BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043830
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZA5|KDTA_ARATH Probable 3-deoxy-D-manno-octulosonic acid transferase,
mitochondrial OS=Arabidopsis thaliana GN=KDTA PE=2 SV=1
Length = 447
Score = 318 bits (815), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/246 (62%), Positives = 195/246 (79%), Gaps = 2/246 (0%)
Query: 1 STLQAIRFQLLEASPFTINFSGDLKYV-HEYDESEGDIGSIEDLKASLAHRQVWMASSIH 59
STLQ IRFQLL A PF IN+SGDLKYV +++ S G SI DLK LA +VW+ASS+H
Sbjct: 192 STLQGIRFQLLHAPPFVINYSGDLKYVVNKFHVSSGTSESIRDLKVELAEMKVWIASSLH 251
Query: 60 RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPR- 118
RGEE+V+L VH +L++ +P+ V IIVPRHP HG++IA KL+K+G+ VALRS++EKL PR
Sbjct: 252 RGEEEVILGVHNMLLESHPDSVVIIVPRHPHHGQQIAHKLRKDGQSVALRSQNEKLTPRK 311
Query: 119 TNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMV 178
TN+YVVDTLGELR+LY + PIAVIGGSF+PGL GHN+SEAAAAGCAV+TG H+GH+S+MV
Sbjct: 312 TNIYVVDTLGELRELYSVAPIAVIGGSFIPGLTGHNLSEAAAAGCAVITGCHVGHFSHMV 371
Query: 179 SAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLL 238
AMQ+ NP SV QVS K EL+EA+ L S+ +LE Q A+K + +LSS I+ N+W LL
Sbjct: 372 KAMQQANPLSVTQVSTKLELKEAVDLLLSNPEILETHQRASKDVYESLSSCIITNIWKLL 431
Query: 239 NFHVFR 244
N H+FR
Sbjct: 432 NLHIFR 437
>sp|P0AC75|KDTA_ECOLI 3-deoxy-D-manno-octulosonic acid transferase OS=Escherichia coli
(strain K12) GN=waaA PE=1 SV=1
Length = 425
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 109/211 (51%), Gaps = 20/211 (9%)
Query: 7 RFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--------HRQVWMASSI 58
RF L A + +G LK+ DI L A HR VW+A+S
Sbjct: 190 RFVALGAKNNQVTVTGSLKF---------DISVTPQLAAKAVTLRRQWAPHRPVWIATST 240
Query: 59 HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPR 118
H GEE V++A H+ L+Q+ PNL+ I+VPRHP+ + +++ G RS E
Sbjct: 241 HEGEESVVIAAHQALLQQFPNLLLILVPRHPERFPDAINLVRQAGLSYITRSSGEVPSTS 300
Query: 119 TNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMV 178
T V V DT+GEL LY + +A +GGS + GHN EAAA VL GPH ++ ++
Sbjct: 301 TQVVVGDTMGELMLLYGIADLAFVGGSLVER-GGHNPLEAAAHAIPVLMGPHTFNFKDIC 359
Query: 179 SAMQRLNPKSVLQVSGKSELEEALSQLFSDA 209
+ +++ + ++ V+ + L + +S L +DA
Sbjct: 360 ARLEQAS--GLITVTDATTLAKEVSSLLTDA 388
>sp|P0AC76|KDTA_ECOL6 3-deoxy-D-manno-octulosonic acid transferase OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=waaA PE=3
SV=1
Length = 425
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 109/211 (51%), Gaps = 20/211 (9%)
Query: 7 RFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--------HRQVWMASSI 58
RF L A + +G LK+ DI L A HR VW+A+S
Sbjct: 190 RFVALGAKNNQVTVTGSLKF---------DISVTPQLAAKAVTLRRQWAPHRPVWIATST 240
Query: 59 HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPR 118
H GEE V++A H+ L+Q+ PNL+ I+VPRHP+ + +++ G RS E
Sbjct: 241 HEGEESVVIAAHQALLQQFPNLLLILVPRHPERFPDAINLVRQAGLSYITRSSGEVPSTS 300
