Query 043825
Match_columns 235
No_of_seqs 298 out of 2848
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.5 4.5E-15 1.5E-19 133.8 3.1 85 3-99 364-473 (549)
2 3e6j_A Variable lymphocyte rec 99.4 2.2E-12 7.5E-17 103.4 10.1 120 111-235 38-161 (229)
3 2ell_A Acidic leucine-rich nuc 99.3 4E-12 1.4E-16 96.7 8.3 108 113-227 49-164 (168)
4 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 7.8E-17 96.1 6.0 118 111-235 15-142 (149)
5 4fcg_A Uncharacterized protein 99.3 1.7E-11 5.8E-16 103.4 11.4 117 112-235 182-303 (328)
6 4fcg_A Uncharacterized protein 99.3 8.5E-12 2.9E-16 105.3 9.5 117 113-235 127-255 (328)
7 2v9t_B SLIT homolog 2 protein 99.3 9.1E-12 3.1E-16 99.2 9.2 120 111-235 30-154 (220)
8 1ogq_A PGIP-2, polygalacturona 99.3 1.2E-11 4.2E-16 103.6 10.3 116 113-233 50-173 (313)
9 2v70_A SLIT-2, SLIT homolog 2 99.3 9.9E-12 3.4E-16 99.0 8.9 120 111-235 30-155 (220)
10 2o6s_A Variable lymphocyte rec 99.3 1.8E-11 6.3E-16 96.2 9.9 120 111-235 26-150 (208)
11 1a9n_A U2A', U2A'; complex (nu 99.2 1.1E-11 3.7E-16 95.2 7.2 116 111-235 17-142 (176)
12 4b8c_D Glucose-repressible alc 99.2 6.3E-12 2.2E-16 116.8 6.7 105 113-223 224-329 (727)
13 4ezg_A Putative uncharacterize 99.2 3.5E-11 1.2E-15 94.0 9.8 115 112-235 65-183 (197)
14 3m19_A Variable lymphocyte rec 99.2 2.5E-11 8.5E-16 98.3 9.3 118 112-234 58-180 (251)
15 3m19_A Variable lymphocyte rec 99.2 2.6E-11 8.9E-16 98.2 9.3 118 112-234 34-156 (251)
16 4ezg_A Putative uncharacterize 99.2 1E-10 3.5E-15 91.3 11.6 114 112-235 43-161 (197)
17 2ell_A Acidic leucine-rich nuc 99.2 5.1E-11 1.7E-15 90.5 9.6 118 111-235 22-149 (168)
18 3vq2_A TLR4, TOLL-like recepto 99.2 1.8E-11 6E-16 111.0 8.1 120 111-235 30-155 (606)
19 3e6j_A Variable lymphocyte rec 99.2 6E-11 2E-15 95.0 10.1 97 134-235 39-137 (229)
20 4g8a_A TOLL-like receptor 4; l 99.2 2.9E-11 9.8E-16 109.5 8.4 120 111-235 50-175 (635)
21 2wfh_A SLIT homolog 2 protein 99.2 8.6E-11 2.9E-15 91.7 8.9 104 112-221 30-137 (193)
22 4b8c_D Glucose-repressible alc 99.2 2.2E-11 7.5E-16 113.2 6.4 96 134-235 223-318 (727)
23 1dce_A Protein (RAB geranylger 99.2 5.9E-11 2E-15 107.3 8.7 107 114-229 442-552 (567)
24 1dce_A Protein (RAB geranylger 99.2 5.6E-11 1.9E-15 107.5 8.4 93 135-235 441-535 (567)
25 2r9u_A Variable lymphocyte rec 99.2 9E-11 3.1E-15 90.1 8.3 92 134-230 32-125 (174)
26 2z63_A TOLL-like receptor 4, v 99.2 6.4E-11 2.2E-15 106.3 8.5 118 112-234 27-150 (570)
27 2o6q_A Variable lymphocyte rec 99.2 1.4E-10 4.9E-15 94.8 9.8 118 112-234 84-206 (270)
28 2o6q_A Variable lymphocyte rec 99.2 1.5E-10 5.1E-15 94.7 9.8 117 113-234 61-182 (270)
29 2je0_A Acidic leucine-rich nuc 99.1 4.4E-11 1.5E-15 89.1 6.0 97 134-235 16-115 (149)
30 2z62_A TOLL-like receptor 4, v 99.1 9.4E-11 3.2E-15 96.1 8.2 109 113-226 52-165 (276)
31 1p9a_G Platelet glycoprotein I 99.1 1.7E-10 5.7E-15 95.7 9.5 119 111-234 75-196 (290)
32 2o6r_A Variable lymphocyte rec 99.1 1.7E-10 5.9E-15 88.4 8.8 111 111-226 26-140 (177)
33 1w8a_A SLIT protein; signaling 99.1 8.4E-11 2.9E-15 91.6 7.1 108 111-223 27-139 (192)
34 3rfs_A Internalin B, repeat mo 99.1 1.5E-10 5.2E-15 94.8 8.7 118 112-234 84-206 (272)
35 1ozn_A Reticulon 4 receptor; N 99.1 1.4E-10 4.8E-15 95.5 8.6 120 111-235 54-179 (285)
36 1ogq_A PGIP-2, polygalacturona 99.1 1.1E-10 3.7E-15 97.7 8.0 117 111-232 74-197 (313)
37 1a9n_A U2A', U2A'; complex (nu 99.1 1.2E-10 4.2E-15 89.2 7.6 95 134-235 18-115 (176)
38 1ozn_A Reticulon 4 receptor; N 99.1 2.2E-10 7.6E-15 94.2 9.3 117 113-234 105-226 (285)
39 2v9t_B SLIT homolog 2 protein 99.1 2.2E-10 7.4E-15 91.2 8.7 98 134-235 31-130 (220)
40 1p9a_G Platelet glycoprotein I 99.1 1.3E-10 4.5E-15 96.3 7.7 116 113-234 55-173 (290)
41 3rfs_A Internalin B, repeat mo 99.1 2.5E-10 8.6E-15 93.5 9.3 109 112-227 62-174 (272)
42 2xot_A Amphoterin-induced prot 99.1 1.9E-10 6.5E-15 98.2 8.7 109 113-226 64-179 (361)
43 2o6r_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 86.8 8.9 97 134-235 27-126 (177)
44 3o53_A Protein LRIM1, AGAP0063 99.1 2.6E-10 8.8E-15 95.5 8.5 117 113-235 120-239 (317)
45 3oja_A Leucine-rich immune mol 99.1 2.2E-10 7.7E-15 101.7 8.5 118 112-235 119-239 (487)
46 3g39_A Variable lymphocyte rec 99.1 2.7E-10 9.3E-15 87.0 7.8 88 134-226 29-118 (170)
47 3o6n_A APL1; leucine-rich repe 99.1 2E-10 6.7E-15 98.7 7.6 118 112-234 44-166 (390)
48 2v70_A SLIT-2, SLIT homolog 2 99.1 3.7E-10 1.3E-14 89.8 8.4 107 111-222 55-165 (220)
49 1h6u_A Internalin H; cell adhe 99.1 6.8E-10 2.3E-14 92.7 10.2 114 111-235 61-175 (308)
50 1ziw_A TOLL-like receptor 3; i 99.1 4.1E-10 1.4E-14 103.4 9.5 120 111-235 23-147 (680)
51 2xwt_C Thyrotropin receptor; s 99.1 2.5E-10 8.6E-15 91.6 7.2 112 112-229 54-175 (239)
52 4g8a_A TOLL-like receptor 4; l 99.1 3.2E-10 1.1E-14 102.5 8.5 98 133-235 50-150 (635)
53 2o6s_A Variable lymphocyte rec 99.1 8.5E-10 2.9E-14 86.6 9.9 97 134-235 27-126 (208)
54 2z80_A TOLL-like receptor 2, v 99.1 1.6E-10 5.5E-15 98.0 6.0 109 112-225 51-165 (353)
55 2z62_A TOLL-like receptor 4, v 99.0 3.1E-10 1.1E-14 92.9 7.4 117 113-234 28-150 (276)
56 2xot_A Amphoterin-induced prot 99.0 5.3E-10 1.8E-14 95.4 8.9 114 111-229 37-155 (361)
57 1xeu_A Internalin C; cellular 99.0 9.5E-10 3.3E-14 89.8 10.0 111 112-234 62-173 (263)
58 3v47_A TOLL-like receptor 5B a 99.0 4E-10 1.4E-14 98.4 8.2 110 113-227 275-388 (455)
59 3o6n_A APL1; leucine-rich repe 99.0 5.8E-10 2E-14 95.8 8.9 88 134-226 247-334 (390)
60 1w8a_A SLIT protein; signaling 99.0 5.7E-10 2E-14 86.8 8.1 97 134-235 28-128 (192)
61 1h6t_A Internalin B; cell adhe 99.0 1.2E-09 4E-14 90.6 10.3 113 111-235 88-202 (291)
62 2z7x_B TOLL-like receptor 1, v 99.0 4.5E-10 1.5E-14 99.9 8.3 107 111-224 19-129 (520)
63 2r9u_A Variable lymphocyte rec 99.0 3.3E-10 1.1E-14 86.9 6.5 90 138-235 15-107 (174)
64 2z7x_B TOLL-like receptor 1, v 99.0 7.3E-10 2.5E-14 98.6 9.6 111 117-235 4-117 (520)
65 2z63_A TOLL-like receptor 4, v 99.0 3.5E-10 1.2E-14 101.4 7.5 119 111-234 50-174 (570)
66 2z81_A CD282 antigen, TOLL-lik 99.0 2.1E-10 7.3E-15 102.5 6.1 117 112-233 25-148 (549)
67 3vq2_A TLR4, TOLL-like recepto 99.0 2.7E-10 9.3E-15 103.1 6.7 116 111-231 54-175 (606)
68 4ecn_A Leucine-rich repeat pro 99.0 4.4E-10 1.5E-14 106.2 8.4 119 111-234 489-619 (876)
69 1h6u_A Internalin H; cell adhe 99.0 1.5E-09 5.2E-14 90.6 10.7 72 159-234 147-218 (308)
70 3v47_A TOLL-like receptor 5B a 99.0 4.4E-10 1.5E-14 98.2 7.6 121 111-235 28-156 (455)
71 1h6t_A Internalin B; cell adhe 99.0 1.6E-09 5.3E-14 89.8 10.3 114 111-235 66-180 (291)
72 3rgz_A Protein brassinosteroid 99.0 7.9E-10 2.7E-14 103.2 9.4 96 134-234 441-539 (768)
73 3zyi_A Leucine-rich repeat-con 99.0 7E-10 2.4E-14 97.3 8.6 112 111-227 73-189 (452)
74 3zyj_A Leucine-rich repeat-con 99.0 9.4E-10 3.2E-14 96.1 9.1 112 111-227 62-178 (440)
75 3j0a_A TOLL-like receptor 5; m 99.0 7.7E-10 2.6E-14 104.3 9.2 121 111-235 22-150 (844)
76 4eco_A Uncharacterized protein 99.0 3.3E-10 1.1E-14 103.7 6.5 119 111-234 247-377 (636)
77 2wfh_A SLIT homolog 2 protein 99.0 1.3E-09 4.4E-14 84.9 9.0 96 134-235 30-128 (193)
78 3oja_B Anopheles plasmodium-re 99.0 4.7E-10 1.6E-14 101.9 7.0 87 134-225 74-162 (597)
79 3oja_B Anopheles plasmodium-re 99.0 9.3E-10 3.2E-14 99.9 8.8 106 114-226 233-340 (597)
80 4ecn_A Leucine-rich repeat pro 99.0 6.8E-10 2.3E-14 104.9 7.6 119 111-235 446-597 (876)
81 2xwt_C Thyrotropin receptor; s 99.0 8.9E-10 3E-14 88.4 7.3 109 112-227 79-197 (239)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1.4E-09 4.8E-14 97.9 9.2 107 111-224 50-160 (562)
83 3t6q_A CD180 antigen; protein- 99.0 7.7E-10 2.6E-14 100.2 7.5 110 111-225 31-144 (606)
84 4eco_A Uncharacterized protein 99.0 5.7E-10 2E-14 102.1 6.5 118 111-234 204-354 (636)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1.2E-09 4.3E-14 98.2 8.5 112 116-235 34-148 (562)
86 2z66_A Variable lymphocyte rec 99.0 5E-10 1.7E-14 93.0 5.5 117 112-232 125-246 (306)
87 3g39_A Variable lymphocyte rec 99.0 8.7E-10 3E-14 84.2 6.3 90 138-235 12-104 (170)
88 2id5_A Lingo-1, leucine rich r 98.9 1.2E-09 4.2E-14 96.1 7.8 108 111-223 30-141 (477)
89 3rgz_A Protein brassinosteroid 98.9 2.3E-09 7.7E-14 100.2 9.9 117 112-233 441-562 (768)
90 4fmz_A Internalin; leucine ric 98.9 3.9E-09 1.3E-13 89.0 10.3 113 112-234 65-178 (347)
91 1m9s_A Internalin B; cell inva 98.9 3.1E-09 1.1E-13 96.8 10.3 111 112-234 86-198 (605)
92 2z66_A Variable lymphocyte rec 98.9 1E-09 3.4E-14 91.2 6.4 110 111-223 26-139 (306)
93 1xku_A Decorin; proteoglycan, 98.9 5.8E-09 2E-13 87.5 11.1 117 111-234 50-172 (330)
94 1xku_A Decorin; proteoglycan, 98.9 1.9E-09 6.3E-14 90.5 8.0 108 113-227 171-280 (330)
95 3zyi_A Leucine-rich repeat-con 98.9 2.2E-09 7.6E-14 94.0 8.7 61 112-176 98-160 (452)
96 2z80_A TOLL-like receptor 2, v 98.9 1.7E-09 5.7E-14 91.7 7.6 97 134-235 51-151 (353)
97 3o53_A Protein LRIM1, AGAP0063 98.9 5.2E-10 1.8E-14 93.7 4.2 115 112-233 143-262 (317)
98 3zyj_A Leucine-rich repeat-con 98.9 2.4E-09 8.1E-14 93.6 8.6 42 182-225 181-222 (440)
99 1o6v_A Internalin A; bacterial 98.9 2.3E-09 7.9E-14 94.3 8.5 110 113-234 46-157 (466)
100 1ds9_A Outer arm dynein; leuci 98.9 8.3E-11 2.8E-15 91.9 -1.6 105 112-225 47-155 (198)
101 1xeu_A Internalin C; cellular 98.9 5E-09 1.7E-13 85.5 9.0 83 134-226 62-144 (263)
102 2ft3_A Biglycan; proteoglycan, 98.9 4.6E-09 1.6E-13 88.3 8.8 106 111-223 52-160 (332)
103 3oja_A Leucine-rich immune mol 98.9 2.5E-09 8.4E-14 94.9 7.4 116 113-235 99-216 (487)
104 2z81_A CD282 antigen, TOLL-lik 98.9 2.1E-09 7.2E-14 96.1 6.6 97 134-235 25-125 (549)
105 3sfz_A APAF-1, apoptotic pepti 98.9 1.6E-09 5.5E-14 105.3 5.9 81 4-98 366-453 (1249)
106 3t6q_A CD180 antigen; protein- 98.9 3.1E-09 1.1E-13 96.2 7.4 119 111-234 55-178 (606)
107 1m9s_A Internalin B; cell inva 98.9 5.8E-09 2E-13 94.9 9.1 114 111-235 63-177 (605)
108 2ft3_A Biglycan; proteoglycan, 98.9 3.4E-09 1.2E-13 89.0 7.1 114 114-235 34-149 (332)
109 1ds9_A Outer arm dynein; leuci 98.9 1.3E-10 4.3E-15 90.9 -1.9 94 134-235 47-142 (198)
110 4glp_A Monocyte differentiatio 98.8 9.3E-10 3.2E-14 91.8 2.9 65 159-226 220-288 (310)
111 2id5_A Lingo-1, leucine rich r 98.8 4.7E-09 1.6E-13 92.4 7.6 88 134-226 103-192 (477)
112 1wwl_A Monocyte differentiatio 98.8 1.2E-08 4E-13 85.1 9.4 111 111-226 119-244 (312)
113 1ziw_A TOLL-like receptor 3; i 98.8 1.1E-08 3.8E-13 93.8 9.3 97 134-235 24-123 (680)
114 1wwl_A Monocyte differentiatio 98.8 1.3E-08 4.3E-13 85.0 8.4 68 160-228 198-271 (312)
115 3bz5_A Internalin-J, INLJ; leu 98.8 1.2E-08 4.2E-13 89.8 8.7 99 113-225 42-142 (457)
116 2ifg_A High affinity nerve gro 98.8 9.4E-09 3.2E-13 86.8 7.3 86 134-224 30-117 (347)
117 4fmz_A Internalin; leucine ric 98.8 3.4E-08 1.2E-12 83.2 10.3 113 111-234 86-200 (347)
118 4glp_A Monocyte differentiatio 98.8 2.1E-08 7.3E-13 83.5 8.8 117 111-232 115-247 (310)
119 3cvr_A Invasion plasmid antige 98.7 1.6E-08 5.5E-13 91.4 7.9 41 189-230 210-251 (571)
120 3j0a_A TOLL-like receptor 5; m 98.7 1.1E-08 3.6E-13 96.6 7.0 98 133-235 22-125 (844)
121 2ast_B S-phase kinase-associat 98.7 5.6E-09 1.9E-13 87.5 4.5 120 111-235 91-224 (336)
122 1o6v_A Internalin A; bacterial 98.7 5.2E-08 1.8E-12 85.6 10.9 63 159-224 261-323 (466)
123 3bz5_A Internalin-J, INLJ; leu 98.7 1.7E-08 6E-13 88.8 7.5 89 134-235 41-129 (457)
124 2ca6_A RAN GTPase-activating p 98.7 3.2E-08 1.1E-12 84.8 7.2 96 134-229 186-298 (386)
125 2ifg_A High affinity nerve gro 98.7 3.2E-08 1.1E-12 83.5 6.8 76 154-231 23-101 (347)
126 2ast_B S-phase kinase-associat 98.7 9.3E-09 3.2E-13 86.2 3.4 105 112-220 141-257 (336)
127 3g06_A SSPH2 (leucine-rich rep 98.6 1E-07 3.6E-12 87.0 9.9 57 163-223 241-297 (622)
128 3cvr_A Invasion plasmid antige 98.6 3.6E-08 1.2E-12 89.1 6.6 105 114-235 121-232 (571)
129 1jl5_A Outer protein YOPM; leu 98.6 3.9E-08 1.3E-12 86.4 6.4 81 135-226 131-211 (454)
130 1vt4_I APAF-1 related killer D 98.6 8.6E-09 3E-13 97.7 2.2 73 4-91 357-437 (1221)
131 1jl5_A Outer protein YOPM; leu 98.6 1.5E-07 5E-12 82.8 8.8 109 111-235 89-197 (454)
132 3g06_A SSPH2 (leucine-rich rep 98.6 1.2E-07 4.1E-12 86.5 8.3 107 112-235 180-286 (622)
133 2ca6_A RAN GTPase-activating p 98.6 1.9E-08 6.4E-13 86.2 2.6 117 112-229 121-268 (386)
134 4ay9_X Follicle-stimulating ho 98.4 3.9E-07 1.3E-11 77.1 6.9 113 111-227 102-219 (350)
135 1z6t_A APAF-1, apoptotic prote 98.4 3.1E-07 1.1E-11 83.0 6.4 77 5-95 367-450 (591)
136 3goz_A Leucine-rich repeat-con 98.2 9.5E-07 3.2E-11 75.0 5.3 113 113-226 109-241 (362)
137 3goz_A Leucine-rich repeat-con 98.2 1.8E-06 6.2E-11 73.3 6.5 111 114-225 52-182 (362)
138 1z7x_W Ribonuclease inhibitor; 98.2 7.3E-07 2.5E-11 77.7 3.1 87 134-223 55-155 (461)
139 1z7x_W Ribonuclease inhibitor; 98.1 1.8E-06 6.2E-11 75.2 5.2 112 112-224 2-127 (461)
140 4ay9_X Follicle-stimulating ho 98.1 6.5E-06 2.2E-10 69.5 7.1 116 111-230 28-174 (350)
141 3ogk_B Coronatine-insensitive 98.1 1.1E-06 3.7E-11 79.1 2.4 119 113-234 112-244 (592)
142 3un9_A NLR family member X1; l 98.0 2.4E-06 8.1E-11 73.2 3.8 110 114-224 127-253 (372)
143 2p1m_B Transport inhibitor res 98.0 2.5E-06 8.5E-11 76.6 3.0 120 112-234 104-236 (594)
144 3rw6_A Nuclear RNA export fact 97.9 1.8E-05 6.1E-10 64.6 6.8 62 160-223 167-233 (267)
145 3rw6_A Nuclear RNA export fact 97.9 1.4E-05 4.8E-10 65.2 6.0 80 134-217 169-258 (267)
146 3un9_A NLR family member X1; l 97.9 4.5E-06 1.6E-10 71.4 3.1 112 112-224 100-225 (372)
147 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4E-10 61.9 3.0 112 111-223 34-164 (185)
148 1io0_A Tropomodulin; LRR prote 97.7 1.5E-05 5.2E-10 61.3 2.8 90 134-224 35-137 (185)
149 3ogk_B Coronatine-insensitive 97.7 4.1E-05 1.4E-09 68.7 5.2 88 134-222 191-305 (592)
150 3sb4_A Hypothetical leucine ri 97.6 7.2E-05 2.4E-09 62.5 5.3 96 134-235 225-323 (329)
151 2ra8_A Uncharacterized protein 97.5 0.00036 1.2E-08 59.4 8.9 60 162-222 251-319 (362)
152 2ra8_A Uncharacterized protein 97.5 0.00011 3.6E-09 62.7 5.3 108 111-224 170-293 (362)
153 2p1m_B Transport inhibitor res 97.5 1.2E-05 4.3E-10 72.1 -0.8 108 112-220 129-245 (594)
154 3e4g_A ATP synthase subunit S, 97.4 0.0002 7E-09 54.5 5.3 86 134-224 60-154 (176)
155 3rfe_A Platelet glycoprotein I 96.9 0.0012 4.3E-08 47.5 5.0 52 167-220 12-65 (130)
156 3sb4_A Hypothetical leucine ri 96.6 0.0028 9.5E-08 52.7 5.5 100 112-217 225-328 (329)
157 3e4g_A ATP synthase subunit S, 96.1 0.02 6.8E-07 43.5 7.3 86 112-200 60-154 (176)
158 4fdw_A Leucine rich hypothetic 93.8 0.13 4.6E-06 43.9 6.9 90 134-226 270-361 (401)
159 4fdw_A Leucine rich hypothetic 93.7 0.12 4E-06 44.3 6.3 45 181-226 266-315 (401)
160 1pgv_A TMD-1, tropomodulin TMD 93.0 0.047 1.6E-06 42.2 2.4 110 112-222 40-169 (197)
161 3rfe_A Platelet glycoprotein I 92.8 0.086 2.9E-06 37.7 3.4 35 164-198 32-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 92.5 0.19 6.4E-06 38.7 5.2 86 134-220 40-136 (197)
163 4h09_A Hypothetical leucine ri 88.0 1.3 4.3E-05 37.0 7.0 60 157-217 280-340 (379)
164 4fs7_A Uncharacterized protein 87.5 0.53 1.8E-05 39.7 4.4 63 156-220 313-376 (394)
165 4h09_A Hypothetical leucine ri 81.4 2.1 7.1E-05 35.6 5.3 85 134-225 239-324 (379)
166 4gt6_A Cell surface protein; l 81.2 3.3 0.00011 34.7 6.5 62 157-220 305-367 (394)
167 4gt6_A Cell surface protein; l 81.2 2.7 9.2E-05 35.3 5.9 93 134-234 264-358 (394)
168 4fs7_A Uncharacterized protein 68.6 7.2 0.00025 32.6 5.3 67 157-226 291-358 (394)
169 1hqc_A RUVB; extended AAA-ATPa 36.9 3.2 0.00011 33.6 -2.2 30 39-68 289-324 (324)
170 2kzc_A Uncharacterized protein 27.0 52 0.0018 21.3 2.8 37 31-69 9-45 (85)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.50 E-value=4.5e-15 Score=133.84 Aligned_cols=85 Identities=21% Similarity=0.135 Sum_probs=72.0
Q ss_pred CCeeeeeccCCCCc------------------cCcCCCCCCCCCCcChHHHHHHHHhc--CCCC----C-ChHHHHHHHH
Q 043825 3 RPETSTSQWNIPTR------------------DEYQPEEYTNQRQISTRQLYQLWIAE--GFIP----D-NSEATAEKYL 57 (235)
Q Consensus 3 ~p~l~lSY~~Lp~~------------------cs~fP~d~~~~~~i~~~~Li~~Wiae--G~i~----g-~~e~~~~~~~ 57 (235)
+++|++||++||.+ ||+||+|+. |+ |++|+|+ ||+. + +++++|+ ||
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~----i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVD----IP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCC----EE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCe----ee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 57899999999974 899999999 98 8999999 9997 3 6899998 99
Q ss_pred HHHHhCCceeeeeeCCCCceeeEEeChhHHHHHHHhhcccce
Q 043825 58 EQLINRGFVEVKKRRAGGTIKTCSIRSRCWPSLLVVALNAEF 99 (235)
Q Consensus 58 ~~Li~r~ll~~~~~~~~g~~~~~~mhdlv~dla~~~~~~e~~ 99 (235)
++|+++||++....+ ...+|+|||+|||+|+.++.++++
T Consensus 435 ~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 999999999987643 445799999999999999987765
No 2
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=2.2e-12 Score=103.43 Aligned_cols=120 Identities=19% Similarity=0.178 Sum_probs=98.4
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 187 (235)
.+..+++|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|++|+|++|.++.+|.. +..+.+
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~----i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA----LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC----cChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 56788999999888775444444 8899999999988764 3345678999999999999999987665 688999
Q ss_pred CcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccH-hhcccCCC
Q 043825 188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD-EFWKMNKL 235 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~L 235 (235)
|++|++++|.+..+|..+. .+++|++|++++|.+..+|. .+..+++|
T Consensus 114 L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp CCEEECCSSCCCSCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hCeEeccCCcccccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 9999999999999999999 99999999999998888875 35555543
No 3
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=4e-12 Score=96.70 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc--hhcCCcccC
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL--SEIENLSLL 188 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L 188 (235)
..++.|.+..+..... ..+ +++|+.|.+.++.... .++..+..+++|++|++++|.++.+| ..+..+.+|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCC
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCC
Confidence 3455555555444321 222 5555555555555432 23444455555555555555555443 455555555
Q ss_pred cEEecccCCCcccch----HHHhcCccccEEeCcCCCCccccH
Q 043825 189 RYLKLNIPSLKSLPS----SFFNYLSNLYTLNMPFSDIDHIAD 227 (235)
Q Consensus 189 r~L~l~~~~l~~lP~----~i~~~L~~L~~L~l~~~~l~~lP~ 227 (235)
++|++++|.+..+|. .+. .+++|++|++++|.+.++|.
