Your job contains 1 sequence.
>043830
STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHR
GEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTN
VYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSA
MQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNF
HVFRRALC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043830
(248 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2144643 - symbol:KDTA "KDO transferase A" spec... 801 9.7e-80 1
TIGR_CMR|SPO_2800 - symbol:SPO_2800 "3-deoxy-D-manno-octu... 290 1.6e-25 1
UNIPROTKB|P0AC75 - symbol:waaA species:83333 "Escherichia... 282 1.2e-24 1
UNIPROTKB|Q9KVB3 - symbol:VC_0233 "3-deoxy-D-manno-octulo... 267 8.7e-23 1
TIGR_CMR|VC_0233 - symbol:VC_0233 "3-deoxy-D-manno-octulo... 267 8.7e-23 1
TIGR_CMR|CBU_0063 - symbol:CBU_0063 "3-deoxy-D-manno-octu... 235 3.2e-19 1
UNIPROTKB|Q74AU1 - symbol:kdtA "CMP-3-deoxy-D-manno-octul... 234 4.1e-19 1
TIGR_CMR|GSU_2259 - symbol:GSU_2259 "3-deoxy-D-manno-octu... 234 4.1e-19 1
TIGR_CMR|CPS_0118 - symbol:CPS_0118 "3-deoxy-D-manno-octu... 228 2.2e-18 1
TIGR_CMR|SO_4676 - symbol:SO_4676 "3-deoxy-D-manno-octulo... 226 2.9e-18 1
TIGR_CMR|CJE_0807 - symbol:CJE_0807 "3-deoxy-D-manno-octu... 165 2.8e-10 1
>TAIR|locus:2144643 [details] [associations]
symbol:KDTA "KDO transferase A" species:3702 "Arabidopsis
thaliana" [GO:0005886 "plasma membrane" evidence=ISM] [GO:0009058
"biosynthetic process" evidence=ISS] [GO:0016757 "transferase
activity, transferring glycosyl groups" evidence=ISS] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
UniPathway:UPA00360 Pfam:PF04413 EMBL:CP002688 GO:GO:0016740
EMBL:AB005235 EMBL:AL162506 EMBL:AY065115 EMBL:AY128758
IPI:IPI00530635 PIR:T48404 RefSeq:NP_195997.2 UniGene:At.28587
ProteinModelPortal:Q8VZA5 SMR:Q8VZA5 STRING:Q8VZA5 CAZy:GT30
PaxDb:Q8VZA5 PRIDE:Q8VZA5 EnsemblPlants:AT5G03770.1 GeneID:831727
KEGG:ath:AT5G03770 TAIR:At5g03770 eggNOG:COG1519
HOGENOM:HOG000257156 InParanoid:Q8VZA5 KO:K02527 OMA:KHGGHNP
PhylomeDB:Q8VZA5 ProtClustDB:CLSN2690130 Genevestigator:Q8VZA5
InterPro:IPR007507 Uniprot:Q8VZA5
Length = 447
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 154/246 (62%), Positives = 195/246 (79%)
Query: 1 STLQAIRFQLLEASPFTINFSGDLKYV-HEYDESEGDIGSIEDLKASLAHRQVWMASSIH 59
STLQ IRFQLL A PF IN+SGDLKYV +++ S G SI DLK LA +VW+ASS+H
Sbjct: 192 STLQGIRFQLLHAPPFVINYSGDLKYVVNKFHVSSGTSESIRDLKVELAEMKVWIASSLH 251
Query: 60 RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPR- 118
RGEE+V+L VH +L++ +P+ V IIVPRHP HG++IA KL+K+G+ VALRS++EKL PR
Sbjct: 252 RGEEEVILGVHNMLLESHPDSVVIIVPRHPHHGQQIAHKLRKDGQSVALRSQNEKLTPRK 311
Query: 119 TNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMV 178
TN+YVVDTLGELR+LY + PIAVIGGSF+PGL GHN+SEAAAAGCAV+TG H+GH+S+MV
Sbjct: 312 TNIYVVDTLGELRELYSVAPIAVIGGSFIPGLTGHNLSEAAAAGCAVITGCHVGHFSHMV 371
Query: 179 SAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLL 238
AMQ+ NP SV QVS K EL+EA+ L S+ +LE Q A+K + +LSS I+ N+W LL
Sbjct: 372 KAMQQANPLSVTQVSTKLELKEAVDLLLSNPEILETHQRASKDVYESLSSCIITNIWKLL 431
