BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043826
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
I HDW+DEHCLK LKNCY+++P++GKVIV E +LP P++S+ +K H DV+M+ P
Sbjct: 267 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPG 326
Query: 68 GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
GKERT+ EF LA GAGF G N ++MEF K
Sbjct: 327 GKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 115 bits (287), Expect = 9e-27, Method: Composition-based stats.
Identities = 52/97 (53%), Positives = 62/97 (63%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
I HDW+DEHCLKLLKNCY ++P+ GKVIV E +LP P+ SI +K H D LM+ P
Sbjct: 270 ICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG 329
Query: 68 GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
GKERT EF LA +GF G N +VMEF K
Sbjct: 330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 108 bits (270), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 62/97 (63%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
ILHDW+D+HC LLKNCY ++P GKV++V+ +LP P + S+ FH D++M+ P
Sbjct: 268 ILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG 327
Query: 68 GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
G+ER EF LA GAGF+G+ N W +EF K
Sbjct: 328 GRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRP 66
+ H+W+DE C++ L NC+K++ +GKVI+VE +LPE PNTS ESK D LM I
Sbjct: 275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV- 333
Query: 67 DGKERTRHEFMTLATGAGFSGMSCE-RAIGNLWVMEFYK 104
G+ERT ++ L+ +GFS RA +L VMEFYK
Sbjct: 334 GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 4/99 (4%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
+ H+W+DE C++ L NC+K++ +GKVI+VE +LPE PNTS ESK D L I
Sbjct: 276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLXFIT-VG 334
Query: 68 GKERTRHEFMTLATGAGFSG--MSCERAIGNLWVMEFYK 104
G+ERT ++ L+ +GFS ++C RA +L V EFYK
Sbjct: 335 GRERTEKQYEKLSKLSGFSKFQVAC-RAFNSLGVXEFYK 372
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIP---EDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
+LHDWNDE LK+LKN ++I +DGKVI++++ + E + ++ +D++M+
Sbjct: 256 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 315
Query: 65 RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
GKERT+ E+ L AGFS G ++E Y
Sbjct: 316 FL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 353
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIP---EDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
+LHDWNDE LK+LKN ++I +DGKVI++++ + E + ++ +D++M+
Sbjct: 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 319
Query: 65 RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
GKERT+ E+ L AGFS G ++E Y
Sbjct: 320 FL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIP---EDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
+LHDWNDE LK+LKN ++I +DGKVI++++ + E + ++ +D++M+
Sbjct: 259 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 318
Query: 65 RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
GKERT+ E+ L AGFS G ++E Y
Sbjct: 319 FL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 356
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 7 TILHDWNDEHCLKLLKNCYKSIPED---GKVIVVELMLPEVPNTSIESKSNFHFDVLMMI 63
+LHDW D+ C+K+LK C +++ D GKVIV+++++ E + + ++ +V I
Sbjct: 259 AVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNV--TI 316
Query: 64 QRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
+GKER E+ L AGF G + ++E Y
Sbjct: 317 SCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
ILH+W DE +++L NC + P G+V+V++ ++PE N + +SK D + R
Sbjct: 256 ILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE-GNDAHQSKEX---DFXXLAAR-T 310
Query: 68 GKERTRHEFMTLATGAGFSGMSCERAIG 95
G+ERT E L T A G+ +R +G
Sbjct: 311 GQERTAAELEPLFTAA---GLRLDRVVG 335
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPED---GKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
ILH+W D+ CL++LK C +++ D GKV ++++++ + + + ++ DV M
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL 314
Query: 65 RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
+GKER E+ L AGF G L ++E Y
Sbjct: 315 --NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPED---GKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
ILH+W D+ CL++LK C +++ D GKV +++ ++ + + + ++ DV
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACL 314
Query: 65 RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
+GKER E+ L AGF G L ++E Y
Sbjct: 315 --NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
+LHDW D C LL+ Y + G ++V+E +L E + ++ L M+ + +
Sbjct: 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQ----LYSLNMLVQTE 308
Query: 68 GKERTRHEFMTLATGAGF 85
G+ERT + L + AGF
Sbjct: 309 GQERTPTHYHMLLSSAGF 326
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESK-SNFHFDVLM---MI 63
+L +W+DE L +L+ C +++ G+++V++ +E ++ F L+ M+
Sbjct: 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLD-------RADVEGDGADRFFSTLLDLRML 309
Query: 64 QRPDGKERTRHEFMTLATGAGFSGMSCERAIGN 96
G+ RTR E + LA AG + ++ ER G+
Sbjct: 310 TFMGGRVRTRDEVVDLAGSAGLA-LASERTSGS 341
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
+LHDW+D+ +++L+ + D +++V++ ++ E P S +++
Sbjct: 277 VLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLFVDL------LLLVLVG 330
Query: 68 GKERTRHEFMTLATGAGFSGMSCERAI 94
G ER+ EF L SG+ ER++
Sbjct: 331 GAERSESEFAALLEK---SGLRVERSL 354
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELML-PEVPNTSIESKSNFHFDVLMMIQRP 66