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 123 KSLDLFNCEVTNLNDYRESVFK-LLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CEEECCSSGGGTSTTHHHHHHT-TCSSCCEETTEETTSCBCCS
T ss_pred CEEEeeCCcCcchHHHHHHHHH-hCccCcEecCCCCChhhccc
Confidence 555555555555554 444 55555555555555555554
No 4
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.3e-12 Score=96.11 Aligned_cols=118 Identities=18% Similarity=0.134 Sum_probs=96.4
Q ss_pred CCCCeEEEEEEcCCCC-ccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcCCcc
Q 043825 111 SRKNVKRFCALEQQSD-FAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~-~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~ 186 (235)
.+..++++.+..+... ...+... +++|+.|.+.++.... . ..+..+++|++|++++|.+.. +|..++.+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-----C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-----c-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 4567888888887765 2233333 8999999999887753 2 667889999999999999986 888888899
Q ss_pred cCcEEecccCCCcccc--hHHHhcCccccEEeCcCCCCccccH----hhcccCCC
Q 043825 187 LLRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIAD----EFWKMNKL 235 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~L 235 (235)
+|++|++++|.+..+| ..++ .+++|++|++++|.+..+|. .++.+++|
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 9999999999999876 7888 99999999999998888875 56666654
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=1.7e-11 Score=103.44 Aligned_cols=117 Identities=17% Similarity=0.086 Sum_probs=80.5
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L 188 (235)
...+++|.+..+... ..+..+ +++|+.|.+.++.... ++..+..+++|++|++++|.+. .+|..++.+.+|
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 344555555555443 122223 6677777777766652 3445777777888888877644 667777888888
Q ss_pred cEEecccCC-CcccchHHHhcCccccEEeCcCC-CCccccHhhcccCCC
Q 043825 189 RYLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFS-DIDHIADEFWKMNKL 235 (235)
Q Consensus 189 r~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L 235 (235)
++|++++|. +..+|..++ ++++|++|++++| .++.+|.++++|++|
T Consensus 256 ~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp CEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred CEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 888888765 567888888 8888888888887 667888888888764
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=8.5e-12 Score=105.28 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=66.8
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHH---------hhccCccCeEEEeCCcccccchh
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKI---------CEMYKLLRALDLGYLVLNQYLSE 181 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~---------~~~l~~Lr~L~l~~~~l~~lp~~ 181 (235)
..+++|.+..+... ..+..+ +++|+.|.+.++.... .++.. +..+++|++|++++|.++.+|..
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~----~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 201 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT----ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC----CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc----ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence 34555555555444 122222 5555555555543322 12222 23366666666666666666666
Q ss_pred cCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC-CCccccHhhcccCCC
Q 043825 182 IENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS-DIDHIADEFWKMNKL 235 (235)
Q Consensus 182 i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~L 235 (235)
++.+.+|++|++++|.+..+|..++ ++++|++|++++| ....+|..++.+++|
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hcCCCCCCEEEccCCCCCcCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 6667777777777776666766666 6777777777766 445666666555543
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=9.1e-12 Score=99.22 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=95.7
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 187 (235)
.+..++.|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|++|+|++|.++.+|.. +..+.+
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 45678999988887764333344 8899999999888764 3467889999999999999999988876 578999
Q ss_pred CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCccccHh-hcccCCC
Q 043825 188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL 235 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L 235 (235)
|++|+|++|.+..++ ..+. .+++|++|+|++|.+..+|.. +..+++|
T Consensus 106 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 999999999998875 5677 899999999999988888763 5555543
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=1.2e-11 Score=103.58 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=91.1
Q ss_pred CCeEEEEEEcCCCCc--cccccc--CCCcceEEEec-CCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcc
Q 043825 113 KNVKRFCALEQQSDF--AYLDDY--YPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLS 186 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~--~~~~~~--~~~LrsL~~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~ 186 (235)
.+++++.+..+.... ..+..+ +++|+.|.+.+ +.... ..+..+.++++|++|++++|.+. .+|..++.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 578888888877664 344444 88899998884 55433 45667888888888888888887 7788888888
Q ss_pred cCcEEecccCCCc-ccchHHHhcCccccEEeCcCCCCc-cccHhhcccC
Q 043825 187 LLRYLKLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDID-HIADEFWKMN 233 (235)
Q Consensus 187 ~Lr~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~ 233 (235)
+|++|++++|.+. .+|..++ ++++|++|++++|.+. .+|..++++.
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred CCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 8888888888877 7888888 8888888888888776 7888887765
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=9.9e-12 Score=99.01 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=88.2
Q ss_pred CCCCeEEEEEEcCCCCccccc-cc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcc
Q 043825 111 SRKNVKRFCALEQQSDFAYLD-DY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~ 186 (235)
.+..+++|.+..+........ .+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.++.+|. .+..+.
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 345567888877776643222 23 8888888888877754 334567888888888888888886654 478888
Q ss_pred cCcEEecccCCCccc-chHHHhcCccccEEeCcCCCCccc-cHhhcccCCC
Q 043825 187 LLRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHI-ADEFWKMNKL 235 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L 235 (235)
+|++|++++|.+..+ |..+. .+++|++|++++|.+..+ |..+..+++|
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred CCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 888888888888877 45677 888888888888887777 5666666554
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=1.8e-11 Score=96.22 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=85.1
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 187 (235)
....+++|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|++|++++|.+..+|.. +..+.+
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS----LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc----cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 45577888887776653333223 7888888888776654 3344567788888888888888776654 578888
Q ss_pred CcEEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHh-hcccCCC
Q 043825 188 LRYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL 235 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L 235 (235)
|++|++++|.+..+|.. +. ++++|++|++++|.+..+|.. +.++++|
T Consensus 102 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 88888888888877765 46 788888888888877777664 4555443
No 11
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=1.1e-11 Score=95.16 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=85.2
Q ss_pred CCCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhc-CCcc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEI-ENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~ 186 (235)
....++.+.+..+.... .+.. .++|+.|.+.++.... + ..+..+++|+.|++++|.+..+|+.+ +.+.
T Consensus 17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 45667788877776652 2223 4488888888877652 3 45677888888888888888777554 7788
Q ss_pred cCcEEecccCCCcccch--HHHhcCccccEEeCcCCCCccccHh----hcccCCC
Q 043825 187 LLRYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDIDHIADE----FWKMNKL 235 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP~~----i~~L~~L 235 (235)
+|++|++++|.+..+|. .++ .+++|++|++++|.+..+|.. ++.+++|
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCcc
Confidence 88888888888888887 777 888888888888877777764 6666554
No 12
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=6.3e-12 Score=116.82 Aligned_cols=105 Identities=19% Similarity=0.126 Sum_probs=60.3
Q ss_pred CCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEE
Q 043825 113 KNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYL 191 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L 191 (235)
..++.|.+..+.......... +++|++|.+.++... .+|..|.++++|++|+|++|.++.+|..++.|.+|++|
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 445555555554442111112 566666666655554 23445566666666666666666666666666666666
Q ss_pred ecccCCCcccchHHHhcCccccEEeCcCCCCc
Q 043825 192 KLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 192 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 223 (235)
+|++|.++.+|.+++ +|++|++|+|++|.+.
T Consensus 299 ~L~~N~l~~lp~~~~-~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ECCSSCCCCCCSSTT-SCTTCCCEECTTSCCC
T ss_pred ECCCCCCCccChhhh-cCCCccEEeCCCCccC
Confidence 666666666666666 6666666666666544
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=3.5e-11 Score=94.01 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=71.4
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L 188 (235)
..+++++.+..+... ..+.+ +++|+.|.+.++.... ..+..+..+++|++|++++|.+. ..|..++.+++|
T Consensus 65 l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTS----DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBG----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCc----ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 445666666666443 22223 6677777776665532 23445566777777777777766 356667777777
Q ss_pred cEEecccCC-CcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 189 RYLKLNIPS-LKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 189 r~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
++|++++|. +..+| .+. .+++|++|++++|.+..+| .+..+++|
T Consensus 139 ~~L~L~~n~~i~~~~-~l~-~l~~L~~L~l~~n~i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM-PLK-TLPELKSLNIQFDGVHDYR-GIEDFPKL 183 (197)
T ss_dssp CEEECCSCTBCCCCG-GGG-GCSSCCEEECTTBCCCCCT-TGGGCSSC
T ss_pred CEEEccCCCCccccH-hhc-CCCCCCEEECCCCCCcChH-HhccCCCC
Confidence 777777776 66666 566 6777777777777666665 45555443
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=2.5e-11 Score=98.35 Aligned_cols=118 Identities=21% Similarity=0.223 Sum_probs=78.1
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 188 (235)
...+++|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.++.+|.. +..+.+|
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS----LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc----cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 3556666666665543232223 6677777776666653 3345567777788888888777766654 4677788
Q ss_pred cEEecccCCCcccch-HHHhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825 189 RYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDHIAD-EFWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~ 234 (235)
++|++++|.+..+|. .+. .+++|++|++++|.+..+|. .+..+++
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cEEECcCCcCCccCHHHcC-cCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 888888888777776 466 77888888888887777665 4444444
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=2.6e-11 Score=98.23 Aligned_cols=118 Identities=19% Similarity=0.126 Sum_probs=67.8
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L 188 (235)
+..+++|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|++|++++|.+..+|. .+..+.+|
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT----LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc----cCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 3456666666555543222223 5666666666655543 233445666666666666666665543 34566666
Q ss_pred cEEecccCCCcccchHH-HhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825 189 RYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIAD-EFWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~ 234 (235)
++|++++|.+..+|... . .+++|++|++++|.+..+|. .++.+++
T Consensus 110 ~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFD-RLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEcCCCcCCCcChhHhc-cCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 66666666666666553 4 56666666666666666654 3444443
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=1e-10 Score=91.30 Aligned_cols=114 Identities=10% Similarity=0.102 Sum_probs=95.4
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~~L 188 (235)
...++++.+..+.... .+.+ +++|+.|.+.++... ....+..+++|+.|++++|.+.. .|..++.+++|
T Consensus 43 l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~l~~n~~~------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCSC--CTTGGGCTTCSEEEEESCCCS------CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred cCCccEEeccCCCccC--hHHHhcCCCCCEEEccCCCCC------cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4568899999887762 2234 999999999998553 23478899999999999999984 78899999999
Q ss_pred cEEecccCCCcc-cchHHHhcCccccEEeCcCCC-CccccHhhcccCCC
Q 043825 189 RYLKLNIPSLKS-LPSSFFNYLSNLYTLNMPFSD-IDHIADEFWKMNKL 235 (235)
Q Consensus 189 r~L~l~~~~l~~-lP~~i~~~L~~L~~L~l~~~~-l~~lP~~i~~L~~L 235 (235)
++|++++|.+.. .|..++ ++++|++|++++|. +..+| .+..+++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~-~l~~l~~L 161 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM-PLKTLPEL 161 (197)
T ss_dssp CEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred CEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence 999999999884 788899 99999999999996 99998 57777664
No 17
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=5.1e-11 Score=90.51 Aligned_cols=118 Identities=17% Similarity=0.091 Sum_probs=99.0
Q ss_pred CCCCeEEEEEEcCCCC-ccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcCCcc
Q 043825 111 SRKNVKRFCALEQQSD-FAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~-~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~ 186 (235)
.+..+++|.+..+... ...+..+ +++|+.|.+.++.... . ..+..+++|++|++++|.+.. +|..+..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-----C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-----h-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 5678999999888765 2233333 8999999999988763 3 677899999999999999986 788888899
Q ss_pred cCcEEecccCCCcccc--hHHHhcCccccEEeCcCCCCccccH----hhcccCCC
Q 043825 187 LLRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIAD----EFWKMNKL 235 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~L 235 (235)
+|++|++++|.+..+| ..+. .+++|++|++++|.+..+|. .+..+++|
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCEEeccCCccCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 9999999999999987 7888 99999999999999888886 67777654
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.22 E-value=1.8e-11 Score=110.97 Aligned_cols=120 Identities=18% Similarity=0.078 Sum_probs=76.8
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 187 (235)
.+..++++.+..+.........+ +++|++|.+.++.... ..+..|.++++|++|++++|.+..+ |..++.+.+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 44667777777766653333333 6777777777665543 2345567777777777777776655 666777777
Q ss_pred CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCc--cccHhhcccCCC
Q 043825 188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDID--HIADEFWKMNKL 235 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~L 235 (235)
|++|++++|.+..+| ..++ ++++|++|++++|.+. .+|..++++++|
T Consensus 106 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred CCEEEccCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 777777777766665 4566 6777777777777554 456666666554
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=6e-11 Score=94.98 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=86.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchHH-HhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSSF-FNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~ 211 (235)
.++++.|.+.++.... ..+..|..+++|+.|+|++|.+..+|.. +..+.+|++|+|++|.++.+|... . .+++
T Consensus 39 ~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD-RLVH 113 (229)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred CCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC-cchh
Confidence 7899999999988875 4467789999999999999999988754 689999999999999999998775 6 8999
Q ss_pred ccEEeCcCCCCccccHhhcccCCC
Q 043825 212 LYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
|++|++++|.+..+|..+..+++|
T Consensus 114 L~~L~Ls~N~l~~lp~~~~~l~~L 137 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGIERLTHL 137 (229)
T ss_dssp CCEEECCSSCCCSCCTTGGGCTTC
T ss_pred hCeEeccCCcccccCcccccCCCC
Confidence 999999999999999988888765
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.20 E-value=2.9e-11 Score=109.46 Aligned_cols=120 Identities=18% Similarity=0.084 Sum_probs=91.8
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~ 187 (235)
.+..+++|.+..+.........+ +++|+.|.+.++.... ..+..|.++++|++|+|++|.++.+|. .+..+.+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 56788899888887764333444 8889999998887753 335578888899999999988887764 5788888
Q ss_pred CcEEecccCCCcccchH-HHhcCccccEEeCcCCCCc--cccHhhcccCCC
Q 043825 188 LRYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDID--HIADEFWKMNKL 235 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~L 235 (235)
|++|++++|.++.+|+. ++ ++++|++|++++|.+. .+|..++.+++|
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred CCEEECCCCcCCCCChhhhh-cCcccCeeccccCccccCCCchhhccchhh
Confidence 99999988888888764 67 8888888888888665 356666666554
No 21
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=8.6e-11 Score=91.72 Aligned_cols=104 Identities=20% Similarity=0.184 Sum_probs=63.6
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L 188 (235)
+..++.|.+..+.... .+..+ +++|+.|.+.++.... ..+..|..++.|+.|+|++|.++.+|. .+..+.+|
T Consensus 30 ~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIST----LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCE----eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 4456666666665542 22233 6667777666666653 234456666777777777777665543 46666677
Q ss_pred cEEecccCCCcccchH-HHhcCccccEEeCcCCC
Q 043825 189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSD 221 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~ 221 (235)
++|+|++|.+..+|.. +. .+++|++|++++|.
T Consensus 105 ~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFN-DLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCCCBCCTTTTT-TCTTCCEEECCSSC
T ss_pred CEEECCCCCCCeeChhhhh-cCccccEEEeCCCC
Confidence 7777777766666654 44 66677777776663
No 22
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=2.2e-11 Score=113.19 Aligned_cols=96 Identities=25% Similarity=0.159 Sum_probs=88.4
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
++.|+.|.+.++... .++..+.++++|+.|+|++|.++.+|..++.|.+|++|+|++|.++.+|.+++ +|.+|+
T Consensus 223 l~~L~~L~Ls~n~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~ 296 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-----NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-SCFQLK 296 (727)
T ss_dssp CCCCCEEECTTSCCS-----CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG-GGTTCS
T ss_pred CCCCcEEECCCCCCC-----CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc-CCCCCC
Confidence 789999999988876 34556669999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCcCCCCccccHhhcccCCC
Q 043825 214 TLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 214 ~L~l~~~~l~~lP~~i~~L~~L 235 (235)
+|+|++|.+..+|.++++|++|
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTC
T ss_pred EEECCCCCCCccChhhhcCCCc
Confidence 9999999999999999988875
No 23
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=5.9e-11 Score=107.34 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=92.4
Q ss_pred CeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEE
Q 043825 114 NVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYL 191 (235)
Q Consensus 114 ~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L 191 (235)
.++.|.+..+.... .+.+ +++|+.|.+.++... .+|..+..+++|+.|+|++|.++.+| .++.+++|++|
T Consensus 442 ~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSS--CCCGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCC--CcCccccccCcEeecCccccc-----ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEE
Confidence 47778888777663 2235 899999999998886 45678999999999999999999988 89999999999
Q ss_pred ecccCCCccc--chHHHhcCccccEEeCcCCCCccccHhh
Q 043825 192 KLNIPSLKSL--PSSFFNYLSNLYTLNMPFSDIDHIADEF 229 (235)
Q Consensus 192 ~l~~~~l~~l--P~~i~~~L~~L~~L~l~~~~l~~lP~~i 229 (235)
+|++|.++.+ |..++ .+++|++|++++|.+..+|+.+
T Consensus 514 ~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCT
T ss_pred ECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCCccHH
Confidence 9999999988 89999 9999999999999888877644
No 24
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=5.6e-11 Score=107.50 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=83.9
Q ss_pred CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccE
Q 043825 135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYT 214 (235)
Q Consensus 135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~ 214 (235)
..|+.|.+.++.... +|. +..+++|+.|+|++|.++.+|..++.+.+|++|+|++|.++.+| .++ ++++|++
T Consensus 441 ~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~-~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA-NLPRLQE 512 (567)
T ss_dssp TTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT-TCSSCCE
T ss_pred cCceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccC-CCCCCcE
Confidence 467889888887763 444 89999999999999999999999999999999999999999999 899 9999999
Q ss_pred EeCcCCCCccc--cHhhcccCCC
Q 043825 215 LNMPFSDIDHI--ADEFWKMNKL 235 (235)
Q Consensus 215 L~l~~~~l~~l--P~~i~~L~~L 235 (235)
|+|++|.+..+ |..++.|++|
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTC
T ss_pred EECCCCCCCCCCCcHHHhcCCCC
Confidence 99999999888 8999988875
No 25
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=9e-11 Score=90.12 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=80.2
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSS-FFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~ 211 (235)
.++++.|.+.++.... ..+..|..+++|+.|+|++|.++.+|.. +..+.+|++|+|++|.+..+|.. +. .+++
T Consensus 32 ~~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~ 106 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD-NLKS 106 (174)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred CCCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhc-cccC
Confidence 7899999999988865 3467889999999999999999988876 58999999999999999999987 77 9999
Q ss_pred ccEEeCcCCCCccccHhhc
Q 043825 212 LYTLNMPFSDIDHIADEFW 230 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~~i~ 230 (235)
|++|++++|.+...|..+.
