Query 043826
Match_columns 104
No_of_seqs 138 out of 1009
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.9 5.8E-24 1.2E-28 148.3 8.9 103 2-104 239-342 (342)
2 PF00891 Methyltransf_2: O-met 99.9 2.7E-22 5.8E-27 135.4 5.6 79 2-81 161-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.6 2.5E-15 5.4E-20 104.7 8.3 87 2-91 218-305 (306)
4 TIGR00740 methyltransferase, p 99.0 1.1E-10 2.3E-15 78.8 2.5 95 4-103 127-238 (239)
5 PF05891 Methyltransf_PK: AdoM 99.0 7.8E-10 1.7E-14 73.7 5.8 77 3-93 126-202 (218)
6 PLN02233 ubiquinone biosynthes 98.9 1.9E-08 4.1E-13 69.0 8.4 95 4-102 150-259 (261)
7 PLN02232 ubiquinone biosynthes 98.8 1.2E-08 2.7E-13 65.2 6.6 95 4-102 49-158 (160)
8 PTZ00098 phosphoethanolamine N 98.8 5E-08 1.1E-12 67.0 9.2 82 5-94 123-204 (263)
9 PRK00216 ubiE ubiquinone/menaq 98.8 8.8E-08 1.9E-12 63.9 9.2 96 4-104 126-238 (239)
10 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 2E-07 4.2E-12 61.6 9.6 96 4-104 111-223 (223)
11 PLN02490 MPBQ/MSBQ methyltrans 98.7 1.4E-07 3E-12 67.1 8.9 77 3-94 182-258 (340)
12 PRK15451 tRNA cmo(5)U34 methyl 98.7 4.3E-08 9.3E-13 66.7 5.9 86 4-90 130-228 (247)
13 PF01209 Ubie_methyltran: ubiE 98.7 4.6E-09 1E-13 71.1 1.0 96 3-104 120-233 (233)
14 COG2226 UbiE Methylase involve 98.7 3.5E-07 7.5E-12 62.1 9.6 98 2-104 122-237 (238)
15 TIGR02752 MenG_heptapren 2-hep 98.7 2E-07 4.4E-12 62.3 8.0 94 5-104 120-231 (231)
16 PF13489 Methyltransf_23: Meth 98.6 8.8E-08 1.9E-12 60.2 5.6 77 4-89 83-160 (161)
17 PRK11873 arsM arsenite S-adeno 98.6 4.1E-07 9E-12 62.4 8.9 79 5-92 152-230 (272)
18 TIGR00452 methyltransferase, p 98.6 4.5E-07 9.8E-12 63.9 8.8 82 4-93 193-274 (314)
19 PRK15068 tRNA mo(5)U34 methylt 98.6 6.4E-07 1.4E-11 63.3 9.5 81 4-93 194-275 (322)
20 PF06080 DUF938: Protein of un 98.6 7.1E-07 1.5E-11 59.3 9.0 98 4-104 107-204 (204)
21 PLN02336 phosphoethanolamine N 98.5 6.5E-07 1.4E-11 65.9 8.1 79 4-93 337-415 (475)
22 PLN02244 tocopherol O-methyltr 98.4 3.8E-06 8.3E-11 59.7 9.8 88 4-94 191-280 (340)
23 KOG1540 Ubiquinone biosynthesi 98.3 2.1E-06 4.5E-11 58.8 6.0 82 2-89 180-278 (296)
24 PRK14103 trans-aconitate 2-met 98.3 4.3E-06 9.3E-11 57.0 7.0 85 3-89 93-181 (255)
25 PRK04266 fibrillarin; Provisio 98.2 7.2E-06 1.6E-10 55.4 7.3 76 7-103 144-224 (226)
26 TIGR03438 probable methyltrans 98.2 9.8E-06 2.1E-10 56.7 8.2 35 2-36 141-175 (301)
27 PLN02396 hexaprenyldihydroxybe 98.2 3.9E-06 8.5E-11 59.4 5.9 86 3-93 202-290 (322)
28 smart00828 PKS_MT Methyltransf 98.2 1E-05 2.3E-10 53.8 7.6 74 5-94 73-146 (224)
29 PRK11036 putative S-adenosyl-L 98.2 3.7E-06 8E-11 57.3 5.1 91 3-96 116-211 (255)
30 PF04672 Methyltransf_19: S-ad 98.2 1.3E-06 2.9E-11 60.1 2.5 79 3-89 154-233 (267)
31 PRK08317 hypothetical protein; 98.1 2.4E-05 5.2E-10 51.9 8.3 85 4-93 92-177 (241)
32 PLN02336 phosphoethanolamine N 98.0 2.3E-05 5E-10 57.7 7.0 72 4-89 108-179 (475)
33 PRK11207 tellurite resistance 98.0 6.8E-05 1.5E-09 49.4 8.4 70 4-91 100-169 (197)
34 TIGR00477 tehB tellurite resis 97.9 0.00016 3.5E-09 47.5 8.6 70 4-91 99-168 (195)
35 PRK05134 bifunctional 3-demeth 97.8 7.8E-05 1.7E-09 49.9 6.3 84 3-92 118-205 (233)
36 PF02353 CMAS: Mycolic acid cy 97.8 3.1E-05 6.7E-10 53.7 4.1 85 7-94 135-219 (273)
37 TIGR01983 UbiG ubiquinone bios 97.8 7.9E-05 1.7E-09 49.5 5.7 82 4-93 117-204 (224)
38 PF08003 Methyltransf_9: Prote 97.6 0.0005 1.1E-08 48.4 7.3 79 4-93 187-268 (315)
39 smart00138 MeTrc Methyltransfe 97.5 0.00012 2.7E-09 50.4 4.1 37 3-39 207-243 (264)
40 PRK12335 tellurite resistance 97.5 0.001 2.2E-08 46.3 8.5 69 5-91 190-258 (287)
41 KOG2361 Predicted methyltransf 97.5 0.00026 5.6E-09 48.3 5.3 82 7-90 152-235 (264)
42 PRK06922 hypothetical protein; 97.5 0.0002 4.3E-09 55.0 4.7 43 2-44 490-543 (677)
43 KOG4300 Predicted methyltransf 97.4 0.00075 1.6E-08 45.3 6.3 76 15-95 159-235 (252)
44 PF08241 Methyltransf_11: Meth 97.4 0.00011 2.4E-09 41.8 2.1 32 3-36 64-95 (95)
45 PRK11705 cyclopropane fatty ac 97.3 0.0014 3E-08 47.5 7.6 80 6-94 235-314 (383)
46 COG2230 Cfa Cyclopropane fatty 97.3 0.00078 1.7E-08 47.0 5.9 80 8-94 146-225 (283)
47 PRK06202 hypothetical protein; 97.3 0.0013 2.8E-08 44.2 6.8 83 3-93 133-223 (232)
48 PRK07580 Mg-protoporphyrin IX 97.3 0.0019 4.2E-08 42.9 7.2 81 4-95 132-217 (230)
49 TIGR02072 BioC biotin biosynth 97.2 0.0031 6.8E-08 41.8 7.3 75 3-92 102-176 (240)
50 PTZ00146 fibrillarin; Provisio 97.1 0.0064 1.4E-07 42.7 8.8 75 8-102 206-284 (293)
51 PLN02585 magnesium protoporphy 97.1 0.0014 3.1E-08 46.4 5.6 80 4-95 217-302 (315)
52 PF12147 Methyltransf_20: Puta 97.1 0.0044 9.6E-08 43.5 7.8 92 3-104 213-311 (311)
53 PLN03075 nicotianamine synthas 97.1 0.00065 1.4E-08 47.7 3.7 35 4-38 199-233 (296)
54 TIGR02021 BchM-ChlM magnesium 97.1 0.0021 4.6E-08 42.7 5.9 83 4-94 124-208 (219)
55 PF13847 Methyltransf_31: Meth 97.1 0.00017 3.7E-09 45.4 0.4 76 3-84 77-152 (152)
56 PRK05785 hypothetical protein; 97.0 0.0052 1.1E-07 41.4 7.5 93 4-104 115-224 (226)
57 TIGR00537 hemK_rel_arch HemK-r 97.0 0.0063 1.4E-07 39.2 7.6 59 17-104 119-177 (179)
58 PRK10611 chemotaxis methyltran 97.0 0.00093 2E-08 46.7 3.5 37 3-39 227-263 (287)
59 PRK01683 trans-aconitate 2-met 96.9 0.0071 1.5E-07 41.1 7.2 80 3-87 97-182 (258)
60 PF01739 CheR: CheR methyltran 96.6 0.0017 3.8E-08 43.0 2.7 38 2-39 139-176 (196)
61 PF12847 Methyltransf_18: Meth 96.6 0.0032 6.9E-08 37.1 3.4 31 8-38 80-111 (112)
62 TIGR03840 TMPT_Se_Te thiopurin 96.6 0.034 7.4E-07 37.2 8.6 67 6-92 120-187 (213)
63 PRK00517 prmA ribosomal protei 96.4 0.04 8.7E-07 37.6 8.3 57 15-100 190-246 (250)
64 PF05401 NodS: Nodulation prot 96.4 0.0045 9.9E-08 41.1 3.3 38 2-39 109-147 (201)
65 TIGR03439 methyl_EasF probable 96.3 0.0077 1.7E-07 42.8 4.5 36 1-36 159-195 (319)
66 PF05219 DREV: DREV methyltran 96.2 0.025 5.5E-07 39.1 6.5 76 7-94 159-242 (265)
67 PRK13255 thiopurine S-methyltr 96.2 0.063 1.4E-06 36.1 8.3 67 6-92 123-190 (218)
68 PRK14968 putative methyltransf 96.2 0.065 1.4E-06 34.3 8.1 59 17-104 127-188 (188)
69 COG4798 Predicted methyltransf 96.2 0.027 5.9E-07 37.6 6.1 65 14-93 142-206 (238)
70 PRK10258 biotin biosynthesis p 96.1 0.032 6.9E-07 37.8 6.5 72 7-87 111-182 (251)
71 COG2227 UbiG 2-polyprenyl-3-me 96.0 0.0066 1.4E-07 41.4 2.8 82 4-93 129-216 (243)
72 COG4301 Uncharacterized conser 96.0 0.029 6.2E-07 38.9 5.8 39 2-40 157-196 (321)
73 TIGR03534 RF_mod_PrmC protein- 95.9 0.026 5.6E-07 37.9 5.2 47 18-94 197-243 (251)
74 PF05148 Methyltransf_8: Hypot 95.6 0.032 7E-07 37.5 4.8 60 18-104 138-197 (219)
75 PF11968 DUF3321: Putative met 95.6 0.1 2.3E-06 35.2 7.1 70 3-94 108-183 (219)
76 KOG1270 Methyltransferases [Co 95.6 0.018 3.9E-07 39.9 3.5 82 4-92 163-249 (282)
77 TIGR02081 metW methionine bios 95.3 0.089 1.9E-06 34.3 6.0 26 68-93 143-168 (194)
78 PF03848 TehB: Tellurite resis 95.2 0.052 1.1E-06 35.9 4.7 67 7-91 102-168 (192)
79 PF05724 TPMT: Thiopurine S-me 95.0 0.049 1.1E-06 36.6 4.3 67 6-92 123-190 (218)
80 KOG3045 Predicted RNA methylas 94.9 0.15 3.1E-06 35.7 6.4 71 2-104 233-303 (325)
81 KOG2899 Predicted methyltransf 94.9 0.047 1E-06 37.7 3.9 80 1-88 172-253 (288)
82 COG1352 CheR Methylase of chem 94.9 0.056 1.2E-06 37.6 4.3 37 3-39 206-242 (268)
83 PRK08287 cobalt-precorrin-6Y C 94.8 0.16 3.5E-06 32.9 6.1 47 17-92 110-156 (187)
84 PF06859 Bin3: Bicoid-interact 94.6 0.0043 9.3E-08 37.5 -1.4 79 6-93 12-93 (110)
85 PF08242 Methyltransf_12: Meth 94.2 0.049 1.1E-06 31.4 2.5 20 15-34 80-99 (99)
86 PRK09328 N5-glutamine S-adenos 94.2 0.38 8.3E-06 32.8 7.2 57 17-103 217-274 (275)
87 TIGR02469 CbiT precorrin-6Y C5 94.1 0.082 1.8E-06 31.3 3.4 27 11-37 95-121 (124)
88 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.1 0.045 9.8E-07 37.8 2.4 64 15-92 176-239 (256)
89 PRK13256 thiopurine S-methyltr 93.7 0.22 4.7E-06 33.8 5.2 37 6-42 131-167 (226)
90 cd02440 AdoMet_MTases S-adenos 93.6 0.25 5.3E-06 27.4 4.6 32 5-37 72-103 (107)
91 TIGR00027 mthyl_TIGR00027 meth 93.5 0.57 1.2E-05 32.3 7.0 83 2-90 161-248 (260)
92 TIGR03587 Pse_Me-ase pseudamin 93.3 0.28 6E-06 32.6 5.2 38 4-43 110-147 (204)
93 COG4627 Uncharacterized protei 93.1 0.1 2.2E-06 33.8 2.6 32 6-37 54-85 (185)
94 PRK11188 rrmJ 23S rRNA methylt 92.2 0.44 9.5E-06 31.7 4.9 23 18-40 145-167 (209)
95 PRK15001 SAM-dependent 23S rib 91.8 0.31 6.6E-06 35.6 4.1 30 9-38 311-340 (378)
96 TIGR00091 tRNA (guanine-N(7)-) 91.7 0.19 4E-06 32.9 2.6 21 18-38 112-132 (194)
97 TIGR00138 gidB 16S rRNA methyl 90.7 0.28 6.1E-06 31.9 2.8 21 18-38 122-142 (181)
98 COG3315 O-Methyltransferase in 90.6 1.4 3E-05 31.1 6.3 87 2-90 173-262 (297)
99 PF03291 Pox_MCEL: mRNA cappin 90.2 0.18 3.9E-06 36.1 1.6 34 5-38 151-186 (331)
100 PF10017 Methyltransf_33: Hist 90.2 0.74 1.6E-05 28.3 4.2 33 67-99 92-125 (127)
101 PF11899 DUF3419: Protein of u 90.1 0.66 1.4E-05 33.9 4.5 41 2-42 298-338 (380)
102 PRK00121 trmB tRNA (guanine-N( 89.4 0.37 8.1E-06 31.8 2.6 22 17-38 135-156 (202)
103 PRK14967 putative methyltransf 89.0 3.6 7.8E-05 27.4 7.1 24 17-40 138-161 (223)
104 PRK09489 rsmC 16S ribosomal RN 87.8 1.4 3.1E-05 31.6 4.8 32 8-39 270-304 (342)
105 KOG1331 Predicted methyltransf 87.7 0.59 1.3E-05 32.9 2.7 35 5-39 109-144 (293)
106 TIGR00438 rrmJ cell division p 87.6 0.84 1.8E-05 29.5 3.3 21 17-37 125-145 (188)
107 PRK07402 precorrin-6B methylas 86.5 0.93 2E-05 29.5 3.1 24 16-39 120-143 (196)
108 PF07942 N2227: N2227-like pro 86.3 6.1 0.00013 27.6 7.1 62 17-92 181-242 (270)
109 PRK00377 cbiT cobalt-precorrin 86.1 1 2.2E-05 29.4 3.2 23 14-36 121-143 (198)
110 COG5459 Predicted rRNA methyla 85.9 0.88 1.9E-05 33.3 2.8 41 2-42 189-229 (484)
111 KOG1975 mRNA cap methyltransfe 85.8 1.1 2.3E-05 32.5 3.2 31 5-35 202-234 (389)
112 PRK00107 gidB 16S rRNA methylt 85.2 1.2 2.7E-05 29.2 3.2 22 17-38 124-145 (187)
113 TIGR00006 S-adenosyl-methyltra 84.5 1.5 3.2E-05 31.2 3.5 29 16-44 218-246 (305)
114 COG0275 Predicted S-adenosylme 84.5 1.8 4E-05 30.8 3.9 29 16-44 222-250 (314)
115 COG4106 Tam Trans-aconitate me 84.2 1.1 2.5E-05 30.6 2.7 91 7-103 100-202 (257)
116 COG4123 Predicted O-methyltran 82.7 13 0.00028 25.7 7.4 58 17-104 149-212 (248)
117 COG2521 Predicted archaeal met 82.6 9.4 0.0002 26.6 6.5 65 7-93 208-278 (287)
118 PRK00050 16S rRNA m(4)C1402 me 82.3 2.1 4.5E-05 30.3 3.5 29 16-44 214-242 (296)
119 TIGR00406 prmA ribosomal prote 82.2 2.6 5.6E-05 29.4 3.9 24 16-39 237-260 (288)
120 COG2519 GCD14 tRNA(1-methylade 82.1 2.1 4.6E-05 29.7 3.4 33 8-42 167-199 (256)
121 PF07109 Mg-por_mtran_C: Magne 81.5 8.8 0.00019 22.7 6.8 77 8-96 4-86 (97)
122 TIGR00563 rsmB ribosomal RNA s 81.1 2 4.4E-05 31.6 3.2 25 18-42 348-372 (426)
123 COG2242 CobL Precorrin-6B meth 81.0 2 4.4E-05 28.4 2.8 22 17-38 114-135 (187)
124 PF05175 MTS: Methyltransferas 80.0 1.4 3.1E-05 28.1 1.9 24 16-39 118-141 (170)
125 PRK04457 spermidine synthase; 79.0 2.4 5.2E-05 29.2 2.9 20 18-37 157-176 (262)
126 TIGR03439 methyl_EasF probable 78.7 4.1 8.8E-05 29.1 4.0 33 67-99 284-317 (319)
127 PF08845 SymE_toxin: Toxin Sym 78.7 1.8 3.9E-05 23.0 1.7 16 78-93 31-46 (57)
128 PRK14901 16S rRNA methyltransf 78.3 2.7 5.9E-05 31.0 3.2 24 18-41 364-387 (434)
129 KOG3987 Uncharacterized conser 78.2 5.8 0.00013 27.2 4.4 69 17-94 185-262 (288)
130 PRK14121 tRNA (guanine-N(7)-)- 77.6 3.5 7.5E-05 30.4 3.5 21 18-38 215-235 (390)
131 COG2813 RsmC 16S RNA G1207 met 77.2 3.7 8.1E-05 29.2 3.4 26 14-39 242-267 (300)
132 PRK11088 rrmA 23S rRNA methylt 76.8 2.7 5.8E-05 28.9 2.6 19 20-38 163-181 (272)
133 PRK01581 speE spermidine synth 76.7 2.8 6.2E-05 30.7 2.8 21 17-37 247-267 (374)
134 PF01795 Methyltransf_5: MraW 76.6 1.6 3.5E-05 31.1 1.5 29 16-44 219-247 (310)
135 COG0500 SmtA SAM-dependent met 75.9 8.5 0.00018 22.2 4.4 27 17-43 134-160 (257)
136 PF13659 Methyltransf_26: Meth 75.9 1.5 3.2E-05 25.7 1.0 22 16-37 93-114 (117)
137 TIGR00446 nop2p NOL1/NOP2/sun 75.9 3.7 8.1E-05 28.2 3.1 24 18-41 179-202 (264)
138 PRK10901 16S rRNA methyltransf 75.0 4 8.7E-05 30.1 3.3 24 18-41 352-375 (427)
139 TIGR01177 conserved hypothetic 74.7 5 0.00011 28.5 3.6 22 17-38 273-294 (329)
140 PRK14904 16S rRNA methyltransf 74.1 4.1 8.9E-05 30.2 3.1 24 18-41 357-380 (445)
141 PLN02366 spermidine synthase 73.9 3.8 8.3E-05 29.1 2.8 21 17-37 185-205 (308)
142 PRK03612 spermidine synthase; 73.4 3.3 7.2E-05 31.4 2.6 20 18-37 395-414 (521)
143 PRK11933 yebU rRNA (cytosine-C 72.8 3.8 8.2E-05 30.9 2.7 21 18-38 222-242 (470)
144 COG0503 Apt Adenine/guanine ph 72.1 14 0.00031 24.0 5.0 44 24-93 109-152 (179)
145 COG2264 PrmA Ribosomal protein 71.7 34 0.00073 24.4 7.4 53 17-98 242-294 (300)
146 PF06325 PrmA: Ribosomal prote 71.5 14 0.00031 26.1 5.2 57 14-100 235-291 (295)
147 PRK11805 N5-glutamine S-adenos 70.9 6.3 0.00014 27.9 3.4 20 17-36 242-261 (307)
148 PRK14903 16S rRNA methyltransf 70.8 5.5 0.00012 29.5 3.2 24 18-41 346-369 (431)
149 TIGR03533 L3_gln_methyl protei 70.5 6.6 0.00014 27.4 3.4 20 17-36 230-249 (284)
150 PRK14902 16S rRNA methyltransf 70.0 7.1 0.00015 28.9 3.6 22 18-39 359-380 (444)
151 PRK14966 unknown domain/N5-glu 69.6 45 0.00097 25.0 7.8 57 17-103 360-417 (423)
152 cd01842 SGNH_hydrolase_like_5 69.5 13 0.00028 24.6 4.3 38 2-39 53-100 (183)
153 TIGR00417 speE spermidine synt 69.2 5.4 0.00012 27.5 2.7 21 17-37 165-185 (270)
154 TIGR02764 spore_ybaN_pdaB poly 68.9 6.2 0.00013 25.5 2.8 57 10-90 131-187 (191)
155 PF05772 NinB: NinB protein; 68.8 12 0.00026 23.2 3.9 36 56-93 47-87 (127)
156 KOG2198 tRNA cytosine-5-methyl 68.3 5.4 0.00012 29.2 2.5 24 18-41 276-299 (375)
157 PRK00811 spermidine synthase; 67.9 6.3 0.00014 27.5 2.8 21 17-37 170-190 (283)
158 PRK11524 putative methyltransf 67.9 7 0.00015 27.2 3.1 20 18-37 60-79 (284)
159 PRK13942 protein-L-isoaspartat 67.8 4.5 9.7E-05 26.9 2.0 20 19-38 157-176 (212)
160 PF05430 Methyltransf_30: S-ad 66.9 13 0.00029 22.7 3.8 32 73-104 92-123 (124)
161 PF01555 N6_N4_Mtase: DNA meth 66.2 3.9 8.6E-05 26.6 1.5 21 17-37 35-55 (231)
162 PF13578 Methyltransf_24: Meth 65.8 4.3 9.2E-05 23.5 1.4 24 15-38 82-105 (106)
163 KOG2918 Carboxymethyl transfer 65.5 27 0.00058 25.2 5.5 77 8-93 197-278 (335)
164 PRK13699 putative methylase; P 65.2 9.2 0.0002 25.8 3.1 20 17-36 51-70 (227)
165 PF03269 DUF268: Caenorhabditi 65.2 12 0.00027 24.4 3.5 25 18-42 91-115 (177)
166 PRK13944 protein-L-isoaspartat 64.7 6.7 0.00014 25.8 2.4 18 20-37 155-172 (205)
167 TIGR03704 PrmC_rel_meth putati 64.4 9.7 0.00021 26.0 3.2 21 17-37 195-215 (251)
168 PRK08558 adenine phosphoribosy 64.0 8.3 0.00018 26.4 2.7 58 26-92 171-236 (238)
169 PF09243 Rsm22: Mitochondrial 64.0 12 0.00026 26.0 3.6 39 2-42 105-143 (274)
170 TIGR00080 pimt protein-L-isoas 63.4 5.6 0.00012 26.3 1.8 20 18-37 157-176 (215)
171 PF11312 DUF3115: Protein of u 63.3 12 0.00026 26.9 3.5 26 15-40 219-244 (315)
172 COG0144 Sun tRNA and rRNA cyto 63.2 7.9 0.00017 28.0 2.7 24 18-41 268-291 (355)
173 PRK00312 pcm protein-L-isoaspa 63.2 8 0.00017 25.4 2.5 21 18-38 155-175 (212)
174 PHA03411 putative methyltransf 62.7 19 0.0004 25.4 4.3 47 18-87 163-209 (279)
175 PF14740 DUF4471: Domain of un 61.6 6.9 0.00015 27.7 2.1 59 1-89 225-286 (289)
176 PF08002 DUF1697: Protein of u 61.5 11 0.00024 23.5 2.8 34 67-101 14-48 (137)
177 TIGR00536 hemK_fam HemK family 60.7 14 0.00029 25.7 3.4 23 16-39 222-244 (284)
178 TIGR02873 spore_ylxY probable 59.6 9.9 0.00022 26.4 2.6 29 10-38 210-238 (268)
179 PF07927 YcfA: YcfA-like prote 58.9 9.3 0.0002 19.5 1.8 17 74-90 2-18 (56)
180 PF08468 MTS_N: Methyltransfer 58.6 17 0.00038 23.1 3.4 31 9-39 74-106 (155)
181 PF14258 DUF4350: Domain of un 57.5 21 0.00046 19.1 3.2 11 30-40 34-44 (70)
182 PRK00536 speE spermidine synth 57.3 13 0.00029 25.8 2.9 20 18-37 151-170 (262)
183 PF10006 DUF2249: Uncharacteri 56.2 28 0.0006 18.7 3.6 28 13-40 8-35 (69)
184 PF13592 HTH_33: Winged helix- 56.2 13 0.00028 19.6 2.1 27 67-93 18-44 (60)
185 PF15585 Imm46: Immunity prote 55.3 32 0.00069 21.5 4.0 37 3-40 53-94 (129)
186 PRK13605 endoribonuclease SymE 54.7 16 0.00035 22.2 2.6 16 77-92 44-59 (113)
187 PF01206 TusA: Sulfurtransfera 54.6 17 0.00036 19.4 2.5 27 73-99 40-66 (70)
188 COG4976 Predicted methyltransf 54.3 66 0.0014 22.5 5.7 61 18-93 205-266 (287)
189 TIGR01033 DNA-binding regulato 54.0 26 0.00056 24.1 3.8 14 29-42 91-104 (238)
190 PRK06132 hypothetical protein; 53.5 16 0.00034 26.7 2.8 24 18-41 321-344 (359)
191 cd01093 CRIB_PAK_like PAK (p21 53.3 9.6 0.00021 19.1 1.3 18 72-89 27-44 (46)
192 PF06557 DUF1122: Protein of u 53.1 22 0.00048 23.1 3.1 64 14-94 62-125 (170)
193 cd03421 SirA_like_N SirA_like_ 52.8 34 0.00074 18.1 4.3 29 73-103 38-66 (67)
194 PF06962 rRNA_methylase: Putat 52.6 9.9 0.00021 24.0 1.5 25 16-40 70-94 (140)
195 PF08704 GCD14: tRNA methyltra 52.4 4.6 0.0001 27.8 -0.0 32 8-41 117-149 (247)
196 PF03059 NAS: Nicotianamine sy 51.9 22 0.00047 25.0 3.2 27 11-37 203-229 (276)
197 PRK10858 nitrogen regulatory p 51.7 34 0.00073 20.6 3.7 27 13-39 66-96 (112)
198 PRK09489 rsmC 16S ribosomal RN 51.5 28 0.00061 25.1 3.9 34 8-41 80-115 (342)
199 PLN02823 spermine synthase 50.9 17 0.00038 26.1 2.7 19 18-36 199-218 (336)
200 KOG1269 SAM-dependent methyltr 50.7 18 0.00038 26.5 2.7 25 18-42 195-219 (364)
201 PLN02781 Probable caffeoyl-CoA 50.7 29 0.00062 23.5 3.6 25 15-40 155-179 (234)
202 PF03574 Peptidase_S48: Peptid 50.0 14 0.00029 23.0 1.7 27 8-34 13-39 (149)
203 KOG2798 Putative trehalase [Ca 49.7 1E+02 0.0022 22.6 6.5 65 17-94 275-339 (369)
204 PRK06852 aldolase; Validated 49.4 17 0.00038 25.9 2.5 30 9-38 8-37 (304)
205 cd03413 CbiK_C Anaerobic cobal 49.3 19 0.00041 21.2 2.3 19 73-91 81-99 (103)
206 PF13319 DUF4090: Protein of u 49.1 23 0.00049 20.1 2.4 25 67-91 55-79 (84)
207 PRK02220 4-oxalocrotonate taut 49.0 35 0.00076 17.5 3.1 37 7-43 7-49 (61)
208 PF09382 RQC: RQC domain; Int 48.9 12 0.00025 21.8 1.4 62 15-82 4-65 (106)
209 TIGR03473 HpnK hopanoid biosyn 48.5 58 0.0013 22.8 4.9 63 18-89 214-277 (283)
210 PF01870 Hjc: Archaeal hollida 48.5 14 0.0003 21.4 1.5 19 73-91 3-21 (88)
211 PF06968 BATS: Biotin and Thia 48.0 16 0.00035 21.1 1.8 76 10-86 17-92 (93)
212 COG0421 SpeE Spermidine syntha 47.9 18 0.0004 25.4 2.4 20 18-37 170-189 (282)
213 PF02636 Methyltransf_28: Puta 47.8 31 0.00067 23.4 3.4 27 16-42 172-198 (252)
214 PF01189 Nol1_Nop2_Fmu: NOL1/N 47.2 7.5 0.00016 27.1 0.4 22 18-39 195-220 (283)
215 PRK00110 hypothetical protein; 47.0 44 0.00095 23.1 4.1 19 72-90 146-164 (245)
216 cd08283 FDH_like_1 Glutathione 46.6 27 0.00058 25.1 3.1 32 7-40 277-308 (386)
217 KOG1661 Protein-L-isoaspartate 46.6 13 0.00028 25.4 1.4 21 17-37 172-192 (237)
218 cd03422 YedF YedF is a bacteri 46.2 48 0.001 17.8 3.5 23 73-95 39-61 (69)
219 KOG3451 Uncharacterized conser 44.8 25 0.00053 19.4 2.1 27 13-39 12-38 (71)
220 PRK09219 xanthine phosphoribos 44.8 19 0.00041 23.7 2.0 60 26-94 112-179 (189)
221 PF05924 SAMP: SAMP Motif; In 44.8 24 0.00053 14.6 1.6 12 19-30 4-15 (20)
222 PRK10556 hypothetical protein; 44.7 27 0.0006 20.7 2.4 22 72-93 4-25 (111)
223 PRK01544 bifunctional N5-gluta 44.5 25 0.00055 26.7 2.8 20 17-36 248-267 (506)
224 COG2518 Pcm Protein-L-isoaspar 44.4 21 0.00046 24.1 2.2 18 22-39 153-170 (209)
225 KOG0902 Phosphatidylinositol 4 44.2 30 0.00064 30.2 3.3 29 76-104 1569-1601(1803)
226 cd02931 ER_like_FMN Enoate red 43.8 1.2E+02 0.0026 22.2 6.2 29 12-40 76-104 (382)
227 PRK10665 nitrogen regulatory p 43.4 53 0.0011 19.8 3.6 27 13-39 66-96 (112)
228 COG4822 CbiK Cobalamin biosynt 42.4 31 0.00067 23.7 2.7 19 72-90 217-235 (265)
229 PF00543 P-II: Nitrogen regula 42.2 25 0.00053 20.5 2.0 27 13-39 63-93 (102)
230 PF10281 Ish1: Putative stress 42.2 36 0.00077 16.1 2.3 18 71-88 4-21 (38)
231 cd03420 SirA_RHOD_Pry_redox Si 42.1 56 0.0012 17.5 3.5 25 73-97 39-63 (69)
232 PF02390 Methyltransf_4: Putat 41.9 14 0.0003 24.3 1.0 21 18-38 113-133 (195)
233 PF11305 DUF3107: Protein of u 41.6 35 0.00075 19.2 2.4 26 13-38 18-44 (74)
234 PF03141 Methyltransf_29: Puta 41.6 10 0.00022 28.9 0.4 36 6-42 188-223 (506)
235 PRK11018 hypothetical protein; 41.5 62 0.0013 17.9 3.5 23 73-95 48-70 (78)
236 COG0566 SpoU rRNA methylases [ 41.5 31 0.00066 23.9 2.7 22 72-93 171-192 (260)
237 PF06897 DUF1269: Protein of u 41.1 48 0.001 19.6 3.1 21 19-39 43-63 (102)
238 PF01316 Arg_repressor: Argini 40.8 30 0.00065 19.1 2.1 22 67-88 16-37 (70)
239 cd03423 SirA SirA (also known 40.7 60 0.0013 17.4 4.5 25 73-97 39-63 (69)
240 PRK12378 hypothetical protein; 40.4 47 0.001 22.8 3.4 14 29-42 88-101 (235)
241 PF07862 Nif11: Nitrogen fixat 40.1 38 0.00082 16.9 2.3 18 71-88 27-44 (49)
242 PF08123 DOT1: Histone methyla 40.1 41 0.00088 22.5 3.0 33 12-45 133-165 (205)
243 cd00291 SirA_YedF_YeeD SirA, Y 40.0 58 0.0013 17.0 4.6 24 72-95 38-61 (69)
244 PF03698 UPF0180: Uncharacteri 40.0 28 0.0006 19.8 1.9 25 69-93 6-30 (80)
245 PF00107 ADH_zinc_N: Zinc-bind 39.7 16 0.00035 21.5 1.0 24 18-41 69-92 (130)
246 TIGR01743 purR_Bsub pur operon 39.5 76 0.0017 22.2 4.4 19 26-44 189-207 (268)
247 COG0220 Predicted S-adenosylme 39.4 43 0.00093 22.8 3.1 21 18-38 144-164 (227)
248 COG2813 RsmC 16S RNA G1207 met 38.7 59 0.0013 23.3 3.7 33 8-40 41-75 (300)
249 TIGR01744 XPRTase xanthine pho 38.4 30 0.00065 22.8 2.2 60 26-94 112-179 (191)
250 PRK13587 1-(5-phosphoribosyl)- 38.1 66 0.0014 21.8 3.9 23 67-90 198-220 (234)
251 COG1902 NemA NADH:flavin oxido 38.0 1.6E+02 0.0035 21.6 6.0 82 9-94 74-172 (363)
252 smart00874 B5 tRNA synthetase 38.0 42 0.00091 17.9 2.4 21 68-88 16-36 (71)
253 cd04276 ZnMc_MMP_like_2 Zinc-d 37.5 48 0.001 22.1 3.0 22 72-93 29-50 (197)
254 COG1831 Predicted metal-depend 37.3 71 0.0015 22.6 3.9 83 12-94 97-194 (285)
255 PRK04280 arginine repressor; P 37.0 35 0.00076 21.6 2.2 22 67-88 15-36 (148)
256 PF09400 DUF2002: Protein of u 36.3 47 0.001 20.0 2.5 21 72-92 4-24 (111)
257 PLN03155 cytochrome c oxidase 36.0 41 0.00089 18.1 2.0 28 7-37 34-61 (63)
258 PF07647 SAM_2: SAM domain (St 35.9 31 0.00067 18.0 1.6 17 71-87 4-20 (66)
259 PF09827 CRISPR_Cas2: CRISPR a 35.7 77 0.0017 17.2 4.0 28 12-39 39-67 (78)
260 PF10087 DUF2325: Uncharacteri 35.7 38 0.00082 19.4 2.1 24 67-90 6-29 (97)
261 PF00017 SH2: SH2 domain; Int 35.7 74 0.0016 17.0 3.5 28 10-41 4-31 (77)
262 PRK01033 imidazole glycerol ph 35.6 69 0.0015 22.0 3.7 25 66-90 201-225 (258)
263 PF01436 NHL: NHL repeat; Int 35.5 22 0.00047 15.6 0.8 11 29-39 10-20 (28)
264 PRK09662 GspL-like protein; Pr 35.5 34 0.00074 24.2 2.2 20 74-93 8-27 (286)
265 COG5379 BtaA S-adenosylmethion 35.4 73 0.0016 23.2 3.7 37 3-39 331-367 (414)
266 PF12419 DUF3670: SNF2 Helicas 35.2 1.1E+02 0.0024 18.9 6.1 78 11-90 10-102 (141)
267 PF01709 Transcrip_reg: Transc 35.2 6 0.00013 27.0 -1.5 14 29-42 87-100 (234)
268 PRK05473 hypothetical protein; 34.8 30 0.00064 20.0 1.5 25 9-33 12-36 (86)
269 COG4353 Uncharacterized conser 34.7 52 0.0011 21.5 2.7 25 17-42 72-96 (192)
270 PF09286 Pro-kuma_activ: Pro-k 34.6 56 0.0012 20.1 2.9 20 72-91 63-82 (143)
271 PF08915 tRNA-Thr_ED: Archaea- 34.4 31 0.00066 21.8 1.6 30 2-31 77-107 (138)
272 PF03484 B5: tRNA synthetase B 34.3 42 0.00091 18.1 2.0 23 68-90 16-38 (70)
273 COG1438 ArgR Arginine represso 34.3 37 0.0008 21.7 2.0 21 67-87 17-37 (150)
274 COG4421 Capsular polysaccharid 34.2 37 0.0008 24.8 2.2 23 71-93 241-263 (368)
275 KOG3010 Methyltransferase [Gen 33.8 46 0.001 23.2 2.5 32 6-40 107-139 (261)
276 PF01564 Spermine_synth: Sperm 33.7 20 0.00043 24.5 0.8 22 17-38 170-191 (246)
277 cd03319 L-Ala-DL-Glu_epimerase 33.7 84 0.0018 22.0 4.0 27 67-93 234-260 (316)
278 TIGR03709 PPK2_rel_1 polyphosp 33.4 63 0.0014 22.6 3.2 68 17-91 99-166 (264)
279 PF05711 TylF: Macrocin-O-meth 33.3 20 0.00043 24.8 0.7 25 17-41 191-215 (248)
280 PLN02476 O-methyltransferase 32.7 98 0.0021 21.8 4.1 30 11-41 201-230 (278)
281 CHL00123 rps6 ribosomal protei 32.5 78 0.0017 18.4 3.1 31 11-41 17-48 (97)
282 PF03793 PASTA: PASTA domain; 32.5 66 0.0014 16.5 2.6 21 71-91 9-29 (63)
283 TIGR00013 taut 4-oxalocrotonat 32.5 77 0.0017 16.2 3.3 35 10-44 10-50 (63)
284 PF13137 DUF3983: Protein of u 32.0 23 0.00049 16.7 0.6 15 70-84 19-33 (34)
285 PF09572 RE_XamI: XamI restric 31.8 49 0.0011 23.0 2.4 74 14-90 64-143 (251)
286 COG1092 Predicted SAM-dependen 31.7 64 0.0014 23.9 3.1 23 17-39 315-337 (393)
287 PRK13510 sulfur transfer compl 31.4 56 0.0012 19.0 2.3 31 9-39 2-32 (95)
288 COG4273 Uncharacterized conser 31.0 54 0.0012 20.5 2.2 22 11-32 110-131 (135)
289 PF12646 DUF3783: Domain of un 30.9 59 0.0013 17.0 2.2 20 8-27 5-24 (58)
290 PHA00457 inhibitor of host bac 30.8 59 0.0013 17.5 2.1 13 81-93 48-60 (63)
291 COG3669 Alpha-L-fucosidase [Ca 30.7 53 0.0012 24.6 2.5 22 67-88 50-71 (430)
292 PF12780 AAA_8: P-loop contain 30.6 62 0.0013 22.5 2.8 74 15-92 14-93 (268)
293 PF12385 Peptidase_C70: Papain 30.6 1.6E+02 0.0034 19.2 4.4 28 67-95 92-119 (166)
294 PF03141 Methyltransf_29: Puta 30.4 52 0.0011 25.3 2.5 24 17-40 446-469 (506)
295 PRK13810 orotate phosphoribosy 30.4 1.6E+02 0.0035 19.3 5.2 66 25-92 116-181 (187)
296 PF00724 Oxidored_FMN: NADH:fl 29.9 1.8E+02 0.0038 20.9 5.1 85 9-94 71-172 (341)
297 COG3053 CitC Citrate lyase syn 29.7 57 0.0012 23.6 2.5 33 67-101 92-124 (352)
298 TIGR02884 spore_pdaA delta-lac 29.7 66 0.0014 21.5 2.8 56 10-91 163-221 (224)
299 PF02153 PDH: Prephenate dehyd 29.6 1.5E+02 0.0031 20.3 4.5 71 19-90 84-156 (258)
300 PRK03094 hypothetical protein; 29.4 59 0.0013 18.5 2.1 25 68-92 5-29 (80)
301 PF11599 AviRa: RRNA methyltra 29.3 89 0.0019 21.6 3.3 24 15-38 191-214 (246)
302 PF06135 DUF965: Bacterial pro 29.3 41 0.00089 19.1 1.4 21 13-33 13-33 (79)
303 PRK00299 sulfur transfer prote 29.3 1.1E+02 0.0024 17.0 3.6 23 73-95 49-71 (81)
304 COG4122 Predicted O-methyltran 29.2 1.2E+02 0.0025 20.7 3.9 32 11-43 139-170 (219)
305 PF14814 UB2H: Bifunctional tr 29.1 45 0.00097 18.9 1.6 26 67-92 3-28 (85)
306 COG1060 ThiH Thiamine biosynth 29.1 58 0.0013 23.9 2.5 26 68-93 334-359 (370)
307 COG0347 GlnK Nitrogen regulato 29.0 1.1E+02 0.0024 18.6 3.3 27 13-39 66-96 (112)
308 cd04882 ACT_Bt0572_2 C-termina 29.0 49 0.0011 16.7 1.7 15 73-87 50-64 (65)
309 PRK15450 signal transduction p 29.0 43 0.00093 19.1 1.5 18 67-84 68-85 (85)
310 PF09506 Salt_tol_Pase: Glucos 28.8 1.7E+02 0.0037 21.6 4.8 31 13-43 308-338 (381)
311 COG1064 AdhP Zn-dependent alco 28.8 82 0.0018 22.9 3.2 22 20-41 241-262 (339)
312 PF06200 tify: tify domain; I 28.5 54 0.0012 15.7 1.6 18 7-24 17-34 (36)
313 PF10354 DUF2431: Domain of un 28.4 91 0.002 20.0 3.2 50 18-94 105-154 (166)
314 COG4808 Uncharacterized protei 28.4 56 0.0012 20.7 2.0 21 68-88 131-151 (152)
315 TIGR03798 ocin_TIGR03798 bacte 28.4 72 0.0016 16.9 2.3 17 71-87 25-41 (64)
316 PRK05066 arginine repressor; P 28.3 49 0.0011 21.2 1.8 20 67-86 20-39 (156)
317 cd00173 SH2 Src homology 2 dom 28.3 85 0.0018 17.3 2.8 26 10-40 5-30 (94)
318 PRK13943 protein-L-isoaspartat 28.3 71 0.0015 22.9 2.9 20 19-38 161-180 (322)
319 COG1187 RsuA 16S rRNA uridine- 28.3 71 0.0015 22.1 2.7 25 67-94 190-214 (248)
320 PHA01782 hypothetical protein 28.3 19 0.00042 23.4 0.0 25 9-33 44-68 (177)
321 TIGR02399 salt_tol_Pase glucos 28.2 1.8E+02 0.0038 21.6 4.7 30 13-42 313-342 (389)
322 COG3963 Phospholipid N-methylt 28.1 1.6E+02 0.0035 19.6 4.2 31 10-40 128-158 (194)
323 PRK09213 pur operon repressor; 28.0 59 0.0013 22.8 2.3 19 26-44 191-209 (271)
324 PF10672 Methyltrans_SAM: S-ad 27.8 31 0.00068 24.3 1.0 23 17-39 217-239 (286)
325 PF00786 PBD: P21-Rho-binding 27.8 55 0.0012 17.1 1.7 19 71-89 25-43 (59)
326 TIGR03853 matur_matur probable 27.5 68 0.0015 18.2 2.1 21 59-81 8-28 (77)
327 cd04908 ACT_Bt0572_1 N-termina 27.5 65 0.0014 16.8 2.0 16 72-87 49-64 (66)
328 cd04909 ACT_PDH-BS C-terminal 27.4 65 0.0014 16.7 2.0 16 72-87 54-69 (69)
329 PRK15128 23S rRNA m(5)C1962 me 27.4 81 0.0018 23.3 3.1 22 18-39 319-340 (396)
330 COG0217 Uncharacterized conser 27.3 1.7E+02 0.0037 20.3 4.4 22 70-91 146-167 (241)
331 cd08230 glucose_DH Glucose deh 27.2 1.6E+02 0.0036 20.7 4.6 23 19-41 250-272 (355)
332 PF04298 Zn_peptidase_2: Putat 27.1 1.3E+02 0.0029 20.6 3.8 26 70-95 36-62 (222)
333 COG4130 Predicted sugar epimer 27.0 83 0.0018 21.8 2.8 26 71-96 49-74 (272)
334 KOG2535 RNA polymerase II elon 27.0 48 0.001 24.6 1.8 28 60-87 291-319 (554)
335 PF00536 SAM_1: SAM domain (St 27.0 57 0.0012 16.8 1.7 17 71-87 3-19 (64)
336 PF00403 HMA: Heavy-metal-asso 27.0 62 0.0013 16.5 1.9 57 11-86 6-62 (62)
337 COG3327 PaaX Phenylacetic acid 26.7 62 0.0013 22.8 2.2 31 10-40 235-265 (291)
338 PRK02289 4-oxalocrotonate taut 26.7 1E+02 0.0022 15.9 3.7 36 7-42 7-48 (60)
339 PF03434 DUF276: DUF276 ; Int 26.5 67 0.0015 22.4 2.3 21 14-34 54-74 (291)
340 PF08373 RAP: RAP domain; Int 26.3 60 0.0013 16.5 1.7 15 77-91 24-38 (58)
341 PF08351 DUF1726: Domain of un 26.2 1E+02 0.0023 17.7 2.9 26 15-40 22-47 (92)
342 PF14117 DUF4287: Domain of un 26.0 74 0.0016 17.1 2.0 14 71-84 15-28 (61)
343 PF03514 GRAS: GRAS domain fam 25.7 45 0.00097 24.3 1.5 20 72-91 311-330 (374)
344 PF14566 PTPlike_phytase: Inos 25.6 1.4E+02 0.0031 18.6 3.6 29 10-39 103-131 (149)
345 PF13580 SIS_2: SIS domain; PD 25.5 67 0.0014 19.7 2.1 26 14-39 18-43 (138)
346 PF13399 LytR_C: LytR cell env 25.3 74 0.0016 17.7 2.1 23 71-93 16-38 (90)
347 PF11590 DNAPolymera_Pol: DNA 25.1 57 0.0012 16.0 1.3 15 75-89 2-16 (41)
348 PF08149 BING4CT: BING4CT (NUC 25.0 1.1E+02 0.0024 17.4 2.7 17 67-83 55-71 (80)
349 TIGR00150 HI0065_YjeE ATPase, 24.8 1.8E+02 0.0038 18.1 3.8 28 13-40 4-31 (133)
350 smart00463 SMR Small MutS-rela 24.8 82 0.0018 17.2 2.2 24 9-32 6-29 (80)
351 COG1236 YSH1 Predicted exonucl 24.6 1E+02 0.0022 23.0 3.1 36 7-42 192-227 (427)
352 COG2103 Predicted sugar phosph 24.6 74 0.0016 22.6 2.3 74 17-91 46-133 (298)
353 PF11455 DUF3018: Protein of 24.5 1E+02 0.0022 16.8 2.4 18 74-91 6-23 (65)
354 PRK11783 rlmL 23S rRNA m(2)G24 24.5 95 0.0021 24.7 3.2 21 17-37 635-655 (702)
355 COG2738 Predicted Zn-dependent 24.5 1.3E+02 0.0027 20.5 3.2 29 68-96 37-66 (226)
