Query 043825
Match_columns 235
No_of_seqs 298 out of 2848
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-38 4.4E-43 296.5 10.5 220 4-235 399-644 (889)
2 PLN03210 Resistant to P. syrin 99.7 4.5E-17 9.7E-22 159.1 11.0 203 4-234 424-682 (1153)
3 KOG0617 Ras suppressor protein 99.1 1.9E-12 4.2E-17 98.4 -3.2 77 156-233 95-173 (264)
4 KOG0617 Ras suppressor protein 99.0 1.8E-11 3.9E-16 93.1 -2.9 118 111-235 31-152 (264)
5 PLN00113 leucine-rich repeat r 99.0 1.6E-09 3.6E-14 104.9 8.4 116 113-233 118-236 (968)
6 PLN00113 leucine-rich repeat r 98.9 2.3E-09 5E-14 103.9 8.2 118 112-234 139-261 (968)
7 KOG0444 Cytoskeletal regulator 98.9 2.2E-10 4.8E-15 102.3 -0.9 117 113-233 55-173 (1255)
8 KOG0444 Cytoskeletal regulator 98.8 6.8E-10 1.5E-14 99.3 -0.9 80 154-234 213-292 (1255)
9 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.3E-13 65.5 3.5 59 163-222 1-61 (61)
10 PLN03150 hypothetical protein; 98.7 3.6E-08 7.8E-13 91.2 7.3 90 137-231 420-512 (623)
11 KOG0472 Leucine-rich repeat pr 98.7 8.1E-10 1.7E-14 94.0 -4.0 92 134-232 205-297 (565)
12 PF14580 LRR_9: Leucine-rich r 98.6 2.8E-08 6.1E-13 77.1 4.2 107 111-226 17-129 (175)
13 KOG0472 Leucine-rich repeat pr 98.6 1E-08 2.2E-13 87.5 0.8 115 115-235 390-530 (565)
14 PF12799 LRR_4: Leucine Rich r 98.5 1.2E-07 2.6E-12 56.3 3.4 39 187-226 2-40 (44)
15 PLN03150 hypothetical protein; 98.5 3.9E-07 8.4E-12 84.4 7.9 107 115-226 420-532 (623)
16 PLN03210 Resistant to P. syrin 98.5 3.8E-07 8.2E-12 90.0 8.1 109 112-228 588-700 (1153)
17 PF14580 LRR_9: Leucine-rich r 98.5 1.6E-07 3.4E-12 72.9 4.1 85 134-225 18-103 (175)
18 PF12799 LRR_4: Leucine Rich r 98.4 3.2E-07 7E-12 54.5 3.8 41 163-203 1-41 (44)
19 KOG4658 Apoptotic ATPase [Sign 98.4 6.2E-07 1.3E-11 85.6 6.0 95 134-235 522-620 (889)
20 KOG1259 Nischarin, modulator o 98.3 7.1E-08 1.5E-12 79.7 -0.5 93 134-234 306-400 (490)
21 PF13855 LRR_8: Leucine rich r 98.3 4.4E-07 9.5E-12 57.9 3.3 60 135-198 1-61 (61)
22 KOG0618 Serine/threonine phosp 98.2 1.6E-07 3.4E-12 87.4 -0.6 104 115-224 361-466 (1081)
23 PRK15370 E3 ubiquitin-protein 98.2 2.1E-06 4.6E-11 80.7 6.8 102 112-227 198-300 (754)
24 KOG0618 Serine/threonine phosp 98.2 3.2E-07 6.9E-12 85.4 0.2 91 136-232 46-136 (1081)
25 PRK15370 E3 ubiquitin-protein 98.2 7.2E-06 1.6E-10 77.2 9.1 103 114-230 179-282 (754)
26 KOG0532 Leucine-rich repeat (L 98.2 3.4E-07 7.3E-12 81.3 -0.6 73 156-230 182-254 (722)
27 PRK15387 E3 ubiquitin-protein 98.2 4.5E-06 9.7E-11 78.5 6.8 61 165-229 284-361 (788)
28 KOG4194 Membrane glycoprotein 98.1 1.4E-06 3E-11 77.9 3.2 111 111-225 123-236 (873)
29 KOG0532 Leucine-rich repeat (L 98.0 3.5E-07 7.5E-12 81.3 -2.9 93 134-233 97-189 (722)
30 cd00116 LRR_RI Leucine-rich re 98.0 8.9E-06 1.9E-10 68.7 5.3 110 113-223 108-234 (319)
31 PRK15387 E3 ubiquitin-protein 98.0 7.9E-06 1.7E-10 76.9 5.0 63 163-229 402-465 (788)
32 KOG4194 Membrane glycoprotein 97.9 1.2E-05 2.7E-10 72.0 5.3 97 134-235 124-223 (873)
33 COG4886 Leucine-rich repeat (L 97.9 5.7E-06 1.2E-10 72.4 2.5 88 135-228 116-204 (394)
34 COG4886 Leucine-rich repeat (L 97.9 7.8E-06 1.7E-10 71.5 3.3 115 113-234 116-233 (394)
35 KOG1259 Nischarin, modulator o 97.9 2.6E-06 5.6E-11 70.6 0.2 108 111-227 305-416 (490)
36 KOG4579 Leucine-rich repeat (L 97.9 2.3E-06 5E-11 63.2 -0.6 90 134-228 52-141 (177)
37 KOG4579 Leucine-rich repeat (L 97.8 4.3E-06 9.3E-11 61.8 0.5 89 112-206 52-143 (177)
38 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4.2E-10 73.7 2.4 104 112-220 121-230 (699)
39 cd00116 LRR_RI Leucine-rich re 97.7 8.4E-05 1.8E-09 62.7 5.8 111 112-223 80-206 (319)
40 KOG4237 Extracellular matrix p 97.6 1.6E-05 3.5E-10 68.1 -0.1 89 134-226 66-156 (498)
41 KOG4237 Extracellular matrix p 97.3 9.6E-05 2.1E-09 63.5 1.5 71 155-225 266-337 (498)
42 PRK15386 type III secretion pr 97.2 0.00081 1.8E-08 58.9 6.4 94 113-221 52-167 (426)
43 KOG3207 Beta-tubulin folding c 97.2 0.00013 2.7E-09 63.4 1.1 110 112-226 196-317 (505)
44 KOG3665 ZYG-1-like serine/thre 97.0 0.00056 1.2E-08 64.1 3.5 87 134-224 121-209 (699)
45 PF00560 LRR_1: Leucine Rich R 97.0 0.00025 5.5E-09 35.3 0.7 20 212-231 2-21 (22)
46 PRK15386 type III secretion pr 96.9 0.0011 2.4E-08 58.1 4.4 82 134-232 51-137 (426)
47 KOG0531 Protein phosphatase 1, 96.9 0.00034 7.4E-09 61.8 1.3 81 134-222 117-198 (414)
48 KOG1909 Ran GTPase-activating 96.9 0.0019 4.1E-08 54.7 5.4 112 111-222 155-282 (382)
49 KOG1859 Leucine-rich repeat pr 96.8 0.00018 3.8E-09 66.3 -1.1 81 134-222 186-266 (1096)
50 KOG0531 Protein phosphatase 1, 96.8 0.00056 1.2E-08 60.5 1.6 86 134-227 94-179 (414)
51 PF00560 LRR_1: Leucine Rich R 96.7 0.00039 8.6E-09 34.6 0.2 19 188-206 2-20 (22)
52 KOG1859 Leucine-rich repeat pr 96.6 0.00025 5.5E-09 65.3 -2.2 77 155-234 179-255 (1096)
53 KOG3207 Beta-tubulin folding c 96.6 0.00068 1.5E-08 59.0 0.5 88 134-225 196-286 (505)
54 KOG1644 U2-associated snRNP A' 96.2 0.0075 1.6E-07 47.6 4.2 82 134-220 63-150 (233)
55 KOG1909 Ran GTPase-activating 96.2 0.0061 1.3E-07 51.7 3.9 89 134-223 156-254 (382)
56 PF13504 LRR_7: Leucine rich r 96.0 0.0036 7.9E-08 29.0 1.2 16 211-226 2-17 (17)
57 KOG2982 Uncharacterized conser 96.0 0.003 6.5E-08 52.7 1.3 86 134-222 70-158 (418)
58 KOG1644 U2-associated snRNP A' 96.0 0.0085 1.9E-07 47.3 3.7 82 136-224 43-127 (233)
59 PF13504 LRR_7: Leucine rich r 95.7 0.0069 1.5E-07 28.0 1.3 16 187-202 2-17 (17)
60 KOG2123 Uncharacterized conser 95.6 0.0018 3.9E-08 53.5 -1.3 79 134-220 18-98 (388)
61 KOG2982 Uncharacterized conser 94.9 0.015 3.3E-07 48.6 2.0 63 154-220 62-131 (418)
62 smart00369 LRR_TYP Leucine-ric 94.9 0.024 5.2E-07 29.1 2.0 21 209-229 1-21 (26)
63 smart00370 LRR Leucine-rich re 94.9 0.024 5.2E-07 29.1 2.0 21 209-229 1-21 (26)
64 smart00369 LRR_TYP Leucine-ric 94.8 0.028 6.2E-07 28.8 2.2 22 185-206 1-22 (26)
65 smart00370 LRR Leucine-rich re 94.8 0.028 6.2E-07 28.8 2.2 22 185-206 1-22 (26)
66 KOG2739 Leucine-rich acidic nu 94.6 0.021 4.7E-07 46.6 2.1 91 134-226 64-159 (260)
67 KOG2739 Leucine-rich acidic nu 94.2 0.023 4.9E-07 46.4 1.5 66 157-224 59-130 (260)
68 KOG0473 Leucine-rich repeat pr 94.1 0.0021 4.5E-08 51.9 -4.7 81 134-220 41-121 (326)
69 KOG0473 Leucine-rich repeat pr 93.9 0.0015 3.3E-08 52.6 -5.8 59 134-197 64-122 (326)
70 KOG2120 SCF ubiquitin ligase, 91.3 0.046 9.9E-07 45.9 -0.7 105 113-220 210-348 (419)
71 smart00364 LRR_BAC Leucine-ric 87.2 0.39 8.4E-06 24.8 1.2 17 187-203 3-19 (26)
72 KOG2120 SCF ubiquitin ligase, 85.4 0.12 2.6E-06 43.5 -1.9 84 134-221 184-271 (419)
73 smart00365 LRR_SD22 Leucine-ri 82.9 1.1 2.3E-05 23.1 1.7 17 209-225 1-17 (26)
74 KOG2123 Uncharacterized conser 78.6 0.34 7.4E-06 40.5 -1.6 64 160-226 16-79 (388)
75 PF13516 LRR_6: Leucine Rich r 78.1 1.1 2.4E-05 22.2 0.7 14 210-223 2-15 (24)
76 PF13306 LRR_5: Leucine rich r 77.5 3.8 8.3E-05 29.2 3.9 85 134-227 34-119 (129)
77 PF13306 LRR_5: Leucine rich r 72.2 9.1 0.0002 27.2 4.7 36 158-195 76-112 (129)
78 KOG1947 Leucine rich repeat pr 67.0 5.5 0.00012 35.2 3.1 86 134-220 213-305 (482)
79 KOG3864 Uncharacterized conser 65.7 1.1 2.5E-05 35.5 -1.3 32 163-194 151-184 (221)
80 COG5238 RNA1 Ran GTPase-activa 64.2 5.2 0.00011 33.6 2.1 65 111-175 118-197 (388)
81 smart00368 LRR_RI Leucine rich 64.1 6 0.00013 20.5 1.7 13 187-199 3-15 (28)
82 COG5238 RNA1 Ran GTPase-activa 60.1 16 0.00035 30.8 4.3 90 134-223 91-198 (388)
83 smart00367 LRR_CC Leucine-rich 59.6 7 0.00015 19.7 1.4 14 210-223 2-16 (26)
84 KOG4341 F-box protein containi 59.2 1.8 4E-05 38.1 -1.4 37 136-174 139-175 (483)
85 PF14162 YozD: YozD-like prote 57.9 13 0.00027 22.5 2.4 22 48-69 9-30 (57)
86 KOG3864 Uncharacterized conser 52.9 6.2 0.00013 31.5 0.7 62 157-219 119-185 (221)
87 KOG1947 Leucine rich repeat pr 36.5 23 0.00051 31.2 1.9 81 134-217 242-328 (482)
88 KOG4308 LRR-containing protein 36.1 3 6.6E-05 37.7 -3.8 87 134-221 203-301 (478)
89 COG3432 Predicted transcriptio 30.4 87 0.0019 21.7 3.5 48 40-90 27-82 (95)
90 PF13463 HTH_27: Winged helix 28.3 1.5E+02 0.0032 18.2 4.9 30 53-82 35-64 (68)
91 PF00610 DEP: Domain found in 26.6 1.7E+02 0.0038 18.4 4.4 41 30-72 18-60 (74)
92 KOG3763 mRNA export factor TAP 24.4 57 0.0012 30.1 2.2 63 134-199 217-283 (585)
93 COG1606 ATP-utilizing enzymes 24.3 41 0.00088 27.8 1.2 35 6-44 162-199 (269)
94 cd04761 HTH_MerR-SF Helix-Turn 23.3 74 0.0016 18.1 2.0 13 34-46 15-27 (49)
95 cd04443 DEP_GPR155 DEP (Dishev 22.5 2.5E+02 0.0054 18.8 5.0 40 30-71 31-70 (83)
96 PF08471 Ribonuc_red_2_N: Clas 21.9 1.2E+02 0.0026 20.9 2.9 30 33-62 57-88 (93)
97 KOG3763 mRNA export factor TAP 21.6 55 0.0012 30.2 1.6 62 160-222 215-282 (585)
98 PHA02126 hypothetical protein 21.6 36 0.00077 24.5 0.3 10 7-16 45-54 (153)
99 KOG4341 F-box protein containi 20.7 65 0.0014 28.8 1.8 60 160-220 369-436 (483)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-38 Score=296.47 Aligned_cols=220 Identities=26% Similarity=0.379 Sum_probs=185.2
Q ss_pred CeeeeeccCCCCc-------cCcCCCCCCCCCCcChHHHHHHHHhcCCCC----C-ChHHHHHHHHHHHHhCCceeeeee
Q 043825 4 PETSTSQWNIPTR-------DEYQPEEYTNQRQISTRQLYQLWIAEGFIP----D-NSEATAEKYLEQLINRGFVEVKKR 71 (235)
Q Consensus 4 p~l~lSY~~Lp~~-------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~----g-~~e~~~~~~~~~Li~r~ll~~~~~ 71 (235)
|.|++||++||.+ ||+|||||+ |++++||.+||||||+. + +++++|++|+++|+++||++..+.