T Consensus 107 L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 107 LTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp CSEEECCSSCBCTTBGGGH
T ss_pred CCEEEeCCCCcccccccHH
Confidence 9999999998877665443
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=6.4e-11 Score=106.29 Aligned_cols=118 Identities=18% Similarity=0.094 Sum_probs=56.8
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L 188 (235)
+..+++|.+..+.........+ +++|++|.+.++.... ..+..|.++++|++|++++|.+..+| ..++.+.+|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 4456666665555442222222 5566666665554432 22334555555555555555554333 344555555
Q ss_pred cEEecccCCCcccch-HHHhcCccccEEeCcCCCCcc--ccHhhcccCC
Q 043825 189 RYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDH--IADEFWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~--lP~~i~~L~~ 234 (235)
++|++++|.+..+|. .++ ++++|++|++++|.+.. +|..++++++
T Consensus 103 ~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 150 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (570)
T ss_dssp CEEECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred ccccccccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCC
Confidence 555555555444443 344 45555555555554332 3444444443
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.15 E-value=1.4e-10 Score=94.83 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 188 (235)
...+++|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.+..+|.. +..+.+|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS----LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe----eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 3455666665555442222222 5666666666655543 2334556677777777777777666544 5667777
Q ss_pred cEEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHh-hcccCC
Q 043825 189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADE-FWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~ 234 (235)
++|++++|.+..+|.. +. ++++|++|++++|.+..+|.. +..+++
T Consensus 160 ~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp CEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 7777777777766654 45 677777777777766666653 344443
No 28
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.15 E-value=1.5e-10 Score=94.73 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=70.1
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCc
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLR 189 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr 189 (235)
..+++|.+..+.........+ +++|++|.+.++.... ..+..|..+++|+.|++++|.+..+|. .++.+.+|+
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA----LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC----CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc----CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 455555555544432122222 5566666666555543 223455667777777777777665543 456777777
Q ss_pred EEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHh-hcccCC
Q 043825 190 YLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADE-FWKMNK 234 (235)
Q Consensus 190 ~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~ 234 (235)
+|++++|.+..+|.. +. .+++|++|++++|.+..+|.. +.++++
T Consensus 137 ~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFD-KLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp EEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred EEECCCCcCCccCHhHcc-CCcccceeEecCCcCcEeChhHhccCCC
Confidence 777777777777665 45 777777777777777766653 444444
No 29
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=4.4e-11 Score=89.05 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=82.8
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcc-cchHHHhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKS-LPSSFFNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~-lP~~i~~~L~~L 212 (235)
.++++.|.+.++..... .++..+..+++|+.|++++|.+..+ ..++.+.+|++|++++|.+.. +|..++ ++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTC
T ss_pred CccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCC
Confidence 57899999988876511 3456778999999999999999877 889999999999999999987 888888 89999
Q ss_pred cEEeCcCCCCcccc--HhhcccCCC
Q 043825 213 YTLNMPFSDIDHIA--DEFWKMNKL 235 (235)
Q Consensus 213 ~~L~l~~~~l~~lP--~~i~~L~~L 235 (235)
++|++++|.+..+| ..++.+++|
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCC
Confidence 99999999988876 677777764
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=9.4e-11 Score=96.05 Aligned_cols=109 Identities=19% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCc
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLR 189 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr 189 (235)
..+++|.+..+.........+ +++|+.|.+.++.... ..+..+.++++|+.|++++|.+..++. .++.+.+|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc----cChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 345555555444432222222 5555555555554432 223445666666666666666655443 466666677
Q ss_pred EEecccCCCcc--cchHHHhcCccccEEeCcCCCCcccc
Q 043825 190 YLKLNIPSLKS--LPSSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 190 ~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
+|++++|.+.. +|..+. ++++|++|++++|.+..+|
T Consensus 128 ~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp EEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEEC
T ss_pred EEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCC
Confidence 77777766654 566666 6777777777777666554
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=1.7e-10 Score=95.71 Aligned_cols=119 Identities=18% Similarity=0.039 Sum_probs=84.1
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 187 (235)
....++.|.+..+.... .+... +++|+.|.+.++.... ..+..|..+++|+.|++++|.+..+|.. +..+.+
T Consensus 75 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~----l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS----LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCC----CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcc----cCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 44566777776666552 22222 7778888887777654 2345677888888888888888766654 567888
Q ss_pred CcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
|++|++++|.++.+|..+..++++|++|++++|.+..+|.++..+.+
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~ 196 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccccc
Confidence 88888888888888876532688888888888888888877766544
No 32
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=1.7e-10 Score=88.37 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=84.6
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 187 (235)
....+++|.+..+.........+ +++|+.|.+.++.... ..+..+..+++|+.|++++|.++.+|.. +..+.+
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE----eChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 45678888888877653333333 7889999988887764 3345578888999999999998877664 678889
Q ss_pred CcEEecccCCCcccchHH-HhcCccccEEeCcCCCCcccc
Q 043825 188 LRYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP 226 (235)
|++|++++|.+..+|..+ . .+++|++|++++|.+...+
T Consensus 102 L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFD-RLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCBCCCH
T ss_pred cCEEECcCCcceEeCHHHhc-CCcccCEEEecCCCeeccC
Confidence 999999999988888875 5 7889999999998655433
No 33
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=8.4e-11 Score=91.58 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=78.9
Q ss_pred CCCCeEEEEEEcCCCCcccccc-c--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDD-Y--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~-~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~ 186 (235)
.+..++.|.+..+......... + +++|+.|.+.++.... ..+..|..+++|+.|++++|.++.+|. .+..+.
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC----cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence 3447788888777665333321 3 7888888888877764 345677888888888888888886554 477888
Q ss_pred cCcEEecccCCCccc-chHHHhcCccccEEeCcCCCCc
Q 043825 187 LLRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~ 223 (235)
+|++|++++|.+..+ |..+. .+++|++|++++|.+.
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCCBC
T ss_pred CCCEEECCCCcCCeeCHHHhh-cCCCCCEEEeCCCCcc
Confidence 888888888888755 55677 8888888888888543
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.13 E-value=1.5e-10 Score=94.84 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=72.0
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 188 (235)
...+++|.+..+.........+ +++|+.|.+.++.... ..+..+..+++|++|++++|.+..+|.. ++.+.+|
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS----LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc----cCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 3456666666555442222222 5666666666665543 2334466677777777777777655543 4667777
Q ss_pred cEEecccCCCcccchHH-HhcCccccEEeCcCCCCccccHh-hcccCC
Q 043825 189 RYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIADE-FWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~ 234 (235)
++|++++|.+..+|... + .+++|++|++++|.+..+|.. +..+++
T Consensus 160 ~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 77777777777666553 5 677777777777766666543 344444
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.13 E-value=1.4e-10 Score=95.45 Aligned_cols=120 Identities=19% Similarity=0.170 Sum_probs=81.9
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCC-CCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSE-SDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~ 186 (235)
....+++|.+..+......+..+ +++|+.|.+.++. ... ..+..+..+++|+.|++++|.+..+ |..+..+.
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS----VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc----cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 34566777776665543223333 6777777777765 332 2355677788888888888887755 56677888
Q ss_pred cCcEEecccCCCcccchH-HHhcCccccEEeCcCCCCccccHh-hcccCCC
Q 043825 187 LLRYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL 235 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L 235 (235)
+|++|++++|.+..+|.. +. ++++|++|++++|.+..+|.. +..+++|
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCEEECCCCcccccCHhHhc-cCCCccEEECCCCcccccCHHHhcCcccc
Confidence 888888888888877765 56 788888888888877777753 5555543
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.12 E-value=1.1e-10 Score=97.74 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=90.2
Q ss_pred CCCCeEEEEEEc-CCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcc
Q 043825 111 SRKNVKRFCALE-QQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~-~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~ 186 (235)
....+++|.+.. +......+..+ +++|+.|.+.++.... ..+..+.++++|++|++++|.+. .+|..++.++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 346788888884 54443344444 8899999998887753 45667888889999999998887 7788888888
Q ss_pred cCcEEecccCCCc-ccchHHHhcCc-cccEEeCcCCCCc-cccHhhccc
Q 043825 187 LLRYLKLNIPSLK-SLPSSFFNYLS-NLYTLNMPFSDID-HIADEFWKM 232 (235)
Q Consensus 187 ~Lr~L~l~~~~l~-~lP~~i~~~L~-~L~~L~l~~~~l~-~lP~~i~~L 232 (235)
+|++|++++|.+. .+|..++ ++. +|++|++++|.+. .+|..+..+
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCC
Confidence 9999999988887 8888888 887 8888888888665 667666554
No 37
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=1.2e-10 Score=89.21 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=80.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHH-HhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSF-FNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~L 212 (235)
.++++.|.+.++.... ++......++|+.|++++|.++.+ +.++.+.+|++|++++|.+..+|+.+ . .+++|
T Consensus 18 ~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ-ALPDL 90 (176)
T ss_dssp TTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH-HCTTC
T ss_pred cCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh-cCCCC
Confidence 7899999999987763 333333344999999999999987 67999999999999999999999776 7 99999
Q ss_pred cEEeCcCCCCccccH--hhcccCCC
Q 043825 213 YTLNMPFSDIDHIAD--EFWKMNKL 235 (235)
Q Consensus 213 ~~L~l~~~~l~~lP~--~i~~L~~L 235 (235)
++|++++|.+..+|. .++.+++|
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSL 115 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCC
Confidence 999999999999997 77777654
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.11 E-value=2.2e-10 Score=94.25 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=68.0
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCc
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLR 189 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr 189 (235)
..++.|.+..+.........+ +++|+.|.+.++.... ..+..+..+++|+.|++++|.+..+|. .+..+.+|+
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc----cCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 455566555554442222222 5666666666655543 223345666667777777766665554 366666677
Q ss_pred EEecccCCCccc-chHHHhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825 190 YLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHIAD-EFWKMNK 234 (235)
Q Consensus 190 ~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~ 234 (235)
+|++++|.+..+ |..+. ++++|++|++++|.+..+|. .+..+++
T Consensus 181 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred EEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 777777666655 55566 66777777777776666654 2444443
No 39
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.11 E-value=2.2e-10 Score=91.20 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=83.2
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L 212 (235)
.++++.|.+.++.... ..+..|..+++|+.|+|++|.+..+ |..+..+.+|++|+|++|.+..+|..+...+++|
T Consensus 31 ~~~l~~L~l~~n~i~~----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 31 PETITEIRLEQNTIKV----IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp CTTCCEEECCSSCCCE----ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCCC----cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 6789999999988764 3345789999999999999999866 7889999999999999999999998763289999
Q ss_pred cEEeCcCCCCcccc-HhhcccCCC
Q 043825 213 YTLNMPFSDIDHIA-DEFWKMNKL 235 (235)
Q Consensus 213 ~~L~l~~~~l~~lP-~~i~~L~~L 235 (235)
++|+|++|.+..+| ..+..+++|
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCEeCHHHcCCCCCC
Confidence 99999999888774 456666554
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.11 E-value=1.3e-10 Score=96.32 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=78.4
Q ss_pred CCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEE
Q 043825 113 KNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYL 191 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L 191 (235)
..+++|.+..+..........+++|++|.+.++... .++..+..++.|++|++++|.++.+| ..+..+.+|++|
T Consensus 55 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 445555555554432111111666777777666654 34455677888888888888888765 567888888888
Q ss_pred ecccCCCcccchHH-HhcCccccEEeCcCCCCccccHhh-cccCC
Q 043825 192 KLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIADEF-WKMNK 234 (235)
Q Consensus 192 ~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~~i-~~L~~ 234 (235)
++++|.+..+|..+ . .+++|+.|++++|.+..+|.++ .++++
T Consensus 130 ~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp ECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred ECCCCCCCccChhhcc-cccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 88888888887764 5 7888888888888888887654 44544
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.11 E-value=2.5e-10 Score=93.53 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=59.2
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 188 (235)
...+++|.+..+.... .+.+ +++|+.|.+.++.... ..+..+..+++|++|++++|.+..+|.. ++.+.+|
T Consensus 62 l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQS----LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp CTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCc----cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 3455555555554432 1222 5566666665555443 2233455566666666666666544433 4556666
Q ss_pred cEEecccCCCcccchHH-HhcCccccEEeCcCCCCccccH
Q 043825 189 RYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIAD 227 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~ 227 (235)
++|++++|.+..+|... + ++++|++|++++|.+..+|.
T Consensus 136 ~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCT
T ss_pred CEEECCCCccCccCHHHhc-cCccCCEEECCCCCcCccCH
Confidence 66666666666555443 4 56666666666665555544
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=1.9e-10 Score=98.16 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCc
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLR 189 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr 189 (235)
.+++.|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|+.|+|++|.+..+ |..+..+.+|+
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT----LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc----CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 345555555544442222222 5556666665555432 2233456666666666666666544 45566666666
Q ss_pred EEecccCCCcccchHH----HhcCccccEEeCcCCCCcccc
Q 043825 190 YLKLNIPSLKSLPSSF----FNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 190 ~L~l~~~~l~~lP~~i----~~~L~~L~~L~l~~~~l~~lP 226 (235)
+|+|++|.+..+|..+ . .+++|++|+|++|.+..+|
T Consensus 140 ~L~L~~N~l~~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 140 KLYLSQNQISRFPVELIKDGN-KLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp EEECCSSCCCSCCGGGTC-----CTTCCEEECCSSCCCCCC
T ss_pred EEECCCCcCCeeCHHHhcCcc-cCCcCCEEECCCCCCCccC
Confidence 6666666666666554 3 5666666666666666665
No 43
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=3.2e-10 Score=86.82 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=82.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSS-FFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~ 211 (235)
.++++.|.+.++.... ..+..+..+++|++|++++|.++.+|.. +..+.+|++|++++|.++.+|.. +. ++++
T Consensus 27 ~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD-KLTQ 101 (177)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred CCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh-CCcc
Confidence 7899999999988764 3455678999999999999999988765 68999999999999999999876 46 8999
Q ss_pred ccEEeCcCCCCccccHhh-cccCCC
Q 043825 212 LYTLNMPFSDIDHIADEF-WKMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~~i-~~L~~L 235 (235)
|++|++++|.+..+|..+ ..+++|
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCEEECcCCcceEeCHHHhcCCccc
Confidence 999999999999998764 555543
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.08 E-value=2.6e-10 Score=95.53 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=80.1
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHH-hhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKI-CEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr 189 (235)
..++++.+..+.......... +++|+.|.+.++.... ..+.. +..++.|++|++++|.++.+|... .+.+|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~ 194 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLK 194 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc----ccHHHHhhccCcCCEEECCCCcCccccccc-ccccCC
Confidence 456666666665553222223 6777787777776653 22333 346778888888888877665433 477888
Q ss_pred EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
+|++++|.+..+|..+. .+++|++|++++|.+..+|..+..+++|
T Consensus 195 ~L~Ls~N~l~~l~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 195 TLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVLIEKALRFSQNL 239 (317)
T ss_dssp EEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred EEECCCCcCCcchhhhc-ccCcccEEECcCCcccchhhHhhcCCCC
Confidence 88888888888887777 8888888888888777888777666554
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=2.2e-10 Score=101.65 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=88.3
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhh-ccCccCeEEEeCCcccccchhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICE-MYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
...+++|.+..+......+..+ +++|+.|.+.++.... ..+..+. .++.|+.|+|++|.+..+|.. ..+++|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L 193 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL 193 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----cChHHHhhhCCcccEEecCCCcccccccc-ccCCCC
Confidence 3567788877777654333333 7888888888877654 3344444 788888888888888877553 358888
Q ss_pred cEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
++|++++|.+..+|+.++ .+++|++|++++|.+..+|..++.+++|
T Consensus 194 ~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 194 KTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp CEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred CEEECCCCCCCCCCHhHc-CCCCccEEEecCCcCcccchhhccCCCC
Confidence 999999988888888888 8889999999988888888877766654
No 46
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=2.7e-10 Score=87.01 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSS-FFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~ 211 (235)
.++++.|.+.++.... ..+..|..+++|++|+|++|.++.+|.. +..+.+|++|+|++|.++.+|.. +. ++++
T Consensus 29 ~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~ 103 (170)
T 3g39_A 29 PTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD-NLKS 103 (170)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred CCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhc-CCCC
Confidence 7889999999988875 3467789999999999999999988775 58999999999999999999885 67 9999
Q ss_pred ccEEeCcCCCCcccc
Q 043825 212 LYTLNMPFSDIDHIA 226 (235)
Q Consensus 212 L~~L~l~~~~l~~lP 226 (235)
|++|+|++|.+.-.+
T Consensus 104 L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 104 LTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCEEECCSSCBCTTB
T ss_pred CCEEEeCCCCCCCCc
Confidence 999999999665433
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.07 E-value=2e-10 Score=98.75 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=74.2
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L 188 (235)
...++++.+..+.........+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.+..+| ..++.+.+|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc----cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3567777777665542222212 6777777777666543 23346677777777777777776553 446777777
Q ss_pred cEEecccCCCcccchHH-HhcCccccEEeCcCCCCccccH-hhcccCC
Q 043825 189 RYLKLNIPSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIAD-EFWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~ 234 (235)
++|++++|.+..+|..+ . ++++|++|++++|.+..+|. .++.+++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred CEEECCCCccCcCCHHHhc-CCCCCcEEECCCCccCccChhhccCCCC
Confidence 77777777777777664 5 67777777777776665543 3555544
No 48
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.07 E-value=3.7e-10 Score=89.79 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=91.2
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 187 (235)
....++.|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.+..+ |..+..+.+
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN----VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc----cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 45678999998888774444344 8999999999998875 4466789999999999999999966 778999999
Q ss_pred CcEEecccCCCccc-chHHHhcCccccEEeCcCCCC
Q 043825 188 LRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDI 222 (235)
Q Consensus 188 Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l 222 (235)
|++|++++|.++.+ |..+. .+++|++|++++|.+
T Consensus 131 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFD-TLHSLSTLNLLANPF 165 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTT-TCTTCCEEECCSCCE
T ss_pred CCEEECCCCcCCEECHHHhc-CCCCCCEEEecCcCC
Confidence 99999999999988 67788 999999999999954
No 49
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.06 E-value=6.8e-10 Score=92.68 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=84.8
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr 189 (235)
....+++|.+..+....... .. +++|+.|.+.++.... + +.+..+++|+.|++++|.+..+|. +..+.+|+
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-----V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ 132 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-----C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-----c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence 35677888887776653222 22 7888888888777653 2 357788888888888888887765 88888888
Q ss_pred EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
+|++++|.+..+|. ++ .+++|++|++++|.+..+|. +..+++|
T Consensus 133 ~L~l~~n~l~~~~~-l~-~l~~L~~L~l~~n~l~~~~~-l~~l~~L 175 (308)
T 1h6u_A 133 VLYLDLNQITNISP-LA-GLTNLQYLSIGNAQVSDLTP-LANLSKL 175 (308)
T ss_dssp EEECCSSCCCCCGG-GG-GCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred EEECCCCccCcCcc-cc-CCCCccEEEccCCcCCCChh-hcCCCCC
Confidence 88888888888876 77 88888888888888887776 6665543
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.06 E-value=4.1e-10 Score=103.38 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=93.6
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~ 187 (235)
.+.++++|.+..+.........+ +++|++|.+.++.... ..+..+.++++|++|++++|.+..+|. .++.+.+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 45789999998887764343334 8899999998887754 456788899999999999999888876 5889999
Q ss_pred CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCccc-cHhhcccCCC
Q 043825 188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDIDHI-ADEFWKMNKL 235 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~L 235 (235)
|++|++++|.+..+| ..++ ++++|++|++++|.+..+ |..++++++|
T Consensus 99 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred CCEEECCCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccC
Confidence 999999999888887 4677 889999999998866654 4455555543
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.06 E-value=2.5e-10 Score=91.59 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=63.4
Q ss_pred CCCeEEEEEEcCC-CCccccccc--CCCcceEEEec-CCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCccc
Q 043825 112 RKNVKRFCALEQQ-SDFAYLDDY--YPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSL 187 (235)
Q Consensus 112 ~~~~r~lsl~~~~-~~~~~~~~~--~~~LrsL~~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~ 187 (235)
...++++.+..+. ........+ +++|+.|.+.+ +.... ..+..|..+++|+.|++++|.++.+|. ++.+.+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~----i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY----IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYS 128 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCB
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----cCHHHhCCCCCCCEEeCCCCCCccccc-cccccc
Confidence 3455666666553 332122222 55666666655 44432 223345566666666666666666655 555555
Q ss_pred Cc---EEecccC-CCcccchH-HHhcCcccc-EEeCcCCCCccccHhh
Q 043825 188 LR---YLKLNIP-SLKSLPSS-FFNYLSNLY-TLNMPFSDIDHIADEF 229 (235)
Q Consensus 188 Lr---~L~l~~~-~l~~lP~~-i~~~L~~L~-~L~l~~~~l~~lP~~i 229 (235)
|+ +|++++| .+..+|.. +. ++++|+ +|++++|.+..+|...
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~-~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQ-GLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTT-TTBSSEEEEECCSCCCCEECTTT
T ss_pred cccccEEECCCCcchhhcCccccc-chhcceeEEEcCCCCCcccCHhh
Confidence 55 6666666 66666654 45 666777 7777776666666543
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.05 E-value=3.2e-10 Score=102.53 Aligned_cols=98 Identities=19% Similarity=0.102 Sum_probs=84.7
Q ss_pred cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchH-HHhcCc
Q 043825 133 YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSS-FFNYLS 210 (235)
Q Consensus 133 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~ 210 (235)
+.+.++.|.+.++.... ..+..|.++++|++|+|++|.++.+|+ .+.+|.+|++|+|++|+++.+|.. +. +|.
