Query 043830
Match_columns 248
No_of_seqs 164 out of 1381
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1519 KdtA 3-deoxy-D-manno-o 100.0 1.5E-39 3.3E-44 278.0 26.9 234 1-242 185-419 (419)
2 PRK05749 3-deoxy-D-manno-octul 100.0 1.2E-35 2.5E-40 265.1 28.7 238 1-245 186-424 (425)
3 PRK15427 colanic acid biosynth 100.0 3.2E-27 6.9E-32 209.5 19.4 212 1-240 182-405 (406)
4 TIGR03088 stp2 sugar transfera 100.0 3.5E-26 7.5E-31 200.4 22.9 218 1-242 144-374 (374)
5 PRK10307 putative glycosyl tra 99.9 6E-25 1.3E-29 195.3 24.8 220 1-245 179-412 (412)
6 PRK15490 Vi polysaccharide bio 99.9 1.2E-25 2.6E-30 201.3 20.2 219 1-240 346-575 (578)
7 PLN02871 UDP-sulfoquinovose:DA 99.9 2.7E-25 5.8E-30 200.6 22.0 213 1-243 213-437 (465)
8 TIGR03449 mycothiol_MshA UDP-N 99.9 7.6E-25 1.6E-29 193.9 23.2 218 1-243 171-404 (405)
9 cd03813 GT1_like_3 This family 99.9 3.3E-25 7.1E-30 200.4 20.2 213 1-239 252-475 (475)
10 PRK15179 Vi polysaccharide bio 99.9 4.6E-25 9.9E-30 204.8 19.7 218 1-239 466-692 (694)
11 PRK15484 lipopolysaccharide 1, 99.9 7.3E-24 1.6E-28 186.6 24.6 213 1-242 147-379 (380)
12 TIGR02918 accessory Sec system 99.9 3.8E-24 8.3E-29 193.6 22.7 207 1-240 278-499 (500)
13 cd04962 GT1_like_5 This family 99.9 9E-24 1.9E-28 184.3 23.2 213 1-240 150-370 (371)
14 TIGR02472 sucr_P_syn_N sucrose 99.9 9.5E-24 2.1E-28 189.2 21.7 206 12-238 205-438 (439)
15 cd03796 GT1_PIG-A_like This fa 99.9 1.7E-23 3.6E-28 185.3 20.3 216 1-248 152-375 (398)
16 cd05844 GT1_like_7 Glycosyltra 99.9 1.2E-23 2.6E-28 183.3 19.0 203 1-235 150-365 (367)
17 TIGR02468 sucrsPsyn_pln sucros 99.9 2.1E-23 4.5E-28 198.0 21.9 175 49-243 478-673 (1050)
18 cd04951 GT1_WbdM_like This fam 99.9 3.3E-23 7.2E-28 179.4 21.3 212 1-239 138-359 (360)
19 cd03807 GT1_WbnK_like This fam 99.9 8.9E-23 1.9E-27 175.4 23.5 212 1-238 144-364 (365)
20 cd03792 GT1_Trehalose_phosphor 99.9 4.3E-23 9.4E-28 181.0 21.6 210 8-240 146-371 (372)
21 cd03816 GT1_ALG1_like This fam 99.9 5.4E-23 1.2E-27 183.1 22.3 214 1-235 168-411 (415)
22 TIGR02149 glgA_Coryne glycogen 99.9 2E-22 4.3E-27 177.2 23.5 215 1-242 152-388 (388)
23 PLN02949 transferase, transfer 99.9 4.2E-23 9.1E-28 185.2 19.5 218 1-245 228-461 (463)
24 PRK09922 UDP-D-galactose:(gluc 99.9 6E-23 1.3E-27 179.4 19.7 210 1-243 141-358 (359)
25 PRK14099 glycogen synthase; Pr 99.9 9.9E-23 2.1E-27 184.2 19.1 223 1-246 217-484 (485)
26 cd03819 GT1_WavL_like This fam 99.9 5.1E-22 1.1E-26 172.0 21.9 206 1-226 132-349 (355)
27 PRK00654 glgA glycogen synthas 99.9 2.3E-22 4.9E-27 181.5 19.2 221 1-243 205-465 (466)
28 cd03818 GT1_ExpC_like This fam 99.9 2E-22 4.4E-27 178.2 18.5 213 1-235 164-395 (396)
29 TIGR02470 sucr_synth sucrose s 99.9 6.1E-22 1.3E-26 184.5 22.3 175 49-239 549-746 (784)
30 cd03812 GT1_CapH_like This fam 99.9 2.7E-22 5.8E-27 173.9 17.8 197 1-224 145-347 (358)
31 cd03820 GT1_amsD_like This fam 99.9 7.7E-22 1.7E-26 168.3 20.3 193 10-234 150-346 (348)
32 PLN02939 transferase, transfer 99.9 8.1E-22 1.8E-26 184.9 21.2 214 11-245 720-971 (977)
33 PHA01630 putative group 1 glyc 99.9 1.3E-21 2.9E-26 168.8 20.8 202 1-240 102-330 (331)
34 PLN02316 synthase/transferase 99.9 1.6E-21 3.4E-26 185.6 22.9 226 1-243 769-1036(1036)
35 cd04949 GT1_gtfA_like This fam 99.9 1.5E-21 3.3E-26 170.8 20.1 202 1-232 165-370 (372)
36 cd03800 GT1_Sucrose_synthase T 99.9 4E-21 8.7E-26 168.9 22.6 211 1-235 171-397 (398)
37 cd04946 GT1_AmsK_like This fam 99.9 3.4E-21 7.4E-26 171.1 21.3 195 1-226 191-395 (407)
38 cd03822 GT1_ecORF704_like This 99.9 6.4E-21 1.4E-25 164.9 21.4 199 15-238 155-365 (366)
39 PLN02605 monogalactosyldiacylg 99.9 5.2E-21 1.1E-25 168.6 21.1 213 1-245 158-382 (382)
40 TIGR03087 stp1 sugar transfera 99.9 4E-21 8.7E-26 170.1 20.5 203 1-238 180-394 (397)
41 cd03805 GT1_ALG2_like This fam 99.9 3.6E-21 7.9E-26 169.4 19.9 209 1-232 162-390 (392)
42 PRK14098 glycogen synthase; Pr 99.9 2.9E-21 6.2E-26 174.9 18.4 219 1-243 228-488 (489)
43 cd03809 GT1_mtfB_like This fam 99.9 4.4E-21 9.5E-26 165.8 18.1 211 1-235 148-364 (365)
44 TIGR02095 glgA glycogen/starch 99.9 4.7E-21 1E-25 173.3 18.5 217 1-241 213-473 (473)
45 cd03825 GT1_wcfI_like This fam 99.9 1.6E-20 3.5E-25 162.9 21.0 208 1-241 143-365 (365)
46 PHA01633 putative glycosyl tra 99.9 1.7E-20 3.6E-25 161.0 19.1 202 1-234 100-333 (335)
47 PLN00142 sucrose synthase 99.9 1.5E-20 3.3E-25 175.3 20.4 178 49-239 572-769 (815)
48 cd03821 GT1_Bme6_like This fam 99.9 7.6E-20 1.6E-24 157.8 22.9 198 11-235 166-374 (375)
49 cd03799 GT1_amsK_like This is 99.9 2.4E-20 5.1E-25 161.3 19.5 196 1-226 138-345 (355)
50 cd03823 GT1_ExpE7_like This fa 99.9 7.5E-20 1.6E-24 157.4 22.2 203 1-239 151-358 (359)
51 cd03814 GT1_like_2 This family 99.9 3.7E-20 8.1E-25 159.8 20.3 204 1-238 152-363 (364)
52 cd03808 GT1_cap1E_like This fa 99.9 7.4E-20 1.6E-24 156.7 21.6 203 1-233 146-356 (359)
53 cd03817 GT1_UGDG_like This fam 99.9 9.7E-20 2.1E-24 157.2 22.4 209 1-239 156-372 (374)
54 PF00534 Glycos_transf_1: Glyc 99.9 1.4E-20 3.1E-25 147.3 15.5 154 49-222 14-172 (172)
55 cd03801 GT1_YqgM_like This fam 99.9 1.2E-19 2.7E-24 155.3 21.4 211 1-238 152-373 (374)
56 cd03806 GT1_ALG11_like This fa 99.9 3E-20 6.5E-25 165.6 17.7 199 1-226 197-411 (419)
57 PRK13609 diacylglycerol glucos 99.8 1.3E-19 2.7E-24 159.6 20.5 206 1-241 155-368 (380)
58 cd03795 GT1_like_4 This family 99.8 1.7E-19 3.8E-24 156.0 20.3 199 1-226 145-350 (357)
59 PRK13608 diacylglycerol glucos 99.8 2.2E-19 4.8E-24 158.7 20.3 211 1-243 155-374 (391)
60 cd03798 GT1_wlbH_like This fam 99.8 6.1E-19 1.3E-23 151.6 22.3 213 1-240 156-376 (377)
61 cd03811 GT1_WabH_like This fam 99.8 3.1E-19 6.7E-24 152.3 19.6 199 1-225 143-349 (353)
62 cd03794 GT1_wbuB_like This fam 99.8 4.5E-19 9.7E-24 153.6 20.1 207 1-233 173-392 (394)
63 PLN02846 digalactosyldiacylgly 99.8 9.7E-20 2.1E-24 162.1 16.0 159 51-239 229-390 (462)
64 PRK00025 lpxB lipid-A-disaccha 99.8 9.3E-19 2E-23 153.9 21.4 214 1-246 142-379 (380)
65 cd04955 GT1_like_6 This family 99.8 4.5E-19 9.7E-24 153.9 19.0 202 1-239 151-363 (363)
66 TIGR02400 trehalose_OtsA alpha 99.8 1.6E-18 3.4E-23 155.4 20.4 207 15-237 221-453 (456)
67 cd03791 GT1_Glycogen_synthase_ 99.8 4.4E-19 9.6E-24 160.5 16.9 203 13-239 240-475 (476)
68 PRK10125 putative glycosyl tra 99.8 5.1E-19 1.1E-23 156.9 16.0 197 1-241 198-405 (405)
69 PLN02501 digalactosyldiacylgly 99.8 3.4E-19 7.4E-24 162.1 15.1 149 59-237 557-706 (794)
70 cd03788 GT1_TPS Trehalose-6-Ph 99.8 7.8E-19 1.7E-23 158.1 15.3 203 16-236 227-457 (460)
71 KOG1111 N-acetylglucosaminyltr 99.8 6.5E-19 1.4E-23 147.5 13.0 196 11-245 164-371 (426)
72 PLN02275 transferase, transfer 99.8 2.6E-18 5.6E-23 150.9 17.1 177 1-206 173-371 (371)
73 TIGR00236 wecB UDP-N-acetylglu 99.8 3.6E-18 7.9E-23 149.5 17.8 209 1-241 149-364 (365)
74 cd03793 GT1_Glycogen_synthase_ 99.8 7.8E-17 1.7E-21 145.0 20.6 111 129-243 467-589 (590)
75 PLN03063 alpha,alpha-trehalose 99.8 1.9E-17 4.1E-22 157.1 17.2 187 42-242 271-479 (797)
76 cd03804 GT1_wbaZ_like This fam 99.7 2.3E-17 5E-22 143.3 14.4 175 1-222 161-341 (351)
77 PRK00726 murG undecaprenyldiph 99.7 1.3E-16 2.8E-21 139.2 19.1 194 13-242 151-355 (357)
78 cd03785 GT1_MurG MurG is an N- 99.7 6.2E-16 1.4E-20 134.2 19.3 187 13-236 149-349 (350)
79 cd03802 GT1_AviGT4_like This f 99.7 7.6E-16 1.7E-20 132.3 17.0 177 16-239 150-335 (335)
80 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 4.6E-16 9.9E-21 135.8 14.8 201 1-238 149-362 (363)
81 PRK14501 putative bifunctional 99.7 1.6E-15 3.5E-20 143.6 18.2 188 41-243 256-465 (726)
82 TIGR01133 murG undecaprenyldip 99.7 3.2E-15 6.9E-20 129.7 17.9 160 49-236 178-346 (348)
83 KOG0853 Glycosyltransferase [C 99.6 1.2E-15 2.7E-20 134.8 11.7 167 60-245 285-472 (495)
84 cd04950 GT1_like_1 Glycosyltra 99.6 3E-14 6.6E-19 125.2 18.1 200 1-240 161-371 (373)
85 COG0438 RfaG Glycosyltransfera 99.5 2.5E-12 5.4E-17 108.8 19.5 174 51-243 200-379 (381)
86 PF13692 Glyco_trans_1_4: Glyc 99.5 5.6E-14 1.2E-18 105.5 8.2 129 52-208 4-135 (135)
87 TIGR02398 gluc_glyc_Psyn gluco 99.5 3E-12 6.6E-17 115.0 20.3 172 40-226 275-467 (487)
88 TIGR00215 lpxB lipid-A-disacch 99.5 4.5E-12 9.8E-17 111.9 20.9 209 2-239 147-383 (385)
89 PLN03064 alpha,alpha-trehalose 99.4 6.8E-12 1.5E-16 119.7 18.0 185 40-241 353-562 (934)
90 TIGR03492 conserved hypothetic 99.4 4.6E-11 1E-15 105.8 21.4 215 2-241 169-395 (396)
91 PRK09814 beta-1,6-galactofuran 99.4 4.6E-11 9.9E-16 103.6 18.9 174 1-226 131-316 (333)
92 COG0707 MurG UDP-N-acetylgluco 99.4 1.9E-10 4.1E-15 100.0 21.6 198 10-242 148-355 (357)
93 TIGR03713 acc_sec_asp1 accesso 99.3 2.7E-10 5.8E-15 103.8 16.1 159 57-227 329-507 (519)
94 COG0297 GlgA Glycogen synthase 99.2 2.6E-10 5.6E-15 102.3 15.5 183 40-244 279-481 (487)
95 cd01635 Glycosyltransferase_GT 99.2 4.9E-11 1.1E-15 96.1 9.9 96 60-171 116-214 (229)
96 COG0381 WecB UDP-N-acetylgluco 99.2 6.4E-10 1.4E-14 95.6 16.8 211 1-243 153-373 (383)
97 COG0763 LpxB Lipid A disacchar 99.2 2.8E-09 6.1E-14 91.5 16.4 210 3-243 146-380 (381)
98 PF13524 Glyco_trans_1_2: Glyc 99.1 4.4E-10 9.4E-15 78.9 9.2 86 143-235 4-91 (92)
99 PF02684 LpxB: Lipid-A-disacch 99.1 5.1E-09 1.1E-13 91.4 17.5 189 3-223 143-355 (373)
100 PF02350 Epimerase_2: UDP-N-ac 99.0 2.4E-09 5.3E-14 93.1 12.0 204 1-239 130-346 (346)
101 TIGR03568 NeuC_NnaA UDP-N-acet 99.0 1.9E-08 4E-13 88.3 16.9 198 1-237 152-364 (365)
102 TIGR02919 accessory Sec system 99.0 4.6E-09 9.9E-14 93.8 12.0 134 64-222 291-425 (438)
103 KOG2941 Beta-1,4-mannosyltrans 99.0 5.5E-08 1.2E-12 82.1 16.2 169 49-236 253-437 (444)
104 PRK12446 undecaprenyldiphospho 99.0 2.1E-07 4.5E-12 81.3 20.6 100 128-239 244-350 (352)
105 PF13844 Glyco_transf_41: Glyc 98.9 1.3E-07 2.8E-12 84.4 17.6 152 58-226 293-448 (468)
106 TIGR01426 MGT glycosyltransfer 98.8 4.3E-07 9.4E-12 80.4 17.9 113 120-242 276-390 (392)
107 KOG1387 Glycosyltransferase [C 98.8 2.1E-07 4.6E-12 78.6 13.0 177 51-243 270-461 (465)
108 PRK01021 lpxB lipid-A-disaccha 98.8 1.8E-06 3.8E-11 79.1 19.9 189 3-226 371-589 (608)
109 PRK10117 trehalose-6-phosphate 98.6 2.3E-06 4.9E-11 76.8 16.3 188 40-240 245-453 (474)
110 cd03784 GT1_Gtf_like This fami 98.5 7.7E-06 1.7E-10 72.5 17.4 109 120-239 289-399 (401)
111 PF04464 Glyphos_transf: CDP-G 98.5 2E-06 4.3E-11 75.6 12.0 208 1-239 142-368 (369)
112 PF04101 Glyco_tran_28_C: Glyc 98.4 1.6E-07 3.5E-12 73.1 3.4 94 120-219 56-155 (167)
113 PF00982 Glyco_transf_20: Glyc 98.3 7.7E-06 1.7E-10 74.0 12.2 173 39-226 264-459 (474)
114 PLN02205 alpha,alpha-trehalose 98.3 4.1E-05 8.8E-10 73.9 16.6 170 40-226 327-536 (854)
115 TIGR03590 PseG pseudaminic aci 98.3 1.1E-05 2.3E-10 68.4 10.6 94 52-171 173-269 (279)
116 COG3914 Spy Predicted O-linked 98.2 8.9E-05 1.9E-09 66.9 16.4 149 58-224 438-593 (620)
117 COG1819 Glycosyl transferases, 98.2 0.0002 4.3E-09 63.8 18.4 114 120-244 285-401 (406)
118 PHA03392 egt ecdysteroid UDP-g 98.2 0.00073 1.6E-08 62.0 21.4 116 120-243 347-466 (507)
119 PRK14089 ipid-A-disaccharide s 98.1 0.00011 2.3E-09 64.0 13.6 178 17-240 145-346 (347)
120 TIGR02094 more_P_ylases alpha- 97.9 0.00045 9.8E-09 64.4 15.2 175 49-238 388-598 (601)
121 COG3980 spsG Spore coat polysa 97.9 0.00031 6.6E-09 58.3 12.2 142 52-221 161-306 (318)
122 COG0380 OtsA Trehalose-6-phosp 97.9 0.0011 2.4E-08 59.7 16.2 170 40-225 271-463 (486)
123 PF13528 Glyco_trans_1_3: Glyc 97.8 0.00043 9.2E-09 59.3 12.7 80 119-205 232-317 (318)
124 PF05693 Glycogen_syn: Glycoge 97.8 6.5E-05 1.4E-09 68.6 6.8 112 129-243 462-584 (633)
125 PLN00164 glucosyltransferase; 97.6 0.0076 1.6E-07 55.0 18.2 111 131-246 350-475 (480)
126 PRK10017 colanic acid biosynth 97.6 0.047 1E-06 49.0 22.1 185 3-212 186-396 (426)
127 PF04007 DUF354: Protein of un 97.6 0.0072 1.6E-07 52.4 16.0 68 129-206 241-308 (335)
128 TIGR00661 MJ1255 conserved hyp 97.5 0.0023 4.9E-08 55.2 12.9 83 120-209 230-315 (321)
129 PLN02764 glycosyltransferase f 97.5 0.012 2.5E-07 53.3 17.5 74 151-225 344-425 (453)
130 PLN02448 UDP-glycosyltransfera 97.5 0.0012 2.6E-08 59.9 11.3 104 131-239 334-452 (459)
131 PLN02670 transferase, transfer 97.4 0.0012 2.6E-08 59.9 9.7 108 132-245 351-470 (472)
132 PLN02562 UDP-glycosyltransfera 97.4 0.0028 6.1E-08 57.3 11.7 105 131-240 339-445 (448)
133 cd04299 GT1_Glycogen_Phosphory 97.4 0.012 2.7E-07 56.3 16.2 173 51-239 479-688 (778)
134 PLN03007 UDP-glucosyltransfera 97.2 0.052 1.1E-06 49.6 18.4 74 131-209 356-441 (482)
135 COG4370 Uncharacterized protei 97.2 0.0031 6.8E-08 53.0 9.4 208 4-241 189-410 (412)
136 PLN00414 glycosyltransferase f 97.2 0.06 1.3E-06 48.7 18.2 91 131-226 323-421 (446)
137 PLN02208 glycosyltransferase f 97.2 0.0034 7.4E-08 56.6 10.2 101 132-238 323-433 (442)
138 PLN02863 UDP-glucoronosyl/UDP- 97.1 0.084 1.8E-06 48.2 18.4 76 131-212 354-438 (477)
139 PLN02210 UDP-glucosyl transfer 97.1 0.0082 1.8E-07 54.4 11.6 100 131-238 335-449 (456)
140 COG4641 Uncharacterized protei 97.1 0.006 1.3E-07 52.8 9.9 93 128-226 249-345 (373)
141 PLN02410 UDP-glucoronosyl/UDP- 97.0 0.0043 9.3E-08 56.1 9.4 86 131-222 335-423 (451)
142 PLN02173 UDP-glucosyl transfer 97.0 0.0071 1.5E-07 54.6 10.0 86 131-222 328-421 (449)
143 PLN02992 coniferyl-alcohol glu 96.9 0.012 2.6E-07 53.6 11.4 108 131-243 349-472 (481)
144 PF00201 UDPGT: UDP-glucoronos 96.9 0.0027 5.8E-08 58.1 7.0 82 132-218 335-419 (500)
145 PLN03004 UDP-glycosyltransfera 96.9 0.0068 1.5E-07 54.8 9.2 78 131-213 345-429 (451)
146 COG1887 TagB Putative glycosyl 96.9 0.11 2.4E-06 46.1 16.6 204 9-240 165-386 (388)
147 PLN02167 UDP-glycosyltransfera 96.8 0.014 3.1E-07 53.1 10.6 74 131-209 351-435 (475)
148 PLN02152 indole-3-acetate beta 96.7 0.016 3.4E-07 52.5 10.1 82 131-219 338-426 (455)
149 PLN02554 UDP-glycosyltransfera 96.6 0.027 5.9E-07 51.4 10.9 64 152-215 370-448 (481)
150 COG4671 Predicted glycosyl tra 96.5 0.2 4.3E-06 43.4 14.6 84 119-209 277-366 (400)
151 PF05159 Capsule_synth: Capsul 96.5 0.011 2.5E-07 49.5 7.4 83 63-167 139-223 (269)
152 PLN02207 UDP-glycosyltransfera 96.3 0.044 9.4E-07 49.8 10.6 56 152-207 360-425 (468)
153 PLN02555 limonoid glucosyltran 96.2 0.039 8.4E-07 50.3 9.7 72 151-223 364-443 (480)
154 KOG4626 O-linked N-acetylgluco 96.1 0.12 2.5E-06 47.9 11.8 142 64-223 773-919 (966)
155 PLN02534 UDP-glycosyltransfera 95.6 0.19 4.1E-06 46.1 11.3 86 131-221 355-458 (491)
156 PLN03015 UDP-glucosyl transfer 95.4 0.13 2.8E-06 46.8 9.6 72 151-222 362-441 (470)
157 KOG3349 Predicted glycosyltran 95.3 0.37 8.1E-06 36.6 10.1 70 125-203 69-142 (170)
158 PF10087 DUF2325: Uncharacteri 95.0 0.44 9.6E-06 33.4 9.4 75 82-170 2-83 (97)
159 PF06258 Mito_fiss_Elm1: Mitoc 94.8 1.7 3.7E-05 37.4 14.3 111 64-195 168-283 (311)
160 PRK02797 4-alpha-L-fucosyltran 94.4 1 2.2E-05 38.5 11.6 114 51-185 147-269 (322)
161 COG1817 Uncharacterized protei 93.5 1.7 3.7E-05 37.2 11.2 69 132-210 248-316 (346)
162 TIGR03609 S_layer_CsaB polysac 93.3 3.1 6.7E-05 35.3 13.1 133 3-167 137-274 (298)
163 KOG1192 UDP-glucuronosyl and U 92.2 0.84 1.8E-05 41.6 8.6 69 151-220 362-434 (496)
164 KOG2884 26S proteasome regulat 92.0 2.7 5.8E-05 33.9 9.8 55 155-213 178-234 (259)
165 KOG3742 Glycogen synthase [Car 91.6 1.1 2.4E-05 40.1 8.0 44 129-175 493-536 (692)
166 KOG3111 D-ribulose-5-phosphate 91.0 6.5 0.00014 31.2 10.9 99 92-203 101-214 (224)
167 cd03789 GT1_LPS_heptosyltransf 88.9 1.9 4.1E-05 36.1 7.3 82 63-167 139-222 (279)
168 cd05312 NAD_bind_1_malic_enz N 88.3 1.9 4.2E-05 36.4 6.7 39 128-167 95-137 (279)
169 PF10686 DUF2493: Protein of u 87.5 6.2 0.00013 25.9 8.7 57 50-107 4-61 (71)
170 COG1618 Predicted nucleotide k 87.5 1.8 3.9E-05 33.5 5.5 75 129-208 93-177 (179)
171 cd00762 NAD_bind_malic_enz NAD 87.4 1.8 4E-05 35.9 6.0 39 128-167 96-138 (254)
172 PF07429 Glyco_transf_56: 4-al 86.9 20 0.00044 31.3 13.5 54 126-185 255-308 (360)
173 PF15024 Glyco_transf_18: Glyc 86.1 4.8 0.0001 37.3 8.4 78 128-209 333-431 (559)
174 PF04230 PS_pyruv_trans: Polys 84.4 20 0.00044 29.0 11.7 35 126-167 247-281 (286)
175 TIGR02193 heptsyl_trn_I lipopo 84.1 8.6 0.00019 32.8 8.9 80 63-167 197-278 (319)
176 PF03016 Exostosin: Exostosin 83.8 1.6 3.4E-05 36.9 4.1 40 129-170 229-269 (302)
177 COG2204 AtoC Response regulato 83.5 22 0.00047 32.5 11.3 65 148-212 59-126 (464)
178 TIGR01012 Sa_S2_E_A ribosomal 82.9 10 0.00022 30.3 8.1 89 64-167 47-136 (196)
179 PF00072 Response_reg: Respons 81.8 12 0.00025 25.9 7.5 65 137-203 44-112 (112)
180 smart00672 CAP10 Putative lipo 81.8 11 0.00023 31.5 8.2 82 158-243 164-254 (256)
181 PTZ00254 40S ribosomal protein 81.1 13 0.00028 30.9 8.3 90 64-167 56-146 (249)
182 TIGR02195 heptsyl_trn_II lipop 81.1 6.3 0.00014 33.9 7.0 81 63-167 193-275 (334)
183 PF03949 Malic_M: Malic enzyme 80.9 3.1 6.7E-05 34.7 4.6 38 129-167 97-138 (255)
184 PF09949 DUF2183: Uncharacteri 80.9 3.5 7.6E-05 29.1 4.3 34 68-101 53-86 (100)
185 COG0036 Rpe Pentose-5-phosphat 80.5 19 0.00041 29.3 8.8 107 64-186 74-191 (220)
186 PRK10360 DNA-binding transcrip 80.3 24 0.00052 27.0 10.5 70 137-207 48-117 (196)
187 TIGR00725 conserved hypothetic 80.1 4.9 0.00011 30.9 5.3 50 129-181 84-134 (159)
188 PRK10422 lipopolysaccharide co 80.0 17 0.00036 31.7 9.3 35 126-167 252-286 (352)
189 COG1519 KdtA 3-deoxy-D-manno-o 79.5 21 0.00046 31.9 9.5 99 51-168 51-152 (419)
190 PLN03129 NADP-dependent malic 79.3 7.7 0.00017 36.2 7.1 38 129-167 392-433 (581)
191 PF05686 Glyco_transf_90: Glyc 79.3 14 0.00031 32.9 8.6 84 157-244 232-324 (395)
192 cd01080 NAD_bind_m-THF_DH_Cycl 79.2 10 0.00022 29.5 6.8 64 65-143 30-94 (168)
193 PF00852 Glyco_transf_10: Glyc 79.0 3.6 7.8E-05 36.0 4.8 80 129-214 220-304 (349)
194 COG2327 WcaK Polysaccharide py 79.0 47 0.001 29.5 14.0 85 120-214 267-357 (385)
195 PF11071 DUF2872: Protein of u 78.8 2.2 4.7E-05 31.5 2.7 71 131-206 67-140 (141)
196 PRK10964 ADP-heptose:LPS hepto 78.8 8.9 0.00019 32.9 7.1 35 126-167 243-277 (322)
197 COG1570 XseA Exonuclease VII, 78.6 51 0.0011 29.8 13.4 67 71-167 154-230 (440)
198 PRK12862 malic enzyme; Reviewe 78.2 6.4 0.00014 38.2 6.5 100 64-167 178-289 (763)
199 COG0859 RfaF ADP-heptose:LPS h 78.0 10 0.00023 32.8 7.3 80 63-167 194-275 (334)
200 PF02601 Exonuc_VII_L: Exonucl 77.5 45 0.00098 28.6 15.5 46 52-100 17-65 (319)
201 PF01075 Glyco_transf_9: Glyco 77.0 6.2 0.00013 32.2 5.4 83 63-167 123-207 (247)
202 PF00308 Bac_DnaA: Bacterial d 76.6 18 0.00039 29.3 7.9 163 50-244 35-215 (219)
203 PF00205 TPP_enzyme_M: Thiamin 76.5 16 0.00034 26.9 7.1 63 82-145 15-86 (137)
204 COG0052 RpsB Ribosomal protein 76.4 25 0.00054 29.2 8.4 32 137-171 157-188 (252)
205 TIGR00730 conserved hypothetic 75.3 38 0.00082 26.6 13.7 78 123-203 82-176 (178)
206 PRK12861 malic enzyme; Reviewe 75.1 7.1 0.00015 37.8 5.8 99 65-167 175-285 (764)
207 PRK00676 hemA glutamyl-tRNA re 75.0 57 0.0012 28.5 11.0 139 79-243 174-321 (338)
208 PF10649 DUF2478: Protein of u 75.0 2.8 6E-05 32.3 2.5 65 130-198 86-156 (159)
209 PRK13529 malate dehydrogenase; 74.0 39 0.00084 31.6 10.0 38 129-167 373-414 (563)
210 PTZ00317 NADP-dependent malic 73.6 38 0.00082 31.6 9.8 38 129-167 372-413 (559)
211 PRK10916 ADP-heptose:LPS hepto 73.5 14 0.00029 32.1 6.9 84 64-167 200-285 (348)
212 PRK07232 bifunctional malic en 71.6 13 0.00028 36.0 6.7 99 65-167 171-281 (752)
213 PRK04020 rps2P 30S ribosomal p 69.9 39 0.00084 27.2 8.1 89 64-167 53-142 (204)
214 PF00290 Trp_syntA: Tryptophan 69.8 65 0.0014 27.0 14.2 141 42-206 80-237 (259)
215 TIGR02201 heptsyl_trn_III lipo 68.5 24 0.00052 30.5 7.3 83 63-167 199-284 (344)
216 PRK10840 transcriptional regul 67.7 59 0.0013 25.7 11.2 115 79-207 3-125 (216)
217 PF04413 Glycos_transf_N: 3-De 66.3 24 0.00051 27.9 6.2 99 50-167 22-123 (186)
218 TIGR03646 YtoQ_fam YtoQ family 66.2 4.6 9.9E-05 29.9 1.9 72 130-206 69-143 (144)
219 COG0373 HemA Glutamyl-tRNA red 66.1 1E+02 0.0022 27.8 11.9 19 127-145 229-247 (414)
220 cd05212 NAD_bind_m-THF_DH_Cycl 65.8 38 0.00082 25.4 7.0 51 78-143 27-78 (140)
221 PF13167 GTP-bdg_N: GTP-bindin 65.5 21 0.00046 24.9 5.1 72 92-166 10-84 (95)
222 PF03641 Lysine_decarbox: Poss 65.2 19 0.00042 26.6 5.3 79 121-202 37-133 (133)
223 PRK10017 colanic acid biosynth 63.7 82 0.0018 28.4 9.9 39 128-167 109-153 (426)
224 PRK10643 DNA-binding transcrip 63.6 68 0.0015 24.9 10.8 70 137-207 45-117 (222)
225 TIGR03609 S_layer_CsaB polysac 62.1 67 0.0014 27.0 8.7 83 62-167 13-104 (298)
226 COG0281 SfcA Malic enzyme [Ene 61.5 40 0.00086 30.3 7.2 87 65-167 185-297 (432)
227 cd05311 NAD_bind_2_malic_enz N 61.3 44 0.00096 27.2 7.1 35 130-167 91-125 (226)
228 TIGR00237 xseA exodeoxyribonuc 61.0 1.3E+02 0.0028 27.2 15.2 36 62-100 142-180 (432)
229 PRK09581 pleD response regulat 60.3 1.2E+02 0.0026 26.7 12.0 69 137-207 47-121 (457)
230 TIGR01361 DAHP_synth_Bsub phos 59.9 1E+02 0.0022 25.8 9.4 79 91-186 77-160 (260)
231 COG2247 LytB Putative cell wal 58.7 12 0.00026 32.1 3.4 35 73-108 71-105 (337)
232 PRK09722 allulose-6-phosphate 58.1 90 0.0019 25.6 8.3 107 65-186 73-191 (229)
233 cd01425 RPS2 Ribosomal protein 57.8 72 0.0016 25.3 7.6 32 133-167 124-155 (193)
234 PRK00286 xseA exodeoxyribonucl 57.4 1.5E+02 0.0032 26.8 14.8 35 63-100 149-186 (438)
235 TIGR02154 PhoB phosphate regul 57.1 90 0.0019 24.2 10.8 69 137-207 47-121 (226)
236 PRK10816 DNA-binding transcrip 57.0 93 0.002 24.3 10.8 69 137-207 45-117 (223)
237 KOG1050 Trehalose-6-phosphate 56.1 2E+02 0.0044 28.0 11.8 84 126-217 362-449 (732)
238 PRK09468 ompR osmolarity respo 56.1 1E+02 0.0022 24.5 11.1 112 79-207 5-122 (239)
239 PRK08745 ribulose-phosphate 3- 55.9 1.1E+02 0.0024 24.9 12.5 129 5-157 22-152 (223)
240 KOG1467 Translation initiation 55.9 1.7E+02 0.0036 27.0 11.1 105 51-176 362-475 (556)
241 PRK10336 DNA-binding transcrip 55.7 94 0.002 24.0 11.1 69 137-207 45-117 (219)
242 TIGR00511 ribulose_e2b2 ribose 55.6 1.3E+02 0.0029 25.7 10.3 76 75-167 137-222 (301)
243 PRK08673 3-deoxy-7-phosphohept 54.6 1.5E+02 0.0032 25.9 12.3 105 63-186 106-228 (335)
244 TIGR02990 ectoine_eutA ectoine 54.3 52 0.0011 27.1 6.5 84 81-170 122-214 (239)
245 PRK07418 acetolactate synthase 54.2 90 0.0019 29.6 8.9 65 82-146 228-300 (616)
246 PRK10046 dpiA two-component re 52.7 1.2E+02 0.0026 24.2 11.2 68 137-206 51-122 (225)
247 PRK13398 3-deoxy-7-phosphohept 52.6 1.4E+02 0.003 25.1 11.4 106 62-186 39-162 (266)
248 TIGR00732 dprA DNA protecting 52.0 44 0.00096 27.2 5.6 63 134-200 153-218 (220)
249 CHL00148 orf27 Ycf27; Reviewed 50.9 1.2E+02 0.0026 23.8 11.2 113 78-207 5-122 (240)
250 PRK10161 transcriptional regul 50.5 1.2E+02 0.0026 23.7 11.2 45 162-207 76-121 (229)
251 PRK08335 translation initiatio 50.4 1.6E+02 0.0034 25.0 10.4 87 65-168 121-217 (275)
252 PF01008 IF-2B: Initiation fac 50.2 76 0.0017 26.6 7.1 78 73-167 127-215 (282)
253 PF07801 DUF1647: Protein of u 49.7 80 0.0017 23.9 6.2 48 58-106 68-116 (142)
254 TIGR03393 indolpyr_decarb indo 49.4 93 0.002 28.9 8.1 65 82-146 209-282 (539)
255 PRK13837 two-component VirA-li 49.0 94 0.002 30.6 8.4 108 81-207 699-813 (828)
256 PRK06154 hypothetical protein; 48.9 1.4E+02 0.003 28.0 9.1 65 82-146 218-290 (565)
257 PRK08005 epimerase; Validated 48.7 1.4E+02 0.003 24.1 7.9 78 65-158 72-149 (210)
258 PRK10430 DNA-binding transcrip 48.7 1.4E+02 0.0031 24.0 11.3 68 137-205 50-120 (239)
259 PF03437 BtpA: BtpA family; I 48.5 1.6E+02 0.0035 24.6 9.6 23 126-148 210-232 (254)
260 PRK12311 rpsB 30S ribosomal pr 48.3 1.9E+02 0.004 25.2 9.9 62 136-208 152-214 (326)
261 COG1184 GCD2 Translation initi 48.2 1.8E+02 0.0039 25.0 8.8 77 75-168 141-227 (301)
262 PF01408 GFO_IDH_MocA: Oxidore 48.1 53 0.0011 23.1 5.1 69 74-167 20-91 (120)
263 COG3660 Predicted nucleoside-d 47.8 1.7E+02 0.0038 24.8 12.3 34 129-167 237-270 (329)
264 COG0771 MurD UDP-N-acetylmuram 47.6 1.2E+02 0.0026 27.7 8.1 33 132-167 65-98 (448)
265 KOG2619 Fucosyltransferase [Ca 47.1 27 0.00059 30.8 3.8 49 158-214 273-325 (372)
266 TIGR03457 sulphoacet_xsc sulfo 47.1 1.4E+02 0.0031 28.0 9.0 65 82-146 200-272 (579)
267 COG2876 AroA 3-deoxy-D-arabino 46.9 78 0.0017 26.6 6.2 113 62-192 57-186 (286)
268 PRK13660 hypothetical protein; 46.6 1.4E+02 0.0031 23.5 7.9 21 65-85 57-77 (182)
269 TIGR00524 eIF-2B_rel eIF-2B al 46.3 1.8E+02 0.0039 25.0 8.7 85 67-168 140-237 (303)
270 PRK11173 two-component respons 46.2 1.5E+02 0.0032 23.5 10.8 70 137-208 48-120 (237)
271 PLN02470 acetolactate synthase 45.9 1.3E+02 0.0028 28.3 8.5 64 82-145 219-288 (585)
272 PRK09483 response regulator; P 45.9 1.4E+02 0.003 23.1 11.0 20 188-207 101-120 (217)
273 PRK09836 DNA-binding transcrip 45.9 1.4E+02 0.0031 23.3 10.8 69 137-207 45-117 (227)
274 PRK08535 translation initiatio 45.8 2E+02 0.0042 24.8 10.1 76 75-167 142-227 (310)
275 PRK07449 2-succinyl-5-enolpyru 45.8 70 0.0015 29.9 6.7 65 82-146 225-296 (568)
276 COG2062 SixA Phosphohistidine 45.8 1.3E+02 0.0028 23.3 7.0 84 2-98 35-119 (163)
277 PRK06015 keto-hydroxyglutarate 45.0 1E+02 0.0022 24.7 6.6 122 5-167 22-149 (201)
278 PF02882 THF_DHG_CYH_C: Tetrah 44.9 1.4E+02 0.0031 22.9 7.6 50 79-143 36-86 (160)
279 COG1628 Endonuclease V homolog 44.3 94 0.002 24.6 6.0 42 156-217 88-131 (185)
280 PRK06546 pyruvate dehydrogenas 44.2 1.3E+02 0.0027 28.3 8.1 113 82-207 205-323 (578)
281 PRK06112 acetolactate synthase 44.1 1.6E+02 0.0035 27.5 8.9 118 82-207 217-347 (578)
282 PLN02573 pyruvate decarboxylas 44.1 1.3E+02 0.0027 28.4 8.1 78 66-145 214-300 (578)
283 PRK08091 ribulose-phosphate 3- 43.6 1.8E+02 0.004 23.8 8.1 78 65-158 82-161 (228)
284 TIGR00118 acolac_lg acetolacta 43.6 1.4E+02 0.0029 27.9 8.2 119 82-207 205-331 (558)
285 COG4850 Uncharacterized conser 43.6 36 0.00077 29.5 3.9 27 73-99 271-297 (373)
286 PRK07282 acetolactate synthase 43.5 1.3E+02 0.0029 28.1 8.2 65 82-146 214-286 (566)
287 COG1611 Predicted Rossmann fol 43.5 1.7E+02 0.0037 23.5 13.4 40 124-166 97-139 (205)
288 PRK08266 hypothetical protein; 43.0 1.8E+02 0.0038 27.0 8.8 63 82-145 209-272 (542)
289 PF01531 Glyco_transf_11: Glyc 42.4 80 0.0017 26.8 6.0 65 63-146 190-257 (298)
290 cd01452 VWA_26S_proteasome_sub 42.4 1.6E+02 0.0034 23.3 7.2 37 65-101 124-160 (187)
291 TIGR01761 thiaz-red thiazoliny 42.3 1.8E+02 0.0039 25.5 8.2 127 52-209 6-137 (343)
292 PRK13397 3-deoxy-7-phosphohept 42.1 2E+02 0.0044 23.9 8.2 104 64-186 29-150 (250)
293 TIGR01658 EYA-cons_domain eyes 42.0 65 0.0014 26.9 5.0 36 68-107 217-254 (274)
294 PRK10766 DNA-binding transcrip 41.6 1.7E+02 0.0036 22.8 11.2 110 81-207 4-118 (221)
295 PRK06456 acetolactate synthase 40.6 2.1E+02 0.0046 26.7 9.1 63 82-145 211-282 (572)
296 PRK13396 3-deoxy-7-phosphohept 40.4 2.6E+02 0.0056 24.6 12.1 105 63-186 114-236 (352)
297 PRK10529 DNA-binding transcrip 40.2 1.8E+02 0.0038 22.7 10.8 70 137-207 46-117 (225)
298 PRK07789 acetolactate synthase 40.2 1.7E+02 0.0037 27.7 8.4 64 82-145 235-306 (612)
299 KOG1185 Thiamine pyrophosphate 39.7 1.8E+02 0.0039 26.8 7.8 80 63-146 204-286 (571)
300 PF01113 DapB_N: Dihydrodipico 39.5 73 0.0016 23.1 4.7 40 129-170 60-99 (124)
301 COG3563 KpsC Capsule polysacch 39.3 94 0.002 28.6 6.0 82 64-167 166-249 (671)
302 PF06908 DUF1273: Protein of u 39.2 1.6E+02 0.0034 23.1 6.7 21 65-85 57-77 (177)
303 PF13905 Thioredoxin_8: Thiore 38.6 1.2E+02 0.0026 20.2 6.4 55 50-105 2-60 (95)
304 PRK06725 acetolactate synthase 38.6 1.8E+02 0.0038 27.3 8.2 64 82-145 218-289 (570)
305 PF07319 DnaI_N: Primosomal pr 38.1 54 0.0012 22.7 3.6 48 197-248 20-67 (94)
306 PRK13557 histidine kinase; Pro 37.9 3.1E+02 0.0066 24.8 9.7 112 81-208 417-535 (540)
307 COG1707 ACT domain-containing 37.9 2E+02 0.0042 22.5 7.2 43 64-107 127-172 (218)
308 TIGR00173 menD 2-succinyl-5-en 37.6 1.6E+02 0.0035 26.4 7.5 114 82-208 215-338 (432)
309 PRK08322 acetolactate synthase 37.5 2.2E+02 0.0047 26.4 8.6 64 82-145 200-271 (547)
310 PRK09935 transcriptional regul 37.4 1.8E+02 0.004 22.1 11.4 71 137-208 50-123 (210)
311 COG4566 TtrR Response regulato 37.3 2.2E+02 0.0047 22.8 11.4 62 146-208 57-122 (202)
312 PRK05299 rpsB 30S ribosomal pr 37.2 2.5E+02 0.0054 23.5 10.3 64 135-209 156-220 (258)
313 PRK10955 DNA-binding transcrip 37.0 2E+02 0.0044 22.4 10.5 70 136-207 44-116 (232)
314 PRK14057 epimerase; Provisiona 36.7 2.5E+02 0.0055 23.5 7.9 85 64-158 88-175 (254)
315 PRK07524 hypothetical protein; 36.5 2E+02 0.0044 26.6 8.2 64 82-145 205-272 (535)
316 PRK07064 hypothetical protein; 36.5 2E+02 0.0044 26.6 8.2 64 82-146 207-274 (544)
317 PRK08611 pyruvate oxidase; Pro 36.3 2.4E+02 0.0052 26.5 8.7 65 82-146 207-277 (576)
318 TIGR00288 conserved hypothetic 36.3 2E+02 0.0043 22.2 7.4 63 61-140 89-152 (160)
319 COG2870 RfaE ADP-heptose synth 36.3 2.8E+02 0.0061 25.1 8.3 83 128-225 135-222 (467)
320 PRK07710 acetolactate synthase 36.2 2.4E+02 0.0052 26.4 8.7 64 82-145 219-290 (571)
321 PRK09124 pyruvate dehydrogenas 36.2 2E+02 0.0044 26.9 8.2 65 82-146 205-275 (574)
322 PRK09958 DNA-binding transcrip 36.0 2E+02 0.0042 21.9 10.6 20 188-207 99-118 (204)
323 PRK06965 acetolactate synthase 35.8 2.7E+02 0.0059 26.2 9.0 64 82-145 225-296 (587)
324 PRK05858 hypothetical protein; 35.8 2.5E+02 0.0054 26.1 8.6 115 82-207 207-324 (542)
325 CHL00099 ilvB acetohydroxyacid 35.8 3.8E+02 0.0082 25.2 13.5 118 82-207 221-347 (585)
326 PF04312 DUF460: Protein of un 35.7 1E+02 0.0022 23.1 4.8 29 155-183 69-97 (138)
327 PRK06048 acetolactate synthase 35.6 2.1E+02 0.0045 26.7 8.1 65 82-146 211-283 (561)
328 PF00691 OmpA: OmpA family; I 35.6 28 0.00061 23.7 1.9 22 2-23 57-78 (97)
329 TIGR00236 wecB UDP-N-acetylglu 35.5 1.3E+02 0.0028 26.0 6.4 37 129-167 77-115 (365)
330 PLN03029 type-a response regul 35.5 2.3E+02 0.0051 22.7 13.0 47 161-207 101-147 (222)
331 PRK12595 bifunctional 3-deoxy- 35.4 3.1E+02 0.0068 24.2 12.8 105 63-186 131-253 (360)
332 COG0159 TrpA Tryptophan syntha 35.4 2.7E+02 0.0059 23.4 14.8 136 48-207 93-245 (265)
333 PRK15115 response regulator Gl 35.4 3.3E+02 0.0071 24.3 10.1 47 161-207 76-122 (444)
334 COG0106 HisA Phosphoribosylfor 35.4 2.6E+02 0.0056 23.2 12.5 132 1-162 86-238 (241)
335 PF11238 DUF3039: Protein of u 35.3 28 0.00061 21.8 1.5 14 154-167 16-29 (58)
336 PRK08527 acetolactate synthase 35.2 2.3E+02 0.0049 26.5 8.3 64 82-145 207-278 (563)
337 PF00926 DHBP_synthase: 3,4-di 35.2 93 0.002 24.8 4.9 38 155-192 4-54 (194)
338 PRK06276 acetolactate synthase 35.1 1.6E+02 0.0035 27.7 7.3 65 82-146 207-279 (586)
339 PF02401 LYTB: LytB protein; 34.8 1.4E+02 0.003 25.4 6.2 18 121-138 238-256 (281)
340 PRK08978 acetolactate synthase 34.8 3.8E+02 0.0082 24.9 14.7 64 82-145 200-271 (548)
341 TIGR03394 indol_phenyl_DC indo 34.7 3E+02 0.0066 25.5 9.0 64 82-145 205-277 (535)
342 PF00834 Ribul_P_3_epim: Ribul 33.9 1.5E+02 0.0032 23.8 5.9 130 4-158 17-148 (201)
343 PRK07525 sulfoacetaldehyde ace 33.6 3.6E+02 0.0078 25.4 9.4 64 82-145 204-275 (588)
344 PRK08979 acetolactate synthase 33.3 3.5E+02 0.0076 25.3 9.3 64 82-145 210-281 (572)
345 PRK08273 thiamine pyrophosphat 33.1 2.7E+02 0.0058 26.3 8.4 65 82-146 212-282 (597)
346 cd02067 B12-binding B12 bindin 33.0 1.8E+02 0.0038 20.6 6.7 50 52-104 53-103 (119)
347 PRK08199 thiamine pyrophosphat 33.0 2.4E+02 0.0053 26.2 8.1 64 82-145 208-279 (557)
348 TIGR01182 eda Entner-Doudoroff 32.6 1.9E+02 0.0042 23.2 6.4 68 79-167 80-153 (204)
349 cd05565 PTS_IIB_lactose PTS_II 32.5 1.8E+02 0.0038 20.4 5.7 71 82-169 4-79 (99)
350 PF04123 DUF373: Domain of unk 32.3 3.5E+02 0.0076 23.8 9.1 23 192-214 135-161 (344)
351 PRK08327 acetolactate synthase 32.2 2.1E+02 0.0047 26.7 7.6 63 82-146 224-289 (569)
352 TIGR01818 ntrC nitrogen regula 32.0 3.8E+02 0.0082 24.1 10.3 70 137-208 43-116 (463)
353 PRK07979 acetolactate synthase 31.9 3.9E+02 0.0085 25.0 9.3 64 82-145 210-281 (574)
354 PRK09107 acetolactate synthase 31.8 2.7E+02 0.006 26.2 8.3 64 82-145 216-289 (595)
355 cd05125 Mth938_2P1-like Mth938 31.7 1.2E+02 0.0026 21.9 4.6 39 67-105 42-83 (114)
356 COG3414 SgaB Phosphotransferas 31.6 1.8E+02 0.0039 20.2 5.9 47 82-142 5-55 (93)
357 PRK06882 acetolactate synthase 31.6 2.9E+02 0.0062 25.9 8.4 64 82-145 210-281 (574)
358 PRK07092 benzoylformate decarb 31.5 3.6E+02 0.0079 24.9 9.0 62 82-145 210-281 (530)
359 PRK15479 transcriptional regul 31.4 2.4E+02 0.0052 21.6 11.2 20 188-207 98-117 (221)
360 PRK11361 acetoacetate metaboli 31.4 3.8E+02 0.0083 23.9 12.7 71 137-209 49-123 (457)
361 PRK08155 acetolactate synthase 31.3 2.7E+02 0.0058 26.0 8.1 64 82-145 215-286 (564)
362 TIGR03254 oxalate_oxc oxalyl-C 31.2 2.3E+02 0.005 26.4 7.6 63 82-146 210-275 (554)
363 PRK09259 putative oxalyl-CoA d 31.2 2.2E+02 0.0047 26.7 7.5 63 82-146 217-282 (569)
364 PRK11083 DNA-binding response 31.0 2.5E+02 0.0054 21.7 10.4 20 188-207 101-120 (228)
365 PLN00125 Succinyl-CoA ligase [ 30.8 1.7E+02 0.0038 25.1 6.2 52 153-207 224-295 (300)
366 PF13788 DUF4180: Domain of un 30.8 2.1E+02 0.0045 20.7 5.9 42 79-133 69-112 (113)
367 COG1830 FbaB DhnA-type fructos 30.6 1.1E+02 0.0024 25.7 4.8 50 159-208 199-259 (265)
368 cd02068 radical_SAM_B12_BD B12 30.5 1.1E+02 0.0024 22.0 4.5 26 65-90 54-79 (127)
369 PRK10701 DNA-binding transcrip 30.3 2.7E+02 0.0059 21.9 10.9 69 137-207 46-117 (240)
370 PRK06457 pyruvate dehydrogenas 30.3 2.7E+02 0.0059 25.9 8.0 64 82-145 199-268 (549)
371 PRK13940 glutamyl-tRNA reducta 30.2 4.1E+02 0.0089 23.9 11.7 36 127-167 233-269 (414)
372 PRK06228 F0F1 ATP synthase sub 29.8 2.1E+02 0.0045 21.2 5.8 45 190-237 84-128 (131)
373 PF13941 MutL: MutL protein 29.8 1.9E+02 0.004 26.5 6.5 53 52-105 128-180 (457)
374 COG0761 lytB 4-Hydroxy-3-methy 29.7 3.3E+02 0.0071 23.3 7.4 12 93-104 228-239 (294)
375 cd03129 GAT1_Peptidase_E_like 29.5 2.9E+02 0.0062 21.9 8.9 78 78-167 28-119 (210)
376 PRK06466 acetolactate synthase 29.3 3.6E+02 0.0079 25.2 8.7 64 82-145 210-281 (574)
377 TIGR01504 glyox_carbo_lig glyo 29.3 3.4E+02 0.0073 25.6 8.4 64 82-145 206-278 (588)
378 COG0673 MviM Predicted dehydro 29.3 3.5E+02 0.0077 22.9 8.9 54 93-167 41-96 (342)
379 TIGR03156 GTP_HflX GTP-binding 29.3 1.4E+02 0.0029 26.2 5.5 73 91-166 18-93 (351)
380 PRK13435 response regulator; P 28.8 2.2E+02 0.0048 20.4 10.0 19 188-206 101-119 (145)
381 PRK14189 bifunctional 5,10-met 28.8 3.3E+02 0.0071 23.2 7.4 50 79-143 158-208 (285)
382 cd01965 Nitrogenase_MoFe_beta_ 28.8 4.3E+02 0.0093 23.7 8.9 92 66-166 286-393 (428)
383 PF04430 DUF498: Protein of un 28.7 69 0.0015 22.8 3.0 35 71-105 45-82 (110)
384 PRK13371 4-hydroxy-3-methylbut 28.5 2.5E+02 0.0055 25.0 6.9 26 79-104 290-315 (387)
385 PTZ00187 succinyl-CoA syntheta 28.4 1.9E+02 0.0042 25.0 6.1 19 189-207 296-314 (317)
386 COG0707 MurG UDP-N-acetylgluco 28.4 3.3E+02 0.0071 24.0 7.7 28 137-167 92-119 (357)
387 PRK14175 bifunctional 5,10-met 28.3 3.5E+02 0.0075 23.1 7.5 50 79-143 158-208 (286)
388 PF07631 PSD4: Protein of unkn 28.2 1.1E+02 0.0024 22.5 4.1 31 193-223 33-63 (128)
389 PRK11058 GTPase HflX; Provisio 28.1 1.7E+02 0.0036 26.5 5.9 72 92-166 27-101 (426)
390 PF04016 DUF364: Domain of unk 27.9 48 0.001 25.1 2.1 73 128-203 54-129 (147)
391 cd00291 SirA_YedF_YeeD SirA, Y 27.8 1.6E+02 0.0035 18.4 4.8 42 65-106 12-53 (69)
392 TIGR02418 acolac_catab acetola 27.6 3.9E+02 0.0084 24.8 8.4 64 82-145 199-271 (539)
393 PRK13558 bacterio-opsin activa 27.4 5.4E+02 0.012 24.4 10.3 88 78-181 6-98 (665)
394 COG1152 CdhA CO dehydrogenase/ 27.4 4.2E+02 0.0091 25.2 8.2 100 82-184 239-356 (772)
395 PRK01710 murD UDP-N-acetylmura 27.1 4.4E+02 0.0095 23.8 8.6 34 132-167 73-106 (458)
396 PRK00048 dihydrodipicolinate r 26.7 1.9E+02 0.0041 24.0 5.7 40 129-170 53-92 (257)
397 TIGR01011 rpsB_bact ribosomal 26.4 3.6E+02 0.0077 22.0 9.6 30 135-167 154-183 (225)
398 PRK10710 DNA-binding transcrip 26.2 3.2E+02 0.0069 21.3 10.8 20 188-207 107-126 (240)
399 PRK09191 two-component respons 26.1 3.5E+02 0.0075 21.7 12.6 126 65-207 124-253 (261)
400 PF06506 PrpR_N: Propionate ca 25.9 1.5E+02 0.0032 22.9 4.6 21 65-87 65-85 (176)
401 TIGR02802 Pal_lipo peptidoglyc 25.7 42 0.00091 23.3 1.4 23 2-24 58-80 (104)
402 PLN02757 sirohydrochlorine fer 25.7 1.1E+02 0.0024 23.3 3.8 13 73-85 99-111 (154)
403 TIGR03569 NeuB_NnaB N-acetylne 25.4 3.7E+02 0.008 23.4 7.3 77 91-186 77-160 (329)
404 PRK14176 bifunctional 5,10-met 25.3 3.7E+02 0.008 22.9 7.1 49 79-142 164-213 (287)
405 PRK02255 putrescine carbamoylt 25.2 4.6E+02 0.01 22.9 10.5 92 48-142 118-228 (338)
406 PRK00910 ribB 3,4-dihydroxy-2- 25.1 2E+02 0.0042 23.5 5.2 42 155-196 20-74 (218)
407 PRK14191 bifunctional 5,10-met 25.0 4E+02 0.0087 22.7 7.3 49 79-142 157-206 (285)
408 PF02310 B12-binding: B12 bind 24.9 2E+02 0.0044 20.1 5.0 28 63-90 65-92 (121)
409 TIGR00045 glycerate kinase. Th 24.8 5E+02 0.011 23.1 8.4 39 129-167 276-320 (375)
410 PRK11107 hybrid sensory histid 24.7 6.8E+02 0.015 24.6 10.9 112 79-207 667-786 (919)
411 PRK00779 ornithine carbamoyltr 24.7 4.5E+02 0.0097 22.5 11.6 92 48-142 119-223 (304)
412 PF03808 Glyco_tran_WecB: Glyc 24.6 3.3E+02 0.0071 20.9 7.1 31 49-83 48-78 (172)
413 COG0190 FolD 5,10-methylene-te 24.6 4.4E+02 0.0094 22.5 7.3 51 78-143 155-206 (283)
414 PRK01045 ispH 4-hydroxy-3-meth 24.6 3.9E+02 0.0084 22.9 7.2 10 73-82 178-187 (298)
415 PF01081 Aldolase: KDPG and KH 24.5 79 0.0017 25.2 2.9 68 79-167 80-153 (196)
416 cd03145 GAT1_cyanophycinase Ty 24.5 3.7E+02 0.0081 21.5 8.7 17 128-144 75-91 (217)
417 COG0108 RibB 3,4-dihydroxy-2-b 24.5 2.6E+02 0.0057 22.5 5.7 44 155-198 9-65 (203)
418 TIGR01319 glmL_fam conserved h 24.4 2.8E+02 0.006 25.4 6.5 53 52-105 124-176 (463)
419 PRK05773 3,4-dihydroxy-2-butan 24.3 2.2E+02 0.0048 23.2 5.4 42 155-196 6-60 (219)
420 PF10093 DUF2331: Uncharacteri 24.3 5.1E+02 0.011 23.1 9.8 95 61-171 195-293 (374)
421 PF11965 DUF3479: Domain of un 24.2 3.4E+02 0.0074 21.0 6.4 72 129-206 50-124 (164)
422 PRK01792 ribB 3,4-dihydroxy-2- 23.9 2.2E+02 0.0048 23.1 5.3 42 155-196 19-73 (214)
423 KOG2264 Exostosin EXT1L [Signa 23.9 2.2E+02 0.0048 26.8 5.8 98 123-226 403-507 (907)
424 PRK10100 DNA-binding transcrip 23.8 3.9E+02 0.0084 21.5 9.4 111 80-208 11-127 (216)
425 TIGR03787 marine_sort_RR prote 23.7 3.5E+02 0.0076 20.9 10.9 45 162-207 74-119 (227)
426 TIGR00853 pts-lac PTS system, 23.5 2.6E+02 0.0055 19.3 5.5 70 82-168 7-81 (95)
427 COG3848 Phosphohistidine swive 23.5 99 0.0021 22.0 2.8 48 119-169 33-81 (111)
428 cd01974 Nitrogenase_MoFe_beta 23.4 5.5E+02 0.012 23.1 8.6 42 65-107 289-330 (435)
429 KOG1021 Acetylglucosaminyltran 23.4 1.1E+02 0.0024 27.9 4.0 40 129-170 336-376 (464)
430 TIGR01499 folC folylpolyglutam 23.3 4.5E+02 0.0097 23.1 7.8 19 52-70 308-326 (397)
431 COG5017 Uncharacterized conser 23.3 3.4E+02 0.0073 20.6 9.3 71 125-203 54-133 (161)
432 PRK05718 keto-hydroxyglutarate 23.2 2.9E+02 0.0063 22.3 6.0 68 79-167 87-160 (212)
433 PF10933 DUF2827: Protein of u 23.1 5.3E+02 0.012 22.8 10.5 126 74-226 216-348 (364)
434 PF10163 EnY2: Transcription f 23.0 1.8E+02 0.004 19.6 4.1 48 193-240 14-63 (86)
435 PLN02342 ornithine carbamoyltr 22.9 5.3E+02 0.011 22.7 10.9 92 48-142 161-265 (348)
436 PF12390 Se-cys_synth_N: Selen 22.8 1.6E+02 0.0034 16.7 3.9 24 201-224 6-29 (40)
437 PRK14177 bifunctional 5,10-met 22.7 4.8E+02 0.01 22.2 7.4 49 79-142 159-208 (284)
438 PF00289 CPSase_L_chain: Carba 22.6 93 0.002 22.2 2.7 47 81-142 4-50 (110)
439 KOG0832 Mitochondrial/chloropl 22.6 2E+02 0.0042 23.8 4.7 27 138-167 175-201 (251)
440 PRK10834 vancomycin high tempe 22.5 1.1E+02 0.0024 25.3 3.4 39 63-106 126-164 (239)
441 PRK09932 glycerate kinase II; 22.4 5.6E+02 0.012 22.9 8.2 39 129-167 277-321 (381)
442 cd03421 SirA_like_N SirA_like_ 22.4 2.1E+02 0.0046 17.9 4.5 40 66-106 13-52 (67)
443 COG0745 OmpR Response regulato 22.2 4.3E+02 0.0094 21.5 10.8 110 81-208 2-118 (229)
444 PRK14188 bifunctional 5,10-met 22.2 4.6E+02 0.0099 22.5 7.2 50 79-143 158-208 (296)
445 PRK00014 ribB 3,4-dihydroxy-2- 22.0 2.4E+02 0.0053 23.2 5.2 41 155-195 24-77 (230)
446 PRK08617 acetolactate synthase 22.0 5.3E+02 0.012 23.9 8.3 64 82-145 205-277 (552)
447 PF02593 dTMP_synthase: Thymid 21.9 4.4E+02 0.0096 21.4 8.3 54 47-105 49-105 (217)
448 PF02817 E3_binding: e3 bindin 21.8 48 0.001 18.9 0.8 22 1-22 6-27 (39)
449 COG0379 NadA Quinolinate synth 21.8 5.3E+02 0.012 22.4 7.8 32 65-99 196-227 (324)
450 PRK11269 glyoxylate carboligas 21.8 6.8E+02 0.015 23.5 13.1 65 82-146 207-280 (591)
451 cd05564 PTS_IIB_chitobiose_lic 21.5 2.8E+02 0.0061 19.0 5.5 70 82-168 3-77 (96)
452 PRK11466 hybrid sensory histid 21.5 7.9E+02 0.017 24.2 14.9 113 79-207 681-799 (914)
453 PRK13695 putative NTPase; Prov 21.5 2.7E+02 0.0058 21.2 5.3 50 155-204 119-170 (174)
454 PRK09314 bifunctional 3,4-dihy 21.4 2.4E+02 0.0053 24.6 5.4 42 155-196 9-63 (339)
455 PF07862 Nif11: Nitrogen fixat 21.4 1.9E+02 0.004 17.0 3.5 23 195-217 3-25 (49)
456 cd04155 Arl3 Arl3 subfamily. 21.2 3.5E+02 0.0076 20.0 6.4 13 130-142 75-87 (173)
457 TIGR01917 gly_red_sel_B glycin 21.2 3E+02 0.0065 24.9 6.0 64 136-203 76-145 (431)
458 PRK09485 mmuM homocysteine met 21.2 2.6E+02 0.0057 23.8 5.6 51 155-205 171-235 (304)
459 TIGR01918 various_sel_PB selen 21.2 2.9E+02 0.0063 25.0 5.9 64 136-203 76-145 (431)
460 PRK11517 transcriptional regul 21.1 3.9E+02 0.0085 20.5 10.8 69 137-207 45-116 (223)
461 cd01966 Nitrogenase_NifN_1 Nit 21.0 6.1E+02 0.013 22.7 8.2 92 65-166 286-382 (417)
462 PRK10342 glycerate kinase I; P 20.9 6.1E+02 0.013 22.7 8.5 39 129-167 277-321 (381)
463 PRK14172 bifunctional 5,10-met 20.9 5.2E+02 0.011 21.9 7.4 49 79-142 158-207 (278)
464 PF13907 DUF4208: Domain of un 20.7 1.7E+02 0.0036 20.5 3.6 44 197-240 54-99 (100)
465 TIGR02956 TMAO_torS TMAO reduc 20.6 8.4E+02 0.018 24.2 10.7 111 80-207 703-822 (968)
466 TIGR02617 tnaA_trp_ase tryptop 20.5 3.8E+02 0.0082 24.6 6.5 112 91-218 205-334 (467)
467 PRK05331 putative phosphate ac 20.3 3.8E+02 0.0083 23.3 6.5 38 63-104 15-52 (334)
468 cd03420 SirA_RHOD_Pry_redox Si 20.0 2.5E+02 0.0054 17.9 4.7 41 66-106 13-53 (69)
469 PF14386 DUF4417: Domain of un 20.0 4.6E+02 0.01 20.9 7.0 27 63-89 152-178 (200)
470 PLN02516 methylenetetrahydrofo 20.0 5.7E+02 0.012 22.0 7.4 50 79-143 167-217 (299)
No 1
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-39 Score=277.96 Aligned_cols=234 Identities=34% Similarity=0.517 Sum_probs=213.8
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCC-CeEEEEeCCCcchHHHHHHHHHHHHHhCCC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAH-RQVWMASSIHRGEEKVMLAVHKVLMQKNPN 79 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~-~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~ 79 (248)
|+..++++.++|+++ |.++||.+||...++ .+......+|..++. +++|+++|+|+++.+.++++++.+++++||
T Consensus 185 se~D~~Rf~~LGa~~--v~v~GNlKfd~~~~~--~~~~~~~~~r~~l~~~r~v~iaaSTH~GEeei~l~~~~~l~~~~~~ 260 (419)
T COG1519 185 SEEDAQRFRSLGAKP--VVVTGNLKFDIEPPP--QLAAELAALRRQLGGHRPVWVAASTHEGEEEIILDAHQALKKQFPN 260 (419)
T ss_pred CHHHHHHHHhcCCcc--eEEecceeecCCCCh--hhHHHHHHHHHhcCCCCceEEEecCCCchHHHHHHHHHHHHhhCCC
Confidence 678899999999987 999999999987643 244556778888875 999999999999989999999999999999
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAA 159 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~ 159 (248)
..+++||+||++.+.+++++++.|++...++.+..+..+++|++.|++|+|..+|..||++|||+|+.+ .||||++||+
T Consensus 261 ~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~-~GGHN~LEpa 339 (419)
T COG1519 261 LLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVP-IGGHNPLEPA 339 (419)
T ss_pred ceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccC-CCCCChhhHH
Confidence 999999999999999999999999999999998777778899999999999999999999999999997 5899999999
Q ss_pred hhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 043830 160 AAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLN 239 (248)
Q Consensus 160 a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (248)
++|+|||.|+.+.|+.++++.+..+| .++.++|.+.|++.+..+++|++.+++|++++...+.+ ..++.+++++.++
T Consensus 340 ~~~~pvi~Gp~~~Nf~ei~~~l~~~g--a~~~v~~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~-~~gal~r~l~~l~ 416 (419)
T COG1519 340 AFGTPVIFGPYTFNFSDIAERLLQAG--AGLQVEDADLLAKAVELLLADEDKREAYGRAGLEFLAQ-NRGALARTLEALK 416 (419)
T ss_pred HcCCCEEeCCccccHHHHHHHHHhcC--CeEEECCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhh
Confidence 99999999999999999999998877 67888899999999999999999999999999999876 6779999999998
Q ss_pred HHh
Q 043830 240 FHV 242 (248)
Q Consensus 240 ~~~ 242 (248)
+++
T Consensus 417 ~~~ 419 (419)
T COG1519 417 PYL 419 (419)
T ss_pred hcC
Confidence 764
No 2
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=265.06 Aligned_cols=238 Identities=32% Similarity=0.491 Sum_probs=199.9
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhc-CCCeEEEEeCCCcchHHHHHHHHHHHHHhCCC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASL-AHRQVWMASSIHRGEEKVMLAVHKVLMQKNPN 79 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~-~~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~ 79 (248)
|+.+++.+.++|++++ |.++||.++|...++. .......++..+ +++++++++|+++++.+.+++|+..+.+.+|+
T Consensus 186 S~~~~~~l~~~g~~~~-i~vi~n~~~d~~~~~~--~~~~~~~~r~~~~~~~~vil~~~~~~~~~~~ll~A~~~l~~~~~~ 262 (425)
T PRK05749 186 SEEDAERFLALGAKNE-VTVTGNLKFDIEVPPE--LAARAATLRRQLAPNRPVWIAASTHEGEEELVLDAHRALLKQFPN 262 (425)
T ss_pred CHHHHHHHHHcCCCCC-cEecccccccCCCChh--hHHHHHHHHHHhcCCCcEEEEeCCCchHHHHHHHHHHHHHHhCCC
Confidence 6788999999999888 9999998776653221 112234567667 46778888888888888999999998888899
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAA 159 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~ 159 (248)
++|+|+|+|+++.++++++++++|+....++.+..+.+..+|++.|+.++++.+|+.||++|+++|+.|+ ||++++|||
T Consensus 263 ~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~-~g~~~lEAm 341 (425)
T PRK05749 263 LLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKR-GGHNPLEPA 341 (425)
T ss_pred cEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCC-CCCCHHHHH
Confidence 9999999999876789999999999876665554443446799999999999999999999999999887 699999999
Q ss_pred hhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 043830 160 AAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLN 239 (248)
Q Consensus 160 a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (248)
+||+|||+|+..++++++.+.+.+.| +++.++|+++|+++|.++++|++.+++|+++|++++.+ +.++++++++.|.