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~----I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYE----IKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccc----cchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 8899999999976 999999999 99999999999999997 3 899999999999999999998775
Q ss_pred CCCCceeeEEeChhHHHHHHHhhc-----ccceecC-C--CC-CCCCCCCCCeEEEEEEcCCCCccccccc-CCCcceEE
Q 043825 72 RAGGTIKTCSIRSRCWPSLLVVAL-----NAEFVFS-P--TL-APKGESRKNVKRFCALEQQSDFAYLDDY-YPHLHSLL 141 (235)
Q Consensus 72 ~~~g~~~~~~mhdlv~dla~~~~~-----~e~~~~~-~--~~-~~~~~~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~ 141 (235)
. ++..+|+|||+|||+|.++|+ +++++.. + .. ......+..+||+++..+.... ..... +++++||.
T Consensus 475 ~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~-~~~~~~~~~L~tLl 551 (889)
T KOG4658|consen 475 E--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH-IAGSSENPKLRTLL 551 (889)
T ss_pred c--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh-ccCCCCCCccceEE
Confidence 4 677889999999999999999 6665552 1 11 1123466789999999988763 33344 88999999
Q ss_pred EecCCC--CCCCCcchhHHhhccCccCeEEEeCCc-ccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCc
Q 043825 142 YFTSES--DHLDPIDWQKICEMYKLLRALDLGYLV-LNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMP 218 (235)
Q Consensus 142 ~~~~~~--~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~ 218 (235)
+.++.. .. ....+|..++.||||||++|. +.++|++|+.|.|||||+++++.++.||.+++ +|+.|++|++.
T Consensus 552 l~~n~~~l~~----is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~-~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 552 LQRNSDWLLE----ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG-NLKKLIYLNLE 626 (889)
T ss_pred Eeecchhhhh----cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH-HHHhhheeccc
Confidence 998863 22 345679999999999999876 78999999999999999999999999999999 99999999999
Q ss_pred CC-CCccccHhhcccCCC
Q 043825 219 FS-DIDHIADEFWKMNKL 235 (235)
Q Consensus 219 ~~-~l~~lP~~i~~L~~L 235 (235)
.+ .+..+|..+..|++|
T Consensus 627 ~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSL 644 (889)
T ss_pred cccccccccchhhhcccc
Confidence 98 566666555546554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=4.5e-17 Score=159.05 Aligned_cols=203 Identities=14% Similarity=0.121 Sum_probs=117.5
Q ss_pred CeeeeeccCCCCc--------cCcCCCCCCCCCCcChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeeCCCC
Q 043825 4 PETSTSQWNIPTR--------DEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGG 75 (235)
Q Consensus 4 p~l~lSY~~Lp~~--------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~~~g 75 (235)
+.|++||++|+.+ ||+|+.++. + +.|..|+|.+... ++.-++.|+++||++...
T Consensus 424 ~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~----~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~----- 485 (1153)
T PLN03210 424 KTLRVSYDGLNNKKDKAIFRHIACLFNGEK----V---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE----- 485 (1153)
T ss_pred HHHHHhhhccCccchhhhhheehhhcCCCC----H---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-----
Confidence 5799999999753 899998877 4 3477888887663 222388999999998743
Q ss_pred ceeeEEeChhHHHHHHHhhcccc-------eecC-CCC---CCCCCCCCCeEEEEEEcCCCCcccc--ccc--CCC----
Q 043825 76 TIKTCSIRSRCWPSLLVVALNAE-------FVFS-PTL---APKGESRKNVKRFCALEQQSDFAYL--DDY--YPH---- 136 (235)
Q Consensus 76 ~~~~~~mhdlv~dla~~~~~~e~-------~~~~-~~~---~~~~~~~~~~r~lsl~~~~~~~~~~--~~~--~~~---- 136 (235)
..++|||++|++|+.+++++. +..+ .+. .........++.+++.......... ..+ +++
T Consensus 486 --~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L 563 (1153)
T PLN03210 486 --DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563 (1153)
T ss_pred --CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence 248999999999999987653 1111 000 0000122445555554332221000 001 333
Q ss_pred ---------------------------cceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825 137 ---------------------------LHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189 (235)
Q Consensus 137 ---------------------------LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr 189 (235)
||.|.+.++... .+|..| .+.+|+.|++.++.++.+|..+..+.+|+
T Consensus 564 ~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-----~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk 637 (1153)
T PLN03210 564 KFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-----CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLR 637 (1153)
T ss_pred EEecccccccccceeecCcchhhcCcccEEEEecCCCCC-----CCCCcC-CccCCcEEECcCccccccccccccCCCCC
Confidence 444444333322 122222 34566666666666666666666666666
Q ss_pred EEecccCC-CcccchHHHhcCccccEEeCcCC-CCccccHhhcccCC
Q 043825 190 YLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFS-DIDHIADEFWKMNK 234 (235)
Q Consensus 190 ~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~ 234 (235)
+|+|+++. +..+|. ++ .+++|++|++++| .+.++|.++++|++
T Consensus 638 ~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 638 NIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred EEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCC
Confidence 66666553 555553 55 5666666666665 55566665555544
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.13 E-value=1.9e-12 Score=98.40 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=39.0
Q ss_pred hHHhhccCccCeEEEeCCccc--ccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccC
Q 043825 156 QKICEMYKLLRALDLGYLVLN--QYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMN 233 (235)
Q Consensus 156 ~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~ 233 (235)
|.-|+.++.|.+|||++|.+. .+|..+..+..||-|.|+.|.++-+|..++ +|++||.|.++.|.+-++|.+++.|+
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg-~lt~lqil~lrdndll~lpkeig~lt 173 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG-KLTNLQILSLRDNDLLSLPKEIGDLT 173 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh-hhcceeEEeeccCchhhCcHHHHHHH
Confidence 344444555555555554443 344444444444444444555555555555 55555555555555555555555444
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.00 E-value=1.8e-11 Score=93.15 Aligned_cols=118 Identities=21% Similarity=0.314 Sum_probs=98.7
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
....+.|+.+..+.... .++.+ +.+|.+|.++++... .+|..++.++.||.|+++-|.+..+|..+|.++-|
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 44567788887777653 33444 889999999888886 57788899999999999999888899999999999
Q ss_pred cEEecccCCCc--ccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 189 RYLKLNIPSLK--SLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 189 r~L~l~~~~l~--~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
..|+|..|++. .+|..+. .+..|+.|.++.|.++-+|.++++|++|
T Consensus 105 evldltynnl~e~~lpgnff-~m~tlralyl~dndfe~lp~dvg~lt~l 152 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFEILPPDVGKLTNL 152 (264)
T ss_pred hhhhccccccccccCCcchh-HHHHHHHHHhcCCCcccCChhhhhhcce
Confidence 99999988765 8898888 8888999999999999999999999875
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.96 E-value=1.6e-09 Score=104.88 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEE
Q 043825 113 KNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYL 191 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L 191 (235)
.++|+|.+..+......+...+++|++|.+.++.... ..+..+.++++|++|++++|.+. .+|..++++.+|++|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 4455555544433211111114445555554444322 23344455555555555555443 444444455555555
Q ss_pred ecccCCCc-ccchHHHhcCccccEEeCcCCCCc-cccHhhcccC
Q 043825 192 KLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDID-HIADEFWKMN 233 (235)
Q Consensus 192 ~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~ 233 (235)
++++|.+. .+|..++ ++++|++|++++|.+. .+|..+++++
T Consensus 194 ~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 194 TLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred eccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCC
Confidence 55444432 3444444 4444444444444222 3444444333
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.93 E-value=2.3e-09 Score=103.87 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=68.0
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L 188 (235)
...+++|.+..+......+..+ +++|+.|.+.++.... ..|..+.++++|++|++++|.+. .+|..++++.+|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc----cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 4456666666665543233333 6677777776665432 34455666666666666666654 456666666666
Q ss_pred cEEecccCCCc-ccchHHHhcCccccEEeCcCCCCc-cccHhhcccCC
Q 043825 189 RYLKLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDID-HIADEFWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~ 234 (235)
++|++++|.+. .+|..++ ++++|++|++++|.+. .+|..++++++
T Consensus 215 ~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred cEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCC
Confidence 66666666544 5566666 6666666666666332 45555555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.88 E-value=2.2e-10 Score=102.32 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=65.7
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY 190 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~ 190 (235)
.++.||++..+.... ..+.+ +++||++.+..+..... .+|..+..+.-|.+||||.|++...|..+..-+++-.
T Consensus 55 qkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccC---CCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 345566655554432 22333 66677776666555432 3455555666666666666666666666555555555
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccC
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMN 233 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~ 233 (235)
|+|++|+|..+|.+++.+|.-|-.|||++|.+..+|+.+.+|.