T Consensus 50 lp~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~-~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLS 124 (635)
T ss_dssp SCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT-TCT
T ss_pred CCcCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc-CCC
Confidence 36789999999988864 345679999999999999999998865 689999999999999999999975 57 999
Q ss_pred cccEEeCcCCCCccccH-hhcccCCC
Q 043825 211 NLYTLNMPFSDIDHIAD-EFWKMNKL 235 (235)
Q Consensus 211 ~L~~L~l~~~~l~~lP~-~i~~L~~L 235 (235)
+|++|++++|.+..+|. .+++|++|
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred CCCEEECCCCcCCCCChhhhhcCccc
Confidence 99999999999999886 46777654
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=8.5e-10 Score=86.59 Aligned_cols=97 Identities=25% Similarity=0.271 Sum_probs=82.4
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSLKSLPSS-FFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~ 211 (235)
.++++.|.+.++.... ..+..+..+++|++|++++|.++.+|.. +..+.+|++|++++|.+..+|.. +. ++++
T Consensus 27 ~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKS----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD-KLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred CCCCcEEEcCCCccCc----CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc-CccC
Confidence 7799999999988764 3455678999999999999999988765 68999999999999999999876 47 9999
Q ss_pred ccEEeCcCCCCccccHh-hcccCCC
Q 043825 212 LYTLNMPFSDIDHIADE-FWKMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~~-i~~L~~L 235 (235)
|++|++++|.+..+|.. +.++++|
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCEEEcCCCcCcccCHhHhccCCcC
Confidence 99999999999888765 4556554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.05 E-value=1.6e-10 Score=98.03 Aligned_cols=109 Identities=22% Similarity=0.210 Sum_probs=62.0
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 188 (235)
...+++|.+..+.........+ +++|++|.+.++.... ..+..|.++++|++|++++|.++.+|.. ++.+.+|
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 3456666666655543222223 6666666666655442 2234456666666666666666655544 5666666
Q ss_pred cEEecccCCCcccch--HHHhcCccccEEeCcCC-CCccc
Q 043825 189 RYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFS-DIDHI 225 (235)
Q Consensus 189 r~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~-~l~~l 225 (235)
++|++++|.+..+|. .+. ++++|++|++++| .+..+
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~-~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEE
T ss_pred CEEECCCCCCcccCchhhhc-cCCCCcEEECCCCcccccc
Confidence 666666666666655 445 5666666666665 45544
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.05 E-value=3.1e-10 Score=92.94 Aligned_cols=117 Identities=18% Similarity=0.097 Sum_probs=55.0
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCc
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLR 189 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr 189 (235)
..+++|.+..+.........+ +++|+.|.+.++.... ..+..+..+++|+.|++++|.+..++ ..+..+.+|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc----cCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 345555554444432221122 4555555555544432 12234455555555555555554333 3455555555
Q ss_pred EEecccCCCcccch-HHHhcCccccEEeCcCCCCcc--ccHhhcccCC
Q 043825 190 YLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDH--IADEFWKMNK 234 (235)
Q Consensus 190 ~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~--lP~~i~~L~~ 234 (235)
+|++++|.+..++. .++ ++++|++|++++|.+.. +|..++.+++
T Consensus 104 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 104 KLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp EEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred EEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCC
Confidence 55555555554443 344 55555555555554443 4444444443
No 56
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=5.3e-10 Score=95.38 Aligned_cols=114 Identities=18% Similarity=0.080 Sum_probs=93.6
Q ss_pred CCCCeEEEEEEcCCCCcccccc---cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDD---YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~---~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~ 186 (235)
.+..++.|.+..+......... .+++|+.|.+.++.... ..+..|..+++|+.|+|++|.++.+|. .+..+.
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc----cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 4566888999888776332222 27899999999888764 344678999999999999999997765 588999
Q ss_pred cCcEEecccCCCccc-chHHHhcCccccEEeCcCCCCccccHhh
Q 043825 187 LLRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHIADEF 229 (235)
Q Consensus 187 ~Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~lP~~i 229 (235)
+|++|+|++|.+..+ |..+. ++++|++|+|++|.+..+|..+
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGG
T ss_pred CCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHH
Confidence 999999999999987 45677 9999999999999999999765
No 57
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.04 E-value=9.5e-10 Score=89.83 Aligned_cols=111 Identities=20% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY 190 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~ 190 (235)
...++.|.+..+....... -. +++|+.|.+.++.....+ . +.. +.|+.|++++|.++.+| .++.+.+|++
T Consensus 62 l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~-----~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLN-----G-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEI 132 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCT-----T-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCE
T ss_pred CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcC-----c-ccc-CcccEEEccCCccCCCh-hhcCcccccE
Confidence 3456666666655542211 11 666666666666554321 1 112 66667777777666654 4667777777
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
|++++|.++.+| .++ .+++|++|++++|.+..+ ..+..+++
T Consensus 133 L~Ls~N~i~~~~-~l~-~l~~L~~L~L~~N~i~~~-~~l~~l~~ 173 (263)
T 1xeu_A 133 LSIRNNKLKSIV-MLG-FLSKLEVLDLHGNEITNT-GGLTRLKK 173 (263)
T ss_dssp EECTTSCCCBCG-GGG-GCTTCCEEECTTSCCCBC-TTSTTCCC
T ss_pred EECCCCcCCCCh-HHc-cCCCCCEEECCCCcCcch-HHhccCCC
Confidence 777777777775 566 777777777777766665 34444444
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.04 E-value=4e-10 Score=98.44 Aligned_cols=110 Identities=21% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCc
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLR 189 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr 189 (235)
..++.+.+..+......+..+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.+..+ |..++.+.+|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccc----cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 345566655554443222222 5666666666555542 2334555666666666666665543 44556666666
Q ss_pred EEecccCCCccc-chHHHhcCccccEEeCcCCCCccccH
Q 043825 190 YLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHIAD 227 (235)
Q Consensus 190 ~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~lP~ 227 (235)
+|++++|.+..+ |..+. .+++|++|++++|.+..+|.
T Consensus 351 ~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCT
T ss_pred EEECCCCcccccChhhcc-ccccccEEECCCCccccCCH
Confidence 666666665554 44555 66666666666665555554
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.04 E-value=5.8e-10 Score=95.79 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=59.7
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
+++|+.|.+.++.... ..+..+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+|..++ .+++|+
T Consensus 247 l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~ 321 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLE 321 (390)
T ss_dssp CTTCSEEECCSSCCCE----EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH-HHTTCS
T ss_pred CCCccEEECCCCcCCC----cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcccc-ccCcCC
Confidence 5666666666665543 33456666777777777777777666666667777777777777777777776 777777
Q ss_pred EEeCcCCCCcccc
Q 043825 214 TLNMPFSDIDHIA 226 (235)
Q Consensus 214 ~L~l~~~~l~~lP 226 (235)
+|++++|.+..+|
T Consensus 322 ~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 322 NLYLDHNSIVTLK 334 (390)
T ss_dssp EEECCSSCCCCCC
T ss_pred EEECCCCccceeC
Confidence 7777777666654
No 60
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.04 E-value=5.7e-10 Score=86.81 Aligned_cols=97 Identities=24% Similarity=0.246 Sum_probs=81.6
Q ss_pred CCCcceEEEecCCCCCCCCcchh-HHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchH-HHhcCc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQ-KICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLS 210 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~ 210 (235)
..+++.|.+.++..... .+ ..+..+++|+.|++++|.++.+ |..+..+.+|++|++++|.++.+|.. +. .++
T Consensus 28 ~~~l~~L~l~~n~i~~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~ 102 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRI----SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLH 102 (192)
T ss_dssp CTTCSEEECCSCCCCSB----CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST-TCT
T ss_pred CCCCCEEECCCCcCCcc----CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc-CCC
Confidence 66999999999887642 22 2489999999999999999966 78899999999999999999988765 67 999
Q ss_pred cccEEeCcCCCCccc-cHhhcccCCC
Q 043825 211 NLYTLNMPFSDIDHI-ADEFWKMNKL 235 (235)
Q Consensus 211 ~L~~L~l~~~~l~~l-P~~i~~L~~L 235 (235)
+|++|++++|.+..+ |..+..+++|
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 999999999988866 6667766654
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.03 E-value=1.2e-09 Score=90.60 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
....+++|.+..+.... .+.+ +++|+.|.+.++.... + ..+..+++|+.|++++|.+..+ +.++.+.+|
T Consensus 88 ~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~-----~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 158 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKL 158 (291)
T ss_dssp TCTTCCEEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred cCCCCCEEECCCCcCCC--ChhhccCCCCCEEECCCCcCCC-----C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCC
Confidence 34456666666655442 2223 6667777766665542 2 3456677777777777777665 456777777
Q ss_pred cEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
++|++++|.+..++. +. .+++|+.|++++|.+..+|. +..+++|
T Consensus 159 ~~L~L~~N~l~~~~~-l~-~l~~L~~L~L~~N~i~~l~~-l~~l~~L 202 (291)
T 1h6t_A 159 DTLSLEDNQISDIVP-LA-GLTKLQNLYLSKNHISDLRA-LAGLKNL 202 (291)
T ss_dssp SEEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred CEEEccCCccccchh-hc-CCCccCEEECCCCcCCCChh-hccCCCC
Confidence 777777777777765 66 77777777777777777764 5555543
No 62
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.03 E-value=4.5e-10 Score=99.95 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=86.9
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
.+..+++|.+..+......+..+ +++|++|.+.++.... ..+..|.++++|++|++++|.++.+|.. .+.+|
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 34688899988887764333334 8899999998888764 4467889999999999999999888887 88999
Q ss_pred cEEecccCCCcc--cchHHHhcCccccEEeCcCCCCcc
Q 043825 189 RYLKLNIPSLKS--LPSSFFNYLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 189 r~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~ 224 (235)
++|++++|.+.. +|..++ ++++|++|++++|.+..
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG
T ss_pred cEEeccCCccccccchhhhc-cCCcceEEEecCcccch
Confidence 999999998875 578888 99999999999987654
No 63
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=3.3e-10 Score=86.91 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=72.9
Q ss_pred ceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHH-HhcCccccEE
Q 043825 138 HSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSF-FNYLSNLYTL 215 (235)
Q Consensus 138 rsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~L~~L 215 (235)
+.+.+.++.... +|..+ .+.|++|++++|.+..+ |..++.+.+|++|+|++|.+..+|..+ . ++++|++|
T Consensus 15 ~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD-KLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEE
T ss_pred cEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC-CcchhhEE
Confidence 455666655543 33322 27899999999999977 668999999999999999999999875 6 89999999
Q ss_pred eCcCCCCccccHh-hcccCCC
Q 043825 216 NMPFSDIDHIADE-FWKMNKL 235 (235)
Q Consensus 216 ~l~~~~l~~lP~~-i~~L~~L 235 (235)
+|++|.+..+|.. +..+++|
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTC
T ss_pred ECCCCccceeCHHHhccccCC
Confidence 9999999999875 7777654
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.03 E-value=7.3e-10 Score=98.55 Aligned_cols=111 Identities=20% Similarity=0.150 Sum_probs=90.9
Q ss_pred EEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEeccc
Q 043825 117 RFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNI 195 (235)
Q Consensus 117 ~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~ 195 (235)
++.+..+.... .+....++++.|.+.++.... ..+..|..+++|++|++++|.+..+ |..++.+.+|++|++++
T Consensus 4 ~l~ls~n~l~~-ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 4 LVDRSKNGLIH-VPKDLSQKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp EEECTTSCCSS-CCCSCCTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred eEecCCCCccc-ccccccccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 44444444441 222236899999999998865 4567899999999999999999866 78999999999999999
Q ss_pred CCCcccchHHHhcCccccEEeCcCCCCcc--ccHhhcccCCC
Q 043825 196 PSLKSLPSSFFNYLSNLYTLNMPFSDIDH--IADEFWKMNKL 235 (235)
Q Consensus 196 ~~l~~lP~~i~~~L~~L~~L~l~~~~l~~--lP~~i~~L~~L 235 (235)
|.++.+|.. .+++|++|++++|.+.. +|..++++++|
T Consensus 79 N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 79 NKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp SCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred CceeecCcc---ccCCccEEeccCCccccccchhhhccCCcc
Confidence 999999987 69999999999998775 67889888775
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.03 E-value=3.5e-10 Score=101.45 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~ 187 (235)
....+++|.+..+.........+ +++|++|.+.++.... ..+..|..+++|++|++++|.+..+|. .++.+.+
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc----cCHhhhcCccccccccccccccccCCCcccccccc
Confidence 45678999998887664333334 8999999999887754 345678999999999999999988776 6899999
Q ss_pred CcEEecccCCCcc--cchHHHhcCccccEEeCcCCCCcccc-HhhcccCC
Q 043825 188 LRYLKLNIPSLKS--LPSSFFNYLSNLYTLNMPFSDIDHIA-DEFWKMNK 234 (235)
Q Consensus 188 Lr~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP-~~i~~L~~ 234 (235)
|++|++++|.+.. +|..++ ++++|++|++++|.+..+| ..++.+++
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred ccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhc
Confidence 9999999999875 789999 9999999999999887764 44554443
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.03 E-value=2.1e-10 Score=102.54 Aligned_cols=117 Identities=22% Similarity=0.190 Sum_probs=70.1
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 188 (235)
...++++.+..+......+..+ +++|+.|.+.++.... ..+..|..+++|++|++++|.+..+|.. ++.+.+|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 3566777776666553333333 6677777776665543 2345566667777777777766655443 6667777
Q ss_pred cEEecccCCCcc--cchHHHhcCccccEEeCcCCC-CccccH-hhcccC
Q 043825 189 RYLKLNIPSLKS--LPSSFFNYLSNLYTLNMPFSD-IDHIAD-EFWKMN 233 (235)
Q Consensus 189 r~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~-l~~lP~-~i~~L~ 233 (235)
++|++++|.+.. .|..++ ++++|++|++++|. +..+|. .+++++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred cEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhccc
Confidence 777777766653 345566 66666666666663 555552 444443
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.03 E-value=2.7e-10 Score=103.12 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=95.3
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~ 187 (235)
....+++|.+..+......+..+ +++|++|.+.++.... ..+..|.++++|++|++++|.+..+| ..++++.+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc----cChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 55789999998887764444444 8999999999888764 34678899999999999999998766 67999999
Q ss_pred CcEEecccCCCc--ccchHHHhcCccccEEeCcCCCCccccH-hhcc
Q 043825 188 LRYLKLNIPSLK--SLPSSFFNYLSNLYTLNMPFSDIDHIAD-EFWK 231 (235)
Q Consensus 188 Lr~L~l~~~~l~--~lP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~ 231 (235)
|++|++++|.+. .+|..++ ++++|++|++++|.+..+|. .++.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHH
T ss_pred CCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhh
Confidence 999999999987 5899999 99999999999998877643 3443
No 68
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=4.4e-10 Score=106.15 Aligned_cols=119 Identities=15% Similarity=0.209 Sum_probs=92.7
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCC-CCCCCCcchhHHhhccC-------ccCeEEEeCCcccccch
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSE-SDHLDPIDWQKICEMYK-------LLRALDLGYLVLNQYLS 180 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~-~~~~~~~~~~~~~~~l~-------~Lr~L~l~~~~l~~lp~ 180 (235)
....+++|.+..+......+..+ +++|+.|.+.++. .... .+|..+.++. +|+.|++++|.+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~---~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA---QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH---HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc---cchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 35678999999887654455555 8899999998886 4310 1455566555 88999999988888888
Q ss_pred --hcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 181 --EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 181 --~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
.++++.+|++|++++|.+..+| .++ ++++|+.|++++|.+..+|..++++++
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~~-~L~~L~~L~Ls~N~l~~lp~~l~~l~~ 619 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE-AFG-TNVKLTDLKLDYNQIEEIPEDFCAFTD 619 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC-CCC-TTSEESEEECCSSCCSCCCTTSCEECT
T ss_pred hhhhhcCCCCCEEECCCCCcccch-hhc-CCCcceEEECcCCccccchHHHhhccc
Confidence 8888888999999888888888 778 888888888888877788887777665
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.02 E-value=1.5e-09 Score=90.59 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=42.5
Q ss_pred hhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 159 CEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 159 ~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
+..+++|+.|++++|.+..++. +..+.+|++|++++|.+..+|. +. .+++|++|++++|.+..+|. +..+++
T Consensus 147 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~-~l~~L~~L~L~~N~l~~~~~-l~~l~~ 218 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LA-SLPNLIEVHLKNNQISDVSP-LANTSN 218 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GG-GCTTCCEEECTTSCCCBCGG-GTTCTT
T ss_pred ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hc-CCCCCCEEEccCCccCcccc-ccCCCC
Confidence 5555666666666666555544 5566666666666666665554 55 66666666666666665553 444443
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.02 E-value=4.4e-10 Score=98.23 Aligned_cols=121 Identities=18% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 187 (235)
.+..+++|.+..+......+..+ +++|+.|.+.++..... ..+..|..+++|++|++++|.+..+ |..++.+.+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 45678888888777664333444 77888888877655320 2245677778888888888877644 667777778
Q ss_pred CcEEecccCCCcc-cchH--HHhcCccccEEeCcCCCCccc-cHh-hcccCCC
Q 043825 188 LRYLKLNIPSLKS-LPSS--FFNYLSNLYTLNMPFSDIDHI-ADE-FWKMNKL 235 (235)
Q Consensus 188 Lr~L~l~~~~l~~-lP~~--i~~~L~~L~~L~l~~~~l~~l-P~~-i~~L~~L 235 (235)
|++|++++|.+.. +|.. ++ ++++|++|++++|.+..+ |.. ++++++|
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFK-PLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTT-TCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred CCEEeCCCCCCCccccCccccc-CcccCCEEECCCCccCccCcccccCCCCcc
Confidence 8888888777764 3443 66 777777777777766655 433 5555543
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.01 E-value=1.6e-09 Score=89.81 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=87.0
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr 189 (235)
....+++|.+..+....... .. +++|+.|.+.++.... + +.+..+++|+.|++++|.+..+ +.+..+.+|+
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~ 137 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-----L-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLE 137 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----G-GGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCC
T ss_pred cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-----C-hhhccCCCCCEEECCCCcCCCC-hhhcCCCCCC
Confidence 34678888888777653222 22 8888888888877653 2 3478888899999999988876 4578888999
Q ss_pred EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
+|++++|.+..+ ..++ ++++|++|++++|.+..+|. +..+++|
T Consensus 138 ~L~l~~n~l~~~-~~l~-~l~~L~~L~L~~N~l~~~~~-l~~l~~L 180 (291)
T 1h6t_A 138 SLYLGNNKITDI-TVLS-RLTKLDTLSLEDNQISDIVP-LAGLTKL 180 (291)
T ss_dssp EEECCSSCCCCC-GGGG-GCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred EEEccCCcCCcc-hhhc-cCCCCCEEEccCCccccchh-hcCCCcc
Confidence 999999988888 5677 89999999999998888776 6666654
No 72
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.01 E-value=7.9e-10 Score=103.24 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=47.4
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccCcEEecccCCCc-ccchHHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLLRYLKLNIPSLK-SLPSSFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~Lr~L~l~~~~l~-~lP~~i~~~L~~ 211 (235)
+++|+.|.+.++.... ..+..+..++.|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|.+++ ++++
T Consensus 441 l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~ 515 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLEN 515 (768)
T ss_dssp CTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTT
T ss_pred CCCCCEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCC
Confidence 4444444444444332 23344455555555555555544 44555555555555555555544 4455555 5555
Q ss_pred ccEEeCcCCCCc-cccHhhcccCC
Q 043825 212 LYTLNMPFSDID-HIADEFWKMNK 234 (235)
Q Consensus 212 L~~L~l~~~~l~-~lP~~i~~L~~ 234 (235)
|++|++++|.+. .+|..++.+++
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTT
T ss_pred CCEEECCCCcccCcCCHHHcCCCC
Confidence 555555555333 44555544443
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.01 E-value=7e-10 Score=97.27 Aligned_cols=112 Identities=22% Similarity=0.191 Sum_probs=75.4
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 187 (235)
.+..+++|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|+.|+|++|.+..+|.. +..+.+
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ----IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC----cChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 45678888887777664333444 7888888887776653 3345677788888888888887766554 677778
Q ss_pred CcEEecccCCCcccch-HHHhcCccccEEeCcCC-CCccccH
Q 043825 188 LRYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFS-DIDHIAD 227 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~-~l~~lP~ 227 (235)
|++|++++|.+..+|. .+. ++++|++|++++| .+..+|.
T Consensus 149 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp CCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECT
T ss_pred CCEEECCCCCcceeCHhHHh-cCCcccEEeCCCCCCccccCh
Confidence 8888888877777765 334 5666666666654 4555543
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.01 E-value=9.4e-10 Score=96.14 Aligned_cols=112 Identities=20% Similarity=0.154 Sum_probs=73.3
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~ 187 (235)
.+..++.|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|+.|+|++|.++.+|. .+..+.+
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc----cChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 45667778877777664333334 7788888887776653 334567777788888888877776655 5777777
Q ss_pred CcEEecccCCCcccch-HHHhcCccccEEeCcCC-CCccccH
Q 043825 188 LRYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFS-DIDHIAD 227 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~-~l~~lP~ 227 (235)
|++|++++|.+..+|. .+. ++++|++|++++| .+..+|.