T Consensus 342 a~G~PVI~g~~~~~~~e~~~~~~~~g--~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~-~~~~~~~~~~~l~ 418 (425)
T PRK05749 342 AFGVPVISGPHTFNFKEIFERLLQAG--AAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQ-NQGALQRTLQLLE 418 (425)
T ss_pred HhCCCEEECCCccCHHHHHHHHHHCC--CeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-CccHHHHHHHHHH
Confidence 99999999998888988887765554 77889999999999999999999999999999999876 4689999999999
Q ss_pred HHhhhh
Q 043830 240 FHVFRR 245 (248)
Q Consensus 240 ~~~~~~ 245 (248)
+++..+
T Consensus 419 ~~l~~~ 424 (425)
T PRK05749 419 PYLPPL 424 (425)
T ss_pred HhcccC
Confidence 877543
No 3
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.95 E-value=3.2e-27 Score=209.52 Aligned_cols=212 Identities=15% Similarity=0.080 Sum_probs=162.6
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~ 77 (248)
|+..++.+.++|++++||.+++|+ +|... .+... ...++...+++.|+. .|+++.+++|++.+.++.
T Consensus 182 S~~~~~~l~~~g~~~~ki~vi~nG-vd~~~f~~~~~---------~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~ 251 (406)
T PRK15427 182 SDLWAGRLQKMGCPPEKIAVSRMG-VDMTRFSPRPV---------KAPATPLEIISVARLTEKKGLHVAIEACRQLKEQG 251 (406)
T ss_pred CHHHHHHHHHcCCCHHHEEEcCCC-CCHHHcCCCcc---------ccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhC
Confidence 667888888899999999999985 45432 11100 001233445555543 478899999999998888
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccC------CCCC
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFL------PGLA 151 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~------e~~g 151 (248)
++++++|+|+|+.+ ++++++++++|+...+.+.|.. +..++.++|+.||++ +.||.. ||+
T Consensus 252 ~~~~l~ivG~G~~~-~~l~~~~~~~~l~~~V~~~G~~-----------~~~el~~~l~~aDv~-v~pS~~~~~g~~Eg~- 317 (406)
T PRK15427 252 VAFRYRILGIGPWE-RRLRTLIEQYQLEDVVEMPGFK-----------PSHEVKAMLDDADVF-LLPSVTGADGDMEGI- 317 (406)
T ss_pred CCEEEEEEECchhH-HHHHHHHHHcCCCCeEEEeCCC-----------CHHHHHHHHHhCCEE-EECCccCCCCCccCc-
Confidence 99999999999876 7899999999987544333322 236899999999995 567764 775
Q ss_pred CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHh--ch
Q 043830 152 GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCAL--SS 228 (248)
Q Consensus 152 g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~--~~ 228 (248)
|.+++||||||+|||+++. ++.+|+++ +..+|++++++|+++|+++|.++++ |++.+++|+++|++++.+. |+
T Consensus 318 p~~llEAma~G~PVI~t~~-~g~~E~v~---~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 318 PVALMEAMAVGIPVVSTLH-SGIPELVE---ADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred cHHHHHHHhCCCCEEEeCC-CCchhhhc---CCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 8899999999999999765 46665543 3446688888999999999999999 9999999999999998654 67
Q ss_pred hHHHHHHHHHHH
Q 043830 229 GIVANVWNLLNF 240 (248)
Q Consensus 229 ~~~~~~l~~~~~ 240 (248)
..++++.++|++
T Consensus 394 ~~~~~l~~~~~~ 405 (406)
T PRK15427 394 VINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHhh
Confidence 888888888765
No 4
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.95 E-value=3.5e-26 Score=200.40 Aligned_cols=218 Identities=17% Similarity=0.164 Sum_probs=167.1
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCccccccc-CCCCCCcccHHHH-HHhcC--CCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEY-DESEGDIGSIEDL-KASLA--HRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~-r~~~~--~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+.+++.+.+ .|++++++.+++|+ +|... .+.. ...... +..+. +.+++++.|+. .|+.+.+++|+..+
T Consensus 144 s~~~~~~~~~~~~~~~~~~~vi~ng-vd~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l 219 (374)
T TIGR03088 144 SRDLEDWLRGPVKVPPAKIHQIYNG-VDTERFHPSR---GDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALL 219 (374)
T ss_pred CHHHHHHHHHhcCCChhhEEEeccC-ccccccCCCc---cchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHH
Confidence 5677888865 68999999999986 45432 2211 111112 22222 45566666543 47788999999998
Q ss_pred HHhCC----CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCC
Q 043830 74 MQKNP----NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPG 149 (248)
Q Consensus 74 ~~~~~----~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~ 149 (248)
.++.+ +++|+++|+|+.+ +++++.++++++.. .++|.+...++..+|+.||+ ++.||..||
T Consensus 220 ~~~~~~~~~~~~l~i~G~g~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~adi-~v~pS~~Eg 284 (374)
T TIGR03088 220 VRQLPEGAERLRLVIVGDGPAR-GACEQMVRAAGLAH-------------LVWLPGERDDVPALMQALDL-FVLPSLAEG 284 (374)
T ss_pred HHhCcccccceEEEEecCCchH-HHHHHHHHHcCCcc-------------eEEEcCCcCCHHHHHHhcCE-EEecccccc
Confidence 77655 6899999998876 78899998888764 35566666789999999999 567888898
Q ss_pred CCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-Hh-c
Q 043830 150 LAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFC-AL-S 227 (248)
Q Consensus 150 ~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~-~ 227 (248)
| |++++|||+||+|||+++. ++.+++++ +..+|+++.++|+++++++|.++++|++.+++|++++++++. ++ |
T Consensus 285 ~-~~~~lEAma~G~Pvv~s~~-~g~~e~i~---~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~ 359 (374)
T TIGR03088 285 I-SNTILEAMASGLPVIATAV-GGNPELVQ---HGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSI 359 (374)
T ss_pred C-chHHHHHHHcCCCEEEcCC-CCcHHHhc---CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 6 9999999999999999865 46666543 334568888899999999999999999999999999999885 55 7
Q ss_pred hhHHHHHHHHHHHHh
Q 043830 228 SGIVANVWNLLNFHV 242 (248)
Q Consensus 228 ~~~~~~~l~~~~~~~ 242 (248)
+.+++++.++|++++
T Consensus 360 ~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 360 NAMVAAYAGLYDQLL 374 (374)
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999998763
No 5
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.94 E-value=6e-25 Score=195.25 Aligned_cols=220 Identities=14% Similarity=0.124 Sum_probs=167.4
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+.+++.+.+.|+++++|.+++|+ +|.+ +.+.. ......++++++ +.+++++.|+. .|+++.+++|++.+.
T Consensus 179 S~~~~~~~~~~~~~~~~i~vi~ng-vd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~ 255 (412)
T PRK10307 179 SRSMMNKAREKGVAAEKVIFFPNW-SEVARFQPVA--DADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLR 255 (412)
T ss_pred CHHHHHHHHHcCCCcccEEEECCC-cCHhhcCCCC--ccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhc
Confidence 678888888889999999999986 4543 22111 111234666664 45677776653 478899999998874
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCC-
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLA- 151 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~g- 151 (248)
+.|+++|+|+|+|+.+ ++++++++++++. +|.|.|. .++++.+|+.||+++ .+|..|+++
T Consensus 256 -~~~~~~l~ivG~g~~~-~~l~~~~~~~~l~--------------~v~f~G~~~~~~~~~~~~~aDi~v-~ps~~e~~~~ 318 (412)
T PRK10307 256 -DRPDLIFVICGQGGGK-ARLEKMAQCRGLP--------------NVHFLPLQPYDRLPALLKMADCHL-LPQKAGAADL 318 (412)
T ss_pred -cCCCeEEEEECCChhH-HHHHHHHHHcCCC--------------ceEEeCCCCHHHHHHHHHhcCEeE-EeeccCcccc
Confidence 4688999999999876 7899999888775 2445553 468999999999965 467766531
Q ss_pred --CCCHHHHHhhCCcEEECCCCCC-hHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH-h-
Q 043830 152 --GHNISEAAAAGCAVLTGPHIGH-YSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA-L- 226 (248)
Q Consensus 152 --g~~~lEA~a~G~Pvi~~~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~-~- 226 (248)
+..++|||+||+|||+++.++. ..+++ . ++|+++.++|+++|+++|.++++|++++++|+++|++++.+ +
T Consensus 319 ~~p~kl~eama~G~PVi~s~~~g~~~~~~i----~-~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs 393 (412)
T PRK10307 319 VLPSKLTNMLASGRNVVATAEPGTELGQLV----E-GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLD 393 (412)
T ss_pred cCcHHHHHHHHcCCCEEEEeCCCchHHHHH----h-CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Confidence 2336999999999999765432 33433 2 45688888999999999999999999999999999999865 5
Q ss_pred chhHHHHHHHHHHHHhhhh
Q 043830 227 SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~ 245 (248)
|+..++++++.|++++..|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~ 412 (412)
T PRK10307 394 KENVLRQFIADIRGLVAER 412 (412)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 7999999999999998765
No 6
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.94 E-value=1.2e-25 Score=201.28 Aligned_cols=219 Identities=11% Similarity=0.048 Sum_probs=161.2
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCccccccc-CCCCCCc-ccHHHHHHhcC-CCeEEEEeCC--CcchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEY-DESEGDI-GSIEDLKASLA-HRQVWMASSI--HRGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~-~~~~~~~-~~~~~~r~~~~-~~~v~l~~~~--~~~~~~~ll~a~~~l~ 74 (248)
|...++.+.+ +|+|++||+|++|+ +|... .+....+ ..+..++..++ +.+++.+.++ ..|+...+|+++..+.
T Consensus 346 s~~v~~~l~~~lgip~~KI~VIyNG-VD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~ll 424 (578)
T PRK15490 346 NHCVTRHYADWLKLEAKHFQVVYNG-VLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYL 424 (578)
T ss_pred cHHHHHHHHHHhCCCHHHEEEEeCC-cchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHH
Confidence 3456677755 68999999999996 45432 2211000 01112222233 3445544443 2467788999999888
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
+..|+++|+|+|+|+.+ ++++++++++|+.. +|.|.|...+++.+|+.+|+ |+.||.+||| |++
T Consensus 425 k~~pdirLvIVGdG~~~-eeLk~la~elgL~d-------------~V~FlG~~~Dv~~~LaaADV-fVlPS~~EGf-p~v 488 (578)
T PRK15490 425 QHHPATRFVLVGDGDLR-AEAQKRAEQLGILE-------------RILFVGASRDVGYWLQKMNV-FILFSRYEGL-PNV 488 (578)
T ss_pred hHCCCeEEEEEeCchhH-HHHHHHHHHcCCCC-------------cEEECCChhhHHHHHHhCCE-EEEcccccCc-cHH
Confidence 88899999999999876 78999999998853 56777777899999999999 5668889986 999
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHH---HHhhhCHHHHHHHHHHHHHHHHH-h-chh
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEAL---SQLFSDARVLEAQQMAAKQAFCA-L-SSG 229 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i---~~ll~~~~~~~~~~~~~~~~~~~-~-~~~ 229 (248)
++||||||+|||+++. ++.++++. +..+|+++++.|++++++++ ..+..+...+..|++++++++.+ | ++.
T Consensus 489 lLEAMA~GlPVVATdv-GG~~EiV~---dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~ 564 (578)
T PRK15490 489 LIEAQMVGVPVISTPA-GGSAECFI---EGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEH 564 (578)
T ss_pred HHHHHHhCCCEEEeCC-CCcHHHcc---cCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 9999999999999865 46666543 45567888889988888876 44566666677899999999865 4 789
Q ss_pred HHHHHHHHHHH
Q 043830 230 IVANVWNLLNF 240 (248)
Q Consensus 230 ~~~~~l~~~~~ 240 (248)
++.++.++|++
T Consensus 565 Mv~~y~ki~~~ 575 (578)
T PRK15490 565 MVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHh
Confidence 99999988875
No 7
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.94 E-value=2.7e-25 Score=200.57 Aligned_cols=213 Identities=15% Similarity=0.125 Sum_probs=159.8
Q ss_pred CHHHHHHHHHcC-CCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc----CCCeEEEEeCCC--cchHHHHHHHHHH
Q 043830 1 STLQAIRFQLLE-ASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL----AHRQVWMASSIH--RGEEKVMLAVHKV 72 (248)
Q Consensus 1 s~~~~~~l~~~g-v~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~----~~~~v~l~~~~~--~~~~~~ll~a~~~ 72 (248)
|+..++.+.+.| .+.++|.+++|+ +|.+. .+.. ....++.++ .+++++++.|+. .|+++.++++++.
T Consensus 213 S~~~~~~l~~~~~~~~~kv~vi~nG-vd~~~f~p~~----~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~ 287 (465)
T PLN02871 213 SPALGKELEAAGVTAANRIRVWNKG-VDSESFHPRF----RSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMER 287 (465)
T ss_pred CHHHHHHHHHcCCCCcCeEEEeCCc-cCccccCCcc----ccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHh
Confidence 567888888877 456899999985 45542 2211 112344443 255677776654 4677788887654
Q ss_pred HHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCC
Q 043830 73 LMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGL 150 (248)
Q Consensus 73 l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~ 150 (248)
.|+++|+|+|+|+.+ +++++++... +|.|.|.. +++..+|+.||+ ++.+|..|++
T Consensus 288 ----~~~~~l~ivG~G~~~-~~l~~~~~~~-----------------~V~f~G~v~~~ev~~~~~~aDv-~V~pS~~E~~ 344 (465)
T PLN02871 288 ----LPGARLAFVGDGPYR-EELEKMFAGT-----------------PTVFTGMLQGDELSQAYASGDV-FVMPSESETL 344 (465)
T ss_pred ----CCCcEEEEEeCChHH-HHHHHHhccC-----------------CeEEeccCCHHHHHHHHHHCCE-EEECCccccc
Confidence 478999999998865 6777766532 34555543 689999999999 5668888986
Q ss_pred CCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chh
Q 043830 151 AGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSG 229 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~ 229 (248)
|++++||||||+|||+++.+ +.+++++.-...++|+++.++|+++|+++|.++++|++.+++|+++++++++++ |+.
T Consensus 345 -g~~vlEAmA~G~PVI~s~~g-g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~ 422 (465)
T PLN02871 345 -GFVVLEAMASGVPVVAARAG-GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWDWRA 422 (465)
T ss_pred -CcHHHHHHHcCCCEEEcCCC-CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHH
Confidence 89999999999999987654 666655420014556888889999999999999999999999999999999888 899
Q ss_pred HHHHHHH-HHHHHhh
Q 043830 230 IVANVWN-LLNFHVF 243 (248)
Q Consensus 230 ~~~~~l~-~~~~~~~ 243 (248)
+++++++ .|.+++.
T Consensus 423 ~a~~l~~~~Y~~~~~ 437 (465)
T PLN02871 423 ATRKLRNEQYSAAIW 437 (465)
T ss_pred HHHHHHHHHHHHHHH
Confidence 9999998 6887654
No 8
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.94 E-value=7.6e-25 Score=193.95 Aligned_cols=218 Identities=17% Similarity=0.135 Sum_probs=166.0
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+.+++.+.. .|.+++||.+++|+ .|... .+ ......+.+++ +++++++.|+. .|+.+.+++|+..+
T Consensus 171 s~~~~~~~~~~~~~~~~ki~vi~ng-vd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l 244 (405)
T TIGR03449 171 TDEEARDLVRHYDADPDRIDVVAPG-ADLERFRP-----GDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAEL 244 (405)
T ss_pred CHHHHHHHHHHcCCChhhEEEECCC-cCHHHcCC-----CcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHH
Confidence 5566777754 68988999999986 34432 21 11234455554 45677766654 47788999999999
Q ss_pred HHhCCC--eEEEEecCCC----CCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCc
Q 043830 74 MQKNPN--LVTIIVPRHP----QHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 74 ~~~~~~--~~lvivG~~~----~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s 145 (248)
.+..|+ ++|+|+|... ...++++++++++++... |.|++. .+++..+|+.||++ +.||
T Consensus 245 ~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~-------------v~~~g~~~~~~~~~~l~~ad~~-v~ps 310 (405)
T TIGR03449 245 LDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADR-------------VRFLPPRPPEELVHVYRAADVV-AVPS 310 (405)
T ss_pred HhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCce-------------EEECCCCCHHHHHHHHHhCCEE-EECC
Confidence 887777 9999999521 233678888888888643 444443 36899999999995 5678
Q ss_pred cCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 043830 146 FLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 146 ~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 225 (248)
..|++ |++++|||++|+|||+++.+ +.++.+ .+...|+.+.++|.++++++|.++++|++.+++|++++++.+++
T Consensus 311 ~~E~~-g~~~lEAma~G~Pvi~~~~~-~~~e~i---~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~ 385 (405)
T TIGR03449 311 YNESF-GLVAMEAQACGTPVVAARVG-GLPVAV---ADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAG 385 (405)
T ss_pred CCCCc-ChHHHHHHHcCCCEEEecCC-CcHhhh---ccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 88986 89999999999999997653 555544 23345577777899999999999999999999999999998887
Q ss_pred h-chhHHHHHHHHHHHHhh
Q 043830 226 L-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 226 ~-~~~~~~~~l~~~~~~~~ 243 (248)
+ |+..+++++++|.+++.
T Consensus 386 fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 386 FSWAATADGLLSSYRDALA 404 (405)
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 7 89999999999998764
No 9
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.94 E-value=3.3e-25 Score=200.44 Aligned_cols=213 Identities=15% Similarity=0.094 Sum_probs=162.3
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~ 77 (248)
|+..++.+...|++++|+.|++|+ +|.. +.+.. . . ....+++++++.|+. .|+++.+++|+..+++..
T Consensus 252 s~~~~~~~~~~g~~~~ki~vIpNg-id~~~f~~~~---~--~---~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~ 322 (475)
T cd03813 252 YEGNRERQIEDGADPEKIRVIPNG-IDPERFAPAR---R--A---RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKI 322 (475)
T ss_pred CHHHHHHHHHcCCCHHHeEEeCCC-cCHHHcCCcc---c--c---ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC
Confidence 456677778899999999999996 3443 22110 0 0 011245666665543 478899999999998888
Q ss_pred CCeEEEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 78 PNLVTIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 78 ~~~~lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
|+++++|+|.+++ ..++++++++++++.. +|.|.| ..++.++|+.+|++ +.+|..||+ |++
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~-------------~V~f~G-~~~v~~~l~~aDv~-vlpS~~Eg~-p~~ 386 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLED-------------NVKFTG-FQNVKEYLPKLDVL-VLTSISEGQ-PLV 386 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCC-------------eEEEcC-CccHHHHHHhCCEE-EeCchhhcC-ChH
Confidence 9999999998753 2366788888888864 455555 45899999999995 668888986 999
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHh---cCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh--chh
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQR---LNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSG 229 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~---~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~ 229 (248)
++||||||+|||+++. ++++++++.... ..+|.++.+.|+++|+++|.++++|++.+++|++++++++.++ |+.
T Consensus 387 vlEAma~G~PVVatd~-g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~ 465 (475)
T cd03813 387 ILEAMAAGIPVVATDV-GSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLER 465 (475)
T ss_pred HHHHHHcCCCEEECCC-CChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999754 466665543100 1256888889999999999999999999999999999999876 578
Q ss_pred HHHHHHHHHH
Q 043830 230 IVANVWNLLN 239 (248)
Q Consensus 230 ~~~~~l~~~~ 239 (248)
+++++.++|+
T Consensus 466 ~~~~y~~lY~ 475 (475)
T cd03813 466 MIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHhC
Confidence 8888888773
No 10
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.93 E-value=4.6e-25 Score=204.83 Aligned_cols=218 Identities=13% Similarity=0.059 Sum_probs=161.2
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC-CCeEEEEeCCC--cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA-HRQVWMASSIH--RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~-~~~v~l~~~~~--~~~~~~ll~a~~~l~~ 75 (248)
|+.+++.+.+ +|++++||.|++|+ +|... .+.+.+...+..++...+ +.+++++.++. .|+.+.+|+|+..+.+
T Consensus 466 S~~~~~~l~~~~g~~~~kI~VI~NG-Vd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~ 544 (694)
T PRK15179 466 SQFAAHRYADWLGVDERRIPVVYNG-LAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAA 544 (694)
T ss_pred cHHHHHHHHHHcCCChhHEEEECCC-cCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHH
Confidence 3456666754 79999999999996 35432 211111111112222223 34566555543 4788899999999988
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
+.|+++|+|+|+|+.+ +.++++++++|+.. +|.|.|...+++.+|+.+|+ |+.+|.+||| |+++
T Consensus 545 ~~p~~~LvIvG~G~~~-~~L~~l~~~lgL~~-------------~V~flG~~~dv~~ll~aaDv-~VlpS~~Egf-p~vl 608 (694)
T PRK15179 545 SHPKVRFIMVGGGPLL-ESVREFAQRLGMGE-------------RILFTGLSRRVGYWLTQFNA-FLLLSRFEGL-PNVL 608 (694)
T ss_pred HCcCeEEEEEccCcch-HHHHHHHHHcCCCC-------------cEEEcCCcchHHHHHHhcCE-EEeccccccc-hHHH
Confidence 8899999999998876 78999999998864 56666666789999999999 5668888986 9999
Q ss_pred HHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCC--HHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-Hh-chhHH
Q 043830 156 SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSG--KSELEEALSQLFSDARVLEAQQMAAKQAFC-AL-SSGIV 231 (248)
Q Consensus 156 lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~-~~~~~ 231 (248)
+|||+||+|||+++. ++.+|++. +..+|++++++| +++++++|.+++.+.....+|++++++++. +| |+.++
T Consensus 609 LEAMA~G~PVVat~~-gG~~EiV~---dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~ 684 (694)
T PRK15179 609 IEAQFSGVPVVTTLA-GGAGEAVQ---EGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMI 684 (694)
T ss_pred HHHHHcCCeEEEECC-CChHHHcc---CCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999865 46666543 344568887766 468999998888877777788889998885 55 78999
Q ss_pred HHHHHHHH
Q 043830 232 ANVWNLLN 239 (248)
Q Consensus 232 ~~~l~~~~ 239 (248)
++++++|+
T Consensus 685 ~~~~~lY~ 692 (694)
T PRK15179 685 ASTVRCYQ 692 (694)
T ss_pred HHHHHHhC
Confidence 99999885
No 11
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.93 E-value=7.3e-24 Score=186.59 Aligned_cols=213 Identities=14% Similarity=0.153 Sum_probs=153.9
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+..++.+.+. .+..++.+++|+ +|.. +.+ .....+++.++ +.+++++.|+. .|+++.+++|+..+.
T Consensus 147 S~~~~~~~~~~-~~~~~i~vIpng-vd~~~~~~-----~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~ 219 (380)
T PRK15484 147 SQFLKKFYEER-LPNADISIVPNG-FCLETYQS-----NPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLA 219 (380)
T ss_pred CHHHHHHHHhh-CCCCCEEEecCC-CCHHHcCC-----cchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHH
Confidence 56677777653 567789999986 4543 221 11234455554 45677766653 478889999999998
Q ss_pred HhCCCeEEEEecCCCCC--------HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcC
Q 043830 75 QKNPNLVTIIVPRHPQH--------GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGG 144 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~--------~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~ 144 (248)
++.|+++|+|+|+++.. .+++++++.+++. ++.+.+. .+++..+|+.||+++ .|
T Consensus 220 ~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~---------------~v~~~G~~~~~~l~~~~~~aDv~v-~p 283 (380)
T PRK15484 220 TAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGD---------------RCIMLGGQPPEKMHNYYPLADLVV-VP 283 (380)
T ss_pred HhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCC---------------cEEEeCCCCHHHHHHHHHhCCEEE-eC
Confidence 88899999999987542 1234444444432 3455554 368999999999954 56
Q ss_pred cc-CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceE-EEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 043830 145 SF-LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSV-LQVSGKSELEEALSQLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 145 s~-~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 222 (248)
|. .|+| |++++||||||+|||+++. ++.+|++. +..+|+. +.+.|+++|+++|.++++|+++ .+|++++++.
T Consensus 284 S~~~E~f-~~~~lEAma~G~PVI~s~~-gg~~Eiv~---~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~ 357 (380)
T PRK15484 284 SQVEEAF-CMVAVEAMAAGKPVLASTK-GGITEFVL---EGITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQAKDF 357 (380)
T ss_pred CCCcccc-ccHHHHHHHcCCCEEEeCC-CCcHhhcc---cCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHH
Confidence 75 5886 8999999999999999865 45666543 3345563 4568999999999999999986 6799999987
Q ss_pred HH-Hh-chhHHHHHHHHHHHHh
Q 043830 223 FC-AL-SSGIVANVWNLLNFHV 242 (248)
Q Consensus 223 ~~-~~-~~~~~~~~l~~~~~~~ 242 (248)
+. ++ |+.+++++.++|+..+
T Consensus 358 ~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 358 VFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHhCCHHHHHHHHHHHHHHhc
Confidence 74 44 8899999999887653
No 12
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.93 E-value=3.8e-24 Score=193.64 Aligned_cols=207 Identities=11% Similarity=0.057 Sum_probs=153.3
Q ss_pred CHHHHHHHHH----cCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQL----LEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~----~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+..++.+.. .+.+.++|.++||+..+....+ .. .....++++.|+. .|+++.+|+|+..+.
T Consensus 278 S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~--------~~----~r~~~~il~vGrl~~~Kg~~~li~A~~~l~ 345 (500)
T TIGR02918 278 TDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYP--------EQ----ERKPFSIITASRLAKEKHIDWLVKAVVKAK 345 (500)
T ss_pred CHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCc--------cc----ccCCeEEEEEeccccccCHHHHHHHHHHHH
Confidence 4555665543 4455678999998632211111 00 0123455555543 478999999999998
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
+..|+++|+|+|.|+++ ++++++++++++.. +|.+.|.. ++..+|+.||+ ++.||..||| |++
T Consensus 346 ~~~p~~~l~i~G~G~~~-~~l~~~i~~~~l~~-------------~V~f~G~~-~~~~~~~~adv-~v~pS~~Egf-gl~ 408 (500)
T TIGR02918 346 KSVPELTFDIYGEGGEK-QKLQKIINENQAQD-------------YIHLKGHR-NLSEVYKDYEL-YLSASTSEGF-GLT 408 (500)
T ss_pred hhCCCeEEEEEECchhH-HHHHHHHHHcCCCC-------------eEEEcCCC-CHHHHHHhCCE-EEEcCccccc-cHH
Confidence 88999999999999875 78999999988864 34555543 78999999999 5678999996 999
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC----C----HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS----G----KSELEEALSQLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~----~----~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
++||||||+|||+++..++.+++++ ++.+|+++++. | +++|+++|.+|+ +++.+++|+++|++.++++
T Consensus 409 ~lEAma~G~PVI~~dv~~G~~eiI~---~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 409 LMEAVGSGLGMIGFDVNYGNPTFIE---DNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-NSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred HHHHHHhCCCEEEecCCCCCHHHcc---CCCCEEEEeCCccccchhHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhc
Confidence 9999999999999765435556553 34456887743 2 899999999999 4667999999999988887
Q ss_pred -chhHHHHHHHHHHH
Q 043830 227 -SSGIVANVWNLLNF 240 (248)
Q Consensus 227 -~~~~~~~~l~~~~~ 240 (248)
|+..++++.+++++
T Consensus 485 s~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 485 LTANIIEKWKKLVRE 499 (500)
T ss_pred CHHHHHHHHHHHHhh
Confidence 78888888877765
No 13
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.93 E-value=9e-24 Score=184.30 Aligned_cols=213 Identities=15% Similarity=0.100 Sum_probs=161.3
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+..++.+.+.+.+++++.+++|+ +|... .+. .....+..++ +++++++.|+. .|+++.+++|+..+.
T Consensus 150 s~~~~~~~~~~~~~~~~i~vi~n~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~ 223 (371)
T cd04962 150 SESLRQETYELFDITKEIEVIPNF-VDEDRFRPK-----PDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVR 223 (371)
T ss_pred CHHHHHHHHHhcCCcCCEEEecCC-cCHhhcCCC-----chHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHH
Confidence 566777787766567889999986 34321 111 1123344443 55666665543 478899999999887
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
++ ++++++|+|.++.. +.+++.+.++++.. +|.+.+...++..+|+.||++ +.||..|++ |++
T Consensus 224 ~~-~~~~l~i~G~g~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~~d~~-v~ps~~E~~-~~~ 286 (371)
T cd04962 224 KE-VPARLLLVGDGPER-SPAERLARELGLQD-------------DVLFLGKQDHVEELLSIADLF-LLPSEKESF-GLA 286 (371)
T ss_pred hc-CCceEEEEcCCcCH-HHHHHHHHHcCCCc-------------eEEEecCcccHHHHHHhcCEE-EeCCCcCCC-ccH
Confidence 65 56899999998775 78888888887653 456666667899999999995 567888985 999
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-Hh-chhHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFC-AL-SSGIVA 232 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 232 (248)
++|||++|+|||+++.+ +.++.+ .+...|+++.++|+++++++|..+++|++.+++|++++++++. .+ |+..++
T Consensus 287 ~~EAma~g~PvI~s~~~-~~~e~i---~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 362 (371)
T cd04962 287 ALEAMACGVPVVASNAG-GIPEVV---KHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVP 362 (371)
T ss_pred HHHHHHcCCCEEEeCCC-Cchhhh---cCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999997654 555543 3334567788889999999999999999999999999999854 44 788888
Q ss_pred HHHHHHHH
Q 043830 233 NVWNLLNF 240 (248)
Q Consensus 233 ~~l~~~~~ 240 (248)
++.+.|++
T Consensus 363 ~~~~~y~~ 370 (371)
T cd04962 363 QYEALYRR 370 (371)
T ss_pred HHHHHHHh
Confidence 88888875
No 14
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.92 E-value=9.5e-24 Score=189.18 Aligned_cols=206 Identities=15% Similarity=0.142 Sum_probs=143.1
Q ss_pred CCCCCCeEEcCCccccccc-CCCCCCcc--cHHHHHHhc---CCCeEEEEeCCC--cchHHHHHHHHHHHH--HhCCCeE
Q 043830 12 EASPFTINFSGDLKYVHEY-DESEGDIG--SIEDLKASL---AHRQVWMASSIH--RGEEKVMLAVHKVLM--QKNPNLV 81 (248)
Q Consensus 12 gv~~~kI~v~gn~~~d~~~-~~~~~~~~--~~~~~r~~~---~~~~v~l~~~~~--~~~~~~ll~a~~~l~--~~~~~~~ 81 (248)
|++++||.|++|+ +|... .+...... .....++.+ ++.+++++.|+. .|+++.+|+|+..+. +..+++.
T Consensus 205 ~~~~~ki~vIpnG-vd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~ 283 (439)
T TIGR02472 205 SYQPERMQVIPPG-VDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV 283 (439)
T ss_pred CCCccceEEECCC-cChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE
Confidence 7899999999985 45442 22111111 111112222 245677776653 478999999998642 2224443
Q ss_pred EEEecCCCCC----------HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhC----CEEEEcCc
Q 043830 82 TIIVPRHPQH----------GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLT----PIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~~----------~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~a----d~~~v~~s 145 (248)
+|+|++++. .+++.+++.++++.. +|.|++. .++++.+|+.| |+ |+.||
T Consensus 284 -li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~-------------~V~f~g~~~~~~~~~~~~~a~~~~Dv-~v~pS 348 (439)
T TIGR02472 284 -LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYG-------------KVAYPKHHRPDDVPELYRLAARSRGI-FVNPA 348 (439)
T ss_pred -EEeCCccccccccHHHHHHHHHHHHHHHHcCCCc-------------eEEecCCCCHHHHHHHHHHHhhcCCE-Eeccc
Confidence 467876642 112344566777754 3455552 46899999987 88 67889
Q ss_pred cCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 043830 146 FLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 146 ~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 225 (248)
..|+| |++++||||||+|||+++. ++.+|++. +..+|+++++.|+++|+++|.++++|++.+++|++++++++.+
T Consensus 349 ~~E~f-g~~~lEAma~G~PvV~s~~-gg~~eiv~---~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 423 (439)
T TIGR02472 349 LTEPF-GLTLLEAAACGLPIVATDD-GGPRDIIA---NCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVRR 423 (439)
T ss_pred ccCCc-ccHHHHHHHhCCCEEEeCC-CCcHHHhc---CCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 99996 9999999999999999865 46666553 3345688888999999999999999999999999999998854
Q ss_pred -h-chhHHHHHHHHH
Q 043830 226 -L-SSGIVANVWNLL 238 (248)
Q Consensus 226 -~-~~~~~~~~l~~~ 238 (248)
+ |+.++.++++++
T Consensus 424 ~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 424 HYSWDAHVEKYLRIL 438 (439)
T ss_pred hCCHHHHHHHHHHHh
Confidence 4 777777777665
No 15
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.92 E-value=1.7e-23 Score=185.31 Aligned_cols=216 Identities=12% Similarity=0.067 Sum_probs=161.9
Q ss_pred CHHHHHHH-HHcCCCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHh
Q 043830 1 STLQAIRF-QLLEASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQK 76 (248)
Q Consensus 1 s~~~~~~l-~~~gv~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~ 76 (248)
|+..++.+ ...+++++|+.+++|+ +|.. +.+.. .. ...+.+++++.|+. .|+.+.+++|++.+.++
T Consensus 152 s~~~~~~~~~~~~~~~~k~~vi~ng-vd~~~f~~~~---~~------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~ 221 (398)
T cd03796 152 SHTSKENTVLRASLDPERVSVIPNA-VDSSDFTPDP---SK------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKK 221 (398)
T ss_pred cHhHhhHHHHHhCCChhhEEEEcCc-cCHHHcCCCc---cc------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhh
Confidence 34455544 4568888999999985 4543 22211 00 01245666665543 47888999999999888
Q ss_pred CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 77 ~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
.|+++|+|+|+++.. +.++++++++++.+. |.+.|. .+++..+|+.||++ +.+|..|++ |++
T Consensus 222 ~~~~~l~i~G~g~~~-~~l~~~~~~~~l~~~-------------v~~~G~~~~~~~~~~l~~ad~~-v~pS~~E~~-g~~ 285 (398)
T cd03796 222 HPNVRFIIGGDGPKR-ILLEEMREKYNLQDR-------------VELLGAVPHERVRDVLVQGHIF-LNTSLTEAF-CIA 285 (398)
T ss_pred CCCEEEEEEeCCchH-HHHHHHHHHhCCCCe-------------EEEeCCCCHHHHHHHHHhCCEE-EeCChhhcc-CHH
Confidence 899999999998865 789999999888643 445553 36899999999995 568888986 899
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh--chhHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSGIVA 232 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~ 232 (248)
++||||||+|||+++.+ +.+|++. .+. .++...|.++|+++|.++++++..+..+++++++.+.+. |+..++
T Consensus 286 ~~EAma~G~PVI~s~~g-g~~e~i~----~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 359 (398)
T cd03796 286 IVEAASCGLLVVSTRVG-GIPEVLP----PDM-ILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAK 359 (398)
T ss_pred HHHHHHcCCCEEECCCC-Cchhhee----CCc-eeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHH
Confidence 99999999999987654 5666442 332 344556999999999999998887777888888877554 899999
Q ss_pred HHHHHHHHHhhhhhcC
Q 043830 233 NVWNLLNFHVFRRALC 248 (248)
Q Consensus 233 ~~l~~~~~~~~~~~~~ 248 (248)
++++.|++++.....|
T Consensus 360 ~~~~~y~~l~~~~~~~ 375 (398)
T cd03796 360 RTEKVYDRILQTPNLS 375 (398)
T ss_pred HHHHHHHHHhcCCCcc
Confidence 9999999998766544
No 16
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.92 E-value=1.2e-23 Score=183.29 Aligned_cols=203 Identities=16% Similarity=0.129 Sum_probs=152.0
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCC--CcchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSI--HRGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~--~~~~~~~ll~a~~~l~~~~ 77 (248)
|+.+++.+.+.|+++++|.+++|+ .|... .+.. .-.+.+++++.|+ ..|+.+.+++|+..+.++.
T Consensus 150 s~~~~~~~~~~~~~~~~i~vi~~g-~d~~~~~~~~-----------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~ 217 (367)
T cd05844 150 SQFIRDRLLALGFPPEKVHVHPIG-VDTAKFTPAT-----------PARRPPRILFVGRFVEKKGPLLLLEAFARLARRV 217 (367)
T ss_pred CHHHHHHHHHcCCCHHHeEEecCC-CCHHhcCCCC-----------CCCCCcEEEEEEeeccccChHHHHHHHHHHHHhC
Confidence 677889998889999999999985 34432 1110 0012344554443 2477889999999998888
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCcc------CCC
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSF------LPG 149 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~------~e~ 149 (248)
++++|+|+|+++.. ++++++++++|+... |.|.+.. +++..+|+.||++ +.||. .||
T Consensus 218 ~~~~l~ivG~g~~~-~~~~~~~~~~~~~~~-------------v~~~g~~~~~~l~~~~~~ad~~-v~ps~~~~~~~~E~ 282 (367)
T cd05844 218 PEVRLVIIGDGPLL-AALEALARALGLGGR-------------VTFLGAQPHAEVRELMRRARIF-LQPSVTAPSGDAEG 282 (367)
T ss_pred CCeEEEEEeCchHH-HHHHHHHHHcCCCCe-------------EEECCCCCHHHHHHHHHhCCEE-EECcccCCCCCccC
Confidence 99999999998765 788888888877643 4444432 6899999999995 55665 477
Q ss_pred CCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH-h-c
Q 043830 150 LAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA-L-S 227 (248)
Q Consensus 150 ~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~-~-~ 227 (248)
+ |++++|||+||+|||+++.+ +..+.+ .+.++|+++...|+++++++|.++++|++++++|+.++++++.+ + |
T Consensus 283 ~-~~~~~EA~a~G~PvI~s~~~-~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~ 357 (367)
T cd05844 283 L-PVVLLEAQASGVPVVATRHG-GIPEAV---EDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDL 357 (367)
T ss_pred C-chHHHHHHHcCCCEEEeCCC-Cchhhe---ecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCH
Confidence 5 89999999999999998765 444433 34455677777899999999999999999999999999998854 3 5
Q ss_pred hhHHHHHH
Q 043830 228 SGIVANVW 235 (248)
Q Consensus 228 ~~~~~~~l 235 (248)
+..++++.
T Consensus 358 ~~~~~~l~ 365 (367)
T cd05844 358 RRQTAKLE 365 (367)
T ss_pred HHHHHHHh
Confidence 65555543
No 17
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.92 E-value=2.1e-23 Score=197.98 Aligned_cols=175 Identities=13% Similarity=0.153 Sum_probs=139.7
Q ss_pred CCeEEEEeCCC--cchHHHHHHHHHHHHHh--CCCeEEEEecCCCCC----------HHHHHHHHHhcCCceEEecccCC
Q 043830 49 HRQVWMASSIH--RGEEKVMLAVHKVLMQK--NPNLVTIIVPRHPQH----------GKEIAQKLQKEGEVVALRSRHEK 114 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~ll~a~~~l~~~--~~~~~lvivG~~~~~----------~~~l~~~~~~~~l~~~~~~~~~~ 114 (248)
+++++++.|+. .|++..||+||..+.+. .++++ +|+|.++.. ..++++++.++++...
T Consensus 478 dkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~------- 549 (1050)
T TIGR02468 478 RKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQ------- 549 (1050)
T ss_pred CCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCe-------
Confidence 66777777654 48899999999988643 35665 566765431 2457778888888644
Q ss_pred CCCCccEEEEcC--hhHHHHHHhhC----CEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCce
Q 043830 115 LMPRTNVYVVDT--LGELRQLYKLT----PIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKS 188 (248)
Q Consensus 115 ~~~~~~v~~~~~--~~~l~~~y~~a----d~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~ 188 (248)
|.|++. ..+++.+|+.| |+ ||.||++|+| |++++||||||+|||+++. ++.++++.. ..+|+
T Consensus 550 ------V~FlG~v~~edvp~lYr~Ad~s~DV-FV~PS~~EgF-GLvlLEAMAcGlPVVASdv-GG~~EII~~---g~nGl 617 (1050)
T TIGR02468 550 ------VAYPKHHKQSDVPDIYRLAAKTKGV-FINPAFIEPF-GLTLIEAAAHGLPMVATKN-GGPVDIHRV---LDNGL 617 (1050)
T ss_pred ------EEecCCCCHHHHHHHHHHhhhcCCe-eeCCcccCCC-CHHHHHHHHhCCCEEEeCC-CCcHHHhcc---CCcEE
Confidence 445442 46899999988 57 7889999997 9999999999999999865 466665543 34568
Q ss_pred EEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhh
Q 043830 189 VLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 189 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 243 (248)
++.+.|+++|+++|.++++|++++++|++++++++.+| |+.+++++++.|..++.
T Consensus 618 LVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~~ 673 (1050)
T TIGR02468 618 LVDPHDQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCRP 673 (1050)
T ss_pred EECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999888 89999999999987754
No 18
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.92 E-value=3.3e-23 Score=179.43 Aligned_cols=212 Identities=12% Similarity=0.114 Sum_probs=159.2
Q ss_pred CHHHHHHHHHcC-CCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLE-ASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~~g-v~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+..++.+...+ ++++++.+++|+ +|... .+ +......++++++ +++++++.|+. .|+++.+++++..+
T Consensus 138 s~~~~~~~~~~~~~~~~~~~~i~ng-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l 213 (360)
T cd04951 138 SKEALDYFIASKAFNANKSFVVYNG-IDTDRFRK---DPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKL 213 (360)
T ss_pred cHHHHHHHHhccCCCcccEEEEccc-cchhhcCc---chHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHH
Confidence 456677777765 788999999985 44432 21 1122345566554 45667766543 47788999999999
Q ss_pred HHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 74 MQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 74 ~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
.++.|+++|+|+|+|+.. +++++.+.++++. .+|.+.++..++..+|+.||+ ++.+|..|++ |+
T Consensus 214 ~~~~~~~~l~i~G~g~~~-~~~~~~~~~~~~~-------------~~v~~~g~~~~~~~~~~~ad~-~v~~s~~e~~-~~ 277 (360)
T cd04951 214 LSDYLDIKLLIAGDGPLR-ATLERLIKALGLS-------------NRVKLLGLRDDIAAYYNAADL-FVLSSAWEGF-GL 277 (360)
T ss_pred HhhCCCeEEEEEcCCCcH-HHHHHHHHhcCCC-------------CcEEEecccccHHHHHHhhce-EEecccccCC-Ch
Confidence 888899999999998876 7888888877664 356777777899999999999 5668888885 89
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh-hCHHHHHHHHHHHHHHH-HHh-chhH
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF-SDARVLEAQQMAAKQAF-CAL-SSGI 230 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~-~~~-~~~~ 230 (248)
+++|||++|+|||+++.+ +..+.+ .+ .|..+.++|+++++++|.+++ .++..++.++++ ++.+ +.+ |+..
T Consensus 278 ~~~Ea~a~G~PvI~~~~~-~~~e~i---~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~ 350 (360)
T cd04951 278 VVAEAMACELPVVATDAG-GVREVV---GD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSI 350 (360)
T ss_pred HHHHHHHcCCCEEEecCC-ChhhEe---cC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHH
Confidence 999999999999987653 444433 22 347888899999999999999 567777778777 5555 444 7888
Q ss_pred HHHHHHHHH
Q 043830 231 VANVWNLLN 239 (248)
Q Consensus 231 ~~~~l~~~~ 239 (248)
++++.++|.
T Consensus 351 ~~~~~~~y~ 359 (360)
T cd04951 351 VQQWLTLYT 359 (360)
T ss_pred HHHHHHHhh
Confidence 888888875
No 19
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.92 E-value=8.9e-23 Score=175.44 Aligned_cols=212 Identities=17% Similarity=0.162 Sum_probs=159.7
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+..++.+...|++.+++.+++|+ +|... .+. ......++++++ +.+++++.|+. .|+.+.+++|+..+.
T Consensus 144 s~~~~~~~~~~~~~~~~~~vi~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365)
T cd03807 144 SAAAAEYHQAIGYPPKKIVVIPNG-VDTERFSPD---LDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLL 219 (365)
T ss_pred cHHHHHHHHHcCCChhheeEeCCC-cCHHhcCCc---ccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHH
Confidence 566788888889999999999985 45432 111 112234444553 44566665543 477889999999998
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHH-hcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQ-KEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
++.++++++|+|.++.. ..++.... +.++.. +|.+.++..++..+|+.||++ +.||..|++ |.
T Consensus 220 ~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~adi~-v~ps~~e~~-~~ 283 (365)
T cd03807 220 KKFPNARLLLVGDGPDR-ANLELLALKELGLED-------------KVILLGERSDVPALLNALDVF-VLSSLSEGF-PN 283 (365)
T ss_pred HhCCCeEEEEecCCcch-hHHHHHHHHhcCCCc-------------eEEEccccccHHHHHHhCCEE-EeCCccccC-Cc
Confidence 88899999999998765 55666655 665543 455666667899999999995 567777885 99
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh--chhHH
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSGIV 231 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~ 231 (248)
+++|||+||+|||+++.+ +..+.+. + .|..+..+|+++++++|..+++|++.++++++++++++.+. |+..+
T Consensus 284 ~~~Ea~a~g~PvI~~~~~-~~~e~~~---~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (365)
T cd03807 284 VLLEAMACGLPVVATDVG-DNAELVG---D--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMV 357 (365)
T ss_pred HHHHHHhcCCCEEEcCCC-ChHHHhh---c--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999997654 4544432 2 44788889999999999999999999999999999998664 67888
Q ss_pred HHHHHHH
Q 043830 232 ANVWNLL 238 (248)
Q Consensus 232 ~~~l~~~ 238 (248)
+++.++|
T Consensus 358 ~~~~~~y 364 (365)
T cd03807 358 EAYEELY 364 (365)
T ss_pred HHHHHHh
Confidence 8887776
No 20
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.92 E-value=4.3e-23 Score=180.97 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=149.2
Q ss_pred HHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeE
Q 043830 8 FQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLV 81 (248)
Q Consensus 8 l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~ 81 (248)
+...+++.+++ +++|+ +|... .....++.....++++++ +++++++.|+. .|+++.+++|+..+.+..|+++
T Consensus 146 ~~~~~~~~~~~-vipng-vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~ 223 (372)
T cd03792 146 YVPPQVPPRKV-IIPPS-IDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQ 223 (372)
T ss_pred hcCCCCCCceE-EeCCC-CCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCE
Confidence 33456776666 88875 45431 000112233445666664 56777776654 4788999999999887778999
Q ss_pred EEEecCCCCC---HHH-HHHHHHhcCCceEEecccCCCCCCccEEEEc----ChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 82 TIIVPRHPQH---GKE-IAQKLQKEGEVVALRSRHEKLMPRTNVYVVD----TLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 82 lvivG~~~~~---~~~-l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~----~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
|+|+|+++.. ..+ ++++.+..++.. +|.+.+ +..++..+|+.||+ |+.+|..||| |+
T Consensus 224 l~i~G~g~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~~ad~-~v~~s~~Eg~-g~ 288 (372)
T cd03792 224 LVLVGSGATDDPEGWIVYEEVLEYAEGDP-------------DIHVLTLPPVSDLEVNALQRASTV-VLQKSIREGF-GL 288 (372)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHHhCCCC-------------CeEEEecCCCCHHHHHHHHHhCeE-EEeCCCccCC-CH
Confidence 9999998652 122 334333444432 344443 23689999999999 5678989996 99
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-Hh-chhHH
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFC-AL-SSGIV 231 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~-~~~~~ 231 (248)
+++||||||+|||+++.+ +.++.+ .++.. ++.+.+.++++.+|.++++|++++++|++++++++. ++ |+..+
T Consensus 289 ~~lEA~a~G~Pvv~s~~~-~~~~~i---~~~~~--g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~ 362 (372)
T cd03792 289 TVTEALWKGKPVIAGPVG-GIPLQI---EDGET--GFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHL 362 (372)
T ss_pred HHHHHHHcCCCEEEcCCC-Cchhhc---ccCCc--eEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 999999999999998654 444433 33343 344567889999999999999999999999999875 55 89999
Q ss_pred HHHHHHHHH
Q 043830 232 ANVWNLLNF 240 (248)
Q Consensus 232 ~~~l~~~~~ 240 (248)
++++++|++
T Consensus 363 ~~~~~~~~~ 371 (372)
T cd03792 363 KDYLYLISK 371 (372)
T ss_pred HHHHHHHHh
Confidence 999999876
No 21
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.92 E-value=5.4e-23 Score=183.07 Aligned_cols=214 Identities=14% Similarity=0.062 Sum_probs=149.4
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHH---------------hc-CCC-eEEEEeCCC--cc
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKA---------------SL-AHR-QVWMASSIH--RG 61 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~---------------~~-~~~-~v~l~~~~~--~~ 61 (248)
|+.+++.+.+.|++++||.|++|+. +..+.|.+. ......+.. .+ .++ .++++.++. .|
T Consensus 168 S~~~~~~l~~~~~~~~ki~vI~Ng~-~~~f~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K 245 (415)
T cd03816 168 TKAMKEDLQQFNNWKIRATVLYDRP-PEQFRPLPL-EEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDE 245 (415)
T ss_pred CHHHHHHHHhhhccCCCeeecCCCC-HHHceeCcH-HHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCC
Confidence 6788888988899999999999852 222222111 011111111 01 122 345554443 47
Q ss_pred hHHHHHHHHHHHHHh------CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh
Q 043830 62 EEKVMLAVHKVLMQK------NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK 135 (248)
Q Consensus 62 ~~~~ll~a~~~l~~~------~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~ 135 (248)
+++.+++|+..+.+. .|+++|+|+|+|+.+ ++++++++++++.+.+++.+.. +.++++.+|+
T Consensus 246 ~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~-~~l~~~~~~~~l~~~~~~~g~~-----------~~~~~~~~l~ 313 (415)
T cd03816 246 DFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLK-EKYLERIKELKLKKVTIRTPWL-----------SAEDYPKLLA 313 (415)
T ss_pred CHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccH-HHHHHHHHHcCCCcEEEEcCcC-----------CHHHHHHHHH
Confidence 889999999998752 478999999999876 8999999999886433322211 3479999999
Q ss_pred hCCEEEEc--CccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC---HH
Q 043830 136 LTPIAVIG--GSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD---AR 210 (248)
Q Consensus 136 ~ad~~~v~--~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~---~~ 210 (248)
.||++++. ++..+++ |++++||||||+|||+++.+ +.+|+++ ++.+|+++ +|+++|+++|..|++| ++
T Consensus 314 ~aDv~v~~~~~~~~~~~-p~~~~Eama~G~PVI~s~~~-~~~eiv~---~~~~G~lv--~d~~~la~~i~~ll~~~~~~~ 386 (415)
T cd03816 314 SADLGVSLHTSSSGLDL-PMKVVDMFGCGLPVCALDFK-CIDELVK---HGENGLVF--GDSEELAEQLIDLLSNFPNRG 386 (415)
T ss_pred hCCEEEEccccccccCC-cHHHHHHHHcCCCEEEeCCC-CHHHHhc---CCCCEEEE--CCHHHHHHHHHHHHhcCCCHH
Confidence 99996542 1223454 78899999999999997643 5555543 44455654 6999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHH
Q 043830 211 VLEAQQMAAKQAFCALSSGIVANVW 235 (248)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~l 235 (248)
.+++|+++++++.+..|.....+.+
T Consensus 387 ~~~~m~~~~~~~~~~~~~~~~~~~~ 411 (415)
T cd03816 387 KLNSLKKGAQEESELRWDENWDRVV 411 (415)
T ss_pred HHHHHHHHHHHhhhcCHHHHHHHHh
Confidence 9999999999988655766665554
No 22
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.91 E-value=2e-22 Score=177.18 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=156.4
Q ss_pred CHHHHHHHHHc--CCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHH
Q 043830 1 STLQAIRFQLL--EASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKV 72 (248)
Q Consensus 1 s~~~~~~l~~~--gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~ 72 (248)
|+..++.+.+. |++++++.+++|+ +|... .+ .....++.+++ +.+++++.|+. .|+++.+++|++.