356 PF07021 MetW: Methionine bios 24.5 1.6E+02 0.0035 19.6 3.8 81 3-95 79-170 (193)
357 PF15072 DUF4539: Domain of un 24.5 69 0.0015 18.4 1.9 22 18-39 38-59 (86)
358 cd02554 PseudoU_synth_RluF Pse 24.5 1E+02 0.0022 19.8 2.8 21 74-94 120-140 (164)
359 PF02913 FAD-oxidase_C: FAD li 24.3 54 0.0012 21.4 1.6 21 14-34 223-243 (248)
360 KOG1712 Adenine phosphoribosyl 24.3 59 0.0013 21.3 1.7 20 24-43 115-134 (183)
361 cd00166 SAM Sterile alpha moti 24.3 78 0.0017 15.9 2.0 13 74-86 17-29 (63)
362 PRK12560 adenine phosphoribosy 24.1 81 0.0018 20.6 2.4 67 27-94 110-177 (187)
363 PF05336 DUF718: Domain of unk 24.0 1.6E+02 0.0036 17.3 3.7 30 73-102 25-57 (106)
364 cd03315 MLE_like Muconate lact 24.0 1E+02 0.0022 21.0 2.9 27 67-93 186-212 (265)
365 PRK13245 hetR heterocyst diffe 24.0 35 0.00076 23.5 0.6 28 6-33 64-91 (299)
366 COG3581 Uncharacterized protei 24.0 84 0.0018 23.5 2.6 32 62-94 77-111 (420)
367 smart00252 SH2 Src homology 2 23.9 1.1E+02 0.0023 16.6 2.6 25 11-40 7-31 (84)
368 PF14001 YdfZ: YdfZ protein 23.8 51 0.0011 17.9 1.1 15 25-39 7-21 (64)
369 PF10294 Methyltransf_16: Puta 23.8 1.6E+02 0.0036 18.7 3.7 25 15-39 133-157 (173)
370 TIGR03318 YdfZ_fam putative se 23.7 60 0.0013 17.7 1.4 16 24-39 7-22 (65)
371 PRK05298 excinuclease ABC subu 23.7 72 0.0016 25.1 2.4 31 67-97 163-193 (652)
372 cd07986 LPLAT_ACT14924-like Ly 23.7 1.1E+02 0.0024 20.1 3.0 22 16-37 83-104 (210)
373 COG2893 ManX Phosphotransferas 23.7 1.8E+02 0.0038 18.3 3.7 84 9-93 33-131 (143)
374 cd04418 NDPk5 Nucleoside dipho 23.7 79 0.0017 19.4 2.1 21 73-93 15-35 (132)
375 PF13344 Hydrolase_6: Haloacid 23.5 72 0.0016 18.5 1.9 21 67-87 38-58 (101)
376 COG4004 Uncharacterized protei 23.5 1.7E+02 0.0037 17.2 4.4 37 67-103 8-48 (96)
377 cd02930 DCR_FMN 2,4-dienoyl-Co 23.4 2E+02 0.0044 20.6 4.5 27 14-40 72-98 (353)
378 COG3019 Predicted metal-bindin 23.4 88 0.0019 20.0 2.3 19 74-92 40-58 (149)
379 TIGR03707 PPK2_P_aer polyphosp 23.3 89 0.0019 21.4 2.5 70 15-91 72-141 (230)
380 TIGR01202 bchC 2-desacetyl-2-h 23.3 98 0.0021 21.4 2.8 22 19-40 212-233 (308)
381 PF14561 TPR_20: Tetratricopep 23.3 63 0.0014 18.5 1.6 21 11-31 54-74 (90)
382 PF12101 DUF3577: Protein of u 23.1 1.3E+02 0.0028 19.0 3.0 27 14-40 60-86 (137)
383 cd05007 SIS_Etherase N-acetylm 23.0 1E+02 0.0022 21.2 2.8 24 16-39 34-57 (257)
384 cd08258 Zn_ADH4 Alcohol dehydr 23.0 1.8E+02 0.004 20.0 4.1 23 19-41 245-267 (306)
385 PF03492 Methyltransf_7: SAM d 22.9 1.8E+02 0.0038 20.9 4.1 26 18-43 163-188 (334)
386 TIGR00007 phosphoribosylformim 22.8 1.6E+02 0.0035 19.4 3.7 24 66-90 194-217 (230)
387 PF10237 N6-adenineMlase: Prob 22.8 1.9E+02 0.0042 18.5 3.9 27 13-39 8-34 (162)
388 PF13670 PepSY_2: Peptidase pr 22.8 1.5E+02 0.0032 16.3 5.4 30 68-97 26-55 (83)
389 cd04415 NDPk7A Nucleoside diph 22.7 79 0.0017 19.5 2.0 21 73-93 15-35 (131)
390 PF05706 CDKN3: Cyclin-depende 22.7 80 0.0017 20.6 2.1 22 16-37 118-139 (168)
391 TIGR02819 fdhA_non_GSH formald 22.7 1E+02 0.0022 22.4 2.9 22 19-40 280-301 (393)
392 COG1724 Predicted RNA binding 22.7 1.3E+02 0.0027 16.5 2.5 20 72-91 8-27 (66)
393 KOG1092 Ypt/Rab-specific GTPas 22.6 77 0.0017 24.0 2.2 17 10-26 455-471 (484)
394 PLN02589 caffeoyl-CoA O-methyl 22.5 1.4E+02 0.003 20.6 3.3 30 11-41 163-192 (247)
395 COG0065 LeuC 3-isopropylmalate 22.4 1.5E+02 0.0033 22.2 3.6 44 2-45 27-71 (423)
396 PF15603 Imm45: Immunity prote 22.3 1.7E+02 0.0036 16.7 3.3 26 13-38 57-82 (82)
397 PF07076 DUF1344: Protein of u 22.3 72 0.0016 17.2 1.5 18 25-42 35-52 (61)
398 PF06258 Mito_fiss_Elm1: Mitoc 22.3 1E+02 0.0022 22.0 2.7 30 9-38 159-189 (311)
399 PF08671 SinI: Anti-repressor 22.2 63 0.0014 14.8 1.1 16 74-89 3-21 (30)
400 PF03662 Glyco_hydro_79n: Glyc 22.0 51 0.0011 23.7 1.2 17 18-34 52-73 (319)
401 PRK10309 galactitol-1-phosphat 22.0 1E+02 0.0022 21.6 2.7 23 19-41 241-263 (347)
402 cd05167 PI4Kc_III_alpha Phosph 21.8 1.9E+02 0.0041 20.7 4.0 30 75-104 76-109 (311)
403 PRK11509 hydrogenase-1 operon 21.8 2.1E+02 0.0046 17.8 3.8 63 16-82 53-122 (132)
404 COG5443 FlbT Flagellar biosynt 21.7 1E+02 0.0022 19.4 2.3 16 26-41 7-22 (148)
405 TIGR02277 PaaX_trns_reg phenyl 21.6 71 0.0015 22.4 1.8 32 10-41 230-261 (280)
406 PF12368 DUF3650: Protein of u 21.6 74 0.0016 14.4 1.2 13 10-22 14-26 (28)
407 PRK01964 4-oxalocrotonate taut 21.5 1.4E+02 0.003 15.5 3.0 35 10-44 10-50 (64)
408 TIGR02822 adh_fam_2 zinc-bindi 21.5 1.1E+02 0.0025 21.3 2.9 22 19-40 235-256 (329)
409 COG3510 CmcI Cephalosporin hyd 21.5 2E+02 0.0043 19.6 3.7 32 16-47 158-189 (237)
410 cd03067 PDI_b_PDIR_N PDIb fami 21.4 1.9E+02 0.0041 17.5 3.3 25 17-41 36-60 (112)
411 cd08237 ribitol-5-phosphate_DH 21.2 1.2E+02 0.0026 21.3 2.9 21 19-39 237-257 (341)
412 PF00675 Peptidase_M16: Insuli 21.2 2E+02 0.0044 17.3 4.0 22 66-87 43-64 (149)
413 PRK15440 L-rhamnonate dehydrat 21.2 1.1E+02 0.0024 22.5 2.8 24 69-92 269-292 (394)
414 cd04723 HisA_HisF Phosphoribos 21.2 2.5E+02 0.0053 18.9 4.3 69 17-90 148-217 (233)
415 PF05046 Img2: Mitochondrial l 21.2 82 0.0018 18.0 1.7 13 73-85 75-87 (87)
416 KOG2698 GTP cyclohydrolase I [ 21.1 1.5E+02 0.0033 20.2 3.2 22 18-39 183-204 (247)
417 KOG2539 Mitochondrial/chloropl 21.0 1.9E+02 0.0042 22.2 4.0 41 2-42 277-319 (491)
418 PF08952 DUF1866: Domain of un 21.0 54 0.0012 20.9 1.0 26 13-38 8-34 (146)
419 PF08325 WLM: WLM domain; Int 20.9 54 0.0012 21.6 1.0 23 8-30 8-31 (186)
420 PRK11611 enhanced serine sensi 20.8 2.2E+02 0.0048 19.8 4.0 35 66-100 99-133 (246)
421 PF14226 DIOX_N: non-haem diox 20.7 88 0.0019 18.1 1.9 30 14-43 10-39 (116)
422 COG5440 Uncharacterized conser 20.7 1.2E+02 0.0025 19.7 2.4 23 72-94 6-28 (161)
423 PHA02517 putative transposase 20.6 83 0.0018 21.4 2.0 25 65-89 175-199 (277)
424 COG1041 Predicted DNA modifica 20.6 1.5E+02 0.0034 21.7 3.3 24 16-39 288-311 (347)
425 TIGR03366 HpnZ_proposed putati 20.5 1.3E+02 0.0027 20.5 2.8 23 19-41 199-221 (280)
426 TIGR00423 radical SAM domain p 20.5 1.2E+02 0.0026 21.3 2.8 22 71-92 283-304 (309)
427 cd05831 Ribosomal_P1 Ribosomal 20.4 1.3E+02 0.0028 17.9 2.5 25 65-89 12-36 (103)
428 PF14794 DUF4479: Domain of un 20.4 88 0.0019 17.3 1.7 15 74-88 54-68 (73)
429 cd04416 NDPk_TX NDP kinase dom 20.3 74 0.0016 19.5 1.5 22 72-93 15-36 (132)
430 cd00595 NDPk Nucleoside diphos 20.2 1.3E+02 0.0027 18.4 2.6 22 72-93 16-37 (133)
431 PF01728 FtsJ: FtsJ-like methy 20.2 1.2E+02 0.0026 19.2 2.5 22 18-39 119-140 (181)
432 cd04883 ACT_AcuB C-terminal AC 20.2 1.2E+02 0.0025 15.7 2.2 17 72-88 53-69 (72)
433 PF00334 NDK: Nucleoside dipho 20.1 1.2E+02 0.0027 18.4 2.5 22 72-93 16-37 (135)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.91 E-value=5.8e-24 Score=148.31 Aligned_cols=103 Identities=43% Similarity=0.624 Sum_probs=91.0
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC-CCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV-PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA 80 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~-~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll 80 (104)
+++++||||||+|++|.++|+||+++|+|||++++.|.+.|+. ...+..+......|+.|+..+++|++|+.+||+.++
T Consensus 239 aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~ 318 (342)
T KOG3178|consen 239 AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALL 318 (342)
T ss_pred eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcc
Confidence 5899999999999999999999999999999999999998863 222222344567999999988779999999999999
Q ss_pred HhCCCCceEEEEeCCCeEEEEEEC
Q 043826 81 TGAGFSGMSCERAIGNLWVMEFYK 104 (104)
Q Consensus 81 ~~aGf~~~~~~~~~~~~~vie~~~ 104 (104)
.++||...++.-.+-..++||++|
T Consensus 319 ~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 319 PEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hhhcCceeEEEeccCccchheeCC
Confidence 999999999999988999999987
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.86 E-value=2.7e-22 Score=135.40 Aligned_cols=79 Identities=30% Similarity=0.644 Sum_probs=67.7
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCC--CEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHH
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPED--GKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTL 79 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pg--g~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~l 79 (104)
+|++++|||+|+|++|.+||++++++|+|| |+|+|+|.+.++.+..+........+|++||+++ +|++||.+||++|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l 239 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL 239 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence 699999999999999999999999999999 9999999999888766543222257999999987 7999999999999
Q ss_pred HH
Q 043826 80 AT 81 (104)
Q Consensus 80 l~ 81 (104)
++
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 84
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.62 E-value=2.5e-15 Score=104.71 Aligned_cols=87 Identities=9% Similarity=0.159 Sum_probs=63.2
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhh-hhhhhhhhcCCCceecCHHHHHHHH
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNF-HFDVLMMIQRPDGKERTRHEFMTLA 80 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~-~~~l~m~~~~~~g~~rt~~e~~~ll 80 (104)
+|++++++|+|+++++.++|++++++|+|||+++|+|.+.++...+ ....... ...+.|+.. -...++.+||.+|+
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~ll 294 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYILGAGMPFS--VLGFKEQARYKEIL 294 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHHHcccccc--cccCCCHHHHHHHH
Confidence 5789999999999999999999999999999999999987655422 2111111 111122211 12235689999999
Q ss_pred HhCCCCceEEE
Q 043826 81 TGAGFSGMSCE 91 (104)
Q Consensus 81 ~~aGf~~~~~~ 91 (104)
++|||+.++++
T Consensus 295 ~~aGf~~v~~~ 305 (306)
T TIGR02716 295 ESLGYKDVTMV 305 (306)
T ss_pred HHcCCCeeEec
Confidence 99999998765
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.04 E-value=1.1e-10 Score=78.82 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=63.1
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh-----------------cCC
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-----------------QRP 66 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~-----------------~~~ 66 (104)
+...++|++++++..+++++++++|+|||++++.|.+.++++.... ....+.+.. ...
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 201 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALEN 201 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4567899999988999999999999999999999987655432111 011111000 000
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEeCCCeEEEEEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 103 (104)
.-...|.+++.+++++|||+.+++......++++-++
T Consensus 202 ~~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 202 VMRTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred cCCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 1235799999999999999987654433444444433
No 5
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.02 E-value=7.8e-10 Score=73.72 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=61.8
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG 82 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~ 82 (104)
-..+|++-+++|++..+.|++|.++|+|||.++|-|.+..... ..+|- .+++..||.+.|+++|++
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~ 191 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQ 191 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHH
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHH
Confidence 3578999999999999999999999999999999999976431 13443 357888999999999999
Q ss_pred CCCCceEEEEe
Q 043826 83 AGFSGMSCERA 93 (104)
Q Consensus 83 aGf~~~~~~~~ 93 (104)
||+++++...-
T Consensus 192 AGl~~v~~~~Q 202 (218)
T PF05891_consen 192 AGLRLVKEEKQ 202 (218)
T ss_dssp CT-EEEEEEE-
T ss_pred cCCEEEEeccc
Confidence 99999976554
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.87 E-value=1.9e-08 Score=69.01 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=61.4
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhh---hhhcCCC-----------ce
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVL---MMIQRPD-----------GK 69 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~---m~~~~~~-----------g~ 69 (104)
++..++|+++|. .++|+++++.|+|||++++.|...++.+-.+... ...+... .....+. ..
T Consensus 150 ~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 150 TMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 466789999875 7899999999999999999998765432111100 0001000 0000000 23
Q ss_pred ecCHHHHHHHHHhCCCCceEEEEeCC-CeEEEEE
Q 043826 70 ERTRHEFMTLATGAGFSGMSCERAIG-NLWVMEF 102 (104)
Q Consensus 70 ~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vie~ 102 (104)
.++.+|+.++++++||+.++.....+ ..++..+
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 46999999999999999998887764 3444433
No 7
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.85 E-value=1.2e-08 Score=65.23 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=59.7
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhh---hcCCC-----------ce
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMM---IQRPD-----------GK 69 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~---~~~~~-----------g~ 69 (104)
++..++|+++|. .+.|+++++.|+|||+++|.|...+++.-.... .......... ..... ..
T Consensus 49 ~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~ 124 (160)
T PLN02232 49 TMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSING 124 (160)
T ss_pred EecchhhcCCCH--HHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHH
Confidence 456789999875 799999999999999999999865432100000 0000000000 00000 12
Q ss_pred ecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEE
Q 043826 70 ERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEF 102 (104)
Q Consensus 70 ~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~ 102 (104)
..+.+|+.++++++||+.++..... +..++..+
T Consensus 125 f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 125 YLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred CcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 3588999999999999999877764 34455444
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.82 E-value=5e-08 Score=67.03 Aligned_cols=82 Identities=15% Similarity=0.262 Sum_probs=57.3
Q ss_pred eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826 5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG 84 (104)
Q Consensus 5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG 84 (104)
...++|++++++..++|+++++.|+|||++++.|...+...... . .+. ...... .-...+.++|.+++++||
T Consensus 123 s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~--~----~~~-~~~~~~-~~~~~~~~~~~~~l~~aG 194 (263)
T PTZ00098 123 SRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD--E----EFK-AYIKKR-KYTLIPIQEYGDLIKSCN 194 (263)
T ss_pred EhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH--H----HHH-HHHHhc-CCCCCCHHHHHHHHHHCC
Confidence 34677888877789999999999999999999998654321111 0 010 011000 122358899999999999
Q ss_pred CCceEEEEeC
Q 043826 85 FSGMSCERAI 94 (104)
Q Consensus 85 f~~~~~~~~~ 94 (104)
|+.++.....
T Consensus 195 F~~v~~~d~~ 204 (263)
T PTZ00098 195 FQNVVAKDIS 204 (263)
T ss_pred CCeeeEEeCc
Confidence 9999887654
No 9
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.78 E-value=8.8e-08 Score=63.91 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=64.6
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhh----hcCCC------------
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMM----IQRPD------------ 67 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~----~~~~~------------ 67 (104)
+...++|++++. ..+|+++.+.|+|||++++.|...+.... .......+...++ ....+
T Consensus 126 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (239)
T PRK00216 126 TIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESI 200 (239)
T ss_pred EEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHH
Confidence 456788988875 68899999999999999999986654321 0000000000000 00001
Q ss_pred ceecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826 68 GKERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK 104 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 104 (104)
...++.++|.+++++|||+.+++.... +..+++.++|
T Consensus 201 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 201 RAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578899999999999999998864 6788988876
No 10
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.73 E-value=2e-07 Score=61.63 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=62.5
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcC-------CC---------
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQR-------PD--------- 67 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~-------~~--------- 67 (104)
++..++|+.++. ..+|+++.+.|+|||++++.+...+... +... ....+.-.++... .+
T Consensus 111 ~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (223)
T TIGR01934 111 TIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANA--LLKK-FYKFYLKNVLPSIGGLISKNAEAYTYLPESI 185 (223)
T ss_pred EEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCch--hhHH-HHHHHHHHhhhhhhhhhcCCchhhHHHHHHH
Confidence 345678888764 6899999999999999999997654331 1100 0000100111000 00
Q ss_pred ceecCHHHHHHHHHhCCCCceEEEEeCC-CeEEEEEEC
Q 043826 68 GKERTRHEFMTLATGAGFSGMSCERAIG-NLWVMEFYK 104 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vie~~~ 104 (104)
....+.++|..+++++||+.+++.+... ...+++++|
T Consensus 186 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 186 RAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 1234788999999999999999998865 467888775
No 11
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.71 E-value=1.4e-07 Score=67.09 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=56.1
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG 82 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~ 82 (104)
.+...++|+|+|. .++|+++++.|+|||++++.+...++.. ..+ ...+..+ ...+.+|+.+++++
T Consensus 182 VIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~-------~~~t~eEl~~lL~~ 246 (340)
T PLN02490 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWM-------LFPKEEEYIEWFTK 246 (340)
T ss_pred EEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhc-------cCCCHHHHHHHHHH
Confidence 4567789999987 4789999999999999999876543221 111 1112211 12578999999999
Q ss_pred CCCCceEEEEeC
Q 043826 83 AGFSGMSCERAI 94 (104)
Q Consensus 83 aGf~~~~~~~~~ 94 (104)
+||+.+++....
T Consensus 247 aGF~~V~i~~i~ 258 (340)
T PLN02490 247 AGFKDVKLKRIG 258 (340)
T ss_pred CCCeEEEEEEcC
Confidence 999999988764
No 12
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.70 E-value=4.3e-08 Score=66.67 Aligned_cols=86 Identities=15% Similarity=0.073 Sum_probs=55.8
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhh-----------hhh-hcCCC-cee
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDV-----------LMM-IQRPD-GKE 70 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l-----------~m~-~~~~~-g~~ 70 (104)
++..++|++++++...++++++++|+|||.+++.|.+.+++...... ......+. .-. ....+ -..
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~ 208 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLT 208 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccc
Confidence 44568999998888999999999999999999999776554321110 00000000 000 00001 123
Q ss_pred cCHHHHHHHHHhCCCCceEE
Q 043826 71 RTRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~~~ 90 (104)
-|.++..+||++|||+.++.
T Consensus 209 ~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 209 DSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred CCHHHHHHHHHHcCchhHHH
Confidence 58899999999999997654
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.69 E-value=4.6e-09 Score=71.07 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=33.5
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhh----hhh--cC---------CC
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVL----MMI--QR---------PD 67 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~----m~~--~~---------~~ 67 (104)
.+++..||+.+|. .+.|+++++.|+|||+++|.|...|+.+- .. ....+.+. .+. .. ..
T Consensus 120 v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~---~~-~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~ 193 (233)
T PF01209_consen 120 VTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPL---LR-ALYKFYFKYILPLIGRLLSGDREAYRYLPE 193 (233)
T ss_dssp EEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHH---HH-HHHHH-------------------------
T ss_pred EEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCch---hh-ceeeeeeccccccccccccccccccccccc
Confidence 4567889999986 67999999999999999999998876531 00 00001110 000 00 01
Q ss_pred --ceecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826 68 --GKERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK 104 (104)
Q Consensus 68 --g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 104 (104)
.+..+.+|+.++++++||+.++..+.. +..++..++|
T Consensus 194 Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 194 SIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 123467899999999999999887764 5566666655
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.67 E-value=3.5e-07 Score=62.15 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=65.9
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhh-hhhcCC-----C--------
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVL-MMIQRP-----D-------- 67 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~-m~~~~~-----~-------- 67 (104)
++.++..||+.+|- .+.|+++++.|+|||++++.|+..|+.+.. ......+..+ .+-..+ +
T Consensus 122 ~vt~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~~---~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~ 196 (238)
T COG2226 122 AVTISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPVL---RKAYILYYFKYVLPLIGKLVAKDAEAYEYLA 196 (238)
T ss_pred EEEeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchhh---HHHHHHHHHHhHhhhhceeeecChHHHHHHH
Confidence 46788999999975 899999999999999999999987765322 1111222222 111110 0
Q ss_pred ---ceecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826 68 ---GKERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK 104 (104)
Q Consensus 68 ---g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 104 (104)
-+.-+.+++.++++++||+.+...... +...+.-+.|
T Consensus 197 eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 197 ESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 123467899999999999999855554 4455554443
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.65 E-value=2e-07 Score=62.34 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=62.4
Q ss_pred eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh-hhhhh----------------hhhhcCCC
Q 043826 5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN-FHFDV----------------LMMIQRPD 67 (104)
Q Consensus 5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~-~~~~l----------------~m~~~~~~ 67 (104)
+...+|+.++. .++|+++.+.|+|||++++.|...+..+ ...... ..+.. ..+.. ..
T Consensus 120 ~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~ 193 (231)
T TIGR02752 120 IGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE-ST 193 (231)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH-HH
Confidence 45678888776 6899999999999999999886543321 110000 00000 00000 01
Q ss_pred ceecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826 68 GKERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK 104 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 104 (104)
....+.+++.++++++||+.+++.... +..+++.++|
T Consensus 194 ~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 194 RDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 123578999999999999999998886 6788888876
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.64 E-value=8.8e-08 Score=60.17 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=55.3
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhc-CCCceecCHHHHHHHHHh
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ-RPDGKERTRHEFMTLATG 82 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~-~~~g~~rt~~e~~~ll~~ 82 (104)
+...+||+.+| ..++|+++++.|+|||.+++.+...+... +. ......+... ..+...+|.++|.+++++
T Consensus 83 ~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 153 (161)
T PF13489_consen 83 ICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPS-PR------SFLKWRYDRPYGGHVHFFSPDELRQLLEQ 153 (161)
T ss_dssp EEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHH-HH------HHHHCCGTCHHTTTTEEBBHHHHHHHHHH
T ss_pred hhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchh-hh------HHHhcCCcCccCceeccCCHHHHHHHHHH
Confidence 45689999997 58999999999999999999998764310 00 0011111100 025577899999999999
Q ss_pred CCCCceE
Q 043826 83 AGFSGMS 89 (104)
Q Consensus 83 aGf~~~~ 89 (104)
+||++++
T Consensus 154 ~G~~iv~ 160 (161)
T PF13489_consen 154 AGFEIVE 160 (161)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 9999875
No 17
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.62 E-value=4.1e-07 Score=62.42 Aligned_cols=79 Identities=13% Similarity=0.269 Sum_probs=55.7
Q ss_pred eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826 5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG 84 (104)
Q Consensus 5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG 84 (104)
...++|+++|. .++++++++.|+|||++++.+...... .+.. ...+..+.... .+...+.+++.++++++|
T Consensus 152 ~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~----~~~~~~~~~~~-~~~~~~~~e~~~~l~~aG 222 (272)
T PRK11873 152 SNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGE--LPEE----IRNDAELYAGC-VAGALQEEEYLAMLAEAG 222 (272)
T ss_pred EcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCC--CCHH----HHHhHHHHhcc-ccCCCCHHHHHHHHHHCC
Confidence 34578888765 679999999999999999999876432 1111 12223322211 345678999999999999
Q ss_pred CCceEEEE
Q 043826 85 FSGMSCER 92 (104)
Q Consensus 85 f~~~~~~~ 92 (104)
|..+++..
T Consensus 223 f~~v~i~~ 230 (272)
T PRK11873 223 FVDITIQP 230 (272)
T ss_pred CCceEEEe
Confidence 99987754
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.60 E-value=4.5e-07 Score=63.90 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=55.6
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA 83 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a 83 (104)
+...+||+++|. ...|++++++|+|||++++.+.+.+.+....... ....-.|.. .-...|.+++..|++++
T Consensus 193 ~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~n---v~flpS~~~L~~~L~~a 264 (314)
T TIGR00452 193 FSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMKN---VYFIPSVSALKNWLEKV 264 (314)
T ss_pred EEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhccc---cccCCCHHHHHHHHHHC
Confidence 345689999876 6899999999999999999887765433211000 000111110 01235899999999999
Q ss_pred CCCceEEEEe
Q 043826 84 GFSGMSCERA 93 (104)
Q Consensus 84 Gf~~~~~~~~ 93 (104)
||+.+++...
T Consensus 265 GF~~V~i~~~ 274 (314)
T TIGR00452 265 GFENFRILDV 274 (314)
T ss_pred CCeEEEEEec
Confidence 9999988764
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.59 E-value=6.4e-07 Score=63.29 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=55.3
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCC-ceecCHHHHHHHHHh
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD-GKERTRHEFMTLATG 82 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~-g~~rt~~e~~~ll~~ 82 (104)
+...++||.+|. ..+|++++++|+|||++++.+.+.+.+........ ..+ .. + .+ -..+|.+++.+|+++
T Consensus 194 ~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~--~~y-~~-~---~~~~~lps~~~l~~~L~~ 264 (322)
T PRK15068 194 FSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG--DRY-AK-M---RNVYFIPSVPALKNWLER 264 (322)
T ss_pred EECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch--hHH-hc-C---ccceeCCCHHHHHHHHHH
Confidence 345689998876 68999999999999999887766654432211000 000 01 1 01 123689999999999
Q ss_pred CCCCceEEEEe
Q 043826 83 AGFSGMSCERA 93 (104)
Q Consensus 83 aGf~~~~~~~~ 93 (104)
+||+.+++...
T Consensus 265 aGF~~i~~~~~ 275 (322)
T PRK15068 265 AGFKDVRIVDV 275 (322)
T ss_pred cCCceEEEEeC
Confidence 99999988765
No 20
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.59 E-value=7.1e-07 Score=59.27 Aligned_cols=98 Identities=18% Similarity=0.121 Sum_probs=77.2
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA 83 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a 83 (104)
+..|++|--+-+.+..+++.+.+.|+|||.|+++-+..-+..-.++ ....||...-..-+....|+.+++.++.+++
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 4578999999999999999999999999999999987654422111 2245776655433467889999999999999
Q ss_pred CCCceEEEEeCCCeEEEEEEC
Q 043826 84 GFSGMSCERAIGNLWVMEFYK 104 (104)
Q Consensus 84 Gf~~~~~~~~~~~~~vie~~~ 104 (104)
||+..+++.++.+.-++..+|
T Consensus 184 GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 184 GLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCccCcccccCCCCeEEEEeC
Confidence 999999999986665555554
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.51 E-value=6.5e-07 Score=65.89 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=56.2
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA 83 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a 83 (104)
+...++|+++|. .++|+++++.|+|||++++.|.........+. .... +. ..+...++.+++.++++++
T Consensus 337 ~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~--~~----~~g~~~~~~~~~~~~l~~a 405 (475)
T PLN02336 337 YSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPE---FAEY--IK----QRGYDLHDVQAYGQMLKDA 405 (475)
T ss_pred EECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHH---HHHH--HH----hcCCCCCCHHHHHHHHHHC
Confidence 445688888875 68999999999999999999986543321111 1111 11 1134568999999999999
Q ss_pred CCCceEEEEe
Q 043826 84 GFSGMSCERA 93 (104)
Q Consensus 84 Gf~~~~~~~~ 93 (104)
||+++++...