T Consensus 138 L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECT
T ss_pred CceeeCCCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCc
Confidence 7777777777776665 334 5555666655554 4444443
No 75
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.01 E-value=7.7e-10 Score=104.33 Aligned_cols=121 Identities=19% Similarity=0.133 Sum_probs=87.2
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 187 (235)
.+..+++|.+..+.........+ +++|+.|.+.++..... ..+..|.++++|++|+|++|.+..+ |..++.+.+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~---i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT---IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE---ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc---cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 56788889888887764444444 88888888887744320 2256778888888888888887754 778888888
Q ss_pred CcEEecccCCCcc-cchH--HHhcCccccEEeCcCCCCccc--cHhhcccCCC
Q 043825 188 LRYLKLNIPSLKS-LPSS--FFNYLSNLYTLNMPFSDIDHI--ADEFWKMNKL 235 (235)
Q Consensus 188 Lr~L~l~~~~l~~-lP~~--i~~~L~~L~~L~l~~~~l~~l--P~~i~~L~~L 235 (235)
|++|+|++|.+.. +|.. ++ ++++|++|++++|.+..+ |..++++++|
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFR-NLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCS-SCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred cCEeeCcCCCCCcccccCcccc-ccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 8888888887764 4554 67 888888888888866654 2456666654
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.01 E-value=3.3e-10 Score=103.74 Aligned_cols=119 Identities=14% Similarity=0.201 Sum_probs=90.0
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCC-CCCCCCcchhHHhhcc------CccCeEEEeCCcccccch-
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSE-SDHLDPIDWQKICEMY------KLLRALDLGYLVLNQYLS- 180 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~-~~~~~~~~~~~~~~~l------~~Lr~L~l~~~~l~~lp~- 180 (235)
....+++|.+..+......+..+ +++|+.|.+.++. .... .+|..+.++ ++|++|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~---~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE---QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH---HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc---cchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 35678899998887654455555 8899999988876 4310 255666665 888888888888888888
Q ss_pred -hcCCcccCcEEecccCCCc-ccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 181 -EIENLSLLRYLKLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 181 -~i~~L~~Lr~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
.++.+.+|++|++++|.+. .+| .++ ++++|++|++++|.+..+|..++++++
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~~lp~~l~~l~~ 377 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQITEIPANFCGFTE 377 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSEEEECCTTSEEECT
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCccccccHhhhhhcc
Confidence 8888888888888888887 888 777 788888888888877778777776655
No 77
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.3e-09 Score=84.95 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=83.2
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccch-HHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPS-SFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~~L~~ 211 (235)
.++++.|.+.++... .++..|..+++|+.|++++|.++.++ ..+..+.+|++|+|++|.+..+|. .+. .+++
T Consensus 30 ~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~ 103 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD-GLKS 103 (193)
T ss_dssp CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTT
T ss_pred CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC-CCCC
Confidence 779999999998876 35578999999999999999999775 568999999999999999998886 577 9999
Q ss_pred ccEEeCcCCCCccccHh-hcccCCC
Q 043825 212 LYTLNMPFSDIDHIADE-FWKMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~~-i~~L~~L 235 (235)
|++|+|++|.+..+|.. +..+++|
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCEEECCCCCCCeeChhhhhcCccc
Confidence 99999999999999874 5556543
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=4.7e-10 Score=101.85 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=42.6
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHH-HhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSF-FNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~ 211 (235)
+++|++|.+.++.... ..+..|..+++|+.|+|++|.+..+|. .++.+.+|++|++++|.+..+|..+ + ++++
T Consensus 74 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~ 148 (597)
T 3oja_B 74 FRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH-NTPK 148 (597)
T ss_dssp CCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred CCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc-cCCC
Confidence 4555555555544432 222344555555555555555544332 3355555555555555555555443 4 5555
Q ss_pred ccEEeCcCCCCccc
Q 043825 212 LYTLNMPFSDIDHI 225 (235)
Q Consensus 212 L~~L~l~~~~l~~l 225 (235)
|++|++++|.+..+
T Consensus 149 L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 149 LTTLSMSNNNLERI 162 (597)
T ss_dssp CCEEECCSSCCCBC
T ss_pred CCEEEeeCCcCCCC
Confidence 55555555544443
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=9.3e-10 Score=99.90 Aligned_cols=106 Identities=13% Similarity=0.007 Sum_probs=72.0
Q ss_pred CeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEE
Q 043825 114 NVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYL 191 (235)
Q Consensus 114 ~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L 191 (235)
.++.|.+..+.... .+.+ +++|+.|.+.++.... ..+..|..+++|+.|+|++|.+..+|..++.+++|++|
T Consensus 233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306 (597)
T ss_dssp CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEE
T ss_pred CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC----CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEE
Confidence 45555555554432 2222 6777777777666543 34566777777777777777777777777777777777
Q ss_pred ecccCCCcccchHHHhcCccccEEeCcCCCCcccc
Q 043825 192 KLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 192 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
++++|.+..+|..++ .+++|++|++++|.+..+|
T Consensus 307 ~Ls~N~l~~i~~~~~-~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 307 DLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp ECCSSCCCCCGGGHH-HHTTCSEEECCSSCCCCCC
T ss_pred ECCCCCCCccCcccc-cCCCCCEEECCCCCCCCcC
Confidence 777777777777777 7777777777777666665
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=6.8e-10 Score=104.87 Aligned_cols=119 Identities=12% Similarity=0.173 Sum_probs=99.9
Q ss_pred CCCCeEEEEEEcCCCCcc-----------------ccccc----CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEE
Q 043825 111 SRKNVKRFCALEQQSDFA-----------------YLDDY----YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALD 169 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~-----------------~~~~~----~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~ 169 (235)
...+++.|.+..+..... .+..+ +++|+.|.+.++.... .+|..+.++++|+.|+
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLN 521 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEE
Confidence 456789999998887641 23321 7899999999987654 5678899999999999
Q ss_pred EeCCc-cc--ccchhcCCcc-------cCcEEecccCCCcccch--HHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 170 LGYLV-LN--QYLSEIENLS-------LLRYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 170 l~~~~-l~--~lp~~i~~L~-------~Lr~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
+++|. ++ .+|..++.+. +|++|++++|.+..+|. .++ ++++|++|++++|.+..+| .++++++|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~-~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ-KMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT-TCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh-cCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 99998 87 4898888777 99999999999999999 999 9999999999999888999 77776653
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.98 E-value=8.9e-10 Score=88.36 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=70.8
Q ss_pred CCCeEEEEEEc-CCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccC---eEEEeCC-cccccch-hcC
Q 043825 112 RKNVKRFCALE-QQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLR---ALDLGYL-VLNQYLS-EIE 183 (235)
Q Consensus 112 ~~~~r~lsl~~-~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr---~L~l~~~-~l~~lp~-~i~ 183 (235)
...+++|.+.. +.........+ +++|+.|.+.++.... ++. +..++.|+ .|++++| .++.+|. .+.
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCccccc
Confidence 45677777775 55543222233 6777777777766653 222 55666666 7777777 6776654 366
Q ss_pred CcccCc-EEecccCCCcccchHHHhcCccccEEeCcCC-CCccccH
Q 043825 184 NLSLLR-YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS-DIDHIAD 227 (235)
Q Consensus 184 ~L~~Lr-~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~-~l~~lP~ 227 (235)
.+.+|+ +|++++|.+..+|.... ...+|+.|++++| .++.+|.
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~~~-~~~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTTTT-TTCEEEEEECTTCTTCCEECT
T ss_pred chhcceeEEEcCCCCCcccCHhhc-CCCCCCEEEcCCCCCcccCCH
Confidence 777777 77777777777777666 5577777777777 4777754
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.97 E-value=1.4e-09 Score=97.88 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=78.5
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
.+..+++|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|++|++++|.++.+|.. .+.+|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 34677888887777664333344 7788888888777653 3356677888888888888888877776 78888
Q ss_pred cEEecccCCCcccc--hHHHhcCccccEEeCcCCCCcc
Q 043825 189 RYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 189 r~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~ 224 (235)
++|++++|.+..+| ..++ ++++|++|++++|.+..
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCT
T ss_pred CEEECCCCCccccCchHhhc-ccCcccEEecCCCcccc
Confidence 88888888877654 6777 88888888888886654
No 83
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.97 E-value=7.7e-10 Score=100.15 Aligned_cols=110 Identities=12% Similarity=-0.040 Sum_probs=72.0
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 187 (235)
.+..+++|.+..+......+..+ +++|++|.+.++.... ..+..|.++++|++|++++|.+..+ |..++.+.+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 45567777777776654333334 7777777777766543 3355667777777777777776643 556777777
Q ss_pred CcEEecccCCCccc-chHHHhcCccccEEeCcCCCCccc
Q 043825 188 LRYLKLNIPSLKSL-PSSFFNYLSNLYTLNMPFSDIDHI 225 (235)
Q Consensus 188 Lr~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~l 225 (235)
|++|++++|.+..+ |..++ ++++|++|++++|.+..+
T Consensus 107 L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSI 144 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCC
T ss_pred ccEeeccccCcccCCcchhc-cCCcccEEECCCCccccc
Confidence 77777777776665 44555 666777777776655544
No 84
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.97 E-value=5.7e-10 Score=102.12 Aligned_cols=118 Identities=11% Similarity=0.180 Sum_probs=97.2
Q ss_pred CCCCeEEEEEEcCCCCcc-----------------ccccc----CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEE
Q 043825 111 SRKNVKRFCALEQQSDFA-----------------YLDDY----YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALD 169 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~-----------------~~~~~----~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~ 169 (235)
..+.++.|.+..+..... .+..+ +++|+.|.+.++.... .+|..+.++++|++|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLIN 279 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEE
Confidence 456788999988876642 22221 6889999999887654 5678889999999999
Q ss_pred EeCCc-cc--ccchhcCCc------ccCcEEecccCCCcccch--HHHhcCccccEEeCcCCCCc-cccHhhcccCC
Q 043825 170 LGYLV-LN--QYLSEIENL------SLLRYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDID-HIADEFWKMNK 234 (235)
Q Consensus 170 l~~~~-l~--~lp~~i~~L------~~Lr~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~ 234 (235)
+++|. ++ .+|..++.+ .+|++|++++|.+..+|. .++ ++++|++|++++|.+. .+| .++.+++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99998 87 489988887 899999999999999999 899 9999999999999887 898 7766554
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.96 E-value=1.2e-09 Score=98.20 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecc
Q 043825 116 KRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLN 194 (235)
Q Consensus 116 r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~ 194 (235)
+++.+..+.... .+....++++.|.+.++.... ..+..|..+++|++|++++|.++.+ |..++.+.+|++|+++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTSCCCS-CCTTSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcCCCCCcc-CCCCCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 566666665542 222237899999999988865 3457889999999999999999866 6789999999999999
Q ss_pred cCCCcccchHHHhcCccccEEeCcCCCCcccc--HhhcccCCC
Q 043825 195 IPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA--DEFWKMNKL 235 (235)
Q Consensus 195 ~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP--~~i~~L~~L 235 (235)
+|.++.+|.. .+++|++|++++|.+..+| ..++++++|
T Consensus 109 ~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 109 HNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred CCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 9999999987 6999999999999887764 788888765
No 86
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.96 E-value=5e-10 Score=92.97 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=71.1
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L 188 (235)
..+++.+.+..+.........+ +++|+.|.+.++..... ..+..+..+++|+.|++++|.+..+ |..+..+.+|
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 3456666665554432222222 56666666665544210 1345566777777777777777654 5667777777
Q ss_pred cEEecccCCCcccch-HHHhcCccccEEeCcCCCCcc-ccHhhccc
Q 043825 189 RYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDH-IADEFWKM 232 (235)
Q Consensus 189 r~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~-lP~~i~~L 232 (235)
++|++++|.+..+|. .+. .+++|++|++++|.+.. .|..+..+
T Consensus 202 ~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp CEEECTTSCCSBCCSGGGT-TCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred CEEECCCCccCccChhhcc-CcccCCEeECCCCCCcccCHHHHHhh
Confidence 777777777776655 455 77777777777775554 34444443
No 87
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=8.7e-10 Score=84.15 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=72.5
Q ss_pred ceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchHH-HhcCccccEE
Q 043825 138 HSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSSF-FNYLSNLYTL 215 (235)
Q Consensus 138 rsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~i-~~~L~~L~~L 215 (235)
+++.+.++.... +|..+ .+.|+.|++++|.++.+ |..+..+.+|++|+|++|.++.+|... . ++++|++|
T Consensus 12 ~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L 83 (170)
T 3g39_A 12 TTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD-KLTQLTQL 83 (170)
T ss_dssp TEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEE
T ss_pred CEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc-CCCCCCEE
Confidence 456666655543 23222 37899999999999977 667999999999999999999999875 6 89999999
Q ss_pred eCcCCCCccccHh-hcccCCC
Q 043825 216 NMPFSDIDHIADE-FWKMNKL 235 (235)
Q Consensus 216 ~l~~~~l~~lP~~-i~~L~~L 235 (235)
+|++|.+..+|.. +..+++|
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSL 104 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTC
T ss_pred ECCCCccCEeCHHHhcCCCCC
Confidence 9999999999874 6666654
No 88
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.95 E-value=1.2e-09 Score=96.11 Aligned_cols=108 Identities=19% Similarity=0.104 Sum_probs=54.5
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchh-cCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSE-IENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 187 (235)
.+..+++|.+..+.........+ +++|+.|.+.++.... ..+..|.++++|+.|+|++|.+..+|.. +..+.+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 34456666666555543222223 5566666665554432 2234455555566666665555555432 455555
Q ss_pred CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCc
Q 043825 188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~ 223 (235)
|++|++++|.+..++ ..+. ++++|++|++++|.+.
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLV 141 (477)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCC
T ss_pred CCEEECCCCccccCChhHcc-ccccCCEEECCCCccc
Confidence 555555555554332 2334 4555555555544443
No 89
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.95 E-value=2.3e-09 Score=100.16 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=99.6
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-ccchhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-QYLSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L 188 (235)
..+++.+.+..+......+..+ +++|+.|.+.++.... ..+..+.++++|++|++++|.+. .+|.+++.+++|
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC----cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 4567778777776654444444 8999999999988865 46778999999999999999988 889999999999
Q ss_pred cEEecccCCCc-ccchHHHhcCccccEEeCcCCCC-ccccHhhcccC
Q 043825 189 RYLKLNIPSLK-SLPSSFFNYLSNLYTLNMPFSDI-DHIADEFWKMN 233 (235)
Q Consensus 189 r~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~ 233 (235)
++|++++|.+. .+|..++ ++++|++|++++|.+ ..+|..++++.
T Consensus 517 ~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhccc
Confidence 99999999987 8999999 999999999999955 48998887654
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.94 E-value=3.9e-09 Score=88.97 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=60.2
Q ss_pred CCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY 190 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~ 190 (235)
...++++.+..+....... .. +++|++|.+.++.... + +.+..+++|++|++++|.+..+|. +..+.+|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-----~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-----I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-----c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 3455666655554432111 11 5666666665554432 1 235566666666666666655554 556666666
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
|++++|.....+..+. .+++|++|++++|.+..+|. +..+++
T Consensus 137 L~l~~n~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~l~~ 178 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLS-NMTGLNYLTVTESKVKDVTP-IANLTD 178 (347)
T ss_dssp EECTTCTTCCCCGGGT-TCTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred EECCCCCCcccccchh-hCCCCcEEEecCCCcCCchh-hccCCC
Confidence 6666664332333355 66666666666665555543 444443
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.94 E-value=3.1e-09 Score=96.76 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=66.2
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr 189 (235)
...+++|.+..+.... ++.+ +++|+.|.+.++.... + +.+..+++|+.|+|++|.+..+ ..++.+.+|+
T Consensus 86 l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~ 156 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLD 156 (605)
T ss_dssp CTTCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCS
T ss_pred CCCCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCC-----C-ccccCCCccCEEECCCCccCCc-hhhcccCCCC
Confidence 3455666665555442 2223 6666666666655542 1 2356666677777777666655 4566666777
Q ss_pred EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
.|+|++|.+..+++ +. .+++|+.|+|++|.+..+| .+..|++
T Consensus 157 ~L~Ls~N~l~~~~~-l~-~l~~L~~L~Ls~N~i~~l~-~l~~l~~ 198 (605)
T 1m9s_A 157 TLSLEDNQISDIVP-LA-GLTKLQNLYLSKNHISDLR-ALAGLKN 198 (605)
T ss_dssp EEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCBCG-GGTTCTT
T ss_pred EEECcCCcCCCchh-hc-cCCCCCEEECcCCCCCCCh-HHccCCC
Confidence 77777766666655 66 6677777777776666664 3555444
No 92
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.94 E-value=1e-09 Score=91.15 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=69.8
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
.+..+++|.+..+.........+ +++|+.|.+.++...... ..+..+..+++|++|++++|.+..+|..+..+.+|
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE--EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc--CcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 44577888887776653222223 778888888776654211 12355566777777777777777677667677777
Q ss_pred cEEecccCCCcccch--HHHhcCccccEEeCcCCCCc
Q 043825 189 RYLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 189 r~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~ 223 (235)
++|++++|.+..+|. .+. ++++|++|++++|.+.
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTR 139 (306)
T ss_dssp CEEECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCE
T ss_pred CEEECCCCcccccccchhhh-hccCCCEEECCCCcCC
Confidence 777777766666653 455 6666666666666544
No 93
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.94 E-value=5.8e-09 Score=87.49 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=79.1
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
.+..++.+.+..+.........+ +++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|..+. .+|
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 34577888887777664333334 7888888888877654 346677888888888888888887777655 567
Q ss_pred cEEecccCCCcccchH-HHhcCccccEEeCcCCCCc---cccHhhcccCC
Q 043825 189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDID---HIADEFWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~---~lP~~i~~L~~ 234 (235)
++|++++|.+..+|.. +. ++++|++|++++|.+. ..|..+.++++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp CEEECCSSCCCBBCHHHHT-TCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred cEEECCCCcccccCHhHhc-CCccccEEECCCCcCCccCcChhhccCCCC
Confidence 7777777777766654 45 6777777777776543 23444444443
No 94
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.93 E-value=1.9e-09 Score=90.55 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=72.0
Q ss_pred CCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcE
Q 043825 113 KNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRY 190 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~ 190 (235)
..++.+.+..+... ..+.. .++|+.|.+.++.... ..+..+..+++|+.|++++|.+..++ ..+..+.+|++
T Consensus 171 ~~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 171 KKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp TTCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred CCcCEEECCCCccc--cCCccccccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 34455555444433 11111 4556666665555432 23456777888888888888877554 46777888888
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccccH
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIAD 227 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~ 227 (235)
|++++|.+..+|..+. .+++|++|++++|.+..+|.
T Consensus 245 L~L~~N~l~~lp~~l~-~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 245 LHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp EECCSSCCSSCCTTTT-TCSSCCEEECCSSCCCCCCT
T ss_pred EECCCCcCccCChhhc-cCCCcCEEECCCCcCCccCh
Confidence 8888888888888887 88888888888887777764
No 95
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.93 E-value=2.2e-09 Score=94.05 Aligned_cols=61 Identities=13% Similarity=0.003 Sum_probs=26.1
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN 176 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~ 176 (235)
...++.|.+..+.........+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.+.
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV----IPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB----CCTTTSSSCTTCCEEECCSCCCC
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc----cChhhhcccCCCCEEECCCCCcc
Confidence 3445555555554432222222 4555555555444432 11223344444444444444433
No 96
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=91.72 Aligned_cols=97 Identities=25% Similarity=0.146 Sum_probs=83.7
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~ 211 (235)
.++++.|.+.++.... ..+..+.++++|+.|++++|.+..+ |..++.+.+|++|++++|.+..+|.. ++ ++++
T Consensus 51 ~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~ 125 (353)
T 2z80_A 51 TEAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK-PLSS 125 (353)
T ss_dssp CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT-TCTT
T ss_pred cccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC-CCcc
Confidence 7799999999888764 3344789999999999999999866 56799999999999999999999987 67 9999
Q ss_pred ccEEeCcCCCCccccH--hhcccCCC
Q 043825 212 LYTLNMPFSDIDHIAD--EFWKMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~--~i~~L~~L 235 (235)
|++|++++|.+..+|. .++++++|
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCEEECCCCCCcccCchhhhccCCCC
Confidence 9999999999999987 56666654
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.92 E-value=5.2e-10 Score=93.68 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=94.7
Q ss_pred CCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
...+++|.+..+......+... +++|+.|.+.++.... .+ ....+++|+.|++++|.+..+|..+..+.+|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 216 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-----cc-cccccccCCEEECCCCcCCcchhhhcccCcc
Confidence 4678999998887764333333 6899999999888753 22 2335899999999999999999889999999
Q ss_pred cEEecccCCCcccchHHHhcCccccEEeCcCCCCc--cccHhhcccC
Q 043825 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID--HIADEFWKMN 233 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~ 233 (235)
++|++++|.+..+|..+. .+++|+.|++++|.+. .+|..++.++
T Consensus 217 ~~L~L~~N~l~~l~~~~~-~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp SEEECTTSCCCEECTTCC-CCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred cEEECcCCcccchhhHhh-cCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 999999999999999999 9999999999999766 6777666554
No 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.92 E-value=2.4e-09 Score=93.55 Aligned_cols=42 Identities=33% Similarity=0.513 Sum_probs=18.8
Q ss_pred cCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCccc
Q 043825 182 IENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHI 225 (235)
Q Consensus 182 i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 225 (235)
+..+.+|++|++++|.+..+|. +. .+++|++|++++|.+..+
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~~~-~~-~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREIPN-LT-PLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSCCC-CT-TCSSCCEEECTTSCCCEE
T ss_pred hhcccccCeecCCCCcCccccc-cC-CCcccCEEECCCCccCcc
Confidence 3444444444444444444442 33 444444444444444433
No 99
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.92 E-value=2.3e-09 Score=94.31 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=82.2
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY 190 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~ 190 (235)
..++++.+...... ..+.+ +++|+.|.+.++.... .+. +.++++|+.|++++|.+..++. ++.+.+|++
T Consensus 46 ~~l~~L~l~~~~i~--~l~~~~~l~~L~~L~Ls~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTD-----ITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCC--CCTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred ccccEEecCCCCCc--cCcchhhhcCCCEEECCCCccCC-----chh-hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 46777777766554 22333 8888888888877653 333 7888888888888888887776 888888888
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
|++++|.+..+|. +. ++++|++|++++|.+..+|. ++++++
T Consensus 117 L~L~~n~l~~~~~-~~-~l~~L~~L~l~~n~l~~~~~-~~~l~~ 157 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LK-NLTNLNRLELSSNTISDISA-LSGLTS 157 (466)
T ss_dssp EECCSSCCCCCGG-GT-TCTTCSEEEEEEEEECCCGG-GTTCTT
T ss_pred EECCCCCCCCChH-Hc-CCCCCCEEECCCCccCCChh-hccCCc
Confidence 8888888888876 77 88888888888887776663 554443
No 100
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=8.3e-11 Score=91.90 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=77.8
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr 189 (235)
...++.|.+..+.... .+.+ +++|+.|.+.++... .++..+..+++|+.|++++|.+..+| .++.+.+|+
T Consensus 47 l~~L~~L~ls~n~l~~--l~~~~~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp TTTCSEEECSEEEESC--CCCHHHHTTCCEEEEEEEEEC-----SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred CCCCCEEECCCCCCcc--ccccccCCCCCEEECCCCCcc-----cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 4567777776665543 2234 788888888877665 34556677788888888888888776 577888888
Q ss_pred EEecccCCCcccch--HHHhcCccccEEeCcCCCCccc
Q 043825 190 YLKLNIPSLKSLPS--SFFNYLSNLYTLNMPFSDIDHI 225 (235)
Q Consensus 190 ~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~l 225 (235)
+|++++|.+..+|. .+. .+++|++|++++|.+...
T Consensus 119 ~L~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEESEEECCCHHHHHHHT-TTTTCSEEEECSCHHHHH
T ss_pred EEECCCCcCCchhHHHHHh-cCCCCCEEEecCCccccc
Confidence 88888888887765 677 888888888888866544
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=5e-09 Score=85.52 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
+++|+.|.+.++.... ++. +..+++|+.|++++|.++.+|.... .+|++|++++|.++.+| .+. ++++|+
T Consensus 62 l~~L~~L~L~~N~i~~-----~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~-~l~~L~ 131 (263)
T 1xeu_A 62 FTNLKELHLSHNQISD-----LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLI-HLKNLE 131 (263)
T ss_dssp CTTCCEEECCSSCCCC-----CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGT-TCTTCC
T ss_pred CCCCCEEECCCCccCC-----Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhc-Cccccc
Confidence 4555555555444432 112 4455555555555555554443222 45555555555555443 344 555555
Q ss_pred EEeCcCCCCcccc
Q 043825 214 TLNMPFSDIDHIA 226 (235)
Q Consensus 214 ~L~l~~~~l~~lP 226 (235)
+|++++|.+..+|
T Consensus 132 ~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 132 ILSIRNNKLKSIV 144 (263)
T ss_dssp EEECTTSCCCBCG
T ss_pred EEECCCCcCCCCh
Confidence 5555555554444
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.89 E-value=4.6e-09 Score=88.28 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=83.5
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
....++.|.+..+.........+ +++|+.|.+.++.... ..+..+..+++|+.|++++|.+..+|..+. .+|
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 34578888888877664333334 8899999998887753 346778889999999999999888888776 789
Q ss_pred cEEecccCCCcccchH-HHhcCccccEEeCcCCCCc
Q 043825 189 RYLKLNIPSLKSLPSS-FFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~ 223 (235)
++|++++|.+..+|.. +. ++++|++|++++|.+.
