BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043830
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 54 MASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHE 113
+A SIH GE +++L K + + +L I+VPRH ++ K +K + G + E
Sbjct: 200 VAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLE 259
Query: 114 KLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGH 173
+V +VD G L++LY + IA++GG+F+ + GHN+ E G V+ GP+
Sbjct: 260 -----GDVILVDRFGILKELYPVGKIAIVGGTFV-NIGGHNLLEPTCWGIPVIYGPYTHK 313
Query: 174 YSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSS 228
+++ +++ + +V ++EL L++L S + ++ ++ + + C L
Sbjct: 314 VNDLKEFLEKEG--AGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEK 366
>pdb|1EYY|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi
Length = 510
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 131 RQLYKLTPIAVIGGSFLP---GLAGHNISEAAAAGCAVLTGPHIGH 173
RQ L P+AV G S P AG + + A AAGC V+ H H
Sbjct: 132 RQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGHTAH 177
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 93 KEIAQKLQ-KEGEVVALRSRHE---------KLMPRTNVYVVDTL--------GELRQLY 134
K IA+K+Q K G VA + E KLM + ++ L GE +
Sbjct: 849 KAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLII 908
Query: 135 KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168
P A++GG +L G ++S A G L G
Sbjct: 909 SSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 93 KEIAQKLQ-KEGEVVALRSRHE---------KLMPRTNVYVVDTL--------GELRQLY 134
K IA+K+Q K G VA + E KLM + ++ L GE +
Sbjct: 849 KAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLII 908
Query: 135 KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168
P A++GG +L G ++S A G L G
Sbjct: 909 SSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 93 KEIAQKLQ-KEGEVVALRSRHE---------KLMPRTNVYVVDTL--------GELRQLY 134
K IA+K+Q K G VA + E KLM + ++ L GE +
Sbjct: 849 KAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLII 908
Query: 135 KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168
P A++GG +L G ++S A G L G
Sbjct: 909 SSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 93 KEIAQKLQ-KEGEVVALRSRHE---------KLMPRTNVYVVDTL--------GELRQLY 134
K IA+K+Q K G VA + E KLM + ++ L GE +
Sbjct: 850 KAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLII 909
Query: 135 KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168
P A++GG +L G ++S A G L G
Sbjct: 910 SSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 943
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 93 KEIAQKLQ-KEGEVVALRSRHE---------KLMPRTNVYVVDTL--------GELRQLY 134
K IA+K+Q K G VA + E KLM + ++ L GE +
Sbjct: 849 KAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLII 908
Query: 135 KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168
P A++GG +L G ++S A G L G
Sbjct: 909 SSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 93 KEIAQKLQ-KEGEVVALRSRHE---------KLMPRTNVYVVDTL--------GELRQLY 134
K IA+K+Q K G VA + E KLM + ++ L GE +
Sbjct: 849 KAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLII 908
Query: 135 KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168
P A++GG +L G ++S A G L G
Sbjct: 909 SSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942
>pdb|3V4C|A Chain A, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3V4C|B Chain B, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 528
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 129 ELRQLYK-LTPIAVIGGSFLP---GLAGHNISEAAAAGCAVLTGPHIGH 173
E+R + + + P+AV G S P AG + + A AAGC V+ H H
Sbjct: 162 EIRLVQRPVGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVVVKGHSAH 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,615,586
Number of Sequences: 62578
Number of extensions: 238598
Number of successful extensions: 634
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 9
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)