T Consensus 406 GF~~i~~~d~ 415 (475)
T PLN02336 406 GFDDVIAEDR 415 (475)
T ss_pred CCeeeeeecc
Confidence 9999977653
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=98.42 E-value=3.8e-06 Score=59.68 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=54.7
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCccc-chhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIES-KSNFHFDVLMMIQRPDGKERTRHEFMTLAT 81 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~-~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~ 81 (104)
+...++|+++|. .++++++++.|+|||+++|.+....... ...... .....++-...... .-...+.++|.++++
T Consensus 191 ~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~ 267 (340)
T PLN02244 191 WSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAE 267 (340)
T ss_pred EECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHH
Confidence 345688999875 6899999999999999999987542211 110000 00011110000000 111248899999999
Q ss_pred hCCCCceEEEEeC
Q 043826 82 GAGFSGMSCERAI 94 (104)
Q Consensus 82 ~aGf~~~~~~~~~ 94 (104)
++||+.+++....
T Consensus 268 ~aGf~~v~~~d~s 280 (340)
T PLN02244 268 SLGLQDIKTEDWS 280 (340)
T ss_pred HCCCCeeEeeeCc
Confidence 9999999887653
No 23
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.31 E-value=2.1e-06 Score=58.84 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=56.3
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh--hhhhh---------------hhhhc
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN--FHFDV---------------LMMIQ 64 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~--~~~~l---------------~m~~~ 64 (104)
.|.+..-+-+|+|. .+.|+++++.|+|||++.+.|+--.+++ + ...+. ..++. ..|+.
T Consensus 180 ~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~--~-l~~fy~~ysf~VlpvlG~~iagd~~sYqYLve 254 (296)
T KOG1540|consen 180 AYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENE--P-LKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVE 254 (296)
T ss_pred eEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccH--H-HHHHHHhhhhhhhchhhHhhhhhHhhhhhHHh
Confidence 58888999999986 7999999999999999999998544321 0 11111 11111 01110
Q ss_pred CCCceecCHHHHHHHHHhCCCCceE
Q 043826 65 RPDGKERTRHEFMTLATGAGFSGMS 89 (104)
Q Consensus 65 ~~~g~~rt~~e~~~ll~~aGf~~~~ 89 (104)
. =-+.-+.+|+..+.++|||+.+.
T Consensus 255 S-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 255 S-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred h-hhcCCCHHHHHHHHHHcCCcccc
Confidence 0 11345789999999999999987
No 24
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.27 E-value=4.3e-06 Score=56.98 Aligned_cols=85 Identities=13% Similarity=0.012 Sum_probs=49.3
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh--hhhh--hhhhhcCCCceecCHHHHHH
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN--FHFD--VLMMIQRPDGKERTRHEFMT 78 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~--~~~~--l~m~~~~~~g~~rt~~e~~~ 78 (104)
.+...++|+.+|. .++++++++.|+|||++++......+.+......... ..+. +.-.....+....+.+++.+
T Consensus 93 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 93 VVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred EEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 4567789988875 7899999999999999988642111111000000000 0010 00000011223468999999
Q ss_pred HHHhCCCCceE
Q 043826 79 LATGAGFSGMS 89 (104)
Q Consensus 79 ll~~aGf~~~~ 89 (104)
+|++|||++..
T Consensus 171 ~l~~aGf~v~~ 181 (255)
T PRK14103 171 LLTDAGCKVDA 181 (255)
T ss_pred HHHhCCCeEEE
Confidence 99999998543
No 25
>PRK04266 fibrillarin; Provisional
Probab=98.23 E-value=7.2e-06 Score=55.36 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=49.6
Q ss_pred cccccCChHH-HHHHHHHHHhhCCCCCEEEEE-eeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826 7 TILHDWNDEH-CLKLLKNCYKSIPEDGKVIVV-ELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG 84 (104)
Q Consensus 7 ~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~-d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG 84 (104)
.++|+.++++ ...+|+++++.|+|||+++|. ..- + .|... +.. +..++..++++++|
T Consensus 144 ~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~--------------~d~~~-----~~~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 144 VIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKAR-S--------------IDVTK-----DPK-EIFKEEIRKLEEGG 202 (226)
T ss_pred EEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEecc-c--------------ccCcC-----CHH-HHHHHHHHHHHHcC
Confidence 3568877654 456789999999999999994 320 0 01000 000 11245569999999
Q ss_pred CCceEEEEeCCC---eEEEEEE
Q 043826 85 FSGMSCERAIGN---LWVMEFY 103 (104)
Q Consensus 85 f~~~~~~~~~~~---~~vie~~ 103 (104)
|+.++.....+. +..+.++
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEEE
Confidence 999999887644 6665554
No 26
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.23 E-value=9.8e-06 Score=56.71 Aligned_cols=35 Identities=9% Similarity=0.198 Sum_probs=32.0
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIV 36 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i 36 (104)
++++.+.+|+++++++..+|++++++|+|||.+++
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 56777899999999999999999999999999986
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.21 E-value=3.9e-06 Score=59.37 Aligned_cols=86 Identities=8% Similarity=0.005 Sum_probs=54.6
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccc-hhhhhhhhhhhc-C-CCceecCHHHHHHH
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESK-SNFHFDVLMMIQ-R-PDGKERTRHEFMTL 79 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~-~~~~~~l~m~~~-~-~~g~~rt~~e~~~l 79 (104)
.+...+||+++|. ..+|+++++.|+|||.+++........ ..... ....+-...+-. + ...+.++.+|+.++
T Consensus 202 Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~l 276 (322)
T PLN02396 202 VLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMI 276 (322)
T ss_pred EEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHH
Confidence 3556799999987 689999999999999999887532110 00000 000000000100 0 01235799999999
Q ss_pred HHhCCCCceEEEEe
Q 043826 80 ATGAGFSGMSCERA 93 (104)
Q Consensus 80 l~~aGf~~~~~~~~ 93 (104)
++++||+++++..+
T Consensus 277 L~~aGf~i~~~~G~ 290 (322)
T PLN02396 277 LQRASVDVKEMAGF 290 (322)
T ss_pred HHHcCCeEEEEeee
Confidence 99999999988654
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.21 E-value=1e-05 Score=53.83 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=53.1
Q ss_pred eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826 5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG 84 (104)
Q Consensus 5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG 84 (104)
...++|+++|. ..+++++++.|+|||++++.+...+.. .+... .. ......+.++|.++++++|
T Consensus 73 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~-----~~--------~~~~~~s~~~~~~~l~~~G 136 (224)
T smart00828 73 GFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLL-SAIEH-----EE--------TTSYLVTREEWAELLARNN 136 (224)
T ss_pred hHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccC-ccccc-----cc--------cccccCCHHHHHHHHHHCC
Confidence 45678888774 799999999999999999998754321 11000 00 0111357899999999999
Q ss_pred CCceEEEEeC
Q 043826 85 FSGMSCERAI 94 (104)
Q Consensus 85 f~~~~~~~~~ 94 (104)
|+.++.....
T Consensus 137 f~~~~~~~~~ 146 (224)
T smart00828 137 LRVVEGVDAS 146 (224)
T ss_pred CeEEEeEECc
Confidence 9999887764
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.18 E-value=3.7e-06 Score=57.35 Aligned_cols=91 Identities=9% Similarity=-0.007 Sum_probs=54.5
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcc-cchhhhhhhhhh----hcCCCceecCHHHHH
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIE-SKSNFHFDVLMM----IQRPDGKERTRHEFM 77 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~-~~~~~~~~l~m~----~~~~~g~~rt~~e~~ 77 (104)
.++..++|+++|+ .++|+++++.|+|||++++.........-.... ..... ..-.+. .........+.+++.
T Consensus 116 V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~l~ 192 (255)
T PRK11036 116 ILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDY-VQAGMPKRKKRTLSPDYPLDPEQVY 192 (255)
T ss_pred EEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHH-HHhcCccccccCCCCCCCCCHHHHH
Confidence 3567889999876 589999999999999999876543210000000 00000 000000 000012235789999
Q ss_pred HHHHhCCCCceEEEEeCCC
Q 043826 78 TLATGAGFSGMSCERAIGN 96 (104)
Q Consensus 78 ~ll~~aGf~~~~~~~~~~~ 96 (104)
+|++++||+++++..+.+.
T Consensus 193 ~~l~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 193 QWLEEAGWQIMGKTGVRVF 211 (255)
T ss_pred HHHHHCCCeEeeeeeEEEE
Confidence 9999999999877765433
No 30
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.15 E-value=1.3e-06 Score=60.07 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=48.3
Q ss_pred EEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826 3 NCTLTILHDWND-EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT 81 (104)
Q Consensus 3 y~~~~vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~ 81 (104)
-++..+||+.+| ++...+++..+++|+|||.|+|.....+..+ ...+ ...+..-.. ...+..||.+|+.++|
T Consensus 154 vll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p---~~~~--~~~~~~~~~-~~~~~~Rs~~ei~~~f- 226 (267)
T PF04672_consen 154 VLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP---ERAE--ALEAVYAQA-GSPGRPRSREEIAAFF- 226 (267)
T ss_dssp EEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH---HHHH--HHHHHHHHC-CS----B-HHHHHHCC-
T ss_pred eeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH---HHHH--HHHHHHHcC-CCCceecCHHHHHHHc-
Confidence 478889999998 6799999999999999999999998664332 1111 111111111 2357889999999999
Q ss_pred hCCCCceE
Q 043826 82 GAGFSGMS 89 (104)
Q Consensus 82 ~aGf~~~~ 89 (104)
.||+.++
T Consensus 227 -~g~elve 233 (267)
T PF04672_consen 227 -DGLELVE 233 (267)
T ss_dssp -TTSEE-T
T ss_pred -CCCccCC
Confidence 5988663
No 31
>PRK08317 hypothetical protein; Provisional
Probab=98.14 E-value=2.4e-05 Score=51.92 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=52.5
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG 82 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~ 82 (104)
+..+++|+++|. ..+++++++.|+|||++++.+...+... .+............ ... .....++..++.+++++
T Consensus 92 ~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~ 166 (241)
T PRK08317 92 RSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WSD-HFADPWLGRRLPGLFRE 166 (241)
T ss_pred EEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH--HHh-cCCCCcHHHHHHHHHHH
Confidence 456788999875 6789999999999999999885322110 00000000011111 110 12233566789999999
Q ss_pred CCCCceEEEEe
Q 043826 83 AGFSGMSCERA 93 (104)
Q Consensus 83 aGf~~~~~~~~ 93 (104)
+||+.+++...
T Consensus 167 aGf~~~~~~~~ 177 (241)
T PRK08317 167 AGLTDIEVEPY 177 (241)
T ss_pred cCCCceeEEEE
Confidence 99998866543
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.02 E-value=2.3e-05 Score=57.74 Aligned_cols=72 Identities=10% Similarity=0.024 Sum_probs=54.8
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA 83 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a 83 (104)
+...++|+++|++..++|+++++.|+|||++++.|......... .+ . ......|+..+|.+++.++
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~---------~~---~--~~~~~~~~~~~~~~~f~~~ 173 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS---------KR---K--NNPTHYREPRFYTKVFKEC 173 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc---------cc---c--CCCCeecChHHHHHHHHHh
Confidence 34568999999989999999999999999999999765432111 00 0 1234557888999999999
Q ss_pred CCCceE
Q 043826 84 GFSGMS 89 (104)
Q Consensus 84 Gf~~~~ 89 (104)
||....
T Consensus 174 ~~~~~~ 179 (475)
T PLN02336 174 HTRDED 179 (475)
T ss_pred eeccCC
Confidence 998764
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.01 E-value=6.8e-05 Score=49.41 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=49.6
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA 83 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a 83 (104)
+...++|++++++..+++++++++|+|||++++.+.+.+++...+ . -. -...+.+|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--~----~~----------~~~~~~~el~~~~~-- 161 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--V----GF----------PFAFKEGELRRYYE-- 161 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--C----CC----------CCccCHHHHHHHhC--
Confidence 445688988988899999999999999999888776554331100 0 00 01247889999996
Q ss_pred CCCceEEE
Q 043826 84 GFSGMSCE 91 (104)
Q Consensus 84 Gf~~~~~~ 91 (104)
||+.+...
T Consensus 162 ~~~~~~~~ 169 (197)
T PRK11207 162 GWEMVKYN 169 (197)
T ss_pred CCeEEEee
Confidence 89877653
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.90 E-value=0.00016 Score=47.53 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=49.2
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA 83 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a 83 (104)
+...++|++++++...+++++++.|+|||++++.+...++.. +.. .. .....+.+|+.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~-~~~-------~~--------~~~~~~~~el~~~f~-- 160 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY-PCH-------MP--------FSFTFKEDELRQYYA-- 160 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC-CCC-------CC--------cCccCCHHHHHHHhC--
Confidence 345678999888889999999999999999888876543221 100 00 011257889999994
Q ss_pred CCCceEEE
Q 043826 84 GFSGMSCE 91 (104)
Q Consensus 84 Gf~~~~~~ 91 (104)
+|++....
T Consensus 161 ~~~~~~~~ 168 (195)
T TIGR00477 161 DWELLKYN 168 (195)
T ss_pred CCeEEEee
Confidence 68877665
No 35
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.82 E-value=7.8e-05 Score=49.95 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=51.1
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh--hhhhhhhhhc--CCCceecCHHHHHH
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN--FHFDVLMMIQ--RPDGKERTRHEFMT 78 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~--~~~~l~m~~~--~~~g~~rt~~e~~~ 78 (104)
.++.+++++.++. ..+|+++.+.|+|||++++.... .. ........ ...-...... ...+...+.++|.+
T Consensus 118 Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (233)
T PRK05134 118 VTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLN--RN--LKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAA 191 (233)
T ss_pred EEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecC--CC--hHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHH
Confidence 3556778888775 57899999999999999877532 11 10000000 0000000000 00123458899999
Q ss_pred HHHhCCCCceEEEE
Q 043826 79 LATGAGFSGMSCER 92 (104)
Q Consensus 79 ll~~aGf~~~~~~~ 92 (104)
+++++||+.++...
T Consensus 192 ~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 192 WLRQAGLEVQDITG 205 (233)
T ss_pred HHHHCCCeEeeeee
Confidence 99999999997754
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.80 E-value=3.1e-05 Score=53.68 Aligned_cols=85 Identities=12% Similarity=0.163 Sum_probs=54.5
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~ 86 (104)
.++.+.+++.-...++++.+.|+|||++++.....++.+..........++.-. .+++|...+.+++...++++||+
T Consensus 135 ~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky---iFPgg~lps~~~~~~~~~~~~l~ 211 (273)
T PF02353_consen 135 EMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY---IFPGGYLPSLSEILRAAEDAGLE 211 (273)
T ss_dssp SEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH---TSTTS---BHHHHHHHHHHTT-E
T ss_pred echhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe---eCCCCCCCCHHHHHHHHhcCCEE
Confidence 456777777788999999999999999999887765432110000000111111 24788889999999999999999
Q ss_pred ceEEEEeC
Q 043826 87 GMSCERAI 94 (104)
Q Consensus 87 ~~~~~~~~ 94 (104)
+..+...+
T Consensus 212 v~~~~~~~ 219 (273)
T PF02353_consen 212 VEDVENLG 219 (273)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcC
Confidence 98877653
No 37
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.78 E-value=7.9e-05 Score=49.50 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=51.1
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh-cCC-----CceecCHHHHH
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-QRP-----DGKERTRHEFM 77 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~-~~~-----~g~~rt~~e~~ 77 (104)
+..+++|+.++. ..+|+++.+.|+|||.+++.....+. ... .....+-.... ..+ .....+..++.
T Consensus 117 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 188 (224)
T TIGR01983 117 TCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTP---KSY---LLAIVGAEYILRIVPKGTHDWEKFIKPSELT 188 (224)
T ss_pred EehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCc---hHH---HHHHHhhhhhhhcCCCCcCChhhcCCHHHHH
Confidence 456678888776 58999999999999999887642111 000 00000000010 000 11234788999
Q ss_pred HHHHhCCCCceEEEEe
Q 043826 78 TLATGAGFSGMSCERA 93 (104)
Q Consensus 78 ~ll~~aGf~~~~~~~~ 93 (104)
++++++||+++++...
T Consensus 189 ~~l~~~G~~i~~~~~~ 204 (224)
T TIGR01983 189 SWLESAGLRVKDVKGL 204 (224)
T ss_pred HHHHHcCCeeeeeeeE
Confidence 9999999999887643
No 38
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.56 E-value=0.0005 Score=48.40 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=55.4
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCc--ccchhhhhhhhhhhcCCC-ceecCHHHHHHHH
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSI--ESKSNFHFDVLMMIQRPD-GKERTRHEFMTLA 80 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~--~~~~~~~~~l~m~~~~~~-g~~rt~~e~~~ll 80 (104)
++-.||.|..++ ...|+.++++|+|||.+++--.+++.+..... ..+++ . | .| -..-|...+..|+
T Consensus 187 F~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~-m---~nv~FiPs~~~L~~wl 255 (315)
T PF08003_consen 187 FSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-----K-M---RNVWFIPSVAALKNWL 255 (315)
T ss_pred EEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-----C-C---CceEEeCCHHHHHHHH
Confidence 445678787776 89999999999999999776666665432210 11110 1 1 12 2345899999999
Q ss_pred HhCCCCceEEEEe
Q 043826 81 TGAGFSGMSCERA 93 (104)
Q Consensus 81 ~~aGf~~~~~~~~ 93 (104)
+.+||+.+++...
T Consensus 256 ~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 256 ERAGFKDVRCVDV 268 (315)
T ss_pred HHcCCceEEEecC
Confidence 9999999999875
No 39
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.54 E-value=0.00012 Score=50.40 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=33.3
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
.+.+++||++++++..+++++++++|+|||.+++-..
T Consensus 207 I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 207 IFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 4567899999999999999999999999999998764
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.53 E-value=0.001 Score=46.28 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=49.1
Q ss_pred eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826 5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG 84 (104)
Q Consensus 5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG 84 (104)
...++|+.++++...+++++.+.|+|||.++++.....++...+ . +.....+.+|+.+++ .+
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~--------p~~~~~~~~el~~~~--~~ 251 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M--------PFSFTFKEGELKDYY--QD 251 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------C--------CCCcccCHHHHHHHh--CC
Confidence 44589999988899999999999999999888765543321111 0 011225788999999 56
Q ss_pred CCceEEE
Q 043826 85 FSGMSCE 91 (104)
Q Consensus 85 f~~~~~~ 91 (104)
|++++..
T Consensus 252 ~~i~~~~ 258 (287)
T PRK12335 252 WEIVKYN 258 (287)
T ss_pred CEEEEEe
Confidence 8888764
No 41
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00026 Score=48.30 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCce--ecCHHHHHHHHHhCC
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGK--ERTRHEFMTLATGAG 84 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~--~rt~~e~~~ll~~aG 84 (104)
.+|-..+.+.-...++++++.|+|||.|++.|.-..+-..-. ......++.+..+--+|.+ -.+.++.++||.+||
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR--F~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR--FKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh--ccCCceeecceEEccCCceeeeccHHHHHHHHHhcc
Confidence 455566778889999999999999999999998654331100 0001223333333222222 258999999999999
Q ss_pred CCceEE
Q 043826 85 FSGMSC 90 (104)
Q Consensus 85 f~~~~~ 90 (104)
|..++.
T Consensus 230 f~~~~~ 235 (264)
T KOG2361|consen 230 FEEVQL 235 (264)
T ss_pred cchhcc
Confidence 997754
No 42
>PRK06922 hypothetical protein; Provisional
Probab=97.48 E-value=0.0002 Score=54.99 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=35.6
Q ss_pred EEEeccccccC-----------ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826 2 INCTLTILHDW-----------NDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV 44 (104)
Q Consensus 2 ~y~~~~vlH~~-----------~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~ 44 (104)
+++++.++|+| ++++..++|++++++|+|||++++.|...+++
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~ 543 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTED 543 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCc
Confidence 35678889986 35678999999999999999999999766543
No 43
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.00075 Score=45.32 Aligned_cols=76 Identities=25% Similarity=0.206 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccch-hhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKS-NFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~-~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
++.++.|+++.+.|+|||+++.+|.+..+...- .+. ....+-.--. ...|...|.+.|+ .+++|-|+..+..+.
T Consensus 159 e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~---n~i~q~v~ep~~~~-~~dGC~ltrd~~e-~Leda~f~~~~~kr~ 233 (252)
T KOG4300|consen 159 EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW---NRILQQVAEPLWHL-ESDGCVLTRDTGE-LLEDAEFSIDSCKRF 233 (252)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEecccccchHH---HHHHHHHhchhhhe-eccceEEehhHHH-Hhhhcccccchhhcc
Confidence 446999999999999999999999987655321 111 0111110011 2368888885554 566799999988877
Q ss_pred CC
Q 043826 94 IG 95 (104)
Q Consensus 94 ~~ 95 (104)
..
T Consensus 234 ~~ 235 (252)
T KOG4300|consen 234 NF 235 (252)
T ss_pred cC
Confidence 54
No 44
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.40 E-value=0.00011 Score=41.81 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=27.5
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIV 36 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i 36 (104)
.+..+++|++ ++..++++++++.|+|||+++|
T Consensus 64 v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 4667788888 5568999999999999999986
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.35 E-value=0.0014 Score=47.52 Aligned_cols=80 Identities=6% Similarity=0.022 Sum_probs=55.5
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCC
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGF 85 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf 85 (104)
..++|+.++.....+++++++.|+|||++++.+...+....... ...+- . .+++|...+.+++.+.++ .||
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~-----~~i~~--y-ifp~g~lps~~~i~~~~~-~~~ 305 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVD-----PWINK--Y-IFPNGCLPSVRQIAQASE-GLF 305 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCC-----CCcee--e-ecCCCcCCCHHHHHHHHH-CCc
Confidence 45778888877789999999999999999998865443321110 11111 1 135777788999888866 689
Q ss_pred CceEEEEeC
Q 043826 86 SGMSCERAI 94 (104)
Q Consensus 86 ~~~~~~~~~ 94 (104)
.+.++...+
T Consensus 306 ~v~d~~~~~ 314 (383)
T PRK11705 306 VMEDWHNFG 314 (383)
T ss_pred EEEEEecCh
Confidence 888776544
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.00078 Score=46.99 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=60.2
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCc
Q 043826 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSG 87 (104)
Q Consensus 8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 87 (104)
++++...+.-...++++++.|+|||+++++....++.+.. . ...+.. --.+++|...|..+..+...++||.+
T Consensus 146 mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~---~~~~i~---~yiFPgG~lPs~~~i~~~~~~~~~~v 218 (283)
T COG2230 146 MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-R---FPDFID---KYIFPGGELPSISEILELASEAGFVV 218 (283)
T ss_pred hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-c---chHHHH---HhCCCCCcCCCHHHHHHHHHhcCcEE
Confidence 5667777777899999999999999999999877665431 1 111111 11257999999999999999999999
Q ss_pred eEEEEeC
Q 043826 88 MSCERAI 94 (104)
Q Consensus 88 ~~~~~~~ 94 (104)
..+...+
T Consensus 219 ~~~~~~~ 225 (283)
T COG2230 219 LDVESLR 225 (283)
T ss_pred ehHhhhc
Confidence 8776654
No 47
>PRK06202 hypothetical protein; Provisional
Probab=97.31 E-value=0.0013 Score=44.15 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=51.2
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhh---hcCCC-----ceecCHH
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMM---IQRPD-----GKERTRH 74 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~---~~~~~-----g~~rt~~ 74 (104)
.+...++|+.+|++..++|+++++.++ |.+++.|...+.. . .. .......... ....+ -+.+|.+
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~-~~-~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~ 205 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---A-YA-LFWAGTRLLSRSSFVHTDGLLSVRRSYTPA 205 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---H-HH-HHHHHHHHhccCceeeccchHHHHhhcCHH
Confidence 456779999999988899999999987 5666666543311 0 00 0000000000 00001 1357899
Q ss_pred HHHHHHHhCCCCceEEEEe
Q 043826 75 EFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 75 e~~~ll~~aGf~~~~~~~~ 93 (104)
|+.+++++ ||++....+.
T Consensus 206 el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 206 ELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHHHhhC-CCeEEeccce
Confidence 99999999 9998876644
No 48
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.27 E-value=0.0019 Score=42.92 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=49.6
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhh-h----hcCCCceecCHHHHHH
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLM-M----IQRPDGKERTRHEFMT 78 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m-~----~~~~~g~~rt~~e~~~ 78 (104)
+...++|++++++...+++++.+.++ |+.++.. .+..+ .. ....... . .........+.++|.+
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~---~~~~~--~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 200 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTF---APYTP--LL-----ALLHWIGGLFPGPSRTTRIYPHREKGIRR 200 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEE---CCccH--HH-----HHHHHhccccCCccCCCCccccCHHHHHH
Confidence 45678889999999999999998664 3333332 12111 00 0011000 0 0011234468899999
Q ss_pred HHHhCCCCceEEEEeCC
Q 043826 79 LATGAGFSGMSCERAIG 95 (104)
Q Consensus 79 ll~~aGf~~~~~~~~~~ 95 (104)
+++++||++.++.....
T Consensus 201 ~l~~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 201 ALAAAGFKVVRTERISS 217 (230)
T ss_pred HHHHCCCceEeeeeccc
Confidence 99999999999887653
No 49
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.16 E-value=0.0031 Score=41.81 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=49.3
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG 82 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~ 82 (104)
.+...++|+.+|. .++|+++++.|+|||.+++.+...+.. ... .....- .+....+.++|.+++.+
T Consensus 102 vi~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~---~~~---~~~~~~------~~~~~~~~~~~~~~l~~ 167 (240)
T TIGR02072 102 IVSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTL---HEL---RQSFGQ------HGLRYLSLDELKALLKN 167 (240)
T ss_pred EEEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCH---HHH---HHHHHH------hccCCCCHHHHHHHHHH
Confidence 3456678877664 689999999999999999886433211 000 001110 13445688999999998
Q ss_pred CCCCceEEEE
Q 043826 83 AGFSGMSCER 92 (104)
Q Consensus 83 aGf~~~~~~~ 92 (104)
+ |+...+..
T Consensus 168 ~-f~~~~~~~ 176 (240)
T TIGR02072 168 S-FELLTLEE 176 (240)
T ss_pred h-cCCcEEEE
Confidence 8 88776543
No 50
>PTZ00146 fibrillarin; Provisional
Probab=97.13 E-value=0.0064 Score=42.70 Aligned_cols=75 Identities=12% Similarity=-0.013 Sum_probs=44.3
Q ss_pred ccccCChH-HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826 8 ILHDWNDE-HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86 (104)
Q Consensus 8 vlH~~~d~-~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~ 86 (104)
|++|..+. +...++.++.+.|+|||+++|.- -..+.... .+.... .+ +|. ++|+++||+
T Consensus 206 V~~Dva~pdq~~il~~na~r~LKpGG~~vI~i-ka~~id~g---------~~pe~~--------f~-~ev-~~L~~~GF~ 265 (293)
T PTZ00146 206 IFADVAQPDQARIVALNAQYFLKNGGHFIISI-KANCIDST---------AKPEVV--------FA-SEV-QKLKKEGLK 265 (293)
T ss_pred EEEeCCCcchHHHHHHHHHHhccCCCEEEEEE-eccccccC---------CCHHHH--------HH-HHH-HHHHHcCCc
Confidence 34444433 35567779999999999999931 11111100 000000 12 345 889999999
Q ss_pred ceEEEEeCC---CeEEEEE
Q 043826 87 GMSCERAIG---NLWVMEF 102 (104)
Q Consensus 87 ~~~~~~~~~---~~~vie~ 102 (104)
.++...+.+ .++++.+
T Consensus 266 ~~e~v~L~Py~~~h~~v~~ 284 (293)
T PTZ00146 266 PKEQLTLEPFERDHAVVIG 284 (293)
T ss_pred eEEEEecCCccCCcEEEEE
Confidence 999988864 4555544
No 51
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.13 E-value=0.0014 Score=46.36 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=46.2
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCC------ceecCHHHHH
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD------GKERTRHEFM 77 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~------g~~rt~~e~~ 77 (104)
+...++||++++....+++++.+ +.+| .++|.. .+... .. ..+.. ..-.+++ ....+.++++
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~--~p~~~---~~----~~l~~-~g~~~~g~~~~~r~y~~s~eel~ 284 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISF--APKTL---YY----DILKR-IGELFPGPSKATRAYLHAEADVE 284 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEe--CCcch---HH----HHHHH-HHhhcCCCCcCceeeeCCHHHHH
Confidence 45668888999888888988885 4554 444422 22211 00 00000 0000111 1234899999
Q ss_pred HHHHhCCCCceEEEEeCC
Q 043826 78 TLATGAGFSGMSCERAIG 95 (104)
Q Consensus 78 ~ll~~aGf~~~~~~~~~~ 95 (104)
++++++||++.+......
T Consensus 285 ~lL~~AGf~v~~~~~~~~ 302 (315)
T PLN02585 285 RALKKAGWKVARREMTAT 302 (315)
T ss_pred HHHHHCCCEEEEEEEeec
Confidence 999999999886655443
No 52
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.12 E-value=0.0044 Score=43.50 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=58.7
Q ss_pred EEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCC-----ceecCHHHH
Q 043826 3 NCTLTILHDWNDEH-CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD-----GKERTRHEF 76 (104)
Q Consensus 3 y~~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~-----g~~rt~~e~ 76 (104)
-+.+-+.--++|.+ ....|+.+++++.|||.++-.-.-. .|.-..++ .-+ .. .-+ -+.||.+|.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw--HPQle~IA-----r~L--ts-Hr~g~~WvMRrRsq~Em 282 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW--HPQLEMIA-----RVL--TS-HRDGKAWVMRRRSQAEM 282 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC--CcchHHHH-----HHH--hc-ccCCCceEEEecCHHHH
Confidence 35566677788876 5668999999999999997655322 22111111 111 10 001 256999999
Q ss_pred HHHHHhCCCCceEEEEe-CCCeEEEEEEC
Q 043826 77 MTLATGAGFSGMSCERA-IGNLWVMEFYK 104 (104)
Q Consensus 77 ~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 104 (104)
.+|+++|||+-++..-- .+-++|--++|
T Consensus 283 D~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 283 DQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999996654433 35677766654
No 53
>PLN03075 nicotianamine synthase; Provisional
Probab=97.10 E-value=0.00065 Score=47.68 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=30.4
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
+|.+++|+|+.++..++|+++++.|+|||.+++--
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 45559999988888999999999999999997654
No 54
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.08 E-value=0.0021 Score=42.74 Aligned_cols=83 Identities=8% Similarity=-0.039 Sum_probs=49.3
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh--cCCCceecCHHHHHHHHH
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI--QRPDGKERTRHEFMTLAT 81 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~--~~~~g~~rt~~e~~~ll~ 81 (104)
+...++|++++++..++++++.+.+++++.+.+ .+.. . .... ...+.-.... ...+-..++.+++.++++
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~----~~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTF----APKT--A-WLAF-LKMIGELFPGSSRATSAYLHPMTDLERALG 195 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE----CCCc--h-HHHH-HHHHHhhCcCcccccceEEecHHHHHHHHH
Confidence 445678889888888999999998876533322 1211 1 0000 0011100000 001224468999999999
Q ss_pred hCCCCceEEEEeC
Q 043826 82 GAGFSGMSCERAI 94 (104)
Q Consensus 82 ~aGf~~~~~~~~~ 94 (104)
++||+++......
T Consensus 196 ~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 196 ELGWKIVREGLVS 208 (219)
T ss_pred HcCceeeeeeccc
Confidence 9999999887654
No 55
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.06 E-value=0.00017 Score=45.36 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=46.4
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG 82 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~ 82 (104)
.+...++|+.++. ..+++++.+.|+|||++++.+....+.-.. ....... +..........+. +.++|..|+++
T Consensus 77 I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 150 (152)
T PF13847_consen 77 IISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPE-QLEELMN-LYSEVWSMIYIGN--DKEEWKYILEE 150 (152)
T ss_dssp EEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHH-HHHHHHH-HHHHHHHHCC-----CCCGHHHHHHH
T ss_pred EEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHH-HHHHHHH-HHHHHhhhhhccc--CHHHHHHHHHh
Confidence 3456688999887 689999999999999999999873221000 0000000 1111111111122 78899999999
Q ss_pred CC
Q 043826 83 AG 84 (104)
Q Consensus 83 aG 84 (104)
||
T Consensus 151 ag 152 (152)
T PF13847_consen 151 AG 152 (152)
T ss_dssp TT
T ss_pred cC
Confidence 98
No 56
>PRK05785 hypothetical protein; Provisional
Probab=97.04 E-value=0.0052 Score=41.41 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=54.7
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhh---hhhhh--hcCCCc----------
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHF---DVLMM--IQRPDG---------- 68 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~---~l~m~--~~~~~g---------- 68 (104)
+....||+++|. .+.|+++++.|+| .++++|...|+.+- .......+ .+..+ ....+.
T Consensus 115 ~~~~~l~~~~d~--~~~l~e~~RvLkp--~~~ile~~~p~~~~---~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si 187 (226)
T PRK05785 115 MSSFALHASDNI--EKVIAEFTRVSRK--QVGFIAMGKPDNVI---KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIY 187 (226)
T ss_pred EecChhhccCCH--HHHHHHHHHHhcC--ceEEEEeCCCCcHH---HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 445678998876 6899999999999 45567765443321 00000000 00000 011111
Q ss_pred -eecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826 69 -KERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK 104 (104)
Q Consensus 69 -~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 104 (104)
...+.+++.++++++| ..++..... +..++..++|
T Consensus 188 ~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 188 ERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 2237799999999984 667777765 5567777665
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.03 E-value=0.0063 Score=39.24 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeCCC
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGN 96 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 96 (104)
..++|+++.+.|+|||++++++.... ...++.++++++||+...+...+.+
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChHHHHHHHHhCCCeEEEEEEeecC
Confidence 46789999999999999999873221 1457788999999999999888877
Q ss_pred eEEEEEEC
Q 043826 97 LWVMEFYK 104 (104)
Q Consensus 97 ~~vie~~~ 104 (104)
+--++++|
T Consensus 170 ~~~~~~~~ 177 (179)
T TIGR00537 170 FEELFAIK 177 (179)
T ss_pred ceEEEEEE
Confidence 77777665
No 58
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.98 E-value=0.00093 Score=46.74 Aligned_cols=37 Identities=8% Similarity=0.115 Sum_probs=32.5
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
-+.+|+|.+++++...+++++++++|+|||.|++-..
T Consensus 227 I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 227 IFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred eeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 3567899999999999999999999999998877653
No 59
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.89 E-value=0.0071 Score=41.10 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=45.6
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh-----hhhhhhhhhc-CCCceecCHHHH
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN-----FHFDVLMMIQ-RPDGKERTRHEF 76 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~-----~~~~l~m~~~-~~~g~~rt~~e~ 76 (104)
.+...++|..+|. .+++++++++|+|||++++.- +++...+...... ..+...+... ...+...+..++
T Consensus 97 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 171 (258)
T PRK01683 97 IFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAY 171 (258)
T ss_pred EEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHH
Confidence 3456788877775 689999999999999998852 2222111100000 0001000000 001233577899
Q ss_pred HHHHHhCCCCc
Q 043826 77 MTLATGAGFSG 87 (104)
Q Consensus 77 ~~ll~~aGf~~ 87 (104)
.+++.++|+.+
T Consensus 172 ~~~l~~~g~~v 182 (258)
T PRK01683 172 YDALAPAACRV 182 (258)
T ss_pred HHHHHhCCCce
Confidence 99999999864
No 60
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.64 E-value=0.0017 Score=43.00 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=31.9
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
+-+.+|||-.++++...+++++++++|+|||.|++-..
T Consensus 139 ~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 139 LIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp EEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred EEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 34789999999999999999999999999999988764
No 61
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.58 E-value=0.0032 Score=37.11 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=25.5
Q ss_pred ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 8 ILHDWND-EHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 8 vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
.+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4554544 578999999999999999999875
No 62
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.57 E-value=0.034 Score=37.22 Aligned_cols=67 Identities=10% Similarity=0.045 Sum_probs=46.3
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG 84 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG 84 (104)
+.++|+.+.+.....++++.++|+|||++++.-...++.. .+|+ ...+.+|+.++|. .+
T Consensus 120 ~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp-------------------~~~~~~eL~~~f~-~~ 179 (213)
T TIGR03840 120 RAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPP-------------------FSVSPAEVEALYG-GH 179 (213)
T ss_pred chhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcC-------------------CCCCHHHHHHHhc-CC
Confidence 4567899999889999999999999999877765443221 1110 1247888988886 35
Q ss_pred CCceEEEE
Q 043826 85 FSGMSCER 92 (104)
Q Consensus 85 f~~~~~~~ 92 (104)
|.+..+..