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 6666655655655554455555555555555555555555443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.79 E-value=6.8e-10 Score=99.30 Aligned_cols=80 Identities=24% Similarity=0.178 Sum_probs=45.9
Q ss_pred chhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccC
Q 043825 154 DWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMN 233 (235)
Q Consensus 154 ~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~ 233 (235)
.+|..+..+.+|+.+|+|.|.+..+|+.+.++.+||.|+|++|.|++|...++ .-.+|++|+++.|.+..+|..+++|+
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~-~W~~lEtLNlSrNQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG-EWENLETLNLSRNQLTVLPDAVCKLT 291 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHH-HHhhhhhhccccchhccchHHHhhhH
Confidence 34555566666666666666666666666666666666666655555555555 44555555555555555555555544
Q ss_pred C
Q 043825 234 K 234 (235)
Q Consensus 234 ~ 234 (235)
+
T Consensus 292 k 292 (1255)
T KOG0444|consen 292 K 292 (1255)
T ss_pred H
Confidence 3
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=1.1e-08 Score=65.48 Aligned_cols=59 Identities=29% Similarity=0.340 Sum_probs=50.1
Q ss_pred CccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHH-HhcCccccEEeCcCCCC
Q 043825 163 KLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDI 222 (235)
Q Consensus 163 ~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l 222 (235)
++|++|++++|.++.+|. .+..+.+|++|++++|.+..+|+.. . .+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~-~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFS-NLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTT-TSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHc-CCCCCCEEeCcCCcC
Confidence 468899999999998874 6788999999999999999888754 5 899999999998854
No 10
>PLN03150 hypothetical protein; Provisional
Probab=98.70 E-value=3.6e-08 Score=91.17 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=74.8
Q ss_pred cceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEEecccCCCc-ccchHHHhcCccccE
Q 043825 137 LHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYLKLNIPSLK-SLPSSFFNYLSNLYT 214 (235)
Q Consensus 137 LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L~l~~~~l~-~lP~~i~~~L~~L~~ 214 (235)
++.|.+.++.... .++..+.++++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..++ +|++|++
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRI 494 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCE
Confidence 5566666655543 56778899999999999999987 78989999999999999999876 7899999 9999999
Q ss_pred EeCcCCCC-ccccHhhcc
Q 043825 215 LNMPFSDI-DHIADEFWK 231 (235)
Q Consensus 215 L~l~~~~l-~~lP~~i~~ 231 (235)
|+|++|.+ ..+|..++.
T Consensus 495 L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EECcCCcccccCChHHhh
Confidence 99999955 488887765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.67 E-value=8.1e-10 Score=94.04 Aligned_cols=92 Identities=21% Similarity=0.205 Sum_probs=74.6
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcC-CcccCcEEecccCCCcccchHHHhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIE-NLSLLRYLKLNIPSLKSLPSSFFNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~-~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L 212 (235)
+.+|.-|.+..+... .+| .|..+..|..|+++.|+++.+|...+ .|.+|..|+++.|++++.|.+++ .|++|
T Consensus 205 l~~L~~LyL~~Nki~-----~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c-lLrsL 277 (565)
T KOG0472|consen 205 LESLELLYLRRNKIR-----FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC-LLRSL 277 (565)
T ss_pred hhhhHHHHhhhcccc-----cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH-Hhhhh
Confidence 555555555555553 233 67788888888888888888888776 88999999999999999999999 99999
Q ss_pred cEEeCcCCCCccccHhhccc
Q 043825 213 YTLNMPFSDIDHIADEFWKM 232 (235)
Q Consensus 213 ~~L~l~~~~l~~lP~~i~~L 232 (235)
..||+++|.+..+|.++|+|
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred hhhcccCCccccCCcccccc
Confidence 99999999999999988887
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=2.8e-08 Score=77.07 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=36.7
Q ss_pred CCCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhc-CCcc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEI-ENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~ 186 (235)
.+.+.|.|.+.++.+.. .+.+ +.++++|.+.++..... +.+..++.|+.|++++|.++.+.+.+ ..++
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-T
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccccchHHhCC
Confidence 34456777777776652 2222 56778888877777532 24566788888888888887776554 3577
Q ss_pred cCcEEecccCCCcccc--hHHHhcCccccEEeCcCCCCcccc
Q 043825 187 LLRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
+|+.|.+++|+|..+- ..+. .+++|++|++.+|.+.+-+
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGST
T ss_pred cCCEEECcCCcCCChHHhHHHH-cCCCcceeeccCCcccchh
Confidence 8888888888766443 3455 6778888888887665443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.61 E-value=1e-08 Score=87.47 Aligned_cols=115 Identities=23% Similarity=0.202 Sum_probs=72.7
Q ss_pred eEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEe
Q 043825 115 VKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLK 192 (235)
Q Consensus 115 ~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~ 192 (235)
+..+.+..+.... .+..+ ++.+.|..+..+...+ .++..++.++.|.-|+|++|.+..+|...+.+..||.|+
T Consensus 390 Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is----fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 390 VTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS----FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN 464 (565)
T ss_pred eEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc----cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec
Confidence 5555555555431 22222 4444444443333322 455666777777777777777777777777777777777
Q ss_pred cccCCCcccch-----------------------H-HHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 193 LNIPSLKSLPS-----------------------S-FFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 193 l~~~~l~~lP~-----------------------~-i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
++.|++..+|. + +. ++.+|.+||+..|.+..+|+.+|++++|
T Consensus 465 lS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~-nm~nL~tLDL~nNdlq~IPp~LgnmtnL 530 (565)
T KOG0472|consen 465 LSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLK-NMRNLTTLDLQNNDLQQIPPILGNMTNL 530 (565)
T ss_pred ccccccccchHHHhhHHHHHHHHhccccccccChHHhh-hhhhcceeccCCCchhhCChhhccccce
Confidence 76665554443 3 55 7788888888888888888888888765
No 14
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.51 E-value=1.2e-07 Score=56.34 Aligned_cols=39 Identities=33% Similarity=0.412 Sum_probs=23.7
Q ss_pred cCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcccc
Q 043825 187 LLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
+|++|++++|+++++|+.++ +|++|++|++++|.+.++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~-~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELS-NLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGT-TCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHh-CCCCCCEEEecCCCCCCCc
Confidence 46666666666666666666 6666666666666665554
No 15
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=3.9e-07 Score=84.40 Aligned_cols=107 Identities=21% Similarity=0.170 Sum_probs=86.3
Q ss_pred eEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEE
Q 043825 115 VKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYL 191 (235)
Q Consensus 115 ~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L 191 (235)
+..|.+..+......+..+ +++|+.|.+.++.... .+|..+..++.|+.|+|++|.+. .+|+.++++.+|++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 5556666555543344444 8999999999988764 56788999999999999999988 789999999999999
Q ss_pred ecccCCCc-ccchHHHhc-CccccEEeCcCC-CCcccc
Q 043825 192 KLNIPSLK-SLPSSFFNY-LSNLYTLNMPFS-DIDHIA 226 (235)
Q Consensus 192 ~l~~~~l~-~lP~~i~~~-L~~L~~L~l~~~-~l~~lP 226 (235)
+|++|.+. .+|..++ . +.++..+++.+| .+...|
T Consensus 496 ~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 496 NLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ECcCCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence 99999976 9999998 5 467889999988 454444
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.48 E-value=3.8e-07 Score=90.03 Aligned_cols=109 Identities=21% Similarity=0.172 Sum_probs=60.4
Q ss_pred CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-ccccchhcCCcccCc
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LNQYLSEIENLSLLR 189 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~Lr 189 (235)
+.++|.+.+..+.... .+..+ ..+|+.|.+.++... .++..+..+++|+.|+|+++. +..+|. ++.+++|+
T Consensus 588 p~~Lr~L~~~~~~l~~-lP~~f~~~~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRC-MPSNFRPENLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred CcccEEEEecCCCCCC-CCCcCCccCCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 3456666665544331 22223 566666666655443 233344556666666666554 444443 55566666
Q ss_pred EEecccCC-CcccchHHHhcCccccEEeCcCC-CCccccHh
Q 043825 190 YLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFS-DIDHIADE 228 (235)
Q Consensus 190 ~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~ 228 (235)
+|++++|. +..+|.+++ ++++|+.|++++| .++.+|..
T Consensus 661 ~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred EEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCc
Confidence 66666653 556666666 6666666666665 55566553
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=1.6e-07 Score=72.90 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=31.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhh-ccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICE-MYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L 212 (235)
..++|.|.+.++.... + ..++ .+.+|++|++++|.++.++ .+..+.+|+.|++++|.++++++.+.+.+++|
T Consensus 18 ~~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 5577889999888853 2 2344 5789999999999999875 47889999999999999999987664269999
Q ss_pred cEEeCcCCCCccc
Q 043825 213 YTLNMPFSDIDHI 225 (235)
Q Consensus 213 ~~L~l~~~~l~~l 225 (235)
+.|++++|.+.++
T Consensus 91 ~~L~L~~N~I~~l 103 (175)
T PF14580_consen 91 QELYLSNNKISDL 103 (175)
T ss_dssp -EEE-TTS---SC
T ss_pred CEEECcCCcCCCh
Confidence 9999999977654
No 18
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.42 E-value=3.2e-07 Score=54.49 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=35.6
Q ss_pred CccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccch
Q 043825 163 KLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPS 203 (235)
Q Consensus 163 ~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~ 203 (235)
++|++|++++|.++.+|+.+++|++|++|++++|.++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999999999999999999999999999999988763
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.36 E-value=6.2e-07 Score=85.55 Aligned_cols=95 Identities=26% Similarity=0.301 Sum_probs=76.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc--ccccch-hcCCcccCcEEecccCC-CcccchHHHhcC
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV--LNQYLS-EIENLSLLRYLKLNIPS-LKSLPSSFFNYL 209 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--l~~lp~-~i~~L~~Lr~L~l~~~~-l~~lP~~i~~~L 209 (235)
....|.+.+.++...... .. ...+.|+.|-+.+|. +..++. .+..+++||.|+|++|. +.+||.+|+ +|
T Consensus 522 ~~~~rr~s~~~~~~~~~~-----~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIA-----GS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-EL 594 (889)
T ss_pred hhheeEEEEeccchhhcc-----CC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hh
Confidence 667788887777664321 11 334469999999886 555554 47789999999999885 899999999 99
Q ss_pred ccccEEeCcCCCCccccHhhcccCCC
Q 043825 210 SNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 210 ~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
-+|++|+++++.+..+|.++++|++|
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhh
Confidence 99999999999999999999998865
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=7.1e-08 Score=79.73 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=68.7
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
.+++|.|.++.+.... ...+..+.+|..|||++|.+.++-.+-.+|-+.+.|.|++|.++.+ +.++ +|++|.
T Consensus 306 ~Pkir~L~lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~-KLYSLv 377 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLR-KLYSLV 377 (490)
T ss_pred ccceeEEeccccceee------ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhH-hhhhhe
Confidence 8889999888877742 2347888899999999998877666666666777777777777766 4667 777788
Q ss_pred EEeCcCCCCccccH--hhcccCC
Q 043825 214 TLNMPFSDIDHIAD--EFWKMNK 234 (235)
Q Consensus 214 ~L~l~~~~l~~lP~--~i~~L~~ 234 (235)
.||+++|+++++.. +||+|+.
T Consensus 378 nLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 378 NLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred eccccccchhhHHHhcccccccH
Confidence 88888777766543 5666653
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=4.4e-07 Score=57.89 Aligned_cols=60 Identities=28% Similarity=0.246 Sum_probs=51.0
Q ss_pred CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCC
Q 043825 135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSL 198 (235)
Q Consensus 135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l 198 (235)
++|+.|.+.++.... ..+..|..+++|++|++++|.++.+| ..+..+.+|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE----IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE----ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc----cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578889998887754 34568899999999999999999776 5789999999999999874
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.25 E-value=1.6e-07 Score=87.37 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=80.9
Q ss_pred eEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEe
Q 043825 115 VKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLK 192 (235)
Q Consensus 115 ~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~ 192 (235)
+.-|.+.++......++.+ +++||.|.+..+.... .....+.++..|..|+||||+++.+|..+.++..|++|.