Query: 119 TNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMV 178
T V V DT+GEL LY + +A +GGS + GHN EAAA VL GPH ++ ++
Sbjct: 301 TQVVVGDTMGELMLLYGIADLAFVGGSLVER-GGHNPLEAAAHAIPVLMGPHTFNFKDIC 359
Query: 179 SAMQRLNPKSVLQVSGKSELEEALSQLFSDA 209
+ +++ + ++ V+ + L + +S L +DA
Sbjct: 360 ARLEQAS--GLITVTDATTLAKEVSSLLTDA 388
>sp|P0AC77|KDTA_ECO57 3-deoxy-D-manno-octulosonic acid transferase OS=Escherichia coli
O157:H7 GN=waaA PE=3 SV=1
Length = 425
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 109/211 (51%), Gaps = 20/211 (9%)
Query: 7 RFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--------HRQVWMASSI 58
RF L A + +G LK+ DI L A HR VW+A+S
Sbjct: 190 RFVALGAKNNQVTVTGSLKF---------DISVTPQLAAKAVTLRRQWAPHRPVWIATST 240
Query: 59 HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPR 118
H GEE V++A H+ L+Q+ PNL+ I+VPRHP+ + +++ G RS E
Sbjct: 241 HEGEESVVIAAHQALLQQFPNLLLILVPRHPERFPDAINLVRQAGLSYITRSSGEVPSTS 300
Query: 119 TNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMV 178
T V V DT+GEL LY + +A +GGS + GHN EAAA VL GPH ++ ++
Sbjct: 301 TQVVVGDTMGELMLLYGIADLAFVGGSLVER-GGHNPLEAAAHAIPVLMGPHTFNFKDIC 359
Query: 179 SAMQRLNPKSVLQVSGKSELEEALSQLFSDA 209
+ +++ + ++ V+ + L + +S L +DA
Sbjct: 360 ARLEQAS--GLITVTDATTLAKEVSSLLTDA 388
>sp|P44806|KDTA_HAEIN 3-deoxy-D-manno-octulosonic acid transferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=waaA PE=1 SV=1
Length = 427
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 7/192 (3%)
Query: 18 INFSGDLKY-VHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQK 76
+N +G++KY ++ DE I S+ L R +W+A+S H GE++++L H+ L+ K
Sbjct: 203 LNITGNIKYDLNTNDELLRKIDSLRTLWKQ--DRPIWIAASTHNGEDEIILKSHRALLAK 260
Query: 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL 136
PNL+ ++VPRHP+ +A L+KE RS +E T V + D++GEL +Y +
Sbjct: 261 YPNLLLLLVPRHPERFNVVADLLKKEKFQFIRRSTNELPNENTQVILGDSMGELMLMYGI 320
Query: 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKS 196
+ IA +GGS + GHN E A V+TG H ++ + + + + VL+V+ +
Sbjct: 321 SDIAFVGGSLVKH-GGHNPLEPLAFKMPVITGKHTFNFPEIFRMLVEV--QGVLEVNSTA 377
Query: 197 E-LEEALSQLFS 207
+ LE A+ L +
Sbjct: 378 DALERAVEALLN 389
>sp|Q4UND5|KDTA_RICFE 3-deoxy-D-manno-octulosonic acid transferase OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=waaA PE=3 SV=1
Length = 464
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Query: 43 LKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKE 102
L + L +RQV + +S H +E+V+L + K L ++ + I++PRHP+ K I +
Sbjct: 268 LSSHLDNRQVVVFASTHPEDEEVILPIIKNLKEQFLDCYIILIPRHPERVKSIIDNCKSH 327
Query: 103 GEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAG 162
+S+++ + ++Y+VD GE+ + + I+ IGGSF G GHNI EAA
Sbjct: 328 NLSATAKSQNDLPVLSDDIYIVDRFGEMGLFFSVATISFIGGSFKQG--GHNILEAAYFS 385
Query: 163 CAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLE 213
++ GP + +++ + L ++ +Q+ +L L+ L S LE
Sbjct: 386 NCIIFGPDMSKNTDIAKGV--LQNEAAIQIKNGEDLLTKLTYLLSPNNSLE 434