T Consensus 180 ~~i~~~~~ 187 (213)
T TIGR03840 180 YEIELLES 187 (213)
T ss_pred ceEEEEee
Confidence 65554443
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.41 E-value=0.04 Score=37.55 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 94 (104)
+....+++++.+.|+|||++++.+...+ ..+++.+.+++.||+..++...+
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEEeC
Confidence 4456889999999999999998643211 24577888999999999887776
Q ss_pred CCeEEE
Q 043826 95 GNLWVM 100 (104)
Q Consensus 95 ~~~~vi 100 (104)
...+++
T Consensus 241 ~W~~~~ 246 (250)
T PRK00517 241 EWVALV 246 (250)
T ss_pred CEEEEE
Confidence 555554
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.36 E-value=0.0045 Score=41.11 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=32.6
Q ss_pred EEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 2 INCTLTILHDWND-EHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 2 ~y~~~~vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
+.+++-|+|.++| ++....++++.++|+|||.+++...
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3567889999987 6789999999999999999999886
No 65
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.33 E-value=0.0077 Score=42.79 Aligned_cols=36 Identities=6% Similarity=0.145 Sum_probs=33.2
Q ss_pred CEEEeccccccCChHHHHHHHHHHHh-hCCCCCEEEE
Q 043826 1 CINCTLTILHDWNDEHCLKLLKNCYK-SIPEDGKVIV 36 (104)
Q Consensus 1 ~~y~~~~vlH~~~d~~~~~iL~~~~~-aL~pgg~l~i 36 (104)
+++++.+.+.+++++++..+|+++++ .|.||+.++|
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 47888999999999999999999999 9999988777
No 66
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.23 E-value=0.025 Score=39.11 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=44.4
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC------CCC--CCCcccchhhhhhhhhhhcCCCceecCHHHHHH
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP------EVP--NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMT 78 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~------~~~--~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ 78 (104)
|+|-.-.+ ...+|+.++++|+|+|++++.= +.| .++ ..++. ...++ .+.+-+-..+.+-+
T Consensus 159 NvLDRc~~--P~~LL~~i~~~l~p~G~lilAv-VlP~~pyVE~~~g~~~~P~----e~l~~-----~g~~~E~~v~~l~~ 226 (265)
T PF05219_consen 159 NVLDRCDR--PLTLLRDIRRALKPNGRLILAV-VLPFRPYVEFGGGKSNRPS----ELLPV-----KGATFEEQVSSLVN 226 (265)
T ss_pred hhhhccCC--HHHHHHHHHHHhCCCCEEEEEE-EecccccEEcCCCCCCCch----hhcCC-----CCCcHHHHHHHHHH
Confidence 45544434 4899999999999999997754 222 111 11111 11221 11111112233447
Q ss_pred HHHhCCCCceEEEEeC
Q 043826 79 LATGAGFSGMSCERAI 94 (104)
Q Consensus 79 ll~~aGf~~~~~~~~~ 94 (104)
.|+.+||++++..+++
T Consensus 227 v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 227 VFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHhcCCEEEEEeccC
Confidence 8899999999998875
No 67
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.22 E-value=0.063 Score=36.07 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=45.7
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC-CCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV-PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG 84 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~-~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG 84 (104)
+.++|+.+.+.-.+.++++.++|+|||+++++-...++. ..+|+ ...|.+|+.+++. -+
T Consensus 123 ~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp-------------------~~~~~~el~~~~~-~~ 182 (218)
T PRK13255 123 RAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPP-------------------FSVSDEEVEALYA-GC 182 (218)
T ss_pred hHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCC-------------------CCCCHHHHHHHhc-CC
Confidence 456799999999999999999999999866544433322 11111 1247889999985 33
Q ss_pred CCceEEEE
Q 043826 85 FSGMSCER 92 (104)
Q Consensus 85 f~~~~~~~ 92 (104)
|.+..+..
T Consensus 183 ~~i~~~~~ 190 (218)
T PRK13255 183 FEIELLER 190 (218)
T ss_pred ceEEEeee
Confidence 66665554
No 68
>PRK14968 putative methyltransferase; Provisional
Probab=96.21 E-value=0.065 Score=34.30 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC--
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI-- 94 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-- 94 (104)
...+++++.+.|+|||.+++... .. ...+++.+++.++||+...+....
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~---~~--------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQS---SL--------------------------TGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEc---cc--------------------------CCHHHHHHHHHHCCCeeeeeeecccC
Confidence 46789999999999999887531 00 123567889999999988765543
Q ss_pred -CCeEEEEEEC
Q 043826 95 -GNLWVMEFYK 104 (104)
Q Consensus 95 -~~~~vie~~~ 104 (104)
....+++++|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 3344555554
No 69
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.16 E-value=0.027 Score=37.65 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
...+.++-+.++++|+|||.++|.|......... .|-. --..++.+-..+-.+.+||+..-...+
T Consensus 142 ~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---------~dt~------~~~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 142 PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---------SDTI------TLHRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred cchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh---------hhhh------hhcccChHHHHHHHHhhcceeeeeehh
Confidence 4568899999999999999999999987654221 1110 011145678888899999998755544
No 70
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.11 E-value=0.032 Score=37.79 Aligned_cols=72 Identities=10% Similarity=0.046 Sum_probs=43.5
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~ 86 (104)
..+|..+|. .++|+++++.|+|||.+++.....+.- ++........+. . .......+.+++.+++.+.|++
T Consensus 111 ~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~el~~~~~~~~~--~--~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 111 LAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSL---PELHQAWQAVDE--R--PHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred chhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCch---HHHHHHHHHhcc--C--CccccCCCHHHHHHHHHhCCce
Confidence 355544453 789999999999999999877543221 111100000110 0 0012346889999999988876
Q ss_pred c
Q 043826 87 G 87 (104)
Q Consensus 87 ~ 87 (104)
.
T Consensus 182 ~ 182 (251)
T PRK10258 182 H 182 (251)
T ss_pred e
Confidence 4
No 71
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.01 E-value=0.0066 Score=41.45 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=53.7
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhh-hhhcCCCc-----eecCHHHHH
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVL-MMIQRPDG-----KERTRHEFM 77 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~-m~~~~~~g-----~~rt~~e~~ 77 (104)
+.-.||+|.+|+ ..++++|.+-++|||.+++...... . .+.....+... .+.+.+.| +...++|..
T Consensus 129 ~cmEVlEHv~dp--~~~~~~c~~lvkP~G~lf~STinrt----~--ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~ 200 (243)
T COG2227 129 TCMEVLEHVPDP--ESFLRACAKLVKPGGILFLSTINRT----L--KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELI 200 (243)
T ss_pred EEhhHHHccCCH--HHHHHHHHHHcCCCcEEEEeccccC----H--HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHH
Confidence 445689999998 4599999999999999988775421 1 11111111110 11112333 456778999
Q ss_pred HHHHhCCCCceEEEEe
Q 043826 78 TLATGAGFSGMSCERA 93 (104)
Q Consensus 78 ~ll~~aGf~~~~~~~~ 93 (104)
.|+.++|++......+
T Consensus 201 ~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 201 RWLLGANLKIIDRKGL 216 (243)
T ss_pred HhcccCCceEEeecce
Confidence 9999999998876654
No 72
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.029 Score=38.90 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=32.5
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE-Eeee
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIV-VELM 40 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i-~d~~ 40 (104)
+.++.+.|-+++.++|...|..++.+|.||-.+++ +|..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 45678889999999999999999999999976665 3433
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.86 E-value=0.026 Score=37.95 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 94 (104)
..+++++.+.|+|||++++.- . ....+++.++++++||+.+++....
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~~--------~----------------------~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLEI--------G----------------------YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred HHHHHHHHHhcccCCEEEEEE--------C----------------------ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 478999999999999987621 0 0124578899999999988877653
No 74
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.63 E-value=0.032 Score=37.53 Aligned_cols=60 Identities=17% Similarity=0.335 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeCCCe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGNL 97 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~ 97 (104)
...|+++.+.|+|||.|.|.|-.. + +. +.+++.+.++.-||+..........+
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~S----------R----f~-------------~~~~F~~~~~~~GF~~~~~d~~n~~F 190 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKS----------R----FE-------------NVKQFIKALKKLGFKLKSKDESNKHF 190 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGG----------G-----S--------------HHHHHHHHHCTTEEEEEEE--STTE
T ss_pred HHHHHHHHheeccCcEEEEEEecc----------c----Cc-------------CHHHHHHHHHHCCCeEEecccCCCeE
Confidence 578999999999999999999421 1 11 35678888999999999866666788
Q ss_pred EEEEEEC
Q 043826 98 WVMEFYK 104 (104)
Q Consensus 98 ~vie~~~ 104 (104)
.+++.+|
T Consensus 191 ~~f~F~K 197 (219)
T PF05148_consen 191 VLFEFKK 197 (219)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888765
No 75
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.57 E-value=0.1 Score=35.19 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=54.5
Q ss_pred EEeccccccCChHH-HHHHHHHHHhhCCCCCE-----EEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHH
Q 043826 3 NCTLTILHDWNDEH-CLKLLKNCYKSIPEDGK-----VIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEF 76 (104)
Q Consensus 3 y~~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~-----l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~ 76 (104)
-.++-||-..|++. .-++|+++++-|+|+|. |+|+ .|.. . ..|++.-+.+.|
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV---lP~~-----------------C--v~NSRy~~~~~l 165 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV---LPLP-----------------C--VTNSRYMTEERL 165 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE---eCch-----------------H--hhcccccCHHHH
Confidence 45677888899775 78999999999999998 5554 1211 1 137888899999
Q ss_pred HHHHHhCCCCceEEEEeC
Q 043826 77 MTLATGAGFSGMSCERAI 94 (104)
Q Consensus 77 ~~ll~~aGf~~~~~~~~~ 94 (104)
.++++.-||..++.....
T Consensus 166 ~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 166 REIMESLGFTRVKYKKSK 183 (219)
T ss_pred HHHHHhCCcEEEEEEecC
Confidence 999999999999876553
No 76
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=95.57 E-value=0.018 Score=39.95 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=54.4
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCc-----eecCHHHHHH
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDG-----KERTRHEFMT 78 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g-----~~rt~~e~~~ 78 (104)
+.+-|+||..|. +.+++.+.+.|+|||+++|....-.-. ..+. ...++-..+...+.| +.-+++|..+
T Consensus 163 vcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~l---S~~~--~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~ 235 (282)
T KOG1270|consen 163 VCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTIL---SFAG--TIFLAEIVLRIVPKGTHTWEKFINPEELTS 235 (282)
T ss_pred eeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHH---Hhhc--cccHHHHHHHhcCCCCcCHHHcCCHHHHHH
Confidence 456688999776 899999999999999999987532211 0000 112222222212233 4568899999
Q ss_pred HHHhCCCCceEEEE
Q 043826 79 LATGAGFSGMSCER 92 (104)
Q Consensus 79 ll~~aGf~~~~~~~ 92 (104)
+++.+|++...+..
T Consensus 236 ~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 236 ILNANGAQVNDVVG 249 (282)
T ss_pred HHHhcCcchhhhhc
Confidence 99999998877654
No 77
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.26 E-value=0.089 Score=34.33 Aligned_cols=26 Identities=12% Similarity=-0.070 Sum_probs=22.4
Q ss_pred ceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 68 GKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
.+..+.+++.++++++||++++....
T Consensus 143 ~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 143 IHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred cccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 45679999999999999999887665
No 78
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.18 E-value=0.052 Score=35.93 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=44.1
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~ 86 (104)
.|+|..+.+...++++++.++++|||.+++...+..++ .|. ... ....+..+|+.+.+ +|++
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d--~p~------~~~--------~~f~~~~~EL~~~y--~dW~ 163 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD--YPC------PSP--------FPFLLKPGELREYY--ADWE 163 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS--S--------SS----------S--B-TTHHHHHT--TTSE
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC--CCC------CCC--------CCcccCHHHHHHHh--CCCe
Confidence 58899999999999999999999999988866553221 110 011 11124567899999 6888
Q ss_pred ceEEE
Q 043826 87 GMSCE 91 (104)
Q Consensus 87 ~~~~~ 91 (104)
+++..
T Consensus 164 il~y~ 168 (192)
T PF03848_consen 164 ILKYN 168 (192)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87653
No 79
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.03 E-value=0.049 Score=36.64 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=44.9
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG 84 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG 84 (104)
+..|+-.+.+...+-.+++.+.|+|||+++++-...+... .+|+ +. -+.+|+++++. .+
T Consensus 123 r~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP-------f~------------v~~~ev~~l~~-~~ 182 (218)
T PF05724_consen 123 RTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP-------FS------------VTEEEVRELFG-PG 182 (218)
T ss_dssp CSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------------HHHHHHHHT-TT
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC-------CC------------CCHHHHHHHhc-CC
Confidence 3478888999999999999999999999544443333221 1222 21 25789999998 88
Q ss_pred CCceEEEE
Q 043826 85 FSGMSCER 92 (104)
Q Consensus 85 f~~~~~~~ 92 (104)
|++.....
T Consensus 183 f~i~~l~~ 190 (218)
T PF05724_consen 183 FEIEELEE 190 (218)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEec
Confidence 88776654
No 80
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.94 E-value=0.15 Score=35.73 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=48.3
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT 81 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~ 81 (104)
+|+++-+--|| ...++++++.|+|||.+.|.|.-. ++.| ...+..-+.
T Consensus 233 V~CLSLMgtn~-----~df~kEa~RiLk~gG~l~IAEv~S-------------Rf~d--------------v~~f~r~l~ 280 (325)
T KOG3045|consen 233 VFCLSLMGTNL-----ADFIKEANRILKPGGLLYIAEVKS-------------RFSD--------------VKGFVRALT 280 (325)
T ss_pred EeeHhhhcccH-----HHHHHHHHHHhccCceEEEEehhh-------------hccc--------------HHHHHHHHH
Confidence 45555555555 568999999999999999998421 1122 223666777
Q ss_pred hCCCCceEEEEeCCCeEEEEEEC
Q 043826 82 GAGFSGMSCERAIGNLWVMEFYK 104 (104)
Q Consensus 82 ~aGf~~~~~~~~~~~~~vie~~~ 104 (104)
.-||......-....+.++|+.|
T Consensus 281 ~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 281 KLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred HcCCeeeehhhhcceEEEEEEec
Confidence 78888877665556777777654
No 81
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.90 E-value=0.047 Score=37.70 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=50.3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826 1 CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA 80 (104)
Q Consensus 1 ~~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll 80 (104)
|+=+-+||==+|.|+-..++++++++-|.|||.|++ | |.... . +.+..... .-....+.--...++.+..|+
T Consensus 172 cLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-E---PQpWk-s-Y~kaar~~--e~~~~ny~~i~lkp~~f~~~l 243 (288)
T KOG2899|consen 172 CLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-E---PQPWK-S-YKKAARRS--EKLAANYFKIFLKPEDFEDWL 243 (288)
T ss_pred EEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-c---CCchH-H-HHHHHHHH--HHhhcCccceecCHHHHHhhh
Confidence 344567777799999999999999999999999854 3 22211 1 11111111 111112234456788999999
Q ss_pred HhC--CCCce
Q 043826 81 TGA--GFSGM 88 (104)
Q Consensus 81 ~~a--Gf~~~ 88 (104)
.++ ||+-+
T Consensus 244 ~q~~vgle~~ 253 (288)
T KOG2899|consen 244 NQIVVGLESV 253 (288)
T ss_pred hhhhhheeee
Confidence 988 55543
No 82
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.88 E-value=0.056 Score=37.59 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=33.6
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
-+.+|||=.++.+.-.+++++.+++|+|||.|++-..
T Consensus 206 IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 206 IFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 4678999999999999999999999999999988765
No 83
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.77 E-value=0.16 Score=32.86 Aligned_cols=47 Identities=13% Similarity=0.331 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
...+++++++.|+|||++++..... -+.+++.++++++||+.+++..
T Consensus 110 ~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 110 LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCCCCcceEEE
Confidence 3568899999999999997744211 0235677888999998776544
No 84
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.64 E-value=0.0043 Score=37.46 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=40.7
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCEEEEEee-ecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh--
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL-MLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG-- 82 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~-~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~-- 82 (104)
+||==+|.|+-...+++++++.|+|||.+++ |+ -...-... .+......-+ . ..-...++++..+|.+
T Consensus 12 kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~---~~~~~~~~~n----~-~~i~lrP~~F~~~L~~~e 82 (110)
T PF06859_consen 12 KWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKA---KRLSEEIREN----Y-KSIKLRPDQFEDYLLEPE 82 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTT---TTS-HHHHHH----H-HH----GGGHHHHHTSTT
T ss_pred EEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHH---hhhhHHHHhH----H-hceEEChHHHHHHHHhcc
Confidence 3444478899999999999999999999854 42 11000000 0000011111 1 2222345578898887
Q ss_pred CCCCceEEEEe
Q 043826 83 AGFSGMSCERA 93 (104)
Q Consensus 83 aGf~~~~~~~~ 93 (104)
.||+..+....
T Consensus 83 vGF~~~e~~~~ 93 (110)
T PF06859_consen 83 VGFSSVEELGV 93 (110)
T ss_dssp T---EEEEE--
T ss_pred cceEEEEEccc
Confidence 59998876554
No 85
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=94.24 E-value=0.049 Score=31.43 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhCCCCCEE
Q 043826 15 EHCLKLLKNCYKSIPEDGKV 34 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l 34 (104)
++...+|+++++.|+|||++
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 44579999999999999986
No 86
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.18 E-value=0.38 Score=32.79 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe-CC
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA-IG 95 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~ 95 (104)
-.++++++.+.|+|||++++ +. . . ...+++.+++.+.||+.+++..- .+
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~-e~----g------------~-------------~~~~~~~~~l~~~gf~~v~~~~d~~~ 266 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLL-EI----G------------Y-------------DQGEAVRALLAAAGFADVETRKDLAG 266 (275)
T ss_pred HHHHHHHHHHhcccCCEEEE-EE----C------------c-------------hHHHHHHHHHHhCCCceeEEecCCCC
Confidence 46789999999999999987 21 0 0 11346888999999997776543 34
Q ss_pred CeEEEEEE
Q 043826 96 NLWVMEFY 103 (104)
Q Consensus 96 ~~~vie~~ 103 (104)
.-.++-++
T Consensus 267 ~~r~~~~~ 274 (275)
T PRK09328 267 RDRVVLGR 274 (275)
T ss_pred CceEEEEE
Confidence 44444443
No 87
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.13 E-value=0.082 Score=31.33 Aligned_cols=27 Identities=7% Similarity=0.277 Sum_probs=21.4
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~ 37 (104)
+.+.....++++++++.|+|||++++.
T Consensus 95 ~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 95 GGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 334445579999999999999998764
No 88
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.07 E-value=0.045 Score=37.81 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEE
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
++=...++|+.+.|+|||.|++....-. . .+.- ....+ ..-.-+++.+++-++++||.+.+...
T Consensus 176 ~~y~~al~ni~~lLkpGG~Lil~~~l~~-t----~Y~v--G~~~F-------~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 176 DEYRRALRNISSLLKPGGHLILAGVLGS-T----YYMV--GGHKF-------PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEESS--S----EEEE--TTEEE-------E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEcCc-e----eEEE--CCEec-------ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 4568899999999999999999886432 2 0100 00001 11224788999999999999988775
No 89
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=93.73 E-value=0.22 Score=33.84 Aligned_cols=37 Identities=3% Similarity=0.001 Sum_probs=32.4
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
+.+++.++++...+..+++.+.|+|||+++++-.-.+
T Consensus 131 ra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 131 RGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred ehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 4678899999999999999999999999998876443
No 90
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.55 E-value=0.25 Score=27.39 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=24.9
Q ss_pred eccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826 5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~ 37 (104)
....+|.+ ++....+++++.+.|+|||.+++.
T Consensus 72 ~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred Eccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 34455554 456799999999999999999875
No 91
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.50 E-value=0.57 Score=32.34 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=52.2
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCc-ccchhh--h--hhhhhhhcCCCceecCHHHH
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSI-ESKSNF--H--FDVLMMIQRPDGKERTRHEF 76 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~-~~~~~~--~--~~l~m~~~~~~g~~rt~~e~ 76 (104)
+++.--++..++.++..++|+.+.+...||+.+ +.|.+.+-...... ..+... . .+...+. .+ .+.++.
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~ 234 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRL-AFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLV---FG--IDRADV 234 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEE-EEEeccccchhHHHHHHHHHHHhhhcccccccc---cC--CChhhH
Confidence 456667889999999999999999988888877 46766542111100 000000 0 1111110 12 367899
Q ss_pred HHHHHhCCCCceEE
Q 043826 77 MTLATGAGFSGMSC 90 (104)
Q Consensus 77 ~~ll~~aGf~~~~~ 90 (104)
.+||++.||+....
T Consensus 235 ~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 235 AEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHCCCeeecC
Confidence 99999999998764
No 92
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=93.34 E-value=0.28 Score=32.57 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=31.1
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 043826 4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPE 43 (104)
Q Consensus 4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~ 43 (104)
+...+||++++++..++++++++.+ ++.++|.|...+.
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 4677899999888899999999986 6788888876543
No 93
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=0.1 Score=33.79 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=28.2
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~ 37 (104)
.+|+-|+.-++-...++.|++-|+|||.|-|.
T Consensus 54 eHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 54 EHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 46777888888999999999999999999775
No 94
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=92.19 E-value=0.44 Score=31.72 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.1
Q ss_pred HHHHHHHHhhCCCCCEEEEEeee
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
..+|+.+++.|+|||.+++..+.
T Consensus 145 ~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 145 ELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHHHHcCCCCEEEEEEec
Confidence 57999999999999999997643
No 95
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=91.79 E-value=0.31 Score=35.57 Aligned_cols=30 Identities=13% Similarity=0.376 Sum_probs=25.5
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
.|.++++.+.++++.+++.|+|||+++++-
T Consensus 311 ~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 311 QHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 344667778999999999999999999884
No 96
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=91.65 E-value=0.19 Score=32.94 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.5
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d 38 (104)
..+++++++.|+|||.+++.-
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 479999999999999997754
No 97
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=90.71 E-value=0.28 Score=31.93 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d 38 (104)
..+++.+++.|+|||++++.+
T Consensus 122 ~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred HHHHHHHHHhcCCCCEEEEEc
Confidence 457888899999999998763
No 98
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.60 E-value=1.4 Score=31.15 Aligned_cols=87 Identities=11% Similarity=-0.060 Sum_probs=52.5
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC---CcccchhhhhhhhhhhcCCCceecCHHHHHH
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNT---SIESKSNFHFDVLMMIQRPDGKERTRHEFMT 78 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~---~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ 78 (104)
+.+.-.++-.++.++..++|++|....+||++++..-...+..... ..........++...-.. -......|+..
T Consensus 173 ~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~~~e~~~ 250 (297)
T COG3315 173 LWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELV--YFGDDPAEIET 250 (297)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccce--eccCCHHHHHH
Confidence 4566678889999999999999999999998886654311111111 000000011111111000 11235789999
Q ss_pred HHHhCCCCceEE
Q 043826 79 LATGAGFSGMSC 90 (104)
Q Consensus 79 ll~~aGf~~~~~ 90 (104)
|+.+.||.....
T Consensus 251 ~l~~~g~~~~~~ 262 (297)
T COG3315 251 WLAERGWRSTLN 262 (297)
T ss_pred HHHhcCEEEEec
Confidence 999999988765
No 99
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=90.20 E-value=0.18 Score=36.10 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=25.3
Q ss_pred eccccccC--ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 5 TLTILHDW--NDEHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 5 ~~~vlH~~--~d~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
....||.- +.+.++.+|+++...|+|||.++..=
T Consensus 151 cQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 151 CQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp EES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 34456653 35568999999999999999987653
No 100
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=90.16 E-value=0.74 Score=28.32 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=27.2
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEeCC-CeEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERAIG-NLWV 99 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~v 99 (104)
.+.-+|.+++.+++++|||++.+.+.-+. .+++
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 46678999999999999999999887753 4544
No 101
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.08 E-value=0.66 Score=33.89 Aligned_cols=41 Identities=7% Similarity=-0.008 Sum_probs=33.4
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
.|+++.+.--+++++..++++.+.++++||||++.--...+
T Consensus 298 ~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 298 RFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred EEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 36777777555677799999999999999999988876554
No 102
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=89.43 E-value=0.37 Score=31.76 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d 38 (104)
...+|+++++.|+|||.+++..
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEc
Confidence 4689999999999999998864
No 103
>PRK14967 putative methyltransferase; Provisional
Probab=89.03 E-value=3.6 Score=27.39 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeee
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
...+++++.+.|+|||+++++..-
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEec
Confidence 456889999999999999987543
No 104
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=87.77 E-value=1.4 Score=31.60 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=25.3
Q ss_pred ccccC---ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 8 ILHDW---NDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 8 vlH~~---~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
-+|+. +.+...++++++.+.|+|||+++|+-.
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 45653 345578999999999999999988654
No 105
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=87.66 E-value=0.59 Score=32.92 Aligned_cols=35 Identities=11% Similarity=0.311 Sum_probs=29.2
Q ss_pred eccccccCChHH-HHHHHHHHHhhCCCCCEEEEEee
Q 043826 5 TLTILHDWNDEH-CLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 5 ~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
-..++|+|+... ..++++++.+.++|||..+|.=.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 356899999665 78999999999999999777643
No 106
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=87.65 E-value=0.84 Score=29.54 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
..++|+++++.|+|||++++.
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEE
Confidence 368999999999999999885
No 107
>PRK07402 precorrin-6B methylase; Provisional
Probab=86.46 E-value=0.93 Score=29.53 Aligned_cols=24 Identities=8% Similarity=0.315 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
....+++++.+.|+|||++++...
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEee
Confidence 357899999999999999988864
No 108
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=86.33 E-value=6.1 Score=27.64 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
..+-|..|+..|+|||.-+=+-++.=... +.. .....+-+-|.+|+.++++..||++++...
T Consensus 181 i~~Yi~tI~~lLkpgG~WIN~GPLlyh~~------------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 181 IIEYIETIEHLLKPGGYWINFGPLLYHFE------------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHHHHHhccCCEEEecCCccccCC------------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 67889999999999995544443321111 000 000124567899999999999999987655
No 109
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=86.14 E-value=1 Score=29.44 Aligned_cols=23 Identities=13% Similarity=0.502 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEE
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIV 36 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i 36 (104)
.++...+++.+.+.|+|||++++
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 121 SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred cccHHHHHHHHHHHcCCCcEEEE
Confidence 34567899999999999999975
No 110
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.87 E-value=0.88 Score=33.34 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=32.1
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
+|++--.||+=+.-.....+++..+.+.|||.++|+|.-.|
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 45555566776666666799999999999999999997554
No 111
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=85.80 E-value=1.1 Score=32.49 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=23.8
Q ss_pred ecccccc-CC-hHHHHHHHHHHHhhCCCCCEEE
Q 043826 5 TLTILHD-WN-DEHCLKLLKNCYKSIPEDGKVI 35 (104)
Q Consensus 5 ~~~vlH~-~~-d~~~~~iL~~~~~aL~pgg~l~ 35 (104)
.+.++|. |. .++++.+|+|+.+.|+|||.++
T Consensus 202 cQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 202 CQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred eeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 3455664 33 4569999999999999999875
No 112
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=85.25 E-value=1.2 Score=29.19 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d 38 (104)
...+++.+++.|+|||++++.+
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEe
Confidence 4679999999999999999885
No 113
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=84.54 E-value=1.5 Score=31.18 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVELMLPEV 44 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~ 44 (104)
+-...|+.+.+.|+|||+++|+-+-.-++
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 46788999999999999999998865444
No 114
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=84.52 E-value=1.8 Score=30.81 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVELMLPEV 44 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~ 44 (104)
+..+.|..+.+.|+||||++|+-+-.-++
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 46789999999999999999998865444
No 115
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=84.24 E-value=1.1 Score=30.60 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=52.5
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhh-----hhhhhhhhc-CCCceecCHHHHHHHH
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNF-----HFDVLMMIQ-RPDGKERTRHEFMTLA 80 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~-----~~~l~m~~~-~~~g~~rt~~e~~~ll 80 (104)
.+||=.+|. .++|.+....|.|||.|.+.= |++.+.+....... .+.-.+-.. ...+..-+.+.|-++|
T Consensus 100 AvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 100 AVLQWLPDH--PELLPRLVSQLAPGGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhcccc--HHHHHHHHHhhCCCceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 377777777 799999999999999997753 44433321100000 111111100 0123345789999999
Q ss_pred HhCCCCceEEEEe------CCCeEEEEEE
Q 043826 81 TGAGFSGMSCERA------IGNLWVMEFY 103 (104)
Q Consensus 81 ~~aGf~~~~~~~~------~~~~~vie~~ 103 (104)
...+ ..+.+++. .+..+|+|=+
T Consensus 175 a~~~-~rvDiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 175 APLA-CRVDIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred Cccc-ceeeeeeeeccccCCCccchhhhe
Confidence 8777 55566553 3455666543
No 116
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=82.72 E-value=13 Score=25.74 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC--
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI-- 94 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-- 94 (104)
-.++++.+...|+|||++.++-. .+ ...|+..++.+.+|...++..+.
T Consensus 149 le~~i~~a~~~lk~~G~l~~V~r---~e---------------------------rl~ei~~~l~~~~~~~k~i~~V~p~ 198 (248)
T COG4123 149 LEDLIRAAAKLLKPGGRLAFVHR---PE---------------------------RLAEIIELLKSYNLEPKRIQFVYPK 198 (248)
T ss_pred HHHHHHHHHHHccCCCEEEEEec---HH---------------------------HHHHHHHHHHhcCCCceEEEEecCC
Confidence 46889999999999999977652 11 13377778888888888777763
Q ss_pred ----CCeEEEEEEC
Q 043826 95 ----GNLWVMEFYK 104 (104)
Q Consensus 95 ----~~~~vie~~~ 104 (104)
...-++|++|
T Consensus 199 ~~k~A~~vLv~~~k 212 (248)
T COG4123 199 IGKAANRVLVEAIK 212 (248)
T ss_pred CCCcceEEEEEEec
Confidence 3566777765
No 117
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=82.61 E-value=9.4 Score=26.61 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=41.0
Q ss_pred cccccCChH------HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826 7 TILHDWNDE------HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA 80 (104)
Q Consensus 7 ~vlH~~~d~------~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll 80 (104)
.++||=|.= -+.++-++.++.|+|||+++ ..+..+. .. ..-.|+ +....+.|
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF--HYvG~Pg--~r-----yrG~d~-------------~~gVa~RL 265 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF--HYVGNPG--KR-----YRGLDL-------------PKGVAERL 265 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE--EEeCCCC--cc-----cccCCh-------------hHHHHHHH
Confidence 356665531 25678889999999999985 2232221 10 112332 34778889
Q ss_pred HhCCCCceEEEEe
Q 043826 81 TGAGFSGMSCERA 93 (104)
Q Consensus 81 ~~aGf~~~~~~~~ 93 (104)
+++||..++....
T Consensus 266 r~vGF~~v~~~~~ 278 (287)
T COG2521 266 RRVGFEVVKKVRE 278 (287)
T ss_pred HhcCceeeeeehh
Confidence 9999998876654
No 118
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=82.32 E-value=2.1 Score=30.29 Aligned_cols=29 Identities=14% Similarity=0.199 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVELMLPEV 44 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~ 44 (104)
+-...|..+.+.|+|||+++|+-+-.-++
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 46789999999999999999998865444
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=82.18 E-value=2.6 Score=29.38 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
....+++++.+.|+|||++++...
T Consensus 237 ~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 237 VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 346899999999999999988764
No 120
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=82.13 E-value=2.1 Score=29.68 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.6
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
++=|.+|+ -..|.++.++|+|||.+++.-+..+
T Consensus 167 v~LDmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 167 VFLDLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred EEEcCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 44477776 7899999999999999988765543
No 121
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=81.47 E-value=8.8 Score=22.71 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=47.4
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCc------eecCHHHHHHHHH
Q 043826 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDG------KERTRHEFMTLAT 81 (104)
Q Consensus 8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g------~~rt~~e~~~ll~ 81 (104)
+|=|++.++..++|++... +. .+++++. +.|.++ .. ..+.-+ .-.++++ ...+++++.+.++
T Consensus 4 vLIHYp~~d~~~~l~~La~-~t-~~~~ifT--fAP~T~---~L---~~m~~i--G~lFP~~dRsp~i~~~~e~~l~~~l~ 71 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLAS-RT-RGSLIFT--FAPRTP---LL---ALMHAI--GKLFPRPDRSPRIYPHREEDLRRALA 71 (97)
T ss_pred eEeccCHHHHHHHHHHHHH-hc-cCcEEEE--ECCCCH---HH---HHHHHH--hccCCCCCCCCcEEEeCHHHHHHHHH
Confidence 5668899999999999886 33 4455443 334432 10 011111 1123222 2245789999999
Q ss_pred hCCCCceEEEEeCCC
Q 043826 82 GAGFSGMSCERAIGN 96 (104)
Q Consensus 82 ~aGf~~~~~~~~~~~ 96 (104)
++||++.+...+.++
T Consensus 72 ~~g~~~~r~~ris~g 86 (97)
T PF07109_consen 72 AAGWRIGRTERISSG 86 (97)
T ss_pred hCCCeeeecccccCc
Confidence 999999998888654
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=81.13 E-value=2 Score=31.59 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
.++|+++++.|+|||+++....-..
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 6899999999999999999887553
No 123
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=81.01 E-value=2 Score=28.42 Aligned_cols=22 Identities=9% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d 38 (104)
...+|+.+.+.|+|||++++-=
T Consensus 114 i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEe
Confidence 4789999999999999996643
No 124
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=80.04 E-value=1.4 Score=28.09 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
-..++++.+.+.|+|||+++++-.
T Consensus 118 ~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 118 LLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHhccCCCEEEEEee
Confidence 468999999999999999976543
No 125
>PRK04457 spermidine synthase; Provisional
Probab=79.01 E-value=2.4 Score=29.22 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=18.5
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 043826 18 LKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~ 37 (104)
.++++++++.|+|||.+++.
T Consensus 157 ~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 79999999999999999884
No 126
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=78.74 E-value=4.1 Score=29.14 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=27.3
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEeCC-CeEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERAIG-NLWV 99 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~v 99 (104)
++.-||.+++++++++|||++.+.+.-+. .+++
T Consensus 284 ~S~Kyt~~~~~~l~~~aG~~~~~~W~d~~~~f~~ 317 (319)
T TIGR03439 284 CSGKYDKDEREKLCQSAGLKVVDVWTNEDGDYGI 317 (319)
T ss_pred eeeCCCHHHHHHHHHHCCCeeeEEEECCCCceee
Confidence 56779999999999999999999987753 4444
No 127
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=78.69 E-value=1.8 Score=23.00 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=11.6
Q ss_pred HHHHhCCCCceEEEEe
Q 043826 78 TLATGAGFSGMSCERA 93 (104)
Q Consensus 78 ~ll~~aGf~~~~~~~~ 93 (104)
+||++|||..-+-..+
T Consensus 31 ~WL~~aGF~~G~~v~V 46 (57)
T PF08845_consen 31 KWLEEAGFTIGDPVKV 46 (57)
T ss_pred hhhHHhCCCCCCEEEE
Confidence 6899999986544443
No 128
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=78.34 E-value=2.7 Score=31.04 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.++|+++.+.|+|||+++.....+
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCC
Confidence 689999999999999998887654
No 129
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=78.17 E-value=5.8 Score=27.16 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhCCC-CCEEEEEeeecC------CCCCCCcccchhhhhhhhhhhcCCCceecCH--HHHHHHHHhCCCCc
Q 043826 17 CLKLLKNCYKSIPE-DGKVIVVELMLP------EVPNTSIESKSNFHFDVLMMIQRPDGKERTR--HEFMTLATGAGFSG 87 (104)
Q Consensus 17 ~~~iL~~~~~aL~p-gg~l~i~d~~~~------~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~--~e~~~ll~~aGf~~ 87 (104)
.-++|+-+..+|+| +|++++.= +.| .++.+.+ ...| +.+ . -+|+.+.+ +.+-++++.+||.+
T Consensus 185 p~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~~-----~rPd-n~L-e-~~Gr~~ee~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 185 PFKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGLP-----LRPD-NLL-E-NNGRSFEEEVARFMELLRNCGYRV 255 (288)
T ss_pred hHHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCCc-----CCch-HHH-H-hcCccHHHHHHHHHHHHHhcCchh
Confidence 47899999999999 78876643 322 1222110 0111 111 1 15654433 33678899999998
Q ss_pred eEEEEeC
Q 043826 88 MSCERAI 94 (104)
Q Consensus 88 ~~~~~~~ 94 (104)
....+++
T Consensus 256 eawTrlP 262 (288)
T KOG3987|consen 256 EAWTRLP 262 (288)
T ss_pred hhhhcCC
Confidence 8776653
No 130
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=77.61 E-value=3.5 Score=30.38 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d 38 (104)
..+|+.+++.|+|||.+.+.-
T Consensus 215 ~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 215 EDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred HHHHHHHHHHcCCCcEEEEEE
Confidence 589999999999999997754
No 131
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=77.22 E-value=3.7 Score=29.16 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
++-+.+|++.+++.|++||.|.|+=.
T Consensus 242 ~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 242 HSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 34467999999999999999988775
No 132
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=76.83 E-value=2.7 Score=28.91 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHHHHhhCCCCCEEEEEe
Q 043826 20 LLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 20 iL~~~~~aL~pgg~l~i~d 38 (104)
.++++++.|+|||++++..
T Consensus 163 ~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 163 KAEELARVVKPGGIVITVT 181 (272)
T ss_pred CHHHHHhhccCCCEEEEEe
Confidence 4688999999999999875
No 133
>PRK01581 speE spermidine synthase; Validated
Probab=76.74 E-value=2.8 Score=30.65 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
..+.++.|++.|+|||.+++.
T Consensus 247 T~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 247 TSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHHHhcCCCcEEEEe
Confidence 367899999999999998776
No 134
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=76.61 E-value=1.6 Score=31.09 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVELMLPEV 44 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~ 44 (104)
+-...|.++.+.|+|||+++|+-+-.-++
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHSLED 247 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHSLED 247 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecchhh
Confidence 46789999999999999999998754333
No 135
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=75.90 E-value=8.5 Score=22.17 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCC
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPE 43 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~ 43 (104)
....++++.+.++|+|.+++.+.....