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~----fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS----FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeeccccccc----CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 3444444555444455555 8899999998887765 345678888999999999999999999998888999998
Q ss_pred cccCCCcccchHHHhcCccccEEeCcCCCCcc
Q 043825 193 LNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 193 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~ 224 (235)
..+|.+..+| .+. +++.|+++|++.|.+.+
T Consensus 437 ahsN~l~~fP-e~~-~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 437 AHSNQLLSFP-ELA-QLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hcCCceeech-hhh-hcCcceEEecccchhhh
Confidence 8888888888 777 88888888888886543
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.24 E-value=2.1e-06 Score=80.67 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY 190 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~ 190 (235)
+..++.|.+..+... ..+.. .++|+.|.+.++.... +|..+. ..|+.|++++|.+..+|..+. .+|++
T Consensus 198 p~~L~~L~Ls~N~Lt--sLP~~l~~nL~~L~Ls~N~Lts-----LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 198 PEQITTLILDNNELK--SLPENLQGNIKTLYANSNQLTS-----IPATLP--DTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred ccCCcEEEecCCCCC--cCChhhccCCCEEECCCCcccc-----CChhhh--ccccEEECcCCccCcCChhHh--CCCCE
Confidence 445667777666554 22222 5677777777665542 222222 356667777777666666554 35677
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccccH
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD 227 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 227 (235)
|++++|++..+|..+. .+|++|++++|.+..+|.
T Consensus 267 L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 267 LDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred EECcCCccCccccccC---CCCcEEECCCCccccCcc
Confidence 7777666666666544 266677776666665554
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.20 E-value=3.2e-07 Score=85.41 Aligned_cols=91 Identities=26% Similarity=0.307 Sum_probs=67.1
Q ss_pred CcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEE
Q 043825 136 HLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTL 215 (235)
Q Consensus 136 ~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L 215 (235)
+|++|.+.++... ..|..+..+.+|+.|.++.|.+.++|.+++++.+|+||.|.+|.+..+|.++. .+++|+.|
T Consensus 46 ~L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~-~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS-ELKNLQYL 119 (1081)
T ss_pred eeEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH-hhhccccc
Confidence 3777777776665 34566677777778888877777777777777788888888777777888777 77888888
Q ss_pred eCcCCCCccccHhhccc
Q 043825 216 NMPFSDIDHIADEFWKM 232 (235)
Q Consensus 216 ~l~~~~l~~lP~~i~~L 232 (235)
++++|.+..+|.-|-.+
T Consensus 120 dlS~N~f~~~Pl~i~~l 136 (1081)
T KOG0618|consen 120 DLSFNHFGPIPLVIEVL 136 (1081)
T ss_pred ccchhccCCCchhHHhh
Confidence 88877777777655443
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.19 E-value=7.2e-06 Score=77.17 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=78.3
Q ss_pred CeEEEEEEcCCCCcccccc-cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEe
Q 043825 114 NVKRFCALEQQSDFAYLDD-YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLK 192 (235)
Q Consensus 114 ~~r~lsl~~~~~~~~~~~~-~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~ 192 (235)
+...+.+...... ..+. +.+.++.|.+.++.... ++..+. .+|+.|++++|.++.+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt--sLP~~Ip~~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT--TIPACIPEQITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC--cCCcccccCCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCccccCChhhh--ccccEEE
Confidence 3455666554443 2232 36789999999887764 333332 589999999999999998765 4799999
Q ss_pred cccCCCcccchHHHhcCccccEEeCcCCCCccccHhhc
Q 043825 193 LNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFW 230 (235)
Q Consensus 193 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~ 230 (235)
+++|.+..+|..+. .+|++|++++|.+..+|..+.
T Consensus 248 Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~ 282 (754)
T PRK15370 248 LSINRITELPERLP---SALQSLDLFHNKISCLPENLP 282 (754)
T ss_pred CcCCccCcCChhHh---CCCCEEECcCCccCccccccC
Confidence 99999999999877 489999999999888887654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.15 E-value=3.4e-07 Score=81.35 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=40.5
Q ss_pred hHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhc
Q 043825 156 QKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFW 230 (235)
Q Consensus 156 ~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~ 230 (235)
+.-+..+..||.|.+..|.+..+|+.++.|+ |..||++.|++..||-.+. +|++||+|-|.+|.++.=|..|+
T Consensus 182 psql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr-~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFR-KMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhh-hhhhheeeeeccCCCCCChHHHH
Confidence 3344444555555555555555555555443 5556666666666666666 66666666666665555555443
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.15 E-value=4.5e-06 Score=78.47 Aligned_cols=61 Identities=20% Similarity=0.044 Sum_probs=31.8
Q ss_pred cCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchH---HHhc--------------CccccEEeCcCCCCccccH
Q 043825 165 LRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSS---FFNY--------------LSNLYTLNMPFSDIDHIAD 227 (235)
Q Consensus 165 Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~---i~~~--------------L~~L~~L~l~~~~l~~lP~ 227 (235)
|+.|++++|.++.+|.. +.+|++|++++|.+..+|.. +. . ..+|++|++++|.+..+|.
T Consensus 284 L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~-~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 284 LCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELC-KLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred cCEEECcCCcccccccc---ccccceeECCCCccccCCCCccccc-ccccccCccccccccccccceEecCCCccCCCCC
Confidence 44444555544444432 24566666666655554431 11 1 1357777777777776665
Q ss_pred hh
Q 043825 228 EF 229 (235)
Q Consensus 228 ~i 229 (235)
..
T Consensus 360 lp 361 (788)
T PRK15387 360 LP 361 (788)
T ss_pred CC
Confidence 33
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.15 E-value=1.4e-06 Score=77.88 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=79.2
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 187 (235)
....+.+|.+..+.+.......+ ++.||+|.++.+.... ...+.|..-.+++.|+|++|.++.+ -..+..|..
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~----i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE----IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc----ccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 44557777777776654333333 7778888877776654 2334566667788888888887755 356777888
Q ss_pred CcEEecccCCCcccchHHHhcCccccEEeCcCCCCccc
Q 043825 188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHI 225 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 225 (235)
|..|.|+.|+++.||....++|++|+.|+|..|.++.+
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88888888888889887774699999999888866544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.03 E-value=3.5e-07 Score=81.26 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=49.1
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
+-.|.++.+..+... .++..+.++..|..|||+.|+++.+|..++.|. |+.|-+++|+++.+|+.|+ -+..|.
T Consensus 97 f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig-~~~tl~ 169 (722)
T KOG0532|consen 97 FVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIG-LLPTLA 169 (722)
T ss_pred HHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccc-cchhHH
Confidence 444444544444443 344455555555555555555555555555554 5555555555555555555 555555
Q ss_pred EEeCcCCCCccccHhhcccC
Q 043825 214 TLNMPFSDIDHIADEFWKMN 233 (235)
Q Consensus 214 ~L~l~~~~l~~lP~~i~~L~ 233 (235)
.||.+.|.+..+|+.++.|.
T Consensus 170 ~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 170 HLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred HhhhhhhhhhhchHHhhhHH
Confidence 55555555555555555443
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.00 E-value=8.9e-06 Score=68.71 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=72.9
Q ss_pred CCeEEEEEEcCCCCcccc----ccc--C-CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccch
Q 043825 113 KNVKRFCALEQQSDFAYL----DDY--Y-PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLS 180 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~----~~~--~-~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~ 180 (235)
..++++.+..+....... ... . ++++.|.+.++.........+...+..++.|+.|++++|.+. .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 347777777765541111 111 4 788888888877653111124455677778888888888876 3455
Q ss_pred hcCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCc
Q 043825 181 EIENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 181 ~i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~ 223 (235)
.+..+.+|++|++++|.+. .++..+. .+++|++|++++|.+.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLA-SLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhc-ccCCCCEEecCCCcCc
Confidence 5666678899999888765 3455566 7788999999988665
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.99 E-value=7.9e-06 Score=76.86 Aligned_cols=63 Identities=22% Similarity=0.131 Sum_probs=45.8
Q ss_pred CccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCc-cccHhh
Q 043825 163 KLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID-HIADEF 229 (235)
Q Consensus 163 ~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i 229 (235)
+.|+.|++++|.+..+|... .+|++|++++|.++.+|.+++ ++.+|++|++++|.+. ..|..+
T Consensus 402 s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~-~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHHh-hccCCCeEECCCCCCCchHHHHH
Confidence 45667777777777666532 357778888888888888888 8888888888888554 444444
No 32
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.95 E-value=1.2e-05 Score=71.98 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=77.9
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSS-FFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~ 211 (235)
..++..|.+..+.... .-...++.++.||+|||+.|.++.+|. ++..=.++++|+|++|+|+.+-.. +. .|.+
T Consensus 124 sghl~~L~L~~N~I~s----v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lns 198 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISS----VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNS 198 (873)
T ss_pred ccceeEEeeecccccc----ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc-ccch
Confidence 6678888888877765 345778899999999999999997775 455557899999999999977643 45 8889
Q ss_pred ccEEeCcCCCCccccHhhc-ccCCC
Q 043825 212 LYTLNMPFSDIDHIADEFW-KMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~~i~-~L~~L 235 (235)
|.+|.|+.|.+..+|.-.- +|++|
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred heeeecccCcccccCHHHhhhcchh
Confidence 9999999999999997443 36654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.91 E-value=5.7e-06 Score=72.41 Aligned_cols=88 Identities=28% Similarity=0.343 Sum_probs=45.5
Q ss_pred CCcceEEEecCCCCCCCCcchhHHhhccC-ccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 135 PHLHSLLYFTSESDHLDPIDWQKICEMYK-LLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
+.+..|.+..+... .++.....+. +|+.|++++|.+..+|..++.+++|+.|+++.|.+.++|...+ .+.+|+
T Consensus 116 ~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLN 189 (394)
T ss_pred cceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hhhhhh
Confidence 34444444444443 2233333342 5555555555555555555555555555555555555555554 555555
Q ss_pred EEeCcCCCCccccHh
Q 043825 214 TLNMPFSDIDHIADE 228 (235)
Q Consensus 214 ~L~l~~~~l~~lP~~ 228 (235)
.|++++|.+..+|..