Query: 239 NFHVFR 244
N H+FR
Sbjct: 432 NLHIFR 437
>TIGR_CMR|SPO_2800 [details] [associations]
symbol:SPO_2800 "3-deoxy-D-manno-octulosonic acid
transferase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009244
"lipopolysaccharide core region biosynthetic process" evidence=ISS]
[GO:0016740 "transferase activity" evidence=ISS] Pfam:PF04413
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016740
HOGENOM:HOG000257156 KO:K02527 OMA:KHGGHNP InterPro:IPR007507
RefSeq:YP_168008.1 ProteinModelPortal:Q5LPP8 GeneID:3195810
KEGG:sil:SPO2800 PATRIC:23379023 ProtClustDB:CLSK759235
Uniprot:Q5LPP8
Length = 432
Score = 290 (107.1 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 62/195 (31%), Positives = 106/195 (54%)
Query: 36 DIGSIEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEI 95
D + +++A++ R VW+ASS H GEE+V+L H+ L+ + + + +++PRHP+ G E+
Sbjct: 227 DTALLAEMRAAIGARPVWVASSTHPGEEEVVLEAHRQLLADHSDRLLLLIPRHPERGAEV 286
Query: 96 AQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI 155
+ + G VA RS E + T VY+ DTLGE Y P+ +GGS L + GHN
Sbjct: 287 SALVTAAGLSVARRSSGESITSGTQVYLADTLGETGTWYAFCPLVFLGGS-LREIGGHNP 345
Query: 156 SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQ 215
E A AG AV+TGP G+++ + + + ++V+ + L +A+ DA +
Sbjct: 346 FEPAQAGAAVITGP--GYFNFAETYLPLIASGGAVEVTTAATLADAVRHWLDDAEAFDTA 403
Query: 216 QMAAKQAFCALSSGI 230
+ A+ A + +
Sbjct: 404 RTQARALVAAQETAL 418
>UNIPROTKB|P0AC75 [details] [associations]
symbol:waaA species:83333 "Escherichia coli K-12"
[GO:0016740 "transferase activity" evidence=IEA;IDA] [GO:0016020
"membrane" evidence=IEA;IDA] [GO:0009245 "lipid A biosynthetic
process" evidence=IMP] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=IEA] [GO:0036104 "Kdo2-lipid A
biosynthetic process" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
UniPathway:UPA00360 InterPro:IPR001296 Pfam:PF00534
UniPathway:UPA00958 Pfam:PF04413 GO:GO:0016021 GO:GO:0005886
GO:GO:0016020 EMBL:U00039 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0016740
GO:GO:0009245 GO:GO:0009244 EMBL:M60670 EMBL:M86305 GO:GO:0036104
eggNOG:COG1519 HOGENOM:HOG000257156 KO:K02527 OMA:KHGGHNP
InterPro:IPR007507 PIR:JU0467 RefSeq:NP_418090.1 RefSeq:YP_491800.1
ProteinModelPortal:P0AC75 SMR:P0AC75 DIP:DIP-48036N IntAct:P0AC75
MINT:MINT-1234738 EnsemblBacteria:EBESCT00000004992
EnsemblBacteria:EBESCT00000004993 EnsemblBacteria:EBESCT00000004994
EnsemblBacteria:EBESCT00000014633 GeneID:12934246 GeneID:949048
KEGG:ecj:Y75_p3541 KEGG:eco:b3633 PATRIC:32122753 EchoBASE:EB0515
EcoGene:EG10520 ProtClustDB:PRK05749 BioCyc:EcoCyc:KDOTRANS-MONOMER
BioCyc:ECOL316407:JW3608-MONOMER BioCyc:MetaCyc:KDOTRANS-MONOMER
Genevestigator:P0AC75 Uniprot:P0AC75
Length = 425
Score = 282 (104.3 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 69/204 (33%), Positives = 110/204 (53%)
Query: 7 RFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA-HRQVWMASSIHRGEEKV 65
RF L A + +G LK+ + + L+ A HR VW+A+S H GEE V
Sbjct: 190 RFVALGAKNNQVTVTGSLKF--DISVTPQLAAKAVTLRRQWAPHRPVWIATSTHEGEESV 247
