 (454)
Q Consensus 285 ~~~~~~~~~~~~~~~~~vQ~~ynll~~~~-~~~~ll~~c~~~~~gi~via 333 (454)
.+.++.|+..| |+++.+.=..++-.. ....++..++ ++|..|+.
T Consensus 87 ~~yl~~~k~lG---f~~IEiSdGti~l~~~~r~~~I~~~~--~~Gf~v~~ 131 (244)
T PF02679_consen 87 DEYLEECKELG---FDAIEISDGTIDLPEEERLRLIRKAK--EEGFKVLS 131 (244)
T ss_dssp HHHHHHHHHCT----SEEEE--SSS---HHHHHHHHHHHC--CTTSEEEE
T ss_pred HHHHHHHHHcC---CCEEEecCCceeCCHHHHHHHHHHHH--HCCCEEee
Confidence 77888888876 455554333232211 1246777788 88877665
Done!