T Consensus 134 ~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 134 PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 588999999999999999988876443
No 136
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=75.89 E-value=1.5 Score=25.71 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhCCCCCEEEEE
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~ 37 (104)
....+++++.+.|+|||.++++
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEE
Confidence 3478999999999999999876
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=75.89 E-value=3.7 Score=28.23 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.++|+++.+.|+|||+++..-.-.
T Consensus 179 ~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 179 KELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCC
Confidence 569999999999999997665543
No 138
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=74.97 E-value=4 Score=30.10 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.++|+++.+.|+|||+++......
T Consensus 352 ~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 352 SEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCC
Confidence 589999999999999999888643
No 139
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=74.66 E-value=5 Score=28.45 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d 38 (104)
-.++|+++++.|+|||++++.-
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEE
Confidence 5789999999999999998764
No 140
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=74.06 E-value=4.1 Score=30.22 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.++|+++.+.|+|||+++......
T Consensus 357 ~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 357 AELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCC
Confidence 469999999999999999988654
No 141
>PLN02366 spermidine synthase
Probab=73.93 E-value=3.8 Score=29.07 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
..+.++.++++|+|||.+++.
T Consensus 185 t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 185 EKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHHHHHHhcCCCcEEEEC
Confidence 467899999999999998653
No 142
>PRK03612 spermidine synthase; Provisional
Probab=73.40 E-value=3.3 Score=31.43 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 043826 18 LKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~ 37 (104)
.+.++++++.|+|||.+++.
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEe
Confidence 46889999999999998765
No 143
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=72.78 E-value=3.8 Score=30.87 Aligned_cols=21 Identities=10% Similarity=0.420 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d 38 (104)
.+||.++.+.|+|||+|+=.-
T Consensus 222 ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYST 242 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEEC
Confidence 789999999999999985443
No 144
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=72.12 E-value=14 Score=24.04 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 24 CYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 24 ~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
..+++++|-+++|+|-++.. +| |.....++++++|++++-+..+
T Consensus 109 ~~~~l~~G~rVlIVDDllaT-----------------------Gg---T~~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 109 HKDALKPGDRVLIVDDLLAT-----------------------GG---TALALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred EhhhCCCCCEEEEEecchhc-----------------------Ch---HHHHHHHHHHHCCCEEEEEEEE
Confidence 34567788888888866532 22 4566778888888887765543
No 145
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=71.73 E-value=34 Score=24.43 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeCCC
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGN 96 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 96 (104)
-.++...+.+.++|||++++.-.+.+ ..+.+.+-++++||+++++......
T Consensus 242 l~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~~~~~~~eW 292 (300)
T COG2264 242 LVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVVEVLEREEW 292 (300)
T ss_pred HHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEeEEEecCCE
Confidence 46788888899999999987763321 1335566677789998887766444
Q ss_pred eE
Q 043826 97 LW 98 (104)
Q Consensus 97 ~~ 98 (104)
.+
T Consensus 293 ~~ 294 (300)
T COG2264 293 VA 294 (300)
T ss_pred EE
Confidence 33
No 146
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=71.50 E-value=14 Score=26.12 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
.+.-..+...+.+.|+|||.+++.-.+..+ ..++.+.+++ ||+..+....
T Consensus 235 ~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~-----------------------------~~~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 235 ADVLLELAPDIASLLKPGGYLILSGILEEQ-----------------------------EDEVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------------HHHHHHHHHT-TEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------------HHHHHHHHHC-CCEEEEEEEE
Confidence 344566777788888889888876654421 2355566665 9998887776
Q ss_pred CCCeEEE
Q 043826 94 IGNLWVM 100 (104)
Q Consensus 94 ~~~~~vi 100 (104)
+.-.+++
T Consensus 285 ~~W~~l~ 291 (295)
T PF06325_consen 285 GEWVALV 291 (295)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 5544443
No 147
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=70.93 E-value=6.3 Score=27.86 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIV 36 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i 36 (104)
...+++++.+.|+|||++++
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 47899999999999999875
No 148
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=70.85 E-value=5.5 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.++|.++++.|+|||+++..-.-.
T Consensus 346 ~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 346 LRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCC
Confidence 678999999999999987766544
No 149
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=70.46 E-value=6.6 Score=27.37 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIV 36 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i 36 (104)
...+++++.+.|+|||++++
T Consensus 230 ~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVV 249 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 47889999999999998863
No 150
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=69.97 E-value=7.1 Score=28.92 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEee
Q 043826 18 LKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
.++|+++.+.|+|||+++..-.
T Consensus 359 ~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 359 LEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred HHHHHHHHHHcCCCCEEEEEcC
Confidence 5789999999999999986554
No 151
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=69.59 E-value=45 Score=25.01 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC-C
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI-G 95 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~ 95 (104)
-+++++.+.+.|+|||.++ +|.-. ...+++.+++++.||+.+++..-. +
T Consensus 360 yr~Ii~~a~~~LkpgG~li-lEiG~-----------------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLL-LEHGF-----------------------------DQGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred HHHHHHHHHHhcCCCcEEE-EEECc-----------------------------cHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 3577777778888888864 33211 013467788888999887776643 4
Q ss_pred CeEEEEEE
Q 043826 96 NLWVMEFY 103 (104)
Q Consensus 96 ~~~vie~~ 103 (104)
...++.++
T Consensus 410 ~dR~v~~~ 417 (423)
T PRK14966 410 LDRVTLGK 417 (423)
T ss_pred CcEEEEEE
Confidence 44444443
No 152
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.54 E-value=13 Score=24.61 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=26.3
Q ss_pred EEEeccccccCCh----------HHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 2 INCTLTILHDWND----------EHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 2 ~y~~~~vlH~~~d----------~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
+-+|.++|||++. +.-.++.+++.+.|+|+..++-.-+
T Consensus 53 VIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt 100 (183)
T cd01842 53 LVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTA 100 (183)
T ss_pred EEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecC
Confidence 3468889999876 2356777788888888866544433
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=69.22 E-value=5.4 Score=27.49 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
..+.++++++.|+|||.+++.
T Consensus 165 ~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 165 TKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHHHhCCCcEEEEc
Confidence 468889999999999999876
No 154
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=68.89 E-value=6.2 Score=25.51 Aligned_cols=57 Identities=9% Similarity=0.218 Sum_probs=38.1
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceE
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMS 89 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 89 (104)
.||......++.+++.+.++||+.++++|. +.. + ... .....+...+++.||+.++
T Consensus 131 ~D~~~~~~~~i~~~~~~~~~~g~Iil~Hd~---~~~--~--------~t~-----------~~l~~~i~~l~~~Gy~~vt 186 (191)
T TIGR02764 131 RDWKNPGVESIVDRVVKNTKPGDIILLHAS---DSA--K--------QTV-----------KALPTIIKKLKEKGYEFVT 186 (191)
T ss_pred CccCCCCHHHHHHHHHhcCCCCCEEEEeCC---CCc--H--------hHH-----------HHHHHHHHHHHHCCCEEEE
Confidence 477766678899999999999988888862 111 0 000 0134677778888888776
Q ss_pred E
Q 043826 90 C 90 (104)
Q Consensus 90 ~ 90 (104)
+
T Consensus 187 l 187 (191)
T TIGR02764 187 I 187 (191)
T ss_pred H
Confidence 4
No 155
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=68.75 E-value=12 Score=23.18 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=19.9
Q ss_pred hhhhhhhhcCCCceecCHHHHHHHHHhCCC-----CceEEEEe
Q 043826 56 HFDVLMMIQRPDGKERTRHEFMTLATGAGF-----SGMSCERA 93 (104)
Q Consensus 56 ~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf-----~~~~~~~~ 93 (104)
+-|+.-.+.. +|+.++.++|..+|. ++| ...++.+.
T Consensus 47 l~dIs~qv~~-~G~k~~~e~WK~~~~-~~~~~~~~~~~~~~~g 87 (127)
T PF05772_consen 47 LGDISRQVEW-NGRKLDPEDWKELFT-AAFLIATGEEQRVVPG 87 (127)
T ss_dssp HHHHHHH--B-TTB---HHHHHHHHH-HHH-----S--EEEE-
T ss_pred HHHHHHHhHh-cCccCCHHHHHHHHH-HHHhhhccchhhhccC
Confidence 4455545554 899999999999998 566 45555553
No 156
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=68.26 E-value=5.4 Score=29.21 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
..||++..+.|++||+++-.-.-.
T Consensus 276 ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 276 LRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCC
Confidence 689999999999999997666544
No 157
>PRK00811 spermidine synthase; Provisional
Probab=67.94 E-value=6.3 Score=27.47 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
..+.++.+++.|+|||.+++.
T Consensus 170 t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 170 TKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred HHHHHHHHHHhcCCCcEEEEe
Confidence 367899999999999998763
No 158
>PRK11524 putative methyltransferase; Provisional
Probab=67.93 E-value=7 Score=27.17 Aligned_cols=20 Identities=10% Similarity=0.539 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 043826 18 LKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~ 37 (104)
...++.+++.|+|||.+++.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 57899999999999999875
No 159
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=67.85 E-value=4.5 Score=26.87 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHHHHHhhCCCCCEEEEEe
Q 043826 19 KLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d 38 (104)
.+.+.+.+.|+|||++++..
T Consensus 157 ~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 157 DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cchHHHHHhhCCCcEEEEEE
Confidence 34456778999999998853
No 160
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=66.86 E-value=13 Score=22.75 Aligned_cols=32 Identities=13% Similarity=-0.066 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826 73 RHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 104 (104)
...+++-|.++||++.+....++-...+.+.|
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred hHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 35689999999999998887776666665554
No 161
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=66.22 E-value=3.9 Score=26.55 Aligned_cols=21 Identities=24% Similarity=0.662 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
....++++++.|+|||.++|.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 678999999999999998775
No 162
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=65.76 E-value=4.3 Score=23.50 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
+....-++.+.+.|+|||.+++.|
T Consensus 82 ~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 82 EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 456778889999999999888776
No 163
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.53 E-value=27 Score=25.24 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=49.4
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhh---hcCCCc--eecCHHHHHHHHHh
Q 043826 8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMM---IQRPDG--KERTRHEFMTLATG 82 (104)
Q Consensus 8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~---~~~~~g--~~rt~~e~~~ll~~ 82 (104)
+|-..+.+++..+++-+.+..+ .+-+++.|++.+.++-+. .+--+.- ... .| ..-|.+..++=+.+
T Consensus 197 vLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~Fg~-------vM~~nlk~r~~~L-~gle~y~s~Esq~~Rf~~ 267 (335)
T KOG2918|consen 197 VLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRFGK-------VMLANLKRRGCPL-HGLETYNSIESQRSRFLK 267 (335)
T ss_pred hheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChHHH-------HHHHHHHhcCCCC-chhhhcccHHHHHHHHHh
Confidence 5667788889999999988665 667889999886554221 1100000 000 12 12367778888888
Q ss_pred CCCCceEEEEe
Q 043826 83 AGFSGMSCERA 93 (104)
Q Consensus 83 aGf~~~~~~~~ 93 (104)
+||+-+.+..+
T Consensus 268 ~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 268 AGWEYVIAVDM 278 (335)
T ss_pred cCCceeehhhH
Confidence 99998877654
No 164
>PRK13699 putative methylase; Provisional
Probab=65.18 E-value=9.2 Score=25.83 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIV 36 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i 36 (104)
....+++++++|+|||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 56889999999999998876
No 165
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=65.15 E-value=12 Score=24.44 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
.+-++++...|+|||.+++.=++-+
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeecCC
Confidence 5667889999999999998877664
No 166
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=64.73 E-value=6.7 Score=25.82 Aligned_cols=18 Identities=6% Similarity=0.311 Sum_probs=14.3
Q ss_pred HHHHHHhhCCCCCEEEEE
Q 043826 20 LLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 20 iL~~~~~aL~pgg~l~i~ 37 (104)
+.+++.+.|+|||++++.
T Consensus 155 ~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 155 IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred hhHHHHHhcCcCcEEEEE
Confidence 445678899999999774
No 167
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=64.44 E-value=9.7 Score=26.04 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
-..+++.+.+.|+|||++++.
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEE
Confidence 358888888999999998754
No 168
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=64.03 E-value=8.3 Score=26.35 Aligned_cols=58 Identities=7% Similarity=0.006 Sum_probs=34.6
Q ss_pred hhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCc--------eecCHHHHHHHHHhCCCCceEEEE
Q 043826 26 KSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDG--------KERTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 26 ~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g--------~~rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
+++++|.+++|+|-++....... ...++ +... ++ -.+....++++.++.|+....+..
T Consensus 171 ~~l~~G~rVLIVDDvi~TG~Tl~------~~~~l--l~~~-ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 171 SALKKGDRVLIVDDIIRSGETQR------ALLDL--ARQA-GADVVGVFFLIAVGEVGIDRAREETDAPVDALYT 236 (238)
T ss_pred HHcCCcCEEEEEecccccCHHHH------HHHHH--HHHc-CCEEEEEEEEEecCchHHHHHhHhcCCCEEEEEE
Confidence 46889999999999887653211 11111 1101 11 223444588888888987776654
No 169
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=63.99 E-value=12 Score=26.01 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=32.2
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
+.+.+++|-..++++..++++++.+.+.+ .|+|+|.-.+
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 45788999999998889999999887766 9999996554
No 170
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=63.45 E-value=5.6 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=16.2
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 043826 18 LKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~ 37 (104)
..+.+.+.+.|+|||++++.
T Consensus 157 ~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 157 PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ccccHHHHHhcCcCcEEEEE
Confidence 45667788899999998874
No 171
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=63.28 E-value=12 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
.+..++|.++-+.++||+.|+|+|.-
T Consensus 219 ~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 219 SKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 45789999999999999999999963
No 172
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=63.22 E-value=7.9 Score=27.99 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.+||..+.+.|+|||+|+-.-.-+
T Consensus 268 ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 268 KEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred HHHHHHHHHhcCCCCEEEEEccCC
Confidence 679999999999999997776543
No 173
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=63.15 E-value=8 Score=25.39 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d 38 (104)
..+.+.+.+.|+|||++++.-
T Consensus 155 ~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 155 PEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred hhhhHHHHHhcCCCcEEEEEE
Confidence 445677889999999998754
No 174
>PHA03411 putative methyltransferase; Provisional
Probab=62.65 E-value=19 Score=25.45 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCc
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSG 87 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 87 (104)
.+.++....-|+|+|.+.++ .... + .+. . .-+.+||+++++++||..
T Consensus 163 ~~~l~~v~~~L~p~G~~~~~---yss~---~-------~y~--------~--sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 163 GQKFADVGYFIVPTGSAGFA---YSGR---P-------YYD--------G--TMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred HHHHhhhHheecCCceEEEE---Eecc---c-------ccc--------c--cCCHHHHHHHHHhcCcEe
Confidence 35667777778888876666 1111 1 111 0 136889999999999974
No 175
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=61.59 E-value=6.9 Score=27.67 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=37.8
Q ss_pred CEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee---cCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHH
Q 043826 1 CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM---LPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFM 77 (104)
Q Consensus 1 ~~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~---~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~ 77 (104)
++|+-.+..|..+++ +.++++|+|.| |+|.. ++-.++. .. --.+...
T Consensus 225 ~ifvs~s~vh~L~p~--------l~~~~a~~A~L-vvEtaKfmvdLrKEq--------~~-------------~F~~kv~ 274 (289)
T PF14740_consen 225 LIFVSCSMVHFLKPE--------LFQALAPDAVL-VVETAKFMVDLRKEQ--------LQ-------------EFVKKVK 274 (289)
T ss_pred EEEEhhhhHhhcchH--------HHHHhCCCCEE-EEEcchhheeCCHHH--------HH-------------HHHHHHH
Confidence 368888888888876 55677889766 55642 2221110 01 0145789
Q ss_pred HHHHhCCCCceE
Q 043826 78 TLATGAGFSGMS 89 (104)
Q Consensus 78 ~ll~~aGf~~~~ 89 (104)
+|.++|||+...
T Consensus 275 eLA~~aG~~p~~ 286 (289)
T PF14740_consen 275 ELAKAAGFKPVT 286 (289)
T ss_pred HHHHHCCCcccc
Confidence 999999998764
No 176
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=61.54 E-value=11 Score=23.45 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=21.5
Q ss_pred Cc-eecCHHHHHHHHHhCCCCceEEEEeCCCeEEEE
Q 043826 67 DG-KERTRHEFMTLATGAGFSGMSCERAIGNLWVME 101 (104)
Q Consensus 67 ~g-~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie 101 (104)
+| +.-+-+|++++|+++||+.++.. +.++.-|++
T Consensus 14 GG~nki~MaeLr~~l~~~Gf~~V~Ty-i~SGNvvf~ 48 (137)
T PF08002_consen 14 GGKNKIKMAELREALEDLGFTNVRTY-IQSGNVVFE 48 (137)
T ss_dssp TTBS---HHHHHHHHHHCT-EEEEEE-TTTTEEEEE
T ss_pred CCCCcccHHHHHHHHHHcCCCCceEE-EeeCCEEEe
Confidence 44 34678999999999999998844 344444443
No 177
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=60.67 E-value=14 Score=25.70 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
....+++++.+.|+|||.++ +|.
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~-~e~ 244 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLV-CEI 244 (284)
T ss_pred HHHHHHHHHHHhccCCCEEE-EEE
Confidence 46789999999999999874 443
No 178
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=59.58 E-value=9.9 Score=26.41 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=23.8
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
.||......++.+++.+.++||+.++++|
T Consensus 210 ~Dw~~~~~~~i~~~v~~~~~~G~IILmHd 238 (268)
T TIGR02873 210 IDWKNPSPSVMVNRVLSKIHPGAMVLMHP 238 (268)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCcEEEEcC
Confidence 58876667789999998899998887776
No 179
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=58.87 E-value=9.3 Score=19.53 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=13.6
Q ss_pred HHHHHHHHhCCCCceEE
Q 043826 74 HEFMTLATGAGFSGMSC 90 (104)
Q Consensus 74 ~e~~~ll~~aGf~~~~~ 90 (104)
.|+.++|+.+||...+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 58899999999998854
No 180
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=58.61 E-value=17 Score=23.14 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=21.8
Q ss_pred cccCC--hHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 9 LHDWN--DEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 9 lH~~~--d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
+-.|| -+++.-+|..+...|++|+.|+|+-.
T Consensus 74 vly~PKaK~e~~~lL~~l~~~L~~g~~i~vVGE 106 (155)
T PF08468_consen 74 VLYWPKAKAEAQYLLANLLSHLPPGTEIFVVGE 106 (155)
T ss_dssp EEE--SSHHHHHHHHHHHHTTS-TT-EEEEEEE
T ss_pred EEEccCcHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 33566 44688999999999999999988864
No 181
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=57.48 E-value=21 Score=19.07 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=6.8
Q ss_pred CCCEEEEEeee
Q 043826 30 EDGKVIVVELM 40 (104)
Q Consensus 30 pgg~l~i~d~~ 40 (104)
+++.+++++.-
T Consensus 34 ~~~tll~i~~~ 44 (70)
T PF14258_consen 34 DDGTLLVIGPD 44 (70)
T ss_pred CCCEEEEEeCC
Confidence 46666666654
No 182
>PRK00536 speE spermidine synthase; Provisional
Probab=57.35 E-value=13 Score=25.81 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 043826 18 LKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~ 37 (104)
....+.++++|+|||.++..
T Consensus 151 ~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 151 IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred hHHHHHHHHhcCCCcEEEEC
Confidence 56778999999999998764
No 183
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=56.23 E-value=28 Score=18.70 Aligned_cols=28 Identities=7% Similarity=0.053 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 13 NDEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
+.++....+-+..++|+||..+.++...
T Consensus 8 ~~~~p~~~il~~~~~L~~Ge~l~lv~d~ 35 (69)
T PF10006_consen 8 PPPEPHERILEALDELPPGETLELVNDH 35 (69)
T ss_pred CCcChHHHHHHHHHcCCCCCEEEEEeCC
Confidence 4555667777788889999888776643
No 184
>PF13592 HTH_33: Winged helix-turn helix
Probab=56.23 E-value=13 Score=19.57 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=22.1
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
-|..+|...+..+|...||+-.+-.+.
T Consensus 18 fgv~ys~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 18 FGVKYSPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred HCCEEcHHHHHHHHHHcCCccccCCCC
Confidence 377789999999999999997765443
No 185
>PF15585 Imm46: Immunity protein 46
Probab=55.26 E-value=32 Score=21.45 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=25.2
Q ss_pred EEeccccccCChHH---HHHHHHHHHhhCCCC--CEEEEEeee
Q 043826 3 NCTLTILHDWNDEH---CLKLLKNCYKSIPED--GKVIVVELM 40 (104)
Q Consensus 3 y~~~~vlH~~~d~~---~~~iL~~~~~aL~pg--g~l~i~d~~ 40 (104)
|+--..+++...++ ...+++++.+ +.|| |.|++.|--
T Consensus 53 ~l~~~g~~NHr~~~~~eii~lf~~i~e-~aPGSYGlLy~rDDE 94 (129)
T PF15585_consen 53 FLHFGGLSNHRGQEAPEIIELFERIAE-IAPGSYGLLYIRDDE 94 (129)
T ss_pred EEEEccccCCCccchHHHHHHHHHHHH-hCCCceeEEEEecCC
Confidence 44445566666544 7888999988 4666 778887743
No 186
>PRK13605 endoribonuclease SymE; Provisional
Probab=54.72 E-value=16 Score=22.17 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=11.7
Q ss_pred HHHHHhCCCCceEEEE
Q 043826 77 MTLATGAGFSGMSCER 92 (104)
Q Consensus 77 ~~ll~~aGf~~~~~~~ 92 (104)
-.||++|||..-.-..
T Consensus 44 G~WLeeAGF~tG~~V~ 59 (113)
T PRK13605 44 GQWLEAAGFATGTAVD 59 (113)
T ss_pred chhHHhhCCCCCCeEE
Confidence 3699999999654443
No 187
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=54.62 E-value=17 Score=19.43 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCCeEE
Q 043826 73 RHEFMTLATGAGFSGMSCERAIGNLWV 99 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~~~~v 99 (104)
..++.+|+++.|++.+.+...++.+.+
T Consensus 40 ~~di~~~~~~~g~~~~~~~~~~~~~~i 66 (70)
T PF01206_consen 40 VEDIPRWCEENGYEVVEVEEEGGEYRI 66 (70)
T ss_dssp HHHHHHHHHHHTEEEEEEEESSSSEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence 457889999999998888775555443
No 188
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.33 E-value=66 Score=22.54 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCC-ceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD-GKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~-g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
..++--+...|+|||-+...-.-.+++.. |-+ .++ -...++.-++++++..||+++++.++
T Consensus 205 e~~~~~aa~~L~~gGlfaFSvE~l~~~~~----------f~l-----~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 205 EGLFAGAAGLLAPGGLFAFSVETLPDDGG----------FVL-----GPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhHHHHHHHhcCCCceEEEEecccCCCCC----------eec-----chhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 45677888999999988654433322210 100 011 12356778899999999999988775
No 189
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=54.04 E-value=26 Score=24.06 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=9.9
Q ss_pred CCCCEEEEEeeecC
Q 043826 29 PEDGKVIVVELMLP 42 (104)
Q Consensus 29 ~pgg~l~i~d~~~~ 42 (104)
.|||..+|+|...+
T Consensus 91 gP~GvaiiVe~lTD 104 (238)
T TIGR01033 91 APGGVAIIVECLTD 104 (238)
T ss_pred cCCceEEEEEEecC
Confidence 37777777777664
No 190
>PRK06132 hypothetical protein; Provisional
Probab=53.47 E-value=16 Score=26.75 Aligned_cols=24 Identities=0% Similarity=0.094 Sum_probs=21.6
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.++.+++...|.||+.|+|.|.-.
T Consensus 321 ~~~~~~i~~~l~~gssl~vsD~~~ 344 (359)
T PRK06132 321 PDFRRRIAALLTPGSTLVITDQGI 344 (359)
T ss_pred HHHHHHHHHhcCCCceEEEcCCCC
Confidence 578999999999999999999755
No 191
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=53.27 E-value=9.6 Score=19.14 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=14.6
Q ss_pred CHHHHHHHHHhCCCCceE
Q 043826 72 TRHEFMTLATGAGFSGMS 89 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~ 89 (104)
=+.||.++|..+|.+..+
T Consensus 27 lP~eW~~ll~~sgis~~e 44 (46)
T cd01093 27 LPEEWQRLLKSSGITKEE 44 (46)
T ss_pred CCHHHHHHHHHcCCCHHH
Confidence 357999999999987554
No 192
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=53.13 E-value=22 Score=23.13 Aligned_cols=64 Identities=14% Similarity=0.025 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
.+.-..+++-+++.|.|||+++| +.+-|.. +..-+. .|..-.....-..|..+||+..+-+-.
T Consensus 62 s~~E~~l~~~~~~~l~pg~~lfV-eY~~D~e----------T~~~L~------~G~pp~~TrLG~~Ll~~GFtwfKdWYf 124 (170)
T PF06557_consen 62 SPLEDELYKLFSRYLEPGGRLFV-EYVEDRE----------TRRQLQ------RGVPPAETRLGFSLLKAGFTWFKDWYF 124 (170)
T ss_dssp SHHHHHHHHHHHTT----SEEEE-E-TT-HH----------HHHHHH------TT--GGGSHHHHHHHTTT--EEEEEE-
T ss_pred ChHHHHHHHHHHHHhhhcCeEEE-EEecCHH----------HHHHHH------cCCCcccchhHHHHHhCCcEEEeeeec
Confidence 33457899999999999999965 4443321 011111 222222335666777899998887665
Q ss_pred C
Q 043826 94 I 94 (104)
Q Consensus 94 ~ 94 (104)
+
T Consensus 125 P 125 (170)
T PF06557_consen 125 P 125 (170)
T ss_dssp -
T ss_pred c
Confidence 4
No 193
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=52.81 E-value=34 Score=18.09 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCCeEEEEEE
Q 043826 73 RHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 103 (104)
..++.+|+++.|++. .+....+ ...+..+
T Consensus 38 ~~~i~~~~~~~G~~~-~~~~~~~-~~~i~I~ 66 (67)
T cd03421 38 KENVSRFAESRGYEV-SVEEKGG-EFEITIT 66 (67)
T ss_pred HHHHHHHHHHcCCEE-EEEecCC-EEEEEEE
Confidence 447788889999998 5555444 3333333
No 194
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=52.64 E-value=9.9 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.277 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
...+-|+++.+.|+|||.+.|+=..
T Consensus 70 TTl~Al~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 70 TTLKALEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHHHHHHHhhccCCEEEEEEeC
Confidence 4678899999999999999887653
No 195
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=52.40 E-value=4.6 Score=27.81 Aligned_cols=32 Identities=9% Similarity=0.297 Sum_probs=24.5
Q ss_pred ccccCChHHHHHHHHHHHhhC-CCCCEEEEEeeec
Q 043826 8 ILHDWNDEHCLKLLKNCYKSI-PEDGKVIVVELML 41 (104)
Q Consensus 8 vlH~~~d~~~~~iL~~~~~aL-~pgg~l~i~d~~~ 41 (104)
|+=|.|++ -..+.++.++| +|||++.+.-+.+
T Consensus 117 vfLDlp~P--w~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 117 VFLDLPDP--WEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEEESSSG--GGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred EEEeCCCH--HHHHHHHHHHHhcCCceEEEECCCH
Confidence 44477776 67889999999 8999998876544
No 196
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=51.93 E-value=22 Score=25.03 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=19.1
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~ 37 (104)
..+.++..+||.++.+.|+||+++++-
T Consensus 203 g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 203 GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 344456799999999999999988765
No 197
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=51.68 E-value=34 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHhhCCCC----CEEEEEee
Q 043826 13 NDEHCLKLLKNCYKSIPED----GKVIVVEL 39 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pg----g~l~i~d~ 39 (104)
+|++...+++.+.++...| |++++.+-
T Consensus 66 ~D~~v~~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10858 66 PDDIVDTCVDTIIRTAQTGKIGDGKIFVFDV 96 (112)
T ss_pred ChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 5777888888888888753 99999874
No 198
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=51.51 E-value=28 Score=25.06 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.5
Q ss_pred ccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826 8 ILHDWND--EHCLKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 8 vlH~~~d--~~~~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
++-.||- +++...|..+...|+|||.+++.-...
T Consensus 80 ~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 80 LIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred EEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 3445653 358899999999999999999987544
No 199
>PLN02823 spermine synthase
Probab=50.93 E-value=17 Score=26.15 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=15.4
Q ss_pred HHHHH-HHHhhCCCCCEEEE
Q 043826 18 LKLLK-NCYKSIPEDGKVIV 36 (104)
Q Consensus 18 ~~iL~-~~~~aL~pgg~l~i 36 (104)
.+.++ .+.+.|+|||.+++
T Consensus 199 ~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 199 KSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 56777 88999999998765
No 200
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=50.70 E-value=18 Score=26.47 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
.+++++++++++|||..++.|.+.-
T Consensus 195 ~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 195 EKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred HHHHHHHhcccCCCceEEeHHHHHh
Confidence 6899999999999999999998743
No 201
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=50.69 E-value=29 Score=23.48 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
+.-...+..+.+.|+|||.+++ |.+
T Consensus 155 ~~y~~~~~~~~~ll~~GG~ii~-dn~ 179 (234)
T PLN02781 155 PNYVHFHEQLLKLVKVGGIIAF-DNT 179 (234)
T ss_pred HHHHHHHHHHHHhcCCCeEEEE-EcC
Confidence 4556888999999999997655 544
No 202
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=49.99 E-value=14 Score=23.00 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=19.9
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEE
Q 043826 8 ILHDWNDEHCLKLLKNCYKSIPEDGKV 34 (104)
Q Consensus 8 vlH~~~d~~~~~iL~~~~~aL~pgg~l 34 (104)
-||+....-...|.+++.+||..|..+
T Consensus 13 HLHHiEPKRVKvIVeEv~qaltegklL 39 (149)
T PF03574_consen 13 HLHHIEPKRVKVIVEEVRQALTEGKLL 39 (149)
T ss_dssp HHTT--HHHHHHHHHHHHHHHSSS---
T ss_pred cccccCchhhhhHHHHHHHHHhhhhHH
Confidence 478998888999999999999988766
No 203
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=49.68 E-value=1e+02 Score=22.59 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 94 (104)
..+-|+.|+..|+|||.-+-.-++.-.-.+.+ +. . .-.+.+-|.+++..+.+.-||++++...+.
T Consensus 275 ileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~---~-~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 275 ILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GV---E-NEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred HHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CC---c-ccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 57889999999999998876665432111110 00 0 013556789999999999999998776543
No 204
>PRK06852 aldolase; Validated
Probab=49.37 E-value=17 Score=25.89 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.8
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
.-+|++++....+.|..+.++..||++|+=
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~sGr~~ivp 37 (304)
T PRK06852 8 PLDVPEEMREEYIENYLEITKGTGRLMLFA 37 (304)
T ss_pred cCcCChhcChhHHHHHHHhhCCCCCEEEEe
Confidence 348888888999999999999999988764
No 205
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=49.29 E-value=19 Score=21.24 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCCceEEE
Q 043826 73 RHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~ 91 (104)
...|++.|+++||++.-+.
T Consensus 81 ~~SW~~~l~~~g~~v~~~~ 99 (103)
T cd03413 81 PDSWKSILEAAGIKVETVL 99 (103)
T ss_pred chhHHHHHHHCCCeeEEEe
Confidence 4589999999999877543
No 206
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=49.05 E-value=23 Score=20.11 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.1
Q ss_pred CceecCHHHHHHHHHhCCCCceEEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~ 91 (104)
+.+..+.+++.+.|.+|||...+-.
T Consensus 55 GaKH~~q~~Lnq~L~~Ag~~~LK~K 79 (84)
T PF13319_consen 55 GAKHFDQEELNQRLIDAGWEGLKDK 79 (84)
T ss_pred ccccCCHHHHHHHHHHcCccccchh
Confidence 6677888999999999999877544
No 207
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=48.99 E-value=35 Score=17.53 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=26.8
Q ss_pred cccccCChHHHHHHHHHHHhhCC------CCCEEEEEeeecCC
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIP------EDGKVIVVELMLPE 43 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~------pgg~l~i~d~~~~~ 43 (104)
.++...++++.+++++.+.+++. |+...++++.+.++
T Consensus 7 ~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~ 49 (61)
T PRK02220 7 KLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSKN 49 (61)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeChh
Confidence 34556789999999999998885 45666666655443
No 208
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=48.88 E-value=12 Score=21.76 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG 82 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~ 82 (104)
+++.++|+-+.+.=.+=|.-.++|.+........ ....+.-+-.++-|+.++..+|++++.+
T Consensus 4 ~~a~~il~~V~~~~~~~~~~~ivdvlrGs~~~~i------~~~~~~~l~~yG~gk~~~~~~~~~li~~ 65 (106)
T PF09382_consen 4 EEAKKILSCVQRLKQRFGLSQIVDVLRGSKSKKI------REKGHDQLPTYGIGKDMSKDDWERLIRQ 65 (106)
T ss_dssp HHHHHHHHHHHHTTT-S-HHHHHHHHTT-S-CCC------HHTTGGGSTTTTTTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHhccchhh------hhcCCCcCcccCCcccCCHHHHHHHHHH
Confidence 3577888877775344466667776654433211 1122222333445788999999988874
No 209
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=48.50 E-value=58 Score=22.79 Aligned_cols=63 Identities=10% Similarity=-0.031 Sum_probs=35.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceE
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMS 89 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 89 (104)
.+.+++..+.+++|...+++.+-..++. .........+..++..+ +..++++|+++.|.+.+.
T Consensus 214 ~~~~~~~l~~l~~g~~eimcHPg~~d~~l~~~s~~~~~R~~E~~~L---------~sp~~~~~l~~~~I~Li~ 277 (283)
T TIGR03473 214 EARLLAALERLPEGVSEIYFHPATAQDAEITPSMPGYRHADELAAL---------LSPRVKAALKELGITLGG 277 (283)
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCChHhhccCCCCCccHHHHHHH---------cCHHHHHHHHHCCCEEec
Confidence 3567788888888887777765433221 00000000112233322 356999999999977654
No 210
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=48.49 E-value=14 Score=21.39 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCCceEEE
Q 043826 73 RHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~ 91 (104)
+.|+.++|.+.||..++.-
T Consensus 3 Erel~~~L~~~Gf~v~R~~ 21 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRAA 21 (88)
T ss_dssp HHHHHHHHHHTT-EEEEBS
T ss_pred HHHHHHHHHhCCcEEEEec
Confidence 5688999999999888643
No 211
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=48.01 E-value=16 Score=21.06 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=33.7
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~ 86 (104)
+..+|+++.+++.-.+= +-|...+.+.---...-++.-........-.+..-..+.-+..|+.+|..+++++.||+
T Consensus 17 ~~l~~~e~lr~ia~~Rl-~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~~d~~~i~~lG~~ 92 (93)
T PF06968_consen 17 PPLSDEEFLRIIAAFRL-LLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVDEDIEMIEKLGLE 92 (93)
T ss_dssp ----HHHHHHHHHHHHH-HSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHHHHHHHHHHTT-E
T ss_pred CCCCHHHHHHHHHHHHH-HCCCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHHHHHHHHHHcCCC
Confidence 45678888888885444 44555555543221111110000000000000000011123458999999999999985
No 212
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=47.85 E-value=18 Score=25.40 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 043826 18 LKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~ 37 (104)
....+.|+++|+|+|.++..
T Consensus 170 ~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 170 EEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 68899999999999998777
No 213
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=47.80 E-value=31 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.527 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
.+.++++++.+.++.||.++++|.-.+
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYP 198 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCC
Confidence 478999999999998899999998763
No 214
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=47.16 E-value=7.5 Score=27.15 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHHHHhhC----CCCCEEEEEee
Q 043826 18 LKLLKNCYKSI----PEDGKVIVVEL 39 (104)
Q Consensus 18 ~~iL~~~~~aL----~pgg~l~i~d~ 39 (104)
.+||+++.+.+ +|||+++-.-.
T Consensus 195 ~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 195 REILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred HHHHHHHHHhhcccccCCCeEEEEec
Confidence 68999999999 99999976665
No 215
>PRK00110 hypothetical protein; Validated
Probab=46.98 E-value=44 Score=23.09 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=12.8
Q ss_pred CHHHHHHHHHhCCCCceEE
Q 043826 72 TRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~ 90 (104)
+.+++....-++|-+++..
T Consensus 146 ~~d~~~e~aieaGaeDv~~ 164 (245)
T PRK00110 146 DEDELMEAALEAGAEDVET 164 (245)
T ss_pred CHHHHHHHHHhCCCCEeec
Confidence 3566777777788777643
No 216
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=46.63 E-value=27 Score=25.12 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=23.4
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
++||..+|. ...++.+.+.++|+|+++++...
T Consensus 277 ~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 277 ALLKLETDR--PDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred cccccccCc--hHHHHHHHHHhccCCEEEEEcCC
Confidence 344444554 55788899999999999998643
No 217
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.57 E-value=13 Score=25.40 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
+.++.++..+-|+|||+++|-
T Consensus 172 a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 172 ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccccHHHHHHhhccCCeEEEe
Confidence 467888889999999999874
No 218
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=46.23 E-value=48 Score=17.83 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCCceEEEEeCC
Q 043826 73 RHEFMTLATGAGFSGMSCERAIG 95 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~ 95 (104)
.+++.+|+++.|++.......++
T Consensus 39 ~~ni~~~~~~~g~~v~~~~~~~~ 61 (69)
T cd03422 39 INNIPIDARNHGYKVLAIEQSGP 61 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 45778899999999887665543
No 219
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.85 E-value=25 Score=19.41 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 13 NDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
.|+...+++-++-+++.||++++|.|.
T Consensus 12 cDp~~kqlilnmd~sm~~~skfii~eL 38 (71)
T KOG3451|consen 12 CDPAFKQLILNMDDSMQLGSKFIIEEL 38 (71)
T ss_pred cChhHHHHhhhccccCCCCCCeeEEEe
Confidence 356678889999999999999988774
No 220
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=44.84 E-value=19 Score=23.71 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=35.7
Q ss_pred hhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCc--------eecCHHHHHHHHHhCCCCceEEEEeC
Q 043826 26 KSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDG--------KERTRHEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 26 ~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g--------~~rt~~e~~~ll~~aGf~~~~~~~~~ 94 (104)
++++||-+++|+|-++....+-. ....+ +... ++ -+++...+++.+.+.|+....+....