T Consensus 152 S~~~~~~~~~~~~~~~~~~i~vi~ng-~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~ 225 (388)
T TIGR02149 152 SGGMREDILKYYPDLDPEKVHVIYNG-IDTKEYKP-----DDGNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHY 225 (388)
T ss_pred cHHHHHHHHHHcCCCCcceEEEecCC-CChhhcCC-----CchHHHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHH
Confidence 56677777664 7888899999985 44432 21 12234555553 55677776653 4788999999988
Q ss_pred HHHhCCCeEEEEecCCCCC---HHHHHHHHHhcCCceEEecccCCCCCCccEE-EEc--ChhHHHHHHhhCCEEEEcCcc
Q 043830 73 LMQKNPNLVTIIVPRHPQH---GKEIAQKLQKEGEVVALRSRHEKLMPRTNVY-VVD--TLGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 73 l~~~~~~~~lvivG~~~~~---~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~--~~~~l~~~y~~ad~~~v~~s~ 146 (248)
+. ++++++++|+++.. .+++++.+.+++... .+|. +.+ +.+++..+|+.||++ +.+|.
T Consensus 226 l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~aDv~-v~ps~ 289 (388)
T TIGR02149 226 IP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNR------------TGIIWINKMLPKEELVELLSNAEVF-VCPSI 289 (388)
T ss_pred Hh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhcccc------------CceEEecCCCCHHHHHHHHHhCCEE-EeCCc
Confidence 74 46788888876553 234555555554321 1233 333 357899999999994 56788
Q ss_pred CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCH------HHHHHHHHHhhhCHHHHHHHHHHHH
Q 043830 147 LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGK------SELEEALSQLFSDARVLEAQQMAAK 220 (248)
Q Consensus 147 ~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~------~~l~~~i~~ll~~~~~~~~~~~~~~ 220 (248)
.|++ |.+++|||+||+|||+++.+ +.++.+. +..+|+++..+|. ++|+++|.++++|++.+++|+++++
T Consensus 290 ~e~~-g~~~lEA~a~G~PvI~s~~~-~~~e~i~---~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~ 364 (388)
T TIGR02149 290 YEPL-GIVNLEAMACGTPVVASATG-GIPEVVV---DGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGR 364 (388)
T ss_pred cCCC-ChHHHHHHHcCCCEEEeCCC-CHHHHhh---CCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8986 89999999999999998654 5655443 3445688878888 9999999999999999999999999
Q ss_pred HHHH-Hh-chhHHHHHHHHHHHHh
Q 043830 221 QAFC-AL-SSGIVANVWNLLNFHV 242 (248)
Q Consensus 221 ~~~~-~~-~~~~~~~~l~~~~~~~ 242 (248)
+.+. ++ |+.+++++++.|++++
T Consensus 365 ~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 365 KRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhC
Confidence 9885 45 8999999999998764
No 23
>PLN02949 transferase, transferring glycosyl groups
Probab=99.91 E-value=4.2e-23 Score=185.23 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=156.1
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhcCCCeEEEEeCC--CcchHHHHHHHHHHHHHh-
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASLAHRQVWMASSI--HRGEEKVMLAVHKVLMQK- 76 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~~~~~v~l~~~~--~~~~~~~ll~a~~~l~~~- 76 (248)
|+.+++.+.+....++++.+++|+. |.. ....+ . . ...+.+++++.++ .+|+++.+|+|+..+.++
T Consensus 228 S~~t~~~l~~~~~~~~~i~vvyp~v-d~~~~~~~~---~--~----~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~ 297 (463)
T PLN02949 228 SSWTKSHIEALWRIPERIKRVYPPC-DTSGLQALP---L--E----RSEDPPYIISVAQFRPEKAHALQLEAFALALEKL 297 (463)
T ss_pred CHHHHHHHHHHcCCCCCeEEEcCCC-CHHHcccCC---c--c----ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhc
Confidence 6778888877543346788888652 321 11000 0 0 0123345555444 357889999999987653
Q ss_pred ---CCCeEEEEecCCCC-----CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCcc
Q 043830 77 ---NPNLVTIIVPRHPQ-----HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 77 ---~~~~~lvivG~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~ 146 (248)
.|+++|+|+|+++. +.++++++++++++.+. |.|.+. .+++..+|+.||+ ++.+|.
T Consensus 298 ~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~-------------V~f~g~v~~~el~~ll~~a~~-~v~~s~ 363 (463)
T PLN02949 298 DADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGD-------------VEFHKNVSYRDLVRLLGGAVA-GLHSMI 363 (463)
T ss_pred cccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCc-------------EEEeCCCCHHHHHHHHHhCcE-EEeCCc
Confidence 47899999998642 23578888999988743 444443 3689999999998 567888
Q ss_pred CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHH
Q 043830 147 LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 147 ~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~ 225 (248)
.|+| |++++||||+|+|||+++.+|...+++.......+|+ .+.|+++++++|.++++ +++.+++|++++++++.+
T Consensus 364 ~E~F-GivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~--l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 364 DEHF-GISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGF--LATTVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred cCCC-ChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccc--cCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 8996 9999999999999999876543334332211112233 45799999999999998 688999999999999988
Q ss_pred h-chhHHHHHHHHHHHHhhhh
Q 043830 226 L-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 226 ~-~~~~~~~~l~~~~~~~~~~ 245 (248)
| ++...+++.+.|.+++.+-
T Consensus 441 FS~e~~~~~~~~~i~~l~~~~ 461 (463)
T PLN02949 441 FSEQRFNEDFKDAIRPILNSA 461 (463)
T ss_pred cCHHHHHHHHHHHHHHHHhhh
Confidence 8 7999999999999987753
No 24
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.91 E-value=6e-23 Score=179.38 Aligned_cols=210 Identities=10% Similarity=-0.020 Sum_probs=151.4
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccc-c-CCCCCCcccHHHHHHhcCCCeEEEEeCC--C--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHE-Y-DESEGDIGSIEDLKASLAHRQVWMASSI--H--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~-~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~--~--~~~~~~ll~a~~~l~ 74 (248)
|+.+++.+...|++++|+.+++|+ +|.+ . .+.+ ...+++++++.|+ . .|+++.+++|+.++.
T Consensus 141 S~~~~~~~~~~~~~~~ki~vi~N~-id~~~~~~~~~-----------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~ 208 (359)
T PRK09922 141 SSGIKEQMMARGISAQRISVIYNP-VEIKTIIIPPP-----------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT 208 (359)
T ss_pred CHHHHHHHHHcCCCHHHEEEEcCC-CCHHHccCCCc-----------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC
Confidence 677889998899999999999986 3422 1 1110 0023455655443 2 267788999987763
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
++++|+|+|+|+++ +.+++.++++++...+++.|... +...++..+|+.+|++ +.+|..||| |.+
T Consensus 209 ---~~~~l~ivG~g~~~-~~l~~~~~~~~l~~~v~f~G~~~---------~~~~~~~~~~~~~d~~-v~~s~~Egf-~~~ 273 (359)
T PRK09922 209 ---GEWQLHIIGDGSDF-EKCKAYSRELGIEQRIIWHGWQS---------QPWEVVQQKIKNVSAL-LLTSKFEGF-PMT 273 (359)
T ss_pred ---CCeEEEEEeCCccH-HHHHHHHHHcCCCCeEEEecccC---------CcHHHHHHHHhcCcEE-EECCcccCc-ChH
Confidence 47999999999875 78999999998875444443211 1235789999999995 568888986 999
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHH--HHHHHHHHHHHHHHhchhHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARV--LEAQQMAAKQAFCALSSGIVA 232 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~ 232 (248)
++||||||+|||+++..++..+++. +..+|.++.++|+++++++|.++++|++. ...++++++++.. +...+
T Consensus 274 ~lEAma~G~Pvv~s~~~~g~~eiv~---~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~ 347 (359)
T PRK09922 274 LLEAMSYGIPCISSDCMSGPRDIIK---PGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYE---VLYFK 347 (359)
T ss_pred HHHHHHcCCCEEEeCCCCChHHHcc---CCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH---HHHHH
Confidence 9999999999999862445655443 34456888889999999999999999984 5566666666544 46667
Q ss_pred HHHHHHHHHhh
Q 043830 233 NVWNLLNFHVF 243 (248)
Q Consensus 233 ~~l~~~~~~~~ 243 (248)
+..++|...++
T Consensus 348 ~~~~~~~~~~~ 358 (359)
T PRK09922 348 NLNNALFSKLQ 358 (359)
T ss_pred HHHHHHHHHhc
Confidence 77777776543
No 25
>PRK14099 glycogen synthase; Provisional
Probab=99.90 E-value=9.9e-23 Score=184.22 Aligned_cols=223 Identities=13% Similarity=0.027 Sum_probs=157.9
Q ss_pred CHHHHHHHHHc----C------CCCCCeEEcCCcccccc-cCCCCCCc---------------ccHHHHHHhcC-----C
Q 043830 1 STLQAIRFQLL----E------ASPFTINFSGDLKYVHE-YDESEGDI---------------GSIEDLKASLA-----H 49 (248)
Q Consensus 1 s~~~~~~l~~~----g------v~~~kI~v~gn~~~d~~-~~~~~~~~---------------~~~~~~r~~~~-----~ 49 (248)
|+..++.+.+. | .+++|+.+++|+ +|.. ..|.. ++ .....++++++ +
T Consensus 217 S~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NG-ID~~~f~p~~-~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~ 294 (485)
T PRK14099 217 SPTYALEIQGPEAGMGLDGLLRQRADRLSGILNG-IDTAVWNPAT-DELIAATYDVETLAARAANKAALQARFGLDPDPD 294 (485)
T ss_pred ChhHHHHHhcccCCcChHHHHHhhCCCeEEEecC-Cchhhccccc-cchhhhcCChhHHHhHHHhHHHHHHHcCCCcccC
Confidence 66777777642 2 247899999985 4544 22211 10 01245666664 2
Q ss_pred CeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC
Q 043830 50 RQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT 126 (248)
Q Consensus 50 ~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~ 126 (248)
.+++.+.|+. .|+++.+++|+..+.+ .+++|+|+|+|+. ..+++++++++++- ..+.+++.
T Consensus 295 ~~li~~VgRL~~~KG~d~Li~A~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~--------------~v~~~~G~ 358 (485)
T PRK14099 295 ALLLGVISRLSWQKGLDLLLEALPTLLG--EGAQLALLGSGDAELEARFRAAAQAYPG--------------QIGVVIGY 358 (485)
T ss_pred CcEEEEEecCCccccHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHHHHCCC--------------CEEEEeCC
Confidence 4566555543 4889999999998864 3689999999864 22566666655421 11246666
Q ss_pred hhHHHHHH-hhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh------cCCceEEEcCCHHHHH
Q 043830 127 LGELRQLY-KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR------LNPKSVLQVSGKSELE 199 (248)
Q Consensus 127 ~~~l~~~y-~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~l~ 199 (248)
.+++..+| +.||+ |+.||..|+| |++.+|||+||+|+|+++ +++.++.+....+ .++|+++.+.|+++|+
T Consensus 359 ~~~l~~~~~a~aDi-fv~PS~~E~f-Gl~~lEAma~G~ppVvs~-~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La 435 (485)
T PRK14099 359 DEALAHLIQAGADA-LLVPSRFEPC-GLTQLCALRYGAVPVVAR-VGGLADTVVDANEMAIATGVATGVQFSPVTADALA 435 (485)
T ss_pred CHHHHHHHHhcCCE-EEECCccCCC-cHHHHHHHHCCCCcEEeC-CCCccceeecccccccccCCCceEEeCCCCHHHHH
Confidence 67898877 57999 5678999986 999999999998777764 4566664432210 1457888899999999
Q ss_pred HHHHH---hhhCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhhhhh
Q 043830 200 EALSQ---LFSDARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVFRRA 246 (248)
Q Consensus 200 ~~i~~---ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 246 (248)
++|.+ +++|++.+++|+++++. .++ |+.++++++++|++++..+-
T Consensus 436 ~ai~~a~~l~~d~~~~~~l~~~~~~--~~fSw~~~a~~y~~lY~~l~~~~~ 484 (485)
T PRK14099 436 AALRKTAALFADPVAWRRLQRNGMT--TDVSWRNPAQHYAALYRSLVAERR 484 (485)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhh--hcCChHHHHHHHHHHHHHHHhhhC
Confidence 99997 78899999999999863 456 89999999999999987654
No 26
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.90 E-value=5.1e-22 Score=171.96 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=149.5
Q ss_pred CHHHHHHHH-HcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQ-LLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~-~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+.+++.+. ..|++.+|+.+++|+ +|... .+..........+++.++ +.+++++.|+. .|+.+.+++++..+
T Consensus 132 s~~~~~~~~~~~~~~~~k~~~i~ng-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l 210 (355)
T cd03819 132 SNFIADHIRENYGVDPDRIRVIPRG-VDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARL 210 (355)
T ss_pred CHHHHHHHHHhcCCChhhEEEecCC-ccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHH
Confidence 567788887 579999999999985 45432 211111111223455543 45566666543 47788999999999
Q ss_pred HHhCCCeEEEEecCCCCC---HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCc-cCCC
Q 043830 74 MQKNPNLVTIIVPRHPQH---GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGS-FLPG 149 (248)
Q Consensus 74 ~~~~~~~~lvivG~~~~~---~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s-~~e~ 149 (248)
++..++++++|+|.++.. .+.+.+.+.++++.. +|.+.+...++..+|+.||++ +.+| ..|+
T Consensus 211 ~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~l~~ad~~-i~ps~~~e~ 276 (355)
T cd03819 211 KKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQD-------------RVTFVGHCSDMPAAYALADIV-VSASTEPEA 276 (355)
T ss_pred HhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcc-------------eEEEcCCcccHHHHHHhCCEE-EecCCCCCC
Confidence 887789999999987653 133455666666542 466667677999999999995 4566 6788
Q ss_pred CCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHh
Q 043830 150 LAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF-SDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 150 ~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~ 226 (248)
+ |.+++|||+||+|||+++. ++..+.+. +...|.++.++|+++++++|..++ .+++.+++|+++|++++...
T Consensus 277 ~-~~~l~EA~a~G~PvI~~~~-~~~~e~i~---~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~ 349 (355)
T cd03819 277 F-GRTAVEAQAMGRPVIASDH-GGARETVR---PGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETL 349 (355)
T ss_pred C-chHHHHHHhcCCCEEEcCC-CCcHHHHh---CCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 5 8999999999999999765 45555443 333568888899999999996555 58999999999999998664
No 27
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.90 E-value=2.3e-22 Score=181.53 Aligned_cols=221 Identities=10% Similarity=-0.008 Sum_probs=155.8
Q ss_pred CHHHHHHHHHc----------CCCCCCeEEcCCccccccc-CCCCC-------C-------cccHHHHHHhcC----CCe
Q 043830 1 STLQAIRFQLL----------EASPFTINFSGDLKYVHEY-DESEG-------D-------IGSIEDLKASLA----HRQ 51 (248)
Q Consensus 1 s~~~~~~l~~~----------gv~~~kI~v~gn~~~d~~~-~~~~~-------~-------~~~~~~~r~~~~----~~~ 51 (248)
|+..++.+... +.+++||.+++|+ +|.+. .|... + ......++++++ +.+
T Consensus 205 S~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NG-id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~ 283 (466)
T PRK00654 205 SPTYAREITTPEFGYGLEGLLRARSGKLSGILNG-IDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAP 283 (466)
T ss_pred CHHHHHHhccccCCcChHHHHHhcccCceEecCC-CCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCc
Confidence 56667776542 3467899999985 45442 22110 0 011345666665 456
Q ss_pred EEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 52 VWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 52 v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
++++.|+. .|+++.+++|+..+.+. +++|+|+|+|+. ..+++++++++++... +++.+...
T Consensus 284 ~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v--------------~~~~g~~~ 347 (466)
T PRK00654 284 LFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKV--------------GVQIGYDE 347 (466)
T ss_pred EEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcE--------------EEEEeCCH
Confidence 77776654 47899999999998653 789999998764 2356777777765321 12233333
Q ss_pred -HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHH---HhcCCceEEEcCCHHHHHHHHHH
Q 043830 129 -ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAM---QRLNPKSVLQVSGKSELEEALSQ 204 (248)
Q Consensus 129 -~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~---~~~g~g~~~~~~~~~~l~~~i~~ 204 (248)
.++.+|+.||+ ++.||..|++ |++++|||+||+|+|+++. ++.++.+... .+.++|+++.+.|+++|+++|.+
T Consensus 348 ~~~~~~~~~aDv-~v~PS~~E~~-gl~~lEAma~G~p~V~~~~-gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~ 424 (466)
T PRK00654 348 ALAHRIYAGADM-FLMPSRFEPC-GLTQLYALRYGTLPIVRRT-GGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRR 424 (466)
T ss_pred HHHHHHHhhCCE-EEeCCCCCCc-hHHHHHHHHCCCCEEEeCC-CCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHH
Confidence 45789999999 5668999986 9999999999999998754 4666644221 01156788889999999999999
Q ss_pred hhh---CHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhh
Q 043830 205 LFS---DARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 205 ll~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 243 (248)
+++ |++.+++|++++.+ ..+ |+.++++++++|++++.
T Consensus 425 ~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 425 ALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHHhh
Confidence 886 77888888887753 456 89999999999998875
No 28
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.90 E-value=2e-22 Score=178.22 Aligned_cols=213 Identities=14% Similarity=0.092 Sum_probs=144.6
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc---CCCeEEEEeCC-C--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL---AHRQVWMASSI-H--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~---~~~~v~l~~~~-~--~~~~~~ll~a~~~l 73 (248)
|+.+++.+... ..+||.|++|+ +|.+. .+.+ ......+... .+.+++++.++ . .|+++.+++|+..+
T Consensus 164 s~~~~~~~~~~--~~~ki~vI~ng-vd~~~f~~~~---~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l 237 (396)
T cd03818 164 TRWQRSTFPAE--LRSRISVIHDG-IDTDRLRPDP---QARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRL 237 (396)
T ss_pred CHHHHhhCcHh--hccceEEeCCC-ccccccCCCc---hhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHH
Confidence 44555555332 13789999985 45542 2211 1111111111 24566766654 3 47889999999999
Q ss_pred HHhCCCeEEEEecCCCC-------CHH-HHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEc
Q 043830 74 MQKNPNLVTIIVPRHPQ-------HGK-EIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 74 ~~~~~~~~lvivG~~~~-------~~~-~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~ 143 (248)
.+..|+++++|+|++.. ..+ ..++++++++... ...+|.|.|. ..++..+|+.||+ ++.
T Consensus 238 ~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~V~f~G~v~~~~~~~~l~~adv-~v~ 306 (396)
T cd03818 238 LRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL----------DLSRVHFLGRVPYDQYLALLQVSDV-HVY 306 (396)
T ss_pred HHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc----------CcceEEEeCCCCHHHHHHHHHhCcE-EEE
Confidence 88889999999997321 111 2223333333210 0135666664 3689999999999 567
Q ss_pred CccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 043830 144 GSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAF 223 (248)
Q Consensus 144 ~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 223 (248)
+|..+++ |.+++||||||+|||+++. ++.++++. +..+|++++++|+++|+++|.++++|++.+++|++++++++
T Consensus 307 ~s~~e~~-~~~llEAmA~G~PVIas~~-~g~~e~i~---~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 307 LTYPFVL-SWSLLEAMACGCLVVGSDT-APVREVIT---DGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred cCccccc-chHHHHHHHCCCCEEEcCC-CCchhhcc---cCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 8887875 8899999999999999765 45555543 33456888889999999999999999999999999999999
Q ss_pred HH-h-chhHHHHHH
Q 043830 224 CA-L-SSGIVANVW 235 (248)
Q Consensus 224 ~~-~-~~~~~~~~l 235 (248)
.+ + |+.++++++
T Consensus 382 ~~~fs~~~~~~~~~ 395 (396)
T cd03818 382 LRYDLLSVCLPRQL 395 (396)
T ss_pred HHhccHHHHHHHHh
Confidence 77 4 666666654
No 29
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.90 E-value=6.1e-22 Score=184.46 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=131.4
Q ss_pred CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCC-----------CHHHHHHHHHhcCCceEEecccCCC
Q 043830 49 HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ-----------HGKEIAQKLQKEGEVVALRSRHEKL 115 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~-----------~~~~l~~~~~~~~l~~~~~~~~~~~ 115 (248)
+++++++.++. .|+++.|++|+.++....+++.|+|+|+++. ...++.+++.++|+...+++.|...
T Consensus 549 ~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~ 628 (784)
T TIGR02470 549 NKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQL 628 (784)
T ss_pred CCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcC
Confidence 56777776653 4889999999987755456789999997642 1245677788898876555444211
Q ss_pred CCCccEEEEcChhHHHHHHh----hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEE
Q 043830 116 MPRTNVYVVDTLGELRQLYK----LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQ 191 (248)
Q Consensus 116 ~~~~~v~~~~~~~~l~~~y~----~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~ 191 (248)
+..++..+|+ .+|+ ||.||.+|+| |++++||||||+|||+++. |+.++++. ++.+|+++.
T Consensus 629 ----------~~~~~~elyr~iAd~adV-fV~PS~~EpF-GLvvLEAMAcGlPVVAT~~-GG~~EiV~---dg~tGfLVd 692 (784)
T TIGR02470 629 ----------NRVRNGELYRYIADTKGI-FVQPALYEAF-GLTVLEAMTCGLPTFATRF-GGPLEIIQ---DGVSGFHID 692 (784)
T ss_pred ----------CcccHHHHHHHhhccCcE-EEECCcccCC-CHHHHHHHHcCCCEEEcCC-CCHHHHhc---CCCcEEEeC
Confidence 1124555665 2467 6778999996 9999999999999999865 46666553 445679999
Q ss_pred cCCHHHHHHHHHHhh----hCHHHHHHHHHHHHHHHH-Hh-chhHHHHHHHHHH
Q 043830 192 VSGKSELEEALSQLF----SDARVLEAQQMAAKQAFC-AL-SSGIVANVWNLLN 239 (248)
Q Consensus 192 ~~~~~~l~~~i~~ll----~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~ 239 (248)
+.|+++++++|..++ +|++.+++|+++|++++. .+ |+..+++++++..
T Consensus 693 p~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 693 PYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAG 746 (784)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999876 699999999999999884 45 8888888877654
No 30
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.90 E-value=2.7e-22 Score=173.93 Aligned_cols=197 Identities=16% Similarity=0.101 Sum_probs=144.6
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc---CCCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL---AHRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~---~~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+..++.+... ++.+++.+++|+ +|... .+.+ ..... +..+ .+++++++.|+. .|+++.+++|+..+.
T Consensus 145 s~~~~~~~~~~-~~~~~~~vi~ng-vd~~~~~~~~---~~~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~ 218 (358)
T cd03812 145 SEEAGKWLFGK-VKNKKFKVIPNG-IDLEKFIFNE---EIRKK-RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELL 218 (358)
T ss_pred CHHHHHHHHhC-CCcccEEEEecc-CcHHHcCCCc---hhhhH-HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHH
Confidence 45566677665 677899999986 45432 1111 11111 2222 256667665543 478899999999998
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
+..|+++++|+|+++.. +.+++.++++++.. +|.+.+...++..+|+.||++ +.||..|++ |++
T Consensus 219 ~~~~~~~l~ivG~g~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~adi~-v~ps~~E~~-~~~ 282 (358)
T cd03812 219 KKNPNAKLLLVGDGELE-EEIKKKVKELGLED-------------KVIFLGVRNDVPELLQAMDVF-LFPSLYEGL-PLV 282 (358)
T ss_pred HhCCCeEEEEEeCCchH-HHHHHHHHhcCCCC-------------cEEEecccCCHHHHHHhcCEE-EecccccCC-CHH
Confidence 88899999999998875 78888888877753 455666667899999999995 568888986 999
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFC 224 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 224 (248)
++||||+|+|||+++.+ +.++.+. + +.|++...+++++++++|.++++||+.+++++..+.....
T Consensus 283 ~lEAma~G~PvI~s~~~-~~~~~i~---~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~ 347 (358)
T cd03812 283 LIEAQASGLPCILSDTI-TKEVDLT---D-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGLD 347 (358)
T ss_pred HHHHHHhCCCEEEEcCC-chhhhhc---c-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccch
Confidence 99999999999997654 5555443 2 3334444567899999999999999999999888776543
No 31
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.90 E-value=7.7e-22 Score=168.31 Aligned_cols=193 Identities=15% Similarity=0.122 Sum_probs=143.6
Q ss_pred HcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCC--CcchHHHHHHHHHHHHHhCCCeEEEEecC
Q 043830 10 LLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSI--HRGEEKVMLAVHKVLMQKNPNLVTIIVPR 87 (248)
Q Consensus 10 ~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~--~~~~~~~ll~a~~~l~~~~~~~~lvivG~ 87 (248)
..+.+..++.+++|+. +...... . ...+++.+++.|+ ..|+.+.+++++..+.+..|+++|+|+|.
T Consensus 150 ~~~~~~~~~~vi~~~~-~~~~~~~----~-------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~ 217 (348)
T cd03820 150 YYKKFNKNVVVIPNPL-PFPPEEP----S-------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGD 217 (348)
T ss_pred hhccCCCCeEEecCCc-Chhhccc----c-------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeC
Confidence 3456678899999863 3221100 0 0123445555443 34778899999999988889999999999
Q ss_pred CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 88 HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 88 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++.+ ..+.+++.+.++.. +|.+.+...++..+|+.||++ +.+|..|++ |++++|||+||+|||+
T Consensus 218 ~~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~ad~~-i~ps~~e~~-~~~~~Ea~a~G~Pvi~ 281 (348)
T cd03820 218 GPER-EALEALIKELGLED-------------RVILLGFTKNIEEYYAKASIF-VLTSRFEGF-PMVLLEAMAFGLPVIS 281 (348)
T ss_pred CCCH-HHHHHHHHHcCCCC-------------eEEEcCCcchHHHHHHhCCEE-EeCcccccc-CHHHHHHHHcCCCEEE
Confidence 8775 67777788877753 455555567999999999995 567887885 8999999999999999
Q ss_pred CCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHHHHH
Q 043830 168 GPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIVANV 234 (248)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (248)
++..++..++. ..+ .|+.+...|+++++++|.++++|++.+++|+++++..++++ |+..++++
T Consensus 282 ~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (348)
T cd03820 282 FDCPTGPSEII----EDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQW 346 (348)
T ss_pred ecCCCchHhhh----ccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHh
Confidence 86544433332 333 56778888999999999999999999999999998888777 66655554
No 32
>PLN02939 transferase, transferring glycosyl groups
Probab=99.89 E-value=8.1e-22 Score=184.91 Aligned_cols=214 Identities=12% Similarity=0.049 Sum_probs=154.3
Q ss_pred cCCCCCCeEEcCCcccccc-cCCCC-------CC-------cccHHHHHHhcC------CCeEEEEeCCC--cchHHHHH
Q 043830 11 LEASPFTINFSGDLKYVHE-YDESE-------GD-------IGSIEDLKASLA------HRQVWMASSIH--RGEEKVML 67 (248)
Q Consensus 11 ~gv~~~kI~v~gn~~~d~~-~~~~~-------~~-------~~~~~~~r~~~~------~~~v~l~~~~~--~~~~~~ll 67 (248)
++.+.+|+.+|+|+ +|.. ..|.. .+ ......++++++ +.+++++.|+. .|+++.++
T Consensus 720 L~~~~~Kl~gIlNG-ID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLl 798 (977)
T PLN02939 720 LKFHSKKFVGILNG-IDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIR 798 (977)
T ss_pred hccccCCceEEecc-eehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHH
Confidence 35678899999985 4544 22211 00 012346777775 23677776653 47889999
Q ss_pred HHHHHHHHhCCCeEEEEecCCCCC--HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhH--HHHHHhhCCEEEEc
Q 043830 68 AVHKVLMQKNPNLVTIIVPRHPQH--GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGE--LRQLYKLTPIAVIG 143 (248)
Q Consensus 68 ~a~~~l~~~~~~~~lvivG~~~~~--~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~--l~~~y~~ad~~~v~ 143 (248)
+|+..+.. ++++|+|+|+|+.. ..++++++.++++.. +|.|.+.+.+ .+.+|+.||+ |+.
T Consensus 799 eA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~d-------------rV~FlG~~de~lah~IYAaADI-FLm 862 (977)
T PLN02939 799 HAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNN-------------NIRLILKYDEALSHSIYAASDM-FII 862 (977)
T ss_pred HHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCC-------------eEEEEeccCHHHHHHHHHhCCE-EEE
Confidence 99988764 57899999998753 256777777776643 4555544333 4689999999 567
Q ss_pred CccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHH------HhcCCceEEEcCCHHHHHHHHHHhhh----CHHHHH
Q 043830 144 GSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAM------QRLNPKSVLQVSGKSELEEALSQLFS----DARVLE 213 (248)
Q Consensus 144 ~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~------~~~g~g~~~~~~~~~~l~~~i~~ll~----~~~~~~ 213 (248)
||.+|+| |++++|||+||+|+|+++. ++..+.+.+. ...++|+++.+.|+++|+++|.+++. |++.++
T Consensus 863 PSr~EPf-GLvqLEAMAyGtPPVVs~v-GGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~ 940 (977)
T PLN02939 863 PSMFEPC-GLTQMIAMRYGSVPIVRKT-GGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWK 940 (977)
T ss_pred CCCccCC-cHHHHHHHHCCCCEEEecC-CCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 8999986 9999999999999998754 5666654321 01246788889999999999998775 899999
Q ss_pred HHHHHHHHHHHHh-chhHHHHHHHHHHHHhhhh
Q 043830 214 AQQMAAKQAFCAL-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 214 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 245 (248)
+|++++. ...| |+.+++++.++|.+++..+
T Consensus 941 ~L~~~am--~~dFSWe~~A~qYeeLY~~ll~~~ 971 (977)
T PLN02939 941 QLVQKDM--NIDFSWDSSASQYEELYQRAVARA 971 (977)
T ss_pred HHHHHHH--HhcCCHHHHHHHHHHHHHHHHHhh
Confidence 9998664 3456 8999999999999987653
No 33
>PHA01630 putative group 1 glycosyl transferase
Probab=99.89 E-value=1.3e-21 Score=168.81 Aligned_cols=202 Identities=13% Similarity=0.016 Sum_probs=140.4
Q ss_pred CHHHHHHHHHcCCC-CCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHh
Q 043830 1 STLQAIRFQLLEAS-PFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQK 76 (248)
Q Consensus 1 s~~~~~~l~~~gv~-~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~ 76 (248)
|+.+++.+.+.|++ +++|.|++|+ +|.+. .+.. . ...+..++.++++. .|+++.+|+|++.+.++
T Consensus 102 S~~~~~~l~~~g~~~~~~i~vIpNG-Vd~~~f~~~~---~-------~~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~ 170 (331)
T PHA01630 102 SQWSKNAFYTSGLKIPQPIYVIPHN-LNPRMFEYKP---K-------EKPHPCVLAILPHSWDRKGGDIVVKIFHELQNE 170 (331)
T ss_pred CHHHHHHHHHcCCCCCCCEEEECCC-CCHHHcCCCc---c-------ccCCCEEEEEeccccccCCHHHHHHHHHHHHhh
Confidence 67888999888876 5789999985 55432 2110 0 01133455555443 47899999999999887
Q ss_pred CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHH
Q 043830 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 77 ~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~l 156 (248)
.++++++|+|+++.. ..+ .++.. +...-+..++..+|+.||+ |+.||..|+| |++++
T Consensus 171 ~~~~~llivG~~~~~-~~l------~~~~~--------------~~~~v~~~~l~~~y~~aDv-~v~pS~~E~f-gl~~l 227 (331)
T PHA01630 171 GYDFYFLIKSSNMLD-PRL------FGLNG--------------VKTPLPDDDIYSLFAGCDI-LFYPVRGGAF-EIPVI 227 (331)
T ss_pred CCCEEEEEEeCcccc-hhh------ccccc--------------eeccCCHHHHHHHHHhCCE-EEECCccccC-ChHHH
Confidence 889999999976543 211 12211 1111234699999999999 5678888986 99999
Q ss_pred HHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEE-------------------cCCHHHHHHHHHHhhhC---HHHHHH
Q 043830 157 EAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQ-------------------VSGKSELEEALSQLFSD---ARVLEA 214 (248)
Q Consensus 157 EA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~-------------------~~~~~~l~~~i~~ll~~---~~~~~~ 214 (248)
||||||+|||+++. ++.+|.+.. +.+|+++. ..|.+++++++.+++.| ++.++.
T Consensus 228 EAMA~G~PVIas~~-gg~~E~i~~---~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~ 303 (331)
T PHA01630 228 EALALGLDVVVTEK-GAWSEWVLS---NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKEN 303 (331)
T ss_pred HHHHcCCCEEEeCC-CCchhhccC---CCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999865 466665433 22223322 23778888899999987 456667
Q ss_pred HHHHHHHHHHHh-chhHHHHHHHHHHH
Q 043830 215 QQMAAKQAFCAL-SSGIVANVWNLLNF 240 (248)
Q Consensus 215 ~~~~~~~~~~~~-~~~~~~~~l~~~~~ 240 (248)
++++++...+++ |+..++++.++|++
T Consensus 304 ~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 304 LEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 777777777777 78888898888865
No 34
>PLN02316 synthase/transferase
Probab=99.89 E-value=1.6e-21 Score=185.61 Aligned_cols=226 Identities=10% Similarity=-0.012 Sum_probs=162.5
Q ss_pred CHHHHHHHHHcC-CC--CCCeEEcCCccccccc-CCCC-------CCc--------ccHHHHHHhcC----CCeEEEEeC
Q 043830 1 STLQAIRFQLLE-AS--PFTINFSGDLKYVHEY-DESE-------GDI--------GSIEDLKASLA----HRQVWMASS 57 (248)
Q Consensus 1 s~~~~~~l~~~g-v~--~~kI~v~gn~~~d~~~-~~~~-------~~~--------~~~~~~r~~~~----~~~v~l~~~ 57 (248)
|+..++.+...+ ++ .+|+.+|+|+ +|... .|.. .+. .....++++++ +.+++++.|
T Consensus 769 S~tya~EI~~~~~l~~~~~Kl~vI~NG-ID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VG 847 (1036)
T PLN02316 769 SPTYSREVSGNSAIAPHLYKFHGILNG-IDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIIT 847 (1036)
T ss_pred CHHHHHHHHhccCcccccCCEEEEECC-ccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEe
Confidence 677777887654 43 4899999985 45431 1110 000 11345677765 457777766
Q ss_pred CC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCCC--HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhH-H-H
Q 043830 58 IH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQH--GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGE-L-R 131 (248)
Q Consensus 58 ~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~--~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~-l-~ 131 (248)
+. .|+++.|++|+..+.+ ++++|+|+|+||+. ..++++++.++++.. ..+|.|.+.+.+ + .
T Consensus 848 RL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~-----------~~rV~f~g~~de~lah 914 (1036)
T PLN02316 848 RLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHSSH-----------HDRARLCLTYDEPLSH 914 (1036)
T ss_pred ccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCccC-----------CCeEEEEecCCHHHHH
Confidence 54 4789999999998865 47899999998763 256778888876631 124444443333 3 4
Q ss_pred HHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh----------cCCceEEEcCCHHHHHHH
Q 043830 132 QLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR----------LNPKSVLQVSGKSELEEA 201 (248)
Q Consensus 132 ~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~----------~g~g~~~~~~~~~~l~~~ 201 (248)
.+|+.||+ |+.||.+|++ |++.+|||+||+|+|++ .+|+.++.+.+... .++|+++...|+++|+.+
T Consensus 915 ~iyaaADi-flmPS~~EP~-GLvqLEAMa~GtppVvs-~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~A 991 (1036)
T PLN02316 915 LIYAGADF-ILVPSIFEPC-GLTQLTAMRYGSIPVVR-KTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYA 991 (1036)
T ss_pred HHHHhCcE-EEeCCcccCc-cHHHHHHHHcCCCeEEE-cCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHH
Confidence 79999999 5668999986 99999999999999986 45678776654310 246789999999999999
Q ss_pred HHHhhhC-HHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHhh
Q 043830 202 LSQLFSD-ARVLEAQQMAAKQAFCA-L-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 202 i~~ll~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~ 243 (248)
|.+++.+ ++.+..|++.+++.+.+ + |..++++++++|+++.+
T Consensus 992 L~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~~ 1036 (1036)
T PLN02316 992 LNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSARK 1036 (1036)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhC
Confidence 9999987 46677788888888754 5 89999999999998753
No 35
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.89 E-value=1.5e-21 Score=170.84 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=146.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCC--CcchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSI--HRGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~--~~~~~~~ll~a~~~l~~~~ 77 (248)
|+..++.+....-...+|.+++|+ ++... .+. . . ....+..+++.|+ ..|+++.+|+|+..+.++.
T Consensus 165 s~~~~~~l~~~~~~~~~v~~ip~g-~~~~~~~~~-----~---~--~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~ 233 (372)
T cd04949 165 TEQQKQDLQKQFGNYNPIYTIPVG-SIDPLKLPA-----Q---F--KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQV 233 (372)
T ss_pred cHHHHHHHHHHhCCCCceEEEccc-ccChhhccc-----c---h--hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhC
Confidence 566677776543333458889875 33322 110 0 0 1112344554443 2477889999999999889
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lE 157 (248)
|+++|+|+|.++.. ..+.+.+.++++.. +|.+.+...++..+|+.||+ ++.+|..||| |++++|
T Consensus 234 ~~~~l~i~G~g~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~ad~-~v~~S~~Eg~-~~~~lE 297 (372)
T cd04949 234 PDATLDIYGYGDEE-EKLKELIEELGLED-------------YVFLKGYTRDLDEVYQKAQL-SLLTSQSEGF-GLSLME 297 (372)
T ss_pred CCcEEEEEEeCchH-HHHHHHHHHcCCcc-------------eEEEcCCCCCHHHHHhhhhE-EEeccccccc-ChHHHH
Confidence 99999999998765 67788787877764 34455555689999999999 4668888886 999999
Q ss_pred HHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHHH
Q 043830 158 AAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIVA 232 (248)
Q Consensus 158 A~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~ 232 (248)
||++|+|||+++...+.++.+ .+..+|.++...|+++|+++|..+++|++.+++|++++++...++ ++..++
T Consensus 298 Ama~G~PvI~~~~~~g~~~~v---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~ 370 (372)
T cd04949 298 ALSHGLPVISYDVNYGPSEII---EDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWE 370 (372)
T ss_pred HHhCCCCEEEecCCCCcHHHc---ccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999876443444443 334556888888999999999999999999999999999987666 444433
No 36
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.89 E-value=4e-21 Score=168.86 Aligned_cols=211 Identities=16% Similarity=0.115 Sum_probs=150.4
Q ss_pred CHHHHHHHHHc-CCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc---CCCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQLL-EASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL---AHRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~~-gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~---~~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+..++.+.+. +.+..++.+++|+ +|... .+.. . ....+..+ .+++++++.|+. .++.+.+++|+..+
T Consensus 171 s~~~~~~~~~~~~~~~~~~~vi~ng-~~~~~~~~~~-~---~~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l 245 (398)
T cd03800 171 TPQEAEELYSLYGAYPRRIRVVPPG-VDLERFTPYG-R---AEARRARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAEL 245 (398)
T ss_pred CHHHHHHHHHHccccccccEEECCC-CCccceeccc-c---hhhHHHhhccCCCCcEEEEEcccccccCHHHHHHHHHHH
Confidence 45666777665 4556679999975 44432 1111 0 01112222 255677766653 46788999999999
Q ss_pred HHhCCCeEEEEecCCCCC-----HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCcc
Q 043830 74 MQKNPNLVTIIVPRHPQH-----GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 74 ~~~~~~~~lvivG~~~~~-----~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~ 146 (248)
.++.++++++|+|+++.. ..+++..++.+++.. +|.+.+. ..++..+|+.||++ +.||.
T Consensus 246 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~~~adi~-l~ps~ 311 (398)
T cd03800 246 PELRERANLVIVGGPRDDILAMDEEELRELARELGVID-------------RVDFPGRVSREDLPALYRAADVF-VNPAL 311 (398)
T ss_pred HHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCc-------------eEEEeccCCHHHHHHHHHhCCEE-Eeccc
Confidence 888889999999987542 134566667776653 4455554 46899999999995 56888
Q ss_pred CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HH
Q 043830 147 LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAF-CA 225 (248)
Q Consensus 147 ~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~ 225 (248)
.|++ |.+++|||+||+|||+++.+ +..+.+ .+.++|+++.+.|+++++++|.++++|++.+++|++++++++ ++
T Consensus 312 ~e~~-~~~l~Ea~a~G~Pvi~s~~~-~~~e~i---~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~ 386 (398)
T cd03800 312 YEPF-GLTALEAMACGLPVVATAVG-GPRDIV---VDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARAR 386 (398)
T ss_pred cccc-CcHHHHHHhcCCCEEECCCC-CHHHHc---cCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 8885 89999999999999997654 554443 344566878888999999999999999999999999999998 44
Q ss_pred h-chhHHHHHH
Q 043830 226 L-SSGIVANVW 235 (248)
Q Consensus 226 ~-~~~~~~~~l 235 (248)
+ |+..+++++
T Consensus 387 ~s~~~~~~~~~ 397 (398)
T cd03800 387 YTWERVAARLL 397 (398)
T ss_pred CCHHHHHHHHh
Confidence 4 566665543
No 37
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.88 E-value=3.4e-21 Score=171.09 Aligned_cols=195 Identities=17% Similarity=0.120 Sum_probs=143.3
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~ 77 (248)
|+..++.+.+ .+...+++.+++|+. +...... . ....+.+.+++.|+. .|+++.+++|+..+.+..
T Consensus 191 S~~~~~~l~~~~~~~~~ki~vi~~gv-~~~~~~~----~------~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~ 259 (407)
T cd04946 191 SEQGRNYLQKRYPAYKEKIKVSYLGV-SDPGIIS----K------PSKDDTLRIVSCSYLVPVKRVDLIIKALAALAKAR 259 (407)
T ss_pred CHHHHHHHHHHCCCccccEEEEECCc-ccccccC----C------CCCCCCEEEEEeeccccccCHHHHHHHHHHHHHhC
Confidence 6777888865 688889999998763 3221100 0 001234556655543 477899999999998877
Q ss_pred C--CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhh--CCEEEEcCccCCCCC
Q 043830 78 P--NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKL--TPIAVIGGSFLPGLA 151 (248)
Q Consensus 78 ~--~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~--ad~~~v~~s~~e~~g 151 (248)
| +++++++|+|+.. +.+++++++.+... +|.+.|.. .++..+|+. +|+ |+.+|..||+
T Consensus 260 p~~~l~~~iiG~g~~~-~~l~~~~~~~~~~~-------------~V~f~G~v~~~e~~~~~~~~~~~v-~v~~S~~Eg~- 323 (407)
T cd04946 260 PSIKIKWTHIGGGPLE-DTLKELAESKPENI-------------SVNFTGELSNSEVYKLYKENPVDV-FVNLSESEGL- 323 (407)
T ss_pred CCceEEEEEEeCchHH-HHHHHHHHhcCCCc-------------eEEEecCCChHHHHHHHhhcCCCE-EEeCCccccc-
Confidence 6 4667889998775 78888887665543 45555543 478999976 566 6778988986
Q ss_pred CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc-CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh
Q 043830 152 GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV-SGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 152 g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
|.+++||||||+|||+++. ++.+|+++ +..+|.++.. +|+++++++|.++++|++.+++|+++|++++.+.
T Consensus 324 p~~llEAma~G~PVIas~v-gg~~e~i~---~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~ 395 (407)
T cd04946 324 PVSIMEAMSFGIPVIATNV-GGTPEIVD---NGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEEN 395 (407)
T ss_pred cHHHHHHHHcCCCEEeCCC-CCcHHHhc---CCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999764 46665543 3335676665 4899999999999999999999999999998654
No 38
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.88 E-value=6.4e-21 Score=164.86 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=142.5
Q ss_pred CCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCC-C-cchHHHHHHHHHHHHHhCCCeEEEEecCCCCCH
Q 043830 15 PFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSI-H-RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHG 92 (248)
Q Consensus 15 ~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~-~-~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~ 92 (248)
++++.+++|+.......+. .. ..-.....+.+++++.|+ . .|+++.+++|+..+.++.++++|+|+|+++...
T Consensus 155 ~~~~~~i~~~~~~~~~~~~----~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~ 229 (366)
T cd03822 155 PEKIAVIPHGVPDPPAEPP----ES-LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDL 229 (366)
T ss_pred CCcEEEeCCCCcCcccCCc----hh-hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccch
Confidence 4789999986422222110 00 100001124555555443 3 477889999999998888999999999876543
Q ss_pred HHHHH----HHHhcCCceEEecccCCCCCCccEEEEcC---hhHHHHHHhhCCEEEEcCccCC--CCCCCCHHHHHhhCC
Q 043830 93 KEIAQ----KLQKEGEVVALRSRHEKLMPRTNVYVVDT---LGELRQLYKLTPIAVIGGSFLP--GLAGHNISEAAAAGC 163 (248)
Q Consensus 93 ~~l~~----~~~~~~l~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~y~~ad~~~v~~s~~e--~~gg~~~lEA~a~G~ 163 (248)
..... +++++++.. +|.+.+. .+++..+|+.||++ +.||..| ++ |.+++|||+||+
T Consensus 230 ~~~~~~~~~~i~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~ad~~-v~ps~~e~~~~-~~~~~Ea~a~G~ 294 (366)
T cd03822 230 ERYRGEAYALAERLGLAD-------------RVIFINRYLPDEELPELFSAADVV-VLPYRSADQTQ-SGVLAYAIGFGK 294 (366)
T ss_pred hhhhhhhHhHHHhcCCCC-------------cEEEecCcCCHHHHHHHHhhcCEE-Eeccccccccc-chHHHHHHHcCC
Confidence 33222 266777653 4445443 46899999999995 5688878 75 889999999999
Q ss_pred cEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHH
Q 043830 164 AVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIVANVWNLL 238 (248)
Q Consensus 164 Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 238 (248)
|||+++.++ . + .+.+.+.|.++...|+++++++|..+++|++.+.+|++++++++.++ |+..++++.++|
T Consensus 295 PvI~~~~~~-~-~---~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 295 PVISTPVGH-A-E---EVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYLRLL 365 (366)
T ss_pred CEEecCCCC-h-h---eeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 999987553 3 2 23345566888889999999999999999999999999999999877 778887777765
No 39
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.88 E-value=5.2e-21 Score=168.57 Aligned_cols=213 Identities=15% Similarity=0.082 Sum_probs=145.3
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeEEEEeC-CC-cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQVWMASS-IH-RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v~l~~~-~~-~~~~~~ll~a~~~l~~ 75 (248)
|+.+++.+.+.|++++||.++|++. +..+... ......+|++++ +++++++.+ .. .+++..+++++..+..
T Consensus 158 s~~~~~~l~~~g~~~~ki~v~g~~v-~~~f~~~---~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~ 233 (382)
T PLN02605 158 SEEVAKRALKRGLEPSQIRVYGLPI-RPSFARA---VRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLY 233 (382)
T ss_pred CHHHHHHHHHcCCCHHHEEEECccc-CHhhccC---CCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhc
Confidence 6778889999999999999999763 3322110 112456777775 456666543 33 3567788888876431
Q ss_pred ----hCCCeE-EEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCC
Q 043830 76 ----KNPNLV-TIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGL 150 (248)
Q Consensus 76 ----~~~~~~-lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~ 150 (248)
..++.+ ++++|+++. +++.+++.... .+|.+.|...+++++|+.||+++. ++
T Consensus 234 ~~~~~~~~~~~~vi~G~~~~----~~~~L~~~~~~-------------~~v~~~G~~~~~~~l~~aaDv~V~-----~~- 290 (382)
T PLN02605 234 DKNLGKPIGQVVVICGRNKK----LQSKLESRDWK-------------IPVKVRGFVTNMEEWMGACDCIIT-----KA- 290 (382)
T ss_pred cccccCCCceEEEEECCCHH----HHHHHHhhccc-------------CCeEEEeccccHHHHHHhCCEEEE-----CC-
Confidence 135564 667787532 22223322111 246677777799999999999653 33
Q ss_pred CCCCHHHHHhhCCcEEECCCCCChH-HHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC-HHHHHHHHHHHHHHHHHhch
Q 043830 151 AGHNISEAAAAGCAVLTGPHIGHYS-NMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD-ARVLEAQQMAAKQAFCALSS 228 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~~~~~~~~~-~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~~~ 228 (248)
||.+++|||+||+|||+++...+.. +..+.+.+.| .++.+.|+++|+++|.++++| ++.+++|+++++++. ..
T Consensus 291 g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g--~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~---~~ 365 (382)
T PLN02605 291 GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNG--FGAFSESPKEIARIVAEWFGDKSDELEAMSENALKLA---RP 365 (382)
T ss_pred CcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCC--ceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CC
Confidence 5788999999999999976422211 2334555556 455669999999999999998 999999999998875 35
Q ss_pred hHHHHHHHHHHHHhhhh
Q 043830 229 GIVANVWNLLNFHVFRR 245 (248)
Q Consensus 229 ~~~~~~l~~~~~~~~~~ 245 (248)
.+++++.+.+.+++.+|
T Consensus 366 ~a~~~i~~~l~~~~~~~ 382 (382)
T PLN02605 366 EAVFDIVHDLHELVRQR 382 (382)
T ss_pred chHHHHHHHHHHHhhCC
Confidence 77788888887776553
No 40
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.88 E-value=4e-21 Score=170.05 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=140.4
Q ss_pred CHHHHHHHHHc-CCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc-CCCeEEEEeCC--CcchHHHHH----HHHH
Q 043830 1 STLQAIRFQLL-EASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL-AHRQVWMASSI--HRGEEKVML----AVHK 71 (248)
Q Consensus 1 s~~~~~~l~~~-gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~-~~~~v~l~~~~--~~~~~~~ll----~a~~ 71 (248)
|+.+++.+.+. +.+++++.+++|+ +|.+. .+... . ...+ .+.+++++.|+ ..++++.++ ++++
T Consensus 180 S~~~~~~l~~~~~~~~~~v~vipng-vd~~~f~~~~~---~----~~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~ 251 (397)
T TIGR03087 180 SRAEAELFRRLAPEAAGRITAFPNG-VDADFFSPDRD---Y----PNPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFP 251 (397)
T ss_pred CHHHHHHHHHhCCCCCCCeEEeecc-cchhhcCCCcc---c----cCCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHH
Confidence 67788888775 4567899999985 45542 22110 0 0011 23456666554 346666665 5677
Q ss_pred HHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCcc-CCCC
Q 043830 72 VLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSF-LPGL 150 (248)
Q Consensus 72 ~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~-~e~~ 150 (248)
.+.+..|+++|+|+|+++. .+++++ +.. .+|.|.|...++..+|+.||+++ .||. .||+
T Consensus 252 ~l~~~~p~~~l~ivG~g~~--~~~~~l----~~~-------------~~V~~~G~v~~~~~~~~~adv~v-~Ps~~~eG~ 311 (397)
T TIGR03087 252 AVRARRPAAEFYIVGAKPS--PAVRAL----AAL-------------PGVTVTGSVADVRPYLAHAAVAV-APLRIARGI 311 (397)
T ss_pred HHHHHCCCcEEEEECCCCh--HHHHHh----ccC-------------CCeEEeeecCCHHHHHHhCCEEE-ecccccCCc
Confidence 7777789999999999875 334333 211 24667777778999999999964 5665 4775
Q ss_pred CCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH-h-ch
Q 043830 151 AGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA-L-SS 228 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~-~-~~ 228 (248)
+.+++||||||+|||+++.+. .++. ...+.|+++. +|+++++++|.++++|++++++|+++|++++.+ + |+
T Consensus 312 -~~~~lEAma~G~PVV~t~~~~--~~i~---~~~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~ 384 (397)
T TIGR03087 312 -QNKVLEAMAMAKPVVASPEAA--EGID---ALPGAELLVA-ADPADFAAAILALLANPAEREELGQAARRRVLQHYHWP 384 (397)
T ss_pred -ccHHHHHHHcCCCEEecCccc--cccc---ccCCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 788999999999999976421 1111 1234456554 899999999999999999999999999999854 4 67
Q ss_pred hHHHHHHHHH
Q 043830 229 GIVANVWNLL 238 (248)
Q Consensus 229 ~~~~~~l~~~ 238 (248)
..++++.++|
T Consensus 385 ~~~~~~~~~l 394 (397)
T TIGR03087 385 RNLARLDALL 394 (397)
T ss_pred HHHHHHHHHh
Confidence 7777666555
No 41
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.88 E-value=3.6e-21 Score=169.38 Aligned_cols=209 Identities=11% Similarity=0.045 Sum_probs=143.2
Q ss_pred CHHHHHHHHH-cC-CCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQL-LE-ASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~-~g-v~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~ 75 (248)
|+.+++.+.+ ++ .+..++.|++|+ +|.. +.+... ..........++.+++++.++. .|+.+.+++|+..+.+
T Consensus 162 s~~~~~~~~~~~~~~~~~~~~vi~n~-vd~~~~~~~~~--~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~ 238 (392)
T cd03805 162 SNFTASVFKKTFPSLAKNPREVVYPC-VDTDSFESTSE--DPDPGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKD 238 (392)
T ss_pred ChhHHHHHHHHhcccccCCcceeCCC-cCHHHcCcccc--cccccccccCCCceEEEEEeeecccCChHHHHHHHHHHHh
Confidence 4566676654 34 333444578875 4443 221110 0000000111355666665543 4788999999999988
Q ss_pred hC---CCeEEEEecCCCCC-------HHHHHHHHHh-cCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEE
Q 043830 76 KN---PNLVTIIVPRHPQH-------GKEIAQKLQK-EGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVI 142 (248)
Q Consensus 76 ~~---~~~~lvivG~~~~~-------~~~l~~~~~~-~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v 142 (248)
.. |+++|+++|+++.+ .+++++++++ +++.. +|.|.|. ..++..+|+.||++ +
T Consensus 239 ~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~-------------~V~f~g~~~~~~~~~~l~~ad~~-l 304 (392)
T cd03805 239 KLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLED-------------QVIFLPSISDSQKELLLSSARAL-L 304 (392)
T ss_pred hcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCc-------------eEEEeCCCChHHHHHHHhhCeEE-E
Confidence 76 89999999987653 2578888888 77764 3445553 25788999999995 4
Q ss_pred cCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 043830 143 GGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 222 (248)
.+|..|+| |++++|||+||+|||+++.+ +..+.+ .+..+|+++. .|+++++++|..+++|++.+++|+++++++
T Consensus 305 ~~s~~E~~-g~~~lEAma~G~PvI~s~~~-~~~e~i---~~~~~g~~~~-~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 305 YTPSNEHF-GIVPLEAMYAGKPVIACNSG-GPLETV---VDGETGFLCE-PTPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred ECCCcCCC-CchHHHHHHcCCCEEEECCC-CcHHHh---ccCCceEEeC-CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 57778986 89999999999999997654 454543 3334456654 599999999999999999999999999998
Q ss_pred HHHh--chhHHH
Q 043830 223 FCAL--SSGIVA 232 (248)
Q Consensus 223 ~~~~--~~~~~~ 232 (248)
+.+. |+..++
T Consensus 379 ~~~~~s~~~~~~ 390 (392)
T cd03805 379 VKEKFSTEAFAE 390 (392)
T ss_pred HHHhcCHHHHhh
Confidence 8553 454443
No 42
>PRK14098 glycogen synthase; Provisional
Probab=99.88 E-value=2.9e-21 Score=174.89 Aligned_cols=219 Identities=9% Similarity=-0.031 Sum_probs=154.2
Q ss_pred CHHHHHHHHH-----cCCC------CCCeEEcCCccccccc-CCCCCCc---------------ccHHHHHHhcC-----
Q 043830 1 STLQAIRFQL-----LEAS------PFTINFSGDLKYVHEY-DESEGDI---------------GSIEDLKASLA----- 48 (248)
Q Consensus 1 s~~~~~~l~~-----~gv~------~~kI~v~gn~~~d~~~-~~~~~~~---------------~~~~~~r~~~~----- 48 (248)
|+..++.+.+ .|++ ++|+.+|+|+ +|.+. .|.. ++ ..+..+++.++
T Consensus 228 S~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NG-ID~~~~~p~~-d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~ 305 (489)
T PRK14098 228 SPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNG-IDTRQWNPST-DKLIKKRYSIERLDGKLENKKALLEEVGLPFDE 305 (489)
T ss_pred CHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCC-ccccccCCcc-cccccccCCcchhhhHHHHHHHHHHHhCCCCcc
Confidence 5667777754 2453 6899999985 45542 2211 11 01234555554
Q ss_pred CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCCC-HHHHHHHHHhcCCceEEecccCCCCCCccEEEEc
Q 043830 49 HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQH-GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD 125 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~-~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~ 125 (248)
+.+++++.|+. .|+++.+++|+..+.+ ++++|+|+|+|+.. .+++++++++++ .+|.+.+
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~---------------~~V~~~g 368 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHP---------------EQVSVQT 368 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCC---------------CCEEEEE
Confidence 35677776653 4789999999999864 47999999998753 357777776653 1344444
Q ss_pred C--hhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHH-hcCCceEEEcCCHHHHHHHH
Q 043830 126 T--LGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ-RLNPKSVLQVSGKSELEEAL 202 (248)
Q Consensus 126 ~--~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~-~~g~g~~~~~~~~~~l~~~i 202 (248)
. ..++..+|+.||+ |+.||..|++ |++.+|||+||+|+|++.. ++..+.+.... +.++|+++...|+++|+++|
T Consensus 369 ~~~~~~~~~~~a~aDi-~l~PS~~E~~-Gl~~lEAma~G~ppVv~~~-GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai 445 (489)
T PRK14098 369 EFTDAFFHLAIAGLDM-LLMPGKIESC-GMLQMFAMSYGTIPVAYAG-GGIVETIEEVSEDKGSGFIFHDYTPEALVAKL 445 (489)
T ss_pred ecCHHHHHHHHHhCCE-EEeCCCCCCc-hHHHHHHHhCCCCeEEecC-CCCceeeecCCCCCCceeEeCCCCHHHHHHHH
Confidence 2 2467999999999 4668988986 9999999999999888654 45655442211 24567888889999999999
Q ss_pred HHhh---hCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhh
Q 043830 203 SQLF---SDARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 203 ~~ll---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 243 (248)
.+++ +|++.+++|++++. ...+ |+.++++++++|++++.