T Consensus 126 ~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFS-GLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CEEECCSSCCCCCCSGGGS-SCSSCCEEECCSCCCB
T ss_pred CEEECCCCccCccCHhHhC-CCccCCEEECCCCccc
Confidence 9999999988888765 56 8889999999888664
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.89 E-value=2.5e-09 Score=94.94 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=90.2
Q ss_pred CCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhcC-CcccCcE
Q 043825 113 KNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEIE-NLSLLRY 190 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~-~L~~Lr~ 190 (235)
..+++|.+..+...... ...+++|+.|.+.++.... ..+..+..++.|+.|++++|.+.. .|..+. .+.+|++
T Consensus 99 ~~L~~L~L~~N~l~~~~-~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCEE-ECCCSSCEEEECCSSCCCS----GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCCC-ccccCCCCEEECCCCCCCC----CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 44556666555544211 1127788999998888764 446678899999999999999985 566775 7999999
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
|+|++|.+..+|. .. .+++|++|++++|.+..+|+.++.+++|
T Consensus 174 L~Ls~N~l~~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L 216 (487)
T 3oja_A 174 LNLQYNFIYDVKG-QV-VFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (487)
T ss_dssp EECTTSCCCEEEC-CC-CCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred EecCCCccccccc-cc-cCCCCCEEECCCCCCCCCCHhHcCCCCc
Confidence 9999999998865 44 6999999999999999999888887765
No 104
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.88 E-value=2.1e-09 Score=96.07 Aligned_cols=97 Identities=24% Similarity=0.105 Sum_probs=83.3
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~ 211 (235)
.+++++|.+.++.... ..+..|.++++|++|++++|.+..++ ..++.+.+|++|++++|.+..+|+. ++ ++++
T Consensus 25 ~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSS 99 (549)
T ss_dssp CTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTT
T ss_pred CCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc-cCCC
Confidence 6799999999988764 34567899999999999999998665 6899999999999999999988876 88 9999
Q ss_pred ccEEeCcCCCCcc--ccHhhcccCCC
Q 043825 212 LYTLNMPFSDIDH--IADEFWKMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~--lP~~i~~L~~L 235 (235)
|++|++++|.+.. +|..++++++|
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CcEEECCCCcccccchhhhhhccCCc
Confidence 9999999998774 46677777654
No 105
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.87 E-value=1.6e-09 Score=105.34 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=70.2
Q ss_pred CeeeeeccCCCCc-------cCcCCCCCCCCCCcChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeeCCCCc
Q 043825 4 PETSTSQWNIPTR-------DEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGT 76 (235)
Q Consensus 4 p~l~lSY~~Lp~~-------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~~~g~ 76 (235)
.++.+||+.||.+ ||+||+++. |+++.++++|.++ ++.+++++++|+++||++... ++.
T Consensus 366 ~~l~~s~~~L~~~~~~~~~~l~~f~~~~~----i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~ 431 (1249)
T 3sfz_A 366 EAMSISVEMLREDIKDYYTDLSILQKDVK----VPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGK 431 (1249)
T ss_dssp HHHHHHHHTSCTTTHHHHHHGGGSCTTCC----EEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSS
T ss_pred HHHHHHHHhCCHHHHHHHHHhCccCCCCe----eCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCC
Confidence 3578999999998 999999999 9999999999765 566899999999999999764 345
Q ss_pred eeeEEeChhHHHHHHHhhcccc
Q 043825 77 IKTCSIRSRCWPSLLVVALNAE 98 (235)
Q Consensus 77 ~~~~~mhdlv~dla~~~~~~e~ 98 (235)
...|+|||+||++|+..+.++.
T Consensus 432 ~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 432 SFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp SEEEECCHHHHHHHHHHTGGGH
T ss_pred ceEEEecHHHHHHHHhhhhHHH
Confidence 5679999999999999987663
No 106
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.87 E-value=3.1e-09 Score=96.20 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=82.9
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 187 (235)
....+++|.+..+......+..+ +++|++|.+.++.... ..+..|..+++|++|++++|.+..+ |..++.+.+
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF----MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE----ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc----cChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 45677888887776654334444 7888888887776653 3456677888888888888887765 566778888
Q ss_pred CcEEecccCCCcccc-hHHHhcCccccEEeCcCCCCccc-cHhhcccCC
Q 043825 188 LRYLKLNIPSLKSLP-SSFFNYLSNLYTLNMPFSDIDHI-ADEFWKMNK 234 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~ 234 (235)
|++|++++|.+..++ +.+. .+++|++|++++|.+..+ |..++.+++
T Consensus 131 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred ccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcc
Confidence 888888888777653 3444 577888888888877665 445555544
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.86 E-value=5.8e-09 Score=94.95 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=91.3
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLR 189 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr 189 (235)
....++.|.+..+...... +.. +++|+.|.+.++.... + +.+..+++|+.|+|++|.+..+| .+..+.+|+
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 134 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKD-----L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 134 (605)
T ss_dssp GCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-----C-TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCS
T ss_pred cCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCCCCC-----C-hhhccCCCCCEEEecCCCCCCCc-cccCCCccC
Confidence 4567888888887765322 222 8999999999887753 2 35788999999999999988764 588899999
Q ss_pred EEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 190 YLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 190 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
.|+|++|.+..+ ..++ .+++|+.|+|++|.+..+++ +..+++|
T Consensus 135 ~L~Ls~N~l~~l-~~l~-~l~~L~~L~Ls~N~l~~~~~-l~~l~~L 177 (605)
T 1m9s_A 135 SLYLGNNKITDI-TVLS-RLTKLDTLSLEDNQISDIVP-LAGLTKL 177 (605)
T ss_dssp EEECCSSCCCCC-GGGG-SCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred EEECCCCccCCc-hhhc-ccCCCCEEECcCCcCCCchh-hccCCCC
Confidence 999999999888 6788 99999999999998888766 7776654
No 108
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.86 E-value=3.4e-09 Score=89.04 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=89.1
Q ss_pred CeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEe
Q 043825 114 NVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLK 192 (235)
Q Consensus 114 ~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~ 192 (235)
..+.+.+....... .+....++++.|.+.++.... ..+..|.++++|++|++++|.+..+ |..++.+.+|++|+
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEISPDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccc-cCCCCCCCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 34555555444431 222237899999999888753 3456789999999999999999866 78899999999999
Q ss_pred cccCCCcccchHHHhcCccccEEeCcCCCCccccHh-hcccCCC
Q 043825 193 LNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADE-FWKMNKL 235 (235)
Q Consensus 193 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~L 235 (235)
+++|.+..+|..+. ++|++|++++|.+..+|.. +..+++|
T Consensus 109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp CCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred CCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccC
Confidence 99999999998754 7999999999999888764 6666654
No 109
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.85 E-value=1.3e-10 Score=90.85 Aligned_cols=94 Identities=20% Similarity=0.166 Sum_probs=63.6
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
+++|+.|.+.++.... ++ .+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+| .++ .+++|+
T Consensus 47 l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~-~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE-KLVNLR 118 (198)
T ss_dssp TTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH-HHHHSS
T ss_pred CCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc-cCCCCC
Confidence 6777777776665542 23 566677777777777777777776666677777777777777766 566 677777
Q ss_pred EEeCcCCCCccccH--hhcccCCC
Q 043825 214 TLNMPFSDIDHIAD--EFWKMNKL 235 (235)
Q Consensus 214 ~L~l~~~~l~~lP~--~i~~L~~L 235 (235)
+|++++|.+..+|. .+..+++|
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKL 142 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTC
T ss_pred EEECCCCcCCchhHHHHHhcCCCC
Confidence 77777776666554 45555443
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.84 E-value=9.3e-10 Score=91.75 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=35.2
Q ss_pred hhccCccCeEEEeCCccccc-chhcCCc---ccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcccc
Q 043825 159 CEMYKLLRALDLGYLVLNQY-LSEIENL---SLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 159 ~~~l~~Lr~L~l~~~~l~~l-p~~i~~L---~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
+..+++|+.|++++|.+... |+.++.+ .+|++|++++|.++.+|..+. ++|++|++++|.+..+|
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCc
Confidence 34555555556655555533 5555444 355666666655555555433 45566666666555443
No 111
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.84 E-value=4.7e-09 Score=92.40 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=45.8
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccchH-HHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPSS-FFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~~L~~ 211 (235)
+++|+.|.+.++.... ..+..|..+++|+.|++++|.+..+ |..+..+.+|++|++++|.+..+|.. +. ++++
T Consensus 103 l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~ 177 (477)
T 2id5_A 103 LSNLTKLDISENKIVI----LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS-HLHG 177 (477)
T ss_dssp CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT-TCTT
T ss_pred CCCCCEEECCCCcccc----CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc-ccCC
Confidence 4445555444444332 2233445555555555555555433 34455555666666666655555543 44 5666
Q ss_pred ccEEeCcCCCCcccc
Q 043825 212 LYTLNMPFSDIDHIA 226 (235)
Q Consensus 212 L~~L~l~~~~l~~lP 226 (235)
|+.|++++|.+..++
T Consensus 178 L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 178 LIVLRLRHLNINAIR 192 (477)
T ss_dssp CCEEEEESCCCCEEC
T ss_pred CcEEeCCCCcCcEeC
Confidence 666666666555443
No 112
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.83 E-value=1.2e-08 Score=85.14 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=76.5
Q ss_pred CCCCeEEEEEEcCCCCccccccc--C-----CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc---cch
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--Y-----PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ---YLS 180 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~-----~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~---lp~ 180 (235)
....+++|.+..+..... +..+ + ++|+.|.+.++.... ..+..+..+++|+.|++++|.+.. +|.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN----FSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC----CCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc----chHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 456778888887776533 2222 2 788888888877754 334667788888888888887542 455
Q ss_pred hc--CCcccCcEEecccCCCccc---chHHHhcCccccEEeCcCCCCcccc
Q 043825 181 EI--ENLSLLRYLKLNIPSLKSL---PSSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 181 ~i--~~L~~Lr~L~l~~~~l~~l---P~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
.+ +.+.+|++|++++|.+..+ |..+..++++|++|++++|.+...+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 55 7788888888888888744 3333226788888888888776543
No 113
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.82 E-value=1.1e-08 Score=93.85 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=84.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccccc-chhcCCcccCcEEecccCCCcccch-HHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQY-LSEIENLSLLRYLKLNIPSLKSLPS-SFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~~L~~ 211 (235)
.+++++|.+.++.... ..+..|.+++.|++|++++|.+..+ |..++++.+|++|++++|.+..+|. .++ ++++
T Consensus 24 ~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTN 98 (680)
T ss_dssp CTTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT-TCTT
T ss_pred CCCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc-cCCC
Confidence 6899999999988765 4456799999999999999998855 7789999999999999999999998 488 9999
Q ss_pred ccEEeCcCCCCcccc-HhhcccCCC
Q 043825 212 LYTLNMPFSDIDHIA-DEFWKMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~lP-~~i~~L~~L 235 (235)
|++|++++|.+..+| ..++++++|
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred CCEEECCCCccCccChhHccccCCC
Confidence 999999999888887 467777664
No 114
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.80 E-value=1.3e-08 Score=84.96 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=29.7
Q ss_pred hccCccCeEEEeCCcccccc---hh-cCCcccCcEEecccCCCcccc--hHHHhcCccccEEeCcCCCCccccHh
Q 043825 160 EMYKLLRALDLGYLVLNQYL---SE-IENLSLLRYLKLNIPSLKSLP--SSFFNYLSNLYTLNMPFSDIDHIADE 228 (235)
Q Consensus 160 ~~l~~Lr~L~l~~~~l~~lp---~~-i~~L~~Lr~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~~ 228 (235)
..+++|+.|++++|.+..+| .. +..+.+|++|++++|.+...+ ..+. .+++|++|++++|.+..+|..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD-WPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC-CCTTCCEEECTTSCCSSCCSS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh-hcCCCCEEECCCCccChhhhh
Confidence 44445555555555444222 11 123444555555555444332 1222 344555555555544444443
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.80 E-value=1.2e-08 Score=89.75 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=46.5
Q ss_pred CCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825 113 KNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY 190 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~ 190 (235)
..++++.+..+..... +.+ +++|+.|.+.++.... ++ +..+++|++|++++|.++.+| ++.+.+|++
T Consensus 42 ~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-----~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT-----LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC--hhhcccCCCCEEEccCCcCCe-----Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 3445555544443321 122 5555555555554432 11 444555555555555554443 445555555
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccc
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHI 225 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l 225 (235)
|++++|.+..+| ++ ++++|++|++++|.+..+
T Consensus 111 L~L~~N~l~~l~--~~-~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VS-QNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp EECCSSCCSCCC--CT-TCTTCCEEECTTSCCSCC
T ss_pred EECCCCcCCeec--CC-CCCcCCEEECCCCcccee
Confidence 555555554443 44 455555555555544443
No 116
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=9.4e-09 Score=86.80 Aligned_cols=86 Identities=17% Similarity=0.018 Sum_probs=68.7
Q ss_pred CCCcceEEEec-CCCCCCCCcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCcc
Q 043825 134 YPHLHSLLYFT-SESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~ 211 (235)
+++|+.|.+.+ +.... ..+..|..+++|+.|+|++|.++.+| ..+..|.+|++|+|++|.+..+|..+. ....
T Consensus 30 ~~~L~~L~l~~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~~ 104 (347)
T 2ifg_A 30 AENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLS 104 (347)
T ss_dssp CSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCC
T ss_pred CCCeeEEEccCCCCCCC----cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc-ccCC
Confidence 77889999886 76654 34567888999999999999988664 467889999999999999999988776 5555
Q ss_pred ccEEeCcCCCCcc
Q 043825 212 LYTLNMPFSDIDH 224 (235)
Q Consensus 212 L~~L~l~~~~l~~ 224 (235)
|+.|+|.+|.+..
T Consensus 105 L~~l~l~~N~~~c 117 (347)
T 2ifg_A 105 LQELVLSGNPLHC 117 (347)
T ss_dssp CCEEECCSSCCCC
T ss_pred ceEEEeeCCCccC
Confidence 9999998886653
No 117
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.77 E-value=3.4e-08 Score=83.18 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccC
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLL 188 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 188 (235)
....++++.+..+.... .+.+ +++|+.|.+.++.... .+. +..++.|+.|++++|.....+..+..+.+|
T Consensus 86 ~l~~L~~L~L~~n~i~~--~~~~~~l~~L~~L~l~~n~i~~-----~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L 157 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD-----ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGL 157 (347)
T ss_dssp TCTTCCEEECCSSCCCC--CGGGTTCTTCSEEECTTSCCCC-----CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTC
T ss_pred cCCcCCEEEccCCcccC--chHHcCCCcCCEEECcCCcccC-----chh-hccCCceeEEECCCCCCcccccchhhCCCC
Confidence 44567777776665542 2333 7777777777666543 222 667777777777777544334447777777
Q ss_pred cEEecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
++|++++|.+..++. +. .+++|++|++++|.+..+|. +..+++
T Consensus 158 ~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~l~~~~~-~~~l~~ 200 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP-IA-NLTDLYSLSLNYNQIEDISP-LASLTS 200 (347)
T ss_dssp CEEECCSSCCCCCGG-GG-GCTTCSEEECTTSCCCCCGG-GGGCTT
T ss_pred cEEEecCCCcCCchh-hc-cCCCCCEEEccCCccccccc-ccCCCc
Confidence 777777777776665 66 77777777777777666664 444443
No 118
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.77 E-value=2.1e-08 Score=83.45 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=85.9
Q ss_pred CCCCeEEEEEEcCCCCcccc----cc-c-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc---cch-
Q 043825 111 SRKNVKRFCALEQQSDFAYL----DD-Y-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ---YLS- 180 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~----~~-~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~---lp~- 180 (235)
....++.|.+..+....... .. . +++|+.|.+.++.... ..+..+..+++|++|++++|.+.. ++.
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 190 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA----FSCEQVRAFPALTSLDLSDNPGLGERGLMAA 190 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC----CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch----hhHHHhccCCCCCEEECCCCCCccchhhhHH
Confidence 45677888888877653111 11 1 7889999998887754 345677889999999999998652 433
Q ss_pred -hcCCcccCcEEecccCCCcccchH----HHhcCccccEEeCcCCCCccc-cHhhccc
Q 043825 181 -EIENLSLLRYLKLNIPSLKSLPSS----FFNYLSNLYTLNMPFSDIDHI-ADEFWKM 232 (235)
Q Consensus 181 -~i~~L~~Lr~L~l~~~~l~~lP~~----i~~~L~~L~~L~l~~~~l~~l-P~~i~~L 232 (235)
.++.+++|++|++++|.++.+|.. +. .+++|++|++++|.+..+ |..+..+
T Consensus 191 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 191 LCPHKFPAIQNLALRNTGMETPTGVCAALAA-AGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH-HTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred HhhhcCCCCCEEECCCCCCCchHHHHHHHHh-cCCCCCEEECCCCCCCccchhhHHhc
Confidence 346888999999999998877663 46 789999999999988766 7666554
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.75 E-value=1.6e-08 Score=91.37 Aligned_cols=41 Identities=10% Similarity=0.237 Sum_probs=19.4
Q ss_pred cEEecccCCCcccchHHHhcCccccEEeCcCCCCc-cccHhhc
Q 043825 189 RYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID-HIADEFW 230 (235)
Q Consensus 189 r~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~ 230 (235)
++|++++|.++.+|..++ ++++|++|++++|.+. .+|..+.
T Consensus 210 ~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 210 IFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp EEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHH
T ss_pred eEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHH
Confidence 445555554445555554 4555555555555332 3344433
No 120
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.75 E-value=1.1e-08 Score=96.59 Aligned_cols=98 Identities=21% Similarity=0.255 Sum_probs=82.8
Q ss_pred cCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-cccc-chhcCCcccCcEEecccCCCccc-chHHHhcC
Q 043825 133 YYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LNQY-LSEIENLSLLRYLKLNIPSLKSL-PSSFFNYL 209 (235)
Q Consensus 133 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~l-p~~i~~L~~Lr~L~l~~~~l~~l-P~~i~~~L 209 (235)
..+++++|.+.++.... ..+..|.++++|++|++++|. ...+ |..++++.+|++|+|++|.+..+ |..++ ++
T Consensus 22 lp~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ-GL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-SC
T ss_pred CCCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-CC
Confidence 57899999999988764 446778999999999999996 4455 78899999999999999999877 77888 99
Q ss_pred ccccEEeCcCCCCcc-ccHh--hcccCCC
Q 043825 210 SNLYTLNMPFSDIDH-IADE--FWKMNKL 235 (235)
Q Consensus 210 ~~L~~L~l~~~~l~~-lP~~--i~~L~~L 235 (235)
++|++|++++|.+.. +|.. ++++++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCC
Confidence 999999999997764 5654 7777664
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.74 E-value=5.6e-09 Score=87.53 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=87.9
Q ss_pred CCCCeEEEEEEcCCCCcc-ccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCC-ccc--ccchhcCC
Q 043825 111 SRKNVKRFCALEQQSDFA-YLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYL-VLN--QYLSEIEN 184 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~-~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~--~lp~~i~~ 184 (235)
...+++++.+..+..... ..... +++|++|.+.++.... ..+..+..+++|+.|++++| .++ .+|..+..
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 446778888777654422 22222 8889999888876542 45667788899999999998 576 47777888
Q ss_pred cccCcEEecccC-CCcc--cchHHHhcCc-cccEEeCcCCC--C--ccccHhhcccCCC
Q 043825 185 LSLLRYLKLNIP-SLKS--LPSSFFNYLS-NLYTLNMPFSD--I--DHIADEFWKMNKL 235 (235)
Q Consensus 185 L~~Lr~L~l~~~-~l~~--lP~~i~~~L~-~L~~L~l~~~~--l--~~lP~~i~~L~~L 235 (235)
+++|++|++++| .+.. +|..+. .++ +|++|++++|. + ..+|..+.++++|
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 224 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence 889999999998 7774 677788 888 99999999884 3 4577766666554
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.74 E-value=5.2e-08 Score=85.62 Aligned_cols=63 Identities=25% Similarity=0.320 Sum_probs=28.0
Q ss_pred hhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcc
Q 043825 159 CEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 159 ~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~ 224 (235)
+..++.|+.|++++|.+..+|. +..+.+|++|++++|.+..+|. ++ .+++|+.|++++|.+..
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~-~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-IS-NLKNLTYLTLYFNNISD 323 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GG-GCTTCSEEECCSSCCSC
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hc-CCCCCCEEECcCCcCCC
Confidence 3444444444444444443333 4444444444444444444433 33 44444444444443333
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.73 E-value=1.7e-08 Score=88.77 Aligned_cols=89 Identities=19% Similarity=0.084 Sum_probs=78.2
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCcccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLY 213 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~ 213 (235)
++++++|.+.++.... .+ .+..++.|++|++++|.++.+| ++.+.+|++|++++|.+..+| ++ ++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~-~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-----MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT-PLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC-----CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT-TCTTCC
T ss_pred cCCCCEEEccCCCccc-----Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC-CCCcCC
Confidence 8899999999987763 33 5889999999999999999886 899999999999999999986 88 999999
Q ss_pred EEeCcCCCCccccHhhcccCCC
Q 043825 214 TLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 214 ~L~l~~~~l~~lP~~i~~L~~L 235 (235)
+|++++|.+..+| ++++++|
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L 129 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLL 129 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTC
T ss_pred EEECCCCcCCeec--CCCCCcC
Confidence 9999999888887 6666554
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.67 E-value=3.2e-08 Score=84.76 Aligned_cols=96 Identities=18% Similarity=0.114 Sum_probs=49.1
Q ss_pred CCCcceEEEecCCCCCCCCcchhH-HhhccCccCeEEEeCCcc-----cccchhcCCcccCcEEecccCCCcc-----cc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQK-ICEMYKLLRALDLGYLVL-----NQYLSEIENLSLLRYLKLNIPSLKS-----LP 202 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~l-----~~lp~~i~~L~~Lr~L~l~~~~l~~-----lP 202 (235)
+++|++|.+.++.........+.+ .+..+++|+.|+|++|.+ ..+|..+..+++|++|++++|.+.. +|
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 556666666555442100000112 445566666666666665 3455555666666666666665542 34
Q ss_pred hHHH-hcCccccEEeCcCCCCcc-----ccHhh
Q 043825 203 SSFF-NYLSNLYTLNMPFSDIDH-----IADEF 229 (235)
Q Consensus 203 ~~i~-~~L~~L~~L~l~~~~l~~-----lP~~i 229 (235)
..+. .++++|++|++++|.+.. +|..+
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 4442 025666666666665554 55544
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=3.2e-08 Score=83.49 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=62.7
Q ss_pred chhHHhhccCccCeEEEeC-Ccccccc-hhcCCcccCcEEecccCCCcccch-HHHhcCccccEEeCcCCCCccccHhhc
Q 043825 154 DWQKICEMYKLLRALDLGY-LVLNQYL-SEIENLSLLRYLKLNIPSLKSLPS-SFFNYLSNLYTLNMPFSDIDHIADEFW 230 (235)
Q Consensus 154 ~~~~~~~~l~~Lr~L~l~~-~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~lP~~i~ 230 (235)
.+|. +..+++|+.|+|++ |.+..+| ..++.|.+|++|+|++|.+..+|+ .+. +|++|+.|+|++|.+..+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCCCCccceeCHHHc
Confidence 3556 88888999999996 8888776 578899999999999999988876 457 89999999999998888887554
Q ss_pred c
Q 043825 231 K 231 (235)
Q Consensus 231 ~ 231 (235)
.