>sp|Q92JE9|KDTA_RICCN 3-deoxy-D-manno-octulosonic acid transferase OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=waaA PE=3 SV=1
Length = 464
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 4/167 (2%)
Query: 47 LAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVV 106
L +++V + +S H +E+V+L + K L ++ + I++PRHP+ K I +
Sbjct: 272 LDNKRVVLFASTHPEDEEVILPIIKNLKEQFLDCYIILIPRHPERVKSIIDNCKSHNLSA 331
Query: 107 ALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVL 166
+S+++ + ++Y+VD GE+ + + I+ IGGSF G GHNI EAA ++
Sbjct: 332 TAKSQNDLPVLSDDLYIVDRFGEMGLFFSVATISFIGGSFKQG--GHNILEAAYFSNCII 389
Query: 167 TGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLE 213
GP + +++ + L ++ +Q+ +L L+ L LE
Sbjct: 390 FGPDMSKNTDIAKGV--LQNEAAIQIKNGEDLLTKLTYLLRSNNALE 434
>sp|Q1RGU8|KDTA_RICBR 3-deoxy-D-manno-octulosonic acid transferase OS=Rickettsia bellii
(strain RML369-C) GN=waaA PE=3 SV=1
Length = 418
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 43 LKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKE 102
L L ++QV + +S H +E+++L + K L ++ + I++PRHP+ K I +
Sbjct: 221 LSEHLKNKQVILFASTHPEDEEIILPIIKNLKKQVIDCYIILIPRHPERIKSILDNCIAQ 280
Query: 103 GEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAG 162
+S+++ + ++Y+VD GE+ + + I+ IGGSF G GHNI EAA
Sbjct: 281 DLSATAKSQNDLPVLTDDLYIVDRFGEMGLFFSIASISFIGGSFKQG--GHNILEAAHFS 338
Query: 163 CAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF--SDARVLEAQQ 216
++ GP + +++ + L K+ +Q+ EL L L +++R L+ Q
Sbjct: 339 NCIIFGPDMSKNTDIAKGV--LQSKAAIQIKSGEELLNMLEYLLDPNNSRELKNYQ 392
>sp|Q68XV7|KDTA_RICTY 3-deoxy-D-manno-octulosonic acid transferase OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=waaA PE=3 SV=1
Length = 462
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 40 IEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKL 99
+ L L +R+V + +S H +E+V+L + L ++ + I++PRHP+ K I
Sbjct: 262 LSKLSLHLDNRRVVVFASTHPEDEEVILPIINNLKEQFVDCYIILIPRHPERVKSILNNC 321
Query: 100 QKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAA 159
+ + +S+++ + ++Y+VD GE+ + + I+ IGGSF G GHNI EAA
Sbjct: 322 KCHNLLATAKSQNDLPVLSDDIYIVDRFGEMGLFFSVATISFIGGSFKQG--GHNILEAA 379
Query: 160 AAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQ 215
++ GP + +++ + L + +Q+ +L L L + L+ +
Sbjct: 380 YFSNCIIFGPDMSKNTDIAKGI--LQNNAAIQIKNGEDLLNTLKSLLNANNALKLK 433
>sp|O66663|KDTA_AQUAE 3-deoxy-D-manno-octulosonic acid transferase OS=Aquifex aeolicus
(strain VF5) GN=kdtA PE=1 SV=1
Length = 353
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 54 MASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHE 113
+A SIH GE +++L K + + +L I+VPRH ++ K +K + G + E
Sbjct: 179 VAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLE 238
Query: 114 KLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGH 173
+V +VD G L++LY + IA++GG+F+ + GHN+ E G V+ GP+