T Consensus 446 ~~~l~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 446 GEALALYHDEERWEELVLEAM--ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHHcCHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHhc
Confidence 9755 68888888887653 2455 89999999999998763
No 43
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.87 E-value=4.4e-21 Score=165.81 Aligned_cols=211 Identities=16% Similarity=0.112 Sum_probs=150.5
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~ 77 (248)
|+.+++.+.+ .+.+++++.+++|+. +....... ............+++++++.|+. .|+++.+++++..+....
T Consensus 148 s~~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~ 224 (365)
T cd03809 148 SEATKRDLLRYLGVPPDKIVVIPLGV-DPRFRPPP--AEAEVLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKG 224 (365)
T ss_pred cHHHHHHHHHHhCcCHHHEEeecccc-CccccCCC--chHHHHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhc
Confidence 5677888866 567788999999863 43321110 00110111111255666666544 477899999999998888
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
++++++++|.++.........+++.++... |.+.+.. .++..+|+.||++ +.||..|++ |+++
T Consensus 225 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~-------------v~~~g~~~~~~~~~~~~~~d~~-l~ps~~e~~-~~~~ 289 (365)
T cd03809 225 PDPKLVIVGKRGWLNEELLARLRELGLGDR-------------VRFLGYVSDEELAALYRGARAF-VFPSLYEGF-GLPV 289 (365)
T ss_pred CCCCEEEecCCccccHHHHHHHHHcCCCCe-------------EEECCCCChhHHHHHHhhhhhh-cccchhccC-CCCH
Confidence 889999999876544555555456666543 4444433 6899999999984 578888885 8999
Q ss_pred HHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHHHHH
Q 043830 156 SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIVANV 234 (248)
Q Consensus 156 lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (248)
+|||++|+|||+++. ++..+.+ .+ .|.++.+.|.++++++|.++++|++.+.+|++++++++.++ |+..++++
T Consensus 290 ~Ea~a~G~pvI~~~~-~~~~e~~---~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 290 LEAMACGTPVIASNI-SSLPEVA---GD--AALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRT 363 (365)
T ss_pred HHHhcCCCcEEecCC-CCcccee---cC--ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999998754 3554433 22 34778889999999999999999999999999999888777 77777665
Q ss_pred H
Q 043830 235 W 235 (248)
Q Consensus 235 l 235 (248)
+
T Consensus 364 ~ 364 (365)
T cd03809 364 L 364 (365)
T ss_pred h
Confidence 4
No 44
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.87 E-value=4.7e-21 Score=173.33 Aligned_cols=217 Identities=14% Similarity=0.048 Sum_probs=151.4
Q ss_pred CHHHHHHHHH--c--CC------CCCCeEEcCCccccccc-CCCCCC---------------cccHHHHHHhcC-----C
Q 043830 1 STLQAIRFQL--L--EA------SPFTINFSGDLKYVHEY-DESEGD---------------IGSIEDLKASLA-----H 49 (248)
Q Consensus 1 s~~~~~~l~~--~--gv------~~~kI~v~gn~~~d~~~-~~~~~~---------------~~~~~~~r~~~~-----~ 49 (248)
|+..++.+.. . |+ +++|+.+++|+ +|... .|.. + ......++++++ +
T Consensus 213 S~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NG-id~~~~~p~~-~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~ 290 (473)
T TIGR02095 213 SPTYAREILTPEFGYGLDGVLKARSGKLRGILNG-IDTEVWNPAT-DPYLKANYSADDLAGKAENKEALQEELGLPVDDD 290 (473)
T ss_pred CHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCC-CCccccCCCC-CcccccCcCccchhhhhhhHHHHHHHcCCCccCC
Confidence 4556666643 1 22 46799999985 45432 2210 1 012345666664 4
Q ss_pred CeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEE-Ec
Q 043830 50 RQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYV-VD 125 (248)
Q Consensus 50 ~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~ 125 (248)
.+++++.|+. .|+++.+++|+..+.+. +++|+|+|.++. ..+++++++.+.+. ++.+ .+
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~---------------~v~~~~~ 353 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYPG---------------NVRVIIG 353 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCC---------------cEEEEEc
Confidence 5677776654 47889999999998753 599999999853 33566666655432 2222 22
Q ss_pred -ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHH---hcCCceEEEcCCHHHHHHH
Q 043830 126 -TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ---RLNPKSVLQVSGKSELEEA 201 (248)
Q Consensus 126 -~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~---~~g~g~~~~~~~~~~l~~~ 201 (248)
...++..+|+.||++ +.||..|++ |++++|||+||+|+|+++. ++.++.+.... ..++|+++.+.|+++|+++
T Consensus 354 ~~~~~~~~~~~~aDv~-l~pS~~E~~-gl~~lEAma~G~pvI~s~~-gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~ 430 (473)
T TIGR02095 354 YDEALAHLIYAGADFI-LMPSRFEPC-GLTQLYAMRYGTVPIVRRT-GGLADTVVDGDPEAESGTGFLFEEYDPGALLAA 430 (473)
T ss_pred CCHHHHHHHHHhCCEE-EeCCCcCCc-HHHHHHHHHCCCCeEEccC-CCccceEecCCCCCCCCceEEeCCCCHHHHHHH
Confidence 234578999999995 568888986 8999999999999998754 46665443210 0156788888999999999
Q ss_pred HHHhhh----CHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Q 043830 202 LSQLFS----DARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFH 241 (248)
Q Consensus 202 i~~ll~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 241 (248)
|.+++. |++.+++|++++.+ ..+ |+.+++++.++|+++
T Consensus 431 i~~~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 431 LSRALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHhC
Confidence 999988 99999999998753 356 899999999999863
No 45
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.87 E-value=1.6e-20 Score=162.89 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=149.1
Q ss_pred CHHHHHHHHHcC-CCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCC--C--cchHHHHHHHHH
Q 043830 1 STLQAIRFQLLE-ASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSI--H--RGEEKVMLAVHK 71 (248)
Q Consensus 1 s~~~~~~l~~~g-v~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~--~--~~~~~~ll~a~~ 71 (248)
|+..++.+.+.+ ++..++.+++|+ +|... .+ ......+..++ +.+++++++. . .|+.+.+++|+.
T Consensus 143 s~~~~~~~~~~~~~~~~~~~vi~ng-i~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~ 216 (365)
T cd03825 143 SRWLADCARSSSLFKGIPIEVIPNG-IDTTIFRP-----RDKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALK 216 (365)
T ss_pred hHHHHHHHHhccccCCCceEEeCCC-CcccccCC-----CcHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHH
Confidence 345566666654 788899999986 45432 11 12234454443 4455555433 2 467889999999
Q ss_pred HHHHh-CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC---hhHHHHHHhhCCEEEEcCccC
Q 043830 72 VLMQK-NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT---LGELRQLYKLTPIAVIGGSFL 147 (248)
Q Consensus 72 ~l~~~-~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~y~~ad~~~v~~s~~ 147 (248)
.+.++ .++++++++|.++... .. ++.. +|.+.+. ..++..+|+.||++ +.||..
T Consensus 217 ~l~~~~~~~~~~~i~G~~~~~~-~~-------~~~~-------------~v~~~g~~~~~~~~~~~~~~ad~~-l~ps~~ 274 (365)
T cd03825 217 RLAERWKDDIELVVFGASDPEI-PP-------DLPF-------------PVHYLGSLNDDESLALIYSAADVF-VVPSLQ 274 (365)
T ss_pred HhhhccCCCeEEEEeCCCchhh-hc-------cCCC-------------ceEecCCcCCHHHHHHHHHhCCEE-Eecccc
Confidence 88765 5789999999876531 10 2222 3444443 34789999999995 568888
Q ss_pred CCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-
Q 043830 148 PGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL- 226 (248)
Q Consensus 148 e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~- 226 (248)
|++ |.+++|||+||+|||+++. ++..+.+. +.+.|+++...|++++++++.++++|++.+.+|++++++++.+.
T Consensus 275 e~~-g~~~~Eam~~g~PvI~~~~-~~~~e~~~---~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 349 (365)
T cd03825 275 ENF-PNTAIEALACGTPVVAFDV-GGIPDIVD---HGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEF 349 (365)
T ss_pred ccc-cHHHHHHHhcCCCEEEecC-CCChhhee---CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 985 9999999999999998764 45555443 33355777778999999999999999999999999999988654
Q ss_pred -chhHHHHHHHHHHHH
Q 043830 227 -SSGIVANVWNLLNFH 241 (248)
Q Consensus 227 -~~~~~~~~l~~~~~~ 241 (248)
|+..+++++++|+++
T Consensus 350 s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 350 DSRVQAKRYLSLYEEL 365 (365)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 678899999988763
No 46
>PHA01633 putative glycosyl transferase group 1
Probab=99.87 E-value=1.7e-20 Score=161.02 Aligned_cols=202 Identities=17% Similarity=0.138 Sum_probs=133.3
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc----CCCeEEEEeCC--CcchHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL----AHRQVWMASSI--HRGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~----~~~~v~l~~~~--~~~~~~~ll~a~~~l 73 (248)
|+.+++.+.+.|++.+ +. +.| ++|... .+.. .....+++++ ++.+++++.|+ ..|+++.+++|++.+
T Consensus 100 S~~t~~~L~~~G~~~~-i~-I~~-GVD~~~f~p~~---~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L 173 (335)
T PHA01633 100 SKFSAENLQEVGLQVD-LP-VFH-GINFKIVENAE---KLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNEL 173 (335)
T ss_pred CHHHHHHHHHhCCCCc-ee-eeC-CCChhhcCccc---hhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHH
Confidence 7889999999999866 44 445 456542 2211 1123445443 34455555554 357889999999999
Q ss_pred HHhCCC----eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc-----ChhHHHHHHhhCCEEEEcC
Q 043830 74 MQKNPN----LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-----TLGELRQLYKLTPIAVIGG 144 (248)
Q Consensus 74 ~~~~~~----~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-----~~~~l~~~y~~ad~~~v~~ 144 (248)
.++.|+ ++++++|+ . ..+++++.. +|.|++ ..+++..+|+.||+ |+.|
T Consensus 174 ~~~~p~~~~~i~l~ivG~-----~----~~~~l~l~~-------------~V~f~g~~G~~~~~dl~~~y~~aDi-fV~P 230 (335)
T PHA01633 174 NTKYPDIAKKIHFFVISH-----K----QFTQLEVPA-------------NVHFVAEFGHNSREYIFAFYGAMDF-TIVP 230 (335)
T ss_pred HHhCCCccccEEEEEEcH-----H----HHHHcCCCC-------------cEEEEecCCCCCHHHHHHHHHhCCE-EEEC
Confidence 877775 57888874 1 224455543 344442 24689999999999 5678
Q ss_pred ccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHH-------------HHH--hcCCceEEEcCCHHHHHHHHHHhhhCH
Q 043830 145 SFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVS-------------AMQ--RLNPKSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 145 s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~-------------~~~--~~g~g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
|..||| |++++||||||+|||+++.+ +.+|+.. ... ++|.|+.+...|+++|+++|..+++..
T Consensus 231 S~~Egf-GlvlLEAMA~G~PVVas~~~-~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 231 SGTEGF-GMPVLESMAMGTPVIHQLMP-PLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQ 308 (335)
T ss_pred CccccC-CHHHHHHHHcCCCEEEccCC-CceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhcc
Confidence 889996 99999999999999987543 4444211 111 245556667789999999999986543
Q ss_pred HHHHHHHHHHHHHHHHh-chhHHHHH
Q 043830 210 RVLEAQQMAAKQAFCAL-SSGIVANV 234 (248)
Q Consensus 210 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (248)
+ ++.++.+++++++++ |+...+++
T Consensus 309 ~-~~~~~~~~~~~a~~f~~~~~~~~~ 333 (335)
T PHA01633 309 D-REERSMKLKELAKKYDIRNLYTRF 333 (335)
T ss_pred C-hhhhhHHHHHHHHhcCHHHHHHHh
Confidence 2 333466777888777 66555544
No 47
>PLN00142 sucrose synthase
Probab=99.87 E-value=1.5e-20 Score=175.30 Aligned_cols=178 Identities=10% Similarity=0.012 Sum_probs=132.5
Q ss_pred CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCC------C-----HHHHHHHHHhcCCceEEecccCCC
Q 043830 49 HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ------H-----GKEIAQKLQKEGEVVALRSRHEKL 115 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~------~-----~~~l~~~~~~~~l~~~~~~~~~~~ 115 (248)
+++++++.|+. .|+++.+|+|+..+.+..++++|+|+|++.+ . ..++.+++.++++...+++.|...
T Consensus 572 ~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~ 651 (815)
T PLN00142 572 KKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQT 651 (815)
T ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcC
Confidence 45677776653 4889999999998876677899999997621 1 134667788888875444433210
Q ss_pred CCCccEEEEcChhHHHHHHh-hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCC
Q 043830 116 MPRTNVYVVDTLGELRQLYK-LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSG 194 (248)
Q Consensus 116 ~~~~~v~~~~~~~~l~~~y~-~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~ 194 (248)
. ....+++..+|+ .+|+ |+.||++|+| |++++||||||+|||+++. ++.++++. ++.+|+++.+.|
T Consensus 652 ~-------~~~~~eLyr~iadaaDV-fVlPS~~EgF-GLvvLEAMA~GlPVVATdv-GG~~EIV~---dG~tG~LV~P~D 718 (815)
T PLN00142 652 N-------RVRNGELYRYIADTKGA-FVQPALYEAF-GLTVVEAMTCGLPTFATCQ-GGPAEIIV---DGVSGFHIDPYH 718 (815)
T ss_pred C-------cccHHHHHHHHHhhCCE-EEeCCcccCC-CHHHHHHHHcCCCEEEcCC-CCHHHHhc---CCCcEEEeCCCC
Confidence 0 001246666666 4688 5778999996 9999999999999999865 46666553 445678899999
Q ss_pred HHHHHHHHHHh----hhCHHHHHHHHHHHHHHHH-Hh-chhHHHHHHHHHH
Q 043830 195 KSELEEALSQL----FSDARVLEAQQMAAKQAFC-AL-SSGIVANVWNLLN 239 (248)
Q Consensus 195 ~~~l~~~i~~l----l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~ 239 (248)
+++++++|..+ ++|++.+++|+++|++++. .+ |+..+++++++..
T Consensus 719 ~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~ 769 (815)
T PLN00142 719 GDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGG 769 (815)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999998764 5799999999999999884 45 8888888888765
No 48
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.86 E-value=7.6e-20 Score=157.76 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=139.1
Q ss_pred cCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEE
Q 043830 11 LEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTII 84 (248)
Q Consensus 11 ~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvi 84 (248)
.+.+..++.+++|+ +|... .+. +. ...|..++ +.+++++.|+. .|+.+.+++|+..+.++.+++++++
T Consensus 166 ~~~~~~~~~vi~~~-~~~~~~~~~---~~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i 239 (375)
T cd03821 166 RLGLKAPIAVIPNG-VDIPPFAAL---PS--RGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVI 239 (375)
T ss_pred hhCCcccEEEcCCC-cChhccCcc---hh--hhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEE
Confidence 34566789999985 34332 111 00 11133332 45666665543 4778899999999988889999999
Q ss_pred ecCCCCCH-HHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhh
Q 043830 85 VPRHPQHG-KEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAA 161 (248)
Q Consensus 85 vG~~~~~~-~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~ 161 (248)
+|.++... ..++..+.++++... |.+.+.. .++..+|+.||++ +.+|..|++ |++++|||+|
T Consensus 240 ~G~~~~~~~~~~~~~~~~~~~~~~-------------v~~~g~~~~~~~~~~~~~adv~-v~ps~~e~~-~~~~~Eama~ 304 (375)
T cd03821 240 AGPDEGGYRAELKQIAAALGLEDR-------------VTFTGMLYGEDKAAALADADLF-VLPSHSENF-GIVVAEALAC 304 (375)
T ss_pred ECCCCcchHHHHHHHHHhcCccce-------------EEEcCCCChHHHHHHHhhCCEE-EeccccCCC-CcHHHHHHhc
Confidence 99875533 344554577777543 4444433 4899999999995 568888986 9999999999
Q ss_pred CCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-Hh-chhHHHHHH
Q 043830 162 GCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFC-AL-SSGIVANVW 235 (248)
Q Consensus 162 G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l 235 (248)
|+|||+++.+ +..+.+.. +.|+ +...+.++++++|.++++|++.+++|++++++++. ++ |+..+++++
T Consensus 305 G~PvI~~~~~-~~~~~~~~----~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 305 GTPVVTTDKV-PWQELIEY----GCGW-VVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred CCCEEEcCCC-CHHHHhhc----CceE-EeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9999997654 55554432 3334 44467799999999999999999999999999964 44 566655543
No 49
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.86 E-value=2.4e-20 Score=161.27 Aligned_cols=196 Identities=15% Similarity=0.122 Sum_probs=147.0
Q ss_pred CHHHHHHHHHc-CCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCC-C-cchHHHHHHHHHHHHHh
Q 043830 1 STLQAIRFQLL-EASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSI-H-RGEEKVMLAVHKVLMQK 76 (248)
Q Consensus 1 s~~~~~~l~~~-gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~-~-~~~~~~ll~a~~~l~~~ 76 (248)
|+..++.+.+. |.+..++.+++|+ .|... .+. . .....+...+++.|+ . .|+++.+++++..+.+.
T Consensus 138 s~~~~~~l~~~~~~~~~~~~vi~~~-~d~~~~~~~-----~----~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~ 207 (355)
T cd03799 138 SEYNRQQLIRLLGCDPDKIHVVHCG-VDLERFPPR-----P----PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDR 207 (355)
T ss_pred CHHHHHHHHHhcCCCcccEEEEeCC-cCHHHcCCc-----c----ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhc
Confidence 56778888775 8888999999985 34332 111 0 001123445555443 3 47789999999998877
Q ss_pred CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccC------C
Q 043830 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFL------P 148 (248)
Q Consensus 77 ~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~------e 148 (248)
.++++++++|.++.. +++++.+.++++... |.+.+.. .++..+|+.||++ +.+|.. |
T Consensus 208 ~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~-------------v~~~g~~~~~~l~~~~~~adi~-l~~s~~~~~~~~e 272 (355)
T cd03799 208 GIDFRLDIVGDGPLR-DELEALIAELGLEDR-------------VTLLGAKSQEEVRELLRAADLF-VLPSVTAADGDRE 272 (355)
T ss_pred CCCeEEEEEECCccH-HHHHHHHHHcCCCCe-------------EEECCcCChHHHHHHHHhCCEE-EecceecCCCCcc
Confidence 789999999998876 788888888877543 4444433 6899999999995 567777 8
Q ss_pred CCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh
Q 043830 149 GLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 149 ~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
++ |.+++|||++|+|||+++. ++.+++++ +...|+.+..+|+++++++|.++++|++.+.+|++++++++.+.
T Consensus 273 ~~-~~~~~Ea~a~G~Pvi~~~~-~~~~~~i~---~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~ 345 (355)
T cd03799 273 GL-PVVLMEAMAMGLPVISTDV-SGIPELVE---DGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEE 345 (355)
T ss_pred Cc-cHHHHHHHHcCCCEEecCC-CCcchhhh---CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 85 8999999999999998764 35555443 33355777778999999999999999999999999999988654
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.86 E-value=7.5e-20 Score=157.43 Aligned_cols=203 Identities=16% Similarity=0.105 Sum_probs=145.2
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNP 78 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~ 78 (248)
|+..++.+.+.+.++.++.+++|+ +|....... . . ....+++++++.|+. .|+.+.+++++..+.+ +
T Consensus 151 s~~~~~~~~~~~~~~~~~~vi~n~-~~~~~~~~~---~--~---~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~ 219 (359)
T cd03823 151 SRFLLDRYVANGLFAEKISVIRNG-IDLDRAKRP---R--R---APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--G 219 (359)
T ss_pred CHHHHHHHHHcCCCccceEEecCC-cChhhcccc---c--c---CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--c
Confidence 567788888888777889999986 344321100 0 0 011244555555443 4778899999998865 7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCcc-CCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSF-LPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~-~e~~gg~~~ 155 (248)
+++|+++|.++.. ....... +.. .+|.+.+.. .++..+|+.||+++ .||. .|++ |+++
T Consensus 220 ~~~l~i~G~~~~~-~~~~~~~---~~~-------------~~v~~~g~~~~~~~~~~~~~ad~~i-~ps~~~e~~-~~~~ 280 (359)
T cd03823 220 DIELVIVGNGLEL-EEESYEL---EGD-------------PRVEFLGAYPQEEIDDFYAEIDVLV-VPSIWPENF-PLVI 280 (359)
T ss_pred CcEEEEEcCchhh-hHHHHhh---cCC-------------CeEEEeCCCCHHHHHHHHHhCCEEE-EcCcccCCC-ChHH
Confidence 8999999998765 2222222 222 345666654 79999999999965 4664 6885 8999
Q ss_pred HHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 043830 156 SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVW 235 (248)
Q Consensus 156 lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (248)
+|||+||+|||+++.+ +..+. +.+...|..+...|.++++++|.++++|++.++.|++++++.... +.+++++.
T Consensus 281 ~Ea~a~G~Pvi~~~~~-~~~e~---i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 354 (359)
T cd03823 281 REALAAGVPVIASDIG-GMAEL---VRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSI--EDQAEEYL 354 (359)
T ss_pred HHHHHCCCCEEECCCC-CHHHH---hcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH--HHHHHHHH
Confidence 9999999999997643 44443 333345688888999999999999999999999999999887654 67777777
Q ss_pred HHHH
Q 043830 236 NLLN 239 (248)
Q Consensus 236 ~~~~ 239 (248)
++|+
T Consensus 355 ~~~~ 358 (359)
T cd03823 355 KLYR 358 (359)
T ss_pred HHhh
Confidence 7765
No 51
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.86 E-value=3.7e-20 Score=159.78 Aligned_cols=204 Identities=17% Similarity=0.128 Sum_probs=145.3
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC--CCeEEEEeCCC--cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA--HRQVWMASSIH--RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~--~~~v~l~~~~~--~~~~~~ll~a~~~l~~ 75 (248)
|+..++.+...+. .++.+++|+ +|... .+.. . ....+..++ +++++++.|+. .++.+.+++++..+.+
T Consensus 152 s~~~~~~~~~~~~--~~~~~~~~g-~~~~~~~~~~---~-~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~ 224 (364)
T cd03814 152 SPSLADELRARGF--RRVRLWPRG-VDTELFHPRR---R-DEALRARLGPPDRPVLLYVGRLAPEKNLEALLDADLPLRR 224 (364)
T ss_pred CHHHHHHHhccCC--CceeecCCC-ccccccCccc---c-cHHHHHHhCCCCCeEEEEEeccccccCHHHHHHHHHHhhh
Confidence 3455554544444 468888865 44432 2111 1 112222332 44566665543 4778899999999987
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
+ ++++++|+|+++.. +.++ +.. .+|.+.+ +.+++..+|+.||++ +.+|..|++ |+
T Consensus 225 ~-~~~~l~i~G~~~~~-~~~~------~~~-------------~~v~~~g~~~~~~~~~~~~~~d~~-l~~s~~e~~-~~ 281 (364)
T cd03814 225 R-PPVRLVIVGDGPAR-ARLE------ARY-------------PNVHFLGFLDGEELAAAYASADVF-VFPSRTETF-GL 281 (364)
T ss_pred c-CCceEEEEeCCchH-HHHh------ccC-------------CcEEEEeccCHHHHHHHHHhCCEE-EECcccccC-Cc
Confidence 7 89999999998764 3333 111 3466666 457899999999995 567877885 89
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHHH
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIVA 232 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~ 232 (248)
+++|||+||+|||+++.+ +..+.. .+.+.|.++...|.++++++|.++++|++.+++|++++++.+.++ |+..++
T Consensus 282 ~~lEa~a~g~PvI~~~~~-~~~~~i---~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (364)
T cd03814 282 VVLEAMASGLPVVAPDAG-GPADIV---TDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLD 357 (364)
T ss_pred HHHHHHHcCCCEEEcCCC-Cchhhh---cCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 999999999999998654 454443 334566778889999999999999999999999999999988766 778888
Q ss_pred HHHHHH
Q 043830 233 NVWNLL 238 (248)
Q Consensus 233 ~~l~~~ 238 (248)
++++.|
T Consensus 358 ~~~~~~ 363 (364)
T cd03814 358 NLLEAY 363 (364)
T ss_pred HHHHhh
Confidence 877766
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.86 E-value=7.4e-20 Score=156.71 Aligned_cols=203 Identities=16% Similarity=0.096 Sum_probs=141.6
Q ss_pred CHHHHHHHHHcCCC--CCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEAS--PFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~--~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~ 75 (248)
|+..++.+.+.+.. ..++.+.+++ ++... .+.. . . ...+++++++.|+. .|+.+.+++++..+.+
T Consensus 146 s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~--~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~ 215 (359)
T cd03808 146 NEDDRDLALKLGIIKKKKTVLIPGSG-VDLDRFSPSP---E--P----IPEDDPVFLFVARLLKDKGIDELLEAARILKA 215 (359)
T ss_pred CHHHHHHHHHhcCCCcCceEEecCCC-CChhhcCccc---c--c----cCCCCcEEEEEeccccccCHHHHHHHHHHHHh
Confidence 56777888777654 3445555543 44332 1100 0 0 01234556655432 4778899999999987
Q ss_pred hCCCeEEEEecCCCCCHHHHHHH-HHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQK-LQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
.+++++|+|+|.++.. ...... +.+.+.. .+|.+.+..+++..+|+.||++ +.+|..|++ |.+
T Consensus 216 ~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~-------------~~v~~~g~~~~~~~~~~~adi~-i~ps~~e~~-~~~ 279 (359)
T cd03808 216 KGPNVRLLLVGDGDEE-NPAAILEIEKLGLE-------------GRVEFLGFRDDVPELLAAADVF-VLPSYREGL-PRV 279 (359)
T ss_pred cCCCeEEEEEcCCCcc-hhhHHHHHHhcCCc-------------ceEEEeeccccHHHHHHhccEE-EecCcccCc-chH
Confidence 7889999999998765 333332 4444433 3566677677999999999995 567877885 899
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh--chhHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSGIVA 232 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~ 232 (248)
++|||++|+|||+++.+ +..+.+ .+.+.|+.+..+|+++++++|..++.|++.+++|++++++++.+. ++..++
T Consensus 280 ~~Ea~~~G~Pvi~s~~~-~~~~~i---~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 355 (359)
T cd03808 280 LLEAMAMGRPVIATDVP-GCREAV---IDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVK 355 (359)
T ss_pred HHHHHHcCCCEEEecCC-Cchhhh---hcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999997654 444433 334556777778999999999999999999999999999996543 344444
Q ss_pred H
Q 043830 233 N 233 (248)
Q Consensus 233 ~ 233 (248)
+
T Consensus 356 ~ 356 (359)
T cd03808 356 K 356 (359)
T ss_pred H
Confidence 3
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.86 E-value=9.7e-20 Score=157.22 Aligned_cols=209 Identities=18% Similarity=0.160 Sum_probs=149.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+..++.+.+.|.+. ++.+++|+ +|... .+. .....+..++ +.+++++.|+. .++.+.+++++..+.
T Consensus 156 s~~~~~~~~~~~~~~-~~~vi~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~ 228 (374)
T cd03817 156 SEKIADLLREYGVKR-PIEVIPTG-IDLDRFEPV-----DGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLL 228 (374)
T ss_pred cHHHHHHHHhcCCCC-ceEEcCCc-cchhccCcc-----chhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHH
Confidence 456777888888754 58888874 44432 111 1111233332 44556655542 467889999999988
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLAG 152 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~gg 152 (248)
++.++++++++|+++.. +.+++.++++++.. +|.+.+. .+++..+|+.||++ +.+|..|++ |
T Consensus 229 ~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~~~ad~~-l~~s~~e~~-~ 292 (374)
T cd03817 229 KEEPDVKLVIVGDGPER-EELEELARELGLAD-------------RVIFTGFVPREELPDYYKAADLF-VFASTTETQ-G 292 (374)
T ss_pred HhCCCeEEEEEeCCchH-HHHHHHHHHcCCCC-------------cEEEeccCChHHHHHHHHHcCEE-EecccccCc-C
Confidence 77789999999998765 77888887777653 4455553 36899999999995 567877875 8
Q ss_pred CCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHH
Q 043830 153 HNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVA 232 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (248)
++++|||+||+|||+++.+ ...+.+ .+.+.|+.+...+. +++++|..+++|++.+++|++++++.+.++. ..+
T Consensus 293 ~~~~Ea~~~g~PvI~~~~~-~~~~~i---~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 365 (374)
T cd03817 293 LVLLEAMAAGLPVVAVDAP-GLPDLV---ADGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEKFS--FAK 365 (374)
T ss_pred hHHHHHHHcCCcEEEeCCC-Chhhhe---ecCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HHH
Confidence 9999999999999987654 554443 33345577766666 9999999999999999999999999987643 445
Q ss_pred HHHHHHH
Q 043830 233 NVWNLLN 239 (248)
Q Consensus 233 ~~l~~~~ 239 (248)
++.+.|+
T Consensus 366 ~~~~~~~ 372 (374)
T cd03817 366 KVEKLYE 372 (374)
T ss_pred HHHHHHh
Confidence 5555554
No 54
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.86 E-value=1.4e-20 Score=147.34 Aligned_cols=154 Identities=22% Similarity=0.321 Sum_probs=120.1
Q ss_pred CCeEEEEeCCC--cchHHHHHHHHHHHHHh-CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc
Q 043830 49 HRQVWMASSIH--RGEEKVMLAVHKVLMQK-NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD 125 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~ll~a~~~l~~~-~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~ 125 (248)
+++++++.++. .|+++.+++|+..+.++ .++++++|+|.++.. ..+...+..+++.. ++.+.+
T Consensus 14 ~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~-------------~i~~~~ 79 (172)
T PF00534_consen 14 KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYK-KELKNLIEKLNLKE-------------NIIFLG 79 (172)
T ss_dssp TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHH-HHHHHHHHHTTCGT-------------TEEEEE
T ss_pred CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccc-cccccccccccccc-------------cccccc
Confidence 56677766543 47889999999998764 789999999965543 67888888887752 455666
Q ss_pred Ch--hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHH
Q 043830 126 TL--GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALS 203 (248)
Q Consensus 126 ~~--~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~ 203 (248)
.. .++..+|+.||++ +.+|..|++ |.+++|||++|+|||+++. +...+. +.+...|+++...|+++++++|.
T Consensus 80 ~~~~~~l~~~~~~~di~-v~~s~~e~~-~~~~~Ea~~~g~pvI~~~~-~~~~e~---~~~~~~g~~~~~~~~~~l~~~i~ 153 (172)
T PF00534_consen 80 YVPDDELDELYKSSDIF-VSPSRNEGF-GLSLLEAMACGCPVIASDI-GGNNEI---INDGVNGFLFDPNDIEELADAIE 153 (172)
T ss_dssp SHSHHHHHHHHHHTSEE-EE-BSSBSS--HHHHHHHHTT-EEEEESS-THHHHH---SGTTTSEEEESTTSHHHHHHHHH
T ss_pred cccccccccccccceec-ccccccccc-ccccccccccccceeeccc-cCCcee---eccccceEEeCCCCHHHHHHHHH
Confidence 55 4999999999995 567877885 8999999999999999763 344443 33444568888899999999999
Q ss_pred HhhhCHHHHHHHHHHHHHH
Q 043830 204 QLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 204 ~ll~~~~~~~~~~~~~~~~ 222 (248)
++++|++.++.|+++++++
T Consensus 154 ~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 154 KLLNDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHhcCC
Confidence 9999999999999999875
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.86 E-value=1.2e-19 Score=155.33 Aligned_cols=211 Identities=18% Similarity=0.191 Sum_probs=151.5
Q ss_pred CHHHHHHHHHcC-CCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc---CCCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLE-ASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL---AHRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~~g-v~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~---~~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+.+++.+.+.+ .+++++.+++|+. +... .+. . ...+... .+.+++++.|+. .++++.+++++..+
T Consensus 152 s~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-----~-~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~ 224 (374)
T cd03801 152 SEATREELRELGGVPPEKITVIPNGV-DTERFRPA-----P-RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKL 224 (374)
T ss_pred cHHHHHHHHhcCCCCCCcEEEecCcc-cccccCcc-----c-hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHH
Confidence 567788887764 4447899999853 3322 110 0 1122222 244556655442 46788999999999
Q ss_pred HHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCCC
Q 043830 74 MQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGLA 151 (248)
Q Consensus 74 ~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~g 151 (248)
.+..++++++++|.++.. ..+++.++++++.. +|.+.+.. +++..+|+.||++ +.+|..+++
T Consensus 225 ~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~~~~di~-i~~~~~~~~- 288 (374)
T cd03801 225 RKEYPDVRLVIVGDGPLR-EELEALAAELGLGD-------------RVTFLGFVPDEDLPALYAAADVF-VLPSLYEGF- 288 (374)
T ss_pred hhhcCCeEEEEEeCcHHH-HHHHHHHHHhCCCc-------------ceEEEeccChhhHHHHHHhcCEE-Eecchhccc-
Confidence 888889999999976554 67777777776653 45555544 7999999999995 557776774
Q ss_pred CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh--chh
Q 043830 152 GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSG 229 (248)
Q Consensus 152 g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~ 229 (248)
|.+++|||++|+|||+++. +++.+... +.+.|..+...|+++++++|.++++|++.+++|++++++...+. |+.
T Consensus 289 ~~~~~Ea~~~g~pvI~~~~-~~~~~~~~---~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (374)
T cd03801 289 GLVLLEAMAAGLPVVASDV-GGIPEVVE---DGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDR 364 (374)
T ss_pred cchHHHHHHcCCcEEEeCC-CChhHHhc---CCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999998765 35554432 24455777778899999999999999999999999999665443 677
Q ss_pred HHHHHHHHH
Q 043830 230 IVANVWNLL 238 (248)
Q Consensus 230 ~~~~~l~~~ 238 (248)
.++++.+.|
T Consensus 365 ~~~~~~~~~ 373 (374)
T cd03801 365 VAARTEEVY 373 (374)
T ss_pred HHHHHHHhh
Confidence 777766655
No 56
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.85 E-value=3e-20 Score=165.57 Aligned_cols=199 Identities=14% Similarity=0.069 Sum_probs=136.1
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~ 77 (248)
|+.+++.+.+.+...+++.|++|+ .|... .+.+ . ....+.+++++.++. .|+++.+|+|+..+.+..
T Consensus 197 S~~~~~~~~~~~~~~~~~~vi~~g-vd~~~~~~~~---~------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~ 266 (419)
T cd03806 197 STWTRNHIRSLWKRNTKPSIVYPP-CDVEELLKLP---L------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRL 266 (419)
T ss_pred CHHHHHHHHHHhCcCCCcEEEcCC-CCHHHhcccc---c------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhC
Confidence 677888887765444689999875 34331 1110 0 001234566665543 478889999999998776
Q ss_pred CC-----eEEEEecCCCC-----CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCc
Q 043830 78 PN-----LVTIIVPRHPQ-----HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 78 ~~-----~~lvivG~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s 145 (248)
|+ ++++|+|++.. +.++++++++++++.+ +|.|.+. .+++..+|+.||++ +.+|
T Consensus 267 ~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~-------------~V~f~g~v~~~~l~~~l~~adv~-v~~s 332 (419)
T cd03806 267 PEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLED-------------KVEFVVNAPFEELLEELSTASIG-LHTM 332 (419)
T ss_pred cccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCC-------------eEEEecCCCHHHHHHHHHhCeEE-EECC
Confidence 54 99999998642 3467888888888864 3455543 47899999999995 5678
Q ss_pred cCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHH-HHHHHHHHHHHHHH
Q 043830 146 FLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDAR-VLEAQQMAAKQAFC 224 (248)
Q Consensus 146 ~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~~~~~~~ 224 (248)
..|+| |++++||||||+|||+++.++...+++....+..+|++ +.|+++++++|.+++++++ .++.|++++++...
T Consensus 333 ~~E~F-gi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l--~~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~ 409 (419)
T cd03806 333 WNEHF-GIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFL--ASTAEEYAEAIEKILSLSEEERLRIRRAARSSVK 409 (419)
T ss_pred ccCCc-ccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEE--eCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88987 99999999999999987654333333321002344454 4699999999999999654 55566666555444
Q ss_pred Hh
Q 043830 225 AL 226 (248)
Q Consensus 225 ~~ 226 (248)
++
T Consensus 410 ~f 411 (419)
T cd03806 410 RF 411 (419)
T ss_pred hh
Confidence 44
No 57
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.85 E-value=1.3e-19 Score=159.56 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=137.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeE-EEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQV-WMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v-~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+..++.+.+.|++++||.++|++..+....+ .....++++++ ++++ ++++|.. .+++..+++++.
T Consensus 155 s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~-----~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~--- 226 (380)
T PRK13609 155 TDHVKKVLVDIGVPPEQVVETGIPIRSSFELK-----INPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLM--- 226 (380)
T ss_pred CHHHHHHHHHcCCChhHEEEECcccChHHcCc-----CCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHh---
Confidence 57788999999999999999998642211111 11234566664 4454 4444443 256667777753
Q ss_pred HhCCCeEEEEe-cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 75 QKNPNLVTIIV-PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 75 ~~~~~~~lviv-G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
+ .++++++++ |+++...+++++++++.+ .+|.+.+...+++++|+.||++ +. ++ ||.
T Consensus 227 ~-~~~~~~viv~G~~~~~~~~l~~~~~~~~---------------~~v~~~g~~~~~~~l~~~aD~~-v~----~~-gg~ 284 (380)
T PRK13609 227 S-VPDLQVVVVCGKNEALKQSLEDLQETNP---------------DALKVFGYVENIDELFRVTSCM-IT----KP-GGI 284 (380)
T ss_pred h-CCCcEEEEEeCCCHHHHHHHHHHHhcCC---------------CcEEEEechhhHHHHHHhccEE-Ee----CC-Cch
Confidence 2 378888877 443322256666554432 2567778777899999999985 42 33 588
Q ss_pred CHHHHHhhCCcEEECCC-CCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHH
Q 043830 154 NISEAAAAGCAVLTGPH-IGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVA 232 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~-~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (248)
+++|||+||+|||++.. ++.-.+..+.+.+.| +++.+.|+++|+++|.++++|++.+++|++++++.... .+++
T Consensus 285 t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G--~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~---~s~~ 359 (380)
T PRK13609 285 TLSEAAALGVPVILYKPVPGQEKENAMYFERKG--AAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLP---EPAD 359 (380)
T ss_pred HHHHHHHhCCCEEECCCCCCcchHHHHHHHhCC--cEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCC---chHH
Confidence 89999999999998643 322223344454445 66777999999999999999999999999998876543 3444
Q ss_pred HHHHHHHHH
Q 043830 233 NVWNLLNFH 241 (248)
Q Consensus 233 ~~l~~~~~~ 241 (248)
++++.+.++
T Consensus 360 ~i~~~i~~~ 368 (380)
T PRK13609 360 HIVDDILAE 368 (380)
T ss_pred HHHHHHHHh
Confidence 454444443
No 58
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.85 E-value=1.7e-19 Score=155.98 Aligned_cols=199 Identities=18% Similarity=0.069 Sum_probs=140.3
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~ 77 (248)
|+..++.+...+-.++++.+++|+ +|... .+.. ...........+.+++++.|+. .|+.+.+++|+.++.
T Consensus 145 s~~~~~~~~~~~~~~~~~~~i~~g-i~~~~~~~~~---~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~--- 217 (357)
T cd03795 145 SPNYAETSPVLRRFRDKVRVIPLG-LDPARYPRPD---ALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP--- 217 (357)
T ss_pred cHHHHHHHHHhcCCccceEEecCC-CChhhcCCcc---hhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc---
Confidence 456666666655444789999986 44432 1110 0011000011245566665543 477889999998774
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCcc--CCCCCCC
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSF--LPGLAGH 153 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~--~e~~gg~ 153 (248)
+++++|+|+++.. ..+++.+++.++.. +|.+.+.. .++..+|+.||+++ .+|. .|++ |.
T Consensus 218 -~~~l~i~G~g~~~-~~~~~~~~~~~~~~-------------~V~~~g~v~~~~~~~~~~~ad~~i-~ps~~~~e~~-g~ 280 (357)
T cd03795 218 -DAPLVIVGEGPLE-AELEALAAALGLLD-------------RVRFLGRLDDEEKAALLAACDVFV-FPSVERSEAF-GI 280 (357)
T ss_pred -CcEEEEEeCChhH-HHHHHHHHhcCCcc-------------eEEEcCCCCHHHHHHHHHhCCEEE-eCCccccccc-ch
Confidence 7999999998765 67888887777654 45555543 57999999999965 4554 4775 89
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
+++|||++|+|||+++.+ ...+.... ..+.|+.+.++|+++++++|.++++|++.++.|++++++++.+.
T Consensus 281 ~~~Ea~~~g~Pvi~~~~~-~~~~~i~~--~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 350 (357)
T cd03795 281 VLLEAMAFGKPVISTEIG-TGGSYVNL--HGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEE 350 (357)
T ss_pred HHHHHHHcCCCEEecCCC-CchhHHhh--CCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence 999999999999997654 44443322 24556777889999999999999999999999999999998765
No 59
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.84 E-value=2.2e-19 Score=158.71 Aligned_cols=211 Identities=11% Similarity=0.075 Sum_probs=140.3
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeE-EEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQV-WMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v-~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+.+++.+.+.|++++||.++|+|. +..+... .....++.+++ ++++ ++++|+. .++++.+++++.
T Consensus 155 s~~~~~~l~~~gi~~~ki~v~GiPv-~~~f~~~----~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~--- 226 (391)
T PRK13608 155 TKETKQDFIDVGIDPSTVKVTGIPI-DNKFETP----IDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDIL--- 226 (391)
T ss_pred CHHHHHHHHHcCCCHHHEEEECeec-ChHhccc----ccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHH---
Confidence 5788899999999999999999863 2222110 11344555554 4454 4445443 367788888752
Q ss_pred HhCCCeEEEEe-cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 75 QKNPNLVTIIV-PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 75 ~~~~~~~lviv-G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
+..++++++++ |+++...+++++. .+.. .+|.+.|...+++++|+.||+++. ++ ||.
T Consensus 227 ~~~~~~~~vvv~G~~~~l~~~l~~~---~~~~-------------~~v~~~G~~~~~~~~~~~aDl~I~-----k~-gg~ 284 (391)
T PRK13608 227 AKSANAQVVMICGKSKELKRSLTAK---FKSN-------------ENVLILGYTKHMNEWMASSQLMIT-----KP-GGI 284 (391)
T ss_pred hcCCCceEEEEcCCCHHHHHHHHHH---hccC-------------CCeEEEeccchHHHHHHhhhEEEe-----CC-chH
Confidence 34577888666 4432211233332 2211 246677777899999999999653 33 588
Q ss_pred CHHHHHhhCCcEEECCCCCChH-HHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHH
Q 043830 154 NISEAAAAGCAVLTGPHIGHYS-NMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIV 231 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~-~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (248)
+++|||++|+|+|+.+..++-. +....+.+.| +++.+.|+++++++|.++++|++.+++|++++++....+ +...+
T Consensus 285 tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G--~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~ 362 (391)
T PRK13608 285 TISEGLARCIPMIFLNPAPGQELENALYFEEKG--FGKIADTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTIC 362 (391)
T ss_pred HHHHHHHhCCCEEECCCCCCcchhHHHHHHhCC--cEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999964322211 2344455555 566778999999999999999999999999999986554 45556
Q ss_pred HHHHHHHHHHhh
Q 043830 232 ANVWNLLNFHVF 243 (248)
Q Consensus 232 ~~~l~~~~~~~~ 243 (248)
+.+++.+.....
T Consensus 363 ~~l~~l~~~~~~ 374 (391)
T PRK13608 363 RDLLDLIGHSSQ 374 (391)
T ss_pred HHHHHHhhhhhh
Confidence 666666554433
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.84 E-value=6.1e-19 Score=151.62 Aligned_cols=213 Identities=17% Similarity=0.171 Sum_probs=151.6
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc-CCCeEEEEeCCC--cchHHHHHHHHHHHHHh
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL-AHRQVWMASSIH--RGEEKVMLAVHKVLMQK 76 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~-~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~ 76 (248)
|+..++.+.+.+++..++.+++|+ +|... .+.. . ...-+... .+.+++++.|+. .++.+.+++++..+.+.
T Consensus 156 s~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~--~--~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~ 230 (377)
T cd03798 156 SEALADELKALGIDPEKVTVIPNG-VDTERFSPAD--R--AEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKK 230 (377)
T ss_pred CHHHHHHHHHhcCCCCceEEcCCC-cCcccCCCcc--h--HHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhc
Confidence 567888888877888999999985 34332 1110 0 01100011 244556655543 46788999999999877
Q ss_pred CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 77 ~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
+++++++|+|.++.. ..+.+.+++.++.. +|.+.+. ..++..+|+.||++ +.+|..+++ |.+
T Consensus 231 ~~~~~l~i~g~~~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~~~ad~~-i~~~~~~~~-~~~ 294 (377)
T cd03798 231 RPDVHLVIVGDGPLR-EALEALAAELGLED-------------RVTFLGAVPHEEVPAYYAAADVF-VLPSLREGF-GLV 294 (377)
T ss_pred CCCeEEEEEcCCcch-HHHHHHHHhcCCcc-------------eEEEeCCCCHHHHHHHHHhcCee-ecchhhccC-ChH
Confidence 889999999998765 67788877776653 3445443 36899999999995 567777875 899
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh--chhHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSGIVA 232 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~ 232 (248)
++|||++|+|||+++.+ +..+.. .+...|..+..+|+++++++|.++++++.. ++++++++.+.+. |+..++
T Consensus 295 ~~Ea~~~G~pvI~~~~~-~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~ 368 (377)
T cd03798 295 LLEAMACGLPVVATDVG-GIPEII---TDGENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAE 368 (377)
T ss_pred HHHHHhcCCCEEEecCC-ChHHHh---cCCcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHH
Confidence 99999999999987654 555443 334445777789999999999999999887 6666666666443 677777
Q ss_pred HHHHHHHH
Q 043830 233 NVWNLLNF 240 (248)
Q Consensus 233 ~~l~~~~~ 240 (248)
++.+.|++
T Consensus 369 ~~~~~~~~ 376 (377)
T cd03798 369 RLLELYRE 376 (377)
T ss_pred HHHHHHhh
Confidence 77777664
No 61
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.84 E-value=3.1e-19 Score=152.31 Aligned_cols=199 Identities=16% Similarity=0.104 Sum_probs=144.2
Q ss_pred CHHHHHHHHHc-CCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc-CCCeEEEEeCCC--cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLL-EASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL-AHRQVWMASSIH--RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~-gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~-~~~~v~l~~~~~--~~~~~~ll~a~~~l~~ 75 (248)
|+..++.+.+. +.+.+++.+++|+ ++... .+.. . ... +... .++.++++.|+. .|+.+.+++++..+..
T Consensus 143 s~~~~~~~~~~~~~~~~~~~vi~~~-~~~~~~~~~~---~-~~~-~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~ 216 (353)
T cd03811 143 SEGVKEDLLKLLGIPPDKIEVIYNP-IDIEEIRALA---E-EPL-ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK 216 (353)
T ss_pred ccchhhhHHHhhcCCccccEEecCC-cChhhcCccc---c-hhh-hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh
Confidence 45677778765 4557889999986 34332 1110 0 000 1111 245566665543 4678899999999987
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
..++++|+|+|.++.. +.+++.+.++++.. +|.+.+...++..+|+.||++ +.+|..|++ |.++
T Consensus 217 ~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~~d~~-i~ps~~e~~-~~~~ 280 (353)
T cd03811 217 EGPDARLVILGDGPLR-EELEALAKELGLAD-------------RVHFLGFQSNPYPYLKAADLF-VLSSRYEGF-PNVL 280 (353)
T ss_pred cCCCceEEEEcCCccH-HHHHHHHHhcCCCc-------------cEEEecccCCHHHHHHhCCEE-EeCcccCCC-CcHH
Confidence 7789999999998765 77888888887653 456666667899999999995 567877885 8999
Q ss_pred HHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHH---HHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 043830 156 SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSEL---EEALSQLFSDARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 156 lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l---~~~i~~ll~~~~~~~~~~~~~~~~~~~ 225 (248)
+|||++|+|||+++.+ +..+.+ .+...|+++..+|.+.+ .+.+..++.+++.+++|++++++.+.+
T Consensus 281 ~Ea~~~G~PvI~~~~~-~~~e~i---~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 349 (353)
T cd03811 281 LEAMALGTPVVATDCP-GPREIL---EDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAR 349 (353)
T ss_pred HHHHHhCCCEEEcCCC-ChHHHh---cCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 9999999999997654 554443 34455677888899998 788888889999999999977766543
No 62
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.84 E-value=4.5e-19 Score=153.55 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=144.4
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhc--CCCeEEEEeCCC--cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASL--AHRQVWMASSIH--RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~--~~~~v~l~~~~~--~~~~~~ll~a~~~l~~ 75 (248)
|+..++.+...+.+..++.+++|+ ++.. ..+.. .....+... .++.++++.|+. .++.+.+++++..+.+
T Consensus 173 s~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~ 247 (394)
T cd03794 173 SPGMREYLVRRGVPPEKISVIPNG-VDLELFKPPP----ADESLRKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKD 247 (394)
T ss_pred CHHHHHHHHhcCCCcCceEEcCCC-CCHHHcCCcc----chhhhhhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhh
Confidence 566777777778888999999986 3332 11110 001111111 245566666553 4778899999999877
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCC-C-
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGL-A- 151 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~-g- 151 (248)
. ++++++|+|+++.. +.+.+.+...+++ +|.+.+. .+++..+|+.||+++ .+|..+++ +
T Consensus 248 ~-~~~~l~i~G~~~~~-~~~~~~~~~~~~~--------------~v~~~g~~~~~~~~~~~~~~di~i-~~~~~~~~~~~ 310 (394)
T cd03794 248 R-PDIRFLIVGDGPEK-EELKELAKALGLD--------------NVTFLGRVPKEELPELLAAADVGL-VPLKPGPAFEG 310 (394)
T ss_pred c-CCeEEEEeCCcccH-HHHHHHHHHcCCC--------------cEEEeCCCChHHHHHHHHhhCeeE-EeccCcccccc
Confidence 6 88999999998765 6777766655553 3444443 368999999999965 56665542 1
Q ss_pred --CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-Hh-c
Q 043830 152 --GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFC-AL-S 227 (248)
Q Consensus 152 --g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~-~ 227 (248)
+.+++|||++|+|||+++.+ +..+... +.+.|..+..+|+++++++|.++++|++.+++|++++++++. .+ |
T Consensus 311 ~~p~~~~Ea~~~G~pvi~~~~~-~~~~~~~---~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~ 386 (394)
T cd03794 311 VSPSKLFEYMAAGKPVLASVDG-ESAELVE---EAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSR 386 (394)
T ss_pred cCchHHHHHHHCCCcEEEecCC-Cchhhhc---cCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcH
Confidence 33479999999999998765 4444332 334557777789999999999999999999999999999887 44 4
Q ss_pred hhHHHH
Q 043830 228 SGIVAN 233 (248)
Q Consensus 228 ~~~~~~ 233 (248)
+..+++
T Consensus 387 ~~~~~~ 392 (394)
T cd03794 387 EKLAER 392 (394)
T ss_pred HHHHHh
Confidence 554443
No 63
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.83 E-value=9.7e-20 Score=162.11 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=120.1
Q ss_pred eEEEEeCC--CcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 51 QVWMASSI--HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 51 ~v~l~~~~--~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
+++++.|+ +.|+++.+|+|+..+.+..|+++|+|+|+||++ +++++++.++++...+ + .+. .
T Consensus 229 ~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~-~~L~~~a~~l~l~~~v-f-------------~G~-~ 292 (462)
T PLN02846 229 KGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDS-DEVKAAAEKLELDVRV-Y-------------PGR-D 292 (462)
T ss_pred eEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccH-HHHHHHHHhcCCcEEE-E-------------CCC-C
Confidence 35666665 358899999999999887899999999999987 8999999998876332 2 221 1
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
+...+|+.+|+ ||.+|..|++ |++++||||||+|||+++..++ +.+ .+.+ .++...|.++++++|.+++++
T Consensus 293 ~~~~~~~~~Dv-Fv~pS~~Et~-g~v~lEAmA~G~PVVa~~~~~~--~~v---~~~~--ng~~~~~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 293 HADPLFHDYKV-FLNPSTTDVV-CTTTAEALAMGKIVVCANHPSN--EFF---KQFP--NCRTYDDGKGFVRATLKALAE 363 (462)
T ss_pred CHHHHHHhCCE-EEECCCcccc-hHHHHHHHHcCCcEEEecCCCc--cee---ecCC--ceEecCCHHHHHHHHHHHHcc
Confidence 33479999999 7889999996 9999999999999999765431 333 2333 345558999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHH
Q 043830 209 ARVLEAQQMAAKQAFCAL-SSGIVANVWNLLN 239 (248)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 239 (248)
+. ++++.+++ ..+ |+.+++++++.|+
T Consensus 364 ~~--~~~~~~a~---~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 364 EP--APLTDAQR---HELSWEAATERFLRVAD 390 (462)
T ss_pred Cc--hhHHHHHH---HhCCHHHHHHHHHHHhc
Confidence 42 33334433 245 8899999988876
No 64
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.83 E-value=9.3e-19 Score=153.90 Aligned_cols=214 Identities=16% Similarity=0.165 Sum_probs=148.8
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeE-EEEeCCCcc----hHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQV-WMASSIHRG----EEKVMLAVHKV 72 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v-~l~~~~~~~----~~~~ll~a~~~ 72 (248)
|+.+++.+.+.|++ +.++||+..+..... .....++..++ ++++ +++++.+.. ..+.+++|+..
T Consensus 142 ~~~~~~~~~~~g~~---~~~~G~p~~~~~~~~-----~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~ 213 (380)
T PRK00025 142 FPFEAAFYDKLGVP---VTFVGHPLADAIPLL-----PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQL 213 (380)
T ss_pred CccCHHHHHhcCCC---eEEECcCHHHhcccc-----cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 34567777777875 888999865542211 11345566664 4554 455554422 24678899998
Q ss_pred HHHhCCCeEEEEecCCCCCHHHHHHHHHhc-CCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCC
Q 043830 73 LMQKNPNLVTIIVPRHPQHGKEIAQKLQKE-GEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLA 151 (248)
Q Consensus 73 l~~~~~~~~lvivG~~~~~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~g 151 (248)
+.++.|+++++++|++++..+++++.+.+. ++. +.+.+ +++..+|+.||++++ + +
T Consensus 214 l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~--~~~~~~~~~aDl~v~-~------s 269 (380)
T PRK00025 214 LQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---------------VTLLD--GQKREAMAAADAALA-A------S 269 (380)
T ss_pred HHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---------------eEEEc--ccHHHHHHhCCEEEE-C------c
Confidence 887788999999987555546777777665 543 22332 378999999999765 2 2
Q ss_pred CCCHHHHHhhCCcEEECCCCCChHH-HHHHHHhcC--------------CceEEEcCCHHHHHHHHHHhhhCHHHHHHHH
Q 043830 152 GHNISEAAAAGCAVLTGPHIGHYSN-MVSAMQRLN--------------PKSVLQVSGKSELEEALSQLFSDARVLEAQQ 216 (248)
Q Consensus 152 g~~~lEA~a~G~Pvi~~~~~~~~~~-~~~~~~~~g--------------~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 216 (248)
|.+++|||++|+|+|+++..+.++. +.++...++ .++.....|++.|++.+.++++|++.+++|+
T Consensus 270 G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 349 (380)
T PRK00025 270 GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALL 349 (380)
T ss_pred cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 6778899999999999877766664 333322211 0122234689999999999999999999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhhh
Q 043830 217 MAAKQAFCALSSGIVANVWNLLNFHVFRRA 246 (248)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (248)
+++.+.......++++++++.+.+++.+|.
T Consensus 350 ~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~ 379 (380)
T PRK00025 350 EGFTELHQQLRCGADERAAQAVLELLKQRK 379 (380)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhhcC
Confidence 998665544346799999999999888774
No 65
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.83 E-value=4.5e-19 Score=153.87 Aligned_cols=202 Identities=14% Similarity=0.118 Sum_probs=138.8
Q ss_pred CHHHHHHH-HHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC--CCeEEEEeCCC--cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRF-QLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--HRQVWMASSIH--RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l-~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~--~~~v~l~~~~~--~~~~~~ll~a~~~l~~ 75 (248)
|+.+++.+ ...|.+. .+++|+ +|....+ + ....+..++ +...+++.|+. .|+.+.+++|+.++..