T Consensus 190 ~L~ls~N~i~~l~~~ 204 (394)
T COG4886 190 NLDLSGNKISDLPPE 204 (394)
T ss_pred heeccCCccccCchh
Confidence 555555555555543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.91 E-value=7.8e-06 Score=71.55 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=87.5
Q ss_pred CCeEEEEEEcCCCCccccccc--CC-CcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YP-HLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~-~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr 189 (235)
+.+..+.+..+.... ..+.. .+ +++.|.+.++... .++..+..++.|+.|+++.|.+..+|...+.+..|+
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchh-----hhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 346666666655542 22222 43 8888888888775 344577889999999999999999998888888999
Q ss_pred EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
.|++++|.+..+|..+. .+.+|++|.+++|.+.++|..+.++.+
T Consensus 190 ~L~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~~~~~~~~~~~~ 233 (394)
T COG4886 190 NLDLSGNKISDLPPEIE-LLSALEELDLSNNSIIELLSSLSNLKN 233 (394)
T ss_pred heeccCCccccCchhhh-hhhhhhhhhhcCCcceecchhhhhccc
Confidence 99999999999999887 778899999988866667766666654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.90 E-value=2.6e-06 Score=70.64 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=86.4
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
...++|++-+..+... ...++ +++|.-|.++++... .+...-.++.+++.|.|++|.++.+. .+++|-.|
T Consensus 305 L~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls-----~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSL 376 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLA-----ECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSL 376 (490)
T ss_pred hccceeEEecccccee--eehhhhhcccceEeecccchhH-----hhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhh
Confidence 3466788877777655 33334 888888888887775 34566678899999999999998764 47888899
Q ss_pred cEEecccCCCcccc--hHHHhcCccccEEeCcCCCCccccH
Q 043825 189 RYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIAD 227 (235)
Q Consensus 189 r~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~ 227 (235)
.+|++++|+|..+- .+|| +|++|+++.|.+|.+..+|+
T Consensus 377 vnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 377 VNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeccccccchhhHHHhcccc-cccHHHHHhhcCCCccccch
Confidence 99999999998664 5799 99999999999998877765
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=2.3e-06 Score=63.17 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=76.1
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
...+.+..+.++.... ..+.+-.+++.+..|++++|.+..+|..+..++.||.|+++.|.+...|.-+. .|.+|-
T Consensus 52 ~~el~~i~ls~N~fk~----fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~ 126 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK----FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA-PLIKLD 126 (177)
T ss_pred CceEEEEecccchhhh----CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH-HHHhHH
Confidence 5567777888877764 33455566778999999999999999999999999999999999999999999 899999
Q ss_pred EEeCcCCCCccccHh
Q 043825 214 TLNMPFSDIDHIADE 228 (235)
Q Consensus 214 ~L~l~~~~l~~lP~~ 228 (235)
.|+..+|...++|-.
T Consensus 127 ~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENARAEIDVD 141 (177)
T ss_pred HhcCCCCccccCcHH
Confidence 999999988788754
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=4.3e-06 Score=61.75 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=70.6
Q ss_pred CCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
...+..+++..+.... .++.+ ++-+.+|.+.++... .+|..+..++.||.|++..|.+...|.-|..|.+|
T Consensus 52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-----dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-----DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKL 125 (177)
T ss_pred CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-----hchHHHhhhHHhhhcccccCccccchHHHHHHHhH
Confidence 3456667787776652 22222 667888888887776 56777999999999999999999999999999999
Q ss_pred cEEecccCCCcccchHHH
Q 043825 189 RYLKLNIPSLKSLPSSFF 206 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i~ 206 (235)
-+|+..++.+.++|-.+.
T Consensus 126 ~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 126 DMLDSPENARAEIDVDLF 143 (177)
T ss_pred HHhcCCCCccccCcHHHh
Confidence 999999998888887754
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.9e-05 Score=73.68 Aligned_cols=104 Identities=22% Similarity=0.300 Sum_probs=66.8
Q ss_pred CCCeEEEEEEcCCCCccccc----ccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCccc
Q 043825 112 RKNVKRFCALEQQSDFAYLD----DYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSL 187 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~----~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~ 187 (235)
..++++|.+.+...-...++ .++|.|++|.+.+-..... .+.....++++|+.||+|++.++.+ ..+++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 34566666655332111121 1288888888877555321 3456677888888888888888766 66777777
Q ss_pred CcEEecccCCCcccc--hHHHhcCccccEEeCcCC
Q 043825 188 LRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~ 220 (235)
|+.|.+++-.+..-. ..+. +|++|++||+|..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRD 230 (699)
T ss_pred HHHHhccCCCCCchhhHHHHh-cccCCCeeecccc
Confidence 777777765555322 3556 7777777777765
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.67 E-value=8.4e-05 Score=62.73 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=78.9
Q ss_pred CCCeEEEEEEcCCCCccccccc--CC---CcceEEEecCCCCCCCCcchhHHhhcc-CccCeEEEeCCccc-----ccch
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YP---HLHSLLYFTSESDHLDPIDWQKICEMY-KLLRALDLGYLVLN-----QYLS 180 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~---~LrsL~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~-----~lp~ 180 (235)
...++++.+..+.........+ +. +++.|.+.++.........+...+..+ ++|+.|++++|.++ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 4578888888776642222222 33 499999988776421100233456677 89999999999977 4556
Q ss_pred hcCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCc
Q 043825 181 EIENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 181 ~i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~ 223 (235)
.+..+.+|++|++++|.+. .++..+. .+++|+.|++++|.+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccC
Confidence 6777889999999999876 4555666 7789999999999664
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.56 E-value=1.6e-05 Score=68.10 Aligned_cols=89 Identities=21% Similarity=0.151 Sum_probs=67.4
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEeccc-CCCcccchHHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNI-PSLKSLPSSFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~-~~l~~lP~~i~~~L~~ 211 (235)
.+....+.+..+.... ..+.+|+.+++||.|||+.|.++.+ |+.+..|..|..|-+.+ |+|+.+|.....+|..
T Consensus 66 P~~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred CCcceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 5555666677676654 4577889999999999999998854 88888888887777766 6799999765448888
Q ss_pred ccEEeCcCCCCcccc
Q 043825 212 LYTLNMPFSDIDHIA 226 (235)
Q Consensus 212 L~~L~l~~~~l~~lP 226 (235)
||-|.+..|.+.-++
T Consensus 142 lqrLllNan~i~Cir 156 (498)
T KOG4237|consen 142 LQRLLLNANHINCIR 156 (498)
T ss_pred HHHHhcChhhhcchh
Confidence 888888777655443
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.31 E-value=9.6e-05 Score=63.47 Aligned_cols=71 Identities=25% Similarity=0.217 Sum_probs=59.7
Q ss_pred hhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccc
Q 043825 155 WQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHI 225 (235)
Q Consensus 155 ~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 225 (235)
....|.++++||+|+|++|+++.+ +.++..+.+++.|.|..|++..+...+..+|..|++|+|.+|.|+.+
T Consensus 266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 445789999999999999998855 66788899999999999998888777655889999999999988765
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.00081 Score=58.86 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=54.0
Q ss_pred CCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCC-cccccchhcCCcccCcEE
Q 043825 113 KNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYL-VLNQYLSEIENLSLLRYL 191 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~~lp~~i~~L~~Lr~L 191 (235)
...++|.+..+... .++.+.++|++|.+.++.... .++..+ ...|+.|++++| .+..+|++ |+.|
T Consensus 52 ~~l~~L~Is~c~L~--sLP~LP~sLtsL~Lsnc~nLt----sLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE--SLPVLPNELTEITIENCNNLT----TLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc--ccCCCCCCCcEEEccCCCCcc----cCCchh--hhhhhheEccCcccccccccc------cceE
Confidence 44556666665443 223335567777776644422 233333 246777777777 46666654 4444
Q ss_pred ecccCC---CcccchHHHhcCc------------------cccEEeCcCCC
Q 043825 192 KLNIPS---LKSLPSSFFNYLS------------------NLYTLNMPFSD 221 (235)
Q Consensus 192 ~l~~~~---l~~lP~~i~~~L~------------------~L~~L~l~~~~ 221 (235)
.++++. +..+|+++. .|. +|++|++++|.
T Consensus 118 ~L~~n~~~~L~~LPssLk-~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLT-SLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred EeCCCCCcccccCcchHh-heeccccccccccccccccCCcccEEEecCCC
Confidence 454432 567777766 552 67788888774
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00013 Score=63.40 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=70.8
Q ss_pred CCCeEEEEEEcCCCCcccccc--c-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc--hhcCCcc
Q 043825 112 RKNVKRFCALEQQSDFAYLDD--Y-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL--SEIENLS 186 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~--~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~ 186 (235)
...+.+|.+..+...+..... . ++.+..|.++.+.... .......-++.|+.|||++|.+-..+ ..++.++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCccccccccccccccc
Confidence 345666666666655222211 1 7777777777764321 12233455677888888888866555 4577888
Q ss_pred cCcEEecccCCCccc--chH-----HHhcCccccEEeCcCCCCcccc
Q 043825 187 LLRYLKLNIPSLKSL--PSS-----FFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~l--P~~-----i~~~L~~L~~L~l~~~~l~~lP 226 (235)
.|+-|+++.|++.++ |+. .- .+++|++|++..|.+.+.|
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~-~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTH-TFPKLEYLNISENNIRDWR 317 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhc-ccccceeeecccCcccccc
Confidence 888888888887633 433 23 5788899999888776665
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.00 E-value=0.00056 Score=64.07 Aligned_cols=87 Identities=23% Similarity=0.156 Sum_probs=65.8
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc--ccchhcCCcccCcEEecccCCCcccchHHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN--QYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~ 211 (235)
..+|+.|.+.|..... ...+...-..+|.|+.|.+.+-.+. .+-.-..++++|+.||+|+++++.+ ..|+ +|++
T Consensus 121 r~nL~~LdI~G~~~~s--~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS-~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS--NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS-RLKN 196 (699)
T ss_pred HHhhhhcCccccchhh--ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh-cccc
Confidence 6788899887754432 1133344566899999999998764 4445566888999999999999999 8999 9999
Q ss_pred ccEEeCcCCCCcc
Q 043825 212 LYTLNMPFSDIDH 224 (235)
Q Consensus 212 L~~L~l~~~~l~~ 224 (235)
||+|.+++=.+..
T Consensus 197 Lq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 197 LQVLSMRNLEFES 209 (699)
T ss_pred HHHHhccCCCCCc
Confidence 9999887654443
No 45
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.00 E-value=0.00025 Score=35.31 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=10.3
Q ss_pred ccEEeCcCCCCccccHhhcc
Q 043825 212 LYTLNMPFSDIDHIADEFWK 231 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~~i~~ 231 (235)
|++|++++|.++++|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45555555555555554443
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.93 E-value=0.0011 Score=58.07 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=53.8
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-ccccchhcCCcccCcEEecccC-CCcccchHHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LNQYLSEIENLSLLRYLKLNIP-SLKSLPSSFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~Lr~L~l~~~-~l~~lP~~i~~~L~~ 211 (235)
+.+++.|.+.++.... +| .-..+|+.|.+++|. ++.+|+.+. .+|++|.+++| .+..+|.++.