T Consensus 112 ~~i~~G~rVlIVDDviaTGgT~~------a~~~l--v~~a-Ga~vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~ 179 (189)
T PRK09219 112 KFLSEGDRVLIIDDFLANGQAAL------GLIDI--IEQA-GAKVAGIGIVIEKSFQDGRKLLEEKGYRVESLARIA 179 (189)
T ss_pred hhCCCCCEEEEEeehhhcChHHH------HHHHH--HHHC-CCEEEEEEEEEEccCccHHHHHHhcCCcEEEEEEee
Confidence 46789999999999886543211 11111 1000 11 23444567888888898877776653
No 221
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=44.79 E-value=24 Score=14.61 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=8.4
Q ss_pred HHHHHHHhhCCC
Q 043826 19 KLLKNCYKSIPE 30 (104)
Q Consensus 19 ~iL~~~~~aL~p 30 (104)
+||++|..+--|
T Consensus 4 eiL~~CI~sAmP 15 (20)
T PF05924_consen 4 EILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHCTS-
T ss_pred HHHHHHHHHhcc
Confidence 789988865544
No 222
>PRK10556 hypothetical protein; Provisional
Probab=44.68 E-value=27 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.9
Q ss_pred CHHHHHHHHHhCCCCceEEEEe
Q 043826 72 TRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~ 93 (104)
.+.|..+.|+.|||+...+..-
T Consensus 4 RPDEVArVLe~aGF~~D~vt~~ 25 (111)
T PRK10556 4 RPDEVARVLEKAGFTVDVVTQK 25 (111)
T ss_pred ChHHHHHHHHhcCceEEEeech
Confidence 3679999999999998776653
No 223
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=44.53 E-value=25 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIV 36 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i 36 (104)
-.++++++.+.|+|||.+++
T Consensus 248 ~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 46688899999999999865
No 224
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.43 E-value=21 Score=24.09 Aligned_cols=18 Identities=6% Similarity=0.207 Sum_probs=14.4
Q ss_pred HHHHhhCCCCCEEEEEee
Q 043826 22 KNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 22 ~~~~~aL~pgg~l~i~d~ 39 (104)
+...+.|+|||++++-.-
T Consensus 153 ~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 153 EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHHhcccCCEEEEEEc
Confidence 455668999999998775
No 225
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=44.21 E-value=30 Score=30.18 Aligned_cols=29 Identities=14% Similarity=0.065 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCce----EEEEeCCCeEEEEEEC
Q 043826 76 FMTLATGAGFSGM----SCERAIGNLWVMEFYK 104 (104)
Q Consensus 76 ~~~ll~~aGf~~~----~~~~~~~~~~vie~~~ 104 (104)
++.++..+|+.+. +|.+..++++|||+.|
T Consensus 1569 f~~if~~~gLd~~lfPYrV~aT~pGcGVIEviP 1601 (1803)
T KOG0902|consen 1569 FKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIP 1601 (1803)
T ss_pred HHHHHHHcCCceEEeeeeeeccCCCCceEEeCC
Confidence 6778889999864 7778889999999976
No 226
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=43.79 E-value=1.2e+02 Score=22.16 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 12 WNDEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 12 ~~d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
|.+++...-++++.+++...|..++++..
T Consensus 76 ~~~~~~i~~~k~l~davh~~G~~i~~QL~ 104 (382)
T cd02931 76 YNPTAFIRTAKEMTERVHAYGTKIFLQLT 104 (382)
T ss_pred cCCHHHhHHHHHHHHHHHHcCCEEEEEcc
Confidence 55666789999999999987767777754
No 227
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=43.37 E-value=53 Score=19.75 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHhhCCC----CCEEEEEee
Q 043826 13 NDEHCLKLLKNCYKSIPE----DGKVIVVEL 39 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~p----gg~l~i~d~ 39 (104)
+|+++.++++-+.++... +|++++.+-
T Consensus 66 ~de~ve~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10665 66 ADDQLDEVIDIISKAAYTGKIGDGKIFVAEL 96 (112)
T ss_pred ChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 577788888888888764 499998874
No 228
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=42.43 E-value=31 Score=23.74 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=15.8
Q ss_pred CHHHHHHHHHhCCCCceEE
Q 043826 72 TRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~ 90 (104)
++.+|...|+++||+....
T Consensus 217 dedswk~il~~~G~~v~~~ 235 (265)
T COG4822 217 DEDSWKNILEKNGFKVEVY 235 (265)
T ss_pred chHHHHHHHHhCCceeEEE
Confidence 5688999999999998543
No 229
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=42.24 E-value=25 Score=20.48 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHhhCCC---C-CEEEEEee
Q 043826 13 NDEHCLKLLKNCYKSIPE---D-GKVIVVEL 39 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~p---g-g~l~i~d~ 39 (104)
+|+++.++++.+.+++.. | |++++.+-
T Consensus 63 ~d~~v~~iv~~I~~~~~tg~~GdGkIfV~~V 93 (102)
T PF00543_consen 63 PDEDVEEIVEAISEAARTGEPGDGKIFVSPV 93 (102)
T ss_dssp EGGGHHHHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred CHHhHHHHHHHHHHhccCCCCCCEEEEEEEh
Confidence 466778888888777764 3 89988874
No 230
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=42.19 E-value=36 Score=16.10 Aligned_cols=18 Identities=6% Similarity=0.082 Sum_probs=14.8
Q ss_pred cCHHHHHHHHHhCCCCce
Q 043826 71 RTRHEFMTLATGAGFSGM 88 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~ 88 (104)
.|.+++++||++.|...-
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 578999999999996543
No 231
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=42.11 E-value=56 Score=17.50 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCCe
Q 043826 73 RHEFMTLATGAGFSGMSCERAIGNL 97 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~~~ 97 (104)
..++.+|+++.|++........+.+
T Consensus 39 ~~di~~~~~~~G~~~~~~~~~~~~~ 63 (69)
T cd03420 39 ARDAQAWCKSTGNTLISLETEKGKV 63 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCEE
Confidence 4578889999999988766544333
No 232
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=41.91 E-value=14 Score=24.33 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d 38 (104)
...|+.+++.|+|||.+.+.-
T Consensus 113 ~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 113 PEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred chHHHHHHHHcCCCCEEEEEe
Confidence 578999999999999986543
No 233
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=41.61 E-value=35 Score=19.15 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHhhCCCC-CEEEEEe
Q 043826 13 NDEHCLKLLKNCYKSIPED-GKVIVVE 38 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pg-g~l~i~d 38 (104)
+|..+.++.+.+.+||..+ |.|-+.|
T Consensus 18 s~~s~dev~~~v~~Al~~~~~~l~LtD 44 (74)
T PF11305_consen 18 SDQSADEVEAAVTDALADGSGVLTLTD 44 (74)
T ss_pred cCCCHHHHHHHHHHHHhCCCceEEEEe
Confidence 3455778999999999988 7776666
No 234
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=41.55 E-value=10 Score=28.90 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=28.6
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
++++..|.+.+ ..+|-++-+.|+|||.++..-+-+.
T Consensus 188 src~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 188 SRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 46777888766 4689999999999999988776544
No 235
>PRK11018 hypothetical protein; Provisional
Probab=41.52 E-value=62 Score=17.92 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCCceEEEEeCC
Q 043826 73 RHEFMTLATGAGFSGMSCERAIG 95 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~ 95 (104)
..++.+|+++.|+++.......+
T Consensus 48 ~~di~~~~~~~G~~v~~~~~~~g 70 (78)
T PRK11018 48 INNIPLDARNHGYTVLDIQQDGP 70 (78)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 45778889999999887665443
No 236
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=41.46 E-value=31 Score=23.90 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=18.0
Q ss_pred CHHHHHHHHHhCCCCceEEEEe
Q 043826 72 TRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~ 93 (104)
+..++.++++++||.++-....
T Consensus 171 ~~~~~~~~~~~~G~~v~~t~~~ 192 (260)
T COG0566 171 LARTLLELLKEAGFWVVATSLD 192 (260)
T ss_pred cHHHHHHHHHHcCeEEEEECCC
Confidence 5778999999999998866544
No 237
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=41.13 E-value=48 Score=19.64 Aligned_cols=21 Identities=5% Similarity=0.232 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 043826 19 KLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~ 39 (104)
..++++.++|+||+..++...
T Consensus 43 ~~~~ev~~~L~~GssAl~~lv 63 (102)
T PF06897_consen 43 EFIKEVGEALKPGSSALFLLV 63 (102)
T ss_pred HHHHHHHhhcCCCceEEEEEe
Confidence 579999999999988877764
No 238
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=40.83 E-value=30 Score=19.08 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=12.9
Q ss_pred CceecCHHHHHHHHHhCCCCce
Q 043826 67 DGKERTRHEFMTLATGAGFSGM 88 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~ 88 (104)
+....|.+|+.+.|++.||.+.
T Consensus 16 ~~~i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 16 EHEISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp HS---SHHHHHHHHHHTT-T--
T ss_pred HCCcCCHHHHHHHHHHcCCCcc
Confidence 3445788888888888888743
No 239
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.67 E-value=60 Score=17.38 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCCe
Q 043826 73 RHEFMTLATGAGFSGMSCERAIGNL 97 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~~~ 97 (104)
.+++.+|+++.|++.+.....++.+
T Consensus 39 ~~di~~~~~~~g~~~~~~~~~~~~~ 63 (69)
T cd03423 39 TRDIPKFCTFLGHELLAQETEDEPY 63 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEcCCEE
Confidence 4577888999999988776644433
No 240
>PRK12378 hypothetical protein; Provisional
Probab=40.36 E-value=47 Score=22.79 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=10.5
Q ss_pred CCCCEEEEEeeecC
Q 043826 29 PEDGKVIVVELMLP 42 (104)
Q Consensus 29 ~pgg~l~i~d~~~~ 42 (104)
.|||..+|+|.+.+
T Consensus 88 gPgGvaiiVe~lTD 101 (235)
T PRK12378 88 GPNGVMVIVECLTD 101 (235)
T ss_pred cCCCcEEEEEECCC
Confidence 47888888887664
No 241
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=40.10 E-value=38 Score=16.86 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHhCCCCce
Q 043826 71 RTRHEFMTLATGAGFSGM 88 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~ 88 (104)
.+.+++.++..++||...
T Consensus 27 ~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 27 QNPEEVVALAREAGYDFT 44 (49)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 478999999999999753
No 242
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=40.09 E-value=41 Score=22.46 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 043826 12 WNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP 45 (104)
Q Consensus 12 ~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~ 45 (104)
++++-..++ ++....|+||.+++-...+.+...
T Consensus 133 F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~~~~~ 165 (205)
T PF08123_consen 133 FDPDLNLAL-AELLLELKPGARIISTKPFCPRRR 165 (205)
T ss_dssp T-HHHHHHH-HHHHTTS-TT-EEEESS-SS-TT-
T ss_pred cCHHHHHHH-HHHHhcCCCCCEEEECCCcCCCCc
Confidence 455544544 777788999999988887776654
No 243
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.05 E-value=58 Score=17.04 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.5
Q ss_pred CHHHHHHHHHhCCCCceEEEEeCC
Q 043826 72 TRHEFMTLATGAGFSGMSCERAIG 95 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~~~ 95 (104)
+..++.+|+++.|++........+
T Consensus 38 ~~~~i~~~~~~~g~~~~~~~~~~~ 61 (69)
T cd00291 38 AVEDIPAWAKETGHEVLEVEEEGG 61 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeCC
Confidence 356788899999999877666554
No 244
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=40.05 E-value=28 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=20.4
Q ss_pred eecCHHHHHHHHHhCCCCceEEEEe
Q 043826 69 KERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 69 ~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
-+-++.++++.|++.||+++.....
T Consensus 6 VE~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 6 VEEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred ecCCchHHHHHHHHCCCEEEecCCc
Confidence 4567889999999999999877654
No 245
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=39.70 E-value=16 Score=21.55 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
...++.+.+.++|+|+++++-...
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 468888999999999999998655
No 246
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=39.46 E-value=76 Score=22.25 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=15.3
Q ss_pred hhCCCCCEEEEEeeecCCC
Q 043826 26 KSIPEDGKVIVVELMLPEV 44 (104)
Q Consensus 26 ~aL~pgg~l~i~d~~~~~~ 44 (104)
+++++|.+++|+|-++...
T Consensus 189 ~~l~~G~rVLIVDDv~~TG 207 (268)
T TIGR01743 189 RSLKTGSKVLIIDDFMKAG 207 (268)
T ss_pred hhCCCcCEEEEEeeecccC
Confidence 5788899999999887544
No 247
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=39.44 E-value=43 Score=22.78 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 043826 18 LKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d 38 (104)
...|+.+.+.|+|||.+.+.-
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHHHHHHHHHccCCCEEEEEe
Confidence 578999999999999996653
No 248
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=38.75 E-value=59 Score=23.27 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=25.7
Q ss_pred ccccCC--hHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 8 ILHDWN--DEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 8 vlH~~~--d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
++--|| ..++...|.++.+.++|||.+++.-..
T Consensus 41 ~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~ 75 (300)
T COG2813 41 VLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEK 75 (300)
T ss_pred EEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecc
Confidence 344555 346889999999999999999988743
No 249
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=38.37 E-value=30 Score=22.80 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=35.0
Q ss_pred hhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCc--------eecCHHHHHHHHHhCCCCceEEEEeC
Q 043826 26 KSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDG--------KERTRHEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 26 ~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g--------~~rt~~e~~~ll~~aGf~~~~~~~~~ 94 (104)
++++||.+++|+|-++....+.. ....+ +... ++ -.|+...+++.+++.|.....+....
T Consensus 112 ~~l~~G~rVLIVDDvvtTGgT~~------a~~~l--l~~a-Ga~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~~ 179 (191)
T TIGR01744 112 EFLSDQDRVLIIDDFLANGQAAH------GLVDI--AKQA-GAKIAGIGIVIEKSFQNGRQELVELGYRVESLARIQ 179 (191)
T ss_pred HhCCCcCEEEEEEehhccChHHH------HHHHH--HHHC-CCEEEEEEEEEEecCccHHHHHHhcCCcEEEEEEEe
Confidence 45789999999999886553211 11111 1100 11 23554457777888888877666553
No 250
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.08 E-value=66 Score=21.80 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.2
Q ss_pred CceecCHHHHHHHHHhCCCCceEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~ 90 (104)
+|..++.+++.++++ .|...+-+
T Consensus 198 ~GGi~s~edi~~l~~-~G~~~viv 220 (234)
T PRK13587 198 SGGIRHQQDIQRLAS-LNVHAAII 220 (234)
T ss_pred eCCCCCHHHHHHHHH-cCCCEEEE
Confidence 788899999999985 78765533
No 251
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=38.02 E-value=1.6e+02 Score=21.57 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=43.0
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC----CC---CcccchhhhhhhhhhhcCCCceecCHHHHHHH--
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP----NT---SIESKSNFHFDVLMMIQRPDGKERTRHEFMTL-- 79 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~----~~---~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~l-- 79 (104)
.--|+|++ ..-++++.+++...|-.++++..-.... .+ +..+-.....+.. ....-++-|.+|+.++
T Consensus 74 ~~l~~d~~-i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~---~~~~pr~mt~~eI~~ii~ 149 (363)
T COG1902 74 PGLWSDAQ-IPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGG---RRATPRELTEEEIEEVIE 149 (363)
T ss_pred CccCChhH-hHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccC---CCCCCccCCHHHHHHHHH
Confidence 33456655 8889999999988555555554322211 00 0000000001100 0112455677776554
Q ss_pred --------HHhCCCCceEEEEeC
Q 043826 80 --------ATGAGFSGMSCERAI 94 (104)
Q Consensus 80 --------l~~aGf~~~~~~~~~ 94 (104)
..+|||..++++..-
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH~Ah 172 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIHGAH 172 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEeecc
Confidence 457899999998653
No 252
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=37.98 E-value=42 Score=17.86 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.2
Q ss_pred ceecCHHHHHHHHHhCCCCce
Q 043826 68 GKERTRHEFMTLATGAGFSGM 88 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~ 88 (104)
|..-+.++..++|+..||+..
T Consensus 16 G~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeEE
Confidence 556789999999999999874
No 253
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=37.46 E-value=48 Score=22.06 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=17.5
Q ss_pred CHHHHHHHHHhCCCCceEEEEe
Q 043826 72 TRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~ 93 (104)
..++|.+-|+++||+.......
T Consensus 29 A~~~Wn~~fe~~Gf~~a~~v~~ 50 (197)
T cd04276 29 GVLYWNKAFEKAGFKNAIIVKV 50 (197)
T ss_pred HHHHHHHHHHhcCCCccEEEEe
Confidence 4678999999999998755443
No 254
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=37.34 E-value=71 Score=22.62 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHhhC---CCCCEEEEE-eeecCCCCCCCcccc---------hhhhhhh--hhhhcCCCceecCHHHH
Q 043826 12 WNDEHCLKLLKNCYKSI---PEDGKVIVV-ELMLPEVPNTSIESK---------SNFHFDV--LMMIQRPDGKERTRHEF 76 (104)
Q Consensus 12 ~~d~~~~~iL~~~~~aL---~pgg~l~i~-d~~~~~~~~~~~~~~---------~~~~~~l--~m~~~~~~g~~rt~~e~ 76 (104)
|+.+++.+..++.-+.. -..|+.+-+ |.--|.-+.++..-. +....|. ....-+.+...-+.+++
T Consensus 97 ~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i 176 (285)
T COG1831 97 RSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEI 176 (285)
T ss_pred cChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Confidence 66666666665544333 235566655 655555554431100 0011121 12222333444566788
Q ss_pred HHHHHhCCCCceEEEEeC
Q 043826 77 MTLATGAGFSGMSCERAI 94 (104)
Q Consensus 77 ~~ll~~aGf~~~~~~~~~ 94 (104)
.+|++++|++..+|+.--
T Consensus 177 ~~~ak~~G~~~~~VVkHh 194 (285)
T COG1831 177 AEMAKEAGIKPYRVVKHH 194 (285)
T ss_pred HHHHHHhCCCcceeEeec
Confidence 999999999888877653
No 255
>PRK04280 arginine repressor; Provisional
Probab=37.03 E-value=35 Score=21.62 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=16.9
Q ss_pred CceecCHHHHHHHHHhCCCCce
Q 043826 67 DGKERTRHEFMTLATGAGFSGM 88 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~ 88 (104)
+-...|.+|+.+.|++.||...
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~vT 36 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNVT 36 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCee
Confidence 4445788899999999998853
No 256
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=36.29 E-value=47 Score=19.99 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=16.1
Q ss_pred CHHHHHHHHHhCCCCceEEEE
Q 043826 72 TRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~ 92 (104)
.+.|+.+.|+.+||+...+..
T Consensus 4 rpdeva~vle~~gf~~d~v~~ 24 (111)
T PF09400_consen 4 RPDEVARVLEKAGFERDYVTD 24 (111)
T ss_dssp -HHHHHHHHHHTT-EEEEEET
T ss_pred ChHHHHHHHHhcCceEEEeec
Confidence 367999999999999876654
No 257
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=35.95 E-value=41 Score=18.14 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=18.9
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~ 37 (104)
|=+|||+.. +=-+..|+.|..|-.=++.
T Consensus 34 WKmhHWn~q---rkt~~fY~~LekgeisVv~ 61 (63)
T PLN03155 34 WKMHHWNEQ---RKTRSFYDLLEKGEISVVV 61 (63)
T ss_pred HHHhhhhhH---HHHHHHHHHHhcCceEEee
Confidence 347999885 5557778888877544444
No 258
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=35.92 E-value=31 Score=18.00 Aligned_cols=17 Identities=6% Similarity=0.132 Sum_probs=12.0
Q ss_pred cCHHHHHHHHHhCCCCc
Q 043826 71 RTRHEFMTLATGAGFSG 87 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~ 87 (104)
+|.+++.+||...||..
T Consensus 4 w~~~~v~~WL~~~gl~~ 20 (66)
T PF07647_consen 4 WSPEDVAEWLKSLGLEQ 20 (66)
T ss_dssp HCHHHHHHHHHHTTCGG
T ss_pred CCHHHHHHHHHHCCcHH
Confidence 46777777777777753
No 259
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=35.74 E-value=77 Score=17.24 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHhhCCCC-CEEEEEee
Q 043826 12 WNDEHCLKLLKNCYKSIPED-GKVIVVEL 39 (104)
Q Consensus 12 ~~d~~~~~iL~~~~~aL~pg-g~l~i~d~ 39 (104)
.+..+...+++++.+.+.|+ +.+.+...
T Consensus 39 ~~~~~~~~l~~~l~~~i~~~~d~i~i~~l 67 (78)
T PF09827_consen 39 LTNAELRKLRRELEKLIDPDEDSIRIYPL 67 (78)
T ss_dssp E-HHHHHHHHHHHHHHSCTTTCEEEEEEE
T ss_pred cCHHHHHHHHHHHHhhCCCCCCEEEEEEe
Confidence 35677889999999999998 89888875
No 260
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.71 E-value=38 Score=19.44 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.2
Q ss_pred CceecCHHHHHHHHHhCCCCceEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~ 90 (104)
+|.++...++++++++.|++....
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEE
Confidence 787888999999999999987766
No 261
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=35.68 E-value=74 Score=17.00 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=20.9
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.+.+.++|.++|++ -.+.|.++|-....
T Consensus 4 g~isr~~Ae~~L~~----~~~~G~FLvR~s~~ 31 (77)
T PF00017_consen 4 GFISRQEAERLLMQ----GKPDGTFLVRPSSS 31 (77)
T ss_dssp ESSHHHHHHHHHHT----TSSTTEEEEEEESS
T ss_pred CCCCHHHHHHHHHh----cCCCCeEEEEeccc
Confidence 45567788899986 56788888888754
No 262
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.57 E-value=69 Score=21.98 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=20.7
Q ss_pred CCceecCHHHHHHHHHhCCCCceEE
Q 043826 66 PDGKERTRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 66 ~~g~~rt~~e~~~ll~~aGf~~~~~ 90 (104)
.+|..++.+++.+++++.|..-+-+
T Consensus 201 asGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 201 ALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 3788999999999998888776644
No 263
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.51 E-value=22 Score=15.55 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=8.8
Q ss_pred CCCCEEEEEee
Q 043826 29 PEDGKVIVVEL 39 (104)
Q Consensus 29 ~pgg~l~i~d~ 39 (104)
.++|.++|.|.
T Consensus 10 ~~~g~i~VaD~ 20 (28)
T PF01436_consen 10 DSDGNIYVADS 20 (28)
T ss_dssp ETTSEEEEEEC
T ss_pred eCCCCEEEEEC
Confidence 37899999984
No 264
>PRK09662 GspL-like protein; Provisional
Probab=35.50 E-value=34 Score=24.21 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCceEEEEe
Q 043826 74 HEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 74 ~e~~~ll~~aGf~~~~~~~~ 93 (104)
..|.+||+++|++..++.|-
T Consensus 8 q~wl~~l~~agl~~~~~vPD 27 (286)
T PRK09662 8 RNIAQWLQANGITRATVAPD 27 (286)
T ss_pred HHHHHHHHHcCCcceeecCC
Confidence 57999999999999999874
No 265
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=35.37 E-value=73 Score=23.19 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=28.9
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
|++..+=.-.+|.+...++.++.+.+.||.+++.--.
T Consensus 331 ~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 331 YILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred EEEecchhhcccchHHHHHHHHhhccCCCcEEEEecc
Confidence 5555555445678899999999999999999877554
No 266
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=35.22 E-value=1.1e+02 Score=18.95 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=43.4
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEee-ecCCC-------------CCC-CcccchhhhhhhhhhhcCCCceecCHHH
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDGKVIVVEL-MLPEV-------------PNT-SIESKSNFHFDVLMMIQRPDGKERTRHE 75 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~-~~~~~-------------~~~-~~~~~~~~~~~l~m~~~~~~g~~rt~~e 75 (104)
.++++++..+|.+....|..-|.-++.-. ..... +.. ...-......++.--... |+..-|++|
T Consensus 10 ~L~~~ea~~FL~~~~~~L~~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lgl~~l~~f~W~lal-Gd~~Ls~eE 88 (141)
T PF12419_consen 10 ELTTEEAYDFLTEAAPRLRAAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLGLDQLLDFDWELAL-GDEELSEEE 88 (141)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccChHHHhcceEEEEE-CCEECCHHH
Confidence 36788899999998888876544433332 11100 000 000000122222222233 788999999
Q ss_pred HHHHHHhCCCCceEE
Q 043826 76 FMTLATGAGFSGMSC 90 (104)
Q Consensus 76 ~~~ll~~aGf~~~~~ 90 (104)
+.+++++.. ..+++
T Consensus 89 f~~L~~~~~-~LV~~ 102 (141)
T PF12419_consen 89 FEQLVEQKR-PLVRF 102 (141)
T ss_pred HHHHHHcCC-CeEEE
Confidence 999999765 55554
No 267
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=35.19 E-value=6 Score=27.00 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=9.5
Q ss_pred CCCCEEEEEeeecC
Q 043826 29 PEDGKVIVVELMLP 42 (104)
Q Consensus 29 ~pgg~l~i~d~~~~ 42 (104)
.|||..+|+|...+
T Consensus 87 gP~Gvaiive~lTD 100 (234)
T PF01709_consen 87 GPGGVAIIVECLTD 100 (234)
T ss_dssp ETTTEEEEEEEEES
T ss_pred cCCCcEEEEEEeCC
Confidence 36777777776654
No 268
>PRK05473 hypothetical protein; Provisional
Probab=34.77 E-value=30 Score=20.01 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=18.2
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCE
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDGK 33 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg~ 33 (104)
+.+-+..++.++|+.+++||...|.
T Consensus 12 ~~~~~~~~v~eiL~~Vy~AL~EKGY 36 (86)
T PRK05473 12 FDDEKKKDVREILTTVYDALEEKGY 36 (86)
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCC
Confidence 3344455689999999999976543
No 269
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=34.74 E-value=52 Score=21.50 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
-++++.-+++.|.|||.+++ +.+.|
T Consensus 72 E~~l~~~l~~~lspg~~lfV-eYv~D 96 (192)
T COG4353 72 EVKLYKVLYNFLSPGGKLFV-EYVRD 96 (192)
T ss_pred HHHHHHHHHHhcCCCCceEE-EEEec
Confidence 47888999999999999865 55544
No 270
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=34.61 E-value=56 Score=20.09 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=15.2
Q ss_pred CHHHHHHHHHhCCCCceEEE
Q 043826 72 TRHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~ 91 (104)
+.+.+.+||++.|++...+.
T Consensus 63 ~v~~V~~wL~~~G~~~~~~~ 82 (143)
T PF09286_consen 63 DVAAVKSWLKSHGLTVVEVS 82 (143)
T ss_dssp HHHHHHHHHHHCT-EEEEEE
T ss_pred HHHHHHHHHHHcCCceeEEe
Confidence 45678999999999888744
No 271
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=34.38 E-value=31 Score=21.79 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=21.4
Q ss_pred EEEeccccccCChHH-HHHHHHHHHhhCCCC
Q 043826 2 INCTLTILHDWNDEH-CLKLLKNCYKSIPED 31 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~-~~~iL~~~~~aL~pg 31 (104)
+|=+.+.--+..+++ +.++|+++.+.|+..
T Consensus 77 lyPyAHLSs~La~P~~A~~iL~~le~~L~~~ 107 (138)
T PF08915_consen 77 LYPYAHLSSSLASPDVAVEILKKLEERLKSR 107 (138)
T ss_dssp EEE-GGGSSSB--HHHHHHHHHHHHHHHHHT
T ss_pred EeCcccccCCcCChHHHHHHHHHHHHHHHhC
Confidence 566777777777665 999999999999543
No 272
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=34.28 E-value=42 Score=18.11 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=16.1
Q ss_pred ceecCHHHHHHHHHhCCCCceEE
Q 043826 68 GKERTRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~~~ 90 (104)
|...+.++..++|+..||+....
T Consensus 16 G~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp TS---HHHHHHHHHHTT-EEEE-
T ss_pred CCCCCHHHHHHHHHHCCCEEEEC
Confidence 55678999999999999998763
No 273
>COG1438 ArgR Arginine repressor [Transcription]
Probab=34.27 E-value=37 Score=21.73 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=14.5
Q ss_pred CceecCHHHHHHHHHhCCCCc
Q 043826 67 DGKERTRHEFMTLATGAGFSG 87 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~ 87 (104)
.-+..|++|+.+.|++.||++
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~v 37 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEV 37 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeE
Confidence 344567777777777777773
No 274
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=34.16 E-value=37 Score=24.77 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHhCCCCceEEEEe
Q 043826 71 RTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
-.++|++.+++++||++++-...
T Consensus 241 vnE~evE~~~q~~G~~IVrPEtl 263 (368)
T COG4421 241 VNEEEVERLLQRSGLTIVRPETL 263 (368)
T ss_pred hCHHHHHHHHHhcCcEEEechhc
Confidence 36799999999999999875543
No 275
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=33.79 E-value=46 Score=23.23 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=22.0
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCC-EEEEEeee
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDG-KVIVVELM 40 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg-~l~i~d~~ 40 (104)
..++|-++- ....+.+++.|++.| .+++.-..
T Consensus 107 Aqa~HWFdl---e~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 107 AQAVHWFDL---ERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhhHHhhch---HHHHHHHHHHcCCCCCEEEEEEcc
Confidence 345666655 488899999999755 66665543
No 276
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=33.68 E-value=20 Score=24.51 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d 38 (104)
..+.++.++++|+|||.+++.-
T Consensus 170 t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 170 TREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHhhcCCCcEEEEEc
Confidence 3689999999999999987765
No 277
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.67 E-value=84 Score=22.01 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=21.4
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
+....+..+++++++..+...++....
T Consensus 234 ~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 234 DESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred eCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 556788999999999888887776644
No 278
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=33.40 E-value=63 Score=22.60 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 91 (104)
..-.|.+..+.|++.|.+.|.+----+..... +.....+-. .. ..+...-.+++++|.+.|..++++.
T Consensus 99 ~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~---rv~g~~~~~---~~-~~~~~~I~~FEr~L~~~G~~IiKff 166 (264)
T TIGR03709 99 DHDFLWRIHKALPERGEIGIFNRSHYEDVLVV---RVHGLIPKA---IW-ERRYEDINDFERYLTENGTTILKFF 166 (264)
T ss_pred cCchHHHHHHhCCCCCeEEEEcCccccchhhh---hhcCCCCHH---HH-HHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 56778888888888888888875322111000 000000000 00 1223345678889999998888765
No 279
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=33.25 E-value=20 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeec
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
....|..++.-|.|||.+++-|...
T Consensus 191 T~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 5789999999999999998877544
No 280
>PLN02476 O-methyltransferase
Probab=32.67 E-value=98 Score=21.80 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=21.7
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
|-+.++-...+..+.+.|+|||.+++ |.+.
T Consensus 201 Da~K~~Y~~y~e~~l~lL~~GGvIV~-DNvL 230 (278)
T PLN02476 201 DADKRMYQDYFELLLQLVRVGGVIVM-DNVL 230 (278)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEE-ecCc
Confidence 44445567888888999999998755 5444
No 281
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=32.50 E-value=78 Score=18.40 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=24.9
Q ss_pred cCChHHHHHHHHHHHhhCCC-CCEEEEEeeec
Q 043826 11 DWNDEHCLKLLKNCYKSIPE-DGKVIVVELML 41 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~p-gg~l~i~d~~~ 41 (104)
+.++++..+++.++.+.++. ||.+.-.|...
T Consensus 17 ~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG 48 (97)
T CHL00123 17 DLNEEELLKWIENYKKLLRKRGAKNISVQNRG 48 (97)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 34788899999999999976 78887777654
No 282
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=32.49 E-value=66 Score=16.51 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=15.9
Q ss_pred cCHHHHHHHHHhCCCCceEEE
Q 043826 71 RTRHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~~~~ 91 (104)
.+.++..++|+++||+.....
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~~ 29 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVVE 29 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEEE
Confidence 688999999999999655444
No 283
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=32.46 E-value=77 Score=16.25 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=24.2
Q ss_pred ccCChHHHHHHHHHHHhhCC------CCCEEEEEeeecCCC
Q 043826 10 HDWNDEHCLKLLKNCYKSIP------EDGKVIVVELMLPEV 44 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~------pgg~l~i~d~~~~~~ 44 (104)
..-++++..++.+.+.++|. +....++++.+.+++
T Consensus 10 ~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~~~ 50 (63)
T TIGR00013 10 EGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPKNN 50 (63)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHH
Confidence 35678888888888887764 466666776655544
No 284
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=31.96 E-value=23 Score=16.71 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=12.4
Q ss_pred ecCHHHHHHHHHhCC
Q 043826 70 ERTRHEFMTLATGAG 84 (104)
Q Consensus 70 ~rt~~e~~~ll~~aG 84 (104)
++-...|+.+|-++|
T Consensus 19 ~rv~kAWRNiFvqag 33 (34)
T PF13137_consen 19 YRVDKAWRNIFVQAG 33 (34)
T ss_pred HHHHHHHHHHHHHcc
Confidence 456778999999988
No 285
>PF09572 RE_XamI: XamI restriction endonuclease; InterPro: IPR019072 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the XamI restriction endonuclease which recognises GTCGAC but cleavage site unknown. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=31.78 E-value=49 Score=22.98 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhc-----CCCcee-cCHHHHHHHHHhCCCCc
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ-----RPDGKE-RTRHEFMTLATGAGFSG 87 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~-----~~~g~~-rt~~e~~~ll~~aGf~~ 87 (104)
|++.++|++=+.+-|.|+=...+-+.-.|+ +.+..+......-.+... .-+..+ |-++.+++||++.||+.
T Consensus 64 ~~~l~kI~~iI~~llDp~~FpWl~~~~~Pt---~~Ei~~aA~ivadrL~~avA~piiRnaqErRQe~~i~~~L~~~GYt~ 140 (251)
T PF09572_consen 64 DEELQKICDIIEKLLDPDRFPWLGRGRAPT---EEEIERAATIVADRLCGAVADPIIRNAQERRQEAAIAEWLEARGYTK 140 (251)
T ss_pred HHHHHHHHHHHHHhcCcccccccCCCCCCC---HHHHHHHHHHHHHHHHhhhcchHHHhHHHHHHHHHHHHHHHhcCceE
Confidence 556788888888888887332222221111 111111111111111111 114444 55677899999999997
Q ss_pred eEE
Q 043826 88 MSC 90 (104)
Q Consensus 88 ~~~ 90 (104)
+.-
T Consensus 141 ~~~ 143 (251)
T PF09572_consen 141 VPG 143 (251)
T ss_pred ccc
Confidence 643
No 286
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=31.69 E-value=64 Score=23.94 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
=..++..+.+-|+|||.++.+-+
T Consensus 315 y~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 315 YKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred HHHHHHHHHHHcCCCCEEEEEec
Confidence 46789999999999999998875
No 287
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=31.40 E-value=56 Score=18.99 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=21.0
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
||..+...-..-|+.|.+.+.||-.+++++.
T Consensus 2 Lhtv~~Sp~~~~l~~~l~~~~~~D~iLLieD 32 (95)
T PRK13510 2 LHTLSRSPWLTDFAALLRLLKEGDDLLLLQD 32 (95)
T ss_pred eeeecCCCchhHHHHHHHhcCCCCEEEEehH
Confidence 5555544333477888999999877777754
No 288
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=31.03 E-value=54 Score=20.49 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHhhCCCCC
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDG 32 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg 32 (104)
|..|++..+++..+.++|.+++
T Consensus 110 D~~~edv~kv~~~i~e~l~~~~ 131 (135)
T COG4273 110 DCKDEDVEKVARTIKEALTIKL 131 (135)
T ss_pred CCCHHHHHHHHHHHHHHhhhcc
Confidence 6789999999999999999864
No 289
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.87 E-value=59 Score=16.98 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.6
Q ss_pred ccccCChHHHHHHHHHHHhh
Q 043826 8 ILHDWNDEHCLKLLKNCYKS 27 (104)
Q Consensus 8 vlH~~~d~~~~~iL~~~~~a 27 (104)
+++++++++..++|+.++++
T Consensus 5 l~~g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 5 LFSGFSGEELDKFLDALRKA 24 (58)
T ss_pred EECCCCHHHHHHHHHHHHHc
Confidence 57899999999999988886
No 290
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=30.82 E-value=59 Score=17.47 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=10.4
Q ss_pred HhCCCCceEEEEe
Q 043826 81 TGAGFSGMSCERA 93 (104)
Q Consensus 81 ~~aGf~~~~~~~~ 93 (104)
+++||.+.++.+.
T Consensus 48 ~~aGf~VtRiRP~ 60 (63)
T PHA00457 48 VPAGFVVTRIRPE 60 (63)
T ss_pred hccCcEEEEeccc
Confidence 4799999988764
No 291
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=30.69 E-value=53 Score=24.57 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.6
Q ss_pred CceecCHHHHHHHHHhCCCCce
Q 043826 67 DGKERTRHEFMTLATGAGFSGM 88 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~ 88 (104)
++...++.||.+++++||++-+
T Consensus 50 tae~wDP~eWar~fK~aGAKyv 71 (430)
T COG3669 50 TAENWDPREWARLFKEAGAKYV 71 (430)
T ss_pred CcccCCHHHHHHHHHHcCCcEE
Confidence 6777899999999999999955
No 292
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=30.61 E-value=62 Score=22.54 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhCC-CCCEEEEEeeecCCCCCCCcccchhh-hhhhhhhhcCCCceecCHHH----HHHHHHhCCCCce
Q 043826 15 EHCLKLLKNCYKSIP-EDGKVIVVELMLPEVPNTSIESKSNF-HFDVLMMIQRPDGKERTRHE----FMTLATGAGFSGM 88 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~-pgg~l~i~d~~~~~~~~~~~~~~~~~-~~~l~m~~~~~~g~~rt~~e----~~~ll~~aGf~~~ 88 (104)
+++.+-+.++.++|. |+|-.+++-... ..+ ....+.+. ..+...+.. .-++.++..+ +++++..||.+..