Query: 66 MLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD 125
++A H+ L+Q+ PNL+ I+VPRHP+ + +++ G RS E T V V D
Sbjct: 248 VIAAHQALLQQFPNLLLILVPRHPERFPDAINLVRQAGLSYITRSSGEVPSTSTQVVVGD 307
Query: 126 TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLN 185
T+GEL LY + +A +GGS + GHN EAAA VL GPH ++ ++ + +++ +
Sbjct: 308 TMGELMLLYGIADLAFVGGSLVER-GGHNPLEAAAHAIPVLMGPHTFNFKDICARLEQAS 366
Query: 186 PKSVLQVSGKSELEEALSQLFSDA 209
++ V+ + L + +S L +DA
Sbjct: 367 --GLITVTDATTLAKEVSSLLTDA 388
>UNIPROTKB|Q9KVB3 [details] [associations]
symbol:VC_0233 "3-deoxy-D-manno-octulosonic-acid
transferase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0009244 "lipopolysaccharide core region biosynthetic
process" evidence=ISS] [GO:0016740 "transferase activity"
evidence=ISS] InterPro:IPR001296 Pfam:PF00534 Pfam:PF04413
GO:GO:0016740 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009244
CAZy:GT30 KO:K02527 InterPro:IPR007507 ProtClustDB:PRK05749
OMA:LPFDLPW PIR:C82349 RefSeq:NP_229890.1 ProteinModelPortal:Q9KVB3
DNASU:2614426 GeneID:2614426 KEGG:vch:VC0233 PATRIC:20079510
Uniprot:Q9KVB3
Length = 439
Score = 267 (99.0 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 71/240 (29%), Positives = 127/240 (52%)
Query: 5 AIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA-HRQVWMASSIHRGEE 63
A RF L + I +G +K+ + + + I E L+ +L HR VW+A+S H+GE+
Sbjct: 202 AQRFIQLGVAETKIKITGSIKF--DINITYEVIAQGEALRTALGKHRPVWIAASTHQGED 259
Query: 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYV 123
+++LA H+ +++++PN + I+VPRHP+ + KL V RS + + T VY+
Sbjct: 260 EIVLAAHQEILKQHPNALLILVPRHPERFAAV-HKLAASLFSVQTRSSQQTITSDTQVYL 318
Query: 124 VDTLGELRQLYKLTPIAVIGGSFL-PGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ 182
DT+GE+ L + + +GGS + + GHN+ E AA ++TGP +++++ A+
Sbjct: 319 GDTMGEMLVLLGASDVCFMGGSLVGKKVGGHNLLEPAALAKPIVTGPSFYNFTDITHAL- 377
Query: 183 RLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSGIVANVWNLLNF 240
+N + + + + ++ FSDA+ E QQ K A + + G + N L F
Sbjct: 378 -INAHACVIADQPETIAKQVNHWFSDAQ--ERQQ-CGKNALAIVMQNRGALENTLTELGF 433
>TIGR_CMR|VC_0233 [details] [associations]
symbol:VC_0233 "3-deoxy-D-manno-octulosonic-acid
transferase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009244 "lipopolysaccharide core region biosynthetic process"
evidence=ISS] [GO:0016740 "transferase activity" evidence=ISS]
InterPro:IPR001296 Pfam:PF00534 Pfam:PF04413 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009244 CAZy:GT30
KO:K02527 InterPro:IPR007507 ProtClustDB:PRK05749 OMA:LPFDLPW
PIR:C82349 RefSeq:NP_229890.1 ProteinModelPortal:Q9KVB3
DNASU:2614426 GeneID:2614426 KEGG:vch:VC0233 PATRIC:20079510
Uniprot:Q9KVB3
Length = 439
Score = 267 (99.0 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 71/240 (29%), Positives = 127/240 (52%)
Query: 5 AIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA-HRQVWMASSIHRGEE 63
A RF L + I +G +K+ + + + I E L+ +L HR VW+A+S H+GE+
Sbjct: 202 AQRFIQLGVAETKIKITGSIKF--DINITYEVIAQGEALRTALGKHRPVWIAASTHQGED 259