T Consensus 51 ~~~l~~L~Is~c~L~s-----LP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe----- 115 (426)
T PRK15386 51 ARASGRLYIKDCDIES-----LP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVR----- 115 (426)
T ss_pred hcCCCEEEeCCCCCcc-----cC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccc-----
Confidence 6778888888775542 33 112358888888755 667776553 47888888887 5777776544
Q ss_pred ccEEeCcCC---CCccccHhhccc
Q 043825 212 LYTLNMPFS---DIDHIADEFWKM 232 (235)
Q Consensus 212 L~~L~l~~~---~l~~lP~~i~~L 232 (235)
+|+++++ .+..+|.++..|
T Consensus 116 --~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 116 --SLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred --eEEeCCCCCcccccCcchHhhe
Confidence 4445443 467888877665
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.93 E-value=0.00034 Score=61.83 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchH-HHhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~L 212 (235)
+++|+.|.+..+..... ..+..+..|+.|++++|.+..+.. +..+..|+.+++++|.+..+... .. .+.+|
T Consensus 117 ~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~-~~~~l 188 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDELS-ELISL 188 (414)
T ss_pred hhcchheeccccccccc------cchhhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhhhh-hccch
Confidence 45555555544444321 123334445555555555443322 22244555555555555444432 23 44555
Q ss_pred cEEeCcCCCC
Q 043825 213 YTLNMPFSDI 222 (235)
Q Consensus 213 ~~L~l~~~~l 222 (235)
+.+.+.+|.+
T Consensus 189 ~~l~l~~n~i 198 (414)
T KOG0531|consen 189 EELDLGGNSI 198 (414)
T ss_pred HHHhccCCch
Confidence 5555555433
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.90 E-value=0.0019 Score=54.73 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=74.0
Q ss_pred CCCCeEEEEEEcCCCCccccc----cc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLD----DY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYL 179 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~----~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp 179 (235)
.+..+|.+-+..+........ .+ .+.+..+.+..+.........+...|..+++|++|||..|.++ .+-
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 566788887777765522111 11 5667777776666543221134567888999999999999876 456
Q ss_pred hhcCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCC
Q 043825 180 SEIENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDI 222 (235)
Q Consensus 180 ~~i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l 222 (235)
+.++.+++||.|+++.|.++ .+-..+....++|++|.+.+|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 66778888999998888665 33344432557788888777754
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.85 E-value=0.00018 Score=66.34 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=62.6
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
++.+++|.+..+.... ...+..++.|+.|||+.|.+..+|.--..=.+|..|.+++|-+++| -.|. +|++|+
T Consensus 186 l~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie-~LksL~ 257 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIE-NLKSLY 257 (1096)
T ss_pred HHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHH-hhhhhh
Confidence 7788888888877742 3478888899999999998887776322223488899999888877 4677 899999
Q ss_pred EEeCcCCCC
Q 043825 214 TLNMPFSDI 222 (235)
Q Consensus 214 ~L~l~~~~l 222 (235)
.||+++|-+
T Consensus 258 ~LDlsyNll 266 (1096)
T KOG1859|consen 258 GLDLSYNLL 266 (1096)
T ss_pred ccchhHhhh
Confidence 999998844
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.79 E-value=0.00056 Score=60.47 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=64.3
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
+.++..+.+.++.... +...+..+.+|++|++++|.+..+.. +..+..|+.|.+++|.+..++. +. .+.+|+
T Consensus 94 ~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~-~~-~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISG-LE-SLKSLK 165 (414)
T ss_pred ccceeeeeccccchhh-----cccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccC-Cc-cchhhh
Confidence 6777778887777753 22336788899999999998876543 5667778999999998887753 33 578889
Q ss_pred EEeCcCCCCccccH
Q 043825 214 TLNMPFSDIDHIAD 227 (235)
Q Consensus 214 ~L~l~~~~l~~lP~ 227 (235)
.+++++|.+..++.
T Consensus 166 ~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEN 179 (414)
T ss_pred cccCCcchhhhhhh
Confidence 99999987776654
No 51
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.75 E-value=0.00039 Score=34.59 Aligned_cols=19 Identities=53% Similarity=0.744 Sum_probs=10.0
Q ss_pred CcEEecccCCCcccchHHH
Q 043825 188 LRYLKLNIPSLKSLPSSFF 206 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~~i~ 206 (235)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.57 E-value=0.00025 Score=65.35 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=57.6
Q ss_pred hhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 155 WQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 155 ~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
+..++.-++.|+.|+|+.|++.+.- .+..+.+|+.|||+.|.+..+|.--. .-.+|+.|.+++|.++++- +|.+|++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~-~gc~L~~L~lrnN~l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSM-VGCKLQLLNLRNNALTTLR-GIENLKS 255 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccch-hhhhheeeeecccHHHhhh-hHHhhhh
Confidence 4456677788899999999988654 78888999999999999888874321 2235999999999777763 4555554
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.00068 Score=59.00 Aligned_cols=88 Identities=23% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-ccccchhcCCcccCcEEecccCCCcccc--hHHHhcCc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LNQYLSEIENLSLLRYLKLNIPSLKSLP--SSFFNYLS 210 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~Lr~L~l~~~~l~~lP--~~i~~~L~ 210 (235)
+++++.|.+.+|..... .+......+++|.+|+|++|. +..--.+..-+..|+.|+|++|.+-..+ .-++ .|+
T Consensus 196 l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~-~l~ 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG-TLP 271 (505)
T ss_pred hhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc-ccc
Confidence 45555555555554321 345566677777777777774 2211122233567888999998877777 5567 888
Q ss_pred cccEEeCcCCCCccc
Q 043825 211 NLYTLNMPFSDIDHI 225 (235)
Q Consensus 211 ~L~~L~l~~~~l~~l 225 (235)
.|..|+++.|.+.++
T Consensus 272 ~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASI 286 (505)
T ss_pred chhhhhccccCcchh
Confidence 888898888866543
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.18 E-value=0.0075 Score=47.61 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=61.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc--hhcCCcccCcEEecccCCCcccch----HHHh
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL--SEIENLSLLRYLKLNIPSLKSLPS----SFFN 207 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~Lr~L~l~~~~l~~lP~----~i~~ 207 (235)
+++|.+|.+..+..... -+..-..+++|.+|.|.+|.+..+- .-+..++.|+||.+-+|.++..+. -+.
T Consensus 63 l~rL~tLll~nNrIt~I----~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~- 137 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRI----DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY- 137 (233)
T ss_pred ccccceEEecCCcceee----ccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE-
Confidence 88999999998888753 2334455677999999999987543 345667789999999988775543 256
Q ss_pred cCccccEEeCcCC
Q 043825 208 YLSNLYTLNMPFS 220 (235)
Q Consensus 208 ~L~~L~~L~l~~~ 220 (235)
++++|++||.+.-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 8899999997653
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.15 E-value=0.0061 Score=51.74 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCc-----ccch
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLK-----SLPS 203 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~-----~lP~ 203 (235)
.++||++++..+.....+...+...|...+.|..+.++.|.+. -+-..+..++||+.|+|+.|-++ .+-.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 7789999998887765443356677888999999999999864 34556788999999999999775 4455
Q ss_pred HHHhcCccccEEeCcCCCCc
Q 043825 204 SFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 204 ~i~~~L~~L~~L~l~~~~l~ 223 (235)
.++ .+++|+.|++++|.++
T Consensus 236 aL~-s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 236 ALS-SWPHLRELNLGDCLLE 254 (382)
T ss_pred Hhc-ccchheeecccccccc
Confidence 666 7889999999999653
No 56
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.03 E-value=0.0036 Score=28.98 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=6.0
Q ss_pred cccEEeCcCCCCcccc
Q 043825 211 NLYTLNMPFSDIDHIA 226 (235)
Q Consensus 211 ~L~~L~l~~~~l~~lP 226 (235)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544444
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.003 Score=52.74 Aligned_cols=86 Identities=22% Similarity=0.174 Sum_probs=61.0
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhc-CCcccCcEEecccCCCc--ccchHHHhcCc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEI-ENLSLLRYLKLNIPSLK--SLPSSFFNYLS 210 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~Lr~L~l~~~~l~--~lP~~i~~~L~ 210 (235)
.++++-+.+.++....-+ .+...+.+++.|++|+++.|++....++. -.+++|+.|-|.++.+. ..-..+. .++
T Consensus 70 ~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~-~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD-DLP 146 (418)
T ss_pred hhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh-cch
Confidence 777788877776664211 35566788999999999999877544444 46788999999998754 4445555 777
Q ss_pred cccEEeCcCCCC
Q 043825 211 NLYTLNMPFSDI 222 (235)
Q Consensus 211 ~L~~L~l~~~~l 222 (235)
.++.|.++.|++
T Consensus 147 ~vtelHmS~N~~ 158 (418)
T KOG2982|consen 147 KVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhccchh
Confidence 777777776643
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.97 E-value=0.0085 Score=47.30 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=49.1
Q ss_pred CcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcC-CcccCcEEecccCCCcccc--hHHHhcCccc
Q 043825 136 HLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIE-NLSLLRYLKLNIPSLKSLP--SSFFNYLSNL 212 (235)
Q Consensus 136 ~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~-~L~~Lr~L~l~~~~l~~lP--~~i~~~L~~L 212 (235)
+...+.+.++... ....|..++.|.+|.+.+|.+..+-+.+. .+.+|..|.|.+|++.++- ..+. .++.|
T Consensus 43 ~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKL 115 (233)
T ss_pred ccceecccccchh------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc-cCCcc
Confidence 4445555555542 23456677777777777777776544444 3445777777777665442 1233 56677
Q ss_pred cEEeCcCCCCcc
Q 043825 213 YTLNMPFSDIDH 224 (235)
Q Consensus 213 ~~L~l~~~~l~~ 224 (235)
++|.+-+|.+..
T Consensus 116 ~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 116 EYLTLLGNPVEH 127 (233)
T ss_pred ceeeecCCchhc
Confidence 777776665443
No 59
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.66 E-value=0.0069 Score=28.02 Aligned_cols=16 Identities=50% Similarity=0.567 Sum_probs=6.9
Q ss_pred cCcEEecccCCCcccc
Q 043825 187 LLRYLKLNIPSLKSLP 202 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~lP 202 (235)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666666555554
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.0018 Score=53.54 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=58.1
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccch--HHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPS--SFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~--~i~~~L~~ 211 (235)
+.+++-|.+.++.... .....+|+.|.||.|+-|+++.+- .+..+++|+.|.|+.|.|..+-+ -+. +|++
T Consensus 18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLk-nlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLK-NLPS 89 (388)
T ss_pred HHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHh-cCch
Confidence 3455667777766642 356788999999999999888663 36777888888888888876643 345 7888
Q ss_pred ccEEeCcCC
Q 043825 212 LYTLNMPFS 220 (235)
Q Consensus 212 L~~L~l~~~ 220 (235)
|++|.|..|
T Consensus 90 Lr~LWL~EN 98 (388)
T KOG2123|consen 90 LRTLWLDEN 98 (388)
T ss_pred hhhHhhccC
Confidence 888888766
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.015 Score=48.64 Aligned_cols=63 Identities=29% Similarity=0.264 Sum_probs=48.6
Q ss_pred chhHHhhccCccCeEEEeCCcccc---cchhcCCcccCcEEecccCCCc----ccchHHHhcCccccEEeCcCC
Q 043825 154 DWQKICEMYKLLRALDLGYLVLNQ---YLSEIENLSLLRYLKLNIPSLK----SLPSSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 154 ~~~~~~~~l~~Lr~L~l~~~~l~~---lp~~i~~L~~Lr~L~l~~~~l~----~lP~~i~~~L~~L~~L~l~~~ 220 (235)
....+-...+.++.|||.+|.++. +-.-+.+|++|++|+++.|.+. .+| . .+.+|++|-|.++
T Consensus 62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~-p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---L-PLKNLRVLVLNGT 131 (418)
T ss_pred hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---c-cccceEEEEEcCC
Confidence 444555678889999999999874 3344568999999999998654 555 2 5678999998887
No 62
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.90 E-value=0.024 Score=29.11 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=13.2
Q ss_pred CccccEEeCcCCCCccccHhh
Q 043825 209 LSNLYTLNMPFSDIDHIADEF 229 (235)
Q Consensus 209 L~~L~~L~l~~~~l~~lP~~i 229 (235)
|.+|++|+|++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 345666666666666666554
No 63
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.90 E-value=0.024 Score=29.11 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=13.2
Q ss_pred CccccEEeCcCCCCccccHhh
Q 043825 209 LSNLYTLNMPFSDIDHIADEF 229 (235)
Q Consensus 209 L~~L~~L~l~~~~l~~lP~~i 229 (235)
|.+|++|+|++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 345666666666666666554
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.81 E-value=0.028 Score=28.81 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=17.7
Q ss_pred cccCcEEecccCCCcccchHHH
Q 043825 185 LSLLRYLKLNIPSLKSLPSSFF 206 (235)
Q Consensus 185 L~~Lr~L~l~~~~l~~lP~~i~ 206 (235)
|.+|++|+|++|.++.+|....
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888898888888887764
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.81 E-value=0.028 Score=28.81 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=17.7
Q ss_pred cccCcEEecccCCCcccchHHH
Q 043825 185 LSLLRYLKLNIPSLKSLPSSFF 206 (235)
Q Consensus 185 L~~Lr~L~l~~~~l~~lP~~i~ 206 (235)
|.+|++|+|++|.++.+|....