Sbjct: 239 -----GDVILVDRFGILKELYPVGKIAIVGGTFV-NIGGHNLLEPTCWGIPVIYGPYTHK 292
Query: 174 YSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSS 228
+++ +++ + +V ++EL L++L S + ++ ++ + + C L
Sbjct: 293 VNDLKEFLEKEG--AGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEK 345
>sp|Q9ZE58|KDTA_RICPR 3-deoxy-D-manno-octulosonic acid transferase OS=Rickettsia
prowazekii (strain Madrid E) GN=waaA PE=3 SV=1
Length = 461
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 47 LAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVV 106
L +R+V + +S H +E+V+L + L ++ + I++PRHP+ K I +
Sbjct: 267 LDNRRVLVFASTHPEDEEVILPIINNLKEQFIDCYIILIPRHPERIKSIINNCKLHHLSA 326
Query: 107 ALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVL 166
+S+++ + ++Y+VD GE+ + + I+ IGGSF G GHNI EAA ++
Sbjct: 327 TAKSQNDLPVLNNDLYIVDRFGEMGLFFSVATISFIGGSFKQG--GHNILEAAYFSNCII 384
Query: 167 TGPHIGHYSNMVSAMQRLN 185
GP + +++ + + N
Sbjct: 385 FGPDMSKNTDIAKGILQNN 403
>sp|F0T4D1|KDTA_CHLP6 3-deoxy-D-manno-octulosonic acid transferase OS=Chlamydophila
psittaci (strain ATCC VR-125 / 6BC) GN=waaA PE=1 SV=1
Length = 433
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 57 SIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLM 116
S+H + +V L V + L + NL + VPRH + KE+ L KE L S+ E
Sbjct: 251 SVHPKDVEVWLPVVRELRR---NLKVLWVPRHIERSKELEALLSKENISYGLWSK-EATF 306
Query: 117 PRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSN 176
+ + +VD +G L+QLY +A +GG+F + GHN+ E G ++ GPHI S+
Sbjct: 307 AQHDAIIVDAIGWLKQLYSAADLAFVGGTFDDRIGGHNLLEPLQCGVPLIFGPHIQSQSD 366
Query: 177 MVSAM 181
+ +
Sbjct: 367 LAERL 371
>sp|Q9PKI5|KDTA_CHLMU 3-deoxy-D-manno-octulosonic acid transferase OS=Chlamydia muridarum
(strain MoPn / Nigg) GN=waaA PE=3 SV=1
Length = 430
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 7 RFQLLEASPFTINFSGDLKYVHEYDESEGDIGSI----EDLKASLAHRQVWMASSIHRGE 62
RF + I SG+LK + E+E I + + LK S + R + + S+H +
Sbjct: 197 RFMQIGIPEDKIQISGNLK---TFIETETSINNRSLWRKKLKLSPSDRLI-VLGSMHPKD 252
Query: 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVY 122
+V V + + + + + VPRH + KE A+ L+K G L S+ + L+ + +
Sbjct: 253 VEVWADVAQHFNKFSTKI--LWVPRHLEKLKEHARLLEKAGISFGLWSKEDSLL-QYDSL 309
Query: 123 VVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ 182
+VD +G L+ LY +A +GG+F P + GHN+ E ++ GPHI H ++++ +
Sbjct: 310 IVDAMGILKDLYSAADLAFVGGTFDPLVGGHNLLEPLQKEVPLMFGPHI-HSQSVLAEL- 367
Query: 183 RLNPKSVLQVSGKSELEEALSQLFSDARVLEA 214
L K V K L EA+ L D + +A
Sbjct: 368 -LRTKEVGVSVDKENLLEAVENLLEDEKKRQA 398
>sp|Q8R6G8|TRMB_FUSNN Bifunctional glycosyltransferase/methyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=trmB PE=3 SV=1
Length = 640
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 46 SLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEV 105
++ R+V++A S GE++++L V K L N V IIVPRH +I + L KE +
Sbjct: 221 NIGDRKVFVAGSTRTGEDEIILDVFKRL----KNYVLIIVPRHLDRLPKI-ENLIKENNL 275
