BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043825
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 161 MYKLLRALDLGYLVLNQYLS----EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLN 216
++ L LD YL NQ S + L+ L+ L+LN L+S+P+ F+ L+NL TL+
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 217 MPFSDIDHIA-DEFWKMNKL 235
+ + + + F ++ KL
Sbjct: 162 LSTNQLQSVPHGAFDRLGKL 181
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 161 MYKLLRALDLGYLVLNQYLS----EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLN 216
++ L LD YL NQ S + L+ L+ L+LN L+S+P+ F+ L+NL TL+
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 217 MPFSDIDHIA-DEFWKMNKL 235
+ + + + F ++ KL
Sbjct: 162 LSTNQLQSVPHGAFDRLGKL 181
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 165 LRALDLGYLVLNQYLSE--IENLSLLRYLKLNIPSLKSLPS 203
LR LDLG L +Y+SE E L LRYL L + +LK +P+
Sbjct: 133 LRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 165 LRALDLGYLVLNQYLSE--IENLSLLRYLKLNIPSLKSLPS 203
LR LDLG L +Y+SE E L LRYL L + +LK +P+
Sbjct: 133 LRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 165 LRALDLGYLVLNQYLSE--IENLSLLRYLKLNIPSLKSLPS 203
LR LDLG L Y+SE E LS LRYL L + +L+ +P+
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 186 SLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL 235
S +R+L L+ + SL S F L +L LN+ ++ I+ IADE F+ ++ L
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316
>pdb|3LO0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Ehrlichia Chaffeensis
Length = 193
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 133 YYPHLHSLLYFTSESDHLDPIDWQKICEM----YKLLRALDLGYLVLNQYLSEIENLSLL 188
YYP + + T D DP+D ++RA +G LV++ E + +
Sbjct: 72 YYPCNYGFIPHTCAGDG-DPVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAV 130
Query: 189 RYLKL-----NIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWK 231
K+ NI P SF N +S+ +T + ++ E WK
Sbjct: 131 PTHKVDQYYNNIKDYSDFPVSFLNSISHFFTFYKKLEEDKFVSVEGWK 178
>pdb|2CB4|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|E Chain E, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|F Chain F, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|G Chain G, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|H Chain H, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|I Chain I, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|J Chain J, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|K Chain K, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|L Chain L, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|M Chain M, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
pdb|2CB4|N Chain N, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E197q
Length = 291
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 174 VLNQYLSEIENLSLLRYLKLNIPSL 198
V NQ LS +E+ LL YL+ N PS+
Sbjct: 98 VTNQNLSPVEDTHLLNYLRTNSPSI 122
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 129 YLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188
YLDD P +S LY D LD +D+ + + ++ + V N ++ +++ + +
Sbjct: 88 YLDDNDPRTNSFLYLIGILDQLDNVDYI----LMENVKGFE-NSTVRNLFIDKLKECNFI 142
Query: 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNM--PFSDIDHI 225
L PS +P+S Y N+ PF D I
Sbjct: 143 YQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEI 181
>pdb|2CB6|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|E Chain E, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|F Chain F, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|G Chain G, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|H Chain H, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|I Chain I, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|J Chain J, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|K Chain K, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|L Chain L, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|M Chain M, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|N Chain N, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|O Chain O, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
pdb|2CB6|P Chain P, Crystal Structure Of The Catalytic Domain Of The
Mosquitocidal Toxin From Bacillus Sphaericus, Mutant
E195q
Length = 291
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 174 VLNQYLSEIENLSLLRYLKLNIPSL 198
V NQ LS +E+ LL YL+ N PS+
Sbjct: 98 VTNQNLSPVEDTHLLNYLRTNSPSI 122
>pdb|2VSA|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|B Chain B, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
Length = 841
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 174 VLNQYLSEIENLSLLRYLKLNIPSL 198
V NQ LS +E+ LL YL+ N PS+
Sbjct: 86 VTNQNLSPVEDTHLLNYLRTNSPSI 110
>pdb|3SZP|A Chain A, Full-Length Structure Of The Vibrio Cholerae Virulence
Activator, Aphb, A Member Of The Lttr Protein Family
pdb|3SZP|B Chain B, Full-Length Structure Of The Vibrio Cholerae Virulence
Activator, Aphb, A Member Of The Lttr Protein Family
Length = 291
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 134 YPHLHSLLYFTSESDHLDPIDWQKI 158
YP +H L ++++D LDP +W I
Sbjct: 117 YPDIHIELMMSNQADDLDPTEWDVI 141
>pdb|3T1B|B Chain B, Crystal Structure Of The Full-Length Aphb N100e Variant
pdb|3T1B|C Chain C, Crystal Structure Of The Full-Length Aphb N100e Variant
pdb|3T1B|A Chain A, Crystal Structure Of The Full-Length Aphb N100e Variant
pdb|3T1B|D Chain D, Crystal Structure Of The Full-Length Aphb N100e Variant
Length = 291
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 134 YPHLHSLLYFTSESDHLDPIDWQKI 158
YP +H L ++++D LDP +W I
Sbjct: 117 YPDIHIELMMSNQADDLDPTEWDVI 141
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 183 ENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL 235
+ L+ L YL L L+SLP F+ L+NL L++ ++ + + + F K+ +L
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 165 LRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDH 224
+R L LG L+ +S ++ L+ L YL L L+SLP+ F+ L+NL L + + +
Sbjct: 65 VRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 225 IADEFW 230
+ D +
Sbjct: 124 LPDGVF 129
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 111 SRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTS 145
S +V + C+ Q DF + DY L +LLY S
Sbjct: 808 SGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKS 842
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 111 SRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTS 145
S +V + C+ Q DF + DY L +LLY S
Sbjct: 808 SGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKS 842
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,268,448
Number of Sequences: 62578
Number of extensions: 291842
Number of successful extensions: 605
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 36
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)