T Consensus 151 s~~~~~~~~~~~~~~~---~~i~ng-v~~~~~~----~--~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~ 220 (363)
T cd04955 151 SPGIKEYLKEKYGRDS---TYIPYG-ADHVVSS----E--EDEILKKYGLEPGRYYLLVGRIVPENNIDDLIEAFSKSNS 220 (363)
T ss_pred CHHHHHHHHHhcCCCC---eeeCCC-cChhhcc----h--hhhhHHhcCCCCCcEEEEEecccccCCHHHHHHHHHhhcc
Confidence 56777777 4466653 778875 3443211 0 112233332 33344444432 4788899999987643
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHH-hcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccC-CCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQ-KEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFL-PGLA 151 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~-e~~g 151 (248)
+++|+|+|+++.. ..+.+.+. .+++.. +|.+.|.. .++..+|+.||+++ .+|.. |++
T Consensus 221 ---~~~l~ivG~~~~~-~~~~~~~~~~~~~~~-------------~V~~~g~~~~~~~~~~~~~ad~~v-~ps~~~e~~- 281 (363)
T cd04955 221 ---GKKLVIVGNADHN-TPYGKLLKEKAAADP-------------RIIFVGPIYDQELLELLRYAALFY-LHGHSVGGT- 281 (363)
T ss_pred ---CceEEEEcCCCCc-chHHHHHHHHhCCCC-------------cEEEccccChHHHHHHHHhCCEEE-eCCccCCCC-
Confidence 7899999998655 45555554 444432 45555533 57899999999965 56666 886
Q ss_pred CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH-h-chh
Q 043830 152 GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA-L-SSG 229 (248)
Q Consensus 152 g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~-~-~~~ 229 (248)
|.+++|||+||+|||+++.+ +..+..+ + .|..+.+.|. ++++|.++++|++.+.+|++++++.+.+ + |+.
T Consensus 282 ~~~~~EAma~G~PvI~s~~~-~~~e~~~---~--~g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~ 353 (363)
T cd04955 282 NPSLLEAMAYGCPVLASDNP-FNREVLG---D--KAIYFKVGDD--LASLLEELEADPEEVSAMAKAARERIREKYTWEK 353 (363)
T ss_pred ChHHHHHHHcCCCEEEecCC-ccceeec---C--CeeEecCchH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 89999999999999997654 4444432 2 3466665554 9999999999999999999999998875 4 788
Q ss_pred HHHHHHHHHH
Q 043830 230 IVANVWNLLN 239 (248)
Q Consensus 230 ~~~~~l~~~~ 239 (248)
++++++++|+
T Consensus 354 ~~~~~~~~y~ 363 (363)
T cd04955 354 IADQYEELYK 363 (363)
T ss_pred HHHHHHHHhC
Confidence 8899888773
No 66
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.82 E-value=1.6e-18 Score=155.41 Aligned_cols=207 Identities=12% Similarity=0.120 Sum_probs=137.5
Q ss_pred CCCeEEcCCccccccc-CCCCCCc---ccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCC----eEEEE
Q 043830 15 PFTINFSGDLKYVHEY-DESEGDI---GSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPN----LVTII 84 (248)
Q Consensus 15 ~~kI~v~gn~~~d~~~-~~~~~~~---~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~----~~lvi 84 (248)
..+|.+++|+ +|... .+....+ .....+|+++++++++++.++. .|++..+++|++.+.+++|+ +.|++
T Consensus 221 ~~~v~viP~G-ID~~~f~~~~~~~~~~~~~~~lr~~~~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~ 299 (456)
T TIGR02400 221 TVRVGAFPIG-IDVDRFAEQAKKPSVQKRIAELRESLKGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQ 299 (456)
T ss_pred EEEEEEecCc-CCHHHHHHHhcChhHHHHHHHHHHHcCCCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEE
Confidence 3456677764 55542 1111111 1233577777788888876653 48899999999999888886 45676
Q ss_pred ec-----CCCCCHHHHHHHHHhc-C-CceEEecccCCCCCCccE-EEEc--ChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 85 VP-----RHPQHGKEIAQKLQKE-G-EVVALRSRHEKLMPRTNV-YVVD--TLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 85 vG-----~~~~~~~~l~~~~~~~-~-l~~~~~~~~~~~~~~~~v-~~~~--~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
+| +++++ .++++.++++ + +.. .+.. . ....| ++.+ +..++..+|+.||++ +.+|..||| |++
T Consensus 300 v~~p~rg~~~~~-~~l~~~i~~lv~~in~-~~~~--~--~~~pv~~l~~~~~~~el~aly~aaDv~-vv~S~~EG~-~Lv 371 (456)
T TIGR02400 300 IAVPSRGDVPEY-QQLRRQVEELVGRING-RFGT--L--DWTPIRYLNRSYDREELMALYRAADVG-LVTPLRDGM-NLV 371 (456)
T ss_pred EecCCccCchHH-HHHHHHHHHHHHHHHh-ccCC--C--CCccEEEEcCCCCHHHHHHHHHhCcEE-EECcccccc-Ccc
Confidence 64 33433 5666666554 0 000 0000 0 00123 3443 357999999999995 557888997 999
Q ss_pred HHHHHhhCCc----EEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHh-ch
Q 043830 155 ISEAAAAGCA----VLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCAL-SS 228 (248)
Q Consensus 155 ~lEA~a~G~P----vi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~ 228 (248)
++||||||+| +|+|..+|.. + .+ . +|+++.+.|+++++++|.++|+ +++.++++.++.++++.++ ..
T Consensus 372 ~lEamA~g~P~~g~vVlS~~~G~~-~---~l-~--~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~ 444 (456)
T TIGR02400 372 AKEYVAAQDPKDGVLILSEFAGAA-Q---EL-N--GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQ 444 (456)
T ss_pred HHHHHHhcCCCCceEEEeCCCCCh-H---Hh-C--CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHH
Confidence 9999999999 8888665433 2 22 2 3488899999999999999998 6788888899899988775 34
Q ss_pred hHHHHHHHH
Q 043830 229 GIVANVWNL 237 (248)
Q Consensus 229 ~~~~~~l~~ 237 (248)
.-++++++.
T Consensus 445 ~W~~~~l~~ 453 (456)
T TIGR02400 445 RWREDFLSD 453 (456)
T ss_pred HHHHHHHHH
Confidence 445555543
No 67
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.82 E-value=4.4e-19 Score=160.46 Aligned_cols=203 Identities=11% Similarity=0.031 Sum_probs=139.3
Q ss_pred CCCCCeEEcCCccccccc-CCCCCCc---------------ccHHHHHHhcC-----CCeEEEEeCCC--cchHHHHHHH
Q 043830 13 ASPFTINFSGDLKYVHEY-DESEGDI---------------GSIEDLKASLA-----HRQVWMASSIH--RGEEKVMLAV 69 (248)
Q Consensus 13 v~~~kI~v~gn~~~d~~~-~~~~~~~---------------~~~~~~r~~~~-----~~~v~l~~~~~--~~~~~~ll~a 69 (248)
.+.+|+.+++|+ .|... .|.. ++ ..+..++++++ +.+++++.|+. .|+.+.+++|
T Consensus 240 ~~~~ki~~I~NG-id~~~~~p~~-~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a 317 (476)
T cd03791 240 ARAGKLSGILNG-IDYDVWNPAT-DPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEA 317 (476)
T ss_pred hccCCeEEEeCC-CcCcccCccc-cchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHH
Confidence 356899999985 34332 2110 11 11234566553 45677766653 4788999999
Q ss_pred HHHHHHhCCCeEEEEecCCCCC-HHHHHHHHHhcCCceEEecccCCCCCCccEE-EEcC-hhHHHHHHhhCCEEEEcCcc
Q 043830 70 HKVLMQKNPNLVTIIVPRHPQH-GKEIAQKLQKEGEVVALRSRHEKLMPRTNVY-VVDT-LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 70 ~~~l~~~~~~~~lvivG~~~~~-~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~-~~~l~~~y~~ad~~~v~~s~ 146 (248)
+..+.+. +++|+|+|.++.. .+.++++++++ . .++. +.+. ...+..+|+.||++ +.||.
T Consensus 318 ~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~-~--------------~~v~~~~~~~~~~~~~~~~~aDv~-l~pS~ 379 (476)
T cd03791 318 LPELLEL--GGQLVILGSGDPEYEEALRELAARY-P--------------GRVAVLIGYDEALAHLIYAGADFF-LMPSR 379 (476)
T ss_pred HHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhC-C--------------CcEEEEEeCCHHHHHHHHHhCCEE-ECCCC
Confidence 9988764 4899999988542 24455555543 1 1222 3332 34567899999995 56888
Q ss_pred CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHH---hcCCceEEEcCCHHHHHHHHHHhhh---CHHHHHHHHHHHH
Q 043830 147 LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ---RLNPKSVLQVSGKSELEEALSQLFS---DARVLEAQQMAAK 220 (248)
Q Consensus 147 ~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~---~~g~g~~~~~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~ 220 (248)
.|++ |++.+|||+||+|||+++. ++.++.+.... ..++|+++.+.|+++|+++|.++++ +++.+++|++++.
T Consensus 380 ~E~~-gl~~lEAma~G~pvI~~~~-gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~ 457 (476)
T cd03791 380 FEPC-GLTQMYAMRYGTVPIVRAT-GGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAM 457 (476)
T ss_pred CCCC-cHHHHHHhhCCCCCEECcC-CCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 8986 8999999999999998754 46666543321 1126788888999999999999875 6788888888775
Q ss_pred HHHHHh-chhHHHHHHHHHH
Q 043830 221 QAFCAL-SSGIVANVWNLLN 239 (248)
Q Consensus 221 ~~~~~~-~~~~~~~~l~~~~ 239 (248)
+. .+ |+.++++++++|+
T Consensus 458 ~~--~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 458 AQ--DFSWDRSAKEYLELYR 475 (476)
T ss_pred cc--CCChHHHHHHHHHHHh
Confidence 43 35 8899999998886
No 68
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.81 E-value=5.1e-19 Score=156.92 Aligned_cols=197 Identities=9% Similarity=-0.005 Sum_probs=128.2
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCC--C-c-chHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSI--H-R-GEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~--~-~-~~~~~ll~a~~~l~~ 75 (248)
|+..++.+.+. ...++|.|++|+ +|... .+.+ .....+. ..+++++++.+. + + |+...+++|+..+
T Consensus 198 S~~l~~~~~~~-~~~~~i~vI~NG-id~~~~~~~~----~~~~~~~-~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l-- 268 (405)
T PRK10125 198 SQHVADAFNSL-YGPGRCRIINNG-IDMATEAILA----ELPPVRE-TQGKPKIAVVAHDLRYDGKTDQQLVREMMAL-- 268 (405)
T ss_pred CHHHHHHHHHH-cCCCCEEEeCCC-cCcccccccc----ccccccc-CCCCCEEEEEEeccccCCccHHHHHHHHHhC--
Confidence 56677776543 335789999986 45421 1000 0001111 124455554432 2 2 5678899998765
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
.++++|+|+|.++.... .. +.+.| +.+...++..+|+.||+ ||.||..|+| |+++
T Consensus 269 -~~~~~L~ivG~g~~~~~-----------~~-v~~~g----------~~~~~~~l~~~y~~aDv-fV~pS~~Egf-p~vi 323 (405)
T PRK10125 269 -GDKIELHTFGKFSPFTA-----------GN-VVNHG----------FETDKRKLMSALNQMDA-LVFSSRVDNY-PLIL 323 (405)
T ss_pred -CCCeEEEEEcCCCcccc-----------cc-eEEec----------CcCCHHHHHHHHHhCCE-EEECCccccC-cCHH
Confidence 35799999998754310 00 11111 22334589999999999 5678999996 9999
Q ss_pred HHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHH-H---HHHHHHHHHH-h-chh
Q 043830 156 SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEA-Q---QMAAKQAFCA-L-SSG 229 (248)
Q Consensus 156 lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~-~---~~~~~~~~~~-~-~~~ 229 (248)
+||||||+|||+++. ++.+|+++ .++|++++++|+++|++.+ ++..+++ + .+++++.+.+ + ++.
T Consensus 324 lEAmA~G~PVVat~~-gG~~Eiv~----~~~G~lv~~~d~~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~ 393 (405)
T PRK10125 324 CEALSIGVPVIATHS-DAAREVLQ----KSGGKTVSEEEVLQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQ 393 (405)
T ss_pred HHHHHcCCCEEEeCC-CChHHhEe----CCcEEEECCCCHHHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHH
Confidence 999999999999865 46776553 3457999999999999753 4444443 2 3456666644 5 689
Q ss_pred HHHHHHHHHHHH
Q 043830 230 IVANVWNLLNFH 241 (248)
Q Consensus 230 ~~~~~l~~~~~~ 241 (248)
++++++++|+++
T Consensus 394 ~~~~y~~lY~~l 405 (405)
T PRK10125 394 MLEEYVNFYQNL 405 (405)
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
No 69
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.81 E-value=3.4e-19 Score=162.14 Aligned_cols=149 Identities=8% Similarity=0.036 Sum_probs=113.4
Q ss_pred CcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCC
Q 043830 59 HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTP 138 (248)
Q Consensus 59 ~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad 138 (248)
..|+++.||+|+..+.+..|+++|+|+|+||.+ +++++++.++++. |.|.+...+...+|+.+|
T Consensus 557 ~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~r-eeLe~la~eLgL~---------------V~FLG~~dd~~~lyasaD 620 (794)
T PLN02501 557 WAKGYRELIDLLAKHKNELDGFNLDVFGNGEDA-HEVQRAAKRLDLN---------------LNFLKGRDHADDSLHGYK 620 (794)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccH-HHHHHHHHHcCCE---------------EEecCCCCCHHHHHHhCC
Confidence 358899999999998877889999999999987 7899999888763 234454456778999999
Q ss_pred EEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 043830 139 IAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMA 218 (248)
Q Consensus 139 ~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 218 (248)
+ ||.||..|+| |++++||||||+|||+++.+++ +. +.+.+ .++..+|.++++++|.++++|+..+..+.+
T Consensus 621 V-FVlPS~sEgF-GlVlLEAMA~GlPVVATd~pG~--e~---V~~g~--nGll~~D~EafAeAI~~LLsd~~~rl~~~a- 690 (794)
T PLN02501 621 V-FINPSISDVL-CTATAEALAMGKFVVCADHPSN--EF---FRSFP--NCLTYKTSEDFVAKVKEALANEPQPLTPEQ- 690 (794)
T ss_pred E-EEECCCcccc-hHHHHHHHHcCCCEEEecCCCC--ce---EeecC--CeEecCCHHHHHHHHHHHHhCchhhhHHHH-
Confidence 9 6789999996 9999999999999999866532 21 22222 234569999999999999998876654443
Q ss_pred HHHHHHHh-chhHHHHHHHH
Q 043830 219 AKQAFCAL-SSGIVANVWNL 237 (248)
Q Consensus 219 ~~~~~~~~-~~~~~~~~l~~ 237 (248)
...+ |+.+++++++.
T Consensus 691 ----~~~~SWeAaadrLle~ 706 (794)
T PLN02501 691 ----RYNLSWEAATQRFMEY 706 (794)
T ss_pred ----HhhCCHHHHHHHHHHh
Confidence 1133 66666666543
No 70
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.80 E-value=7.8e-19 Score=158.05 Aligned_cols=203 Identities=12% Similarity=0.136 Sum_probs=132.7
Q ss_pred CCeEEcCCccccccc-CCCCCCcccHH---HHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCC----eEEEEe
Q 043830 16 FTINFSGDLKYVHEY-DESEGDIGSIE---DLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPN----LVTIIV 85 (248)
Q Consensus 16 ~kI~v~gn~~~d~~~-~~~~~~~~~~~---~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~----~~lviv 85 (248)
.+|.+++|+ +|... .+....+...+ .++..+++++++++.++. .|++..+|+|+..+.+++|+ ++|+++
T Consensus 227 ~~i~vip~G-ID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~v 305 (460)
T cd03788 227 VRVGAFPIG-IDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQI 305 (460)
T ss_pred EEEEEEeCe-EcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEE
Confidence 467788864 45431 11111111112 233444577788876654 48899999999999888886 568888
Q ss_pred cCC-----CCCHHHHHHHHH----hcCCceEEecccCCCCCCccE-EEEc--ChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 86 PRH-----PQHGKEIAQKLQ----KEGEVVALRSRHEKLMPRTNV-YVVD--TLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 86 G~~-----~~~~~~l~~~~~----~~~l~~~~~~~~~~~~~~~~v-~~~~--~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
|.+ +++ .++++.++ +.+.... .. ....| ++.+ +..++..+|+.||++ +.+|..||| |+
T Consensus 306 g~~~~g~~~~~-~~l~~~l~~~v~~in~~~g--~~-----~~~~v~~~~g~v~~~el~~~y~~aDv~-v~pS~~Eg~-~l 375 (460)
T cd03788 306 AVPSRTDVPEY-QELRREVEELVGRINGKFG--TL-----DWTPVRYLYRSLPREELAALYRAADVA-LVTPLRDGM-NL 375 (460)
T ss_pred ccCCCcCcHHH-HHHHHHHHHHHHHHHhccC--CC-----CceeEEEEeCCCCHHHHHHHHHhccEE-EeCcccccc-Cc
Confidence 642 222 33444333 3222100 00 01123 4444 467999999999994 668889997 99
Q ss_pred CHHHHHhhCCc----EEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC-HHHHHHHHHHHHHHHHHh-c
Q 043830 154 NISEAAAAGCA----VLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD-ARVLEAQQMAAKQAFCAL-S 227 (248)
Q Consensus 154 ~~lEA~a~G~P----vi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~-~ 227 (248)
+++||||||+| ||++..+| ..+. + .+|+++.+.|+++++++|.+++++ ++.++++++++++++.++ +
T Consensus 376 v~lEAma~g~p~~g~vV~S~~~G-~~~~---~---~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~ 448 (460)
T cd03788 376 VAKEYVACQDDDPGVLILSEFAG-AAEE---L---SGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVRTHDV 448 (460)
T ss_pred ccceeEEEecCCCceEEEecccc-chhh---c---CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999 88775543 3222 2 234788899999999999999985 478888999999998776 4
Q ss_pred hhHHHHHHH
Q 043830 228 SGIVANVWN 236 (248)
Q Consensus 228 ~~~~~~~l~ 236 (248)
..-++++++
T Consensus 449 ~~w~~~~l~ 457 (460)
T cd03788 449 QAWANSFLD 457 (460)
T ss_pred HHHHHHHHH
Confidence 555555544
No 71
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.80 E-value=6.5e-19 Score=147.53 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=137.1
Q ss_pred cCCCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhcC-CCeEEEEeCC--CcchHHHHHHHHHHHHHhCCCeEEEEec
Q 043830 11 LEASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASLA-HRQVWMASSI--HRGEEKVMLAVHKVLMQKNPNLVTIIVP 86 (248)
Q Consensus 11 ~gv~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~~-~~~v~l~~~~--~~~~~~~ll~a~~~l~~~~~~~~lvivG 86 (248)
-.++++||.++||-. +.. +.|.+.+ +.. +-..++++|+ +.|+++.+++.++.+.+++|+++|+|+|
T Consensus 164 ~~L~p~kvsvIPnAv-~~~~f~P~~~~---------~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~G 233 (426)
T KOG1111|consen 164 GALAPAKVSVIPNAV-VTHTFTPDAAD---------KPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIG 233 (426)
T ss_pred eccCHhHeeecccee-eccccccCccc---------cCCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEec
Confidence 357889999999853 322 3332111 111 2234555554 4688999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCc
Q 043830 87 RHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCA 164 (248)
Q Consensus 87 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~P 164 (248)
+||.+ ..+++...++.+.+ +|.++|. .+++.+.|...|+ |+.+|+.|.| |++++|||+||+|
T Consensus 234 DGPk~-i~lee~lEk~~l~~-------------rV~~lG~v~h~~Vr~vl~~G~I-FlntSlTEaf-c~~ivEAaScGL~ 297 (426)
T KOG1111|consen 234 DGPKR-IDLEEMLEKLFLQD-------------RVVMLGTVPHDRVRDVLVRGDI-FLNTSLTEAF-CMVIVEAASCGLP 297 (426)
T ss_pred CCccc-chHHHHHHHhhccC-------------ceEEecccchHHHHHHHhcCcE-EeccHHHHHH-HHHHHHHHhCCCE
Confidence 99987 67888888777654 4555553 3689999999999 7889999986 9999999999999
Q ss_pred EEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh----CHHHHHHHHHHHHHHHHHh--chhHHHHHHHHH
Q 043830 165 VLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS----DARVLEAQQMAAKQAFCAL--SSGIVANVWNLL 238 (248)
Q Consensus 165 vi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~ 238 (248)
||.+. .|+.+|+. ..+. ......+++++++++.+.++ .|.. ..+.+.+. |..++++|.+.|
T Consensus 298 VVsTr-VGGIpeVL----P~d~-i~~~~~~~~dl~~~v~~ai~~~~~~p~~-------~h~~v~~~y~w~dVa~rTekvy 364 (426)
T KOG1111|consen 298 VVSTR-VGGIPEVL----PEDM-ITLGEPGPDDLVGAVEKAITKLRTLPLE-------FHDRVKKMYSWKDVAERTEKVY 364 (426)
T ss_pred EEEee-cCCccccC----Cccc-eeccCCChHHHHHHHHHHHHHhccCchh-------HHHHHHHhccHHHHHHHHHHHH
Confidence 99764 55777643 2221 11223456666666665554 3332 22333333 889999999999
Q ss_pred HHHhhhh
Q 043830 239 NFHVFRR 245 (248)
Q Consensus 239 ~~~~~~~ 245 (248)
.+..+.+
T Consensus 365 ~r~~~t~ 371 (426)
T KOG1111|consen 365 DRAATTS 371 (426)
T ss_pred HHHhhcc
Confidence 9877654
No 72
>PLN02275 transferase, transferring glycosyl groups
Probab=99.80 E-value=2.6e-18 Score=150.90 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=118.6
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHH---
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLM--- 74 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~--- 74 (248)
|+.+++.+.+ .|++ +.+++|+. +..+.+.. . ...++ .+...++++.++. .|+++.+++|+..+.
T Consensus 173 S~~~~~~l~~~~g~~---i~vi~n~~-~~~f~~~~--~--~~~~~--~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~ 242 (371)
T PLN02275 173 TKAMQHELDQNWGIR---ATVLYDQP-PEFFRPAS--L--EIRLR--PNRPALVVSSTSWTPDEDFGILLEAAVMYDRRV 242 (371)
T ss_pred CHHHHHHHHHhcCCC---eEEECCCC-HHHcCcCC--c--hhccc--CCCcEEEEEeCceeccCCHHHHHHHHHHHHhhh
Confidence 6778888876 5775 88888852 11122211 0 01111 1223355554543 477889999998774
Q ss_pred --------------HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEE
Q 043830 75 --------------QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIA 140 (248)
Q Consensus 75 --------------~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~ 140 (248)
+..|+++|+|+|+|+++ ++++++++++|+++..++.+.. +.++++.+|+.||++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~-~~l~~~~~~~~l~~v~~~~~~~-----------~~~~~~~~l~~aDv~ 310 (371)
T PLN02275 243 AARLNESDSASGKQSLYPRLLFIITGKGPQK-AMYEEKISRLNLRHVAFRTMWL-----------EAEDYPLLLGSADLG 310 (371)
T ss_pred hhccccccccccccccCCCeEEEEEeCCCCH-HHHHHHHHHcCCCceEEEcCCC-----------CHHHHHHHHHhCCEE
Confidence 23589999999999987 8999999999987532222111 247999999999997
Q ss_pred EEcC-c-cCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 141 VIGG-S-FLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 141 ~v~~-s-~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
++.. | ..+++ |.+++||||||+|||+++. ++.+++++ +.++|+++ .|+++|+++|.+|+
T Consensus 311 v~~~~s~~~e~~-p~~llEAmA~G~PVVa~~~-gg~~eiv~---~g~~G~lv--~~~~~la~~i~~l~ 371 (371)
T PLN02275 311 VSLHTSSSGLDL-PMKVVDMFGCGLPVCAVSY-SCIGELVK---DGKNGLLF--SSSSELADQLLELL 371 (371)
T ss_pred EEeccccccccc-cHHHHHHHHCCCCEEEecC-CChHHHcc---CCCCeEEE--CCHHHHHHHHHHhC
Confidence 5421 2 23565 7889999999999999764 45555543 34455655 48999999998875
No 73
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.80 E-value=3.6e-18 Score=149.54 Aligned_cols=209 Identities=11% Similarity=0.072 Sum_probs=139.8
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC-CCeEEEEeC-CC---cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA-HRQVWMASS-IH---RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~-~~~v~l~~~-~~---~~~~~~ll~a~~~l~~ 75 (248)
|+..+++|.+.|++++||.++||+.+|....+.. ......++++++ +.+++++.+ +. .++++.+++|+..+.+
T Consensus 149 s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~--~~~~~~~~~~~~~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~ 226 (365)
T TIGR00236 149 TEQAKDNLLRENVKADSIFVTGNTVIDALLTNVE--IAYSSPVLSEFGEDKRYILLTLHRRENVGEPLENIFKAIREIVE 226 (365)
T ss_pred CHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHh--hccchhHHHhcCCCCCEEEEecCchhhhhhHHHHHHHHHHHHHH
Confidence 6788999999999999999999987665321100 011234555565 334444432 21 2457899999999887
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
.+|++++++++++.... ...+.+.++.. .+|+++++. .++..+|+.||++ +++| ||.
T Consensus 227 ~~~~~~~vi~~~~~~~~--~~~~~~~~~~~-------------~~v~~~~~~~~~~~~~~l~~ad~v-v~~S-----g~~ 285 (365)
T TIGR00236 227 EFEDVQIVYPVHLNPVV--REPLHKHLGDS-------------KRVHLIEPLEYLDFLNLAANSHLI-LTDS-----GGV 285 (365)
T ss_pred HCCCCEEEEECCCChHH--HHHHHHHhCCC-------------CCEEEECCCChHHHHHHHHhCCEE-EECC-----hhH
Confidence 78889888876432221 11122222221 357777754 3677889999985 4443 233
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHH
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVAN 233 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (248)
++|||+||+|||+++..++.++.. ..|.+.. ...|++++++++.++++|++.+++|+++...+. ..+++++
T Consensus 286 -~~EA~a~g~PvI~~~~~~~~~e~~----~~g~~~l-v~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g---~~~a~~r 356 (365)
T TIGR00236 286 -QEEAPSLGKPVLVLRDTTERPETV----EAGTNKL-VGTDKENITKAAKRLLTDPDEYKKMSNASNPYG---DGEASER 356 (365)
T ss_pred -HHHHHHcCCCEEECCCCCCChHHH----hcCceEE-eCCCHHHHHHHHHHHHhChHHHHHhhhcCCCCc---CchHHHH
Confidence 799999999999976655666544 2343333 357999999999999999999999987663321 3688899
Q ss_pred HHHHHHHH
Q 043830 234 VWNLLNFH 241 (248)
Q Consensus 234 ~l~~~~~~ 241 (248)
+++.+.++
T Consensus 357 i~~~l~~~ 364 (365)
T TIGR00236 357 IVEELLNH 364 (365)
T ss_pred HHHHHHhh
Confidence 98887764
No 74
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.76 E-value=7.8e-17 Score=144.99 Aligned_cols=111 Identities=6% Similarity=-0.024 Sum_probs=83.8
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcC--CceEEE-------cCCHHHHH
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLN--PKSVLQ-------VSGKSELE 199 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g--~g~~~~-------~~~~~~l~ 199 (248)
+..++|+.||+ +|.||++||| |.+++||||||+|||+++. +++.+.+......+ .|..+. ..+.++|+
T Consensus 467 ~y~E~~~g~dl-~v~PS~yE~f-G~~~lEAma~G~PvI~t~~-~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL-GVFPSYYEPW-GYTPAECTVMGIPSITTNL-SGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE-EEeccccCCC-CcHHHHHHHcCCCEEEccC-cchhhhhHHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 47889999999 6789999996 9999999999999999865 47755444333212 234554 35789999
Q ss_pred HHHHHhhhCHHHHHHHHHHHH--HHHHHh-chhHHHHHHHHHHHHhh
Q 043830 200 EALSQLFSDARVLEAQQMAAK--QAFCAL-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 200 ~~i~~ll~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~l~~~~~~~~ 243 (248)
++|.++++. ..++++.++++ +....+ |...+..+.+.|...|.
T Consensus 544 ~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 544 QYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 999999854 57777777665 566666 88999999998886654
No 75
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.76 E-value=1.9e-17 Score=157.10 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=134.1
Q ss_pred HHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeE----EEEec-----CCCCCHHHHHHHHHhcC--CceEE
Q 043830 42 DLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLV----TIIVP-----RHPQHGKEIAQKLQKEG--EVVAL 108 (248)
Q Consensus 42 ~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~----lvivG-----~~~~~~~~l~~~~~~~~--l~~~~ 108 (248)
.+++.+++++++++.++. .|++..+|+||+.+.+.+|+++ |++++ +++++ +++++.+.++. +....
T Consensus 271 ~lr~~~~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y-~~l~~~v~~l~g~In~~~ 349 (797)
T PLN03063 271 ELKRFFAGRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEY-QKLKSQVHELVGRINGRF 349 (797)
T ss_pred HHHHhcCCCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHH-HHHHHHHHHHHHHhhccc
Confidence 556667777888876653 4889999999999988889863 33332 33333 66777777663 22211
Q ss_pred ecccCCCCCCccEEEEc---ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCc----EEECCCCCChHHHHHHH
Q 043830 109 RSRHEKLMPRTNVYVVD---TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCA----VLTGPHIGHYSNMVSAM 181 (248)
Q Consensus 109 ~~~~~~~~~~~~v~~~~---~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~P----vi~~~~~~~~~~~~~~~ 181 (248)
-... ...|.+.+ +..++..+|+.||++ +.+|+.||| |++++||||||+| +|++..+ +..+ .+
T Consensus 350 g~~~-----~~pv~~l~~~v~~~el~aly~~ADvf-vvtSlrEGm-nLv~lEamA~g~p~~gvlVlSe~~-G~~~---~l 418 (797)
T PLN03063 350 GSVS-----SVPIHHLDCSVDFNYLCALYAITDVM-LVTSLRDGM-NLVSYEFVACQKAKKGVLVLSEFA-GAGQ---SL 418 (797)
T ss_pred ccCC-----CceeEEecCCCCHHHHHHHHHhCCEE-EeCcccccc-CcchhhHheeecCCCCCEEeeCCc-Cchh---hh
Confidence 0011 12343333 457999999999995 568899997 9999999999999 7777554 3333 22
Q ss_pred HhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHh
Q 043830 182 QRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHV 242 (248)
Q Consensus 182 ~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 242 (248)
..+|+++.+.|+++++++|.++|+ +++.++++.++.++++..+ +..-++++++.+.+..
T Consensus 419 --~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 419 --GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELNDII 479 (797)
T ss_pred --cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHh
Confidence 123478889999999999999999 8889999999999999887 5666777777777654
No 76
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.75 E-value=2.3e-17 Score=143.34 Aligned_cols=175 Identities=14% Similarity=0.065 Sum_probs=118.8
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCC-C-cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSI-H-RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~-~-~~~~~~ll~a~~~l~~~~ 77 (248)
|+.+++.+.+..- .+..+++|+ +|... .+.. ...+++++.|+ . .|+.+.+++|+..+
T Consensus 161 S~~~~~~~~~~~~--~~~~vi~~~-~d~~~~~~~~-------------~~~~~il~~G~~~~~K~~~~li~a~~~~---- 220 (351)
T cd03804 161 SRFVARRIKKYYG--RDATVIYPP-VDTDRFTPAE-------------EKEDYYLSVGRLVPYKRIDLAIEAFNKL---- 220 (351)
T ss_pred CHHHHHHHHHHhC--CCcEEECCC-CCHhhcCcCC-------------CCCCEEEEEEcCccccChHHHHHHHHHC----
Confidence 5677777765321 235677765 34332 1100 12234555443 3 47888999998765
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
+ ++|+|+|++++. +.+++ +.. .+|.|.|.. .++..+|+.||++ +.+|. |+| |+++
T Consensus 221 ~-~~l~ivG~g~~~-~~l~~-----~~~-------------~~V~~~g~~~~~~~~~~~~~ad~~-v~ps~-e~~-g~~~ 277 (351)
T cd03804 221 G-KRLVVIGDGPEL-DRLRA-----KAG-------------PNVTFLGRVSDEELRDLYARARAF-LFPAE-EDF-GIVP 277 (351)
T ss_pred C-CcEEEEECChhH-HHHHh-----hcC-------------CCEEEecCCCHHHHHHHHHhCCEE-EECCc-CCC-CchH
Confidence 3 789999998764 45544 222 256666643 4699999999995 55777 886 8999
Q ss_pred HHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCH-HHHHHHHHHHHHH
Q 043830 156 SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDA-RVLEAQQMAAKQA 222 (248)
Q Consensus 156 lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~ 222 (248)
+|||+||+|||+++.+ +..+.+ .+..+|+.+.++|+++|+++|..+++|+ ..+++++++++++
T Consensus 278 ~Eama~G~Pvi~~~~~-~~~e~i---~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 341 (351)
T cd03804 278 VEAMASGTPVIAYGKG-GALETV---IDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHAERF 341 (351)
T ss_pred HHHHHcCCCEEEeCCC-CCccee---eCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHHHhc
Confidence 9999999999997653 444433 3445668888899999999999999998 5666666666544
No 77
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.75 E-value=1.3e-16 Score=139.18 Aligned_cols=194 Identities=16% Similarity=0.123 Sum_probs=128.7
Q ss_pred CCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC-CCeEEEE-eCCC-cchH-HHHHHHHHHHHHhCCCeEEEEecC
Q 043830 13 ASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA-HRQVWMA-SSIH-RGEE-KVMLAVHKVLMQKNPNLVTIIVPR 87 (248)
Q Consensus 13 v~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~-~~~v~l~-~~~~-~~~~-~~ll~a~~~l~~~~~~~~lvivG~ 87 (248)
.+.+|++++||+. +... .+. .....+ .+. +.+++++ ++.. .++. +.+++|++++.+. + ..++++|+
T Consensus 151 ~~~~~i~vi~n~v-~~~~~~~~----~~~~~~--~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~ 221 (357)
T PRK00726 151 FFKPKAVVTGNPV-REEILALA----APPARL--AGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGK 221 (357)
T ss_pred cCCCCEEEECCCC-ChHhhccc----chhhhc--cCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCC
Confidence 6778999999974 3322 110 101111 112 4455544 3333 2433 3445888887543 4 55778898
Q ss_pred CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 88 HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 88 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++. +++.+... +++. |.+.+..++++++|+.||++++ . + |+.+++|||++|+|||+
T Consensus 222 g~~--~~~~~~~~-~~~~---------------v~~~g~~~~~~~~~~~~d~~i~-~----~-g~~~~~Ea~~~g~Pvv~ 277 (357)
T PRK00726 222 GDL--EEVRAAYA-AGIN---------------AEVVPFIDDMAAAYAAADLVIC-R----A-GASTVAELAAAGLPAIL 277 (357)
T ss_pred CcH--HHHHHHhh-cCCc---------------EEEeehHhhHHHHHHhCCEEEE-C----C-CHHHHHHHHHhCCCEEE
Confidence 763 55665554 5542 4566666789999999999654 2 2 35778999999999999
Q ss_pred CCCCC----ChHHHHHHHHhcCCceEEEcCC--HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 043830 168 GPHIG----HYSNMVSAMQRLNPKSVLQVSG--KSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFH 241 (248)
Q Consensus 168 ~~~~~----~~~~~~~~~~~~g~g~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (248)
++..+ ......+.+.+.|.|..+.++| +++|+++|.++++|++.+++|+++++++.. ..+.+++.+.+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 354 (357)
T PRK00726 278 VPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGK---PDAAERLADLIEEL 354 (357)
T ss_pred ecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC---cCHHHHHHHHHHHH
Confidence 76421 1222445677788888887777 999999999999999999999999988754 35566666666554
Q ss_pred h
Q 043830 242 V 242 (248)
Q Consensus 242 ~ 242 (248)
+
T Consensus 355 ~ 355 (357)
T PRK00726 355 A 355 (357)
T ss_pred h
Confidence 4
No 78
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.72 E-value=6.2e-16 Score=134.24 Aligned_cols=187 Identities=14% Similarity=0.137 Sum_probs=125.3
Q ss_pred CCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEE-eCCC-cchH-HHHHHHHHHHHHhCCCeE-EEE
Q 043830 13 ASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMA-SSIH-RGEE-KVMLAVHKVLMQKNPNLV-TII 84 (248)
Q Consensus 13 v~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~-~~~~-~~~~-~~ll~a~~~l~~~~~~~~-lvi 84 (248)
++++|+.++||+. |... .+. .. +.+++ +.+++++ ++.. .++. +.+++++..+.+ +++. +++
T Consensus 149 ~~~~~~~~i~n~v-~~~~~~~~-------~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~~~~~i 217 (350)
T cd03785 149 FPKDKAVVTGNPV-REEILALD-------RE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRLQVIHQ 217 (350)
T ss_pred CCCCcEEEECCCC-chHHhhhh-------hh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCeEEEEE
Confidence 5678999999864 3322 110 01 33332 4555544 4333 3343 455688877752 4565 456
Q ss_pred ecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCc
Q 043830 85 VPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCA 164 (248)
Q Consensus 85 vG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~P 164 (248)
+|.+ +. +++++.+.++ . .+|.+.+...++..+|+.||+++. +| |+.+++|||++|+|
T Consensus 218 ~G~g-~~-~~l~~~~~~~--~-------------~~v~~~g~~~~~~~~l~~ad~~v~-~s-----g~~t~~Eam~~G~P 274 (350)
T cd03785 218 TGKG-DL-EEVKKAYEEL--G-------------VNYEVFPFIDDMAAAYAAADLVIS-RA-----GASTVAELAALGLP 274 (350)
T ss_pred cCCc-cH-HHHHHHHhcc--C-------------CCeEEeehhhhHHHHHHhcCEEEE-CC-----CHhHHHHHHHhCCC
Confidence 7876 33 6777776553 1 256777777899999999999653 22 36788999999999
Q ss_pred EEECCCCC---ChH-HHHHHHHhcCCceEEEcC--CHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 043830 165 VLTGPHIG---HYS-NMVSAMQRLNPKSVLQVS--GKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWN 236 (248)
Q Consensus 165 vi~~~~~~---~~~-~~~~~~~~~g~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (248)
||+++..+ +.+ ...+.+.+.|.|..+.+. |+++|+++|..+++|++.+++|++++++++. ..+++++.+
T Consensus 275 vv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~i~~ 349 (350)
T cd03785 275 AILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLAR---PDAAERIAD 349 (350)
T ss_pred EEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---CCHHHHHHh
Confidence 99865432 222 234556667777777776 8999999999999999999999999988764 355566544
No 79
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.70 E-value=7.6e-16 Score=132.25 Aligned_cols=177 Identities=10% Similarity=-0.000 Sum_probs=115.6
Q ss_pred CCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCC--CcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCH
Q 043830 16 FTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSI--HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHG 92 (248)
Q Consensus 16 ~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~--~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~ 92 (248)
.++.+++|+ +|... ++. -..+.++++.|+ ..|+.+.+++++.. ++++++|+|.++..
T Consensus 150 ~~~~vi~ng-vd~~~~~~~-------------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~~- 209 (335)
T cd03802 150 PWVATVHNG-IDLDDYPFR-------------GPKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSDP- 209 (335)
T ss_pred cccEEecCC-cChhhCCCC-------------CCCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCCH-
Confidence 678899985 45432 110 012344554443 24677888988642 47899999998765
Q ss_pred HHHHHHHHhcC-CceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCcc-CCCCCCCCHHHHHhhCCcEEEC
Q 043830 93 KEIAQKLQKEG-EVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSF-LPGLAGHNISEAAAAGCAVLTG 168 (248)
Q Consensus 93 ~~l~~~~~~~~-l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~-~e~~gg~~~lEA~a~G~Pvi~~ 168 (248)
..+.....+.. +. .+|.+.|.. .++..+|+.+|+++ .+|. .|++ |.+++||||||+|||++
T Consensus 210 ~~~~~~~~~~~~~~-------------~~v~~~G~~~~~~~~~~~~~~d~~v-~ps~~~E~~-~~~~lEAma~G~PvI~~ 274 (335)
T cd03802 210 DYFYREIAPELLDG-------------PDIEYLGEVGGAEKAELLGNARALL-FPILWEEPF-GLVMIEAMACGTPVIAF 274 (335)
T ss_pred HHHHHHHHHhcccC-------------CcEEEeCCCCHHHHHHHHHhCcEEE-eCCcccCCc-chHHHHHHhcCCCEEEe
Confidence 45554444432 22 345666643 47899999999965 4554 5885 89999999999999987
Q ss_pred CCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-Hh-chhHHHHHHHHHH
Q 043830 169 PHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFC-AL-SSGIVANVWNLLN 239 (248)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~ 239 (248)
+.+ +.++.++ +..+|+++ .++++++++|..++..+. +++++++. ++ |+..+++++++|+
T Consensus 275 ~~~-~~~e~i~---~~~~g~l~--~~~~~l~~~l~~l~~~~~------~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 275 RRG-AVPEVVE---DGVTGFLV--DSVEELAAAVARADRLDR------AACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred CCC-Cchhhee---CCCcEEEe--CCHHHHHHHHHHHhccHH------HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 654 5655443 22244544 449999999999876542 34445553 34 6888888888773
No 80
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.69 E-value=4.6e-16 Score=135.82 Aligned_cols=201 Identities=12% Similarity=0.050 Sum_probs=131.4
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC--CCe-EEEEeCCC-----cchHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA--HRQ-VWMASSIH-----RGEEKVMLAVHK 71 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~--~~~-v~l~~~~~-----~~~~~~ll~a~~ 71 (248)
|+..+++|.+.|++++||.++||+..|... .+.. ......+..++ +.+ +++.+++. .|+++.+++|+.
T Consensus 149 s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~ 225 (363)
T cd03786 149 TEEARRNLLQEGEPPERIFVVGNTMIDALLRLLEL---AKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALA 225 (363)
T ss_pred CHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHh---hccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHH
Confidence 577889999999999999999998655432 1000 00011222332 333 44444432 356789999998
Q ss_pred HHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEEEcCccCCC
Q 043830 72 VLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAVIGGSFLPG 149 (248)
Q Consensus 72 ~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~v~~s~~e~ 149 (248)
.+... ++.+++.|+++.+ +.+++.+.++++. ..+|.|.+ ...++..+|+.||++ +++|
T Consensus 226 ~l~~~--~~~vi~~~~~~~~-~~l~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~ad~~-v~~S---- 285 (363)
T cd03786 226 ELAEE--DVPVVFPNHPRTR-PRIREAGLEFLGH------------HPNVLLISPLGYLYFLLLLKNADLV-LTDS---- 285 (363)
T ss_pred HHHhc--CCEEEEECCCChH-HHHHHHHHhhccC------------CCCEEEECCcCHHHHHHHHHcCcEE-EEcC----
Confidence 87543 5777666665544 6788877776541 12455554 346899999999995 4444
Q ss_pred CCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC-CHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-c
Q 043830 150 LAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS-GKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-S 227 (248)
Q Consensus 150 ~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~ 227 (248)
|| .+.|||++|+|||+.+..+..+ ...++| ..+.+. |+++++++|.++++++..++.|. . ..+ .
T Consensus 286 -gg-i~~Ea~~~g~PvI~~~~~~~~~----~~~~~g--~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~--~----~~~~~ 351 (363)
T cd03786 286 -GG-IQEEASFLGVPVLNLRDRTERP----ETVESG--TNVLVGTDPEAILAAIEKLLSDEFAYSLMS--I----NPYGD 351 (363)
T ss_pred -cc-HHhhhhhcCCCEEeeCCCCccc----hhhhee--eEEecCCCHHHHHHHHHHHhcCchhhhcCC--C----CCCCC
Confidence 23 3689999999999865433232 233444 556654 79999999999999998887775 1 122 3
Q ss_pred hhHHHHHHHHH
Q 043830 228 SGIVANVWNLL 238 (248)
Q Consensus 228 ~~~~~~~l~~~ 238 (248)
+.+++++++.+
T Consensus 352 ~~a~~~I~~~l 362 (363)
T cd03786 352 GNASERIVEIL 362 (363)
T ss_pred CHHHHHHHHHh
Confidence 57888887765
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.68 E-value=1.6e-15 Score=143.60 Aligned_cols=188 Identities=12% Similarity=0.116 Sum_probs=129.4
Q ss_pred HHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCC----eEEEEecC----CCCCHHHHHHHHHhc----CCce
Q 043830 41 EDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPN----LVTIIVPR----HPQHGKEIAQKLQKE----GEVV 106 (248)
Q Consensus 41 ~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~----~~lvivG~----~~~~~~~l~~~~~~~----~l~~ 106 (248)
..+|..+++++++++.++. .|++..+++|+..+.+.+|+ ++|+++|. +.+..+++++.+.++ +-..
T Consensus 256 ~~lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~ 335 (726)
T PRK14501 256 RRLRQDLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEF 335 (726)
T ss_pred HHHHHHcCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhc
Confidence 3466666777888876654 48899999999999888886 57888862 211124555554432 1110
Q ss_pred EEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCc----EEECCCCCChHHHHHH
Q 043830 107 ALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCA----VLTGPHIGHYSNMVSA 180 (248)
Q Consensus 107 ~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~P----vi~~~~~~~~~~~~~~ 180 (248)
.. .. -...+++.+ +..++..+|+.||++ +.+|+.||| |++++||||||+| +|++...|..++
T Consensus 336 ---~~--~~-~~pv~~~~~~~~~~~l~~ly~~aDv~-v~~S~~EG~-~lv~~Eama~~~~~~g~~vls~~~G~~~~---- 403 (726)
T PRK14501 336 ---GT--VD-WTPIHYFYRSLPFEELVALYRAADVA-LVTPLRDGM-NLVAKEYVASRTDGDGVLILSEMAGAAAE---- 403 (726)
T ss_pred ---CC--CC-cceEEEEeCCCCHHHHHHHHHhccEE-Eeccccccc-CcccceEEEEcCCCCceEEEecccchhHH----
Confidence 00 00 001234554 457999999999995 568899997 9999999999663 333444444332
Q ss_pred HHhcCCceEEEcCCHHHHHHHHHHhhhCH-HHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhh
Q 043830 181 MQRLNPKSVLQVSGKSELEEALSQLFSDA-RVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 181 ~~~~g~g~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 243 (248)
+. . |+++.+.|+++++++|.++|+++ +.++++.+++++++.++ +...++++++.|.+..+
T Consensus 404 l~-~--~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 404 LA-E--ALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELREAAE 465 (726)
T ss_pred hC-c--CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 32 2 47889999999999999999854 55666667788888877 78888999998887643
No 82
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.68 E-value=3.2e-15 Score=129.68 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=107.3
Q ss_pred CCeEEEEeC-CC-cchH-HHHHHHHHHHHHhCCCeEEEE-ecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEE
Q 043830 49 HRQVWMASS-IH-RGEE-KVMLAVHKVLMQKNPNLVTII-VPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVV 124 (248)
Q Consensus 49 ~~~v~l~~~-~~-~~~~-~~ll~a~~~l~~~~~~~~lvi-vG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ 124 (248)
+.+++++.+ .. .+.. ..+++|+..+... ++++++ +|++ +. +++++.+.++++...+ .+.
T Consensus 178 ~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~~~~g~~-~~-~~l~~~~~~~~l~~~v-------------~~~ 240 (348)
T TIGR01133 178 GKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIVHQTGKN-DL-EKVKNVYQELGIEAIV-------------TFI 240 (348)
T ss_pred CCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEEEECCcc-hH-HHHHHHHhhCCceEEe-------------cCc
Confidence 455555443 22 3343 3456888777543 455544 4543 33 6788888877765322 222
Q ss_pred cChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCCh---HHHHHHHHhcCCceEEEcCC--HHHHH
Q 043830 125 DTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHY---SNMVSAMQRLNPKSVLQVSG--KSELE 199 (248)
Q Consensus 125 ~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~---~~~~~~~~~~g~g~~~~~~~--~~~l~ 199 (248)
. .+++.+|+.||+++. . + |+.+++|||++|+|||+++..+.. ....+.+.+.++|..+.++| +++|+
T Consensus 241 ~--~~~~~~l~~ad~~v~-~----~-g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~ 312 (348)
T TIGR01133 241 D--ENMAAAYAAADLVIS-R----A-GASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLL 312 (348)
T ss_pred c--cCHHHHHHhCCEEEE-C----C-ChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHH
Confidence 1 278999999999654 2 2 467889999999999987543211 12334566667777777765 99999
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 043830 200 EALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWN 236 (248)
Q Consensus 200 ~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (248)
++|.++++|++.+++|++++++++.. ...+++.+
T Consensus 313 ~~i~~ll~~~~~~~~~~~~~~~~~~~---~~~~~i~~ 346 (348)
T TIGR01133 313 EALLKLLLDPANLEAMAEAARKLAKP---DAAKRIAE 346 (348)
T ss_pred HHHHHHHcCHHHHHHHHHHHHhcCCc---cHHHHHHh
Confidence 99999999999999999999887643 55555554
No 83
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.65 E-value=1.2e-15 Score=134.79 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=126.6
Q ss_pred cchHHHHHHHHHHHHHhC-----CCeEEEEecCC------CC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc
Q 043830 60 RGEEKVMLAVHKVLMQKN-----PNLVTIIVPRH------PQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD 125 (248)
Q Consensus 60 ~~~~~~ll~a~~~l~~~~-----~~~~lvivG~~------~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~ 125 (248)
.++...+++++.++.+.. ++.+++++|+. .+ ...++.+++.++++. +..|+|+.
T Consensus 285 gkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~------------g~~v~~~~ 352 (495)
T KOG0853|consen 285 GKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLL------------GQFVWFLP 352 (495)
T ss_pred CCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCcc------------CceEEEec
Confidence 367788999999988777 45678888821 11 236778888998884 13456654
Q ss_pred Chh--HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHH---HHHH
Q 043830 126 TLG--ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKS---ELEE 200 (248)
Q Consensus 126 ~~~--~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~---~l~~ 200 (248)
... +...+++.+..+++.|.. |.| |++++|||+||+|||+++++|.. |++. +.-+|+.+.+ +.+ .+++
T Consensus 353 s~~~~~~yrl~adt~~v~~qPa~-E~F-Giv~IEAMa~glPvvAt~~GGP~-EiV~---~~~tG~l~dp-~~e~~~~~a~ 425 (495)
T KOG0853|consen 353 STTRVAKYRLAADTKGVLYQPAN-EHF-GIVPIEAMACGLPVVATNNGGPA-EIVV---HGVTGLLIDP-GQEAVAELAD 425 (495)
T ss_pred CCchHHHHHHHHhcceEEecCCC-CCc-cceeHHHHhcCCCEEEecCCCce-EEEE---cCCcceeeCC-chHHHHHHHH
Confidence 333 334556666677777888 776 99999999999999998876443 5443 3445688877 666 6999
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHhhhh
Q 043830 201 ALSQLFSDARVLEAQQMAAKQAFCA-L-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 201 ~i~~ll~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~ 245 (248)
++.++..||+++.+|+++|++++.+ | |....+|+.+.+.+++.++
T Consensus 426 ~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~~~~ 472 (495)
T KOG0853|consen 426 ALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYLQWE 472 (495)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcCCcc
Confidence 9999999999999999999999988 5 8889999999888777664
No 84
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.62 E-value=3e-14 Score=125.22 Aligned_cols=200 Identities=13% Similarity=0.017 Sum_probs=116.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhc-CCCeEEEEeCCC--cchHHHHHHHHHHHHHh
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASL-AHRQVWMASSIH--RGEEKVMLAVHKVLMQK 76 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~-~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~ 76 (248)
|+..++.+...| +++.+++|+ +|... .+....+.. .+... .+++++++.|+. +++.+ ++.+ +.+.
T Consensus 161 S~~l~~~~~~~~---~~i~~i~ng-vd~~~f~~~~~~~~~---~~~~~~~~~~~i~y~G~l~~~~d~~-ll~~---la~~ 229 (373)
T cd04950 161 SPSLYEAKRRLN---PNVVLVPNG-VDYEHFAAARDPPPP---PADLAALPRPVIGYYGAIAEWLDLE-LLEA---LAKA 229 (373)
T ss_pred CHHHHHHHhhCC---CCEEEcccc-cCHHHhhcccccCCC---hhHHhcCCCCEEEEEeccccccCHH-HHHH---HHHH
Confidence 566777777776 679999985 45432 111110000 11111 245666665543 34444 3333 3345
Q ss_pred CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccC----CCC
Q 043830 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFL----PGL 150 (248)
Q Consensus 77 ~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~----e~~ 150 (248)
.|+++|+|+|.++.. .+...+ ... .+|.+.|. .++++.+|+.+|++++ |+.. .+.
T Consensus 230 ~p~~~~vliG~~~~~-~~~~~~---~~~--------------~nV~~~G~~~~~~l~~~l~~~Dv~l~-P~~~~~~~~~~ 290 (373)
T cd04950 230 RPDWSFVLIGPVDVS-IDPSAL---LRL--------------PNVHYLGPKPYKELPAYLAGFDVAIL-PFRLNELTRAT 290 (373)
T ss_pred CCCCEEEEECCCcCc-cChhHh---ccC--------------CCEEEeCCCCHHHHHHHHHhCCEEec-CCccchhhhcC
Confidence 789999999987322 111111 111 35677774 3799999999999765 4432 111
Q ss_pred CCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chh
Q 043830 151 AGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSG 229 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~ 229 (248)
.++.++|+||||+|||+++ +++..+.. + |..+..+|+++++++|.+++.++...... ..++.+.++ |+.
T Consensus 291 ~P~Kl~EylA~G~PVVat~----~~~~~~~~---~-~~~~~~~d~~~~~~ai~~~l~~~~~~~~~--~~~~~~~~~sW~~ 360 (373)
T cd04950 291 SPLKLFEYLAAGKPVVATP----LPEVRRYE---D-EVVLIADDPEEFVAAIEKALLEDGPARER--RRLRLAAQNSWDA 360 (373)
T ss_pred CcchHHHHhccCCCEEecC----cHHHHhhc---C-cEEEeCCCHHHHHHHHHHHHhcCCchHHH--HHHHHHHHCCHHH
Confidence 2677999999999999864 33444322 2 24556689999999999976543222211 112245555 777
Q ss_pred HHHHHHHHHHH
Q 043830 230 IVANVWNLLNF 240 (248)
Q Consensus 230 ~~~~~l~~~~~ 240 (248)
.++++++.+.+
T Consensus 361 ~a~~~~~~l~~ 371 (373)
T cd04950 361 RAAEMLEALQE 371 (373)
T ss_pred HHHHHHHHHHh
Confidence 77777755543
No 85
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=2.5e-12 Score=108.83 Aligned_cols=174 Identities=21% Similarity=0.227 Sum_probs=123.7
Q ss_pred eEEEEeCC-Cc-chHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-
Q 043830 51 QVWMASSI-HR-GEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL- 127 (248)
Q Consensus 51 ~v~l~~~~-~~-~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~- 127 (248)
.++++.|+ .+ ++.+.+++++..+....+++.++++|.++.....+...+.+.+... .+.+.+..
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~v~~~g~~~ 266 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLED-------------NVKFLGYVP 266 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCC-------------cEEEecccC
Confidence 35555443 33 7788999999999877777899999988763245555666665432 33444443
Q ss_pred -hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 128 -GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 128 -~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
.++..+|+.||++ +.||..|++ |.+++|||++|+|||+++.. ...+.+ .+.+.|..+...|.+++++++..++
T Consensus 267 ~~~~~~~~~~~~~~-v~ps~~e~~-~~~~~Ea~a~g~pvi~~~~~-~~~e~~---~~~~~g~~~~~~~~~~~~~~i~~~~ 340 (381)
T COG0438 267 DEELAELLASADVF-VLPSLSEGF-GLVLLEAMAAGTPVIASDVG-GIPEVV---EDGETGLLVPPGDVEELADALEQLL 340 (381)
T ss_pred HHHHHHHHHhCCEE-Eeccccccc-hHHHHHHHhcCCcEEECCCC-ChHHHh---cCCCceEecCCCCHHHHHHHHHHHh
Confidence 3788899999995 567766876 88899999999999987654 444433 2221246444457999999999999
Q ss_pred hCHHHHHHHHHHHHHHHH-Hh-chhHHHHHHHHHHHHhh
Q 043830 207 SDARVLEAQQMAAKQAFC-AL-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~ 243 (248)
++++.++.+++.+++.+. .+ |+....++.+.+.....
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 341 EDPELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 999888888875555554 44 77777888887777654
No 86
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.51 E-value=5.6e-14 Score=105.51 Aligned_cols=129 Identities=21% Similarity=0.287 Sum_probs=81.4
Q ss_pred EEEEeCCC--cchHHHHHH-HHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 52 VWMASSIH--RGEEKVMLA-VHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 52 v~l~~~~~--~~~~~~ll~-a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
++++.+.. .++++.+++ ++.++.++.|+++|.|+|.+++ +++++ .. .+|.+.+...
T Consensus 4 ~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~---~l~~~-~~-----------------~~v~~~g~~~ 62 (135)
T PF13692_consen 4 YIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD---ELKRL-RR-----------------PNVRFHGFVE 62 (135)
T ss_dssp EEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS----HHCCH-HH-----------------CTEEEE-S-H
T ss_pred cccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH---HHHHh-cC-----------------CCEEEcCCHH
Confidence 34444433 367889999 9999999999999999999765 23333 11 2456666667
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
++.++|+.||+++.+.+..+++ +..++|+|++|+|||+++. +..+..+. .+.|..+ .+|+++++++|.++++|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~-~~k~~e~~~~G~pvi~~~~--~~~~~~~~---~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGF-PNKLLEAMAAGKPVIASDN--GAEGIVEE---DGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC--HHHHHHHCTT--EEEEHH--HCHCHS------SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCEEEEEeeCCCcC-cHHHHHHHHhCCCEEECCc--chhhheee---cCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 9999999999976543334543 6779999999999999653 12222221 2333444 79999999999999875
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.51 E-value=3e-12 Score=114.96 Aligned_cols=172 Identities=11% Similarity=0.093 Sum_probs=118.6
Q ss_pred HHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCC----eEEEEecCCC----CCHHHH----HHHHHhcCCc
Q 043830 40 IEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPN----LVTIIVPRHP----QHGKEI----AQKLQKEGEV 105 (248)
Q Consensus 40 ~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~----~~lvivG~~~----~~~~~l----~~~~~~~~l~ 105 (248)
.+.+|++++++++++..++. .|++...++||..+.+++|+ ++|+++|... ....++ ++.+.+.+=.
T Consensus 275 ~~~lr~~~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~ 354 (487)
T TIGR02398 275 MERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGR 354 (487)
T ss_pred HHHHHHHcCCceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhc
Confidence 45688888888888887654 48899999999999889997 5788887532 111333 3433332111
Q ss_pred eEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCC----cEEECCCCCChHHHHH
Q 043830 106 VALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGC----AVLTGPHIGHYSNMVS 179 (248)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~----Pvi~~~~~~~~~~~~~ 179 (248)
. -..+.. .-+++.+. ..++..+|+.||++++ +|+.+|+ +++..|++||+. |+|.|.-.| ...