Query: 106 VALRS---RHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAG 162
++ + + N+ +VD +G LR+LY ++ IA +GG+ L + GHN+ E
Sbjct: 276 TYVKYSDLENNTSTGKENIILVDKMGVLRKLYSISDIAFVGGT-LVNIGGHNLLEPLFYR 334
Query: 163 CAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQL 205
V+ G + + ++ A + L K QV E +A+ +
Sbjct: 335 KTVIFGKYTQNVVDI--AKEILRRKIGFQVENVEEFVKAIETI 375
>sp|Q45374|KDTA_BORPT 3-deoxy-D-manno-octulosonic acid transferase OS=Bordetella
pertussis GN=waaA PE=1 SV=1
Length = 428
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Query: 9 QLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRGEEKVMLA 68
+L +A +G LK+ E++ +G A R V +S GE+ + +
Sbjct: 197 RLCQAGANAYTVTGSLKFDVALPEAQLRVGHA---WAGATGRPVIALASTREGEDAMFIE 253
Query: 69 VHKVLMQ---KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHE-KLMPRTNVYVV 124
L P + +++PRHPQ E A +LQ G A RS + P +V +
Sbjct: 254 AIGALQAHRAATPRPLILLIPRHPQRFDEAAAQLQAAGLAYARRSAGSGEPGPHIDVLLG 313
Query: 125 DTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSN 176
DTLGE+ Y +A++GGSF L G N+ EA AAG V+ GPH ++ +
Sbjct: 314 DTLGEMPFYYAAADVAIVGGSFAR-LGGQNLIEACAAGTPVIVGPHTFNFKD 364
>sp|B0B9V8|KDTA_CHLT2 3-deoxy-D-manno-octulosonic acid transferase OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=waaA PE=1 SV=1
Length = 431
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL 136
N + + VPRH + KE A+ L+K G + L S+ + N ++D +G L+ +Y
Sbjct: 266 NSSTKILWVPRHLEKLKEHAKLLEKAGILFGLWSQGASFR-QYNSLIMDAMGVLKDIYSA 324
Query: 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKS 196
IA +GG+F P + GHN+ E ++ GP+I YS V A +RL K K
Sbjct: 325 ADIAFVGGTFDPSVGGHNLLEPLQKEAPLMFGPYI--YSQSVLA-ERLREKEAGLSVNKE 381
Query: 197 ELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLN 239
L + ++ L + + +A + ++F W +L
Sbjct: 382 TLLDVVTDLLQNEKNRQA-YIEKGKSFLKQEENSFQQTWEILK 423
>sp|P0CE14|KDTA_CHLTR 3-deoxy-D-manno-octulosonic acid transferase OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=waaA PE=3 SV=1
Length = 431
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL 136
N + + VPRH + KE A+ L+K G + L S+ + N ++D +G L+ +Y
Sbjct: 266 NSSTKILWVPRHLEKLKEHAKLLEKAGILFGLWSQGASFR-QYNSLIMDAMGVLKDIYSA 324
Query: 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKS 196
IA +GG+F P + GHN+ E ++ GP+I YS V A + ++ L V+ ++
Sbjct: 325 ADIAFVGGTFDPSVGGHNLLEPLQKEVPLMFGPYI--YSQSVLAEKLREKEAGLSVNKET 382
Query: 197 ELE 199
L+
Sbjct: 383 LLD 385
>sp|Q3KMF4|KDTA_CHLTA 3-deoxy-D-manno-octulosonic acid transferase OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=waaA PE=3 SV=1
Length = 431
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL 136
N + + VPRH + KE A+ L+K G + L S+ + N ++D +G L+ +Y
Sbjct: 266 NSSTKILWVPRHLEKLKEHAKLLEKAGILFGLWSQGASFR-QYNSLIMDAMGVLKDIYSA 324
Query: 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKS 196
IA +GG+F P + GHN+ E ++ GP+I YS V A + ++ L V+ ++
Sbjct: 325 ADIAFVGGTFDPSVGGHNLLEPLQKEVPLMFGPYI--YSQSVLAEKLREKEAGLSVNKET 382