Query: 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYV 123
+++LA H+ +++++PN + I+VPRHP+ + KL V RS + + T VY+
Sbjct: 260 EIVLAAHQEILKQHPNALLILVPRHPERFAAV-HKLAASLFSVQTRSSQQTITSDTQVYL 318
Query: 124 VDTLGELRQLYKLTPIAVIGGSFL-PGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ 182
DT+GE+ L + + +GGS + + GHN+ E AA ++TGP +++++ A+
Sbjct: 319 GDTMGEMLVLLGASDVCFMGGSLVGKKVGGHNLLEPAALAKPIVTGPSFYNFTDITHAL- 377
Query: 183 RLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSGIVANVWNLLNF 240
+N + + + + ++ FSDA+ E QQ K A + + G + N L F
Sbjct: 378 -INAHACVIADQPETIAKQVNHWFSDAQ--ERQQ-CGKNALAIVMQNRGALENTLTELGF 433
>TIGR_CMR|CBU_0063 [details] [associations]
symbol:CBU_0063 "3-deoxy-D-manno-octulosonic-acid
transferase" species:227377 "Coxiella burnetii RSA 493" [GO:0009244
"lipopolysaccharide core region biosynthetic process" evidence=ISS]
[GO:0016740 "transferase activity" evidence=ISS] Pfam:PF04413
GO:GO:0016740 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000257156 KO:K02527 OMA:KHGGHNP InterPro:IPR007507
RefSeq:NP_819116.2 ProteinModelPortal:Q83F85 GeneID:1207933
KEGG:cbu:CBU_0063 PATRIC:17928801 ProtClustDB:CLSK913808
BioCyc:CBUR227377:GJ7S-65-MONOMER Uniprot:Q83F85
Length = 435
Score = 235 (87.8 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 64/225 (28%), Positives = 114/225 (50%)
Query: 7 RFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRGEEKVM 66
RF L S + +G++K+ S G + L+ S R MA+S H GEE ++
Sbjct: 201 RFVRLGLSKDRLLVTGNVKFDLHLPTSVIQEG--KSLRKSWGERLTLMAASTHEGEEIIV 258
Query: 67 LAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT 126
L + L + P+ I+ PRHP ++A+ + G + RS + +T++ + DT
Sbjct: 259 LEAFRRLRTEFPDAFLILAPRHPDRFTKVARLCENAGFSIVRRSLQQSPTQKTDILLGDT 318
Query: 127 LGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNP 186
+GEL +LY ++ +A +GGS +P + GHN+ E AA +++GP + ++ + ++R
Sbjct: 319 MGELGRLYAVSDVAFVGGSLVP-VGGHNLIEPAAIRLPIISGPQLQNFVLISELLKRA-- 375
Query: 187 KSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIV 231
+++L V+ L +S+LF A A Q A ++G V
Sbjct: 376 QALLIVNDSESLCHVVSRLFKSPEERSALGERAYQVSAA-NTGAV 419
>UNIPROTKB|Q74AU1 [details] [associations]
symbol:kdtA "CMP-3-deoxy-D-manno-octulosonate--lipid A
tetraacyldisaccharide 3-deoxy-D-manno-octulosonate transferase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0009244
"lipopolysaccharide core region biosynthetic process" evidence=ISS]
[GO:0016740 "transferase activity" evidence=ISS] Pfam:PF04413
GO:GO:0016740 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009244
HOGENOM:HOG000257156 KO:K02527 InterPro:IPR007507
RefSeq:NP_953308.1 ProteinModelPortal:Q74AU1 GeneID:2685728
KEGG:gsu:GSU2259 PATRIC:22027373 OMA:LPFDLPW ProtClustDB:CLSK828781
BioCyc:GSUL243231:GH27-2254-MONOMER Uniprot:Q74AU1
Length = 434
Score = 234 (87.4 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 55/156 (35%), Positives = 87/156 (55%)
Query: 55 ASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEK 114
A S H GEE+V++ + L ++ L ++VPRHP+ E+ LQ +G RS +