T Consensus 14 ~~ai~hi~ri~RvL~~~~Gh~LLvG~~G-sGr--~sl~rLaa~i~~~~~~~i-~~~~~y~~~~f~~dLk~~~~~ag~~~~ 89 (268)
T PF12780_consen 14 DEAIEHIARISRVLSQPRGHALLVGVGG-SGR--QSLARLAAFICGYEVFQI-EITKGYSIKDFKEDLKKALQKAGIKGK 89 (268)
T ss_dssp HHHHHHHHHHHHHHCSTTEEEEEECTTT-SCH--HHHHHHHHHHTTEEEE-T-TTSTTTHHHHHHHHHHHHHHHHHCS-S
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEecCCC-ccH--HHHHHHHHHHhccceEEE-EeeCCcCHHHHHHHHHHHHHHHhccCC
Confidence 346677788888886 788887665311 111 11122111 111111111 1234456655 4577788999876
Q ss_pred EEEE
Q 043826 89 SCER 92 (104)
Q Consensus 89 ~~~~ 92 (104)
.+.=
T Consensus 90 ~~vf 93 (268)
T PF12780_consen 90 PTVF 93 (268)
T ss_dssp -EEE
T ss_pred CeEE
Confidence 5543
No 293
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=30.60 E-value=1.6e+02 Score=19.23 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=20.5
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEeCC
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERAIG 95 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 95 (104)
.++.++.++|.+||++.| .+.--...++
T Consensus 92 ~~~~~t~e~~~~LL~~yG-PLwv~~~~P~ 119 (166)
T PF12385_consen 92 ANASYTAEGLANLLREYG-PLWVAWEAPG 119 (166)
T ss_pred cccccCHHHHHHHHHHcC-CeEEEecCCC
Confidence 357899999999999999 5443344443
No 294
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=30.41 E-value=52 Score=25.27 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeee
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
...||-++=+.|+|||.++|-|.+
T Consensus 446 ~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 446 MEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred HHHHHHHhHhhcCCCceEEEeccH
Confidence 568899999999999999988753
No 295
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=30.36 E-value=1.6e+02 Score=19.29 Aligned_cols=66 Identities=5% Similarity=-0.070 Sum_probs=32.6
Q ss_pred HhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEE
Q 043826 25 YKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 25 ~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
...+.||-+++|+|-++....+.....+............. ---.|+. ..++-+++.|.+...+..
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~-vlvdr~~-g~~~~l~~~gi~~~sl~~ 181 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVI-TVVDREE-GAEENLKEADVELVPLVS 181 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEE-EEEECCc-ChHHHHHHcCCcEEEEEE
Confidence 35678899999999988655321110000000000000000 0022443 566777888877666554
No 296
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=29.90 E-value=1.8e+02 Score=20.87 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=41.8
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhh-------hhhhhhhhcCCCceecCHHHHHHH--
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNF-------HFDVLMMIQRPDGKERTRHEFMTL-- 79 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~-------~~~l~m~~~~~~g~~rt~~e~~~l-- 79 (104)
+.-|+| +...-++++.+++...|..++++..-......+....... ............-++-|.+|+.++
T Consensus 71 ~~i~~d-~~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~ 149 (341)
T PF00724_consen 71 PGIWDD-EQIPGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIE 149 (341)
T ss_dssp EBSSSH-HHHHHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHH
T ss_pred chhchh-hHHHHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHH
Confidence 333554 4678889999999987777777754322111100000000 000000000001255677776554
Q ss_pred --------HHhCCCCceEEEEeC
Q 043826 80 --------ATGAGFSGMSCERAI 94 (104)
Q Consensus 80 --------l~~aGf~~~~~~~~~ 94 (104)
..+|||..++++..-
T Consensus 150 ~f~~AA~~A~~AGfDGVEIH~ah 172 (341)
T PF00724_consen 150 DFAQAARRAKEAGFDGVEIHAAH 172 (341)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHHHHHHHhccCeEeecccc
Confidence 567999999998753
No 297
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=29.75 E-value=57 Score=23.55 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=24.5
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEeCCCeEEEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVME 101 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie 101 (104)
+-..+|..++.++|++.||..+. ...+...++|
T Consensus 92 hLFiyTKp~~~~lFk~~GF~~i~--~~~~~ivlmE 124 (352)
T COG3053 92 HLFIYTKPEYAALFKQCGFSEIA--SAENVIVLME 124 (352)
T ss_pred eEEEEechhHHHHHHhCCceEee--ccCceEEEee
Confidence 45678999999999999998763 3344555555
No 298
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=29.67 E-value=66 Score=21.50 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=35.3
Q ss_pred ccCCh---HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826 10 HDWND---EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86 (104)
Q Consensus 10 H~~~d---~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~ 86 (104)
.||.. .....+.+++.+.++||+.++++|.. + .. . ....++...+++-||+
T Consensus 163 ~Dw~~~~~~~~~~~~~~v~~~~~~g~IiLlHd~~----~--~t-------~-------------~aL~~ii~~lk~~Gy~ 216 (224)
T TIGR02884 163 KDWKVDEQPGWQYAYKQIMKKIHPGAILLLHAVS----K--DN-------A-------------EALDKIIKDLKEQGYT 216 (224)
T ss_pred cccCCCCCCCHHHHHHHHHhcCCCCcEEEEECCC----C--CH-------H-------------HHHHHHHHHHHHCCCE
Confidence 47742 23467788888888999888888731 0 00 0 0134667777888888
Q ss_pred ceEEE
Q 043826 87 GMSCE 91 (104)
Q Consensus 87 ~~~~~ 91 (104)
.+++.
T Consensus 217 fvtl~ 221 (224)
T TIGR02884 217 FKSLD 221 (224)
T ss_pred EEEhH
Confidence 76653
No 299
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=29.55 E-value=1.5e+02 Score=20.30 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=33.7
Q ss_pred HHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCce--ecCHHHHHHHHHhCCCCceEE
Q 043826 19 KLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGK--ERTRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~--~rt~~e~~~ll~~aGf~~~~~ 90 (104)
.+++.+.+.++++.+++-..++......++..+. ...+.-.....+++.. ....+.+.++++..|.+.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~-~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 84 PIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAAD-ADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-T-TTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHhcCcccceeecCCCCCCccccchhhc-ccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 4445555555556777777777655444432211 1122211122221211 122356788899999766544
No 300
>PRK03094 hypothetical protein; Provisional
Probab=29.43 E-value=59 Score=18.53 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=20.5
Q ss_pred ceecCHHHHHHHHHhCCCCceEEEE
Q 043826 68 GKERTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
+-+.++..+++-|++-||+++....
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCc
Confidence 3456788999999999999987754
No 301
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=29.33 E-value=89 Score=21.59 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
+-..++|..++++|++++.+.|.+
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEEec
Confidence 347899999999997677776644
No 302
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=29.32 E-value=41 Score=19.13 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHhhCCCCCE
Q 043826 13 NDEHCLKLLKNCYKSIPEDGK 33 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pgg~ 33 (104)
...+..++|+.+++||+..|.
T Consensus 13 ~~~~~~~iL~~Vy~AL~EKGY 33 (79)
T PF06135_consen 13 KEKEIREILKQVYAALEEKGY 33 (79)
T ss_pred chhhHHHHHHHHHHHHHHcCC
Confidence 345689999999999986543
No 303
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=29.29 E-value=1.1e+02 Score=17.03 Aligned_cols=23 Identities=4% Similarity=-0.084 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCCceEEEEeCC
Q 043826 73 RHEFMTLATGAGFSGMSCERAIG 95 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~ 95 (104)
..++..|.++.|.+.......++
T Consensus 49 ~~di~~~~~~~G~~~~~~~~~~g 71 (81)
T PRK00299 49 TRDIPSFCRFMDHELLAQETEQL 71 (81)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 45777888999999887655433
No 304
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=29.18 E-value=1.2e+02 Score=20.65 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=22.4
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPE 43 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~ 43 (104)
|-.-.+-...+..+.+.|+|||.+++ |.+.-.
T Consensus 139 DadK~~yp~~le~~~~lLr~GGliv~-DNvl~~ 170 (219)
T COG4122 139 DADKADYPEYLERALPLLRPGGLIVA-DNVLFG 170 (219)
T ss_pred eCChhhCHHHHHHHHHHhCCCcEEEE-eecccC
Confidence 44444567889999999999987754 555433
No 305
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=29.09 E-value=45 Score=18.85 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=16.4
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
.|...|.+++.+.|+..|++-+.-..
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~~~~ 28 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVSNPD 28 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-SS--
T ss_pred CCcccCHHHHHHHHHHcCCCcCCCCC
Confidence 57778999999999999998875433
No 306
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=29.07 E-value=58 Score=23.91 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.3
Q ss_pred ceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 68 GKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
+..++.+|+.++++++||..+..-..
T Consensus 334 ~~~~~~eel~~~i~~aG~~p~~Rdt~ 359 (370)
T COG1060 334 GDWRSVEELAALIKEAGRIPVERDTL 359 (370)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeeccc
Confidence 34689999999999999998865544
No 307
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=28.98 E-value=1.1e+02 Score=18.60 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHHhhCC---C-CCEEEEEee
Q 043826 13 NDEHCLKLLKNCYKSIP---E-DGKVIVVEL 39 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~---p-gg~l~i~d~ 39 (104)
+|++..+++..+.++++ + +|++++++-
T Consensus 66 ~de~ve~vie~I~~~a~tG~~GDGkIFV~~V 96 (112)
T COG0347 66 SDEDVDEVIEAIKKAARTGKIGDGKIFVSPV 96 (112)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCeEEEEEEh
Confidence 57778888888888887 3 499988873
No 308
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.98 E-value=49 Score=16.73 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCCc
Q 043826 73 RHEFMTLATGAGFSG 87 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~ 87 (104)
.++..+.|+++||+.
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 778999999999965
No 309
>PRK15450 signal transduction protein PmrD; Provisional
Probab=28.97 E-value=43 Score=19.15 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.2
Q ss_pred CceecCHHHHHHHHHhCC
Q 043826 67 DGKERTRHEFMTLATGAG 84 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aG 84 (104)
+.+.|+.+||.++...+|
T Consensus 68 ~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 68 SASCYSPDEWERQCKKAG 85 (85)
T ss_pred eccccCHHHHHHHhccCC
Confidence 678899999999987665
No 310
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=28.82 E-value=1.7e+02 Score=21.55 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 043826 13 NDEHCLKLLKNCYKSIPEDGKVIVVELMLPE 43 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~ 43 (104)
+|..-.++++++-++...+.+++.+|.-..+
T Consensus 308 SDRgFLtLiQ~LG~~~~~~N~vV~VDSS~GE 338 (381)
T PF09506_consen 308 SDRGFLTLIQELGQEFGTGNRVVFVDSSHGE 338 (381)
T ss_pred CcchHHHHHHHHHHHhCCCCeEEEEeCCCCe
Confidence 5666789999999999999999999976443
No 311
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=28.78 E-value=82 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.3
Q ss_pred HHHHHHhhCCCCCEEEEEeeec
Q 043826 20 LLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 20 iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
-+....++|++||+++++-...
T Consensus 241 ~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 241 TLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hHHHHHHHHhcCCEEEEECCCC
Confidence 3456667899999999998763
No 312
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=28.50 E-value=54 Score=15.66 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=13.8
Q ss_pred cccccCChHHHHHHHHHH
Q 043826 7 TILHDWNDEHCLKLLKNC 24 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~ 24 (104)
.|+++.+.+++..|+.-+
T Consensus 17 ~Vfd~v~~~Ka~~im~lA 34 (36)
T PF06200_consen 17 CVFDDVPPDKAQEIMLLA 34 (36)
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 467788989888888643
No 313
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=28.41 E-value=91 Score=19.99 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 94 (104)
...++.+.+.|+++|.+.|.=.-.+ | + ..+ ++.++.+++||...+..+..
T Consensus 105 ~~Ff~Sa~~~L~~~G~IhVTl~~~~-----p-y----~~W-----------------~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 105 RGFFKSASQLLKPDGEIHVTLKDGQ-----P-Y----DSW-----------------NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCC-----C-C----ccc-----------------cHHHHHHhcCCEEEEEecCC
Confidence 4556777788889999977653221 1 0 011 33466677888888777653
No 314
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.38 E-value=56 Score=20.71 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.9
Q ss_pred ceecCHHHHHHHHHhCCCCce
Q 043826 68 GKERTRHEFMTLATGAGFSGM 88 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~ 88 (104)
++.-|-.+-+.+|+++||+.+
T Consensus 131 ~k~iSm~~sek~Lk~~Gfke~ 151 (152)
T COG4808 131 SKGISMKQSEKLLKAAGFKEV 151 (152)
T ss_pred cccccHHHHHHHHHhcCcccC
Confidence 466788999999999999865
No 315
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=28.38 E-value=72 Score=16.91 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=12.4
Q ss_pred cCHHHHHHHHHhCCCCc
Q 043826 71 RTRHEFMTLATGAGFSG 87 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~ 87 (104)
.+.+++.++.+++||..
T Consensus 25 ~~~e~~~~lA~~~Gf~f 41 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEF 41 (64)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 35777788888888764
No 316
>PRK05066 arginine repressor; Provisional
Probab=28.32 E-value=49 Score=21.20 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.4
Q ss_pred CceecCHHHHHHHHHhCCCC
Q 043826 67 DGKERTRHEFMTLATGAGFS 86 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~ 86 (104)
+....|.+|+.+.|++.||.
T Consensus 20 ~~~I~tQeeL~~~L~~~Gi~ 39 (156)
T PRK05066 20 EEKFGSQGEIVTALQEQGFD 39 (156)
T ss_pred hCCCCCHHHHHHHHHHCCCC
Confidence 55567888999988888988
No 317
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=28.30 E-value=85 Score=17.29 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.9
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
-+.+.+++.++|+. .+.|.++|-+.-
T Consensus 5 g~i~r~~Ae~~L~~-----~~~G~FLiR~s~ 30 (94)
T cd00173 5 GPISREEAEELLKK-----KPDGTFLVRDSE 30 (94)
T ss_pred cCCCHHHHHHHHhc-----CCCceEEEEecC
Confidence 35677888999987 566777777754
No 318
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.29 E-value=71 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.472 Sum_probs=15.4
Q ss_pred HHHHHHHhhCCCCCEEEEEe
Q 043826 19 KLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d 38 (104)
.+...+.+.|+|||++++..
T Consensus 161 ~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 161 EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred HhHHHHHHhcCCCCEEEEEe
Confidence 44556778999999998854
No 319
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
Probab=28.29 E-value=71 Score=22.15 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.2
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 94 (104)
.|+.| |++.|++..||++.+.+++.
T Consensus 190 EGrnr---QVRRm~~a~G~~V~~L~R~~ 214 (248)
T COG1187 190 EGRNR---QVRRMFEAVGLEVLRLKRIR 214 (248)
T ss_pred CCcCH---HHHHHHHHcCCEEeEEEEEE
Confidence 67654 79999999999999988864
No 320
>PHA01782 hypothetical protein
Probab=28.27 E-value=19 Score=23.36 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=17.4
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCE
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDGK 33 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg~ 33 (104)
++|-...--+.+.++.+++|+.|+|
T Consensus 44 l~HvdeHGDVt~a~kL~~aMPKGsR 68 (177)
T PHA01782 44 LNHVDEHGDVTVAKKLYEAMPKGSR 68 (177)
T ss_pred HHHHHHcccHHHHHHHHHHccccch
Confidence 3333333338899999999999865
No 321
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=28.25 E-value=1.8e+02 Score=21.55 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 13 NDEHCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
+|..-.++++++-+....+.+++.+|.-..
T Consensus 313 SDRgFL~LiQ~LG~~~~~~N~vV~VDSS~G 342 (389)
T TIGR02399 313 SDRSFLELIQLLGQEFNSNNKVVFVDSSSG 342 (389)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 566678999999999999999999997543
No 322
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=28.05 E-value=1.6e+02 Score=19.59 Aligned_cols=31 Identities=10% Similarity=0.246 Sum_probs=26.3
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
-++|-....+||+++..-|++||.++-+..-
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 3667778899999999999999999887754
No 323
>PRK09213 pur operon repressor; Provisional
Probab=28.05 E-value=59 Score=22.82 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=15.8
Q ss_pred hhCCCCCEEEEEeeecCCC
Q 043826 26 KSIPEDGKVIVVELMLPEV 44 (104)
Q Consensus 26 ~aL~pgg~l~i~d~~~~~~ 44 (104)
+++++|.+++|+|-++...
T Consensus 191 ~~l~~G~rVLIVDDv~~TG 209 (271)
T PRK09213 191 RSLKEGSRVLIVDDFMKAG 209 (271)
T ss_pred hhcCCcCEEEEEeeecccC
Confidence 5788999999999888644
No 324
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=27.80 E-value=31 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
=.++++++.+.|+|||.|+.+-.
T Consensus 217 y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 217 YKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHHHHHhcCCCCEEEEEcC
Confidence 36789999999999999987764
No 325
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=27.78 E-value=55 Score=17.14 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHhCCCCceE
Q 043826 71 RTRHEFMTLATGAGFSGMS 89 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~~ 89 (104)
--.+||..++..+|.+..+
T Consensus 25 glp~ew~~~l~~~~it~~~ 43 (59)
T PF00786_consen 25 GLPPEWEKLLKSSGITEEE 43 (59)
T ss_dssp S--HHHHHHHHSCTTSHHH
T ss_pred cCCHHHHhhccccCCCHHH
Confidence 4578999999999987543
No 326
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=27.47 E-value=68 Score=18.15 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=11.9
Q ss_pred hhhhhcCCCceecCHHHHHHHHH
Q 043826 59 VLMMIQRPDGKERTRHEFMTLAT 81 (104)
Q Consensus 59 l~m~~~~~~g~~rt~~e~~~ll~ 81 (104)
++||. ..|+.+|.+++.+++.
T Consensus 8 L~mml--~~~~~~t~~~L~~~i~ 28 (77)
T TIGR03853 8 LNLML--ASGEPYTRESLKAAIE 28 (77)
T ss_pred HHHHH--HcCCCcCHHHHHHHHH
Confidence 34453 2566667777666554
No 327
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.46 E-value=65 Score=16.76 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.2
Q ss_pred CHHHHHHHHHhCCCCc
Q 043826 72 TRHEFMTLATGAGFSG 87 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~ 87 (104)
..+...+.|+++||++
T Consensus 49 ~~~~~~~~L~~~G~~v 64 (66)
T cd04908 49 DPDKAKEALKEAGFAV 64 (66)
T ss_pred CHHHHHHHHHHCCCEE
Confidence 3568889999999985
No 328
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.42 E-value=65 Score=16.74 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.9
Q ss_pred CHHHHHHHHHhCCCCc
Q 043826 72 TRHEFMTLATGAGFSG 87 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~ 87 (104)
..++..+.|+++||++
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 3568899999999964
No 329
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=27.40 E-value=81 Score=23.29 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEee
Q 043826 18 LKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
..+++.+.+.|+|||.++.+-+
T Consensus 319 ~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 319 KDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHcCCCeEEEEEeC
Confidence 4566778899999999988763
No 330
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=27.28 E-value=1.7e+02 Score=20.29 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=17.3
Q ss_pred ecCHHHHHHHHHhCCCCceEEE
Q 043826 70 ERTRHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 70 ~rt~~e~~~ll~~aGf~~~~~~ 91 (104)
..+++++...+-+||-.++...
T Consensus 146 ~~~ed~l~e~~ieagaeDv~~~ 167 (241)
T COG0217 146 EIDEDELLEAAIEAGAEDVEED 167 (241)
T ss_pred CCCHHHHHHHHHHCCchhhhcC
Confidence 3688888888888998877655
No 331
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=27.22 E-value=1.6e+02 Score=20.66 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=18.9
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 043826 19 KLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
..+..+.+.|++||+++++....
T Consensus 250 ~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 250 PLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred HHHHHHHHHccCCcEEEEEecCC
Confidence 46788889999999999887654
No 332
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=27.08 E-value=1.3e+02 Score=20.55 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.1
Q ss_pred ecCHHHH-HHHHHhCCCCceEEEEeCC
Q 043826 70 ERTRHEF-MTLATGAGFSGMSCERAIG 95 (104)
Q Consensus 70 ~rt~~e~-~~ll~~aGf~~~~~~~~~~ 95 (104)
.-|-+|. +.+++..|..++++.++++
T Consensus 36 g~TGae~Ar~iL~~~gl~~V~Ve~~~G 62 (222)
T PF04298_consen 36 GMTGAEVARHILDRNGLSDVRVERVPG 62 (222)
T ss_pred CCCHHHHHHHHHHHCCCCCeeEEEeCC
Confidence 3466666 7899999999999999864
No 333
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=27.01 E-value=83 Score=21.77 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.2
Q ss_pred cCHHHHHHHHHhCCCCceEEEEeCCC
Q 043826 71 RTRHEFMTLATGAGFSGMSCERAIGN 96 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~~~~~~~~~ 96 (104)
-..+|++++.+++|.+++++..+.++
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypF 74 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPF 74 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccc
Confidence 46789999999999999999887643
No 334
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=27.00 E-value=48 Score=24.58 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.0
Q ss_pred hhhhcCCC-ceecCHHHHHHHHHhCCCCc
Q 043826 60 LMMIQRPD-GKERTRHEFMTLATGAGFSG 87 (104)
Q Consensus 60 ~m~~~~~~-g~~rt~~e~~~ll~~aGf~~ 87 (104)
+||-.++| |.+|+.++|.+.|+.-+|..
T Consensus 291 HMMPdLPNVg~eRDieqF~E~FenP~FR~ 319 (554)
T KOG2535|consen 291 HMMPDLPNVGMERDIEQFKEYFENPAFRP 319 (554)
T ss_pred hhCCCCCCCchhhhHHHHHHHhcCcCcCC
Confidence 56666667 78899999999999888874
No 335
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=26.99 E-value=57 Score=16.84 Aligned_cols=17 Identities=6% Similarity=0.097 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHhCCCCc
Q 043826 71 RTRHEFMTLATGAGFSG 87 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~ 87 (104)
++.+++.+|+++.|+..
T Consensus 3 W~~~~V~~WL~~~~l~~ 19 (64)
T PF00536_consen 3 WSVEDVSEWLKSLGLEQ 19 (64)
T ss_dssp TSHHHHHHHHHHTTGGG
T ss_pred CCHHHHHHHHHHCCCHH
Confidence 57788888888888754
No 336
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.95 E-value=62 Score=16.51 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=32.3
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS 86 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~ 86 (104)
+...+.|.+-+++....+ || |.+..++-.... . ...+ +...-+.+++.+.++++||+
T Consensus 6 ~m~C~~C~~~v~~~l~~~-~G----V~~v~vd~~~~~--v---~v~~---------~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 6 GMTCEGCAKKVEKALSKL-PG----VKSVKVDLETKT--V---TVTY---------DPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp STTSHHHHHHHHHHHHTS-TT----EEEEEEETTTTE--E---EEEE---------STTTSCHHHHHHHHHHTTSE
T ss_pred CcccHHHHHHHHHHHhcC-CC----CcEEEEECCCCE--E---EEEE---------ecCCCCHHHHHHHHHHhCcC
Confidence 566677888888888877 45 222222211110 0 0111 11124678999999999984
No 337
>COG3327 PaaX Phenylacetic acid-responsive transcriptional repressor [Transcription]
Probab=26.75 E-value=62 Score=22.81 Aligned_cols=31 Identities=13% Similarity=0.457 Sum_probs=24.6
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
-||+.+.+..+..+++++|.|-....+...+
T Consensus 235 a~W~G~~Ar~Lf~~ly~~lap~A~~f~~~~~ 265 (291)
T COG3327 235 ADWPGDTARALFADLYRALAPRADAFFLLVV 265 (291)
T ss_pred CCCCChHHHHHHHHHHHHhChhHHHHHHHhh
Confidence 4899999999999999999997554444433
No 338
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=26.71 E-value=1e+02 Score=15.88 Aligned_cols=36 Identities=8% Similarity=0.162 Sum_probs=25.4
Q ss_pred cccccCChHHHHHHHHHHHhhCC------CCCEEEEEeeecC
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIP------EDGKVIVVELMLP 42 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~------pgg~l~i~d~~~~ 42 (104)
.+..+.++++.+++.+.+.+++. +...-++++.+.+
T Consensus 7 ~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~ 48 (60)
T PRK02289 7 DLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPE 48 (60)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCh
Confidence 34557889999999999998885 3455555555543
No 339
>PF03434 DUF276: DUF276 ; InterPro: IPR005096 This family is specific to Borrelia burgdorferi (Lyme disease spirochete). The protein is encoded on extrachromosomal DNA and is of unknown function.
Probab=26.47 E-value=67 Score=22.41 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhhCCCCCEE
Q 043826 14 DEHCLKLLKNCYKSIPEDGKV 34 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l 34 (104)
|.+....|...++.|+|||..
T Consensus 54 e~eii~~ln~lFsk~K~~g~Y 74 (291)
T PF03434_consen 54 EEEIINELNLLFSKMKPGGTY 74 (291)
T ss_pred HHHHHHHHHHHHHhcCCCchH
Confidence 567788899999999999874
No 340
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=26.29 E-value=60 Score=16.45 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHhCCCCceEEE
Q 043826 77 MTLATGAGFSGMSCE 91 (104)
Q Consensus 77 ~~ll~~aGf~~~~~~ 91 (104)
..+|+..||+++.+-
T Consensus 24 ~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 24 HRHLKALGYKVISIP 38 (58)
T ss_pred HHHHHHCCCEEEEec
Confidence 678889999988764
No 341
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=26.24 E-value=1e+02 Score=17.73 Aligned_cols=26 Identities=12% Similarity=0.016 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
.-....|..+..+++-||.+++.=+-
T Consensus 22 g~~pnal~a~~gtv~gGGllill~p~ 47 (92)
T PF08351_consen 22 GFDPNALAALAGTVRGGGLLILLLPP 47 (92)
T ss_dssp ---HHHHHHHHTTB-TT-EEEEEES-
T ss_pred CCCHHHHHHHhcceecCeEEEEEcCC
Confidence 33457788899999999999887543
No 342
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=25.98 E-value=74 Score=17.08 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=10.9
Q ss_pred cCHHHHHHHHHhCC
Q 043826 71 RTRHEFMTLATGAG 84 (104)
Q Consensus 71 rt~~e~~~ll~~aG 84 (104)
++.+||.+++++.|
T Consensus 15 k~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 15 KTLDEWLALAREGG 28 (61)
T ss_pred cCHHHHHHHHHHhC
Confidence 67888888888774
No 343
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=25.72 E-value=45 Score=24.34 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=17.0
Q ss_pred CHHHHHHHHHhCCCCceEEE
Q 043826 72 TRHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~ 91 (104)
+.+.|+..++.|||+.+.+.
T Consensus 311 ~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 311 RLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred chhHHHHHHHhcCCeecCCC
Confidence 56889999999999987654
No 344
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=25.58 E-value=1.4e+02 Score=18.61 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=13.9
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
|.||+++...-+=++.+.++++..+ ++..
T Consensus 103 ~~~P~~~~iD~fi~~v~~~p~~~~l-~fhC 131 (149)
T PF14566_consen 103 HQAPDPEDIDAFINFVKSLPKDTWL-HFHC 131 (149)
T ss_dssp TS---HHHHHHHHHHHHTS-TT-EE-EEE-
T ss_pred cCCCCHHHHHHHHHHHHhCCCCCeE-EEEC
Confidence 6788777666666666667555554 4443
No 345
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.47 E-value=67 Score=19.66 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
.+...+.-+.+.+++..||+++++-.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~ 43 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGN 43 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34466777778888889999999974
No 346
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=25.32 E-value=74 Score=17.74 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHhCCCCceEEEEe
Q 043826 71 RTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
--.+++..+|+..||+..++-..
T Consensus 16 GlA~~~a~~L~~~Gf~v~~~~n~ 38 (90)
T PF13399_consen 16 GLAARVADALRNRGFTVVEVGNA 38 (90)
T ss_pred CHHHHHHHHHHHCCCceeecCCC
Confidence 34578999999999999876544
No 347
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=25.08 E-value=57 Score=16.05 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCCceE
Q 043826 75 EFMTLATGAGFSGMS 89 (104)
Q Consensus 75 e~~~ll~~aGf~~~~ 89 (104)
++.+-+..|||..+.
T Consensus 2 e~a~Rl~~AgF~~i~ 16 (41)
T PF11590_consen 2 ETAERLRSAGFATIG 16 (41)
T ss_dssp HHHHHHHHTT-EEEC
T ss_pred hHHHHHHHHhHHHhc
Confidence 677888899997653
No 348
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=24.98 E-value=1.1e+02 Score=17.43 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.8
Q ss_pred CceecCHHHHHHHHHhC
Q 043826 67 DGKERTRHEFMTLATGA 83 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~a 83 (104)
..+.|.+.|+++||++-
T Consensus 55 t~kqRrE~EV~~LLeKi 71 (80)
T PF08149_consen 55 TKKQRREREVRSLLEKI 71 (80)
T ss_pred chhHHhHHHHHHHHHhC
Confidence 57889999999999864
No 349
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=24.84 E-value=1.8e+02 Score=18.07 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 13 NDEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
+.++-.++-+++.+.|+||..+++.-.+
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G~l 31 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKGDL 31 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 3455678888888889888777666543
No 350
>smart00463 SMR Small MutS-related domain.
Probab=24.78 E-value=82 Score=17.16 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=19.1
Q ss_pred cccCChHHHHHHHHHHHhhCCCCC
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDG 32 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg 32 (104)
||.++-++|...|....+.+...+
T Consensus 6 LHG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 6 LHGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcC
Confidence 799999999988888887766543
No 351
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=24.59 E-value=1e+02 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=26.9
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826 7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~ 42 (104)
...|.-.++.-..++..+.+++.+||++++--+...
T Consensus 192 ~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~g 227 (427)
T COG1236 192 DRLHPNRDEVERRFIESVKAALERGGTVLIPAFALG 227 (427)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEeccccc
Confidence 345555555556688899999999999998877654
No 352
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=24.58 E-value=74 Score=22.59 Aligned_cols=74 Identities=7% Similarity=-0.031 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecC-------CCCCCCcc----cch---hhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLP-------EVPNTSIE----SKS---NFHFDVLMMIQRPDGKERTRHEFMTLATG 82 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~-------~~~~~~~~----~~~---~~~~~l~m~~~~~~g~~rt~~e~~~ll~~ 82 (104)
..+.+..+.++++.||||+-+-.-.. ...-||.+ ... ..-=.-.+... .+|-+-+.+.-++-+++
T Consensus 46 Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~a-vEGaED~~~~g~~dl~~ 124 (298)
T COG2103 46 IAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKA-VEGAEDDEELGEADLKN 124 (298)
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHHh-hcCccccHHHHHHHHHH
Confidence 45667778889999999876553211 00001100 000 00000111111 36777777788888888
Q ss_pred CCCCceEEE
Q 043826 83 AGFSGMSCE 91 (104)
Q Consensus 83 aGf~~~~~~ 91 (104)
.|++...+.
T Consensus 125 ~~lt~~Dvv 133 (298)
T COG2103 125 IGLTAKDVV 133 (298)
T ss_pred cCCCcCCEE
Confidence 998866543
No 353
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=24.48 E-value=1e+02 Score=16.82 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCCceEEE
Q 043826 74 HEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 74 ~e~~~ll~~aGf~~~~~~ 91 (104)
..+++-+..+||+.++++
T Consensus 6 ~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 6 RKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHcCCCcceee
Confidence 467888999999999876
No 354
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=24.46 E-value=95 Score=24.71 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~ 37 (104)
-..+++.+.+.|+|||.+++.
T Consensus 635 y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 635 HVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 467889999999999988665
No 355
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=24.46 E-value=1.3e+02 Score=20.48 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=22.5
Q ss_pred ceecCHHHH-HHHHHhCCCCceEEEEeCCC
Q 043826 68 GKERTRHEF-MTLATGAGFSGMSCERAIGN 96 (104)
Q Consensus 68 g~~rt~~e~-~~ll~~aGf~~~~~~~~~~~ 96 (104)
...+|..|. +.++.+.|+.++.+...++.
T Consensus 37 s~g~TGaevAr~iLd~nGl~dV~Ve~v~G~ 66 (226)
T COG2738 37 SSGLTGAEVARMILDENGLYDVPVEEVPGT 66 (226)
T ss_pred cCCCcHHHHHHHHHhhcCCccceeeeecCC
Confidence 344677776 77888999999999988653
No 356
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=24.46 E-value=1.6e+02 Score=19.64 Aligned_cols=81 Identities=14% Similarity=0.035 Sum_probs=49.2
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC----------CCCCCCcccch-hhhhhhhhhhcCCCceec
Q 043826 3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP----------EVPNTSIESKS-NFHFDVLMMIQRPDGKER 71 (104)
Q Consensus 3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~----------~~~~~~~~~~~-~~~~~l~m~~~~~~g~~r 71 (104)
.+++..|....++ .++|+++.+. |.+.+|.=+... ..+ .|..... ..++| ++|=+.-
T Consensus 79 VIlsqtLQ~~~~P--~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~Gr-mPvt~~lPy~WYd------TPNih~~ 146 (193)
T PF07021_consen 79 VILSQTLQAVRRP--DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGR-MPVTKALPYEWYD------TPNIHLC 146 (193)
T ss_pred EehHhHHHhHhHH--HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCC-CCCCCCCCCcccC------CCCcccc
Confidence 3567778777664 6778887665 555555432211 000 1100000 01232 4566677
Q ss_pred CHHHHHHHHHhCCCCceEEEEeCC
Q 043826 72 TRHEFMTLATGAGFSGMSCERAIG 95 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~~~ 95 (104)
|..+++++.++.|+++.+...+.+
T Consensus 147 Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 147 TIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred cHHHHHHHHHHCCCEEEEEEEEcC
Confidence 999999999999999998887754
No 357
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=24.45 E-value=69 Score=18.38 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=18.8
Q ss_pred HHHHHHHHhhCCCCCEEEEEee
Q 043826 18 LKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
++++.+-.+.|.+|+.+++.+-
T Consensus 38 ~~v~~~y~~~l~~GavLlLk~V 59 (86)
T PF15072_consen 38 RKVLEEYGDELSPGAVLLLKDV 59 (86)
T ss_pred HHHHhhcCCccccCEEEEEeee
Confidence 5778887789999999999985
No 358
>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.
Probab=24.45 E-value=1e+02 Score=19.76 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCCceEEEEeC
Q 043826 74 HEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 74 ~e~~~ll~~aGf~~~~~~~~~ 94 (104)
.+++.+|+..|+++.+..++.
T Consensus 120 ~qIRrm~~~~G~~V~~L~Ri~ 140 (164)
T cd02554 120 RQIRRMCEALGYRVTDLKRVR 140 (164)
T ss_pred HHHHHHHHHcCCEEEEEEEEE
Confidence 489999999999999888763
No 359
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=24.34 E-value=54 Score=21.39 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhhCCCCCEE
Q 043826 14 DEHCLKLLKNCYKSIPEDGKV 34 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l 34 (104)
++....+++++.+++.|+|.+
T Consensus 223 ~~~~~~~~~~iK~~~DP~~il 243 (248)
T PF02913_consen 223 GPAALRLMRAIKQAFDPNGIL 243 (248)
T ss_dssp HHHHHHHHHHHHHHH-TTS-B
T ss_pred chHHHHHHHHhhhccCCccCC
Confidence 344688999999999998764
No 360
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=24.31 E-value=59 Score=21.32 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=15.7
Q ss_pred HHhhCCCCCEEEEEeeecCC
Q 043826 24 CYKSIPEDGKVIVVELMLPE 43 (104)
Q Consensus 24 ~~~aL~pgg~l~i~d~~~~~ 43 (104)
-..|++||.+++|+|.++-.
T Consensus 115 q~~Ai~~g~rvvvVDDllAT 134 (183)
T KOG1712|consen 115 QKGAIKPGQRVVVVDDLLAT 134 (183)
T ss_pred eccccCCCCeEEEEechhhc
Confidence 34688999999999977643
No 361
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=24.30 E-value=78 Score=15.85 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=8.3
Q ss_pred HHHHHHHHhCCCC
Q 043826 74 HEFMTLATGAGFS 86 (104)
Q Consensus 74 ~e~~~ll~~aGf~ 86 (104)
++|...|.+.|++
T Consensus 17 ~~y~~~f~~~~i~ 29 (63)
T cd00166 17 GQYADNFRENGID 29 (63)
T ss_pred HHHHHHHHHcCCC
Confidence 5666666666654
No 362
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=24.09 E-value=81 Score=20.62 Aligned_cols=67 Identities=15% Similarity=-0.008 Sum_probs=33.3
Q ss_pred hCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCH-HHHHHHHHhCCCCceEEEEeC
Q 043826 27 SIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTR-HEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 27 aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~-~e~~~ll~~aGf~~~~~~~~~ 94 (104)
++.+|.+++|+|-++....+.....+............. ---.|+. ..+..+.++.|+....+....
T Consensus 110 ~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~-~vvd~~~~~g~~~l~~~~gv~v~sl~~~~ 177 (187)
T PRK12560 110 GIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVI-CVIEKTQNNGRKKLFTQTGINVKSLVKID 177 (187)
T ss_pred CCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEE-EEEEecccchHHHHhhccCCcEEEEEEEE
Confidence 467899999999988655321100000000000000000 0122433 346777788898877776653
No 363
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=24.05 E-value=1.6e+02 Score=17.28 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCceEEEEeCC---CeEEEEE
Q 043826 73 RHEFMTLATGAGFSGMSCERAIG---NLWVMEF 102 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~~~---~~~vie~ 102 (104)
-.|+.+.++++|.+..++...+. .+.++|+
T Consensus 25 WPEv~~~l~~~Gi~~ysIf~~g~~~~LF~~~E~ 57 (106)
T PF05336_consen 25 WPEVLAALREAGIRNYSIFRDGDTGRLFMYMET 57 (106)
T ss_dssp -HHHHHHHHHCTEEEEEEEEETTTTEEEEEEEE
T ss_pred CHHHHHHHHHCCCeEEEEEEeCCCCEEEEEEEe
Confidence 45889999999999999998864 4666665
No 364
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=24.03 E-value=1e+02 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=20.1
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEe
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 93 (104)
+...++..++.+++++.+...+.+...