Query: 197 ELE 199
L+
Sbjct: 383 LLD 385
>sp|Q46222|KDTA_CHLPN 3-deoxy-D-manno-octulosonic acid transferase OS=Chlamydia
pneumoniae GN=waaA PE=1 SV=3
Length = 437
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 6/189 (3%)
Query: 54 MASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHE 113
+ S+HR + L V + L+++ ++ + VPRH + K++ + L + L SR
Sbjct: 249 ILGSMHRSDAGKWLPVVQKLIKEGVSV--LWVPRHVEKTKDVEESLHRLHIPYGLWSRGA 306
Query: 114 KLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGH 173
V VVD +G L+QLY +A +GG+F P + GHN+ E ++ GPHI
Sbjct: 307 NF-SYVPVVVVDEIGLLKQLYVAGDLAFVGGTFDPKIGGHNLLEPLQCEVPLIFGPHITS 365
Query: 174 YSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVAN 233
S + A + L + L + + + +S L ++ V EA K F +
Sbjct: 366 QSEL--AQRLLLSGAGLCLDEIEPIIDTVSFLLNNQEVREAYVQKGK-VFVKAETASFDR 422
Query: 234 VWNLLNFHV 242
W L ++
Sbjct: 423 TWRALKSYI 431
>sp|Q56694|ALDH_VIBHA NADP-dependent fatty aldehyde dehydrogenase OS=Vibrio harveyi
GN=aldH PE=1 SV=1
Length = 510
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 131 RQLYKLTPIAVIGGSFLP---GLAGHNISEAAAAGCAVLTGPHIGH 173
RQ L P+AV G S P AG + + A AAGC V+ H H
Sbjct: 132 RQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGHTAH 177
>sp|Q62315|JARD2_MOUSE Protein Jumonji OS=Mus musculus GN=Jarid2 PE=1 SV=1
Length = 1234
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 161 AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAK 220
G + TGP ++ + A RLNPKS + G +L E L S R+ EAQQ+
Sbjct: 394 GGASKSTGP----AASGLKASSRLNPKSCTKEVGGRQLREGLRN--SKRRLEEAQQVDKP 447
Query: 221 QAFCALSSGIVANV 234
Q+ G+ N
Sbjct: 448 QSPPKKMKGVAGNA 461
>sp|A5IY09|SYI_MYCAP Isoleucine--tRNA ligase OS=Mycoplasma agalactiae (strain PG2)
GN=ileS PE=3 SV=1
Length = 892
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESE 34
S ++ I ++E S F +N + D+ YVHE+D +E
Sbjct: 697 SVIKTINKYVVELSSFYLNITKDILYVHEFDSNE 730
>sp|Q5QWZ9|ASSY_IDILO Argininosuccinate synthase OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=argG PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 177 MVSAMQRLNPKSVLQVS--GKSELEEALSQLFSDARVLEAQQ---MAAKQAFCALSSGIV 231
M++A+Q ++ + +VS K++L E +QL D R Q MAA Q+ CA +SG V
Sbjct: 283 MMAALQAIDELVLDKVSRSWKTQLSEQFAQLLYDGRWFTPLQQSVMAAAQSLCATASGEV 342
>sp|Q2P0Z3|UVRB_XANOM UvrABC system protein B OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=uvrB PE=3 SV=1
Length = 673
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 195 KSELEEALSQLFSDARVLEAQQMAAKQAF 223
K EL+E L QL+S ++++EAQ++A + F
Sbjct: 264 KEELKERLEQLYSQSKLVEAQRLAQRTQF 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,359,437
Number of Sequences: 539616
Number of extensions: 3148370
Number of successful extensions: 10748
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10705
Number of HSP's gapped (non-prelim): 29
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)