T Consensus 101 ~ 101 (347)
T 2ifg_A 101 Q 101 (347)
T ss_dssp C
T ss_pred c
Confidence 3
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.66 E-value=9.3e-09 Score=86.17 Aligned_cols=105 Identities=18% Similarity=0.091 Sum_probs=56.9
Q ss_pred CCCeEEEEEEcC-CCCcccccc-c--CCCcceEEEecC-CCCCCCCcchhHHhhccC-ccCeEEEeCCc--c--cccchh
Q 043825 112 RKNVKRFCALEQ-QSDFAYLDD-Y--YPHLHSLLYFTS-ESDHLDPIDWQKICEMYK-LLRALDLGYLV--L--NQYLSE 181 (235)
Q Consensus 112 ~~~~r~lsl~~~-~~~~~~~~~-~--~~~LrsL~~~~~-~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~--l--~~lp~~ 181 (235)
..++++|.+..+ .......+. . +++|+.|.+.++ ..... .++..+..++ +|+.|++++|. + ..+|..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH---HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 345556655554 222111111 2 566666666655 33210 1345556666 66666666663 2 245555
Q ss_pred cCCcccCcEEecccCC-Cc-ccchHHHhcCccccEEeCcCC
Q 043825 182 IENLSLLRYLKLNIPS-LK-SLPSSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 182 i~~L~~Lr~L~l~~~~-l~-~lP~~i~~~L~~L~~L~l~~~ 220 (235)
+..+++|++|++++|. +. ..+..++ ++++|++|++++|
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~ 257 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRC 257 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTC
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCC
Confidence 5666666666666665 33 4555666 6666666666666
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.64 E-value=1e-07 Score=86.95 Aligned_cols=57 Identities=25% Similarity=0.135 Sum_probs=30.6
Q ss_pred CccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCc
Q 043825 163 KLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 163 ~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~ 223 (235)
++|+.|++++|.++.+|. .+.+|++|++++|.+..+|..++ ++++|+.|++++|.+.
T Consensus 241 ~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~-~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLS 297 (622)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGG-GSCTTCEEECCSCCCC
T ss_pred CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHh-hccccCEEEecCCCCC
Confidence 444455555555444444 34455555555555555555555 5566666666655443
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.63 E-value=3.6e-08 Score=89.11 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=82.2
Q ss_pred CeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEec
Q 043825 114 NVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKL 193 (235)
Q Consensus 114 ~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l 193 (235)
++++|.+..+.... .+. .+++|+.|.+.++.... ++. .+++|+.|++++|.++.+|. ++ .+|++|++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEEC
Confidence 56666666665543 111 46788888888877754 222 57899999999999999998 66 89999999
Q ss_pred ccCCCcccchHHHhcCccc-------cEEeCcCCCCccccHhhcccCCC
Q 043825 194 NIPSLKSLPSSFFNYLSNL-------YTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 194 ~~~~l~~lP~~i~~~L~~L-------~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
++|.++.+|. +. . +| ++|++++|.+..+|.++.++++|
T Consensus 188 s~N~L~~lp~-~~-~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 188 STNLLESLPA-VP-V--RNHHSEETEIFFRCRENRITHIPENILSLDPT 232 (571)
T ss_dssp CSSCCSSCCC-CC-----------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred cCCCCCchhh-HH-H--hhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence 9999999998 66 4 77 99999999999999999888765
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.62 E-value=3.9e-08 Score=86.43 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=43.8
Q ss_pred CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecccCCCcccchHHHhcCccccE
Q 043825 135 PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYT 214 (235)
Q Consensus 135 ~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~ 214 (235)
++|+.|.+.++.... ++ .+..+++|++|++++|.++.+|..+ .+|++|++++|.+..+| .++ ++++|++
T Consensus 131 ~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~-~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQ-NLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCT-TCTTCCE
T ss_pred CCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-ccc-CCCCCCE
Confidence 455566555554432 22 3556666666666666655555433 25555666665555555 355 5555555
Q ss_pred EeCcCCCCcccc
Q 043825 215 LNMPFSDIDHIA 226 (235)
Q Consensus 215 L~l~~~~l~~lP 226 (235)
|++++|.+..+|
T Consensus 200 L~l~~N~l~~l~ 211 (454)
T 1jl5_A 200 IYADNNSLKKLP 211 (454)
T ss_dssp EECCSSCCSSCC
T ss_pred EECCCCcCCcCC
Confidence 555555444444
No 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.62 E-value=8.6e-09 Score=97.74 Aligned_cols=73 Identities=18% Similarity=0.081 Sum_probs=62.4
Q ss_pred CeeeeeccCCCCc--------cCcCCCCCCCCCCcChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeeCCCC
Q 043825 4 PETSTSQWNIPTR--------DEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGG 75 (235)
Q Consensus 4 p~l~lSY~~Lp~~--------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~~~g 75 (235)
+.|++||+.||.+ ||+||+++. |+++.++.+|+++| ++.++.++++|+++|||+.. +
T Consensus 357 aaLelSYd~Lp~eelK~cFL~LAIFPed~~----I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d-----~ 421 (1221)
T 1vt4_I 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ-----P 421 (1221)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHTTSSCTTSC----EEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC-----S
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhCCCCCCC----CCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe-----C
Confidence 4678999999987 999999999 99999999999987 23588999999999999983 2
Q ss_pred ceeeEEeChhHHHHHH
Q 043825 76 TIKTCSIRSRCWPSLL 91 (235)
Q Consensus 76 ~~~~~~mhdlv~dla~ 91 (235)
....|+|||++++++.
T Consensus 422 ~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 422 KESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSEEBCCCHHHHHHH
T ss_pred CCCEEEehHHHHHHhc
Confidence 2346999999999663
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.58 E-value=1.5e-07 Score=82.80 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=87.2
Q ss_pred CCCCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcE
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRY 190 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~ 190 (235)
.+..++++.+..+.... .+...++|+.|.+.++.....+ . ..++|++|++++|.++.+| .++.+.+|++
T Consensus 89 ~~~~L~~L~l~~n~l~~--lp~~~~~L~~L~l~~n~l~~l~-----~---~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKALS-----D---LPPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CCTTCSEEECCSSCCSS--CCCCCTTCCEEECCSSCCSCCC-----S---CCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CcCCCCEEEccCCcCCc--cccccCCCcEEECCCCccCccc-----C---CCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 56788999988877663 2333689999999888775422 1 1268999999999999988 5999999999
Q ss_pred EecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 191 LKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 191 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
|++++|.++.+|.. ..+|++|++++|.+..+| +++++++|
T Consensus 158 L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L 197 (454)
T 1jl5_A 158 IDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFL 197 (454)
T ss_dssp EECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred EECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCC
Confidence 99999999998854 458999999999988898 57777654
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.57 E-value=1.2e-07 Score=86.53 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=82.4
Q ss_pred CCCeEEEEEEcCCCCcccccccCCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEE
Q 043825 112 RKNVKRFCALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYL 191 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L 191 (235)
...++.|.+..+... ..+...++|+.|.+.++..... + ..+++|+.|++++|.++.+| ..+.+|++|
T Consensus 180 ~~~L~~L~Ls~N~l~--~l~~~~~~L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L 246 (622)
T 3g06_A 180 PSGLQELSVSDNQLA--SLPTLPSELYKLWAYNNRLTSL-----P---ALPSGLKELIVSGNRLTSLP---VLPSELKEL 246 (622)
T ss_dssp CTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSSC-----C---CCCTTCCEEECCSSCCSCCC---CCCTTCCEE
T ss_pred CCCCcEEECCCCCCC--CCCCccchhhEEECcCCccccc-----C---CCCCCCCEEEccCCccCcCC---CCCCcCcEE
Confidence 355666666666544 2222367778888777766532 2 23478999999999999888 566889999
Q ss_pred ecccCCCcccchHHHhcCccccEEeCcCCCCccccHhhcccCCC
Q 043825 192 KLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNKL 235 (235)
Q Consensus 192 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~L 235 (235)
++++|.++.+|. .+++|++|++++|.+..+|..+.++++|
T Consensus 247 ~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 247 MVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSE 286 (622)
T ss_dssp ECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTT
T ss_pred ECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhcccc
Confidence 999999999997 4679999999999999999999988875
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.56 E-value=1.9e-08 Score=86.25 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=79.1
Q ss_pred CCCeEEEEEEcCCCCccccccc------C---------CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY------Y---------PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN 176 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~------~---------~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~ 176 (235)
...+++|.+..+.........+ + ++|++|.+.++.........+...+..++.|+.|++++|.+.
T Consensus 121 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3567777777665531111111 2 788888887776642110012246778888888888888876
Q ss_pred ------ccchhcCCcccCcEEecccCCC-----cccchHHHhcCccccEEeCcCCCCcc-----ccHhh
Q 043825 177 ------QYLSEIENLSLLRYLKLNIPSL-----KSLPSSFFNYLSNLYTLNMPFSDIDH-----IADEF 229 (235)
Q Consensus 177 ------~lp~~i~~L~~Lr~L~l~~~~l-----~~lP~~i~~~L~~L~~L~l~~~~l~~-----lP~~i 229 (235)
..|..+..+++|++|++++|.+ ..+|..+. .+++|++|+|++|.+.. +|..+
T Consensus 201 ~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 2344778888899999988888 57788888 88899999998887654 45555
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.41 E-value=3.9e-07 Score=77.12 Aligned_cols=113 Identities=13% Similarity=-0.068 Sum_probs=69.8
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhcc-CccCeEEEeCCcccccchhcCCccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMY-KLLRALDLGYLVLNQYLSEIENLSL 187 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~~lp~~i~~L~~ 187 (235)
...+++++.+..+.......... ..++..+.+.++..... .....|..+ ..++.|++++|.++.+|..+....+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 34566777776665542221111 44455555544322110 112233443 3577788888888888877777777
Q ss_pred CcEEeccc-CCCcccchHH-HhcCccccEEeCcCCCCccccH
Q 043825 188 LRYLKLNI-PSLKSLPSSF-FNYLSNLYTLNMPFSDIDHIAD 227 (235)
Q Consensus 188 Lr~L~l~~-~~l~~lP~~i-~~~L~~L~~L~l~~~~l~~lP~ 227 (235)
|+.|.+++ |.++.+|... . .+++|++|++++|.++.+|.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~-~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFH-GASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTT-TEECCSEEECTTSCCCCCCS
T ss_pred hhHHhhccCCcccCCCHHHhc-cCcccchhhcCCCCcCccCh
Confidence 88888865 5688888654 5 78888888888888888775
No 135
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.40 E-value=3.1e-07 Score=83.01 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=64.8
Q ss_pred eeeeeccCCCCc-------cCcCCCCCCCCCCcChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeeCCCCce
Q 043825 5 ETSTSQWNIPTR-------DEYQPEEYTNQRQISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTI 77 (235)
Q Consensus 5 ~l~lSY~~Lp~~-------cs~fP~d~~~~~~i~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~~~~~~g~~ 77 (235)
.+..||+.||.+ ||+||+|+. |+.+.++.+|.++ .+.+.+++++|+++||++.... +..
T Consensus 367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~----i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~ 432 (591)
T 1z6t_A 367 AMSISVEMLREDIKDYYTDLSILQKDVK----VPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKS 432 (591)
T ss_dssp HHHHHHHTSCTTTHHHHHHGGGCCTTCC----EEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTE
T ss_pred HHHHHHHhCCHHHHHHHHHccccCCCCc----cCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CCc
Confidence 467899999988 999999999 9999999999754 3457889999999999996542 445
Q ss_pred eeEEeChhHHHHHHHhhc
Q 043825 78 KTCSIRSRCWPSLLVVAL 95 (235)
Q Consensus 78 ~~~~mhdlv~dla~~~~~ 95 (235)
..|+||+++|+++.....
T Consensus 433 ~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 433 FRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp EEEECCHHHHHHHHHHTG
T ss_pred cEEEEcHHHHHHHHhhhh
Confidence 679999999999998743
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.24 E-value=9.5e-07 Score=75.03 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=68.5
Q ss_pred CCeEEEEEEcCCCCccccccc-------CCCcceEEEecCCCCCCCCcchhHHhhccC-ccCeEEEeCCccccc-chh--
Q 043825 113 KNVKRFCALEQQSDFAYLDDY-------YPHLHSLLYFTSESDHLDPIDWQKICEMYK-LLRALDLGYLVLNQY-LSE-- 181 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~-------~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~l-p~~-- 181 (235)
..++.|.+..+.........+ .++|+.|.+.++.........+...+..++ .|+.|++++|.+... +..
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 567777776666542222111 247777777776654322112334455554 788888888877632 333
Q ss_pred --cCCc-ccCcEEecccCCCcc-----cchHHHhcC-ccccEEeCcCCCCcccc
Q 043825 182 --IENL-SLLRYLKLNIPSLKS-----LPSSFFNYL-SNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 182 --i~~L-~~Lr~L~l~~~~l~~-----lP~~i~~~L-~~L~~L~l~~~~l~~lP 226 (235)
+... .+|++|++++|.+.. +|..+. .+ ++|++|++++|.+...+
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFS-SIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-HSCTTCCEEECCSSCCCCCC
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-cCCCCceEEECcCCCCCcHH
Confidence 3334 578888888887776 677776 54 47888888888766543
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.21 E-value=1.8e-06 Score=73.27 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=66.8
Q ss_pred CeEEEEEEcCCCCccccccc--C-----CCcceEEEecCCCCCCCCcchhHHhhcc-CccCeEEEeCCcccccch-h---
Q 043825 114 NVKRFCALEQQSDFAYLDDY--Y-----PHLHSLLYFTSESDHLDPIDWQKICEMY-KLLRALDLGYLVLNQYLS-E--- 181 (235)
Q Consensus 114 ~~r~lsl~~~~~~~~~~~~~--~-----~~LrsL~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~~lp~-~--- 181 (235)
.+++|.+..+.........+ . ++|+.|.+.++.........+...+..+ +.|+.|++++|.+...+. .
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 67777777665543222222 1 7777777777765432111122234444 678888888887764332 2
Q ss_pred -cCC-cccCcEEecccCCCc-----ccchHHHhcCc-cccEEeCcCCCCccc
Q 043825 182 -IEN-LSLLRYLKLNIPSLK-----SLPSSFFNYLS-NLYTLNMPFSDIDHI 225 (235)
Q Consensus 182 -i~~-L~~Lr~L~l~~~~l~-----~lP~~i~~~L~-~L~~L~l~~~~l~~l 225 (235)
+.. ..+|++|++++|.+. .++..+. .+. +|++|++++|.+...
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchh
Confidence 333 257888888888766 5556666 665 788888888866544
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.16 E-value=7.3e-07 Score=77.72 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccC----ccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCccc-ch
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYK----LLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLKSL-PS 203 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~----~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~~l-P~ 203 (235)
+++|++|.+.++..... .....+..++ +|+.|++++|.+. .+|..+..+++|++|++++|.+... +.
T Consensus 55 ~~~L~~L~Ls~n~l~~~---~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 55 NPALAELNLRSNELGDV---GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp CTTCCEEECTTCCCHHH---HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred CCCcCEEeCCCCcCChH---HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 45666666655443210 1122233344 4666666666654 3456666666666666666665422 22
Q ss_pred HHHh----cCccccEEeCcCCCCc
Q 043825 204 SFFN----YLSNLYTLNMPFSDID 223 (235)
Q Consensus 204 ~i~~----~L~~L~~L~l~~~~l~ 223 (235)
.+.. ..++|++|++++|.+.
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHHhcCCCcceEEECCCCCCC
Confidence 2220 1345666666666544
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.14 E-value=1.8e-06 Score=75.18 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=83.6
Q ss_pred CCCeEEEEEEcCCCCcccccc-c--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-cchhc-CCcc
Q 043825 112 RKNVKRFCALEQQSDFAYLDD-Y--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-YLSEI-ENLS 186 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~-~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i-~~L~ 186 (235)
+..+++|.+..+......... . ++++++|.+.++.........++..+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 346788888887765433333 2 89999999999886521111345678889999999999999863 23333 3344
Q ss_pred ----cCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCcc
Q 043825 187 ----LLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 187 ----~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~ 224 (235)
+|++|++++|.+. .+|..+. ++++|++|++++|.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGD 127 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCch
Confidence 6999999999987 5688888 99999999999997753
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.08 E-value=6.5e-06 Score=69.55 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=60.0
Q ss_pred CCCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCe-EEEeCCccccc-chhcCCcc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRA-LDLGYLVLNQY-LSEIENLS 186 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~-L~l~~~~l~~l-p~~i~~L~ 186 (235)
.+.++++|.+..+.........+ +++|+.|.+.++..... ..+..|.+++.+.. +.+.+|.+..+ |..+..+.
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~---i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV---IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE---ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc---cChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 34567777777776663333333 67777777777664320 11223444444332 33444445444 23345555
Q ss_pred cCcEEecccCCCc-------------------------ccchH-HHhcC-ccccEEeCcCCCCccccHhhc
Q 043825 187 LLRYLKLNIPSLK-------------------------SLPSS-FFNYL-SNLYTLNMPFSDIDHIADEFW 230 (235)
Q Consensus 187 ~Lr~L~l~~~~l~-------------------------~lP~~-i~~~L-~~L~~L~l~~~~l~~lP~~i~ 230 (235)
+|++|++++|.+. .+|.. +. .+ ..|++|++++|.++++|..+.
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST-TSBSSCEEEECCSSCCCEECTTSS
T ss_pred ccccccccccccccCCchhhcccchhhhhhhccccccccccccchh-hcchhhhhhccccccccCCChhhc
Confidence 5555555554444 44432 12 23 246667777777777766543
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.08 E-value=1.1e-06 Score=79.10 Aligned_cols=119 Identities=11% Similarity=0.026 Sum_probs=68.3
Q ss_pred CCeEEEEEEcCCCCccccccc---C-CCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-----cchhcC
Q 043825 113 KNVKRFCALEQQSDFAYLDDY---Y-PHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-----YLSEIE 183 (235)
Q Consensus 113 ~~~r~lsl~~~~~~~~~~~~~---~-~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i~ 183 (235)
..+++|.+..+.........+ + .+|+.|.+.++.... ...+......+++|++|++++|.+.. ++....
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 456777776664432222222 2 337777776654211 00233444567777777777776541 333445
Q ss_pred CcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCccccHhhcccCC
Q 043825 184 NLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDHIADEFWKMNK 234 (235)
Q Consensus 184 ~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 234 (235)
.+++|++|++++|.+. .++..+. ++++|++|++++|.+..+|..+.++++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIAR-NCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHH-HCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHh-hCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 5667777777777654 4444555 677777777777766666665555544
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.05 E-value=2.4e-06 Score=73.17 Aligned_cols=110 Identities=10% Similarity=-0.006 Sum_probs=65.1
Q ss_pred CeEEEEEEcCCCCcccccc------c-CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchh
Q 043825 114 NVKRFCALEQQSDFAYLDD------Y-YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSE 181 (235)
Q Consensus 114 ~~r~lsl~~~~~~~~~~~~------~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~ 181 (235)
++++|.+..+......... . .++|++|.+.++.........+...+...+.|+.|+|++|.+. .++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 4666666666553211111 1 3567777777665532110023344566777777777777765 34556
Q ss_pred cCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCcc
Q 043825 182 IENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 182 i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~ 224 (235)
+....+|++|+|++|.+. .++..+. ..++|++|+|++|.+..
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~-~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAR-EHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHH-HCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHH-hCCCCCEEeccCCCCCH
Confidence 666677777777777765 3445555 66777888887776653
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.99 E-value=2.5e-06 Score=76.65 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=78.1
Q ss_pred CCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccc-----cchhcC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQ-----YLSEIE 183 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i~ 183 (235)
...+++|.+..+......+..+ +++|++|.+.++...... .++..+.++++|++|++++|.+.. ++....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD--GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH--HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH--HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3467888888776543222222 789999988876432100 245566688999999999888652 333344
Q ss_pred CcccCcEEecccCC--Cc--ccchHHHhcCccccEEeCcCC-CCccccHhhcccCC
Q 043825 184 NLSLLRYLKLNIPS--LK--SLPSSFFNYLSNLYTLNMPFS-DIDHIADEFWKMNK 234 (235)
Q Consensus 184 ~L~~Lr~L~l~~~~--l~--~lP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~ 234 (235)
.+++|++|+++++. +. .++.-+. ++++|++|++++| .+..+|..+.++++
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~-~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 236 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVT-RCPNLKSLKLNRAVPLEKLATLLQRAPQ 236 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHH-HCTTCCEEECCTTSCHHHHHHHHHHCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHH-hCCCCcEEecCCCCcHHHHHHHHhcCCc
Confidence 66788999998876 21 2333345 6788999999888 66666666555544
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=1.8e-05 Score=64.59 Aligned_cols=62 Identities=23% Similarity=0.127 Sum_probs=45.2
Q ss_pred hccCccCeEEEeCCcccc---cchhcCCcccCcEEecccCCCcccchHHHhcCc--cccEEeCcCCCCc
Q 043825 160 EMYKLLRALDLGYLVLNQ---YLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLS--NLYTLNMPFSDID 223 (235)
Q Consensus 160 ~~l~~Lr~L~l~~~~l~~---lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~--~L~~L~l~~~~l~ 223 (235)
.+++.|+.|+|++|.+.. +|..+..+.+|++|+|++|.+..+ ..+. .+. +|+.|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~-~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD-KIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG-GGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh-hcccCCcceEEccCCcCc
Confidence 567788888888888764 345666788888888888887766 3444 555 8888888888554
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=1.4e-05 Score=65.23 Aligned_cols=80 Identities=25% Similarity=0.202 Sum_probs=63.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcc--cCcEEecccCCCc-ccc-------h
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLS--LLRYLKLNIPSLK-SLP-------S 203 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~--~Lr~L~l~~~~l~-~lP-------~ 203 (235)
+++|++|.+.++...... .++..+..+++|+.|+|++|.+..+ ..+..+. +|++|+|++|.+. .+| .