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888898888888887764
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.64 E-value=0.021 Score=46.58 Aligned_cols=91 Identities=21% Similarity=0.163 Sum_probs=53.7
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc--cchhcCCcccCcEEecccCCCcccc---hHHHhc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ--YLSEIENLSLLRYLKLNIPSLKSLP---SSFFNY 208 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~--lp~~i~~L~~Lr~L~l~~~~l~~lP---~~i~~~ 208 (235)
+++|+.|.++.+...... .+.....++++|++|++++|+++. --..+..+.+|..|++.+|....+- ..++.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 778888888777432211 334445666888888888888763 1222455667778888777644332 233325
Q ss_pred CccccEEeCcCCCCcccc
Q 043825 209 LSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 209 L~~L~~L~l~~~~l~~lP 226 (235)
+++|.+||--...-.+.|
T Consensus 142 l~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 142 LPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred hhhhccccccccCCcccc
Confidence 577777765444333444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.25 E-value=0.023 Score=46.44 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHhhccCccCeEEEeCCc--cc-ccchhcCCcccCcEEecccCCCcc---cchHHHhcCccccEEeCcCCCCcc
Q 043825 157 KICEMYKLLRALDLGYLV--LN-QYLSEIENLSLLRYLKLNIPSLKS---LPSSFFNYLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 157 ~~~~~l~~Lr~L~l~~~~--l~-~lp~~i~~L~~Lr~L~l~~~~l~~---lP~~i~~~L~~L~~L~l~~~~l~~ 224 (235)
..+..++.|+.|.++.|. .. .++-..-.+.+|++|++++|++.. ++ .+. ++.+|..|++..|....
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~-~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLK-ELENLKSLDLFNCSVTN 130 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhh-hhcchhhhhcccCCccc
Confidence 346778899999999994 33 455555556899999999998763 32 234 78889999999885443
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.07 E-value=0.0021 Score=51.86 Aligned_cols=81 Identities=10% Similarity=-0.057 Sum_probs=68.3
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
..+...|.+..+... .+...|+.++.|..||++.+.+..+|+..+.+..++.+++..|..+.+|.+.+ ++++++
T Consensus 41 ~kr~tvld~~s~r~v-----n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~-k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-----NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK-KEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHH-----hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc-ccCCcc
Confidence 666677777666554 34456777888888999999999999999999999999999999999999999 999999
Q ss_pred EEeCcCC
Q 043825 214 TLNMPFS 220 (235)
Q Consensus 214 ~L~l~~~ 220 (235)
++++.+|
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 9999888
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.91 E-value=0.0015 Score=52.64 Aligned_cols=59 Identities=7% Similarity=-0.190 Sum_probs=41.2
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCC
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPS 197 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~ 197 (235)
+.++.-|.+..+... ..|..+.....++.+++..|..+.+|.+.+.+.|++|+++.+|.
T Consensus 64 ~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 444444555544433 45666777777788888888888888888888888888887775
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=0.046 Score=45.91 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhc---
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEI--- 182 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i--- 182 (235)
.++..+|+.+...+......+ .++|+.|.+..+.....- ...-.+.+++.|..|++++|.+. .+-..|
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 345556666655543222223 778888888776653211 45566788888888888887643 011111
Q ss_pred ----------------------CCcccCcEEecccCC-Cc-ccchHHHhcCccccEEeCcCC
Q 043825 183 ----------------------ENLSLLRYLKLNIPS-LK-SLPSSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 183 ----------------------~~L~~Lr~L~l~~~~-l~-~lP~~i~~~L~~L~~L~l~~~ 220 (235)
.+.++|..|+|+.+. ++ ..-..+. +++.||+|.++.|
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRC 348 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhh
Confidence 234455666666653 33 3334455 6777777777776
No 71
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.21 E-value=0.39 Score=24.77 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=10.0
Q ss_pred cCcEEecccCCCcccch
Q 043825 187 LLRYLKLNIPSLKSLPS 203 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~lP~ 203 (235)
+|++|++++|++++||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666666654
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.38 E-value=0.12 Score=43.49 Aligned_cols=84 Identities=23% Similarity=0.131 Sum_probs=56.2
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEEecccCC-Ccccch--HHHhcC
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYLKLNIPS-LKSLPS--SFFNYL 209 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L~l~~~~-l~~lP~--~i~~~L 209 (235)
-++++-|.+........ .+...++.+.+|+-|.+.|+.+. .+-..|.+=.+|+.|+++.++ +++.-. -+. ++
T Consensus 184 rsRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-sc 259 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SC 259 (419)
T ss_pred hhhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hh
Confidence 44566666665544321 35566788888888888888876 455667777788888888874 653322 234 67
Q ss_pred ccccEEeCcCCC
Q 043825 210 SNLYTLNMPFSD 221 (235)
Q Consensus 210 ~~L~~L~l~~~~ 221 (235)
..|+.|+|++|.
T Consensus 260 s~L~~LNlsWc~ 271 (419)
T KOG2120|consen 260 SRLDELNLSWCF 271 (419)
T ss_pred hhHhhcCchHhh
Confidence 788888888883
No 73
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.87 E-value=1.1 Score=23.13 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=10.5
Q ss_pred CccccEEeCcCCCCccc
Q 043825 209 LSNLYTLNMPFSDIDHI 225 (235)
Q Consensus 209 L~~L~~L~l~~~~l~~l 225 (235)
|.+|+.|++++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35667777777765544
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.62 E-value=0.34 Score=40.46 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=49.5
Q ss_pred hccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcccc
Q 043825 160 EMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 160 ~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
+.+.+.+.|+.-||.+..+ .-+.++..|..|.|+-|.|+.| ..+. .+++|+.|.|+.|.|..+.
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~-rCtrLkElYLRkN~I~sld 79 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQ-RCTRLKELYLRKNCIESLD 79 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHH-HHHHHHHHHHHhcccccHH
Confidence 3355677788888888743 2345788899999999999988 4556 7899999999999776664
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.08 E-value=1.1 Score=22.21 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=8.4
Q ss_pred ccccEEeCcCCCCc
Q 043825 210 SNLYTLNMPFSDID 223 (235)
Q Consensus 210 ~~L~~L~l~~~~l~ 223 (235)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 57778888877654
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.47 E-value=3.8 Score=29.16 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=44.6
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L 212 (235)
+++++++.+.+. ... .....|..++.|+.+.+.. .+..++. .+....+|+.+.+..+ +..++.....+. +|
T Consensus 34 ~~~l~~i~~~~~-~~~----i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTS----IGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp -TT-SEEEESST-TSC----E-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred cccccccccccc-ccc----cceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 567888887654 322 3345678887888888865 5544444 4556888888888764 667766554254 88
Q ss_pred cEEeCcCCCCccccH
Q 043825 213 YTLNMPFSDIDHIAD 227 (235)
Q Consensus 213 ~~L~l~~~~l~~lP~ 227 (235)
+.+.+.. .+..++.
T Consensus 106 ~~i~~~~-~~~~i~~ 119 (129)
T PF13306_consen 106 KEINIPS-NITKIEE 119 (129)
T ss_dssp -EEE-TT-B-SS---
T ss_pred eEEEECC-CccEECC
Confidence 8887765 3445543
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=72.16 E-value=9.1 Score=27.15 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=13.2
Q ss_pred HhhccCccCeEEEeCCcccccch-hcCCcccCcEEeccc
Q 043825 158 ICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNI 195 (235)
Q Consensus 158 ~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~ 195 (235)
.|..+..|..+++..+ +..++. .+.+. +|+.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 4444555555555443 333322 23333 455555443
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=67.04 E-value=5.5 Score=35.23 Aligned_cols=86 Identities=23% Similarity=0.147 Sum_probs=48.4
Q ss_pred CCCcceEEEecC-CCCCCCCcchhHHhhccCccCeEEEeCCc-cc-ccchhcC-CcccCcEEecccCC-Cc--ccchHHH
Q 043825 134 YPHLHSLLYFTS-ESDHLDPIDWQKICEMYKLLRALDLGYLV-LN-QYLSEIE-NLSLLRYLKLNIPS-LK--SLPSSFF 206 (235)
Q Consensus 134 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~-~lp~~i~-~L~~Lr~L~l~~~~-l~--~lP~~i~ 206 (235)
.++|+.|.+.++ ................+++|+.|+++++. ++ ..-..+. .+.+|+.|.+.++. ++ .+-.-..
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 777777777652 11110000122345566778888888777 44 2222222 25678888866665 43 2222223
Q ss_pred hcCccccEEeCcCC
Q 043825 207 NYLSNLYTLNMPFS 220 (235)
Q Consensus 207 ~~L~~L~~L~l~~~ 220 (235)
++++|+.|++++|
T Consensus 293 -~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 293 -RCPSLRELDLSGC 305 (482)
T ss_pred -hcCcccEEeeecC
Confidence 6778888888887
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.70 E-value=1.1 Score=35.50 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=13.3
Q ss_pred CccCeEEEeCCc-cc-ccchhcCCcccCcEEecc
Q 043825 163 KLLRALDLGYLV-LN-QYLSEIENLSLLRYLKLN 194 (235)
Q Consensus 163 ~~Lr~L~l~~~~-l~-~lp~~i~~L~~Lr~L~l~ 194 (235)
++|+.|++++|. |+ .=...+..+++||.|.++
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 444555555444 33 112333444444444443
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=64.16 E-value=5.2 Score=33.55 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=31.5
Q ss_pred CCCCeEEEEEEcCCCCcc-------------cccc-c-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcc
Q 043825 111 SRKNVKRFCALEQQSDFA-------------YLDD-Y-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVL 175 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~-------------~~~~-~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l 175 (235)
....+.||-++++..... .-.. . -+.|+++++-.+.....+...+...+..-..|+++.+..|.+
T Consensus 118 ~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 118 SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCc
Confidence 456677887777654310 0011 1 667777777655554332111222233334455555555544
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.08 E-value=6 Score=20.47 Aligned_cols=13 Identities=38% Similarity=0.324 Sum_probs=7.2
Q ss_pred cCcEEecccCCCc
Q 043825 187 LLRYLKLNIPSLK 199 (235)
Q Consensus 187 ~Lr~L~l~~~~l~ 199 (235)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666655543
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=60.14 E-value=16 Score=30.76 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=53.8
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch--------------hcCCcccCcEEecccCCCc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS--------------EIENLSLLRYLKLNIPSLK 199 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~--------------~i~~L~~Lr~L~l~~~~l~ 199 (235)
++++++..++++.........+...+++...|..|.+++|.+-.+.. ...+-+.|+......|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 77888888877766542222445567777778888888877542211 1223345666666677776
Q ss_pred ccchHHHh----cCccccEEeCcCCCCc
Q 043825 200 SLPSSFFN----YLSNLYTLNMPFSDID 223 (235)
Q Consensus 200 ~lP~~i~~----~L~~L~~L~l~~~~l~ 223 (235)
.-|....+ .-.+|+++.+..|.|+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 66655421 1136777777776554
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.64 E-value=7 Score=19.67 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=10.1
Q ss_pred ccccEEeCcCC-CCc
Q 043825 210 SNLYTLNMPFS-DID 223 (235)
Q Consensus 210 ~~L~~L~l~~~-~l~ 223 (235)
++|+.|++++| .++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 56788888887 554
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=59.22 E-value=1.8 Score=38.11 Aligned_cols=37 Identities=11% Similarity=-0.071 Sum_probs=15.2
Q ss_pred CcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc
Q 043825 136 HLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV 174 (235)
Q Consensus 136 ~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~ 174 (235)
.+|.|.+.+......+ .+-....+++++..|.+.++.