Sbjct: 243 AGSTHAGEEEVVVDSYARLARERSGLFLVLVPRHPERAAEVGTMLQGKGIPHVRRSALDG 302
Query: 115 LM-PRTN-VYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIG 172
P V +VDT+GEL LY L+ + +GGS +P + GHN+ E A+ G VL GPH+
Sbjct: 303 APEPAAGGVLLVDTVGELMNLYALSDLVFVGGSLVP-VGGHNLLEPASVGAPVLFGPHMH 361
Query: 173 HYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208
++ + + + N QV ++ LE+AL +L +D
Sbjct: 362 NFREITALVLAANAGE--QVEDRAGLEDALRRLLND 395
>TIGR_CMR|GSU_2259 [details] [associations]
symbol:GSU_2259 "3-deoxy-D-manno-octulosonic-acid
transferase, putative" species:243231 "Geobacter sulfurreducens
PCA" [GO:0009244 "lipopolysaccharide core region biosynthetic
process" evidence=ISS] [GO:0016740 "transferase activity"
evidence=ISS] Pfam:PF04413 GO:GO:0016740 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009244 HOGENOM:HOG000257156
KO:K02527 InterPro:IPR007507 RefSeq:NP_953308.1
ProteinModelPortal:Q74AU1 GeneID:2685728 KEGG:gsu:GSU2259
PATRIC:22027373 OMA:LPFDLPW ProtClustDB:CLSK828781
BioCyc:GSUL243231:GH27-2254-MONOMER Uniprot:Q74AU1
Length = 434
Score = 234 (87.4 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 55/156 (35%), Positives = 87/156 (55%)
Query: 55 ASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEK 114
A S H GEE+V++ + L ++ L ++VPRHP+ E+ LQ +G RS +
Sbjct: 243 AGSTHAGEEEVVVDSYARLARERSGLFLVLVPRHPERAAEVGTMLQGKGIPHVRRSALDG 302
Query: 115 LM-PRTN-VYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIG 172
P V +VDT+GEL LY L+ + +GGS +P + GHN+ E A+ G VL GPH+
Sbjct: 303 APEPAAGGVLLVDTVGELMNLYALSDLVFVGGSLVP-VGGHNLLEPASVGAPVLFGPHMH 361
Query: 173 HYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208
++ + + + N QV ++ LE+AL +L +D
Sbjct: 362 NFREITALVLAANAGE--QVEDRAGLEDALRRLLND 395
>TIGR_CMR|CPS_0118 [details] [associations]
symbol:CPS_0118 "3-deoxy-D-manno-octulosonic-acid
transferase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0009245 "lipid A biosynthetic process" evidence=ISS]
[GO:0016740 "transferase activity" evidence=ISS] InterPro:IPR001296
Pfam:PF00534 Pfam:PF04413 GO:GO:0009058 GO:GO:0016740 EMBL:CP000083
GenomeReviews:CP000083_GR CAZy:GT30 eggNOG:COG1519
HOGENOM:HOG000257156 KO:K02527 OMA:KHGGHNP InterPro:IPR007507
RefSeq:YP_266886.1 ProteinModelPortal:Q48AM7 STRING:Q48AM7
GeneID:3520081 KEGG:cps:CPS_0118 PATRIC:21463651
BioCyc:CPSY167879:GI48-221-MONOMER Uniprot:Q48AM7
Length = 451
Score = 228 (85.3 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 54/204 (26%), Positives = 110/204 (53%)
Query: 21 SGDLKYVHEYDES----EGDIGSIEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQK 76
SG+LK+ +E + ++ + S A R VW+ +S H G+E + L K L+ +
Sbjct: 208 SGNLKFDISVNEQVINKKAELAKLLFADDSQAKRTVWLVASTHEGDEAITLTAFKELLSQ 267
Query: 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL 136
P+L+ ++VPRHP+ +++A + +A RS + ++ V+++D+LGEL + L
Sbjct: 268 YPSLLLVLVPRHPERFEQVANLCLTKQLSLAKRSENT-IINNEQVWLLDSLGELMAAFAL 326
Query: 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKS 196
+ I +GGSF + GHN E A V+ G ++ +++ ++ +++ N ++++++ +