+LHDW+D + +L+ C ++ G V+V+E + E T ++ L M+
Sbjct: 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMD---------LRMLTYF 294
Query: 67 DGKERTRHEFMTLATGAGFS 86
GKER+ E LA AG +
Sbjct: 295 GGKERSLAELGELAAQAGLA 314
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQR-- 65
+L +W+DE L +L+ C +++ G+++V++ +E F ++ R
Sbjct: 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLD-------RADVEGDGADRFFSTLLDLRXL 309
Query: 66 --PDGKERTRHEFMTLATGAGFSGMSCERAIGN 96
G+ RTR E + LA AG + ++ ER G+
Sbjct: 310 TFXGGRVRTRDEVVDLAGSAGLA-LASERTSGS 341
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
I+ D ++ L+LL NC +++ DG+V+V+E + + S S + +DV + +
Sbjct: 242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI----SASEPSPMSVLWDVHLFMACA- 296
Query: 68 GKERTRHEFMTLATGAGFS 86
G+ RT E + L GF+
Sbjct: 297 GRHRTTEEVVDLLGRGGFA 315
>pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
pdb|2R3S|B Chain B, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
Length = 335
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTS-IESKSNFHFDVLMMIQRPD 67
LH ++ C +LL+ ++ +GKVIV + +PN+ I F ++ + P+
Sbjct: 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDF----IPNSDRITPPDAAAFSLVXLATTPN 297
Query: 68 GKERTRHEFMTLATGAGFS 86
G T E+ + + AGFS
Sbjct: 298 GDAYTFAEYESXFSNAGFS 316
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIE 50
EH + + CY P++ +++V +L E+P+ S++
Sbjct: 138 EHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 173
>pdb|3HV9|A Chain A, Crystal Structure Of Fimx Eal Domain From Pseudomonas
Aeruginosa
Length = 265
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 45 PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86
P S+ S+ +++VL+ + P G+E EF+ A AG +
Sbjct: 36 PVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLA 77
>pdb|4AFY|A Chain A, Crystal Structure Of The Fimx Eal Domain In Complex With
Reaction Product Pgpg
pdb|4AFY|B Chain B, Crystal Structure Of The Fimx Eal Domain In Complex With
Reaction Product Pgpg
pdb|4AG0|A Chain A, Crystal Structure Of Fimx Eal Domain
pdb|4AG0|B Chain B, Crystal Structure Of Fimx Eal Domain
Length = 274
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 45 PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86
P S+ S+ +++VL+ + P G+E EF+ A AG +
Sbjct: 45 PVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLA 86
>pdb|3HV8|A Chain A, Crystal Structure Of Fimx Eal Domain From Pseudomonas
Aeruginosa Bound To C-Di-Gmp
Length = 268
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 45 PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86
P S+ S+ +++VL+ + P G+E EF+ A AG +
Sbjct: 39 PVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLA 80
>pdb|4J40|A Chain A, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
pdb|4J40|B Chain B, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
Length = 437
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 45 PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86
P S+ S+ +++VL+ + P G+E EF+ A AG +
Sbjct: 208 PVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLA 249
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDV--LMMIQR 65
+L +W D +++L C +++ G++++ E + E+ N F L M+
Sbjct: 258 VLLNWPDHDAVRILTRCAEALEPGGRILIHE------RDDLHENSFNEQFTELDLRMLVF 311
Query: 66 PDGKERTRHEFMTLATGAGF 85
G RTR ++ LA AG
Sbjct: 312 LGGALRTREKWDGLAASAGL 331
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 20 LLKNCYKSIPEDGKVI--------VVELMLPEVPNTSIES 51
+ NCYK P D +V+ V EL ++P+ IES
Sbjct: 87 MFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDEPIES 126
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 27 SIPEDGKVIVV-------ELMLPEVPNTSIESKSNF 55
SIP+DGK+ + E+ LP + +E K NF
Sbjct: 91 SIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF 126
>pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|B Chain B, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|C Chain C, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|D Chain D, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|E Chain E, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|F Chain F, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|G Chain G, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|H Chain H, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|I Chain I, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q4D|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|B Chain B, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|C Chain C, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|D Chain D, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|E Chain E, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|F Chain F, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|G Chain G, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|H Chain H, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|I Chain I, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
Length = 368
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 5 TLTILHDWNDEHCLK-LLKNCYKSIPEDGKVIVVELMLPE 43
TLT+L +N +HC + + +N Y ++P+ + + +M E
Sbjct: 203 TLTLLEPYNIQHCEEPVSRNLYTALPKIRQACRIPIMADE 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,263,357
Number of Sequences: 62578
Number of extensions: 114712
Number of successful extensions: 281
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 29
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)