T Consensus 139 ~lk~LSlrG~r~v~~s--slrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS--SLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred ccccccccccccCCcc--hhhHHhhhCCchhhhhhhcce
Confidence 3444444444333222 233334444444444444443
No 85
>PF14162 YozD: YozD-like protein
Probab=57.89 E-value=13 Score=22.48 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHhCCceeee
Q 043825 48 NSEATAEKYLEQLINRGFVEVK 69 (235)
Q Consensus 48 ~~e~~~~~~~~~Li~r~ll~~~ 69 (235)
+.|++|+-++.+|+.|+++...
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcH
Confidence 5788999999999999998653
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.89 E-value=6.2 Score=31.46 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=40.2
Q ss_pred HHhhccCccCeEEEeCCc-cc-ccchhcC-CcccCcEEecccCC-Ccccc-hHHHhcCccccEEeCcC
Q 043825 157 KICEMYKLLRALDLGYLV-LN-QYLSEIE-NLSLLRYLKLNIPS-LKSLP-SSFFNYLSNLYTLNMPF 219 (235)
Q Consensus 157 ~~~~~l~~Lr~L~l~~~~-l~-~lp~~i~-~L~~Lr~L~l~~~~-l~~lP-~~i~~~L~~L~~L~l~~ 219 (235)
..+.+++.++.|.+.+|. +. .-.+.++ -..+|+.|++++|. |++-- ..+. ++++|+.|.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcC
Confidence 345666677777777776 33 1122233 34689999999885 76332 4566 888888887765
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=36.49 E-value=23 Score=31.22 Aligned_cols=81 Identities=23% Similarity=0.147 Sum_probs=47.8
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-cc--ccchhcCCcccCcEEecccCC-Cc--ccchHHHh
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LN--QYLSEIENLSLLRYLKLNIPS-LK--SLPSSFFN 207 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~--~lp~~i~~L~~Lr~L~l~~~~-l~--~lP~~i~~ 207 (235)
++++++|.+....... +..+......++.|+.|.+.++. ++ .+-.-...+.+|+.|+++++. +. .+.....
T Consensus 242 ~~~L~~l~l~~~~~is--d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~- 318 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVT--DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK- 318 (482)
T ss_pred cCCcCccchhhhhccC--chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH-
Confidence 6777778777665321 11344444458889998877776 44 333444567779999998875 32 2333333
Q ss_pred cCccccEEeC
Q 043825 208 YLSNLYTLNM 217 (235)
Q Consensus 208 ~L~~L~~L~l 217 (235)
+.++|+.|.+
T Consensus 319 ~c~~l~~l~~ 328 (482)
T KOG1947|consen 319 NCPNLRELKL 328 (482)
T ss_pred hCcchhhhhh
Confidence 5555555443
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=36.07 E-value=3 Score=37.73 Aligned_cols=87 Identities=21% Similarity=0.174 Sum_probs=42.6
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCc-cCeEEEeCCccc-----ccchhcCCc-ccCcEEecccCCCc-----cc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKL-LRALDLGYLVLN-----QYLSEIENL-SLLRYLKLNIPSLK-----SL 201 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~-Lr~L~l~~~~l~-----~lp~~i~~L-~~Lr~L~l~~~~l~-----~l 201 (235)
..++++|.+..+.........+...+...+. ++.|++..|.+. .+.+.+..+ .+++.++++.|.+. .+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 3444555544444332111123333444444 555666666543 334444444 45666666666543 44
Q ss_pred chHHHhcCccccEEeCcCCC
Q 043825 202 PSSFFNYLSNLYTLNMPFSD 221 (235)
Q Consensus 202 P~~i~~~L~~L~~L~l~~~~ 221 (235)
...+. ...++++|.++.|.
T Consensus 283 ~~~l~-~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 283 AEVLV-SCRQLEELSLSNNP 301 (478)
T ss_pred HHHHh-hhHHHHHhhcccCc
Confidence 44555 55566666666653
No 89
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=30.43 E-value=87 Score=21.68 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=32.2
Q ss_pred HhcCCCC------C--ChHHHHHHHHHHHHhCCceeeeeeCCCCceeeEEeChhHHHHH
Q 043825 40 IAEGFIP------D--NSEATAEKYLEQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSL 90 (235)
Q Consensus 40 iaeG~i~------g--~~e~~~~~~~~~Li~r~ll~~~~~~~~g~~~~~~mhdlv~dla 90 (235)
+++|=+. + --...|.+|++.|++++++...+. |+-..|.+-+-=.++.
T Consensus 27 ~~~~~~~~Tri~y~aNlny~~~~~yi~~L~~~Gli~~~~~---~~~~~y~lT~KG~~fl 82 (95)
T COG3432 27 ISEGGIGITRIIYGANLNYKRAQKYIEMLVEKGLIIKQDN---GRRKVYELTEKGKRFL 82 (95)
T ss_pred hcCCCCCceeeeeecCcCHHHHHHHHHHHHhCCCEEeccC---CccceEEEChhHHHHH
Confidence 5666655 3 567899999999999997766543 3333466666545443
No 90
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=28.35 E-value=1.5e+02 Score=18.17 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCceeeeeeCCCCceeeEEe
Q 043825 53 AEKYLEQLINRGFVEVKKRRAGGTIKTCSI 82 (235)
Q Consensus 53 ~~~~~~~Li~r~ll~~~~~~~~g~~~~~~m 82 (235)
+.+.+++|+.+++++......+++...++.
T Consensus 35 vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 35 VSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 447799999999998887777777665554
No 91
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=26.61 E-value=1.7e+02 Score=18.44 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=31.1
Q ss_pred cChHHHHHHHHh--cCCCCCChHHHHHHHHHHHHhCCceeeeeeC
Q 043825 30 ISTRQLYQLWIA--EGFIPDNSEATAEKYLEQLINRGFVEVKKRR 72 (235)
Q Consensus 30 i~~~~Li~~Wia--eG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~ 72 (235)
|.-.++|..-+. +|++ ...+.|..+-++|++.++|+.+...
T Consensus 18 F~G~e~v~WL~~~~~~~~--~~r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 18 FTGSEAVDWLMDNFEGFV--RDREEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEHHHHHHHHHHTSCTST--SSHHHHHHHHHHHHHCTSEEESSSS
T ss_pred eEhHHHHHHHHHhccccc--cCHHHHHHHHHHHHHCCCEEECCCC
Confidence 556788875554 6766 4667788888999999999987644
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.45 E-value=57 Score=30.11 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=40.0
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCC--cccccchhcCCc--ccCcEEecccCCCc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYL--VLNQYLSEIENL--SLLRYLKLNIPSLK 199 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~--~l~~lp~~i~~L--~~Lr~L~l~~~~l~ 199 (235)
.+.+.++.+.++.....+ .+...-...+.|..|+|++| .++..+ ++.++ ..|+.|-+.||.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccc
Confidence 667777777777766544 44555677788888888888 333222 22222 23777888888754
No 93
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=24.30 E-value=41 Score=27.83 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=27.1
Q ss_pred eeeeccCCCCc---cCcCCCCCCCCCCcChHHHHHHHHhcCC
Q 043825 6 TSTSQWNIPTR---DEYQPEEYTNQRQISTRQLYQLWIAEGF 44 (235)
Q Consensus 6 l~lSY~~Lp~~---cs~fP~d~~~~~~i~~~~Li~~WiaeG~ 44 (235)
+-+++.+.|+. ++-||.+.+ |+.++|-+.=-||+|
T Consensus 162 lgl~~~~kp~~aCl~sr~p~g~e----i~~e~l~kv~~ae~~ 199 (269)
T COG1606 162 LGLPTWDKPSMACLASRIPYGEE----ITVEDLKKVEEAEEF 199 (269)
T ss_pred cCCCcccCccccccccccCCCcc----ccHHHHHHHHHHHHH
Confidence 56788888888 799999999 999988765444433
No 94
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.30 E-value=74 Score=18.09 Aligned_cols=13 Identities=8% Similarity=0.266 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCCC
Q 043825 34 QLYQLWIAEGFIP 46 (235)
Q Consensus 34 ~Li~~WiaeG~i~ 46 (235)
.-|+.|+.+|++.
T Consensus 15 ~tlr~~~~~g~l~ 27 (49)
T cd04761 15 STLRYYERIGLLS 27 (49)
T ss_pred HHHHHHHHCCCCC
Confidence 3588999999985
No 95
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=22.52 E-value=2.5e+02 Score=18.77 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=30.3
Q ss_pred cChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeee
Q 043825 30 ISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKR 71 (235)
Q Consensus 30 i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~ 71 (235)
|.-.+||...+..|.+. ..+.|-.+-+.|.+.++|+.+..
T Consensus 31 F~GselVdWL~~~~~~~--sR~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 31 FCGCDLVSWLIEVGLAQ--DRGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred ccHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCEEecCC
Confidence 34788999666556663 45668888899999999998764
No 96
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=21.91 E-value=1.2e+02 Score=20.91 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCC--ChHHHHHHHHHHHHh
Q 043825 33 RQLYQLWIAEGFIPD--NSEATAEKYLEQLIN 62 (235)
Q Consensus 33 ~~Li~~WiaeG~i~g--~~e~~~~~~~~~Li~ 62 (235)
++|+..|..=|.=.| +.++.|+.+.+||.-
T Consensus 57 ~Rla~tw~~wG~~~GYF~t~eDA~~FydEl~~ 88 (93)
T PF08471_consen 57 DRLAGTWTYWGWKGGYFATEEDAEAFYDELTY 88 (93)
T ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 456667776554444 678889999999864
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.60 E-value=55 Score=30.18 Aligned_cols=62 Identities=18% Similarity=0.028 Sum_probs=35.0
Q ss_pred hccCccCeEEEeCCccccc---chhcCCcccCcEEecccC--CCcccchHHH-hcCccccEEeCcCCCC
Q 043825 160 EMYKLLRALDLGYLVLNQY---LSEIENLSLLRYLKLNIP--SLKSLPSSFF-NYLSNLYTLNMPFSDI 222 (235)
Q Consensus 160 ~~l~~Lr~L~l~~~~l~~l---p~~i~~L~~Lr~L~l~~~--~l~~lP~~i~-~~L~~L~~L~l~~~~l 222 (235)
.+.+.+..+.|++|.+..+ -.--..-++|..|+|++| .+...+ ++. -+...|+.|-+.||.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcc
Confidence 4566666777888776522 222234457788888887 343332 222 0334567777777744
No 98
>PHA02126 hypothetical protein
Probab=21.57 E-value=36 Score=24.48 Aligned_cols=10 Identities=20% Similarity=0.106 Sum_probs=7.8
Q ss_pred eeeccCCCCc
Q 043825 7 STSQWNIPTR 16 (235)
Q Consensus 7 ~lSY~~Lp~~ 16 (235)
+|||++||--
T Consensus 45 klsydqlpgg 54 (153)
T PHA02126 45 KLSYDQLPGG 54 (153)
T ss_pred hcccccCCCc
Confidence 6899998754
No 99
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.68 E-value=65 Score=28.81 Aligned_cols=60 Identities=20% Similarity=0.111 Sum_probs=28.0
Q ss_pred hccCccCeEEEeCCcc-c-----ccchhcCCcccCcEEecccCC-Cc-ccchHHHhcCccccEEeCcCC
Q 043825 160 EMYKLLRALDLGYLVL-N-----QYLSEIENLSLLRYLKLNIPS-LK-SLPSSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 160 ~~l~~Lr~L~l~~~~l-~-----~lp~~i~~L~~Lr~L~l~~~~-l~-~lP~~i~~~L~~L~~L~l~~~ 220 (235)
.+++.||+|.++.+.. + .+-..-..+.+|..+-|+++. +. ..-+.+. ..++|+.+++-+|
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDC 436 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeech
Confidence 3455556665554431 1 112223345556666666554 21 2222333 4456666665555
Done!