Sbjct: 327 SDIVTMGGSFSE-VGGHNPLEPALFNKPVIVGHNMSNFNEIMQQLRQEN--AIIELTNNT 383
Query: 197 ELEEALSQLFSDARVLEAQQMAAK 220
E+ +QL ++ L Q K
Sbjct: 384 PTNESSAQLVNEVSALLQQPTRQK 407
>TIGR_CMR|SO_4676 [details] [associations]
symbol:SO_4676 "3-deoxy-D-manno-octulosonic-acid (KDO)
transferase" species:211586 "Shewanella oneidensis MR-1"
[GO:0009244 "lipopolysaccharide core region biosynthetic process"
evidence=ISS] [GO:0016740 "transferase activity" evidence=ISS]
Pfam:PF04413 GO:GO:0016740 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000257156 KO:K02527 InterPro:IPR007507 OMA:LPFDLPW
RefSeq:NP_720191.1 ProteinModelPortal:Q8E8I8 GeneID:1172258
KEGG:son:SO_4676 PATRIC:23529017 ProtClustDB:CLSK907763
Uniprot:Q8E8I8
Length = 424
Score = 226 (84.6 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 64/178 (35%), Positives = 87/178 (48%)
Query: 52 VWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR 111
VW+A S+H GE ML+ HK L+ K P + II PRHP+ +A + ++G RS
Sbjct: 233 VWVAGSVHPGEFDAMLSAHKRLLAKWPEALLIIAPRHPEQFAAVADVVARQGFEYVRRSD 292
Query: 112 HEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI 171
+ + T V V DT+GEL Y A +GG+ + GHN E A G V+ GP+
Sbjct: 293 AQAITATTQVLVGDTMGELLTFYGAADQAFVGGTLIEN-GGHNPLEPVAMGVPVMVGPN- 350
Query: 172 GHYSNMVSAMQRLNPKSVLQ-VSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSS 228
H+ + Q L L+ VS EL E L Q F VL QQ AAK + +
Sbjct: 351 -HW-DFAQITQMLADAGGLRIVSSGQELAENLIQYFKQP-VL-CQQ-AAKAGLAVVEA 403
>TIGR_CMR|CJE_0807 [details] [associations]
symbol:CJE_0807 "3-deoxy-D-manno-octulosonic-acid
transferase" species:195099 "Campylobacter jejuni RM1221"
[GO:0009244 "lipopolysaccharide core region biosynthetic process"
evidence=ISS] [GO:0016740 "transferase activity" evidence=ISS]
Pfam:PF04413 GO:GO:0016740 EMBL:CP000025 GenomeReviews:CP000025_GR
CAZy:GT30 eggNOG:COG1519 HOGENOM:HOG000257156 KO:K02527
InterPro:IPR007507 ProtClustDB:PRK05749 RefSeq:YP_178811.1
STRING:Q5HV74 GeneID:3230757 KEGG:cjr:CJE0807 PATRIC:20043359
OMA:RYLPFEI BioCyc:CJEJ195099:GJC0-822-MONOMER Uniprot:Q5HV74
Length = 385
Score = 165 (63.1 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 39/120 (32%), Positives = 68/120 (56%)
Query: 56 SSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEG----EVVALRSR 111
+S H+ EE+++L K +++N L II PRHP+ KE+ L +G + +L+
Sbjct: 214 ASTHKDEEELLLDYFK--LEENEKL--IIAPRHPERFKEVENLLLNKGLEFEKFSSLKDE 269
Query: 112 HEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI 171
++K + + ++D LGEL Y ++ + V+GGSF+ G+ GHN E A +++G I
Sbjct: 270 NKKFAKK--ILLLDALGELVNFYTISDVVVLGGSFIEGIGGHNPIEVAYFDNVLISGKFI 327
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.132 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 248 248 0.00079 114 3 11 22 0.42 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 600 (64 KB)
Total size of DFA: 173 KB (2101 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.88u 0.10s 22.98t Elapsed: 00:00:01
Total cpu time: 22.89u 0.10s 22.99t Elapsed: 00:00:01
Start: Fri May 10 19:38:13 2013 End: Fri May 10 19:38:14 2013