T Consensus 186 dE~~~~~~~~~~~i~~~~~d~v~~k~~ 212 (265)
T cd03315 186 DESAFTPHDAFRELALGAADAVNIKTA 212 (265)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEecc
Confidence 556688889999888777777766543
No 365
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=24.00 E-value=35 Score=23.54 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=23.4
Q ss_pred ccccccCChHHHHHHHHHHHhhCCCCCE
Q 043826 6 LTILHDWNDEHCLKLLKNCYKSIPEDGK 33 (104)
Q Consensus 6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~ 33 (104)
..-|||....-...|.+++.+||..|..
T Consensus 64 TGHLHHiEPKRVKvIVeEv~qaltegkl 91 (299)
T PRK13245 64 TGHLHHLEPKRVKIIVEEVRQALTEGKL 91 (299)
T ss_pred eccccccChhhhhHHHHHHHHHHhhhhH
Confidence 3458999888899999999999997744
No 366
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.97 E-value=84 Score=23.51 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=22.9
Q ss_pred hhcCCCceecCH---HHHHHHHHhCCCCceEEEEeC
Q 043826 62 MIQRPDGKERTR---HEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 62 ~~~~~~g~~rt~---~e~~~ll~~aGf~~~~~~~~~ 94 (104)
|..+ +|..|-- ..++.+|.+|||..+.++.+.
T Consensus 77 mt~T-gGpCRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 77 MTQT-GGPCRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred EecC-CCCcchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 4344 4444432 467999999999999999874
No 367
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=23.92 E-value=1.1e+02 Score=16.63 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=18.1
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
..+.+++.++|++ .|.|.++|-+.-
T Consensus 7 ~i~r~~Ae~lL~~-----~~~G~FLvR~s~ 31 (84)
T smart00252 7 FISREEAEKLLKN-----EGDGDFLVRDSE 31 (84)
T ss_pred cCCHHHHHHHHhc-----CCCcEEEEEcCC
Confidence 5677889999987 346777777654
No 368
>PF14001 YdfZ: YdfZ protein
Probab=23.76 E-value=51 Score=17.94 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=12.5
Q ss_pred HhhCCCCCEEEEEee
Q 043826 25 YKSIPEDGKVIVVEL 39 (104)
Q Consensus 25 ~~aL~pgg~l~i~d~ 39 (104)
++++.+|+++++.+.
T Consensus 7 RN~i~~G~rVMiagt 21 (64)
T PF14001_consen 7 RNAITTGSRVMIAGT 21 (64)
T ss_pred cCcCCCCCEEEEcCC
Confidence 568899999988775
No 369
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=23.75 E-value=1.6e+02 Score=18.69 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
+....+++-+.+.|+|+|.+++...
T Consensus 133 ~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 133 ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 4456667777777777666555554
No 370
>TIGR03318 YdfZ_fam putative selenium-binding protein YdfZ. This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none.
Probab=23.74 E-value=60 Score=17.68 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=13.0
Q ss_pred HHhhCCCCCEEEEEee
Q 043826 24 CYKSIPEDGKVIVVEL 39 (104)
Q Consensus 24 ~~~aL~pgg~l~i~d~ 39 (104)
=++++.+|++++|...
T Consensus 7 nRNait~G~rVMia~t 22 (65)
T TIGR03318 7 NRNAITTGSRVMIAGT 22 (65)
T ss_pred cccccCCCcEEEEecC
Confidence 3578999999988775
No 371
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=23.74 E-value=72 Score=25.14 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=26.6
Q ss_pred CceecCHHHHHHHHHhCCCCceEEEEeCCCe
Q 043826 67 DGKERTRHEFMTLATGAGFSGMSCERAIGNL 97 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~ 97 (104)
-|...+.+++...|.+.||+.+..+..+|.+
T Consensus 163 ~G~~i~~~~l~~~L~~~GY~r~~~v~~~GeF 193 (652)
T PRK05298 163 VGQEIDRRELLRRLVDLQYERNDIDFQRGTF 193 (652)
T ss_pred CCCCcCHHHHHHHHHHcCCcccCccCCCceE
Confidence 6788999999999999999999887766644
No 372
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=23.69 E-value=1.1e+02 Score=20.06 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhCCCCCEEEEE
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~ 37 (104)
...+.++++.+.|+.|+.++|.
T Consensus 83 ~~~~~~~~~~~~L~~G~~l~IF 104 (210)
T cd07986 83 KNRESLREALRHLKNGGALIIF 104 (210)
T ss_pred hhHHHHHHHHHHHhCCCEEEEE
Confidence 4678999999999998877655
No 373
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=23.66 E-value=1.8e+02 Score=18.34 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=46.0
Q ss_pred cccCChHHHHHHHHHHHhhCC----C-CCEEEEEeeecCCCCC--------CCcccchhhhhhhhhhhcCCCce--ecCH
Q 043826 9 LHDWNDEHCLKLLKNCYKSIP----E-DGKVIVVELMLPEVPN--------TSIESKSNFHFDVLMMIQRPDGK--ERTR 73 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~----p-gg~l~i~d~~~~~~~~--------~~~~~~~~~~~~l~m~~~~~~g~--~rt~ 73 (104)
+--|++++....+++..+++. . .|.|++.|..-..+.. .+.. ....-.++.|+......+ .-+.
T Consensus 33 v~~~~~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~~~~~~~-~viaGvNLPmLle~~~~r~~~~~~ 111 (143)
T COG2893 33 VDFVPGEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLAMEGPRV-EVIAGVNLPMLLEALLARDEGMSL 111 (143)
T ss_pred EEeecCCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHHhhCCCc-eEEecCCHHHHHHHHhcccccCCH
Confidence 334566555555555554433 3 7999999977543311 0100 122345666655322333 2355
Q ss_pred HHHHHHHHhCCCCceEEEEe
Q 043826 74 HEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 74 ~e~~~ll~~aGf~~~~~~~~ 93 (104)
++..+-..+.|...++....
T Consensus 112 ~e~~~~~~e~~~~~v~~~~~ 131 (143)
T COG2893 112 DELVAQAAESGRQGVKSLVA 131 (143)
T ss_pred HHHHHHHHHhcccceEEecc
Confidence 78888888888777766544
No 374
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=23.66 E-value=79 Score=19.44 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCCceEEEEe
Q 043826 73 RHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~ 93 (104)
..++.+.++++||+++.....
T Consensus 15 ~g~Il~~i~~~Gf~I~~~k~~ 35 (132)
T cd04418 15 AEEIEDIILESGFTIVQKRKL 35 (132)
T ss_pred HHHHHHHHHHCCCEEEEeeee
Confidence 567888888889988876654
No 375
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.48 E-value=72 Score=18.46 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=12.9
Q ss_pred CceecCHHHHHHHHHhCCCCc
Q 043826 67 DGKERTRHEFMTLATGAGFSG 87 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~ 87 (104)
|...+|.+++.+-|+..||..
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT-
T ss_pred CCCCCCHHHHHHHHHhcCcCC
Confidence 555667777777777777764
No 376
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.46 E-value=1.7e+02 Score=17.21 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=26.7
Q ss_pred CceecCHHHHHHHHHhCCCCce----EEEEeCCCeEEEEEE
Q 043826 67 DGKERTRHEFMTLATGAGFSGM----SCERAIGNLWVMEFY 103 (104)
Q Consensus 67 ~g~~rt~~e~~~ll~~aGf~~~----~~~~~~~~~~vie~~ 103 (104)
.|..-+.+.+.+.+++.|+++. .++...+..+.||+.
T Consensus 8 rGf~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik 48 (96)
T COG4004 8 RGFKPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIK 48 (96)
T ss_pred cCCCCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEe
Confidence 4666788889999999997754 344455777777764
No 377
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=23.37 E-value=2e+02 Score=20.64 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
+++...-++++.+++...|..++++..
T Consensus 72 ~~~~i~~~~~l~~~vh~~g~~~~~QL~ 98 (353)
T cd02930 72 SPRQAAGHRLITDAVHAEGGKIALQIL 98 (353)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEeecc
Confidence 445788899999999987777777753
No 378
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=23.35 E-value=88 Score=19.96 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCCceEEEE
Q 043826 74 HEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 74 ~e~~~ll~~aGf~~~~~~~ 92 (104)
.+|.+.++..||++..+..
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~~ 58 (149)
T COG3019 40 DEWAQHMKANGFEVKVVET 58 (149)
T ss_pred HHHHHHHHhCCcEEEEeec
Confidence 5899999999999887654
No 379
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=23.34 E-value=89 Score=21.35 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEE
Q 043826 15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 91 (104)
+...-.|.+..+.|++.|.+.|.+----+..-. .+.....+-.- . ..+...-.+++++|.+.|..++++.
T Consensus 72 E~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv---~rv~~~~~~~~---~-~~~~~~I~~FEr~L~~~G~~IlKff 141 (230)
T TIGR03707 72 ERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGV---ERVMGFCTDEE---Y-EEFLRQVPEFERMLVRDGIHLFKYW 141 (230)
T ss_pred HHcChHHHHHHHhCCCCCeEEEEeCchhhhHHH---HHhcCCCCHHH---H-HHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 347788999999999999999998532111100 00000000000 0 1222345678888999998887764
No 380
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=23.32 E-value=98 Score=21.43 Aligned_cols=22 Identities=9% Similarity=0.442 Sum_probs=18.3
Q ss_pred HHHHHHHhhCCCCCEEEEEeee
Q 043826 19 KLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
..+..+.+.|+|+|+++++-..
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEeec
Confidence 4678888999999999988753
No 381
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=23.32 E-value=63 Score=18.45 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=15.3
Q ss_pred cCChHHHHHHHHHHHhhCCCC
Q 043826 11 DWNDEHCLKLLKNCYKSIPED 31 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pg 31 (104)
+|.|+.+++.|=.+++.|.++
T Consensus 54 ~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 54 DYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp TCCCCHHHHHHHHHHHHH-TT
T ss_pred cccccHHHHHHHHHHHHcCCC
Confidence 467777888888888887765
No 382
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=23.13 E-value=1.3e+02 Score=18.98 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
.+++.+++++|.++...+-+++|-=.+
T Consensus 60 G~eA~~Lv~r~~~av~~~~KVli~Frl 86 (137)
T PF12101_consen 60 GEEAKELVRRCQKAVDEDKKVLIGFRL 86 (137)
T ss_pred cHHHHHHHHHHHhhcccCCcEEEEEEe
Confidence 468999999999999888777655433
No 383
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=23.01 E-value=1e+02 Score=21.23 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
+..+....+.++|+.||+++++-.
T Consensus 34 ~I~~av~~~~~~l~~ggrl~~~Ga 57 (257)
T cd05007 34 QIARAVDAAAERLRAGGRLIYVGA 57 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcC
Confidence 345667778888999999998874
No 384
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=23.01 E-value=1.8e+02 Score=19.96 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 043826 19 KLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
..+....++|+++|+++.+....
T Consensus 245 ~~~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 245 PALEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred HHHHHHHHHhhcCCEEEEEcccC
Confidence 46677788899999998877644
No 385
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=22.87 E-value=1.8e+02 Score=20.94 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCC
Q 043826 18 LKLLKNCYKSIPEDGKVIVVELMLPE 43 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~~~~~ 43 (104)
..+|+.=++-|.|||++++.=...++
T Consensus 163 ~~FL~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 163 SSFLKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHHHHhhheeccCcEEEEEEeeccc
Confidence 34555555668999999998876655
No 386
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=22.85 E-value=1.6e+02 Score=19.42 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=18.9
Q ss_pred CCceecCHHHHHHHHHhCCCCceEE
Q 043826 66 PDGKERTRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 66 ~~g~~rt~~e~~~ll~~aGf~~~~~ 90 (104)
.+|..++.++++++++ .|...+-+
T Consensus 194 a~GGi~~~~di~~~~~-~Gadgv~i 217 (230)
T TIGR00007 194 ASGGVSSIDDLIALKK-LGVYGVIV 217 (230)
T ss_pred EeCCCCCHHHHHHHHH-CCCCEEEE
Confidence 3788899999999875 88776544
No 387
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=22.84 E-value=1.9e+02 Score=18.55 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826 13 NDEHCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
+|+.+..+.+.+.+...++++++++-.
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~iaclst 34 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRIACLST 34 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 455567777777776667788877763
No 388
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=22.76 E-value=1.5e+02 Score=16.34 Aligned_cols=30 Identities=7% Similarity=-0.054 Sum_probs=20.7
Q ss_pred ceecCHHHHHHHHHhCCCCceEEEEeCCCe
Q 043826 68 GKERTRHEFMTLATGAGFSGMSCERAIGNL 97 (104)
Q Consensus 68 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~ 97 (104)
....+.++..+.+++.|+++.++..-..+.
T Consensus 26 ~~~~~~~~~~~~l~~~G~~v~~ve~~~~g~ 55 (83)
T PF13670_consen 26 ADWLSIEQAVAKLEAQGYQVREVEFDDDGC 55 (83)
T ss_pred cccCCHHHHHHHHHhcCCceEEEEEcCCCE
Confidence 334578999999999999655555423333
No 389
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=22.74 E-value=79 Score=19.45 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCCceEEEEe
Q 043826 73 RHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 73 ~~e~~~ll~~aGf~~~~~~~~ 93 (104)
..++.+.++++||+++....+
T Consensus 15 ~g~Il~~i~~~Gf~I~~~k~~ 35 (131)
T cd04415 15 IGKIIQIIEDAGFTITKAKMT 35 (131)
T ss_pred HHHHHHHHHHCCCEEEEeeee
Confidence 568888888899998876654
No 390
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=22.74 E-value=80 Score=20.62 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhCCCCCEEEEE
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVV 37 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~ 37 (104)
.+.+++.++.+.|+.|.+++|+
T Consensus 118 ~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 118 AAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEE
Confidence 3677899999999998888765
No 391
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=22.69 E-value=1e+02 Score=22.42 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.2
Q ss_pred HHHHHHHhhCCCCCEEEEEeee
Q 043826 19 KLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
..++.+.+.+++||+++++-..
T Consensus 280 ~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 280 TVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HHHHHHHHHhhCCCEEEEeeec
Confidence 5788889999999999998864
No 392
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=22.68 E-value=1.3e+02 Score=16.54 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=17.1
Q ss_pred CHHHHHHHHHhCCCCceEEE
Q 043826 72 TRHEFMTLATGAGFSGMSCE 91 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~ 91 (104)
+..|+.+.|+.-||..++..
T Consensus 8 ~~ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 8 KAKEVIKALEKDGFQLVRQK 27 (66)
T ss_pred CHHHHHHHHHhCCcEEEEee
Confidence 56799999999999988764
No 393
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.60 E-value=77 Score=24.04 Aligned_cols=17 Identities=29% Similarity=0.786 Sum_probs=15.5
Q ss_pred ccCChHHHHHHHHHHHh
Q 043826 10 HDWNDEHCLKLLKNCYK 26 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~ 26 (104)
|+|+|++...+|.+++.
T Consensus 455 ~~W~d~eIellLseA~~ 471 (484)
T KOG1092|consen 455 HNWSDREIELLLSEAFR 471 (484)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999999885
No 394
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.50 E-value=1.4e+02 Score=20.57 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=20.1
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826 11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
|-+-+.-...+..+.+-|+|||.+ |+|.+.
T Consensus 163 DadK~~Y~~y~~~~l~ll~~GGvi-v~DNvl 192 (247)
T PLN02589 163 DADKDNYINYHKRLIDLVKVGGVI-GYDNTL 192 (247)
T ss_pred cCCHHHhHHHHHHHHHhcCCCeEE-EEcCCC
Confidence 333444567777888899999886 456543
No 395
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=22.42 E-value=1.5e+02 Score=22.24 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=35.3
Q ss_pred EEEeccccccCChHHHHHHHHHHHhh-CCCCCEEEEEeeecCCCC
Q 043826 2 INCTLTILHDWNDEHCLKLLKNCYKS-IPEDGKVIVVELMLPEVP 45 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~~~~iL~~~~~a-L~pgg~l~i~d~~~~~~~ 45 (104)
+|+=.+.+|+-.-+++.+.|+..-+. -.|.-.++..|..+|...
T Consensus 27 ~~iD~~l~HdvTsP~a~~~lr~~g~kV~~p~k~~~~~DH~vPt~~ 71 (423)
T COG0065 27 LYIDLHLVHDVTSPQAFEGLREAGRKVRDPEKTVATFDHNVPTPD 71 (423)
T ss_pred EEeeeeeeeccccHHHHHHHHHhCCcccCccceEEEecCCCCCcc
Confidence 57778899999999999999976543 347888999999887653
No 396
>PF15603 Imm45: Immunity protein 45
Probab=22.32 E-value=1.7e+02 Score=16.71 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826 13 NDEHCLKLLKNCYKSIPEDGKVIVVE 38 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~pgg~l~i~d 38 (104)
++.+..+|++.+.+.+...|.-+.+|
T Consensus 57 t~~e~q~II~aI~~~~~~~~~~v~fE 82 (82)
T PF15603_consen 57 TIAERQKIIEAIEKYFSERGMTVDFE 82 (82)
T ss_pred CHHHHHHHHHHHHHHHhcCceEEEeC
Confidence 34567899999999988887776654
No 397
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=22.31 E-value=72 Score=17.20 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=13.5
Q ss_pred HhhCCCCCEEEEEeeecC
Q 043826 25 YKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 25 ~~aL~pgg~l~i~d~~~~ 42 (104)
.++|+||.+++|.=...+
T Consensus 35 ~~~L~~G~kV~V~yd~~~ 52 (61)
T PF07076_consen 35 FDGLKPGMKVVVFYDEVD 52 (61)
T ss_pred ccccCCCCEEEEEEEccC
Confidence 568999999888765443
No 398
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=22.29 E-value=1e+02 Score=22.00 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=23.0
Q ss_pred cccCChHHHHHHHHHHHhhCCCCC-EEEEEe
Q 043826 9 LHDWNDEHCLKLLKNCYKSIPEDG-KVIVVE 38 (104)
Q Consensus 9 lH~~~d~~~~~iL~~~~~aL~pgg-~l~i~d 38 (104)
=|.|+++.+.++++.+.+..+.+| .++|.-
T Consensus 159 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~vtt 189 (311)
T PF06258_consen 159 HYRWDEEDAERLLDQLAALAAAYGGSLLVTT 189 (311)
T ss_pred CcccCHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 378899988899998888887654 666654
No 399
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.16 E-value=63 Score=14.76 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=9.7
Q ss_pred HHHHHHHHhC---CCCceE
Q 043826 74 HEFMTLATGA---GFSGMS 89 (104)
Q Consensus 74 ~e~~~ll~~a---Gf~~~~ 89 (104)
.||.+++.+| |++..+
T Consensus 3 ~EW~~Li~eA~~~Gls~ee 21 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEE 21 (30)
T ss_dssp HHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHcCCCHHH
Confidence 5888888765 766543
No 400
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=22.01 E-value=51 Score=23.73 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCC-----CCEE
Q 043826 18 LKLLKNCYKSIPE-----DGKV 34 (104)
Q Consensus 18 ~~iL~~~~~aL~p-----gg~l 34 (104)
..+|.++.+||.| ||.+
T Consensus 52 n~~L~~a~~al~P~~iRvGGsl 73 (319)
T PF03662_consen 52 NPILINAAKALSPLYIRVGGSL 73 (319)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 5788999999998 7775
No 401
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=21.95 E-value=1e+02 Score=21.59 Aligned_cols=23 Identities=4% Similarity=0.049 Sum_probs=18.9
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 043826 19 KLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
..+..+.++|++||+++++....
T Consensus 241 ~~~~~~~~~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 241 QTVELAIEIAGPRAQLALVGTLH 263 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEccCC
Confidence 47788889999999999987543
No 402
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=21.83 E-value=1.9e+02 Score=20.74 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCC----ceEEEEeCCCeEEEEEEC
Q 043826 75 EFMTLATGAGFS----GMSCERAIGNLWVMEFYK 104 (104)
Q Consensus 75 e~~~ll~~aGf~----~~~~~~~~~~~~vie~~~ 104 (104)
-+..++++.|.. ..++.+++...++||.++
T Consensus 76 lm~~i~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ 109 (311)
T cd05167 76 LFKNIFQSAGLDLYLFPYRVVATGPGCGVIEVVP 109 (311)
T ss_pred HHHHHHHHCCCCeEeEEEeEEecCCCceEEEEeC
Confidence 467777888874 457788888999999875
No 403
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=21.83 E-value=2.1e+02 Score=17.79 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCce-------ecCHHHHHHHHHh
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGK-------ERTRHEFMTLATG 82 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~-------~rt~~e~~~ll~~ 82 (104)
+..-+|.++.+.. +++++-+...-.++++.- +.++ ....+-.+..+.+|+ .++.+++.+++++
T Consensus 53 D~avvleELa~e~-~~~~v~~akVDiD~~~~L--A~~f-gV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~ 122 (132)
T PRK11509 53 DNPVMIGELLREF-PDYTWQVAIADLEQSEAI--GDRF-GVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRG 122 (132)
T ss_pred cHHHHHHHHHHHh-cCCceEEEEEECCCCHHH--HHHc-CCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHH
Confidence 5678999999988 456555555444544321 1111 122222233333553 3577788887764
No 404
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=21.69 E-value=1e+02 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.1
Q ss_pred hhCCCCCEEEEEeeec
Q 043826 26 KSIPEDGKVIVVELML 41 (104)
Q Consensus 26 ~aL~pgg~l~i~d~~~ 41 (104)
=+|+||-+++|-..++
T Consensus 7 iSLk~gEki~iNGAVl 22 (148)
T COG5443 7 ISLKPGEKIFINGAVL 22 (148)
T ss_pred EeecCCCEEEEeccEE
Confidence 3678888877766554
No 405
>TIGR02277 PaaX_trns_reg phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription.
Probab=21.58 E-value=71 Score=22.36 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=25.7
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826 10 HDWNDEHCLKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
.||+-.+++++..++++.|.|.+.-.+.+...
T Consensus 230 ~dW~G~~Ar~lf~~l~~~L~~~a~~~~~~~~~ 261 (280)
T TIGR02277 230 ADWPGDAARHLCARIYRTLAPPAERFLDSVGA 261 (280)
T ss_pred CCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence 58999999999999999999876655544433
No 406
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=21.56 E-value=74 Score=14.37 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=9.0
Q ss_pred ccCChHHHHHHHH
Q 043826 10 HDWNDEHCLKLLK 22 (104)
Q Consensus 10 H~~~d~~~~~iL~ 22 (104)
|++++++..+=|.
T Consensus 14 h~ls~ee~~~RL~ 26 (28)
T PF12368_consen 14 HGLSEEEVAERLA 26 (28)
T ss_pred cCCCHHHHHHHHH
Confidence 7888887665554
No 407
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=21.46 E-value=1.4e+02 Score=15.46 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=25.1
Q ss_pred ccCChHHHHHHHHHHHhhCC------CCCEEEEEeeecCCC
Q 043826 10 HDWNDEHCLKLLKNCYKSIP------EDGKVIVVELMLPEV 44 (104)
Q Consensus 10 H~~~d~~~~~iL~~~~~aL~------pgg~l~i~d~~~~~~ 44 (104)
...++++.+++.+.+.+++. |....++++.+.+++
T Consensus 10 ~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~~~ 50 (64)
T PRK01964 10 EGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVPSSH 50 (64)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcChHH
Confidence 34678889999999988875 456666766655544
No 408
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=21.46 E-value=1.1e+02 Score=21.35 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=18.4
Q ss_pred HHHHHHHhhCCCCCEEEEEeee
Q 043826 19 KLLKNCYKSIPEDGKVIVVELM 40 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~~ 40 (104)
..+....++|++||+++++-..
T Consensus 235 ~~~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 235 GLVPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred HHHHHHHHhhCCCcEEEEEecc
Confidence 4688888999999999988753
No 409
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=21.45 E-value=2e+02 Score=19.64 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNT 47 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~ 47 (104)
....-|+-...-|..|..+++.|.++++-+.+
T Consensus 158 hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~ 189 (237)
T COG3510 158 HVLAELKLLAPLLSAGDYLVVEDSNVNDLPGP 189 (237)
T ss_pred HHHHHHHHhhhHhhcCceEEEecccccCCCCc
Confidence 34444555556666799999999998877643
No 410
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=21.42 E-value=1.9e+02 Score=17.51 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeec
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
-.+++++++++++--|++..+|.-.
T Consensus 36 ~Lk~~~~~A~~vkG~gT~~~vdCgd 60 (112)
T cd03067 36 LLKLLSDVAQAVKGQGTIAWIDCGD 60 (112)
T ss_pred HHHHHHHHHHHhcCceeEEEEecCC
Confidence 5789999999999889999999764
No 411
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=21.24 E-value=1.2e+02 Score=21.33 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=17.8
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 043826 19 KLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~ 39 (104)
..++.+.+.|++||+++++-.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHHHHhCcCCcEEEEEee
Confidence 467788889999999998874
No 412
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=21.24 E-value=2e+02 Score=17.28 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=18.6
Q ss_pred CCceecCHHHHHHHHHhCCCCc
Q 043826 66 PDGKERTRHEFMTLATGAGFSG 87 (104)
Q Consensus 66 ~~g~~rt~~e~~~ll~~aGf~~ 87 (104)
.++..++..++.+.++..|...
T Consensus 43 ~gs~~~~~~~l~~~l~~~G~~~ 64 (149)
T PF00675_consen 43 RGSKKYSSDELQEELESLGASF 64 (149)
T ss_dssp SBBSSSBHHHHHHHHHHTTCEE
T ss_pred cccchhhhhhhHHHhhhhcccc
Confidence 3677899999999999999655
No 413
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=21.22 E-value=1.1e+02 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=17.5
Q ss_pred eecCHHHHHHHHHhCCCCceEEEE
Q 043826 69 KERTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 69 ~~rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
...|..+++.+++.....+++...
T Consensus 269 ~~~~~~~~~~li~~~a~Divq~d~ 292 (394)
T PRK15440 269 HEATLQGFRTLLEMGCIDIIQPDV 292 (394)
T ss_pred CccCHHHHHHHHHcCCCCEEeCCc
Confidence 457888999999876666665443
No 414
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.19 E-value=2.5e+02 Score=18.91 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhh-hhhhcCCCceecCHHHHHHHHHhCCCCceEE
Q 043826 17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDV-LMMIQRPDGKERTRHEFMTLATGAGFSGMSC 90 (104)
Q Consensus 17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l-~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 90 (104)
..++++++.+. + +.+++.|.-.+....++........... .+-.. .+|..+|.+++.++++ +|...+-+
T Consensus 148 ~~~~~~~~~~~--~-~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi-~~GGi~s~edi~~l~~-~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--P-EELIVLDIDRVGSGQGPDLELLERLAARADIPVI-AAGGVRSVEDLELLKK-LGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--C-CeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEE-EeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 45666666654 3 4677777644333333221111111111 11222 3788999999999997 68665544
No 415
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=21.19 E-value=82 Score=17.97 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCC
Q 043826 73 RHEFMTLATGAGF 85 (104)
Q Consensus 73 ~~e~~~ll~~aGf 85 (104)
..++.+||.+-||
T Consensus 75 ~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 75 VEEVKKWLLEKGF 87 (87)
T ss_pred HHHHHHHHHHCcC
Confidence 5799999999998
No 416
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism]
Probab=21.12 E-value=1.5e+02 Score=20.23 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHhhCCCCCEEEEEee
Q 043826 18 LKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
.+|-..+.++++|+|..++.|.
T Consensus 183 kQIA~a~s~~v~p~gVaVV~Ea 204 (247)
T KOG2698|consen 183 KQIAVALSQAVQPAGVAVVVEA 204 (247)
T ss_pred HHHHHHHHHhcCccceEEEEec
Confidence 4455556678889999999994
No 417
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=21.04 E-value=1.9e+02 Score=22.23 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=27.3
Q ss_pred EEEeccccccCChHH-HHHHH-HHHHhhCCCCCEEEEEeeecC
Q 043826 2 INCTLTILHDWNDEH-CLKLL-KNCYKSIPEDGKVIVVELMLP 42 (104)
Q Consensus 2 ~y~~~~vlH~~~d~~-~~~iL-~~~~~aL~pgg~l~i~d~~~~ 42 (104)
+.+..++||...... ...+. +..+.+.+||+.++|+|...+
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 346677888776543 33333 445577889999999996543
No 418
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=21.00 E-value=54 Score=20.90 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=5.9
Q ss_pred ChHHHHHHHHHHHhhCCC-CCEEEEEe
Q 043826 13 NDEHCLKLLKNCYKSIPE-DGKVIVVE 38 (104)
Q Consensus 13 ~d~~~~~iL~~~~~aL~p-gg~l~i~d 38 (104)
+.+.++++++.+.+.+.| +|++++.=
T Consensus 8 d~~~r~~Vf~eVi~~~GPpDaTVvVsv 34 (146)
T PF08952_consen 8 DEEKRESVFEEVISSQGPPDATVVVSV 34 (146)
T ss_dssp ------------S-----TT-EEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 345688999999999975 88887654
No 419
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=20.89 E-value=54 Score=21.62 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=17.6
Q ss_pred ccccCChHH-HHHHHHHHHhhCCC
Q 043826 8 ILHDWNDEH-CLKLLKNCYKSIPE 30 (104)
Q Consensus 8 vlH~~~d~~-~~~iL~~~~~aL~p 30 (104)
+|-++|+++ +.++|++++..+.|
T Consensus 8 ~L~~~p~~~~A~~lL~rlA~~v~p 31 (186)
T PF08325_consen 8 VLPNLPDEEEALELLERLAADVKP 31 (186)
T ss_pred eCCCCcCHHHHHHHHHHHHHHHHH
Confidence 455677554 99999999988665
No 420
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=20.79 E-value=2.2e+02 Score=19.77 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCceecCHHHHHHHHHhCCCCceEEEEeCCCeEEE
Q 043826 66 PDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVM 100 (104)
Q Consensus 66 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi 100 (104)
+.|++-+..|++.++...|+...+...+.++..|.
T Consensus 99 ~~gk~f~p~EI~~LL~~~~~~~~~~~~i~~g~~v~ 133 (246)
T PRK11611 99 PTGKEFMPREISLLLGEEGNPLSSQEVLEGGESLL 133 (246)
T ss_pred CCCcccCHHHHHHHHhccCCCcceeEEeCCCCEEE
Confidence 35888999999999999999887766666555544
No 421
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=20.74 E-value=88 Score=18.10 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 043826 14 DEHCLKLLKNCYKSIPEDGKVIVVELMLPE 43 (104)
Q Consensus 14 d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~ 43 (104)
.+...++.+++.+|++.-|.+.|...-++.
T Consensus 10 ~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~ 39 (116)
T PF14226_consen 10 PADREEVAEQLRDACEEWGFFYLVNHGIPQ 39 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEESSSSSH
T ss_pred CccHHHHHHHHHHHHHhCCEEEEecccccc
Confidence 456789999999999999999998875543
No 422
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=1.2e+02 Score=19.65 Aligned_cols=23 Identities=4% Similarity=0.047 Sum_probs=18.2
Q ss_pred CHHHHHHHHHhCCCCceEEEEeC
Q 043826 72 TRHEFMTLATGAGFSGMSCERAI 94 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~~ 94 (104)
+.+++.+||.+-|+-..++.+..
T Consensus 6 ~d~~I~~WL~EeG~~~~kv~~~n 28 (161)
T COG5440 6 SDNMILDWLAEEGNVSVKVPDEN 28 (161)
T ss_pred HHHHHHHHHHHhCceeeccCCCC
Confidence 46789999999998887765543
No 423
>PHA02517 putative transposase OrfB; Reviewed
Probab=20.63 E-value=83 Score=21.44 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=20.5
Q ss_pred CCCceecCHHHHHHHHHhCCCCceE
Q 043826 65 RPDGKERTRHEFMTLATGAGFSGMS 89 (104)
Q Consensus 65 ~~~g~~rt~~e~~~ll~~aGf~~~~ 89 (104)
+++|.+++..++.+++++.|.+..-
T Consensus 175 sD~G~~y~s~~~~~~~~~~gi~~~~ 199 (277)
T PHA02517 175 SDKGSQYVSLAYTQRLKEAGIRAST 199 (277)
T ss_pred cccccccchHHHHHHHHHcCccccc
Confidence 4788889989999999999966553
No 424
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=20.59 E-value=1.5e+02 Score=21.66 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 043826 16 HCLKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 16 ~~~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
--.+.|+.+.+.|++||++++.-+
T Consensus 288 Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 288 LYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHHHHhhcCcEEEEecC
Confidence 356788999999999999877654
No 425
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=20.53 E-value=1.3e+02 Score=20.50 Aligned_cols=23 Identities=13% Similarity=0.440 Sum_probs=18.5
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 043826 19 KLLKNCYKSIPEDGKVIVVELML 41 (104)
Q Consensus 19 ~iL~~~~~aL~pgg~l~i~d~~~ 41 (104)
..++.+.+.++|+|+++++-...
T Consensus 199 ~~~~~~~~~l~~~G~iv~~G~~~ 221 (280)
T TIGR03366 199 AAVRACLESLDVGGTAVLAGSVF 221 (280)
T ss_pred HHHHHHHHHhcCCCEEEEeccCC
Confidence 45777888999999999887653
No 426
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=20.50 E-value=1.2e+02 Score=21.30 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHhCCCCceEEEE
Q 043826 71 RTRHEFMTLATGAGFSGMSCER 92 (104)
Q Consensus 71 rt~~e~~~ll~~aGf~~~~~~~ 92 (104)
.+.+|+.+++++|||..++-..
T Consensus 283 ~~~~~l~~~~~~~g~~~~~r~~ 304 (309)
T TIGR00423 283 LTVEELIEAIKDAGRVPAQRDT 304 (309)
T ss_pred CCHHHHHHHHHHcCCCeeecCC
Confidence 4789999999999999876443
No 427
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=20.41 E-value=1.3e+02 Score=17.85 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=20.3
Q ss_pred CCCceecCHHHHHHHHHhCCCCceE
Q 043826 65 RPDGKERTRHEFMTLATGAGFSGMS 89 (104)
Q Consensus 65 ~~~g~~rt~~e~~~ll~~aGf~~~~ 89 (104)
.+.+..-|.+++.++++.+|.++..
T Consensus 12 ~d~~~~~Tae~I~~ilkAaGveve~ 36 (103)
T cd05831 12 HDDGIEITADNINALLKAAGVNVEP 36 (103)
T ss_pred ccCCCCCCHHHHHHHHHHcCCcccH
Confidence 3578889999999999999966543
No 428
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=20.40 E-value=88 Score=17.34 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=8.7
Q ss_pred HHHHHHHHhCCCCce
Q 043826 74 HEFMTLATGAGFSGM 88 (104)
Q Consensus 74 ~e~~~ll~~aGf~~~ 88 (104)
+.+.+.++++||...
T Consensus 54 ~~LN~~l~~~Gf~~~ 68 (73)
T PF14794_consen 54 AKLNQALQKAGFDEE 68 (73)
T ss_dssp HHHHHHHHHTT----
T ss_pred HHHHHHHHHcCCCce
Confidence 446788999999854
No 429
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=20.33 E-value=74 Score=19.49 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=16.5
Q ss_pred CHHHHHHHHHhCCCCceEEEEe
Q 043826 72 TRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~ 93 (104)
...++.+.++++||+++.....
T Consensus 15 ~~g~Il~~i~~~Gf~I~~~k~~ 36 (132)
T cd04416 15 KKDEILEKIKEAGFEILAQKEM 36 (132)
T ss_pred HHHHHHHHHHHCCCEEEEeeee
Confidence 3467888888889988876654
No 430
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=20.21 E-value=1.3e+02 Score=18.41 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=18.4
Q ss_pred CHHHHHHHHHhCCCCceEEEEe
Q 043826 72 TRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~ 93 (104)
...++.+.++++||+++....+
T Consensus 16 ~~g~Il~~i~~~Gf~I~~~k~~ 37 (133)
T cd00595 16 LLGEIIMRIEDAGFEIVAMKEL 37 (133)
T ss_pred cHHHHHHHHHHcCCEEEEeeee
Confidence 4568999999999999987765
No 431
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=20.18 E-value=1.2e+02 Score=19.17 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=14.1
Q ss_pred HHHHHHHHhhCCCCCEEEEEee
Q 043826 18 LKLLKNCYKSIPEDGKVIVVEL 39 (104)
Q Consensus 18 ~~iL~~~~~aL~pgg~l~i~d~ 39 (104)
...|.-+.+.|+|||.+++.-.
T Consensus 119 ~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 119 LSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HHHHHHHHHHHCTTEEEEEEES
T ss_pred HHHHHHHHhhhcCCCEEEEEec
Confidence 3444444566899998876554
No 432
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.15 E-value=1.2e+02 Score=15.74 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=13.5
Q ss_pred CHHHHHHHHHhCCCCce
Q 043826 72 TRHEFMTLATGAGFSGM 88 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~ 88 (104)
..++..+-|+++||++.
T Consensus 53 ~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 53 NPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHCCCeee
Confidence 35589999999999764
No 433
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=20.11 E-value=1.2e+02 Score=18.40 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.3
Q ss_pred CHHHHHHHHHhCCCCceEEEEe
Q 043826 72 TRHEFMTLATGAGFSGMSCERA 93 (104)
Q Consensus 72 t~~e~~~ll~~aGf~~~~~~~~ 93 (104)
...++.+.+.++||.++....+
T Consensus 16 ~~g~Ii~~l~~~Gf~I~~~k~~ 37 (135)
T PF00334_consen 16 HAGEIIDRLEEAGFEIVAMKMV 37 (135)
T ss_dssp -HHHHHHHHHHHT-EEEEEEEE
T ss_pred chHHHHHHHHHcCCeeeehhhh
Confidence 4568889999999999977654
Done!