T Consensus 355 f--g~~~~~----pv~~~~~~v~~~el~alYr~ADV~lv-T~lrDGm-NLVa~Eyva~~~~~~GvLILSefaG----aa~ 422 (487)
T TIGR02398 355 F--ARIGWT----PLQFFTRSLPYEEVSAWFAMADVMWI-TPLRDGL-NLVAKEYVAAQGLLDGVLVLSEFAG----AAV 422 (487)
T ss_pred c--CCCCCc----cEEEEcCCCCHHHHHHHHHhCCEEEE-Ccccccc-CcchhhHHhhhcCCCCCEEEecccc----chh
Confidence 0 001111 13456664 5799999999999766 6788887 888999999998 899875543 234
Q ss_pred HHHhcCCceEEEcCCHHHHHHHHHHhhhCH-HHHHHHHHHHHHHHHHh
Q 043830 180 AMQRLNPKSVLQVSGKSELEEALSQLFSDA-RVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 180 ~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~~~~ 226 (248)
.+ .. ++.+.|.|+++++++|.+.|+.| +.|++..++-++++..+
T Consensus 423 ~l-~~--AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~ 467 (487)
T TIGR02398 423 EL-KG--ALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY 467 (487)
T ss_pred hc-CC--CEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC
Confidence 44 22 37888999999999999999964 45555555556666554
No 88
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.50 E-value=4.5e-12 Score=111.90 Aligned_cols=209 Identities=13% Similarity=0.109 Sum_probs=128.4
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeEEE-E-eCCCc---chHHHHHHHHHHH
Q 043830 2 TLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQVWM-A-SSIHR---GEEKVMLAVHKVL 73 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v~l-~-~~~~~---~~~~~ll~a~~~l 73 (248)
+.+++.+.+.|++ +.++|||..|...... ......|++++ ++++++ . ||+.. +....+++|++.+
T Consensus 147 ~~e~~~~~~~g~~---~~~vGnPv~~~~~~~~----~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l 219 (385)
T TIGR00215 147 PFEKAFYQKKNVP---CRFVGHPLLDAIPLYK----PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLL 219 (385)
T ss_pred CCcHHHHHhcCCC---EEEECCchhhhccccC----CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHH
Confidence 3455666666654 6789998644322100 11234555554 456554 3 34422 3456788998998
Q ss_pred HHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 74 MQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 74 ~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
.+..|++++++++.+....+.+++....++.. .+|.+.. +++..+|+.||++++ +| |.
T Consensus 220 ~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~~--~~~~~~l~aADl~V~-~S------Gt 277 (385)
T TIGR00215 220 EQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPD-------------LQLHLID--GDARKAMFAADAALL-AS------GT 277 (385)
T ss_pred HHhCCCeEEEEEeCCchhHHHHHHHHHHhCCC-------------CcEEEEC--chHHHHHHhCCEEee-cC------CH
Confidence 88889998877554333225566655555432 1233332 267889999999654 33 45
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHH-HHHHh----------cCCceEEE----cCCHHHHHHHHHHhhhCH----HHHHH
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMV-SAMQR----------LNPKSVLQ----VSGKSELEEALSQLFSDA----RVLEA 214 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~-~~~~~----------~g~g~~~~----~~~~~~l~~~i~~ll~~~----~~~~~ 214 (248)
+++|+|++|+|+|+.+.++-++..+ +.+.. .+.+.+.. --+++.|++.+.++++|+ +.+++
T Consensus 278 ~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~ 357 (385)
T TIGR00215 278 AALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHR 357 (385)
T ss_pred HHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHH
Confidence 6679999999999976654454322 22111 11112211 137899999999999999 99999
Q ss_pred HHHHHHHHHHHh-chhHHHHHHHHHH
Q 043830 215 QQMAAKQAFCAL-SSGIVANVWNLLN 239 (248)
Q Consensus 215 ~~~~~~~~~~~~-~~~~~~~~l~~~~ 239 (248)
|.+.-.+..... ..+++++..+.+.
T Consensus 358 ~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 358 ERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 888877765554 4577777777554
No 89
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.44 E-value=6.8e-12 Score=119.66 Aligned_cols=185 Identities=14% Similarity=0.187 Sum_probs=125.6
Q ss_pred HHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeE--EEEe-------cCCCCCHHHHHHHHH----hcCC
Q 043830 40 IEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLV--TIIV-------PRHPQHGKEIAQKLQ----KEGE 104 (248)
Q Consensus 40 ~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~--lviv-------G~~~~~~~~l~~~~~----~~~l 104 (248)
.+.++++++++++++...+. .|++...+.||..+.+++|+++ ++++ ++++++ +++++.+. +.+-
T Consensus 353 ~~~lr~~~~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY-~~l~~~V~~~V~rIN~ 431 (934)
T PLN03064 353 IKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEY-QKLTSQVHEIVGRING 431 (934)
T ss_pred HHHHHHHhCCceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHH-HHHHHHHHHHHHHHhh
Confidence 45778888888888876654 3788899999999888899864 5555 333443 44444432 2211
Q ss_pred ceEEecccCCCCCCccEEEEc---ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhh-----CCcEEECCCCCChHH
Q 043830 105 VVALRSRHEKLMPRTNVYVVD---TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAA-----GCAVLTGPHIGHYSN 176 (248)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~-----G~Pvi~~~~~~~~~~ 176 (248)
.. -..+ ...|.+.. ++.++..+|+.||++++ +|+.||| +++..|+|+| |.+|+ +.-. +
T Consensus 432 ~f--g~~~-----w~Pv~~~~~~l~~eeL~AlY~~ADV~lv-TslrDGm-NLva~Eyva~~~~~~GvLIL-SEfa----G 497 (934)
T PLN03064 432 RF--GTLT-----AVPIHHLDRSLDFHALCALYAVTDVALV-TSLRDGM-NLVSYEFVACQDSKKGVLIL-SEFA----G 497 (934)
T ss_pred hc--cCCC-----cceEEEeccCCCHHHHHHHHHhCCEEEe-Ccccccc-CchHHHHHHhhcCCCCCeEE-eCCC----c
Confidence 10 0111 12344333 46899999999999654 7888987 8999999999 45555 5433 2
Q ss_pred HHHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Q 043830 177 MVSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFH 241 (248)
Q Consensus 177 ~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 241 (248)
....+ .. .++++.|.|.++++++|.+.|+ +++.++++.++.++++..+ +..-++++++.+...
T Consensus 498 aa~~L-~~-~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 498 AAQSL-GA-GAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELNDT 562 (934)
T ss_pred hHHHh-CC-ceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 33333 11 2377888999999999999999 8999999999999998776 344445555555543
No 90
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.42 E-value=4.6e-11 Score=105.76 Aligned_cols=215 Identities=13% Similarity=0.109 Sum_probs=130.3
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhc-CCCe-EEEE-eCCCc---chHHHHHHHHHHHHH
Q 043830 2 TLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASL-AHRQ-VWMA-SSIHR---GEEKVMLAVHKVLMQ 75 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~-~~~~-v~l~-~~~~~---~~~~~ll~a~~~l~~ 75 (248)
+.+++.|.+.|+ ++.++|||..|...... . . .+ ++.+ +++. +|+.. +....+++++..+.+
T Consensus 169 ~~t~~~l~~~g~---k~~~vGnPv~d~l~~~~---~---~----~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~ 235 (396)
T TIGR03492 169 RLTARDLRRQGV---RASYLGNPMMDGLEPPE---R---K----PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPD 235 (396)
T ss_pred HHHHHHHHHCCC---eEEEeCcCHHhcCcccc---c---c----ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhh
Confidence 456778888887 59999999776543110 0 0 12 2333 4444 44322 334588999998866
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEec--ccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRS--RHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
+ +++.+++.-.+....+.+++...+.++...... ..... ....+.+.....++..+|+.||++++ .+ |.
T Consensus 236 ~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~ADlvI~-----rS--Gt 306 (396)
T TIGR03492 236 S-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLF-QKGTLEVLLGRGAFAEILHWADLGIA-----MA--GT 306 (396)
T ss_pred C-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhh-ccCceEEEechHhHHHHHHhCCEEEE-----Cc--CH
Confidence 5 788776654223333677776665555321000 00000 01224444455689999999999765 22 34
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHHHHHHhc----CCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchh
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMVSAMQRL----NPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSG 229 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~----g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 229 (248)
+..|++++|+|+|+.|.. +.+..+..+... |....+...+++.|++++..+++|++.+++|.+++++... ..+
T Consensus 307 ~T~E~a~lg~P~Ilip~~-~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg--~~~ 383 (396)
T TIGR03492 307 ATEQAVGLGKPVIQLPGK-GPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERCRRNGQERMG--PPG 383 (396)
T ss_pred HHHHHHHhCCCEEEEeCC-CCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHhcC--CCC
Confidence 459999999999997622 223333333331 3223333467899999999999999999888854444321 357
Q ss_pred HHHHHHHHHHHH
Q 043830 230 IVANVWNLLNFH 241 (248)
Q Consensus 230 ~~~~~l~~~~~~ 241 (248)
+++++.+.+.++
T Consensus 384 a~~~ia~~i~~~ 395 (396)
T TIGR03492 384 ASARIAESILKQ 395 (396)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 91
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.39 E-value=4.6e-11 Score=103.56 Aligned_cols=174 Identities=13% Similarity=0.008 Sum_probs=110.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCCcchHHHHHHHHHHHHHhCCCe
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNL 80 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~ 80 (248)
|+.+++.|.+.|++.++|.++++. +...... .+.....++.++++|+..+. .. + ....+++
T Consensus 131 S~~~~~~l~~~g~~~~~i~~~~~~--~~~~~~~---------~~~~~~~~~~i~yaG~l~k~-~~-l------~~~~~~~ 191 (333)
T PRK09814 131 SKKMKDRLVEEGLTTDKIIVQGIF--DYLNDIE---------LVKTPSFQKKINFAGNLEKS-PF-L------KNWSQGI 191 (333)
T ss_pred CHHHHHHHHHcCCCcCceEecccc--ccccccc---------ccccccCCceEEEecChhhc-hH-H------HhcCCCC
Confidence 678899999999988889887653 3211000 00011234466776655432 11 2 1134789
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCcc------CC----
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSF------LP---- 148 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~------~e---- 148 (248)
+|+|+|+|+++ . ... .+|.|.|. .++++.+|+. |+.++..+. .+
T Consensus 192 ~l~i~G~g~~~-~---------~~~-------------~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~ 247 (333)
T PRK09814 192 KLTVFGPNPED-L---------ENS-------------ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKY 247 (333)
T ss_pred eEEEECCCccc-c---------ccC-------------CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhc
Confidence 99999998865 2 111 24555553 3689999988 655553221 11
Q ss_pred CCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh
Q 043830 149 GLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 149 ~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
. .++.+.|+||||+|||+++.+ ... +.+.+++. ++.+++.+++++++..+. ++.+++|++++++.....
T Consensus 248 ~-~P~K~~~ymA~G~PVI~~~~~-~~~---~~V~~~~~--G~~v~~~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 248 N-NPHKLSLYLAAGLPVIVWSKA-AIA---DFIVENGL--GFVVDSLEELPEIIDNIT--EEEYQEMVENVKKISKLL 316 (333)
T ss_pred c-chHHHHHHHHCCCCEEECCCc-cHH---HHHHhCCc--eEEeCCHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHH
Confidence 1 144589999999999997653 443 34445554 444568899999999863 577899999999988766
No 92
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=1.9e-10 Score=100.00 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=123.6
Q ss_pred HcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC-CCeEEEE-eCCC-cchHHH-HHHHHHHHHHhCCCeEEEEe
Q 043830 10 LLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA-HRQVWMA-SSIH-RGEEKV-MLAVHKVLMQKNPNLVTIIV 85 (248)
Q Consensus 10 ~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~-~~~v~l~-~~~~-~~~~~~-ll~a~~~l~~~~~~~~lviv 85 (248)
..+.+++++.++|||....... ++ ....+.... +++++++ ||.. .+.+.. +.++...+.+ ++.++..
T Consensus 148 ~~~~~~~~~~~tG~Pvr~~~~~----~~--~~~~~~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~ 218 (357)
T COG0707 148 EAGVKPENVVVTGIPVRPEFEE----LP--AAEVRKDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQ 218 (357)
T ss_pred cccCCCCceEEecCcccHHhhc----cc--hhhhhhhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEE
Confidence 3567777899999874211111 01 122222222 5565544 4332 233333 3333333322 4665555
Q ss_pred cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcE
Q 043830 86 PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAV 165 (248)
Q Consensus 86 G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pv 165 (248)
.+... .+++++.-.+++. . .+.....+|..+|+.||++++ .+ |+.++.|.+++|+|+
T Consensus 219 ~G~~~-~~~~~~~~~~~~~-~---------------~v~~f~~dm~~~~~~ADLvIs-----Ra-Ga~Ti~E~~a~g~P~ 275 (357)
T COG0707 219 TGKND-LEELKSAYNELGV-V---------------RVLPFIDDMAALLAAADLVIS-----RA-GALTIAELLALGVPA 275 (357)
T ss_pred cCcch-HHHHHHHHhhcCc-E---------------EEeeHHhhHHHHHHhccEEEe-----CC-cccHHHHHHHhCCCE
Confidence 44333 3566665555543 1 222334589999999999754 33 689999999999999
Q ss_pred EECCCCCC---hHH-HHHHHHhcCCceEEEcC--CHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 043830 166 LTGPHIGH---YSN-MVSAMQRLNPKSVLQVS--GKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLN 239 (248)
Q Consensus 166 i~~~~~~~---~~~-~~~~~~~~g~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (248)
|.-|-... .++ ....+.+.|.+..+.-. +++.+.+.|.+++++|+..++|.+++++.. .+.+++++.+.+.
T Consensus 276 IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~---~p~aa~~i~~~~~ 352 (357)
T COG0707 276 ILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG---KPDAAERIADLLL 352 (357)
T ss_pred EEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHH
Confidence 98554322 443 56778888865555443 478999999999999999999999998864 4577778877776
Q ss_pred HHh
Q 043830 240 FHV 242 (248)
Q Consensus 240 ~~~ 242 (248)
...
T Consensus 353 ~~~ 355 (357)
T COG0707 353 ALA 355 (357)
T ss_pred HHh
Confidence 654
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.25 E-value=2.7e-10 Score=103.82 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=114.6
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCC--CHHHHHHHHHhcCCceEE---ecc----c--------C-CCCCC
Q 043830 57 SIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ--HGKEIAQKLQKEGEVVAL---RSR----H--------E-KLMPR 118 (248)
Q Consensus 57 ~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~--~~~~l~~~~~~~~l~~~~---~~~----~--------~-~~~~~ 118 (248)
....|.++.+|+|+.++.++.|++.|.+.|.+.+ ....+++.+.++++.... .+. . . .....
T Consensus 329 rL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (519)
T TIGR03713 329 GLSDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEK 408 (519)
T ss_pred CCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccc
Confidence 3434678899999999999999999999997653 235666666766554110 000 0 0 00001
Q ss_pred ccEEEEcChh--HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHH
Q 043830 119 TNVYVVDTLG--ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKS 196 (248)
Q Consensus 119 ~~v~~~~~~~--~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~ 196 (248)
.+|.|.+... ++...|..+.+ ++..|..||| + +.+||++.|+|+|- .+ . .+.+ .+...|.++ +|.+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl-~id~s~~eg~-~-~~ieAiS~GiPqIn--yg-~-~~~V---~d~~NG~li--~d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL-IIDLSKEPDL-Y-TQISGISAGIPQIN--KV-E-TDYV---EHNKNGYII--DDIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE-EEECCCCCCh-H-HHHHHHHcCCCeee--cC-C-ceee---EcCCCcEEe--CCHH
Confidence 4677878666 89999999999 5677888986 6 89999999999993 11 1 1333 333444555 9999
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHHHHhc
Q 043830 197 ELEEALSQLFSDARVLEAQQMAAKQAFCALS 227 (248)
Q Consensus 197 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 227 (248)
+|++++..+|.++...+++...+.+.+.++.
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887653
No 94
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=2.6e-10 Score=102.32 Aligned_cols=183 Identities=11% Similarity=0.053 Sum_probs=125.5
Q ss_pred HHHHHHhcC-----CCeEEEEeCC--CcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCH-HHHHHHHHhcCCceEEecc
Q 043830 40 IEDLKASLA-----HRQVWMASSI--HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHG-KEIAQKLQKEGEVVALRSR 111 (248)
Q Consensus 40 ~~~~r~~~~-----~~~v~l~~~~--~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~-~~l~~~~~~~~l~~~~~~~ 111 (248)
+..++.+++ +.|++.+.|+ +.|+++.+++++..+.+.. +++||.|.+.... ..+..+++...-
T Consensus 279 k~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~------- 349 (487)
T COG0297 279 KVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHPG------- 349 (487)
T ss_pred HHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCc-------
Confidence 345555654 4477777665 4688999999999988764 8999999983322 344444444321
Q ss_pred cCCCCCCccEE-EEcChh-HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHH-----Hhc
Q 043830 112 HEKLMPRTNVY-VVDTLG-ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAM-----QRL 184 (248)
Q Consensus 112 ~~~~~~~~~v~-~~~~~~-~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~-----~~~ 184 (248)
++. .++... --..+|+.||++ +.||..|++ |++-++||.+|++.|+.+ +|+..+.+... ...
T Consensus 350 --------~~~~~i~~~~~la~~i~agaD~~-lmPSrfEPc-GL~ql~amryGtvpIv~~-tGGLadTV~~~~~~~~~~~ 418 (487)
T COG0297 350 --------RVLVVIGYDEPLAHLIYAGADVI-LMPSRFEPC-GLTQLYAMRYGTLPIVRE-TGGLADTVVDRNEWLIQGV 418 (487)
T ss_pred --------eEEEEeeecHHHHHHHHhcCCEE-EeCCcCcCC-cHHHHHHHHcCCcceEcc-cCCccceecCccchhccCc
Confidence 122 122222 347789999995 568988986 999999999999877754 45666544321 124
Q ss_pred CCceEEEcCCHHHHHHHHHHhhh---CHHH-HHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhhh
Q 043830 185 NPKSVLQVSGKSELEEALSQLFS---DARV-LEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 185 g~g~~~~~~~~~~l~~~i~~ll~---~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 244 (248)
|+|+.+...|+++|+.+|..-+. ++.. .+.+..++-. ..+ |+.++.++.+.|++++..
T Consensus 419 gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 419 GTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred eeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHHHHHHHHHhcc
Confidence 77788888999999999987664 4433 5555554443 234 899999999999998764
No 95
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.24 E-value=4.9e-11 Score=96.09 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC---hhHHHHHHhh
Q 043830 60 RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT---LGELRQLYKL 136 (248)
Q Consensus 60 ~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~y~~ 136 (248)
.|+.+.+++++..+.++.|+++++++|.+... ......+.+.+.. .+|.+.+. .+++..+++.
T Consensus 116 ~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~-~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~~~~~~~ 181 (229)
T cd01635 116 EKGLDDLIEAFALLKERGPDLKLVIAGDGPER-EYLEELLAALLLL-------------DRVIFLGGLDPEELLALLLAA 181 (229)
T ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEeCCCCh-HHHHHHHHhcCCc-------------ccEEEeCCCCcHHHHHHHhhc
Confidence 46788999999999888899999999987764 4444434454443 35566664 4567777888
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI 171 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~ 171 (248)
||++ +.+|..|++ |.+++|||++|+|||+++..
T Consensus 182 ~di~-l~~~~~e~~-~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 182 ADVF-VLPSLREGF-GLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred CCEE-EecccccCc-ChHHHHHHhCCCCEEEcCCC
Confidence 9995 567877875 89999999999999998764
No 96
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=6.4e-10 Score=95.63 Aligned_cols=211 Identities=13% Similarity=0.136 Sum_probs=137.2
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCC---CCCCcccHHHHHHhcCCCeEEEEeC-CCc---chHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDE---SEGDIGSIEDLKASLAHRQVWMASS-IHR---GEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~---~~~~~~~~~~~r~~~~~~~v~l~~~-~~~---~~~~~ll~a~~~l 73 (248)
|+..+++|.+.|+++++|.|+||+..|..... ...+......+ -...++.++++.. ++. +....+++++.++
T Consensus 153 te~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~-~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i 231 (383)
T COG0381 153 TEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKG-LDDKDKKYILVTAHRRENVGEPLEEICEALREI 231 (383)
T ss_pred hHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhh-hccccCcEEEEEcchhhcccccHHHHHHHHHHH
Confidence 46789999999999999999999876643211 00000001111 1112334555442 221 3467889999999
Q ss_pred HHhCCCeEEEEecCCCCCHHHHHHHH-HhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCC
Q 043830 74 MQKNPNLVTIIVPRHPQHGKEIAQKL-QKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGL 150 (248)
Q Consensus 74 ~~~~~~~~lvivG~~~~~~~~l~~~~-~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~ 150 (248)
...+++.. +|.+-|+. ..+++.. ..++- ..+|.+.++. .+...++..|-++ ++ ++
T Consensus 232 ~~~~~~~~-viyp~H~~--~~v~e~~~~~L~~-------------~~~v~li~pl~~~~f~~L~~~a~~i-lt----DS- 289 (383)
T COG0381 232 AEEYPDVI-VIYPVHPR--PRVRELVLKRLKN-------------VERVKLIDPLGYLDFHNLMKNAFLI-LT----DS- 289 (383)
T ss_pred HHhCCCce-EEEeCCCC--hhhhHHHHHHhCC-------------CCcEEEeCCcchHHHHHHHHhceEE-Ee----cC-
Confidence 98888775 67787776 3444444 22221 2357777765 4667788888664 33 22
Q ss_pred CCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhH
Q 043830 151 AGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGI 230 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 230 (248)
||. .-||..+|+||++-......+|.+ ++|+ ..+...+.+.+.+++..++++++.+++|++....|- ...+
T Consensus 290 Ggi-qEEAp~lg~Pvl~lR~~TERPE~v----~agt-~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~~~npYg---dg~a 360 (383)
T COG0381 290 GGI-QEEAPSLGKPVLVLRDTTERPEGV----EAGT-NILVGTDEENILDAATELLEDEEFYERMSNAKNPYG---DGNA 360 (383)
T ss_pred Cch-hhhHHhcCCcEEeeccCCCCccce----ecCc-eEEeCccHHHHHHHHHHHhhChHHHHHHhcccCCCc---Ccch
Confidence 232 469999999999865555555543 3442 333346889999999999999999999988655442 3568
Q ss_pred HHHHHHHHHHHhh
Q 043830 231 VANVWNLLNFHVF 243 (248)
Q Consensus 231 ~~~~l~~~~~~~~ 243 (248)
++|+++.+.....
T Consensus 361 s~rIv~~l~~~~~ 373 (383)
T COG0381 361 SERIVEILLNYFD 373 (383)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887654
No 97
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=2.8e-09 Score=91.54 Aligned_cols=210 Identities=14% Similarity=0.154 Sum_probs=131.1
Q ss_pred HHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeEE-EEeCCCcchH----HHHHHHHHHHH
Q 043830 3 LQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQVW-MASSIHRGEE----KVMLAVHKVLM 74 (248)
Q Consensus 3 ~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v~-l~~~~~~~~~----~~ll~a~~~l~ 74 (248)
.+.+.+.+.|++ .+.+||+..|...- ...++.+|+.++ +++++ +..|.+..++ ..+++|++.++
T Consensus 146 FE~~~y~k~g~~---~~yVGHpl~d~i~~-----~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~ 217 (381)
T COG0763 146 FEPAFYDKFGLP---CTYVGHPLADEIPL-----LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELK 217 (381)
T ss_pred CCHHHHHhcCCC---eEEeCChhhhhccc-----cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 456778889998 78899987665420 113456777775 44443 3434455554 46788888998
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHh-cCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQK-EGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
.++|+.++++--... ..+.+.....+ .... ..+++.+ ++-.+.|..||+++. . .|.
T Consensus 218 ~~~~~~~~vlp~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~a~~~aD~al~-----a--SGT 274 (381)
T COG0763 218 ARYPDLKFVLPLVNA-KYRRIIEEALKWEVAG-------------LSLILID--GEKRKAFAAADAALA-----A--SGT 274 (381)
T ss_pred hhCCCceEEEecCcH-HHHHHHHHHhhccccC-------------ceEEecC--chHHHHHHHhhHHHH-----h--ccH
Confidence 899999987744433 32444443322 2110 1233333 366789999999765 2 277
Q ss_pred CHHHHHhhCCcEEECCCCCChHH-HHHHHHhcCCc---------eEEE-----cCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSN-MVSAMQRLNPK---------SVLQ-----VSGKSELEEALSQLFSDARVLEAQQMA 218 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~-~~~~~~~~g~g---------~~~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~~ 218 (248)
+.+|+|.+|+|+|++....-+.- +....+.-... .+++ .-.++.|++++..++.|+..++++.+.
T Consensus 275 ~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~ 354 (381)
T COG0763 275 ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEK 354 (381)
T ss_pred HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHH
Confidence 88999999999999776543332 22222221100 0111 136899999999999999888888777
Q ss_pred HHHHHHHhchh-HHHHHHHHHHHHhh
Q 043830 219 AKQAFCALSSG-IVANVWNLLNFHVF 243 (248)
Q Consensus 219 ~~~~~~~~~~~-~~~~~l~~~~~~~~ 243 (248)
.++.-+....+ +.++..+.+.+++.
T Consensus 355 ~~~l~~~l~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 355 FRELHQYLREDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence 76654443444 77777777766653
No 98
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.14 E-value=4.4e-10 Score=78.87 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=63.2
Q ss_pred cCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 043830 143 GGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 222 (248)
.++...++ +..++|+||||+|||+.+.. +..+.+ ..|. .++..+|++++.+++..+++||+++++++++|+++
T Consensus 4 n~~~~~~~-~~r~~E~~a~G~~vi~~~~~----~~~~~~-~~~~-~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 4 NPSRSDGP-NMRIFEAMACGTPVISDDSP----GLREIF-EDGE-HIITYNDPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred eCCCCCCC-chHHHHHHHCCCeEEECChH----HHHHHc-CCCC-eEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 34554543 56789999999999985432 333333 3332 34555799999999999999999999999999999
Q ss_pred HHHh--chhHHHHHH
Q 043830 223 FCAL--SSGIVANVW 235 (248)
Q Consensus 223 ~~~~--~~~~~~~~l 235 (248)
+.+. |...+++++
T Consensus 77 v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 77 VLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHhCCHHHHHHHHH
Confidence 9754 566665554
No 99
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.13 E-value=5.1e-09 Score=91.38 Aligned_cols=189 Identities=13% Similarity=0.206 Sum_probs=118.9
Q ss_pred HHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhc-C-CCeEE-EEeCCCcchH----HHHHHHHHHHHH
Q 043830 3 LQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASL-A-HRQVW-MASSIHRGEE----KVMLAVHKVLMQ 75 (248)
Q Consensus 3 ~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~-~-~~~v~-l~~~~~~~~~----~~ll~a~~~l~~ 75 (248)
.+.+.+.+.|++ ++.+|||..|..... ......++.+ . +.+++ +..|.+++++ ..+++++..+.+
T Consensus 143 FE~~~y~~~g~~---~~~VGHPl~d~~~~~-----~~~~~~~~~~l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~ 214 (373)
T PF02684_consen 143 FEPEFYKKHGVP---VTYVGHPLLDEVKPE-----PDRAEAREKLLDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK 214 (373)
T ss_pred ccHHHHhccCCC---eEEECCcchhhhccC-----CCHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467788889986 889999987764321 1123333332 3 55544 3444455554 466899999999
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
++|++++++........+.+++.....+... .+.+.. ++-.++|+.||++++. .|.+.
T Consensus 215 ~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~-------------~~~~~~--~~~~~~m~~ad~al~~-------SGTaT 272 (373)
T PF02684_consen 215 QRPDLQFVVPVAPEVHEELIEEILAEYPPDV-------------SIVIIE--GESYDAMAAADAALAA-------SGTAT 272 (373)
T ss_pred hCCCeEEEEecCCHHHHHHHHHHHHhhCCCC-------------eEEEcC--CchHHHHHhCcchhhc-------CCHHH
Confidence 9999998876543332222444444433211 122221 3667889999997662 26788
Q ss_pred HHHHhhCCcEEECCCCCChHH-HHHHHHhcCCceE----------------EEcCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 043830 156 SEAAAAGCAVLTGPHIGHYSN-MVSAMQRLNPKSV----------------LQVSGKSELEEALSQLFSDARVLEAQQMA 218 (248)
Q Consensus 156 lEA~a~G~Pvi~~~~~~~~~~-~~~~~~~~g~g~~----------------~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 218 (248)
+|++.+|+|+|+....+-+.. +...+.+.. ++ ..-.+++.+++++..+++|++.++.....
T Consensus 273 LE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~--~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~ 350 (373)
T PF02684_consen 273 LEAALLGVPMVVAYKVSPLTYFIAKRLVKVK--YISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKEL 350 (373)
T ss_pred HHHHHhCCCEEEEEcCcHHHHHHHHHhhcCC--EeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999776654443 333333322 11 11248999999999999999886666555
Q ss_pred HHHHH
Q 043830 219 AKQAF 223 (248)
Q Consensus 219 ~~~~~ 223 (248)
.+...
T Consensus 351 ~~~~~ 355 (373)
T PF02684_consen 351 FREIR 355 (373)
T ss_pred HHHHH
Confidence 55543
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.05 E-value=2.4e-09 Score=93.13 Aligned_cols=204 Identities=17% Similarity=0.169 Sum_probs=112.1
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccH--HHHHHhcCCCeEEEEeC-C---Cc--chHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSI--EDLKASLAHRQVWMASS-I---HR--GEEKVMLAVHKV 72 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~--~~~r~~~~~~~v~l~~~-~---~~--~~~~~ll~a~~~ 72 (248)
++..+++|.++|++++||.++||+.+|......+...+.. ..+... ..++++++.. + .. .....+.+++..
T Consensus 130 t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~ 208 (346)
T PF02350_consen 130 TEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKA 208 (346)
T ss_dssp SHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHH
Confidence 4678899999999999999999998875421000000111 111111 3445555432 1 11 124577888888
Q ss_pred HHHhCCCeEEEEecCC-CCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCC
Q 043830 73 LMQKNPNLVTIIVPRH-PQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPG 149 (248)
Q Consensus 73 l~~~~~~~~lvivG~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~ 149 (248)
+.+. +++.+|+..+. |.....+.+.+.++. ++.+..+ +.++-.+++.|+++ ++-|
T Consensus 209 L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~----------------~v~~~~~l~~~~~l~ll~~a~~v-vgdS---- 266 (346)
T PF02350_consen 209 LAER-QNVPVIFPLHNNPRGSDIIIEKLKKYD----------------NVRLIEPLGYEEYLSLLKNADLV-VGDS---- 266 (346)
T ss_dssp HHHH-TTEEEEEE--S-HHHHHHHHHHHTT-T----------------TEEEE----HHHHHHHHHHESEE-EESS----
T ss_pred HHhc-CCCcEEEEecCCchHHHHHHHHhcccC----------------CEEEECCCCHHHHHHHHhcceEE-EEcC----
Confidence 8776 77776665442 333244544444331 3445543 35788889999995 4432
Q ss_pred CCCCCHH-HHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-c
Q 043830 150 LAGHNIS-EAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-S 227 (248)
Q Consensus 150 ~gg~~~l-EA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~ 227 (248)
| .+. ||.++|+|+|.-...+..++.. ..+. .++...|.+++.++|.++++++.....+.. ....+ .
T Consensus 267 --s-GI~eEa~~lg~P~v~iR~~geRqe~r----~~~~-nvlv~~~~~~I~~ai~~~l~~~~~~~~~~~----~~npYgd 334 (346)
T PF02350_consen 267 --S-GIQEEAPSLGKPVVNIRDSGERQEGR----ERGS-NVLVGTDPEAIIQAIEKALSDKDFYRKLKN----RPNPYGD 334 (346)
T ss_dssp --H-HHHHHGGGGT--EEECSSS-S-HHHH----HTTS-EEEETSSHHHHHHHHHHHHH-HHHHHHHHC----S--TT-S
T ss_pred --c-cHHHHHHHhCCeEEEecCCCCCHHHH----hhcc-eEEeCCCHHHHHHHHHHHHhChHHHHhhcc----CCCCCCC
Confidence 3 466 9999999999865555665543 2333 344458999999999999988554444332 11223 4
Q ss_pred hhHHHHHHHHHH
Q 043830 228 SGIVANVWNLLN 239 (248)
Q Consensus 228 ~~~~~~~l~~~~ 239 (248)
..+++|+++.++
T Consensus 335 G~as~rI~~~Lk 346 (346)
T PF02350_consen 335 GNASERIVEILK 346 (346)
T ss_dssp S-HHHHHHHHHH
T ss_pred CcHHHHHHHhhC
Confidence 788999988774
No 101
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.03 E-value=1.9e-08 Score=88.34 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=113.0
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeEEEE-eCC----Ccc---hHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQVWMA-SSI----HRG---EEKVMLAV 69 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v~l~-~~~----~~~---~~~~ll~a 69 (248)
++..+++|.+.|+++++|.++||+.+|....... .....+.++++ +++++++ .-. ..+ .+..++++
T Consensus 152 t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~---~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~ 228 (365)
T TIGR03568 152 TEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDL---LSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKA 228 (365)
T ss_pred CHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhc---cCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHH
Confidence 3567888999999999999999988775431110 11244555554 3344333 211 111 23455555
Q ss_pred HHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccC
Q 043830 70 HKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFL 147 (248)
Q Consensus 70 ~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~ 147 (248)
+..+ ..++ +++.+.+....+.+.+.+.++.-. ..+|.++++ +.++..+++.|+++ ++.|.
T Consensus 229 L~~~---~~~~-~vi~P~~~p~~~~i~~~i~~~~~~------------~~~v~l~~~l~~~~~l~Ll~~a~~v-itdSS- 290 (365)
T TIGR03568 229 LDEL---NKNY-IFTYPNADAGSRIINEAIEEYVNE------------HPNFRLFKSLGQERYLSLLKNADAV-IGNSS- 290 (365)
T ss_pred HHHh---ccCC-EEEEeCCCCCchHHHHHHHHHhcC------------CCCEEEECCCChHHHHHHHHhCCEE-EEcCh-
Confidence 5433 2344 445555433224444444443100 125677773 56899999999995 44331
Q ss_pred CCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEE-cCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh
Q 043830 148 PGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQ-VSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 148 e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
||+ .||+++|+|+|.- ++.++..+ .|. .++. ..|++++.+++.+++ +++.++.+... ...+
T Consensus 291 ---ggi--~EA~~lg~Pvv~l---~~R~e~~~----~g~-nvl~vg~~~~~I~~a~~~~~-~~~~~~~~~~~----~~py 352 (365)
T TIGR03568 291 ---SGI--IEAPSFGVPTINI---GTRQKGRL----RAD-SVIDVDPDKEEIVKAIEKLL-DPAFKKSLKNV----KNPY 352 (365)
T ss_pred ---hHH--HhhhhcCCCEEee---cCCchhhh----hcC-eEEEeCCCHHHHHHHHHHHh-ChHHHHHHhhC----CCCC
Confidence 234 7999999999962 24445442 232 3343 469999999999954 54443333211 1223
Q ss_pred -chhHHHHHHHH
Q 043830 227 -SSGIVANVWNL 237 (248)
Q Consensus 227 -~~~~~~~~l~~ 237 (248)
...+++|+++.
T Consensus 353 gdg~as~rI~~~ 364 (365)
T TIGR03568 353 GDGNSSERIIEI 364 (365)
T ss_pred CCChHHHHHHHh
Confidence 35688888765
No 102
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.00 E-value=4.6e-09 Score=93.80 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh-HHHHHHhhCCEEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG-ELRQLYKLTPIAVI 142 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~y~~ad~~~v 142 (248)
+..|+++..|.+..||+.|=| |.+.+..+.|.++ .++ ++ .+.+.+... ++.++|..||+ ++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y--~n-------------vvly~~~~~~~l~~ly~~~dl-yL 352 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY--DN-------------VKLYPNITTQKIQELYQTCDI-YL 352 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc--CC-------------cEEECCcChHHHHHHHHhccE-EE
Confidence 678999999999999999998 7666533677777 554 32 234445333 88999999999 56
Q ss_pred cCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 043830 143 GGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 222 (248)
-.|..|++ ++.+.||+..|+||++-+...+-++.+ ..| .++..+++++|+++|.++|+|++..++.-..-++.
T Consensus 353 din~~e~~-~~al~eA~~~G~pI~afd~t~~~~~~i----~~g--~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~ 425 (438)
T TIGR02919 353 DINHGNEI-LNAVRRAFEYNLLILGFEETAHNRDFI----ASE--NIFEHNEVDQLISKLKDLLNDPNQFRELLEQQREH 425 (438)
T ss_pred EccccccH-HHHHHHHHHcCCcEEEEecccCCcccc----cCC--ceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67887886 899999999999999744332222222 223 68889999999999999999997766654444443
No 103
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.5e-08 Score=82.11 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=118.6
Q ss_pred CCeEEEEeCC-C-c-chHHHHHHHHHHH-----HH--hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCC
Q 043830 49 HRQVWMASSI-H-R-GEEKVMLAVHKVL-----MQ--KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPR 118 (248)
Q Consensus 49 ~~~v~l~~~~-~-~-~~~~~ll~a~~~l-----~~--~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 118 (248)
.++.+++.|+ | + .++.+|++|+... .+ ..|.+.++|-|.||.+ +...+++.++++..+....
T Consensus 253 ~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlk-E~Y~~~I~~~~~~~v~~~t------- 324 (444)
T KOG2941|consen 253 ERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLK-EKYSQEIHEKNLQHVQVCT------- 324 (444)
T ss_pred CCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchh-HHHHHHHHHhcccceeeee-------
Confidence 5676666654 4 2 4578899998732 11 2478888899999987 7778888988886432211
Q ss_pred ccEEEEcChhHHHHHHhhCCEEEEcCccCCC--CCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHH
Q 043830 119 TNVYVVDTLGELRQLYKLTPIAVIGGSFLPG--LAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKS 196 (248)
Q Consensus 119 ~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~--~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~ 196 (248)
.| -..++.+.+++.||+-++.-..+.| . ++.+++=..||+||++- +|+-+-+.+.++.+ ++...|.+
T Consensus 325 --pW--L~aEDYP~ll~saDlGVcLHtSSSGLDL-PMKVVDMFGcglPvcA~----~fkcl~ELVkh~eN--GlvF~Ds~ 393 (444)
T KOG2941|consen 325 --PW--LEAEDYPKLLASADLGVCLHTSSSGLDL-PMKVVDMFGCGLPVCAV----NFKCLDELVKHGEN--GLVFEDSE 393 (444)
T ss_pred --cc--cccccchhHhhccccceEeeecCcccCc-chhHHHhhcCCCceeee----cchhHHHHHhcCCC--ceEeccHH
Confidence 11 1235789999999987662111111 3 67899999999999984 34333333333333 44568999
Q ss_pred HHHHHHHHhhh----CHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 043830 197 ELEEALSQLFS----DARVLEAQQMAAKQAFCALSSGIVANVWN 236 (248)
Q Consensus 197 ~l~~~i~~ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (248)
+|++.+..|++ |.....++..+.++..+..|+..+++++.
T Consensus 394 eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~RW~~~W~~~~~ 437 (444)
T KOG2941|consen 394 ELAEQLQMLFKNFPDNADELNQLKKNLREEQELRWDESWERTAL 437 (444)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhHHHHHHHhhh
Confidence 99999999999 88999999999998855558888888876
No 104
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.96 E-value=2.1e-07 Score=81.33 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=68.9
Q ss_pred hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC-----CChHHHHHHHHhcCCceEEEc--CCHHHHHH
Q 043830 128 GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI-----GHYSNMVSAMQRLNPKSVLQV--SGKSELEE 200 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~-----~~~~~~~~~~~~~g~g~~~~~--~~~~~l~~ 200 (248)
++|+.+|+.||+++. .+ |+.++.|++++|+|+|..|.. +.-....+.+.+.|.+..+.. -+++.|.+
T Consensus 244 ~~m~~~~~~adlvIs-----r~-G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~ 317 (352)
T PRK12446 244 GELPDILAITDFVIS-----RA-GSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIK 317 (352)
T ss_pred hhHHHHHHhCCEEEE-----CC-ChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHH
Confidence 479999999999665 33 578899999999999987542 122235567777664333322 26899999
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 043830 201 ALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLN 239 (248)
Q Consensus 201 ~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (248)
++..+++|++.+++ ++++.. ...+++++++.+.
T Consensus 318 ~l~~ll~~~~~~~~---~~~~~~---~~~aa~~i~~~i~ 350 (352)
T PRK12446 318 HVEELSHNNEKYKT---ALKKYN---GKEAIQTIIDHIS 350 (352)
T ss_pred HHHHHHcCHHHHHH---HHHHcC---CCCHHHHHHHHHH
Confidence 99999999877543 222211 4577777777664
No 105
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.91 E-value=1.3e-07 Score=84.40 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=96.5
Q ss_pred CCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHh
Q 043830 58 IHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYK 135 (248)
Q Consensus 58 ~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~ 135 (248)
...|-....++++.++.+.-|+.+|++........+.+.+.+.+.|+.. .++.|.+. ..+.-..|+
T Consensus 293 ~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~------------~Ri~f~~~~~~~ehl~~~~ 360 (468)
T PF13844_consen 293 NLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDP------------DRIIFSPVAPREEHLRRYQ 360 (468)
T ss_dssp -GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-G------------GGEEEEE---HHHHHHHGG
T ss_pred ccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCCh------------hhEEEcCCCCHHHHHHHhh
Confidence 3445556789999999999999999887654333367888888888862 46666653 345556789
Q ss_pred hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHH--HHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHH
Q 043830 136 LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSN--MVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLE 213 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~--~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~ 213 (248)
.+|+++= ++-=+ ||.+.+||+.+|+|||+-+. ..+.. ....+...|..- +.+.|.++..+...+|.+|++.++
T Consensus 361 ~~DI~LD--T~p~n-G~TTt~dALwmGVPvVTl~G-~~~~sR~~aSiL~~lGl~E-lIA~s~~eYv~~Av~La~D~~~l~ 435 (468)
T PF13844_consen 361 LADICLD--TFPYN-GGTTTLDALWMGVPVVTLPG-ETMASRVGASILRALGLPE-LIADSEEEYVEIAVRLATDPERLR 435 (468)
T ss_dssp G-SEEE----SSS---SHHHHHHHHHT--EEB----SSGGGSHHHHHHHHHT-GG-GB-SSHHHHHHHHHHHHH-HHHHH
T ss_pred hCCEEee--CCCCC-CcHHHHHHHHcCCCEEeccC-CCchhHHHHHHHHHcCCch-hcCCCHHHHHHHHHHHhCCHHHHH
Confidence 9999643 22112 45668999999999997321 12221 223343334222 245899999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 043830 214 AQQMAAKQAFCAL 226 (248)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (248)
++++.-|+...+.
T Consensus 436 ~lR~~Lr~~~~~S 448 (468)
T PF13844_consen 436 ALRAKLRDRRSKS 448 (468)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhC
Confidence 9999988776443
No 106
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.82 E-value=4.3e-07 Score=80.36 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=74.8
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc--CCHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV--SGKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~--~~~~~ 197 (248)
+|.+.+.... ..+|..||+++. .| |..++.||+++|+|+|+.+...+.......+.+.|.|..+.. -++++
T Consensus 276 ~v~~~~~~p~-~~ll~~~~~~I~-----hg-G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~ 348 (392)
T TIGR01426 276 NVEVRQWVPQ-LEILKKADAFIT-----HG-GMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEK 348 (392)
T ss_pred CeEEeCCCCH-HHHHhhCCEEEE-----CC-CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHH
Confidence 3445554332 478999998654 32 345699999999999998776555556666777776655443 26799
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHV 242 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (248)
|+++|.++++|++.++.+.+.+..... ....++..+.+.+++
T Consensus 349 l~~ai~~~l~~~~~~~~~~~l~~~~~~---~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 349 LREAVLAVLSDPRYAERLRKMRAEIRE---AGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHhh
Confidence 999999999999877666554444322 233445555555543
No 107
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.76 E-value=2.1e-07 Score=78.63 Aligned_cols=177 Identities=12% Similarity=0.107 Sum_probs=111.4
Q ss_pred eEEEE-eCCC-cchHHHHHHHHHHHHHhC------CCeEEEEecC--CC---CCHHHHHHHHHhcCCceEEecccCCCCC
Q 043830 51 QVWMA-SSIH-RGEEKVMLAVHKVLMQKN------PNLVTIIVPR--HP---QHGKEIAQKLQKEGEVVALRSRHEKLMP 117 (248)
Q Consensus 51 ~v~l~-~~~~-~~~~~~ll~a~~~l~~~~------~~~~lvivG~--~~---~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 117 (248)
+.++. +-.+ +|+++ +|+.++....+. ++++|+|+|+ +. ++...+++++.++.++..+.|.
T Consensus 270 ~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~------ 342 (465)
T KOG1387|consen 270 NQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFE------ 342 (465)
T ss_pred eEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEE------
Confidence 34444 4334 36665 566555433333 4589999996 22 2445677888888887533221
Q ss_pred CccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHH
Q 043830 118 RTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSE 197 (248)
Q Consensus 118 ~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~ 197 (248)
.--+..++-.+|..|.+- +..=.-|-| |..+.|+||.|+=.|+-+.+|..-+++..- .|.-.++...+.++
T Consensus 343 -----~N~Py~~lv~lL~~a~iG-vh~MwNEHF-GIsVVEyMAAGlIpi~h~SgGP~lDIV~~~--~G~~tGFla~t~~E 413 (465)
T KOG1387|consen 343 -----KNVPYEKLVELLGKATIG-VHTMWNEHF-GISVVEYMAAGLIPIVHNSGGPLLDIVTPW--DGETTGFLAPTDEE 413 (465)
T ss_pred -----ecCCHHHHHHHhccceee-hhhhhhhhc-chhHHHHHhcCceEEEeCCCCCceeeeecc--CCccceeecCChHH
Confidence 122568999999999774 333344665 999999999999666534333332444321 12223455678889
Q ss_pred HHHHHHHhhh-CHHHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHhh
Q 043830 198 LEEALSQLFS-DARVLEAQQMAAKQAFCALSSGIV-ANVWNLLNFHVF 243 (248)
Q Consensus 198 l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ 243 (248)
-++++.+.+. |++.|..|+++||....+|.+... +.....+.+++.
T Consensus 414 YaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 414 YAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDWENPICKLLE 461 (465)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhc
Confidence 9999999887 677799999999998877743333 333355555554
No 108
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.76 E-value=1.8e-06 Score=79.13 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=112.8
Q ss_pred HHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeEE-EEeCCCcchHH----HHHHHHH--H
Q 043830 3 LQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQVW-MASSIHRGEEK----VMLAVHK--V 72 (248)
Q Consensus 3 ~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v~-l~~~~~~~~~~----~ll~a~~--~ 72 (248)
.+.+.+.+.|++ ++.+|||..|.... . ....++|++++ +.+++ +..|.+++|+. .+++|++ .
T Consensus 371 FE~~~y~~~gv~---v~yVGHPL~d~i~~-~----~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~ 442 (608)
T PRK01021 371 FEQNLFKDSPLR---TVYLGHPLVETISS-F----SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASS 442 (608)
T ss_pred cCHHHHHhcCCC---eEEECCcHHhhccc-C----CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 467788888987 78999998776321 0 12345566654 44544 44444555654 4555554 3
Q ss_pred HHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCC
Q 043830 73 LMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAG 152 (248)
Q Consensus 73 l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg 152 (248)
+. ++.++++....+...+.+++.+.+.++. .+.++.. .+-.++|+.||++++. .|
T Consensus 443 l~---~~l~fvvp~a~~~~~~~i~~~~~~~~~~--------------~~~ii~~-~~~~~~m~aaD~aLaa-------SG 497 (608)
T PRK01021 443 LA---STHQLLVSSANPKYDHLILEVLQQEGCL--------------HSHIVPS-QFRYELMRECDCALAK-------CG 497 (608)
T ss_pred hc---cCeEEEEecCchhhHHHHHHHHhhcCCC--------------CeEEecC-cchHHHHHhcCeeeec-------CC
Confidence 22 3677766433222224555555433210 1112211 1236889999998762 26
Q ss_pred CCHHHHHhhCCcEEECCCCCChHH-HHHHHHhc------------CCceE----E---EcCCHHHHHHHHHHhhhCHHHH
Q 043830 153 HNISEAAAAGCAVLTGPHIGHYSN-MVSAMQRL------------NPKSV----L---QVSGKSELEEALSQLFSDARVL 212 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~~~~~~~~~~-~~~~~~~~------------g~g~~----~---~~~~~~~l~~~i~~ll~~~~~~ 212 (248)
.+.+|++.+|+|+|+....+-+.. +...+.+- |. .+ + ...+++.+++++ +++.|++.+
T Consensus 498 TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr-~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r 575 (608)
T PRK01021 498 TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGS-TIFPEFIGGKKDFQPEEVAAAL-DILKTSQSK 575 (608)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCC-CcchhhcCCcccCCHHHHHHHH-HHhcCHHHH
Confidence 788999999999999776654544 33333330 11 11 1 124799999996 889999988
Q ss_pred HHHHHHHHHHHHHh
Q 043830 213 EAQQMAAKQAFCAL 226 (248)
Q Consensus 213 ~~~~~~~~~~~~~~ 226 (248)
++|.+.-++..+..
T Consensus 576 ~~~~~~l~~lr~~L 589 (608)
T PRK01021 576 EKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888776655443
No 109
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.62 E-value=2.3e-06 Score=76.81 Aligned_cols=188 Identities=12% Similarity=0.132 Sum_probs=113.8
Q ss_pred HHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCe----EEEEec--CCC--CCHHHHHHHHHhcCCc-eEE
Q 043830 40 IEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNL----VTIIVP--RHP--QHGKEIAQKLQKEGEV-VAL 108 (248)
Q Consensus 40 ~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~----~lvivG--~~~--~~~~~l~~~~~~~~l~-~~~ 108 (248)
.+.+++.++++.+++..-+. -|++..=+.||..+.+++|++ .|+-+. .-. ....++++.+.++==. +..
T Consensus 245 ~~~lr~~~~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~ 324 (474)
T PRK10117 245 LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGK 324 (474)
T ss_pred HHHHHHHcCCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 45677778877777765543 377777789999999888864 344332 111 1113344333221000 111
Q ss_pred ecccCCCCCCccEEEEc---ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCc-----EEECCCCCChHHHHHH
Q 043830 109 RSRHEKLMPRTNVYVVD---TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCA-----VLTGPHIGHYSNMVSA 180 (248)
Q Consensus 109 ~~~~~~~~~~~~v~~~~---~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~P-----vi~~~~~~~~~~~~~~ 180 (248)
+.+ .....|.+.. +..++..+|+.||+++|. |+.+|+ -++..|..||..| .|.|.- .+....
T Consensus 325 fg~----~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVT-plRDGM-NLVAkEyva~q~~~~~GvLILSef----AGaA~~ 394 (474)
T PRK10117 325 YGQ----LGWTPLYYLNQHFDRKLLMKIFRYSDVGLVT-PLRDGM-NLVAKEYVAAQDPANPGVLVLSQF----AGAANE 394 (474)
T ss_pred cCC----CCceeEEEecCCCCHHHHHHHHHhccEEEec-cccccc-ccccchheeeecCCCCccEEEecc----cchHHH
Confidence 111 0123455443 457899999999999884 566754 4456999999763 455533 344445
Q ss_pred HHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHH
Q 043830 181 MQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCALS-SGIVANVWNLLNF 240 (248)
Q Consensus 181 ~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 240 (248)
+. + .+.+.|.|.++++++|.+-|+ .++.|++..+.-++++..+. ..=++.+++.+..
T Consensus 395 L~--~-AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~ 453 (474)
T PRK10117 395 LT--S-ALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453 (474)
T ss_pred hC--C-CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Confidence 52 3 267888999999999999998 45666666666667776542 2334445555544
No 110
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.54 E-value=7.7e-06 Score=72.48 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=73.0
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~ 197 (248)
+|.+.+.. .+..+|..||+++. .| |..++.||+++|+|+|+.|...+-....+.+.+.|.|..+... +.++
T Consensus 289 ~v~~~~~~-p~~~ll~~~d~~I~-----hg-G~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~ 361 (401)
T cd03784 289 NVRVVDFV-PHDWLLPRCAAVVH-----HG-GAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAER 361 (401)
T ss_pred ceEEeCCC-CHHHHhhhhheeee-----cC-CchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHH
Confidence 45555544 46788999999653 33 4567999999999999988766655666777777766655443 7899
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLN 239 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (248)
|.+++.++++++ .++++.+.+++.. ......+..+.++
T Consensus 362 l~~al~~~l~~~-~~~~~~~~~~~~~---~~~g~~~~~~~ie 399 (401)
T cd03784 362 LAAALRRLLDPP-SRRRAAALLRRIR---EEDGVPSAADVIE 399 (401)
T ss_pred HHHHHHHHhCHH-HHHHHHHHHHHHH---hccCHHHHHHHHh
Confidence 999999999854 4444444443331 2234444444443
No 111
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.48 E-value=2e-06 Score=75.59 Aligned_cols=208 Identities=14% Similarity=0.162 Sum_probs=105.1
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeEEEEeCCCcchHHH----------H
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQVWMASSIHRGEEKV----------M 66 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~~~~~~~----------l 66 (248)
|+.+++.+.+ .|.+.++|.++|.|.+|...... ....+.+++.++ +++++|++-+|.+.... -
T Consensus 142 s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~---~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~ 218 (369)
T PF04464_consen 142 SEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKS---KENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLD 218 (369)
T ss_dssp SHHHHHHHHHHTT--GGGEEES--GGGHHHHHST---T-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT-
T ss_pred CHHHHHHHHHHhccCcceEEEeCCCeEhHHhccC---HHHHHHHHHHhccCCCCcEEEEeeccccccccccccccccccC
Confidence 5667777765 79999999999988887654211 122456666665 56688877666432111 1
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCcc
Q 043830 67 LAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 67 l~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~ 146 (248)
++.+. ....+++.+++-++ |.. ....... .. ...+|.+.+...++.+++..||+++.
T Consensus 219 ~~~l~--~~~~~~~~li~k~H-p~~----~~~~~~~-~~-----------~~~~i~~~~~~~~~~~ll~~aDiLIT---- 275 (369)
T PF04464_consen 219 FEKLN--FLLKNNYVLIIKPH-PNM----KKKFKDF-KE-----------DNSNIIFVSDNEDIYDLLAAADILIT---- 275 (369)
T ss_dssp HHHHH--HHHTTTEEEEE--S-HHH----HTT-----TT------------TTTEEE-TT-S-HHHHHHT-SEEEE----
T ss_pred HHHHH--HHhCCCcEEEEEeC-chh----hhchhhh-hc-----------cCCcEEECCCCCCHHHHHHhcCEEEE----
Confidence 23333 22346887777665 431 1111110 00 12466666666689999999999654
Q ss_pred CCCCCCCCHHHHHhhCCcEEE-CCCCCChH---HHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 043830 147 LPGLAGHNISEAAAAGCAVLT-GPHIGHYS---NMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 147 ~e~~gg~~~lEA~a~G~Pvi~-~~~~~~~~---~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 222 (248)
+ . .-.+.|++.+++|||. .++...+. +..-...+.. .+..+.+.++|.++|...++++...++-.+.-++.
T Consensus 276 -D-y-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~--pg~~~~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~ 350 (369)
T PF04464_consen 276 -D-Y-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDL--PGPIVYNFEELIEAIENIIENPDEYKEKREKFRDK 350 (369)
T ss_dssp -S-S--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSS--SS-EESSHHHHHHHHTTHHHHHHHTHHHHHHHHHH
T ss_pred -e-c-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhC--CCceeCCHHHHHHHHHhhhhCCHHHHHHHHHHHHH
Confidence 2 1 2347899999999996 33321111 1111111122 23446899999999999888766544333333333
Q ss_pred HHHh-chhHHHHHHHHHH
Q 043830 223 FCAL-SSGIVANVWNLLN 239 (248)
Q Consensus 223 ~~~~-~~~~~~~~l~~~~ 239 (248)
.-.+ ...+++|+++.+.
T Consensus 351 ~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 351 FFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp HSTT--S-HHHHHHHHHH
T ss_pred hCCCCCchHHHHHHHHHh
Confidence 2223 4688888887764
No 112
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.43 E-value=1.6e-07 Score=73.14 Aligned_cols=94 Identities=24% Similarity=0.312 Sum_probs=65.0
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCC----ChHHHHHHHHhcCCceEEEc--C
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIG----HYSNMVSAMQRLNPKSVLQV--S 193 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~----~~~~~~~~~~~~g~g~~~~~--~ 193 (248)
+|.+.++..+|..+|+.||+++. .+ |+.++.|++++|+|+|+-|... .-.+....+.+.|.+..+.. .