T Consensus 169 l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 789999999999987643 4556788999999999999999865 3344454 9999999999976 354 2
Q ss_pred HHHhcCccccEEeC
Q 043825 204 SFFNYLSNLYTLNM 217 (235)
Q Consensus 204 ~i~~~L~~L~~L~l 217 (235)
.+. .+++|+.||=
T Consensus 246 il~-~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRE-RFPKLLRLDG 258 (267)
T ss_dssp HHH-HCTTCCEESS
T ss_pred HHH-HCcccCeECC
Confidence 356 8999999973
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.91 E-value=4.5e-06 Score=71.40 Aligned_cols=112 Identities=15% Similarity=0.067 Sum_probs=81.4
Q ss_pred CCCeEEEEEEcCCCCccccccc---CCCcceEEEecCCCCCCCCcchhHHh-hccCccCeEEEeCCccc-----ccchhc
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKIC-EMYKLLRALDLGYLVLN-----QYLSEI 182 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~l~-----~lp~~i 182 (235)
...++.|.+..+.........+ +++++.|.+.++.........+...+ ...+.|+.|+|++|.+. .++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3578899888887653222223 67899999998877531100122222 24688999999999986 366677
Q ss_pred CCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCcc
Q 043825 183 ENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 183 ~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~ 224 (235)
....+|++|+|++|.+. .++..+. ..++|++|+|++|.+..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCH
Confidence 88899999999999886 3456677 78899999999998764
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=1.2e-05 Score=61.92 Aligned_cols=112 Identities=7% Similarity=0.116 Sum_probs=80.9
Q ss_pred CCCCeEEEEEEcC-CCCcc----ccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----cc
Q 043825 111 SRKNVKRFCALEQ-QSDFA----YLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QY 178 (235)
Q Consensus 111 ~~~~~r~lsl~~~-~~~~~----~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~l 178 (235)
....+++|.+..+ ..... ....+ .+.|+.|.+.++.........+...+...+.|+.|+|++|.+. .+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4556888888876 55421 11112 6889999998887653111134456677789999999999986 36
Q ss_pred chhcCCcccCcEEec--ccCCCc-----ccchHHHhcCccccEEeCcCCCCc
Q 043825 179 LSEIENLSLLRYLKL--NIPSLK-----SLPSSFFNYLSNLYTLNMPFSDID 223 (235)
Q Consensus 179 p~~i~~L~~Lr~L~l--~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~ 223 (235)
...+.....|++|++ ++|.+. .+...+. ..++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence 777888889999999 778876 3556666 7789999999999664
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.71 E-value=1.5e-05 Score=61.27 Aligned_cols=90 Identities=9% Similarity=0.030 Sum_probs=68.4
Q ss_pred CCCcceEEEecC-CCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCcc-----cc
Q 043825 134 YPHLHSLLYFTS-ESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLKS-----LP 202 (235)
Q Consensus 134 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~~-----lP 202 (235)
.+.+++|.+.++ .........+...+...+.|++|+|++|.+. .+...+.....|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 788999999887 5542111134456777889999999999986 355666667889999999998873 56
Q ss_pred hHHHhcCccccEEeC--cCCCCcc
Q 043825 203 SSFFNYLSNLYTLNM--PFSDIDH 224 (235)
Q Consensus 203 ~~i~~~L~~L~~L~l--~~~~l~~ 224 (235)
..+. ..++|++|+| ++|.+..
T Consensus 115 ~~L~-~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 115 EALQ-SNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HGGG-GCSSCCEEECCCCSSCCCH
T ss_pred HHHH-hCCCceEEEecCCCCCCCH
Confidence 6777 7889999999 7787653
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.65 E-value=4.1e-05 Score=68.70 Aligned_cols=88 Identities=14% Similarity=0.241 Sum_probs=44.2
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccchhcCCcccCcEEecc-------------------
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLSEIENLSLLRYLKLN------------------- 194 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~Lr~L~l~------------------- 194 (235)
+++|++|.+..+.........++..+.++++|+.|++++|.+..+|..+..+++|++|+++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 4555555554444321111133444555666666666666555444444444444444443
Q ss_pred --------cCCCcccchHHHhcCccccEEeCcCCCC
Q 043825 195 --------IPSLKSLPSSFFNYLSNLYTLNMPFSDI 222 (235)
Q Consensus 195 --------~~~l~~lP~~i~~~L~~L~~L~l~~~~l 222 (235)
++....+|..+. .+++|++|++++|.+
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFP-FAAQIRKLDLLYALL 305 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGG-GGGGCCEEEETTCCC
T ss_pred cccccCccccchhHHHHHHh-hcCCCcEEecCCCcC
Confidence 222334555555 666677777766643
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=7.2e-05 Score=62.47 Aligned_cols=96 Identities=20% Similarity=0.057 Sum_probs=74.7
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCc-EEecccCCCcccchHHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLR-YLKLNIPSLKSLPSSFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr-~L~l~~~~l~~lP~~i~~~L~~ 211 (235)
+++|+++.+.++.... .....|..+.+|+.+++..+ +..+++ .+..+.+|+ .+.+.. .++.+++....++.+
T Consensus 225 ~~~L~~l~L~~n~i~~----I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT----IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCE----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcce----ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 6788999888766553 34567899999999999987 776654 578899999 999988 788887544338999
Q ss_pred ccEEeCcCCCCccccH-hhcccCCC
Q 043825 212 LYTLNMPFSDIDHIAD-EFWKMNKL 235 (235)
Q Consensus 212 L~~L~l~~~~l~~lP~-~i~~L~~L 235 (235)
|+.++++++.+..++. .+..+++|
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCC
T ss_pred CCEEEeCCCccCccchhhhcCCcch
Confidence 9999999888988876 45555544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.52 E-value=0.00036 Score=59.39 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=27.0
Q ss_pred cCccCeEEEeCCccc-ccchhc---CCcccCcEEecccCCCcc-----cchHHHhcCccccEEeCcCCCC
Q 043825 162 YKLLRALDLGYLVLN-QYLSEI---ENLSLLRYLKLNIPSLKS-----LPSSFFNYLSNLYTLNMPFSDI 222 (235)
Q Consensus 162 l~~Lr~L~l~~~~l~-~lp~~i---~~L~~Lr~L~l~~~~l~~-----lP~~i~~~L~~L~~L~l~~~~l 222 (235)
+++|++|+|.+|.+. ..+..+ ..+++|++|+|+.|.+.. ++..+. ++++|+.|++++|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD-KIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH-HHTTCSEEECCSBBC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc-cCCcceEEECCCCcC
Confidence 445555555554443 111111 234455555555554442 333334 455555555555533
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.49 E-value=0.00011 Score=62.67 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=70.6
Q ss_pred CCCCeEEEEEEcCCCCccccccc-CCCcceEEEecCCCCCCCCcchhHHhh--ccCccCeEEEeCC--c------ccccc
Q 043825 111 SRKNVKRFCALEQQSDFAYLDDY-YPHLHSLLYFTSESDHLDPIDWQKICE--MYKLLRALDLGYL--V------LNQYL 179 (235)
Q Consensus 111 ~~~~~r~lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~--~l~~Lr~L~l~~~--~------l~~lp 179 (235)
....+++|.+.++... ..+.. .++|+.|.+..+.... .....+. .+++|+.|+|+.+ . +..+.
T Consensus 170 ~~P~L~~L~L~g~~~l--~l~~~~~~~L~~L~L~~~~l~~----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL--SIGKKPRPNLKSLEIISGGLPD----SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTC--BCCSCBCTTCSEEEEECSBCCH----HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCc--eeccccCCCCcEEEEecCCCCh----HHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3468999999876321 22224 8899999998766532 1222333 7899999999632 1 22222
Q ss_pred hhc--CCcccCcEEecccCCCcc-cchHHHh--cCccccEEeCcCCCCcc
Q 043825 180 SEI--ENLSLLRYLKLNIPSLKS-LPSSFFN--YLSNLYTLNMPFSDIDH 224 (235)
Q Consensus 180 ~~i--~~L~~Lr~L~l~~~~l~~-lP~~i~~--~L~~L~~L~l~~~~l~~ 224 (235)
..+ ..+++|++|++++|.+.. .+..+.. .+++|++|+|+.|.+..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 223 357899999999988752 3333430 47899999999997764
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.47 E-value=1.2e-05 Score=72.06 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=59.6
Q ss_pred CCCeEEEEEEcCC-CCccccccc---CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc--cc--ccchhcC
Q 043825 112 RKNVKRFCALEQQ-SDFAYLDDY---YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV--LN--QYLSEIE 183 (235)
Q Consensus 112 ~~~~r~lsl~~~~-~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--l~--~lp~~i~ 183 (235)
..++++|.+..+. ......... +++|+.|.+.++.........+......+++|+.|+++++. +. .++.-+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 3467777777652 221111112 77788887776653221111233333456677777777765 22 2333334
Q ss_pred CcccCcEEecccC-CCcccchHHHhcCccccEEeCcCC
Q 043825 184 NLSLLRYLKLNIP-SLKSLPSSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 184 ~L~~Lr~L~l~~~-~l~~lP~~i~~~L~~L~~L~l~~~ 220 (235)
.+++|++|++++| .+..+|..+. ++++|+.|++..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~-~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQ-RAPQLEELGTGGY 245 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHH-HCTTCSEEECSBC
T ss_pred hCCCCcEEecCCCCcHHHHHHHHh-cCCcceEcccccc
Confidence 4577777777776 3556666666 6777777765433
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.40 E-value=0.0002 Score=54.55 Aligned_cols=86 Identities=9% Similarity=-0.028 Sum_probs=57.3
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCc-cc-ccchhcCCc----ccCcEEecccCC-Cccc-chHH
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLV-LN-QYLSEIENL----SLLRYLKLNIPS-LKSL-PSSF 205 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~-~lp~~i~~L----~~Lr~L~l~~~~-l~~l-P~~i 205 (235)
..+|+.|.+.++.... .--..+..+++|+.|+|++|. ++ .--..+..+ .+|++|++++|. ++.- -..+
T Consensus 60 ~~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred CceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 4567888888776543 122345788888999998886 65 223445554 368899998874 6521 1345
Q ss_pred HhcCccccEEeCcCC-CCcc
Q 043825 206 FNYLSNLYTLNMPFS-DIDH 224 (235)
Q Consensus 206 ~~~L~~L~~L~l~~~-~l~~ 224 (235)
. ++++|++|++++| .++.
T Consensus 136 ~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 H-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp G-GCTTCCEEEEESCTTCCC
T ss_pred h-cCCCCCEEECCCCCCCCc
Confidence 6 7888999999888 5553
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.90 E-value=0.0012 Score=47.54 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=24.4
Q ss_pred eEEEeCCccc--ccchhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC
Q 043825 167 ALDLGYLVLN--QYLSEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 167 ~L~l~~~~l~--~lp~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~ 220 (235)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+|......+.+|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444 4444322 23455555555555555443224555555555554
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.57 E-value=0.0028 Score=52.68 Aligned_cols=100 Identities=11% Similarity=-0.010 Sum_probs=74.7
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccC-eEEEeCCcccccc-hhcCCccc
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLR-ALDLGYLVLNQYL-SEIENLSL 187 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr-~L~l~~~~l~~lp-~~i~~L~~ 187 (235)
...++.+.+..+.........+ +++|+++.+.++ ... .....|..+..|+ .+++.. .++.++ ..+..+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~----I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT----IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE----ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce----ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 4566777776655543223333 889999988775 322 4457899999999 999998 677664 67889999
Q ss_pred CcEEecccCCCcccchHHHhcCccccEEeC
Q 043825 188 LRYLKLNIPSLKSLPSSFFNYLSNLYTLNM 217 (235)
Q Consensus 188 Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l 217 (235)
|+.++++++.+..++.....++.+|+++..
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999999998854438889988753
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.07 E-value=0.02 Score=43.45 Aligned_cols=86 Identities=9% Similarity=0.028 Sum_probs=61.9
Q ss_pred CCCeEEEEEEcCCCCccccccc--CCCcceEEEecCCCCCCCCcchhHHhhcc----CccCeEEEeCCc-cc-ccchhcC
Q 043825 112 RKNVKRFCALEQQSDFAYLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMY----KLLRALDLGYLV-LN-QYLSEIE 183 (235)
Q Consensus 112 ~~~~r~lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l----~~Lr~L~l~~~~-l~-~lp~~i~ 183 (235)
.-.+.+|.+..+.....-+..+ +++|++|.+.++..... .-...+..+ ++|+.|++++|. ++ .=-..+.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 4468999999887664444444 99999999999875321 122334543 479999999986 76 2234577
Q ss_pred CcccCcEEecccCC-Ccc
Q 043825 184 NLSLLRYLKLNIPS-LKS 200 (235)
Q Consensus 184 ~L~~Lr~L~l~~~~-l~~ 200 (235)
.+++|++|++++|. ++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 89999999999985 654
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.85 E-value=0.13 Score=43.93 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=54.1
Q ss_pred CCCcceEEEecCCCCCCC-CcchhHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCcc
Q 043825 134 YPHLHSLLYFTSESDHLD-PIDWQKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSN 211 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~ 211 (235)
+++|+++.+.++...... .......|..+++|+.+.+.. .++.++ ..+..+.+|+.+.+..+ +..++.....++ +
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 667777777665442100 002345677777777777773 355553 35666777888877543 666655443256 8
Q ss_pred ccEEeCcCCCCcccc
Q 043825 212 LYTLNMPFSDIDHIA 226 (235)
Q Consensus 212 L~~L~l~~~~l~~lP 226 (235)
|+.+.+.+|.+..++
T Consensus 347 L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVF 361 (401)
T ss_dssp CCEEEECCSSCCBCC
T ss_pred CCEEEEcCCCCcccc
Confidence 888888777555544
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.69 E-value=0.12 Score=44.30 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=24.6
Q ss_pred hcCCcccCcEEecccCCCc-----ccchHHHhcCccccEEeCcCCCCcccc
Q 043825 181 EIENLSLLRYLKLNIPSLK-----SLPSSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 181 ~i~~L~~Lr~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
.+..+.+|+.+.+.++.+. .++......+.+|+.+.+.. .+..++
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 3455666666666655443 45443322666677776663 355554
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.98 E-value=0.047 Score=42.16 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCCeEEEEEEcC-CCCcc----ccccc--CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccc
Q 043825 112 RKNVKRFCALEQ-QSDFA----YLDDY--YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYL 179 (235)
Q Consensus 112 ~~~~r~lsl~~~-~~~~~----~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp 179 (235)
...+++|.+..+ .+... ....+ .+.|+.|.+.++.........+...+..=+.|+.|+|++|.+. .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 445777777653 33311 11222 7788899888877753211145566777788999999999876 455
Q ss_pred hhcCCcccCcEEecccCC---Cc-----ccchHHHhcCccccEEeCcCCCC
Q 043825 180 SEIENLSLLRYLKLNIPS---LK-----SLPSSFFNYLSNLYTLNMPFSDI 222 (235)
Q Consensus 180 ~~i~~L~~Lr~L~l~~~~---l~-----~lP~~i~~~L~~L~~L~l~~~~l 222 (235)
+.+..=..|+.|+|+++. +. .+-..+. .=+.|+.|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCCc
Confidence 556666679999998653 33 2334455 557888999887743
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.80 E-value=0.086 Score=37.66 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=24.9
Q ss_pred ccCeEEEeCCcccccchh-cCCcccCcEEecccCCC
Q 043825 164 LLRALDLGYLVLNQYLSE-IENLSLLRYLKLNIPSL 198 (235)
Q Consensus 164 ~Lr~L~l~~~~l~~lp~~-i~~L~~Lr~L~l~~~~l 198 (235)
+|+.|+|++|.++.+|.. +..+.+|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 477778888877777654 46677778888877754
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.54 E-value=0.19 Score=38.74 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred CCCcceEEEecC-CCCCCCCcchhHHhhccCccCeEEEeCCccc-----ccchhcCCcccCcEEecccCCCc-----ccc
Q 043825 134 YPHLHSLLYFTS-ESDHLDPIDWQKICEMYKLLRALDLGYLVLN-----QYLSEIENLSLLRYLKLNIPSLK-----SLP 202 (235)
Q Consensus 134 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~l~-----~lP 202 (235)
.+.|+.|.+.++ .........+-..+..-..|+.|+|++|.+. .+-+.+..=+.|+.|+|++|.|. .|-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 678899988764 3321110124455677788999999999986 44555555678999999999886 333
Q ss_pred hHHHhcCccccEEeCcCC
Q 043825 203 SSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 203 ~~i~~~L~~L~~L~l~~~ 220 (235)
+.+. .-..|+.|+|++|
T Consensus 120 ~aL~-~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTL-VTQSIVEFKADNQ 136 (197)
T ss_dssp HHTT-TTCCCSEEECCCC
T ss_pred HHHh-hCCceeEEECCCC
Confidence 4444 4567999999865
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.02 E-value=1.3 Score=37.01 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCccccEEeC
Q 043825 157 KICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNM 217 (235)
Q Consensus 157 ~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l 217 (235)
..|..+.+|+.+.+.++.++.++ ..+.++.+|+.+.+..+ ++.++.....++.+|+.+.+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 35666667777777666666554 34566667777777543 55555433215566666655
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.52 E-value=0.53 Score=39.74 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=39.5
Q ss_pred hHHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC
Q 043825 156 QKICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 156 ~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~ 220 (235)
...|..+.+|+.+++..+ ++.+. ..+..+.+|+.+.+..+ ++.++.....++.+|+.+++..+
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 345667777777777543 44443 35667777777777654 66665543326677777777554
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.36 E-value=2.1 Score=35.63 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=57.8
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L 212 (235)
+..|+++.+...-. . .-...|..+..|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++.....++.+|
T Consensus 239 ~~~L~~i~lp~~v~-~----I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 239 MKALDEIAIPKNVT-S----IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp CSSCCEEEECTTCC-E----ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred CccceEEEcCCCcc-E----eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 56777777754321 1 23456788888988888654 554543 56778899999998888888876554377888
Q ss_pred cEEeCcCCCCccc
Q 043825 213 YTLNMPFSDIDHI 225 (235)
Q Consensus 213 ~~L~l~~~~l~~l 225 (235)
+.+.+..+ ++.+
T Consensus 313 ~~i~lp~~-l~~I 324 (379)
T 4h09_A 313 SSVTLPTA-LKTI 324 (379)
T ss_dssp CEEECCTT-CCEE
T ss_pred CEEEcCcc-ccEE
Confidence 88887543 4444
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=81.20 E-value=3.3 Score=34.73 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=36.5
Q ss_pred HHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCC
Q 043825 157 KICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFS 220 (235)
Q Consensus 157 ~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~ 220 (235)
..|..+.+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++.....++.+|+.+++.++
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 45566666666666543 33332 34566677777777543 66665543326777777777654
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=81.17 E-value=2.7 Score=35.30 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=54.3
Q ss_pred CCCcceEEEecCCCCCCCCcchhHHhhccCccCeEEEeCCcccccch-hcCCcccCcEEecccCCCcccchHHHhcCccc
Q 043825 134 YPHLHSLLYFTSESDHLDPIDWQKICEMYKLLRALDLGYLVLNQYLS-EIENLSLLRYLKLNIPSLKSLPSSFFNYLSNL 212 (235)
Q Consensus 134 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L 212 (235)
+..|+++.+.+.... .-...|.++..|+.+.+.. .+..+++ .+..+.+|+.+.+..+ ++.+......++.+|
T Consensus 264 c~~L~~i~lp~~~~~-----I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-----IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp CSSCCEEECCTTCCE-----ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred cccccEEecccccce-----ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 556666665433221 2345667778888877753 3555543 4566778888888653 666655433267788
Q ss_pred cEEeCcCCCCccccH-hhcccCC
Q 043825 213 YTLNMPFSDIDHIAD-EFWKMNK 234 (235)
Q Consensus 213 ~~L~l~~~~l~~lP~-~i~~L~~ 234 (235)
+.+.+..+ +..++. .+..+.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTT
T ss_pred CEEEECcc-cCEEhHhHhhCCCC
Confidence 88877543 555543 3334433
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=68.62 E-value=7.2 Score=32.59 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=43.2
Q ss_pred HHhhccCccCeEEEeCCcccccc-hhcCCcccCcEEecccCCCcccchHHHhcCccccEEeCcCCCCcccc
Q 043825 157 KICEMYKLLRALDLGYLVLNQYL-SEIENLSLLRYLKLNIPSLKSLPSSFFNYLSNLYTLNMPFSDIDHIA 226 (235)
Q Consensus 157 ~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~Lr~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP 226 (235)
..|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+..+ ++.++.....++.+|+.+.+..+ +..++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 34566667777776543 44443 34677888999988653 77776544327888998888654 44443
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=36.91 E-value=3.2 Score=33.58 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=15.4
Q ss_pred HHhcCCCC----C-ChHHHHHHHHH-HHHhCCceee
Q 043825 39 WIAEGFIP----D-NSEATAEKYLE-QLINRGFVEV 68 (235)
Q Consensus 39 WiaeG~i~----g-~~e~~~~~~~~-~Li~r~ll~~ 68 (235)
-+..|||. | .+.+.|.+|++ ++++|++||+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34566665 3 56677777776 7777777764
No 170
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=26.98 E-value=52 Score=21.32 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=27.8
Q ss_pred ChHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeee
Q 043825 31 STRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVK 69 (235)
Q Consensus 31 ~~~~Li~~WiaeG~i~g~~e~~~~~~~~~Li~r~ll~~~ 69 (235)
.+++|+-+|.|+-+ |-..+.++.|..+++..-|-++.
T Consensus 9 RRNklLglWAAe~l--Gltg~~aeaYa~~vv~adfee~g 45 (85)
T 2kzc_A 9 RRNKLMGLWVAEVL--GKSGDEANAYAAEVVKADFEEAG 45 (85)
T ss_dssp HHHHHHHHHHHHHH--TCCHHHHHHHHHHGGGSSSSSSS
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccCC
Confidence 57899999999832 22346689999999998776653
Done!