T Consensus 56 ~v~~~~~~~~m~~~m~~aDlvIs-----~a-G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~ 129 (167)
T PF04101_consen 56 NVKVFGFVDNMAELMAAADLVIS-----HA-GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESEL 129 (167)
T ss_dssp CCEEECSSSSHHHHHHHHSEEEE-----CS--CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-
T ss_pred cEEEEechhhHHHHHHHcCEEEe-----CC-CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccC
Confidence 45666666689999999999654 33 4568999999999999766554 33345566777776544443 3
Q ss_pred CHHHHHHHHHHhhhCHHHHHHHHHHH
Q 043830 194 GKSELEEALSQLFSDARVLEAQQMAA 219 (248)
Q Consensus 194 ~~~~l~~~i~~ll~~~~~~~~~~~~~ 219 (248)
+++.|.+.|..+++++..+.+|.+++
T Consensus 130 ~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 130 NPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred CHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 46889999999999999887776654
No 113
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.33 E-value=7.7e-06 Score=73.95 Aligned_cols=173 Identities=12% Similarity=0.157 Sum_probs=95.7
Q ss_pred cHHHHHHhcCC-CeEEEEeCCC--cchHHHHHHHHHHHHHhCCC----eEEEEecC--CCCC--HHHHH----HHHHhcC
Q 043830 39 SIEDLKASLAH-RQVWMASSIH--RGEEKVMLAVHKVLMQKNPN----LVTIIVPR--HPQH--GKEIA----QKLQKEG 103 (248)
Q Consensus 39 ~~~~~r~~~~~-~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~----~~lvivG~--~~~~--~~~l~----~~~~~~~ 103 (248)
..+.+++++++ +++++..-+. -|++..=+.||..+.+++|+ +.|+-++- .... ..+++ +++.+.+
T Consensus 264 ~~~~l~~~~~~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN 343 (474)
T PF00982_consen 264 RAEELREKFKGKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRIN 343 (474)
T ss_dssp HHHHHHHHTTT-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHH
Confidence 35678888876 5777765443 37787788999999888886 44444432 1111 12333 3332211
Q ss_pred CceEEecccCCCCCCccEEE-Ec--ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCc----EEECCCCCChHH
Q 043830 104 EVVALRSRHEKLMPRTNVYV-VD--TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCA----VLTGPHIGHYSN 176 (248)
Q Consensus 104 l~~~~~~~~~~~~~~~~v~~-~~--~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~P----vi~~~~~~~~~~ 176 (248)
-. +.+ .....|.+ .. +..++..+|+.||++++ +|+.+|+ -++..|..+|..+ +|.|.-. +
T Consensus 344 ~~---~g~----~~~~PI~~~~~~~~~~~~~aly~~aDv~lv-TslrDGm-NLva~Eyva~q~~~~GvLiLSefa----G 410 (474)
T PF00982_consen 344 GK---YGT----PDWTPIIYIYRSLSFEELLALYRAADVALV-TSLRDGM-NLVAKEYVACQDDNPGVLILSEFA----G 410 (474)
T ss_dssp HH---H-B----TTB-SEEEE-S---HHHHHHHHHH-SEEEE---SSBS---HHHHHHHHHS-TS--EEEEETTB----G
T ss_pred hh---ccc----CCceeEEEEecCCCHHHHHHHHHhhhhEEe-cchhhcc-CCcceEEEEEecCCCCceEeeccC----C
Confidence 11 110 01233544 33 46799999999999877 5666643 2336999999876 4445433 2
Q ss_pred HHHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHh
Q 043830 177 MVSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 177 ~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~ 226 (248)
....+.+ ++ ..+.|-|.+++|++|.+-|+ .++.|+..-+.-++++..+
T Consensus 411 aa~~L~~-~a-l~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~ 459 (474)
T PF00982_consen 411 AAEQLSE-AA-LLVNPWDIEEVADAIHEALTMPPEERKERHARLREYVREH 459 (474)
T ss_dssp GGGT-TT-S--EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCC-cc-EEECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhC
Confidence 3333422 21 67888999999999999998 5556666666666666654
No 114
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.29 E-value=4.1e-05 Score=73.93 Aligned_cols=170 Identities=10% Similarity=0.127 Sum_probs=102.9
Q ss_pred HHHHHHhcC--CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCe----EEEEe--cC---CCCCHHHHH----HHHHhc
Q 043830 40 IEDLKASLA--HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNL----VTIIV--PR---HPQHGKEIA----QKLQKE 102 (248)
Q Consensus 40 ~~~~r~~~~--~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~----~lviv--G~---~~~~~~~l~----~~~~~~ 102 (248)
...++++++ ++.+++..-+. -|++..=+.||..+.+++|++ .||-+ +. .++ .++++ +.+.+.
T Consensus 327 ~~~l~~~~~~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~-y~~~~~ev~~~v~rI 405 (854)
T PLN02205 327 VKELIKQFCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKD-VKEVQAETHSTVKRI 405 (854)
T ss_pred HHHHHHHhccCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHH-HHHHHHHHHHHHHHH
Confidence 456777775 46677655443 377877789999999999976 34433 22 122 23343 333322
Q ss_pred CCceEEecccCCCCCCccEEEEc---ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCc---------------
Q 043830 103 GEVVALRSRHEKLMPRTNVYVVD---TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCA--------------- 164 (248)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~P--------------- 164 (248)
+-.. -..+ ...|.+.. ++.++..+|+.||+++|. ++.+|+ -++..|..+|..+
T Consensus 406 N~~f--g~~~-----~~Pv~~~~~~~~~~e~~aly~~ADv~lVT-~lRDGM-NLva~Eyia~~~~~~~~~~~~~~~~~~~ 476 (854)
T PLN02205 406 NETF--GKPG-----YDPIVLIDAPLKFYERVAYYVVAECCLVT-AVRDGM-NLIPYEYIISRQGNEKLDKLLGLEPSTP 476 (854)
T ss_pred Hhhc--CCCC-----CceEEEEecCCCHHHHHHHHHhccEEEec-cccccc-cccchheeEEccCccccccccccccccC
Confidence 1110 0111 12355443 467999999999998884 565654 4457899998642
Q ss_pred ----EEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC-HHHHHHHHHHHHHHHHHh
Q 043830 165 ----VLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD-ARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 165 ----vi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~ 226 (248)
.|.|.-. +....+ . |+ +.+.|.|.++++++|.+-|+- ++.++..-++-++++..+
T Consensus 477 ~~gvLiLSEfa----Gaa~~L-~-~A-i~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~ 536 (854)
T PLN02205 477 KKSMLVVSEFI----GCSPSL-S-GA-IRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTH 536 (854)
T ss_pred CCCceEeeecc----chhHHh-C-cC-eEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC
Confidence 3344333 333334 2 32 678889999999999999984 445555555556666654
No 115
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.25 E-value=1.1e-05 Score=68.36 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=61.1
Q ss_pred EEEE-eCCCcch-HHHHHHHHHHHHHhCCCeE-EEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 52 VWMA-SSIHRGE-EKVMLAVHKVLMQKNPNLV-TIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 52 v~l~-~~~~~~~-~~~ll~a~~~l~~~~~~~~-lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
+++. ||....+ ...+++++..+. +++. .+|+|.+....+++++.+... .++.+.++..
T Consensus 173 iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~----------------~~i~~~~~~~ 233 (279)
T TIGR03590 173 VLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEY----------------PNIILFIDVE 233 (279)
T ss_pred EEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhC----------------CCEEEEeCHH
Confidence 4444 4444433 346677765532 3333 346677544446777766542 1355666677
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI 171 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~ 171 (248)
+|+++|+.||+++. . +|.++.|++++|+|+|+.+..
T Consensus 234 ~m~~lm~~aDl~Is-----~--~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 234 NMAELMNEADLAIG-----A--AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred HHHHHHHHCCEEEE-----C--CchHHHHHHHcCCCEEEEEec
Confidence 99999999999654 2 468899999999999986544
No 116
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=8.9e-05 Score=66.94 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=96.0
Q ss_pred CCcchHHHHHHHHHHHHHhCCCeEEEEecCCCC--CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHH
Q 043830 58 IHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ--HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQL 133 (248)
Q Consensus 58 ~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~--~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~ 133 (248)
+..|-...+.+-+.++.+.-||-.|+|.|.+++ -...+++++++.|+.. .+..|.++ ..+....
T Consensus 438 n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~------------eRL~f~p~~~~~~h~a~ 505 (620)
T COG3914 438 NYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDS------------ERLRFLPPAPNEDHRAR 505 (620)
T ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCCh------------hheeecCCCCCHHHHHh
Confidence 333434567788888888899999999887543 3467888889999863 23444442 3578899
Q ss_pred HhhCCEEEEcCccCCCCCCCC-HHHHHhhCCcEEECCCCCChHH-HHHHHH-hcCCceEEEcCCHHHHHHHHHHhhhCHH
Q 043830 134 YKLTPIAVIGGSFLPGLAGHN-ISEAAAAGCAVLTGPHIGHYSN-MVSAMQ-RLNPKSVLQVSGKSELEEALSQLFSDAR 210 (248)
Q Consensus 134 y~~ad~~~v~~s~~e~~gg~~-~lEA~a~G~Pvi~~~~~~~~~~-~~~~~~-~~g~g~~~~~~~~~~l~~~i~~ll~~~~ 210 (248)
|..||++ . -+ ++ ++|++ .+||+-+|+||++- .+..|.- ....+. ..|- --..+.|.++-...-..+-+|..
T Consensus 506 ~~iADlv-L-DT-yP-Y~g~TTa~daLwm~vPVlT~-~G~~FasR~~~si~~~agi-~e~vA~s~~dYV~~av~~g~dra 579 (620)
T COG3914 506 YGIADLV-L-DT-YP-YGGHTTASDALWMGVPVLTR-VGEQFASRNGASIATNAGI-PELVADSRADYVEKAVAFGSDRA 579 (620)
T ss_pred hchhhee-e-ec-cc-CCCccchHHHHHhcCceeee-ccHHHHHhhhHHHHHhcCC-chhhcCCHHHHHHHHHHhcccHH
Confidence 9999994 3 22 24 45554 79999999999972 2333432 111222 2221 11234677887777778888888
Q ss_pred HHHHHHHHHHHHHH
Q 043830 211 VLEAQQMAAKQAFC 224 (248)
Q Consensus 211 ~~~~~~~~~~~~~~ 224 (248)
++++.+..-++...
T Consensus 580 l~q~~r~~l~~~r~ 593 (620)
T COG3914 580 LRQQVRAELKRSRQ 593 (620)
T ss_pred HHHhhHHHHHhccc
Confidence 88877665554443
No 117
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.22 E-value=0.0002 Score=63.84 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=79.6
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc--CCHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV--SGKS 196 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~--~~~~ 196 (248)
++++.+.. ....++..||+++. - ||+ ++.||+..|+|+|+-|...+-......+.+.|.|..+.. -+.+
T Consensus 285 n~~v~~~~-p~~~~l~~ad~vI~-----h--GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~ 356 (406)
T COG1819 285 NVIVADYV-PQLELLPRADAVIH-----H--GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEE 356 (406)
T ss_pred ceEEecCC-CHHHHhhhcCEEEe-----c--CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHH
Confidence 44444433 34568999999654 2 455 489999999999997765555455666778888877764 7999
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhh
Q 043830 197 ELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 197 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (248)
.|.++|.++|+|+..++...+..+.... ....++..+.++++...
T Consensus 357 ~l~~av~~vL~~~~~~~~~~~~~~~~~~---~~g~~~~a~~le~~~~~ 401 (406)
T COG1819 357 RLRAAVNEVLADDSYRRAAERLAEEFKE---EDGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhh---cccHHHHHHHHHHHHhc
Confidence 9999999999999887776665554432 23355566666665543
No 118
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.16 E-value=0.00073 Score=61.96 Aligned_cols=116 Identities=13% Similarity=0.058 Sum_probs=76.6
Q ss_pred cEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc--CCH
Q 043830 120 NVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV--SGK 195 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~--~~~ 195 (248)
+|++.+-. --.++++. +++++. -| |..++.||+.+|+|+|+-|..++-......+.+.|.|..+.. -+.
T Consensus 347 Nv~i~~w~-Pq~~lL~hp~v~~fIt-----HG-G~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~ 419 (507)
T PHA03392 347 NVLTQKWF-PQRAVLKHKNVKAFVT-----QG-GVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSA 419 (507)
T ss_pred ceEEecCC-CHHHHhcCCCCCEEEe-----cC-CcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCH
Confidence 45554422 12455744 777543 33 445689999999999998877777777777888887655544 277
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhh
Q 043830 196 SELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVF 243 (248)
Q Consensus 196 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (248)
++|.++|.++++||..++...+-++....+ -....++.+.-++.++.
T Consensus 420 ~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~-p~~~~~~av~~iE~v~r 466 (507)
T PHA03392 420 AQLVLAIVDVIENPKYRKNLKELRHLIRHQ-PMTPLHKAIWYTEHVIR 466 (507)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 999999999999988776666655543321 11355555555555443
No 119
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.08 E-value=0.00011 Score=64.04 Aligned_cols=178 Identities=13% Similarity=0.141 Sum_probs=93.1
Q ss_pred CeEEcCCcccccccCCCCCCcccHHHHHHhcC-CCeEEEEeCCCcchH----HHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 043830 17 TINFSGDLKYVHEYDESEGDIGSIEDLKASLA-HRQVWMASSIHRGEE----KVMLAVHKVLMQKNPNLVTIIVPRHPQH 91 (248)
Q Consensus 17 kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~-~~~v~l~~~~~~~~~----~~ll~a~~~l~~~~~~~~lvivG~~~~~ 91 (248)
+++++|||..|.... . +..+. +..+.+..|.+..++ ..+++++..+.++. .++++.+.. ..
T Consensus 145 ~~~~VGhPl~d~~~~-~----------~~~~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~--~~~~i~~a~-~~ 210 (347)
T PRK14089 145 KATYVGHPLLDEIKE-F----------KKDLDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKE--KILVVPSFF-KG 210 (347)
T ss_pred CCEEECCcHHHhhhh-h----------hhhcCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcC--cEEEEeCCC-cH
Confidence 367899986654210 0 01122 233444544454443 45567877776543 566666553 32
Q ss_pred HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC
Q 043830 92 GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI 171 (248)
Q Consensus 92 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~ 171 (248)
+.+++...+.. .+.+.+ +..++|+.||++++. .|.+.+|++.+|+|+|+....
T Consensus 211 -~~i~~~~~~~~----------------~~~~~~---~~~~~m~~aDlal~~-------SGT~TLE~al~g~P~Vv~Yk~ 263 (347)
T PRK14089 211 -KDLKEIYGDIS----------------EFEISY---DTHKALLEAEFAFIC-------SGTATLEAALIGTPFVLAYKA 263 (347)
T ss_pred -HHHHHHHhcCC----------------CcEEec---cHHHHHHhhhHHHhc-------CcHHHHHHHHhCCCEEEEEeC
Confidence 45555443211 112223 457889999997652 266678999999999996655
Q ss_pred CChHH-HHHHHHh---cCCce----------E----E-EcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHH
Q 043830 172 GHYSN-MVSAMQR---LNPKS----------V----L-QVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVA 232 (248)
Q Consensus 172 ~~~~~-~~~~~~~---~g~g~----------~----~-~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (248)
+.+.. +...+.+ -|... + + .--+++.|++.+... +.+...++....++.. ..++++
T Consensus 264 ~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~--~~~~~~~~~~~l~~~l---~~~a~~ 338 (347)
T PRK14089 264 KAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEM--DREKFFKKSKELREYL---KHGSAK 338 (347)
T ss_pred CHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHH--HHHHHHHHHHHHHHHh---cCCHHH
Confidence 44543 2233321 00000 0 1 114688998888772 2222222223223322 246666
Q ss_pred HHHHHHHH
Q 043830 233 NVWNLLNF 240 (248)
Q Consensus 233 ~~l~~~~~ 240 (248)
+..+.+.+
T Consensus 339 ~~A~~i~~ 346 (347)
T PRK14089 339 NVAKILKE 346 (347)
T ss_pred HHHHHHhc
Confidence 66665543
No 120
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=97.92 E-value=0.00045 Score=64.39 Aligned_cols=175 Identities=11% Similarity=0.013 Sum_probs=106.2
Q ss_pred CCeEEEEeCCC--cchHHHHHHHHHHHHH--hC--CCeEEEEecCCCCC---HHHHHHHHHhcCCceEEecccCCCCCCc
Q 043830 49 HRQVWMASSIH--RGEEKVMLAVHKVLMQ--KN--PNLVTIIVPRHPQH---GKEIAQKLQKEGEVVALRSRHEKLMPRT 119 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~ll~a~~~l~~--~~--~~~~lvivG~~~~~---~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 119 (248)
+.+++.++++. .|+.+.+++++..+.+ .+ .+++||+.|.+... ..++.+.+..+.-.. . .+ .
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~--~------~~-~ 458 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRP--E------FR-G 458 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcc--c------CC-C
Confidence 34455556543 4777788888887764 22 35899999975332 123333333321110 0 01 2
Q ss_pred cEEE-EcChhHH-HHHHhhCCEEEEcCcc-CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEE-----
Q 043830 120 NVYV-VDTLGEL-RQLYKLTPIAVIGGSF-LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQ----- 191 (248)
Q Consensus 120 ~v~~-~~~~~~l-~~~y~~ad~~~v~~s~-~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~----- 191 (248)
+|.| .++-..+ ..+|+.||+.+..||. .|. .|.+=+=||..|.+.+++-++ -+.|.. +.++|+.+.
T Consensus 459 kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~Ea-cGtsqMka~~nGgL~~sv~DG-~~~E~~----~~~nGf~f~~~~~~ 532 (601)
T TIGR02094 459 RIVFLENYDINLARYLVSGVDVWLNNPRRPLEA-SGTSGMKAAMNGVLNLSILDG-WWGEGY----DGDNGWAIGDGEEY 532 (601)
T ss_pred CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCC-chHHHHHHHHcCCceeecccC-cccccC----CCCcEEEECCCccc
Confidence 4554 4543344 6789999997665887 776 588889999999999976543 222222 346678887
Q ss_pred -------cCCHHHHHHHHHHhh-----hC-----HHHHHHHHHHHHHHH-HHh-chhHHHHHHHHH
Q 043830 192 -------VSGKSELEEALSQLF-----SD-----ARVLEAQQMAAKQAF-CAL-SSGIVANVWNLL 238 (248)
Q Consensus 192 -------~~~~~~l~~~i~~ll-----~~-----~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~ 238 (248)
-.|+++|.++|.+-+ ++ |....+|.++|-+.. ..+ |..+++++.+.|
T Consensus 533 ~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 533 DDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 378999999886544 22 334555555543322 135 788888887765
No 121
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=0.00031 Score=58.35 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=85.1
Q ss_pred EEEE-eCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHH
Q 043830 52 VWMA-SSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGEL 130 (248)
Q Consensus 52 v~l~-~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l 130 (248)
+++. ||+.+++ ..++.+..+.+..-++. +++|+.......+.+.+.+. .++-+.-..++|
T Consensus 161 ilI~lGGsDpk~--lt~kvl~~L~~~~~nl~-iV~gs~~p~l~~l~k~~~~~----------------~~i~~~~~~~dm 221 (318)
T COG3980 161 ILITLGGSDPKN--LTLKVLAELEQKNVNLH-IVVGSSNPTLKNLRKRAEKY----------------PNINLYIDTNDM 221 (318)
T ss_pred EEEEccCCChhh--hHHHHHHHhhccCeeEE-EEecCCCcchhHHHHHHhhC----------------CCeeeEecchhH
Confidence 5543 5555665 45666666666544665 45575544336666665543 123333334589
Q ss_pred HHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc---CCHHHHHHHHHHhhh
Q 043830 131 RQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV---SGKSELEEALSQLFS 207 (248)
Q Consensus 131 ~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~---~~~~~l~~~i~~ll~ 207 (248)
+.+|..||.+++. +|.++.||+..|+|.++-+...|-.-....+...| ..... -..+.....+.++.+
T Consensus 222 a~LMke~d~aI~A-------aGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg--~~~~l~~~l~~~~~~~~~~~i~~ 292 (318)
T COG3980 222 AELMKEADLAISA-------AGSTLYEALLLGVPSLVLPLAENQIATAKEFEALG--IIKQLGYHLKDLAKDYEILQIQK 292 (318)
T ss_pred HHHHHhcchheec-------cchHHHHHHHhcCCceEEeeeccHHHHHHHHHhcC--chhhccCCCchHHHHHHHHHhhh
Confidence 9999999998752 58999999999999443222222222233344333 22222 355677777888899
Q ss_pred CHHHHHHHHHHHHH
Q 043830 208 DARVLEAQQMAAKQ 221 (248)
Q Consensus 208 ~~~~~~~~~~~~~~ 221 (248)
|+.+|+.+...++.
T Consensus 293 d~~~rk~l~~~~~~ 306 (318)
T COG3980 293 DYARRKNLSFGSKL 306 (318)
T ss_pred CHHHhhhhhhccce
Confidence 99988777665443
No 122
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.0011 Score=59.72 Aligned_cols=170 Identities=13% Similarity=0.168 Sum_probs=100.0
Q ss_pred HHHHHHhcCC-CeEEEEeCCC--cchHHHHHHHHHHHHHhCCCe----EEEEecC-CCCCHH---HHH----HHHHhcCC
Q 043830 40 IEDLKASLAH-RQVWMASSIH--RGEEKVMLAVHKVLMQKNPNL----VTIIVPR-HPQHGK---EIA----QKLQKEGE 104 (248)
Q Consensus 40 ~~~~r~~~~~-~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~----~lvivG~-~~~~~~---~l~----~~~~~~~l 104 (248)
..++++.+.+ +.+++..-+. -|++..=+.||..+...+|++ .++-+.. .-...+ .+. +++.+.+=
T Consensus 271 ~~el~~~~~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~ 350 (486)
T COG0380 271 VLELKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRING 350 (486)
T ss_pred HHHHHHHhcCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHh
Confidence 4566767664 6666654332 266667788999998888864 3333332 111111 222 22222111
Q ss_pred ceEEecccCCCCCCccEEEEc---ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCC----cEEECCCCCChHHH
Q 043830 105 VVALRSRHEKLMPRTNVYVVD---TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGC----AVLTGPHIGHYSNM 177 (248)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~----Pvi~~~~~~~~~~~ 177 (248)
. + |.. ..+.|++.. .+.++..+|+.||+++| +|+.+|+ -++..|..||.- |.|.+.-.| .
T Consensus 351 ~---f--G~~--~~~Pv~~l~~~~~~~~l~al~~~aDv~lV-tplrDGM-NLvakEyVa~q~~~~G~LiLSeFaG----a 417 (486)
T COG0380 351 E---F--GSL--SWTPVHYLHRDLDRNELLALYRAADVMLV-TPLRDGM-NLVAKEYVAAQRDKPGVLILSEFAG----A 417 (486)
T ss_pred h---c--CCC--CcceeEEEeccCCHHHHHHHHhhhceeee-ccccccc-cHHHHHHHHhhcCCCCcEEEecccc----c
Confidence 1 1 111 123455554 46789999999999887 4666654 344589888855 556664443 3
Q ss_pred HHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHH
Q 043830 178 VSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 178 ~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~ 225 (248)
...+.+ . +++.|.|.++++++|.+-|+ .++.+++.-+.-++.+..
T Consensus 418 a~~L~~-A--liVNP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~ 463 (486)
T COG0380 418 ASELRD-A--LIVNPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLT 463 (486)
T ss_pred hhhhcc-C--EeECCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 334432 2 77888999999999999998 455555544444555544
No 123
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.83 E-value=0.00043 Score=59.32 Aligned_cols=80 Identities=25% Similarity=0.253 Sum_probs=54.0
Q ss_pred ccEEEEcCh-hHHHHHHhhCCEEEEcCccCCCCCCCC-HHHHHhhCCcEEECCCCC--ChHHHHHHHHhcCCceEEEc--
Q 043830 119 TNVYVVDTL-GELRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAAAGCAVLTGPHIG--HYSNMVSAMQRLNPKSVLQV-- 192 (248)
Q Consensus 119 ~~v~~~~~~-~~l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a~G~Pvi~~~~~~--~~~~~~~~~~~~g~g~~~~~-- 192 (248)
.+|.+.... .++.++|+.||+++. . +|.+ +.|++++|+|+|+-|..+ +-......+.+.|.|..+..
T Consensus 232 ~ni~~~~~~~~~~~~~m~~ad~vIs-----~--~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~ 304 (318)
T PF13528_consen 232 GNIHVRPFSTPDFAELMAAADLVIS-----K--GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQED 304 (318)
T ss_pred CCEEEeecChHHHHHHHHhCCEEEE-----C--CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEccccc
Confidence 345555533 689999999999654 2 4666 899999999999876532 22224556777775444333
Q ss_pred CCHHHHHHHHHHh
Q 043830 193 SGKSELEEALSQL 205 (248)
Q Consensus 193 ~~~~~l~~~i~~l 205 (248)
-+++.|.++|.+|
T Consensus 305 ~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 305 LTPERLAEFLERL 317 (318)
T ss_pred CCHHHHHHHHhcC
Confidence 2778888888654
No 124
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.76 E-value=6.5e-05 Score=68.64 Aligned_cols=112 Identities=11% Similarity=0.019 Sum_probs=67.4
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHH-HHh-cCCceEEEc---CCHHH----HH
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSA-MQR-LNPKSVLQV---SGKSE----LE 199 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~-~~~-~g~g~~~~~---~~~~~----l~ 199 (248)
+..+++..+|+. |+||++|+ ||-+++|+.++|+|.|+++- .+|...... +.+ ...|..+.- .+.++ |+
T Consensus 462 ~Y~dfv~GcdLg-vFPSYYEP-WGYTPlE~~a~gVPsITTnL-sGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la 538 (633)
T PF05693_consen 462 DYYDFVRGCDLG-VFPSYYEP-WGYTPLECTAFGVPSITTNL-SGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLA 538 (633)
T ss_dssp -HHHHHHHSSEE-EE--SSBS-S-HHHHHHHHTT--EEEETT-BHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHH
T ss_pred CHHHHhccCcee-eecccccc-ccCChHHHhhcCCceeeccc-hhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHH
Confidence 668889999997 57999997 79999999999999998754 466533322 111 112343332 35544 44
Q ss_pred HHHHHhhh-CHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhh
Q 043830 200 EALSQLFS-DARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 200 ~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 243 (248)
+.|..+.. +...|..+++++.+..... |......+.+.|...|.
T Consensus 539 ~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 539 DFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44444444 5667777777777665555 77777777777776554
No 125
>PLN00164 glucosyltransferase; Provisional
Probab=97.63 E-value=0.0076 Score=54.98 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=67.4
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh-cCCceEEEc-------CCHHHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR-LNPKSVLQV-------SGKSELEEA 201 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~-~g~g~~~~~-------~~~~~l~~~ 201 (248)
..++++.++ +|+ + -+ |-.+++||+++|+|+|+-|..++-......+.+ -|.|..+.. -+.+++.++
T Consensus 350 ~~iL~h~~vg~fv--t--H~-GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~a 424 (480)
T PLN00164 350 KEILAHAAVGGFV--T--HC-GWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERA 424 (480)
T ss_pred HHHhcCcccCeEE--e--ec-ccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHH
Confidence 456777764 344 1 22 345699999999999996654444333433433 354444421 267999999
Q ss_pred HHHhhhCHH-HHHHHHHHHHHHHHHh-----chhHHHHHHHHHHHHhhhhh
Q 043830 202 LSQLFSDAR-VLEAQQMAAKQAFCAL-----SSGIVANVWNLLNFHVFRRA 246 (248)
Q Consensus 202 i~~ll~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 246 (248)
|.+++.+++ ..+.|+++++++.... ..+++.+.++.+-+-+..|+
T Consensus 425 v~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 425 VRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 999998754 3556666665544322 14566666666655555443
No 126
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.58 E-value=0.047 Score=49.02 Aligned_cols=185 Identities=10% Similarity=0.089 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcc-cHHHHHHhcCCCeEE-EEeCCCc----------ch-HHHHHHH
Q 043830 3 LQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIG-SIEDLKASLAHRQVW-MASSIHR----------GE-EKVMLAV 69 (248)
Q Consensus 3 ~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~-~~~~~r~~~~~~~v~-l~~~~~~----------~~-~~~ll~a 69 (248)
..++.|.++|++..+|.+++++.|-......+..+. ....+....+.++++ +..+.+. .+ ...+.++
T Consensus 186 ~S~~~Lk~lGv~~~~v~~~aDpAF~L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~ 265 (426)
T PRK10017 186 VSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGV 265 (426)
T ss_pred HHHHHHHHhCCCccceEEecChhhhCCccccccccchhhhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHH
Confidence 456788889999889999987765433211000000 011222222333443 3333222 11 2355566
Q ss_pred HHHHHHhCCCeEEEEecCC-------CCCHHHHHHHHHhcCCceEEecccCCCCCCccEE-EEc--ChhHHHHHHhhCCE
Q 043830 70 HKVLMQKNPNLVTIIVPRH-------PQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVY-VVD--TLGELRQLYKLTPI 139 (248)
Q Consensus 70 ~~~l~~~~~~~~lvivG~~-------~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~--~~~~l~~~y~~ad~ 139 (248)
+..+..+ +..+++++.+ ++......+....+.-+ .++. +.+ +..++..+++.+|+
T Consensus 266 i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~-------------~~~~vi~~~~~~~e~~~iIs~~dl 330 (426)
T PRK10017 266 VNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDP-------------ARYHVVMDELNDLEMGKILGACEL 330 (426)
T ss_pred HHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccc-------------cceeEecCCCChHHHHHHHhhCCE
Confidence 6666554 4556666643 22111122322332211 1111 222 12477799999999
Q ss_pred EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCc-eEEEcC--CHHHHHHHHHHhhhCHHHH
Q 043830 140 AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPK-SVLQVS--GKSELEEALSQLFSDARVL 212 (248)
Q Consensus 140 ~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g-~~~~~~--~~~~l~~~i~~ll~~~~~~ 212 (248)
+++.- -|..+=|++.|+|+|.-.-..-+.+. +..-|.. ++...+ +.++|.+.+.++++|.+..
T Consensus 331 -~ig~R------lHa~I~a~~~gvP~i~i~Y~~K~~~~---~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~ 396 (426)
T PRK10017 331 -TVGTR------LHSAIISMNFGTPAIAINYEHKSAGI---MQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPAL 396 (426)
T ss_pred -EEEec------chHHHHHHHcCCCEEEeeehHHHHHH---HHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHH
Confidence 45421 37789999999999963211122222 3222221 334443 5788999999999986543
No 127
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.55 E-value=0.0072 Score=52.40 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=46.7
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
+...++..||++ ++ + ||.-..||+.+|+|.|.... +....+-+.+.+.| +.....|++++.+.+.+.+
T Consensus 241 d~~~Ll~~a~l~-Ig----~--ggTMa~EAA~LGtPaIs~~~-g~~~~vd~~L~~~G--ll~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 241 DGLDLLYYADLV-IG----G--GGTMAREAALLGTPAISCFP-GKLLAVDKYLIEKG--LLYHSTDPDEIVEYVRKNL 308 (335)
T ss_pred CHHHHHHhcCEE-Ee----C--CcHHHHHHHHhCCCEEEecC-CcchhHHHHHHHCC--CeEecCCHHHHHHHHHHhh
Confidence 445789999994 54 2 34446999999999996432 22222334566665 7888999999988665544
No 128
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.54 E-value=0.0023 Score=55.20 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=53.4
Q ss_pred cEEEEcCh-hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCCh--HHHHHHHHhcCCceEEEcCCHH
Q 043830 120 NVYVVDTL-GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHY--SNMVSAMQRLNPKSVLQVSGKS 196 (248)
Q Consensus 120 ~v~~~~~~-~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~--~~~~~~~~~~g~g~~~~~~~~~ 196 (248)
++.+.+.. .++..+|..||+++. .+ |..++.||+++|+|+|+.|..+.. ......+.+.|.|..+...+.
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad~vI~-----~~-G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~- 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAELVIT-----HG-GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL- 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCCEEEE-----CC-ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-
Confidence 44444433 489999999999654 22 335689999999999997754322 234556777776555544555
Q ss_pred HHHHHHHHhhhCH
Q 043830 197 ELEEALSQLFSDA 209 (248)
Q Consensus 197 ~l~~~i~~ll~~~ 209 (248)
++.+++...+.|+
T Consensus 303 ~~~~~~~~~~~~~ 315 (321)
T TIGR00661 303 RLLEAILDIRNMK 315 (321)
T ss_pred HHHHHHHhccccc
Confidence 5555555555443
No 129
>PLN02764 glycosyltransferase family protein
Probab=97.52 E-value=0.012 Score=53.27 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=51.5
Q ss_pred CCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc-------CCHHHHHHHHHHhhhCH-HHHHHHHHHHHHH
Q 043830 151 AGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV-------SGKSELEEALSQLFSDA-RVLEAQQMAAKQA 222 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~-------~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~ 222 (248)
|-.+++||+++|+|+|+-|...+.......+.+ +.|.++.. -+.+++.+++.++++++ +..++++++++++
T Consensus 344 G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~-~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~ 422 (453)
T PLN02764 344 GFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSD-ELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKW 422 (453)
T ss_pred CchHHHHHHHcCCCEEeCCcccchHHHHHHHHH-HhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 345689999999999998766555555555543 22344432 27899999999999875 5566677776665
Q ss_pred HHH
Q 043830 223 FCA 225 (248)
Q Consensus 223 ~~~ 225 (248)
.+.
T Consensus 423 ~~~ 425 (453)
T PLN02764 423 RET 425 (453)
T ss_pred HHH
Confidence 433
No 130
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.52 E-value=0.0012 Score=59.88 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=65.2
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEEc-------CCHHHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQV-------SGKSELEEA 201 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~~-------~~~~~l~~~ 201 (248)
.++++..++ +|+. -+ |-.+++||+++|+|+|+-|..++-......+.+. |.|..+.. -+.+++.++
T Consensus 334 ~~iL~h~~v~~fvt----Hg-G~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~a 408 (459)
T PLN02448 334 LKVLCHSSVGGFWT----HC-GWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAEL 408 (459)
T ss_pred HHHhccCccceEEe----cC-chhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHH
Confidence 456777776 3442 22 3456999999999999977655555555556553 55566542 378999999
Q ss_pred HHHhhhCH-HHHHHHHHHHHHHHHHh-----chhHHHHHHHHHH
Q 043830 202 LSQLFSDA-RVLEAQQMAAKQAFCAL-----SSGIVANVWNLLN 239 (248)
Q Consensus 202 i~~ll~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~ 239 (248)
+.+++.++ +..+.|+++++++.+.. ..+.+.+.++.+-
T Consensus 409 v~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v 452 (459)
T PLN02448 409 VKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFI 452 (459)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999874 44455555555443221 1354555554443
No 131
>PLN02670 transferase, transferring glycosyl groups
Probab=97.39 E-value=0.0012 Score=59.85 Aligned_cols=108 Identities=10% Similarity=0.055 Sum_probs=64.3
Q ss_pred HHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc------CCHHHHHHHHHH
Q 043830 132 QLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV------SGKSELEEALSQ 204 (248)
Q Consensus 132 ~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~------~~~~~l~~~i~~ 204 (248)
+++++..+ +|+ | -+ |-++++||+++|+|+|+-|..++-......+.+.|.|..+.. -+.+++.++|.+
T Consensus 351 ~IL~H~~v~~Fv--t--Hc-GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~ 425 (472)
T PLN02670 351 KILSHESVGGFL--T--HC-GWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRL 425 (472)
T ss_pred HHhcCcccceee--e--cC-CcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHH
Confidence 45666655 133 1 22 345699999999999997654444444455555665544432 258999999999
Q ss_pred hhhCHHHHHHHHHHHHHHHHHh-c----hhHHHHHHHHHHHHhhhh
Q 043830 205 LFSDARVLEAQQMAAKQAFCAL-S----SGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 205 ll~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~ 245 (248)
++.+++ -+++++++++..... . ..+++.+.+.+.+...+|
T Consensus 426 vm~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 470 (472)
T PLN02670 426 AMVDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENRSSR 470 (472)
T ss_pred HhcCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhcccc
Confidence 998752 234455555544333 2 355555555555554444
No 132
>PLN02562 UDP-glycosyltransferase
Probab=97.37 E-value=0.0028 Score=57.27 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=62.6
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEEcCCHHHHHHHHHHhhhC
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
..+++..++ +|+. -+ |-.+++||+++|+|+|+-|..++-......+.+. |.|..+.--+.+++++++.+++.|
T Consensus 339 ~~iL~h~~v~~fvt----H~-G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~ 413 (448)
T PLN02562 339 LEVLKHQAVGCYLT----HC-GWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMED 413 (448)
T ss_pred HHHhCCCccceEEe----cC-cchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCC
Confidence 455777664 3441 22 3456899999999999977655555555555432 533333225889999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 043830 209 ARVLEAQQMAAKQAFCALSSGIVANVWNLLNF 240 (248)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (248)
++.++...+.+.+.......+++.+.++.+-+
T Consensus 414 ~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~ 445 (448)
T PLN02562 414 SGMGERLMKLRERAMGEEARLRSMMNFTTLKD 445 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 77665544433332221112455555554433
No 133
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.35 E-value=0.012 Score=56.34 Aligned_cols=173 Identities=13% Similarity=0.044 Sum_probs=99.8
Q ss_pred eEEEEeCCC--cchHHHHHHHHHHHHHh--C--CCeEEEEecCC-CCCH--HHHHHHHHhcCCceEEecccCCCCCCccE
Q 043830 51 QVWMASSIH--RGEEKVMLAVHKVLMQK--N--PNLVTIIVPRH-PQHG--KEIAQKLQKEGEVVALRSRHEKLMPRTNV 121 (248)
Q Consensus 51 ~v~l~~~~~--~~~~~~ll~a~~~l~~~--~--~~~~lvivG~~-~~~~--~~l~~~~~~~~l~~~~~~~~~~~~~~~~v 121 (248)
+++.++++. .|....+++.+..+.+- . .+++||++|.+ |... .++.+.+.++.-.. .+ ..+|
T Consensus 479 ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p--~~-------~~kV 549 (778)
T cd04299 479 LTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRP--EF-------RGRI 549 (778)
T ss_pred cEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCc--CC-------CCcE
Confidence 455555543 46677788887776441 1 35899999964 4331 33444443321100 00 1245
Q ss_pred EE-EcChhHH-HHHHhhCCEEEEcCcc--CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc-----
Q 043830 122 YV-VDTLGEL-RQLYKLTPIAVIGGSF--LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV----- 192 (248)
Q Consensus 122 ~~-~~~~~~l-~~~y~~ad~~~v~~s~--~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~----- 192 (248)
.| .|+--.+ ..+++.||+ +..+|. .|. .|.+=+=||.-|.+-+.+-++ -+.|.+ +.++|+.+..
T Consensus 550 vfle~Yd~~lA~~LvaG~Dv-wLn~prrp~EA-sGTSgMKA~~NG~LnlSvlDG-ww~E~~----~g~nGwaig~~~~~~ 622 (778)
T cd04299 550 VFLEDYDMALARHLVQGVDV-WLNTPRRPLEA-SGTSGMKAALNGGLNLSVLDG-WWDEGY----DGENGWAIGDGDEYE 622 (778)
T ss_pred EEEcCCCHHHHHHHHhhhhh-cccCCCCCCCC-CccchHHHHHcCCeeeecccC-cccccc----CCCCceEeCCCcccc
Confidence 54 4543344 677999999 566777 565 477778999999999976543 333333 3455688766
Q ss_pred -------CCHHHHHHHHHH-hh---hC------HHHHHHHHHHHHHHH-HHh-chhHHHHHHHHHH
Q 043830 193 -------SGKSELEEALSQ-LF---SD------ARVLEAQQMAAKQAF-CAL-SSGIVANVWNLLN 239 (248)
Q Consensus 193 -------~~~~~l~~~i~~-ll---~~------~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~ 239 (248)
.|+++|.+.++. ++ -+ |..-.+|.+++-+.+ ..| +..|++++++.+-
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 467777777753 33 12 444445544443332 234 5777777766543
No 134
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.22 E-value=0.052 Score=49.62 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=45.8
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh-cCCceEEE----------cCCHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR-LNPKSVLQ----------VSGKSEL 198 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~-~g~g~~~~----------~~~~~~l 198 (248)
..+++.+++ +|+. -+ |-++++||+++|+|+|+-|..++-......+.+ -+.|+.+. .-+.+++
T Consensus 356 ~~iL~h~~v~~fvt----H~-G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l 430 (482)
T PLN03007 356 VLILDHQATGGFVT----HC-GWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKV 430 (482)
T ss_pred HHHhccCccceeee----cC-cchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHH
Confidence 456788765 2441 22 345689999999999996654333333332221 12234431 1378999
Q ss_pred HHHHHHhhhCH
Q 043830 199 EEALSQLFSDA 209 (248)
Q Consensus 199 ~~~i~~ll~~~ 209 (248)
.+++.+++.++
T Consensus 431 ~~av~~~m~~~ 441 (482)
T PLN03007 431 EKAVREVIVGE 441 (482)
T ss_pred HHHHHHHhcCc
Confidence 99999999886
No 135
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0031 Score=53.03 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=114.9
Q ss_pred HHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEE--EeCCCc---chHHHHHHHHHHHHHhCC
Q 043830 4 QAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWM--ASSIHR---GEEKVMLAVHKVLMQKNP 78 (248)
Q Consensus 4 ~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l--~~~~~~---~~~~~ll~a~~~l~~~~~ 78 (248)
+.+.|...||+ +.-+||+..|...++. .+ .++ .+.+.+++. -+|+-+ .+...++.++-.+.....
T Consensus 189 Taq~L~~rgvn---a~~vGnpmmD~L~p~~-~~----~q~--l~~g~~viaLLPGsR~pea~~nl~~il~slcal~~~~a 258 (412)
T COG4370 189 TAQHLANRGVN---AAYVGNPMMDGLPPPE-RD----PQL--LLTGVPVIALLPGSRVPEAQTNLAVILGSLCALPAMFA 258 (412)
T ss_pred cHHHHHhcCCc---hhhccChhhccCCCcc-CC----chh--hccCCceEEecCCCCChHHHhhHHHHHHHHhhhHHHHH
Confidence 45667778887 5678998877754321 11 111 123455543 345422 234566665444433333
Q ss_pred CeEEE--EecCCCCCHHHHHHHHHhcCCceEEe-cccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTI--IVPRHPQHGKEIAQKLQKEGEVVALR-SRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lv--ivG~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
++.|+ |++.-+ ..-+..+.+..|....-. +. . .+..+++. .....+++..||+++ ++.|...
T Consensus 259 ~vvfw~ai~~~lp--l~~l~~l~e~~gWq~~ad~~~--k--dnc~l~ls--qqsfadiLH~adaal-------gmAGTAt 323 (412)
T COG4370 259 LVVFWAAIAPELP--LLLLWTLEERQGWQPLADRFG--K--DNCSLWLS--QQSFADILHAADAAL-------GMAGTAT 323 (412)
T ss_pred HHHHHhccCcCCC--HHHHHHHHHhcCcchhhhhhc--c--CceEEEEe--HHHHHHHHHHHHHHH-------HhccchH
Confidence 32222 222222 134555555555542111 11 0 12234443 345667788888743 2346667
Q ss_pred HHHHhhCCcEEEC----CC-CCChHHHHHHHHhcCCceEEEcCCHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHhchh
Q 043830 156 SEAAAAGCAVLTG----PH-IGHYSNMVSAMQRLNPKSVLQVSGKSELEEALS-QLFSDARVLEAQQMAAKQAFCALSSG 229 (248)
Q Consensus 156 lEA~a~G~Pvi~~----~~-~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~-~ll~~~~~~~~~~~~~~~~~~~~~~~ 229 (248)
-.+.-.|+|||.- |. ..+|.+.-..+. |. .+..++...+-+..+. ++|.|++..+..++++++++-+ .+
T Consensus 324 EQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLL--G~-sltlv~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq--aG 398 (412)
T COG4370 324 EQAVGLGKPVIGFPGQGPQYNPGFAERQQRLL--GA-SLTLVRPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ--AG 398 (412)
T ss_pred HHhhccCCceeecCCCCCCcChHHHHHHHHHh--cc-eeeecCCchhhHHHHHHHHhcChHHHHHHHhcchhhccC--cc
Confidence 7889999999973 32 235555444443 32 2344444444444454 4999999999999999998743 78
Q ss_pred HHHHHHHHHHHH
Q 043830 230 IVANVWNLLNFH 241 (248)
Q Consensus 230 ~~~~~l~~~~~~ 241 (248)
++.++.+.+.+.
T Consensus 399 aa~rIAe~l~e~ 410 (412)
T COG4370 399 AARRIAEELGEM 410 (412)
T ss_pred hHHHHHHHHHHh
Confidence 888888877653
No 136
>PLN00414 glycosyltransferase family protein
Probab=97.19 E-value=0.06 Score=48.68 Aligned_cols=91 Identities=10% Similarity=0.143 Sum_probs=59.3
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHH-hcCCceEEEc-----CCHHHHHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ-RLNPKSVLQV-----SGKSELEEALS 203 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~-~~g~g~~~~~-----~~~~~l~~~i~ 203 (248)
..+++...+ +|+. -+ |-.+++||+++|+|+|+-|...+.......+. .-|.|..+.. -+.+++.+++.
T Consensus 323 ~~vL~h~~v~~fvt----H~-G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 323 PLILSHPSVGCFVN----HC-GFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred HHHhcCCccceEEe----cC-chhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 345766633 1341 22 34669999999999999776555544555553 2354443321 38899999999
Q ss_pred HhhhCH-HHHHHHHHHHHHHHHHh
Q 043830 204 QLFSDA-RVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 204 ~ll~~~-~~~~~~~~~~~~~~~~~ 226 (248)
+++.++ +..++++++++++.+..
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~~~~~ 421 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKLKETL 421 (446)
T ss_pred HHhcCChhhHHHHHHHHHHHHHHH
Confidence 999865 56677777777665444
No 137
>PLN02208 glycosyltransferase family protein
Probab=97.19 E-value=0.0034 Score=56.60 Aligned_cols=101 Identities=13% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHhhCCE-EEEcCccCCCCCC-CCHHHHHhhCCcEEECCCCCChHHHHHHHHh-cCCceEEEc-----CCHHHHHHHHH
Q 043830 132 QLYKLTPI-AVIGGSFLPGLAG-HNISEAAAAGCAVLTGPHIGHYSNMVSAMQR-LNPKSVLQV-----SGKSELEEALS 203 (248)
Q Consensus 132 ~~y~~ad~-~~v~~s~~e~~gg-~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~-~g~g~~~~~-----~~~~~l~~~i~ 203 (248)
+++++..+ +|+ | - +| ++++||+++|+|+|+-|..++-......+.+ -|.|..+.. -+.+++.++|.
T Consensus 323 ~iL~H~~v~~Fv--t--H--cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~ 396 (442)
T PLN02208 323 LILDHPSIGCFV--N--H--CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIK 396 (442)
T ss_pred HHhcCCccCeEE--c--c--CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHH
Confidence 45777765 344 2 2 34 4589999999999997754443333343333 353333321 27899999999
Q ss_pred HhhhCH-HHHHHHHHHHHHHHHHh-chhHHHHHHHHH
Q 043830 204 QLFSDA-RVLEAQQMAAKQAFCAL-SSGIVANVWNLL 238 (248)
Q Consensus 204 ~ll~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 238 (248)
++++++ +..++++++++++.+.. ..+...+.++.+
T Consensus 397 ~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~ 433 (442)
T PLN02208 397 SVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKF 433 (442)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999876 56677777777654433 233344333333
No 138
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.11 E-value=0.084 Score=48.17 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=46.7
Q ss_pred HHHHhhC--CEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh-cCCceEEE-----cCCHHHHHHHH
Q 043830 131 RQLYKLT--PIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR-LNPKSVLQ-----VSGKSELEEAL 202 (248)
Q Consensus 131 ~~~y~~a--d~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~-~g~g~~~~-----~~~~~~l~~~i 202 (248)
..+++.. ++ |+. -+ |-.+++||+++|+|+|+-|...+.......+.+ -|.|..+. .-+.+++.+++
T Consensus 354 ~~vL~h~~v~~-fvt----H~-G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v 427 (477)
T PLN02863 354 VAILSHRAVGA-FLT----HC-GWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVF 427 (477)
T ss_pred HHHhcCCCcCe-EEe----cC-CchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHH
Confidence 4567763 34 441 32 345699999999999997655444444444433 25444331 13688999999
Q ss_pred HHhh-hCHHHH
Q 043830 203 SQLF-SDARVL 212 (248)
Q Consensus 203 ~~ll-~~~~~~ 212 (248)
.+++ ++++.+
T Consensus 428 ~~~m~~~~~~r 438 (477)
T PLN02863 428 MESVSENQVER 438 (477)
T ss_pred HHHhhccHHHH
Confidence 9988 344433
No 139
>PLN02210 UDP-glucosyl transferase
Probab=97.07 E-value=0.0082 Score=54.40 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHhhCC--EEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh-cCCceEEEc------CCHHHHHHH
Q 043830 131 RQLYKLTP--IAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR-LNPKSVLQV------SGKSELEEA 201 (248)
Q Consensus 131 ~~~y~~ad--~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~-~g~g~~~~~------~~~~~l~~~ 201 (248)
.++++.+. . |+. -+ |-.+++||+++|+|+|+-|..++-......+.+ -|.|..+.. -+.++++++
T Consensus 335 ~~iL~h~~vg~-Fit----H~-G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~a 408 (456)
T PLN02210 335 EKILSHMAISC-FVT----HC-GWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERC 408 (456)
T ss_pred HHHhcCcCcCe-EEe----eC-CcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHH
Confidence 35677776 4 331 22 235689999999999997765554445555554 465544431 378999999
Q ss_pred HHHhhhCHH------HHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 043830 202 LSQLFSDAR------VLEAQQMAAKQAFCALSSGIVANVWNLL 238 (248)
Q Consensus 202 i~~ll~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (248)
+.+++.+++ ..++|++.+++.+.+ .+++.+.++.+
T Consensus 409 v~~~m~~~~g~~~r~~a~~l~~~a~~Av~~--gGSS~~~l~~~ 449 (456)
T PLN02210 409 IEAVTEGPAAADIRRRAAELKHVARLALAP--GGSSARNLDLF 449 (456)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 999998754 223344444444332 35454444433
No 140
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.006 Score=52.80 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=67.6
Q ss_pred hHHHHHHhhCCEEEEcCc--cCCCCC--CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHH
Q 043830 128 GELRQLYKLTPIAVIGGS--FLPGLA--GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALS 203 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~~s--~~e~~g--g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~ 203 (248)
+.++..++.-|+.+..++ +.++.+ .+-+.|+|+||.|.++.. .+++-..+.+ |. ..+...|..++.+.+.
T Consensus 249 ~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~----~~~~e~~f~p-gk-~~iv~~d~kdl~~~~~ 322 (373)
T COG4641 249 DGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDY----WKDLEKFFKP-GK-DIIVYQDSKDLKEKLK 322 (373)
T ss_pred chhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCcccccc----HHHHHHhcCC-ch-heEEecCHHHHHHHHH
Confidence 577888888888665443 333322 123899999999999632 2233334433 32 4566699999999999
Q ss_pred HhhhCHHHHHHHHHHHHHHHHHh
Q 043830 204 QLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 204 ~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
.++.+++.|+++.+.+.+.+...
T Consensus 323 yll~h~~erkeiae~~ye~V~~~ 345 (373)
T COG4641 323 YLLNHPDERKEIAECAYERVLAR 345 (373)
T ss_pred HHhcCcchHHHHHHhhHHHHHHh
Confidence 99999999999999999998765
No 141
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.04 E-value=0.0043 Score=56.09 Aligned_cols=86 Identities=9% Similarity=0.111 Sum_probs=54.4
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEE-cCCHHHHHHHHHHhhh
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQ-VSGKSELEEALSQLFS 207 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~-~~~~~~l~~~i~~ll~ 207 (248)
.++++..++ +|+. -+ |-++++||+++|+|+|+-|...+-......+.+. |.|..+. .-+.+++++++.+++.
T Consensus 335 ~~iL~h~~v~~fvt----H~-G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~ 409 (451)
T PLN02410 335 KEVLSHPAVGGFWS----HC-GWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMV 409 (451)
T ss_pred HHHhCCCccCeeee----cC-chhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHc
Confidence 345766544 1331 22 3356899999999999977655555555555443 5444331 2488999999999998
Q ss_pred CHHHHHHHHHHHHHH
Q 043830 208 DARVLEAQQMAAKQA 222 (248)
Q Consensus 208 ~~~~~~~~~~~~~~~ 222 (248)
+++ .+.++++++++
T Consensus 410 ~~~-~~~~r~~a~~l 423 (451)
T PLN02410 410 EEE-GEEMRKRAISL 423 (451)
T ss_pred CCc-HHHHHHHHHHH
Confidence 764 44455555544
No 142
>PLN02173 UDP-glucosyl transferase family protein
Probab=96.96 E-value=0.0071 Score=54.60 Aligned_cols=86 Identities=10% Similarity=0.131 Sum_probs=55.6
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEEc------CCHHHHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQV------SGKSELEEAL 202 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~~------~~~~~l~~~i 202 (248)
.+++++..+ +|+ | -+ |.++++||+++|+|+|+-|..++.......+.+. |.|..+.. -+.+++.+++
T Consensus 328 ~~iL~H~~v~~Fv--t--Hc-GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av 402 (449)
T PLN02173 328 LQVLSNKAIGCFM--T--HC-GWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSI 402 (449)
T ss_pred HHHhCCCccceEE--e--cC-ccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHH
Confidence 345777652 133 1 33 4567999999999999977654544455556543 55555532 1689999999
Q ss_pred HHhhhCHHHHHHHHHHHHHH
Q 043830 203 SQLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 203 ~~ll~~~~~~~~~~~~~~~~ 222 (248)
.+++.+++ .++|+++++++
T Consensus 403 ~~vm~~~~-~~~~r~~a~~~ 421 (449)
T PLN02173 403 KEVMEGEK-SKEMKENAGKW 421 (449)
T ss_pred HHHhcCCh-HHHHHHHHHHH
Confidence 99998743 34555555544
No 143
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=96.95 E-value=0.012 Score=53.63 Aligned_cols=108 Identities=7% Similarity=0.070 Sum_probs=65.8
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHH-hcCCceEEEc----CCHHHHHHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ-RLNPKSVLQV----SGKSELEEALSQ 204 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~-~~g~g~~~~~----~~~~~l~~~i~~ 204 (248)
.++++...+ +|+ .-+ |.++++||+.+|+|+|+-|..++-......+. ..|.|..+.. -+.+++.++|.+
T Consensus 349 ~~iL~h~~vg~Fi----tH~-G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~ 423 (481)
T PLN02992 349 AEILAHQAVGGFL----THC-GWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRK 423 (481)
T ss_pred HHHhCCcccCeeE----ecC-chhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHH
Confidence 345777665 233 132 34569999999999999776555544555553 4554444422 378999999999
Q ss_pred hhhCHH------HHHHHHHHHHHHHHH--h--chhHHHHHHHHHHHHhh
Q 043830 205 LFSDAR------VLEAQQMAAKQAFCA--L--SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 205 ll~~~~------~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~ 243 (248)
++.+++ ..+++++.+++.+.. . ....+.++++.+.+++.
T Consensus 424 vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~~~ 472 (481)
T PLN02992 424 VMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRFLE 472 (481)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 997642 334455555555521 1 23455566666666554
No 144
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.90 E-value=0.0027 Score=58.08 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=55.6
Q ss_pred HHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHHHHHHHHHhhhC
Q 043830 132 QLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSELEEALSQLFSD 208 (248)
Q Consensus 132 ~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~l~~~i~~ll~~ 208 (248)
++++...+ +|+. -| |..++.||+.+|+|+|+-|--++-......+.+.|.|..+... +.+.|.++|.++++|
T Consensus 335 ~lL~hp~v~~fit----Hg-G~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 335 DLLAHPRVKLFIT----HG-GLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLEN 409 (500)
T ss_dssp HHHTSTTEEEEEE----S---HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHS
T ss_pred hhhhcccceeeee----cc-ccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhh
Confidence 55766654 2441 22 2345899999999999988777777777778888865555432 679999999999999
Q ss_pred HHHHHHHHHH
Q 043830 209 ARVLEAQQMA 218 (248)
Q Consensus 209 ~~~~~~~~~~ 218 (248)
+..++...+-
T Consensus 410 ~~y~~~a~~l 419 (500)
T PF00201_consen 410 PSYKENAKRL 419 (500)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8766554443
No 145
>PLN03004 UDP-glycosyltransferase
Probab=96.88 E-value=0.0068 Score=54.78 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=52.4
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh-cCCceEEEc-----CCHHHHHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR-LNPKSVLQV-----SGKSELEEALS 203 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~-~g~g~~~~~-----~~~~~l~~~i~ 203 (248)
..+++.+++ +|+ + -+ |-++++||+++|+|+|+-|...+.......+.+ -|.|..+.. -+.+++++++.
T Consensus 345 ~~iL~H~~v~~Fv--T--H~-G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~ 419 (451)
T PLN03004 345 VPVLNHKAVGGFV--T--HC-GWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQ 419 (451)
T ss_pred HHHhCCCccceEe--c--cC-cchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHH
Confidence 446888887 344 1 22 345699999999999997755444444445543 365554532 27899999999
Q ss_pred HhhhCHHHHH
Q 043830 204 QLFSDARVLE 213 (248)
Q Consensus 204 ~ll~~~~~~~ 213 (248)
+++.|+..++
T Consensus 420 ~vm~~~~~r~ 429 (451)
T PLN03004 420 EIIGECPVRE 429 (451)
T ss_pred HHhcCHHHHH
Confidence 9998865443
No 146
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=96.88 E-value=0.11 Score=46.13 Aligned_cols=204 Identities=15% Similarity=0.159 Sum_probs=107.5
Q ss_pred HHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeEEEEeCCCcch--------HHHHHHHHHHHHHhC
Q 043830 9 QLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQVWMASSIHRGE--------EKVMLAVHKVLMQKN 77 (248)
Q Consensus 9 ~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~~~~--------~~~ll~a~~~l~~~~ 77 (248)
...|+..++|..+|-|..|...... .........+..++ ++++++++.++... ....++..+......
T Consensus 165 ~~f~~~~~~i~~~G~Pr~D~~~~~~-~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (388)
T COG1887 165 EAFNIDKENILETGYPRNDKLFDEA-GKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLG 243 (388)
T ss_pred HHhcccccceeecCcccchhhhhhc-cchhhhHHHhhhcCCcccCceEEecCCccCCccccchhhhhhhhhHHHHHHhhc
Confidence 3478899999999977766543211 01111111222232 67899988776422 222222222222222
Q ss_pred -CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEE-EEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 78 -PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVY-VVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 -~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
.+..+++-.+ |-....+...-.. ...+. +.+ ..++..+|..+|+++. . . .-++
T Consensus 244 ~~~~~ii~k~H-p~is~~~~~~~~~----------------~~~~~~vs~-~~di~dll~~sDiLIT-----D-y-SSv~ 298 (388)
T COG1887 244 ENEYVIIVKPH-PLISDKIDKRYAL----------------DDFVLDVSD-NADINDLLLVSDILIT-----D-Y-SSVI 298 (388)
T ss_pred cCCeEEEEecC-hhhhhhhhhhhhc----------------cceeEeccc-chhHHHHHhhhCEEEe-----e-c-hHHH
Confidence 4565555554 4432222221111 01122 333 4589999999999654 2 1 3356
Q ss_pred HHHHhhCCcEEEC-CCCCCh---HHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhH
Q 043830 156 SEAAAAGCAVLTG-PHIGHY---SNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGI 230 (248)
Q Consensus 156 lEA~a~G~Pvi~~-~~~~~~---~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~ 230 (248)
.|.|...+|||.. ++.... ++.+.+...... +-.+.+.+++.++|.....+++.+.+-.+.-.+....+ .+.+
T Consensus 299 fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~P--g~~~~~~~~li~ai~~~~~~~~~~~~k~~~~~~~~~~~~dg~s 376 (388)
T COG1887 299 FDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAP--GEVVETQEELIDAIKPYDEDGNYDLEKLRVFNDKFNSYEDGRS 376 (388)
T ss_pred HHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCC--ccccccHHHHHHHHHhhhcccchhHHHHHHHHHhhcccccccH
Confidence 8999999999973 332111 122222222221 22347888999999888875554443333333333333 3677
Q ss_pred HHHHHHHHHH
Q 043830 231 VANVWNLLNF 240 (248)
Q Consensus 231 ~~~~l~~~~~ 240 (248)
.+++++.+.+
T Consensus 377 s~ri~~~i~~ 386 (388)
T COG1887 377 SERILKLIFK 386 (388)
T ss_pred HHHHHHHHhc
Confidence 8888776643
No 147
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.77 E-value=0.014 Score=53.11 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=45.7
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHH-HHhcCCceEEEc---------CCHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSA-MQRLNPKSVLQV---------SGKSELE 199 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~-~~~~g~g~~~~~---------~~~~~l~ 199 (248)
..+++...+ +|+. -+ |-++++||+++|+|+|+-|..++-...... +..-|.|..+.. -+.++++
T Consensus 351 ~~iL~h~~vg~fvt----H~-G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~ 425 (475)
T PLN02167 351 VEILAHKAIGGFVS----HC-GWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIA 425 (475)
T ss_pred HHHhcCcccCeEEe----eC-CcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHH
Confidence 345666443 2441 22 345699999999999996654333333322 233454444431 2789999
Q ss_pred HHHHHhhhCH
Q 043830 200 EALSQLFSDA 209 (248)
Q Consensus 200 ~~i~~ll~~~ 209 (248)
+++.+++.++
T Consensus 426 ~av~~~m~~~ 435 (475)
T PLN02167 426 GAVRSLMDGE 435 (475)
T ss_pred HHHHHHhcCC
Confidence 9999999754
No 148
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.68 E-value=0.016 Score=52.47 Aligned_cols=82 Identities=9% Similarity=0.144 Sum_probs=53.0
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEEc-----CCHHHHHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQV-----SGKSELEEALS 203 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~~-----~~~~~l~~~i~ 203 (248)
.++++..++ +|+ + -+ |.++++||+.+|+|+|+-|..++.......+.+. |.|..+.. -+.+++.+++.
T Consensus 338 ~~iL~h~~vg~fv--t--H~-G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~ 412 (455)
T PLN02152 338 IEVLRHRAVGCFV--T--HC-GWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLE 412 (455)
T ss_pred HHHhCCcccceEE--e--eC-CcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHH
Confidence 345777765 344 1 33 4567999999999999977555554555555442 34455532 37899999999
Q ss_pred HhhhCHHHHHHHHHHH
Q 043830 204 QLFSDARVLEAQQMAA 219 (248)
Q Consensus 204 ~ll~~~~~~~~~~~~~ 219 (248)
+++.|+. .+|++++
T Consensus 413 ~vm~~~~--~~~r~~a 426 (455)
T PLN02152 413 AVMEEKS--VELRESA 426 (455)
T ss_pred HHHhhhH--HHHHHHH
Confidence 9997643 3344444
No 149
>PLN02554 UDP-glycosyltransferase family protein
Probab=96.57 E-value=0.027 Score=51.41 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=42.1
Q ss_pred CCCHHHHHhhCCcEEECCCCCChHHHHHH-HHhcCCceEEE-------------cCCHHHHHHHHHHhhh-CHHHHHHH
Q 043830 152 GHNISEAAAAGCAVLTGPHIGHYSNMVSA-MQRLNPKSVLQ-------------VSGKSELEEALSQLFS-DARVLEAQ 215 (248)
Q Consensus 152 g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~-~~~~g~g~~~~-------------~~~~~~l~~~i~~ll~-~~~~~~~~ 215 (248)
-.+++||+.+|+|+|+-|..++-...... +...|.|..+. .-+.+++.++|.+++. |+..++..
T Consensus 370 ~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a 448 (481)
T PLN02554 370 WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRV 448 (481)
T ss_pred cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHH
Confidence 35689999999999997654433333322 33445544442 1278999999999996 66555443
No 150
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.48 E-value=0.2 Score=43.39 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=57.3
Q ss_pred ccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCC-CCHHHHHhhCCcEEECCCCCChHHHH---HHHHhcCCceEEEc--
Q 043830 119 TNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAG-HNISEAAAAGCAVLTGPHIGHYSNMV---SAMQRLNPKSVLQV-- 192 (248)
Q Consensus 119 ~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg-~~~lEA~a~G~Pvi~~~~~~~~~~~~---~~~~~~g~g~~~~~-- 192 (248)
.+|-+..+..++..+++.|+.++. ++| +++-|-+++|+|.++-|......|.. ..+.+-|---++.+
T Consensus 277 p~i~I~~f~~~~~~ll~gA~~vVS-------m~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~ 349 (400)
T COG4671 277 PHISIFEFRNDFESLLAGARLVVS-------MGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPEN 349 (400)
T ss_pred CCeEEEEhhhhHHHHHHhhheeee-------cccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCccc
Confidence 356666666799999999999643 233 56899999999999988765555532 23444442112333
Q ss_pred CCHHHHHHHHHHhhhCH
Q 043830 193 SGKSELEEALSQLFSDA 209 (248)
Q Consensus 193 ~~~~~l~~~i~~ll~~~ 209 (248)
-+++.|++++..++.-|
T Consensus 350 lt~~~La~al~~~l~~P 366 (400)
T COG4671 350 LTPQNLADALKAALARP 366 (400)
T ss_pred CChHHHHHHHHhcccCC
Confidence 26899999999888743
No 151
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.48 E-value=0.011 Score=49.54 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHH-HHHHHHhc-CCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKE-IAQKLQKE-GEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~-l~~~~~~~-~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~ 140 (248)
...+++.+..+.+..|+++++|-.+ |..... -.....+. +. .++.+.+....+..++..||.+
T Consensus 139 ~~~~~~~l~~~~~~~p~~~lvvK~H-P~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~Ll~~s~~V 203 (269)
T PF05159_consen 139 QADFLDMLESFAKENPDAKLVVKPH-PDERGGNKYSYLEELPNL--------------PNVVIIDDDVNLYELLEQSDAV 203 (269)
T ss_pred HhHHHHHHHHHHHHCCCCEEEEEEC-chhhCCCChhHhhhhhcC--------------CCeEEECCCCCHHHHHHhCCEE
Confidence 3456677777777788998776654 521100 00111111 11 1233444445789999999998
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++..|. +-+||+.+|+||++
T Consensus 204 vtinSt-------vGlEAll~gkpVi~ 223 (269)
T PF05159_consen 204 VTINST-------VGLEALLHGKPVIV 223 (269)
T ss_pred EEECCH-------HHHHHHHcCCceEE
Confidence 775443 34799999999998
No 152
>PLN02207 UDP-glycosyltransferase
Probab=96.33 E-value=0.044 Score=49.84 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=37.5
Q ss_pred CCCHHHHHhhCCcEEECCCCCChHHHHHHHHh-cCCceEEE---------cCCHHHHHHHHHHhhh
Q 043830 152 GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR-LNPKSVLQ---------VSGKSELEEALSQLFS 207 (248)
Q Consensus 152 g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~-~g~g~~~~---------~~~~~~l~~~i~~ll~ 207 (248)
-++++||+++|+|+|+-|..++-......+.+ -|.|..+. .-+.+++.++|.+++.
T Consensus 360 wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 360 WNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 45699999999999996654433333443333 35433221 1277999999999997
No 153
>PLN02555 limonoid glucosyltransferase
Probab=96.22 E-value=0.039 Score=50.33 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=46.9
Q ss_pred CCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEE-------cCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 043830 151 AGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQ-------VSGKSELEEALSQLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~-------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 222 (248)
|-.+++||+.+|+|+|+-|..++-......+.+. |.|..+. .-+.+++.+++.+++.+++ -++|+++++++
T Consensus 364 G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~~l 442 (480)
T PLN02555 364 GWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEK-AAELKQNALKW 442 (480)
T ss_pred CcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCch-HHHHHHHHHHH
Confidence 4466999999999999977554444444445544 5444331 1268999999999997643 34555555554
Q ss_pred H
Q 043830 223 F 223 (248)
Q Consensus 223 ~ 223 (248)
.
T Consensus 443 ~ 443 (480)
T PLN02555 443 K 443 (480)
T ss_pred H
Confidence 3
No 154
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.09 E-value=0.12 Score=47.94 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAV 141 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~ 141 (248)
...++.+..+.+.-|+-.|++.--.---.+.++..+.++|++. ++|.|.+ ..+|--.-++.||+++
T Consensus 773 P~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p------------~riifs~va~k~eHvrr~~LaDv~L 840 (966)
T KOG4626|consen 773 PSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEP------------DRIIFSPVAAKEEHVRRGQLADVCL 840 (966)
T ss_pred HHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCc------------cceeeccccchHHHHHhhhhhhhcc
Confidence 4678999999999999877775321111156888899999973 4666655 2356667789999965
Q ss_pred EcCccCCCCCCCC-HHHHHhhCCcEEECCCCCChH--HHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 043830 142 IGGSFLPGLAGHN-ISEAAAAGCAVLTGPHIGHYS--NMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMA 218 (248)
Q Consensus 142 v~~s~~e~~gg~~-~lEA~a~G~Pvi~~~~~~~~~--~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 218 (248)
-.| +. .|++ -.|.+-+|+|+|+-|.. ... -....+..-|.|- +.+++.++-.+.-.+|-.|.+..+.|+..
T Consensus 841 DTp-lc---nGhTTg~dvLw~GvPmVTmpge-~lAsrVa~Sll~~~Gl~h-liak~~eEY~~iaV~Latd~~~L~~lr~~ 914 (966)
T KOG4626|consen 841 DTP-LC---NGHTTGMDVLWAGVPMVTMPGE-TLASRVAASLLTALGLGH-LIAKNREEYVQIAVRLATDKEYLKKLRAK 914 (966)
T ss_pred cCc-Cc---CCcccchhhhccCCceeecccH-HHHHHHHHHHHHHcccHH-HHhhhHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 322 22 3555 58999999999986532 111 1233444455443 45689999999999999999888888877
Q ss_pred HHHHH
Q 043830 219 AKQAF 223 (248)
Q Consensus 219 ~~~~~ 223 (248)
-|...
T Consensus 915 l~~~r 919 (966)
T KOG4626|consen 915 LRKAR 919 (966)
T ss_pred HHHHh
Confidence 76643
No 155
>PLN02534 UDP-glycosyltransferase
Probab=95.57 E-value=0.19 Score=46.06 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=50.1
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEE---------------cC
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQ---------------VS 193 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~---------------~~ 193 (248)
..++...++ +|+ .-+ |..+++||+++|+|+|+-|..++.......+.+. +.|..+. .-
T Consensus 355 ~~iL~h~~v~~fv----tH~-G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v 429 (491)
T PLN02534 355 VLILSHPAIGGFL----THC-GWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLV 429 (491)
T ss_pred HHHhcCCccceEE----ecC-ccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCcc
Confidence 446777765 233 133 4567999999999999976554444443333321 2222221 13
Q ss_pred CHHHHHHHHHHhhhC-HHHHHHHHHHHHH
Q 043830 194 GKSELEEALSQLFSD-ARVLEAQQMAAKQ 221 (248)
Q Consensus 194 ~~~~l~~~i~~ll~~-~~~~~~~~~~~~~ 221 (248)
+.+++++++.+++.+ .+.-++|++++.+
T Consensus 430 ~~eev~~~v~~~m~~~~eeg~~~R~rA~e 458 (491)
T PLN02534 430 KKDEVEKAVKTLMDDGGEEGERRRRRAQE 458 (491)
T ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 688999999999962 2223344444444
No 156
>PLN03015 UDP-glucosyl transferase
Probab=95.42 E-value=0.13 Score=46.78 Aligned_cols=72 Identities=10% Similarity=0.156 Sum_probs=43.7
Q ss_pred CCCCHHHHHhhCCcEEECCCCCChHHHHHHH-HhcCCceEEE------cCCHHHHHHHHHHhhhC-HHHHHHHHHHHHHH
Q 043830 151 AGHNISEAAAAGCAVLTGPHIGHYSNMVSAM-QRLNPKSVLQ------VSGKSELEEALSQLFSD-ARVLEAQQMAAKQA 222 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~-~~~g~g~~~~------~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~ 222 (248)
|-++++||+++|+|+|+-|..++.......+ ..-|.|..+. .-+.+++.++|.+++.. .+.-++|+++++++
T Consensus 362 GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~l 441 (470)
T PLN03015 362 GWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEV 441 (470)
T ss_pred CchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHH
Confidence 3456899999999999976544444444433 2234333331 13778999999999952 12233444444443
No 157
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=95.34 E-value=0.37 Score=36.55 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=45.4
Q ss_pred cChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC---CChH-HHHHHHHhcCCceEEEcCCHHHHHH
Q 043830 125 DTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI---GHYS-NMVSAMQRLNPKSVLQVSGKSELEE 200 (248)
Q Consensus 125 ~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~---~~~~-~~~~~~~~~g~g~~~~~~~~~~l~~ 200 (248)
++...|.+.++.||+++. . . |.-+++|.+..|+|.|+..+. .|.+ |.++.+.+.| +++.+ .+..|.+
T Consensus 69 ~f~psl~e~I~~AdlVIs---H-A--GaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~eg--yL~~C-~ps~L~~ 139 (170)
T KOG3349|consen 69 DFSPSLTEDIRSADLVIS---H-A--GAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEG--YLYYC-TPSTLPA 139 (170)
T ss_pred ecCccHHHHHhhccEEEe---c-C--CcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcC--cEEEe-eccchHH
Confidence 444578999999999643 2 1 445799999999999974432 2333 5667777766 56665 2233544
Q ss_pred HHH
Q 043830 201 ALS 203 (248)
Q Consensus 201 ~i~ 203 (248)
.+.
T Consensus 140 ~L~ 142 (170)
T KOG3349|consen 140 GLA 142 (170)
T ss_pred HHH
Confidence 444
No 158
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.97 E-value=0.44 Score=33.36 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=51.0
Q ss_pred EEEecCCCCCHHHHHHHHHhcCCceEEe--cccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH----
Q 043830 82 TIIVPRHPQHGKEIAQKLQKEGEVVALR--SRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI---- 155 (248)
Q Consensus 82 lvivG~~~~~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~---- 155 (248)
++|||..+.....+++.+++.|.....+ -.+.. .....++.....||++++..++. .|..
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~----------~~~~~l~~~i~~aD~VIv~t~~v----sH~~~~~v 67 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDE----------KKASRLPSKIKKADLVIVFTDYV----SHNAMWKV 67 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCc----------cchhHHHHhcCCCCEEEEEeCCc----ChHHHHHH
Confidence 6788886667688999999999875444 11110 11124888999999998866543 3432
Q ss_pred -HHHHhhCCcEEECCC
Q 043830 156 -SEAAAAGCAVLTGPH 170 (248)
Q Consensus 156 -lEA~a~G~Pvi~~~~ 170 (248)
-+|-..|+|++....
T Consensus 68 k~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 68 KKAAKKYGIPIIYSRS 83 (97)
T ss_pred HHHHHHcCCcEEEECC
Confidence 456778999998753
No 159
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.78 E-value=1.7 Score=37.38 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAV 141 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~ 141 (248)
..+++.+..+.+.++ ..++|..+---- .++.+.+++.- . ....+++.+ ..+-+..+|+.||.+|
T Consensus 168 ~~l~~~l~~~~~~~~-~~~~vttSRRTp-~~~~~~L~~~~-~-----------~~~~~~~~~~~~~nPy~~~La~ad~i~ 233 (311)
T PF06258_consen 168 ERLLDQLAALAAAYG-GSLLVTTSRRTP-PEAEAALRELL-K-----------DNPGVYIWDGTGENPYLGFLAAADAIV 233 (311)
T ss_pred HHHHHHHHHHHHhCC-CeEEEEcCCCCc-HHHHHHHHHhh-c-----------CCCceEEecCCCCCcHHHHHHhCCEEE
Confidence 477788887777766 677777652111 33343333321 0 011222222 2235788999999998
Q ss_pred EcCccCCCCCCCCHHHHHhhCCcEEECCCCC---ChHHHHHHHHhcCCceEEEcCCH
Q 043830 142 IGGSFLPGLAGHNISEAAAAGCAVLTGPHIG---HYSNMVSAMQRLNPKSVLQVSGK 195 (248)
Q Consensus 142 v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~---~~~~~~~~~~~~g~g~~~~~~~~ 195 (248)
|.+... ++ +.||++.|+||.+-+-.+ .+....+.+.+.| .+....+.
T Consensus 234 VT~DSv-SM----vsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g--~~r~~~~~ 283 (311)
T PF06258_consen 234 VTEDSV-SM----VSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERG--AVRPFTGW 283 (311)
T ss_pred EcCccH-HH----HHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCC--CEEECCCc
Confidence 854211 12 799999999999843222 2334555666655 56555544
No 160
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=94.38 E-value=1 Score=38.49 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=64.2
Q ss_pred eEEEEe-CCCc-chHHHHHHHHHHHHHhCCCeEEEEecCCC----CCHHHHHHHHHhcCCceEEecccCCCCCCccEEEE
Q 043830 51 QVWMAS-SIHR-GEEKVMLAVHKVLMQKNPNLVTIIVPRHP----QHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVV 124 (248)
Q Consensus 51 ~v~l~~-~~~~-~~~~~ll~a~~~l~~~~~~~~lvivG~~~----~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ 124 (248)
..+++| |..+ +++..+|+++.+. ...|+++++.=+-| .+.+++++..+++-- ..++.++
T Consensus 147 ~tIlvGNSgd~SN~Hie~L~~l~~~--~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~-------------~~~~~~L 211 (322)
T PRK02797 147 MTILVGNSGDRSNRHIEALRALHQQ--FGDNVKIIVPMGYPANNQAYIEEVRQAGLALFG-------------AENFQIL 211 (322)
T ss_pred eEEEEeCCCCCcccHHHHHHHHHHH--hCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC-------------cccEEeh
Confidence 344444 3344 4444556665443 34577755532222 133455555554321 1233333
Q ss_pred -c--ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcC
Q 043830 125 -D--TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLN 185 (248)
Q Consensus 125 -~--~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g 185 (248)
+ ++++...+++.+|+.+..--...| .-|+.=.+.+|+||+.+....- +.++.+.|
T Consensus 212 ~e~l~f~eYl~lL~~~Dl~~f~~~RQQg--iGnl~lLi~~G~~v~l~r~n~f----wqdl~e~g 269 (322)
T PRK02797 212 TEKLPFDDYLALLRQCDLGYFIFARQQG--IGTLCLLIQLGKPVVLSRDNPF----WQDLTEQG 269 (322)
T ss_pred hhhCCHHHHHHHHHhCCEEEEeechhhH--HhHHHHHHHCCCcEEEecCCch----HHHHHhCC
Confidence 3 457888999999998764334344 3467889999999999765432 34555544
No 161
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.52 E-value=1.7 Score=37.17 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=44.5
Q ss_pred HHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHH
Q 043830 132 QLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDAR 210 (248)
Q Consensus 132 ~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~ 210 (248)
.++-.|+++ ++ . ||.---||+..|+|.|... .|..-.+-+.+.+.| ..+...|+.+..+...+++.++.
T Consensus 248 ~Llyya~lv-ig----~--ggTMarEaAlLGtpaIs~~-pGkll~vdk~lie~G--~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 248 SLLYYATLV-IG----A--GGTMAREAALLGTPAISCY-PGKLLAVDKYLIEKG--LLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred HHHhhhhee-ec----C--CchHHHHHHHhCCceEEec-CCccccccHHHHhcC--ceeecCCHHHHHHHHHHHhhchh
Confidence 345566674 43 2 2333589999999999754 222212334556655 77887888888888888886654
No 162
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=93.33 E-value=3.1 Score=35.28 Aligned_cols=133 Identities=16% Similarity=0.123 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHHhCC
Q 043830 3 LQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRG----EEKVMLAVHKVLMQKNP 78 (248)
Q Consensus 3 ~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~~~----~~~~ll~a~~~l~~~~~ 78 (248)
..++.+.++|+ ++.+++++.|....... +. . .....+.+.+....++. ..+.+.+++..+.++ .
T Consensus 137 ~S~~~l~~~g~---~i~~~~D~a~~l~~~~~---~~-~----~~~~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~-~ 204 (298)
T TIGR03609 137 ASYRLLKRLGI---PAELAADPVWLLPPEPW---PG-G----EPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRD-T 204 (298)
T ss_pred HHHHHHHHhCC---CceEeCChhhhCCCCcc---cc-c----ccCCCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHh-h
Confidence 45667777888 37888866553221100 00 0 00012234444433321 244667777776554 2
Q ss_pred CeEEEEecCCCCCHHHHHHHHH-hcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQ-KEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lE 157 (248)
+.++++++.+.+...+..+.+. .+.-. ..++......++..+++.+|++ ++..+ |..+=
T Consensus 205 g~~v~~i~~~~~~D~~~~~~l~~~~~~~-------------~~i~~~~~~~e~~~~i~~~~~v-I~~Rl------H~~I~ 264 (298)
T TIGR03609 205 GAFVLFLPFQQPQDLPLARALRDQLLGP-------------AEVLSPLDPEELLGLFASARLV-IGMRL------HALIL 264 (298)
T ss_pred CCeEEEEeCCcchhHHHHHHHHHhcCCC-------------cEEEecCCHHHHHHHHhhCCEE-EEech------HHHHH
Confidence 4566666754322123333332 22111 1222222346888899999984 54332 56799
Q ss_pred HHhhCCcEEE
Q 043830 158 AAAAGCAVLT 167 (248)
Q Consensus 158 A~a~G~Pvi~ 167 (248)
|+.+|+|++.
T Consensus 265 A~~~gvP~i~ 274 (298)
T TIGR03609 265 AAAAGVPFVA 274 (298)
T ss_pred HHHcCCCEEE
Confidence 9999999996
No 163
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=92.18 E-value=0.84 Score=41.57 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=45.2
Q ss_pred CCCC-HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC---CHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 043830 151 AGHN-ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS---GKSELEEALSQLFSDARVLEAQQMAAK 220 (248)
Q Consensus 151 gg~~-~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~---~~~~l~~~i~~ll~~~~~~~~~~~~~~ 220 (248)
||.+ ++|++.+|+|+|+-|--++-.-....+.+.|.+.+.... +.+ +..++..++.+++..+...+-+.
T Consensus 362 gG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~-~~~~~~~il~~~~y~~~~~~l~~ 434 (496)
T KOG1192|consen 362 GGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEE-LLEAIKEILENEEYKEAAKRLSE 434 (496)
T ss_pred CcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHH-HHHHHHHHHcChHHHHHHHHHHH
Confidence 4544 799999999999756443433445566666654444432 334 88899999988877655544443
No 164
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=2.7 Score=33.92 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=28.8
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCC--ceEEEcCCHHHHHHHHHHhhhCHHHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNP--KSVLQVSGKSELEEALSQLFSDARVLE 213 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~--g~~~~~~~~~~l~~~i~~ll~~~~~~~ 213 (248)
+++=.-.-.||+.|..++...+. ..+|+ -+.+.+++--+||-+++--+.....|+
T Consensus 178 ~L~d~l~ssPii~ge~g~a~~~~----~a~g~~f~fgvdp~~DPELAlALRlSMEEer~rQ 234 (259)
T KOG2884|consen 178 LLSDALLSSPIIQGEDGGAAAGL----GANGMDFEFGVDPEDDPELALALRLSMEEERARQ 234 (259)
T ss_pred cHHHHhhcCceeccCcccccccc----cccccccccCCCcccCHHHHHHHHhhHHHHHHHH
Confidence 45555667888887543211111 11111 034666666678888885554433333
No 165
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=91.58 E-value=1.1 Score=40.09 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChH
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYS 175 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~ 175 (248)
+..++.+-|.+- |+||++|+ ||-++.|--.+|+|-|+++ ..+|.
T Consensus 493 DYeeFVRGCHLG-VFPSYYEP-WGYTPAECTVMGiPSvtTN-lSGFG 536 (692)
T KOG3742|consen 493 DYEEFVRGCHLG-VFPSYYEP-WGYTPAECTVMGIPSVTTN-LSGFG 536 (692)
T ss_pred CHHHHhcccccc-ccccccCC-CCCCchheEEecccccccc-ccchh
Confidence 567788889885 68999997 8999999999999999764 34554
No 166
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=91.01 E-value=6.5 Score=31.24 Aligned_cols=99 Identities=17% Similarity=0.257 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHh---------hC
Q 043830 92 GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAA---------AG 162 (248)
Q Consensus 92 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a---------~G 162 (248)
..++.+++++.|...-.-.. +.+ +.+++..+....|.+++. |..+||||+.+.|-|. +.
T Consensus 101 ~~~lv~~ir~~Gmk~G~alk-----PgT------~Ve~~~~~~~~~D~vLvM-tVePGFGGQkFme~mm~KV~~lR~kyp 168 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALK-----PGT------PVEDLEPLAEHVDMVLVM-TVEPGFGGQKFMEDMMPKVEWLREKYP 168 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeC-----CCC------cHHHHHHhhccccEEEEE-EecCCCchhhhHHHHHHHHHHHHHhCC
Confidence 46788888988876432211 122 246788888899998875 5668999999998873 56
Q ss_pred CcEEECCCCCChHHHHHHHHhcCCc------eEEEcCCHHHHHHHHH
Q 043830 163 CAVLTGPHIGHYSNMVSAMQRLNPK------SVLQVSGKSELEEALS 203 (248)
Q Consensus 163 ~Pvi~~~~~~~~~~~~~~~~~~g~g------~~~~~~~~~~l~~~i~ 203 (248)
.+.|=.+ +|--++.+....+.|+- .++...|+.+....|.
T Consensus 169 ~l~ievD-GGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr 214 (224)
T KOG3111|consen 169 NLDIEVD-GGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLR 214 (224)
T ss_pred CceEEec-CCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHH
Confidence 6777322 11112223333333321 2344467776655443
No 167
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.92 E-value=1.9 Score=36.12 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~ 140 (248)
.+...+.++.+.++ +.+++++|...++ +..++.....+-.. .+.+.+ +..++..+++.||++
T Consensus 139 ~~~~~~l~~~l~~~--~~~ivl~g~~~e~-~~~~~i~~~~~~~~-------------~~~~~~~~~l~e~~~li~~~~l~ 202 (279)
T cd03789 139 AERFAALADRLLAR--GARVVLTGGPAER-ELAEEIAAALGGPR-------------VVNLAGKTSLRELAALLARADLV 202 (279)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEechhhH-HHHHHHHHhcCCCc-------------cccCcCCCCHHHHHHHHHhCCEE
Confidence 45677777777654 7888888864432 44444433321110 111222 357899999999995
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++. ++ |. .-=|.++|+|+|+
T Consensus 203 -I~~---Ds--g~-~HlA~a~~~p~i~ 222 (279)
T cd03789 203 -VTN---DS--GP-MHLAAALGTPTVA 222 (279)
T ss_pred -Eee---CC--HH-HHHHHHcCCCEEE
Confidence 543 21 22 2345799999987
No 168
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=88.32 E-value=1.9 Score=36.38 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=28.4
Q ss_pred hHHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHh--hCCcEEE
Q 043830 128 GELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAA--AGCAVLT 167 (248)
Q Consensus 128 ~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~ 167 (248)
++|.+.+. .+|+ +++.|-..|.....+++.|+ +..|||.
T Consensus 95 ~~L~e~i~~v~ptv-lIG~S~~~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 95 KSLLEVVKAVKPTV-LIGLSGVGGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CCHHHHHHhcCCCE-EEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 46788888 7898 67777544432445899999 6889997
No 169
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=87.51 E-value=6.2 Score=25.95 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=39.5
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHH-HHHHHHhcCCceE
Q 043830 50 RQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKE-IAQKLQKEGEVVA 107 (248)
Q Consensus 50 ~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~-l~~~~~~~~l~~~ 107 (248)
.+|++.+|+...+...+-+++.++..+.|++. +|-|..|.-.+. ..+++++.|++..
T Consensus 4 ~rVli~GgR~~~D~~~i~~~Ld~~~~~~~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 4 MRVLITGGRDWTDHELIWAALDKVHARHPDMV-LVHGGAPKGADRIAARWARERGVPVI 61 (71)
T ss_pred CEEEEEECCccccHHHHHHHHHHHHHhCCCEE-EEECCCCCCHHHHHHHHHHHCCCeeE
Confidence 35677777766677788889998888888864 666665443333 4566888888644
No 170
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.49 E-value=1.8 Score=33.53 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCC---------CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceE-EEcCCHHHH
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGH---------NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSV-LQVSGKSEL 198 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~---------~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~-~~~~~~~~l 198 (248)
.+...+..||++++- | .|+| .+-|.|-+++|+|++-+-.+..-.++.+...+.-.+ +.+.|.+.+
T Consensus 93 al~rA~~~aDvIIID----E-IGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i 167 (179)
T COG1618 93 ALRRALEEADVIIID----E-IGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRI 167 (179)
T ss_pred HHHHHhhcCCEEEEe----c-ccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHH
Confidence 466778889997761 1 2222 356788999999985432111123444544443233 456888888
Q ss_pred HHHHHHhhhC
Q 043830 199 EEALSQLFSD 208 (248)
Q Consensus 199 ~~~i~~ll~~ 208 (248)
...|..+|.+
T Consensus 168 ~~~Il~~L~~ 177 (179)
T COG1618 168 LNEILSVLKG 177 (179)
T ss_pred HHHHHHHhcc
Confidence 8888887754
No 171
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=87.40 E-value=1.8 Score=35.94 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=29.0
Q ss_pred hHHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHh--hCCcEEE
Q 043830 128 GELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAA--AGCAVLT 167 (248)
Q Consensus 128 ~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~ 167 (248)
++|.+... .+|+ +++.|-.+|.....++++|+ +..|||.
T Consensus 96 ~~L~eav~~~kptv-lIG~S~~~g~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 96 GDLEDAVEAAKPDF-LIGVSRVGGAFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred CCHHHHHHhhCCCE-EEEeCCCCCCCCHHHHHHHhhcCCCCEEE
Confidence 46788888 8998 67777655433445899999 6789997
No 172
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.91 E-value=20 Score=31.28 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=38.9
Q ss_pred ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcC
Q 043830 126 TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLN 185 (248)
Q Consensus 126 ~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g 185 (248)
+++|.-.+++.+|+.+..-....| --|+.=.+.+|+||+.+... ..+.++.+.+
T Consensus 255 pf~eYl~lL~~cDl~if~~~RQQg--iGnI~lLl~~G~~v~L~~~n----p~~~~l~~~~ 308 (360)
T PF07429_consen 255 PFDEYLALLSRCDLGIFNHNRQQG--IGNICLLLQLGKKVFLSRDN----PFWQDLKEQG 308 (360)
T ss_pred CHHHHHHHHHhCCEEEEeechhhh--HhHHHHHHHcCCeEEEecCC----hHHHHHHhCC
Confidence 457888999999998764444443 34688899999999997543 3456666655
No 173
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=86.13 E-value=4.8 Score=37.25 Aligned_cols=78 Identities=24% Similarity=0.419 Sum_probs=49.1
Q ss_pred hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEEC----CCC-----------------CChHHHHHHHHhcCC
Q 043830 128 GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG----PHI-----------------GHYSNMVSAMQRLNP 186 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~----~~~-----------------~~~~~~~~~~~~~g~ 186 (248)
.++..+++.|.+ |+|-.+ + .-|..++||+|.|+|.|-- |+. ...+ ..+.....-.
T Consensus 333 ~ef~~lL~~akv-fiGlGf-P-~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhP-Y~e~~iG~Ph 408 (559)
T PF15024_consen 333 DEFQQLLRKAKV-FIGLGF-P-YEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHP-YAEEFIGEPH 408 (559)
T ss_pred HHHHHHHHhhhE-eeecCC-C-CCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCCh-HHHhhCCCCe
Confidence 588999999998 676554 2 2367899999999998851 110 0111 1111111110
Q ss_pred ceEEEcCCHHHHHHHHHHhhhCH
Q 043830 187 KSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 187 g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
-+-+..+|.+++.++|.+.+.++
T Consensus 409 VytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 409 VYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred EEEEcCCCHHHHHHHHHHHHhcC
Confidence 13345589999999999988753
No 174
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=84.43 E-value=20 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.2
Q ss_pred ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 126 TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 126 ~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
...++..+|+.+|++ ++..+ |..+=|+++|+|+|+
T Consensus 247 ~~~~~~~~~~~~~~~-Is~Rl------H~~I~a~~~g~P~i~ 281 (286)
T PF04230_consen 247 SPDELLELISQADLV-ISMRL------HGAILALSLGVPVIA 281 (286)
T ss_pred CHHHHHHHHhcCCEE-EecCC------HHHHHHHHcCCCEEE
Confidence 457899999999995 54332 567899999999996
No 175
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=84.10 E-value=8.6 Score=32.82 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~ 140 (248)
.+...+.+..+.++ +..++++++++++.+..++.....+ . ..+.+ ++.++..+++.||++
T Consensus 197 ~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~--~--------------~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 197 EERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALP--G--------------AVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred HHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCC--C--------------CeecCCCCHHHHHHHHHcCCEE
Confidence 34555555555442 5677777555543233333332221 1 01222 457899999999995
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++.. + |++- =|.|+|+|+|+
T Consensus 259 -I~~D---S-gp~H--lAaa~g~P~i~ 278 (319)
T TIGR02193 259 -VGVD---T-GLTH--LAAALDKPTVT 278 (319)
T ss_pred -EeCC---C-hHHH--HHHHcCCCEEE
Confidence 5442 2 2332 47789999996
No 176
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=83.79 E-value=1.6 Score=36.92 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=30.9
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCC-cEEECCC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGC-AVLTGPH 170 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~-Pvi~~~~ 170 (248)
+..+.|+.+..|++...... +..-++|||++|+ |||+++.
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~--~s~Rl~eal~~GcIPVii~d~ 269 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGP--WSRRLYEALAAGCIPVIISDD 269 (302)
T ss_pred HHHHhcccCeEEEECCCCCc--ccchHHHHhhhceeeEEecCc
Confidence 57788999999988544322 3456899999998 9999754
No 177
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=83.54 E-value=22 Score=32.46 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHhh---CCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHH
Q 043830 148 PGLAGHNISEAAAA---GCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVL 212 (248)
Q Consensus 148 e~~gg~~~lEA~a~---G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~ 212 (248)
++..|+.+++.+.. +.|||+-...++...+++.+...-..++..|-|++.|...+.+.+....+.
T Consensus 59 p~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~ 126 (464)
T COG2204 59 PGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQ 126 (464)
T ss_pred CCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhh
Confidence 44457777776655 799997444457766776664322224455679999999999988755443
No 178
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=82.87 E-value=10 Score=30.28 Aligned_cols=89 Identities=11% Similarity=0.162 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE-ecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL-RSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
..|..|+.-+..-. .-++++||..+.....+++.+...|-.... ++.+. .+++.. ..-+..=|+++|
T Consensus 47 ~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgG--------tLTN~~---~~~~~~Pdlliv 114 (196)
T TIGR01012 47 ERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPG--------TFTNPM---QKAFREPEVVVV 114 (196)
T ss_pred HHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCC--------CCCCcc---ccccCCCCEEEE
Confidence 45555555444333 446888897665445566667666654321 12211 112211 122566777777
Q ss_pred cCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 143 GGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.....+ -+.+.||..+|+|+|+
T Consensus 115 ~dp~~~---~~Av~EA~~l~IP~Ia 136 (196)
T TIGR01012 115 TDPRAD---HQALKEASEVGIPIVA 136 (196)
T ss_pred ECCccc---cHHHHHHHHcCCCEEE
Confidence 544333 3568999999999997
No 179
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=81.84 E-value=12 Score=25.92 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=33.6
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHH
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALS 203 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~ 203 (248)
.|++++.-.... .-|..+++.+. ...|+|+ +.. .+.....+.+..+..+++..+-+.++|.++|+
T Consensus 44 ~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 44 PDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDE-DDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESS-TSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ceEEEEEeeecc-ccccccccccccccccccEEEecCC-CCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 456565333321 12333444433 4788885 433 24334444443222345566679999988764
No 180
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=81.79 E-value=11 Score=31.53 Aligned_cols=82 Identities=13% Similarity=0.013 Sum_probs=51.6
Q ss_pred HHhhCCcEEECCCCCChHHHH-HHHHhcCCceEEEc-CCHHH--HHHHHHHhhhCHHHHHHHHHHHHHHHHHh-c----h
Q 043830 158 AAAAGCAVLTGPHIGHYSNMV-SAMQRLNPKSVLQV-SGKSE--LEEALSQLFSDARVLEAQQMAAKQAFCAL-S----S 228 (248)
Q Consensus 158 A~a~G~Pvi~~~~~~~~~~~~-~~~~~~g~g~~~~~-~~~~~--l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~----~ 228 (248)
-|+|+-.|+.... .+.+-. +.+...- -.+++ .|..+ |.++|.-+.++++..++++++|++++.++ . .
T Consensus 164 ~l~~~Svvl~~~~--~~~~~~~~~L~P~~--HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~~ 239 (256)
T smart00672 164 ILACDSVVLKVKP--EYYEFFSRGLQPWV--HYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDVY 239 (256)
T ss_pred HHhcCceEEEeCC--chhHHHHhcccCcc--ceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4677776665321 333322 2222211 12444 44444 99999999999999999999999999876 2 2
Q ss_pred hHHHHHHHHHHHHhh
Q 043830 229 GIVANVWNLLNFHVF 243 (248)
Q Consensus 229 ~~~~~~l~~~~~~~~ 243 (248)
....+.+..|.++++
T Consensus 240 ~Y~~~ll~eya~l~~ 254 (256)
T smart00672 240 DYMFHLLQEYAKLLK 254 (256)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444566666666654
No 181
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=81.14 E-value=13 Score=30.86 Aligned_cols=90 Identities=11% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE-ecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL-RSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
+.|..|+.-+..-...-.+++||..+.....+++.+...|-..+. ++.+. .|++. ....+..=|++||
T Consensus 56 ~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pG--------tlTN~---~~~~f~~P~llIV 124 (249)
T PTZ00254 56 EKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPG--------TFTNQ---IQKKFMEPRLLIV 124 (249)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCC--------CCCCc---cccccCCCCEEEE
Confidence 455555544433212234667787665445666777766654321 12111 11221 1123455667666
Q ss_pred cCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 143 GGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.....+ -+.+.||..+|+|||+
T Consensus 125 ~Dp~~d---~qAI~EA~~lnIPvIa 146 (249)
T PTZ00254 125 TDPRTD---HQAIREASYVNIPVIA 146 (249)
T ss_pred eCCCcc---hHHHHHHHHhCCCEEE
Confidence 443333 3568999999999997
No 182
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=81.12 E-value=6.3 Score=33.93 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~ 140 (248)
.+...+.+..+.+ .+.++++.|...++ +..++..... ... .+-+.+ +..++..+++.||++
T Consensus 193 ~e~~~~li~~l~~--~~~~ivl~G~~~e~-~~~~~i~~~~--~~~------------~~~l~g~~sL~el~ali~~a~l~ 255 (334)
T TIGR02195 193 HEHYAELAKRLID--QGYQVVLFGSAKDH-PAGNEIEALL--PGE------------LRNLAGETSLDEAVDLIALAKAV 255 (334)
T ss_pred HHHHHHHHHHHHH--CCCEEEEEEChhhH-HHHHHHHHhC--Ccc------------cccCCCCCCHHHHHHHHHhCCEE
Confidence 4556666665644 25678888874443 3333332221 110 111233 457999999999995
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++.. + |++ ==|.|+|+|+|+
T Consensus 256 -I~~D---S-Gp~--HlAaA~~~P~i~ 275 (334)
T TIGR02195 256 -VTND---S-GLM--HVAAALNRPLVA 275 (334)
T ss_pred -EeeC---C-HHH--HHHHHcCCCEEE
Confidence 5432 2 222 257899999996
No 183
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=80.91 E-value=3.1 Score=34.67 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHhhC--CEEEEcCccCCCCCCCCHHHHHhh--CCcEEE
Q 043830 129 ELRQLYKLT--PIAVIGGSFLPGLAGHNISEAAAA--GCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~a--d~~~v~~s~~e~~gg~~~lEA~a~--G~Pvi~ 167 (248)
+|.+....+ |+ +++.|-..|.....++++|+- ..|||.
T Consensus 97 ~L~eav~~~kPtv-LIG~S~~~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 97 SLLEAVKGAKPTV-LIGLSGQGGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp SHHHHHHCH--SE-EEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred CHHHHHHhcCCCE-EEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence 678888888 99 678775444323448999975 679997
No 184
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=80.90 E-value=3.5 Score=29.12 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHh
Q 043830 68 AVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQK 101 (248)
Q Consensus 68 ~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~ 101 (248)
..+.++.+.+|+.++|++|+..+...++...+.+
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~ 86 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSGQHDPEIYAEIAR 86 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHH
Confidence 3444566778999999999876655666666543
No 185
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=80.49 E-value=19 Score=29.31 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEc
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIG 143 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~ 143 (248)
+..++.|.+ ..+++-.+-+-..+ ...++.+++++.|....+-+. |.+ +.+.+..++...|++.+.
T Consensus 74 ~~~i~~fa~---agad~It~H~E~~~-~~~r~i~~Ik~~G~kaGv~ln-----P~T------p~~~i~~~l~~vD~VllM 138 (220)
T COG0036 74 DRYIEAFAK---AGADIITFHAEATE-HIHRTIQLIKELGVKAGLVLN-----PAT------PLEALEPVLDDVDLVLLM 138 (220)
T ss_pred HHHHHHHHH---hCCCEEEEEeccCc-CHHHHHHHHHHcCCeEEEEEC-----CCC------CHHHHHHHHhhCCEEEEE
Confidence 456777654 34676555555333 346788889999887433221 111 346789999999997765
Q ss_pred CccCCCCCCCCHHHHHh----------hCC-cEEECCCCCChHHHHHHHHhcCC
Q 043830 144 GSFLPGLAGHNISEAAA----------AGC-AVLTGPHIGHYSNMVSAMQRLNP 186 (248)
Q Consensus 144 ~s~~e~~gg~~~lEA~a----------~G~-Pvi~~~~~~~~~~~~~~~~~~g~ 186 (248)
|..+||||+.+++++. ... ++.+--++|-..+.+..+.+.|.
T Consensus 139 -sVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGa 191 (220)
T COG0036 139 -SVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGA 191 (220)
T ss_pred -eECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCC
Confidence 5568999998776532 111 45543233333456666666664
No 186
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=80.35 E-value=24 Score=27.04 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=38.9
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++.... ++..|...++.+....|||+-....+.......+..+..+++..+-+.+.|.+++..++.
T Consensus 48 ~dlvi~d~~~-~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 48 VQVCICDISM-PDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 5776663322 212244456666667888863222233333333322222455666789999999988775
No 187
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=80.08 E-value=4.9 Score=30.93 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHhhCCcEEECCCCCChHHHHHHH
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAAAGCAVLTGPHIGHYSNMVSAM 181 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~Pvi~~~~~~~~~~~~~~~ 181 (248)
.-.-+...||.+++.|. |.|.+ .+.|++..++||++-+..+.+....+.+
T Consensus 84 Rk~~m~~~sda~IvlpG---G~GTL~E~~~a~~~~kpv~~l~~~g~~~~~l~~~ 134 (159)
T TIGR00725 84 RNFILVRSADVVVSVGG---GYGTAIEILGAYALGGPVVVLRGTGGWTDRLSQV 134 (159)
T ss_pred HHHHHHHHCCEEEEcCC---chhHHHHHHHHHHcCCCEEEEECCCcchHHHHHH
Confidence 34556788999877643 22222 3789999999998755444555544443
No 188
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=80.00 E-value=17 Score=31.66 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=25.4
Q ss_pred ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 126 TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 126 ~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+..++..+++.||+ ||+.. + |++ ==|.|+|+|+|+
T Consensus 252 sL~el~ali~~a~l-~v~nD---S-Gp~--HlAaA~g~P~v~ 286 (352)
T PRK10422 252 TFPELGALIDHAQL-FIGVD---S-APA--HIAAAVNTPLIC 286 (352)
T ss_pred CHHHHHHHHHhCCE-EEecC---C-HHH--HHHHHcCCCEEE
Confidence 46799999999999 45442 2 222 247799999996
No 189
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=79.47 E-value=21 Score=31.90 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=58.1
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEE-EcChhH
Q 043830 51 QVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYV-VDTLGE 129 (248)
Q Consensus 51 ~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~~~~ 129 (248)
.||+.+ ...++...++..+.++++.+|++.+++.--.+--.+.+++...+. . .+.|+ .|...-
T Consensus 51 ~vWiHa-aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~-v--------------~h~YlP~D~~~~ 114 (419)
T COG1519 51 LVWIHA-ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDS-V--------------IHQYLPLDLPIA 114 (419)
T ss_pred eEEEEe-cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCC-e--------------EEEecCcCchHH
Confidence 366654 234566566667777888999998877654343323333332221 1 12222 233334
Q ss_pred HHHHHh--hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEEC
Q 043830 130 LRQLYK--LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168 (248)
Q Consensus 130 l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~ 168 (248)
+..+++ .-|++++.-| | .|++.+.|+-..|+|++.-
T Consensus 115 v~rFl~~~~P~l~Ii~Et--E-lWPnli~e~~~~~~p~~Lv 152 (419)
T COG1519 115 VRRFLRKWRPKLLIIMET--E-LWPNLINELKRRGIPLVLV 152 (419)
T ss_pred HHHHHHhcCCCEEEEEec--c-ccHHHHHHHHHcCCCEEEE
Confidence 444443 3566665333 4 6899999999999999973
No 190
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=79.34 E-value=7.7 Score=36.21 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=27.5
Q ss_pred HHHHHHhh--CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEE
Q 043830 129 ELRQLYKL--TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~--ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~ 167 (248)
.|.+.... +|+ +++.|-..|.....++++|+ +..|||.
T Consensus 392 ~L~e~v~~vkptv-LIG~S~~~g~Ft~evi~~Ma~~~~rPIIF 433 (581)
T PLN03129 392 SLLEAVKAIKPTV-LIGLSGVGGTFTKEVLEAMASLNERPIIF 433 (581)
T ss_pred CHHHHHhccCCCE-EEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 56667777 888 67777544322445899999 8899997
No 191
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=79.26 E-value=14 Score=32.91 Aligned_cols=84 Identities=13% Similarity=-0.001 Sum_probs=56.7
Q ss_pred HHHhhCCcEEECCCCCChHHH-HHHHHhcCCceEEEc-C--CHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-c----
Q 043830 157 EAAAAGCAVLTGPHIGHYSNM-VSAMQRLNPKSVLQV-S--GKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-S---- 227 (248)
Q Consensus 157 EA~a~G~Pvi~~~~~~~~~~~-~~~~~~~g~g~~~~~-~--~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~---- 227 (248)
=-|+||-.|+... ..+.+- ...+...- -.+++ . |-++|..+|..+.+|++..++++++|++++.++ .
T Consensus 232 ylL~c~SvVl~~~--~~~~e~f~~~L~P~v--HYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~ 307 (395)
T PF05686_consen 232 YLLACNSVVLKVK--SPYYEFFYRALKPWV--HYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDV 307 (395)
T ss_pred HHHcCCceEEEeC--CcHHHHHHhhhcccc--cEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3488898888632 244443 23333221 23444 3 789999999999999999999999999998766 2
Q ss_pred hhHHHHHHHHHHHHhhh
Q 043830 228 SGIVANVWNLLNFHVFR 244 (248)
Q Consensus 228 ~~~~~~~l~~~~~~~~~ 244 (248)
.....+.+..|.+++..
T Consensus 308 ~~Y~~~LL~eYa~l~~~ 324 (395)
T PF05686_consen 308 YCYWRRLLLEYAKLLRF 324 (395)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 23445666777766654
No 192
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.22 E-value=10 Score=29.53 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc-ChhHHHHHHhhCCEEEEc
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-TLGELRQLYKLTPIAVIG 143 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~y~~ad~~~v~ 143 (248)
..++.++.+.....+-+++|+|.|..-...+...+.+.|. .|++.+ +..++...+..||++|..
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~---------------~V~v~~r~~~~l~~~l~~aDiVIsa 94 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA---------------TVTVCHSKTKNLKEHTKQADIVIVA 94 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC---------------EEEEEECCchhHHHHHhhCCEEEEc
Confidence 3444444332223456899999875422335555555543 234443 336889999999997653
No 193
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=79.04 E-value=3.6 Score=36.00 Aligned_cols=80 Identities=20% Similarity=0.190 Sum_probs=45.0
Q ss_pred HHHHHHhhCCEEEEc-CccCCCCCCCCHHHHHhhCC-cEEECCCCCChHHHHHHHHhcCCceEEEc---CCHHHHHHHHH
Q 043830 129 ELRQLYKLTPIAVIG-GSFLPGLAGHNISEAAAAGC-AVLTGPHIGHYSNMVSAMQRLNPKSVLQV---SGKSELEEALS 203 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~-~s~~e~~gg~~~lEA~a~G~-Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~---~~~~~l~~~i~ 203 (248)
....+++.-...+.+ -|..++.-.-.+.+|+..|+ ||+.|+...+.. .+...+ ..+.+ +++++|++-|.
T Consensus 220 ~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~----~~~P~~--SfI~~~df~s~~~La~yl~ 293 (349)
T PF00852_consen 220 CKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYE----EFAPPN--SFIHVDDFKSPKELADYLK 293 (349)
T ss_dssp -HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHH----HHS-GG--GSEEGGGSSSHHHHHHHHH
T ss_pred cccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccc----cCCCCC--CccchhcCCCHHHHHHHHH
Confidence 344555555444442 22333321113689999998 999986544543 233333 34554 68999999999
Q ss_pred HhhhCHHHHHH
Q 043830 204 QLFSDARVLEA 214 (248)
Q Consensus 204 ~ll~~~~~~~~ 214 (248)
.|.+|+++..+
T Consensus 294 ~l~~n~~~Y~~ 304 (349)
T PF00852_consen 294 YLDKNDELYNK 304 (349)
T ss_dssp HHHT-HHHHH-
T ss_pred HHhcCHHHHhh
Confidence 99999988765
No 194
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=78.97 E-value=47 Score=29.54 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=51.1
Q ss_pred cEEEE-cCh-hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE-CCCCCChHHHHHHHHhcCCceEEEc--CC
Q 043830 120 NVYVV-DTL-GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQV--SG 194 (248)
Q Consensus 120 ~v~~~-~~~-~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~--~~ 194 (248)
+|.+. ++. .++...++.+|++ |+.- =|+++=||+.|+|+|+ +++ +-+....+++.-.+ +.... .+
T Consensus 267 ~i~~~~d~~~~~~~~~l~~~dl~-Vg~R------~HsaI~al~~g~p~i~i~Y~-~K~~~l~~~~gl~~--~~~~i~~~~ 336 (385)
T COG2327 267 EILVSSDEYAEELGGILAACDLI-VGMR------LHSAIMALAFGVPAIAIAYD-PKVRGLMQDLGLPG--FAIDIDPLD 336 (385)
T ss_pred ceEeecchHHHHHHHHhccCceE-Eeeh------hHHHHHHHhcCCCeEEEeec-HHHHHHHHHcCCCc--ccccCCCCc
Confidence 44443 333 4667789999994 5432 2778999999999996 332 23334444432222 33333 57
Q ss_pred HHHHHHHHHHhhh-CHHHHHH
Q 043830 195 KSELEEALSQLFS-DARVLEA 214 (248)
Q Consensus 195 ~~~l~~~i~~ll~-~~~~~~~ 214 (248)
.+.+.+...+.+. +++++++
T Consensus 337 ~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 337 AEILSAVVLERLTKLDELRER 357 (385)
T ss_pred hHHHHHHHHHHHhccHHHHhh
Confidence 7777777766665 5555544
No 195
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=78.81 E-value=2.2 Score=31.50 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHhhCCEEEE-cCccCCCCC--CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 131 RQLYKLTPIAVI-GGSFLPGLA--GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 131 ~~~y~~ad~~~v-~~s~~e~~g--g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
..++..||++++ ++-.++. | ....-=|.|+|+|.|+-... ...-....+. +. +...+.++++..+.+..++
T Consensus 67 ~~li~~aDvVVvrFGekYKQ-WNaAfDAg~a~AlgKplI~lh~~-~~~HpLKEvd-a~--A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYKQ-WNAAFDAGYAAALGKPLITLHPE-ELHHPLKEVD-AA--ALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHhhCCEEEEEechHHHH-HHHHhhHHHHHHcCCCeEEecch-hccccHHHHh-Hh--hHhhhCCHHHHHHHHHHHh
Confidence 567889999877 2322221 1 11234568999999984221 1111122221 11 3455688998888776654
No 196
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=78.81 E-value=8.9 Score=32.85 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=25.9
Q ss_pred ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 126 TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 126 ~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+..++..+++.||++ |+... |++ ==|.|+|+|+|+
T Consensus 243 sL~elaali~~a~l~-I~nDS----Gp~--HlA~A~g~p~va 277 (322)
T PRK10964 243 SLEQVARVLAGAKAV-VSVDT----GLS--HLTAALDRPNIT 277 (322)
T ss_pred CHHHHHHHHHhCCEE-EecCC----cHH--HHHHHhCCCEEE
Confidence 467999999999995 54422 222 358899999997
No 197
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=78.64 E-value=51 Score=29.81 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=41.4
Q ss_pred HHHHHhCCCeEEEEecC---CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE---cC
Q 043830 71 KVLMQKNPNLVTIIVPR---HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI---GG 144 (248)
Q Consensus 71 ~~l~~~~~~~~lvivG~---~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v---~~ 144 (248)
..+.+++|.+.++|.+- |.+-..++.+.++..+- ....|+++| |+
T Consensus 154 ~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~-----------------------------~~~~DvlIVaRGGG 204 (440)
T COG1570 154 HTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQ-----------------------------RGDVDVLIVARGGG 204 (440)
T ss_pred HHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhc-----------------------------cCCCCEEEEecCcc
Confidence 34677899999999874 55544666665544311 122777777 45
Q ss_pred ccCCCCCCCC----HHHHHhhCCcEEE
Q 043830 145 SFLPGLAGHN----ISEAAAAGCAVLT 167 (248)
Q Consensus 145 s~~e~~gg~~----~lEA~a~G~Pvi~ 167 (248)
|+.+ .|.-| +=...+|.+|||.
T Consensus 205 SiED-LW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 205 SIED-LWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred hHHH-HhccChHHHHHHHHhCCCCeEe
Confidence 5543 44433 2445789999996
No 198
>PRK12862 malic enzyme; Reviewed
Probab=78.22 E-value=6.4 Score=38.23 Aligned_cols=100 Identities=10% Similarity=0.028 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCce-EEe-cc--cCCCCCC------ccEEEEc--ChhHHH
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVV-ALR-SR--HEKLMPR------TNVYVVD--TLGELR 131 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~-~~~-~~--~~~~~~~------~~v~~~~--~~~~l~ 131 (248)
.-++.|++...+...+.++|+.|.|..- -.+.+++...|+.. .++ .+ |-..... .+..|.. ....|.
T Consensus 178 a~l~~a~~~~~~~~~~~~iv~~GaGaag-~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~ 256 (763)
T PRK12862 178 AALLNGLKLVGKDIEDVKLVASGAGAAA-LACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLA 256 (763)
T ss_pred HHHHHHHHHhCCChhhcEEEEEChhHHH-HHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHH
Confidence 3456676655555568899999987553 35556666678851 111 11 1100000 0000110 123678
Q ss_pred HHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 132 QLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 132 ~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+.+..+|+ |++.|- +|.....+++.|+ ..|||.
T Consensus 257 e~~~~~~v-~iG~s~-~g~~~~~~v~~M~-~~piif 289 (763)
T PRK12862 257 EVIEGADV-FLGLSA-AGVLKPEMVKKMA-PRPLIF 289 (763)
T ss_pred HHHcCCCE-EEEcCC-CCCCCHHHHHHhc-cCCEEE
Confidence 88888999 678775 4422344799999 899997
No 199
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.02 E-value=10 Score=32.77 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~ 140 (248)
.+...+....+.++. .+++++|+. +..+..++.....+-. +.+.+ +..++..+.+.||+
T Consensus 194 ~e~~~~l~~~l~~~~--~~Vvl~g~~-~e~e~~~~i~~~~~~~---------------~~l~~k~sL~e~~~li~~a~l- 254 (334)
T COG0859 194 LEHYAELAELLIAKG--YQVVLFGGP-DEEERAEEIAKGLPNA---------------VILAGKTSLEELAALIAGADL- 254 (334)
T ss_pred HHHHHHHHHHHHHCC--CEEEEecCh-HHHHHHHHHHHhcCCc---------------cccCCCCCHHHHHHHHhcCCE-
Confidence 345555555566654 778888876 4434444544443211 00222 45789999999999
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+++... |. .==|.|.|+|+|+
T Consensus 255 ~I~~DS----g~--~HlAaA~~~P~I~ 275 (334)
T COG0859 255 VIGNDS----GP--MHLAAALGTPTIA 275 (334)
T ss_pred EEccCC----hH--HHHHHHcCCCEEE
Confidence 465432 12 2358999999997
No 200
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=77.54 E-value=45 Score=28.59 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=24.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecC---CCCCHHHHHHHHH
Q 043830 52 VWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPR---HPQHGKEIAQKLQ 100 (248)
Q Consensus 52 v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~---~~~~~~~l~~~~~ 100 (248)
+-++.|.....+..++..+ .+++|.+.+.+.+. |..-..++.+.++
T Consensus 17 I~vITs~~gAa~~D~~~~~---~~r~~~~~~~~~p~~vQG~~A~~~I~~al~ 65 (319)
T PF02601_consen 17 IAVITSPTGAAIQDFLRTL---KRRNPIVEIILYPASVQGEGAAASIVSALR 65 (319)
T ss_pred EEEEeCCchHHHHHHHHHH---HHhCCCcEEEEEeccccccchHHHHHHHHH
Confidence 4444443333445556554 44678788888874 3333344554444
No 201
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=76.96 E-value=6.2 Score=32.21 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~ 140 (248)
.+...+.+..+.+.+ ..++++|...+...++.+.+.+. +. ...+.+.+ .+.++..+++.||++
T Consensus 123 ~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~l~e~~ali~~a~~~ 187 (247)
T PF01075_consen 123 AEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAG-LQ------------NPVINLAGKTSLRELAALISRADLV 187 (247)
T ss_dssp HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTT-HT------------TTTEEETTTS-HHHHHHHHHTSSEE
T ss_pred HHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHh-cc------------cceEeecCCCCHHHHHHHHhcCCEE
Confidence 445566666665443 67788887544223333333221 11 01122333 357899999999995
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+++ ++ |+ .==|.|+|+|+|+
T Consensus 188 -I~~---Dt-g~--~HlA~a~~~p~v~ 207 (247)
T PF01075_consen 188 -IGN---DT-GP--MHLAAALGTPTVA 207 (247)
T ss_dssp -EEE---SS-HH--HHHHHHTT--EEE
T ss_pred -Eec---CC-hH--HHHHHHHhCCEEE
Confidence 443 22 11 2358899999997
No 202
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=76.65 E-value=18 Score=29.32 Aligned_cols=163 Identities=11% Similarity=0.106 Sum_probs=81.9
Q ss_pred CeEEEEeCCCcchHHHHHHHHHH-HHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 50 RQVWMASSIHRGEEKVMLAVHKV-LMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 50 ~~v~l~~~~~~~~~~~ll~a~~~-l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
.|++++|...-+. ..|+.|+.. +.+..|+.+++-+.. .+....+.+.+++. ...
T Consensus 35 ~~l~l~G~~G~GK-THLL~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~~-----------------------~~~ 89 (219)
T PF00308_consen 35 NPLFLYGPSGLGK-THLLQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRDG-----------------------EIE 89 (219)
T ss_dssp SEEEEEESTTSSH-HHHHHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHTT-----------------------SHH
T ss_pred CceEEECCCCCCH-HHHHHHHHHHHHhccccccceeecH-HHHHHHHHHHHHcc-----------------------cch
Confidence 4788887554332 346777654 555678877666653 12223344443331 123
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCC---------CHHHHHhhCCcEEECCC--C---CChH-HHHHHHHhcCCceEEEc-
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGH---------NISEAAAAGCAVLTGPH--I---GHYS-NMVSAMQRLNPKSVLQV- 192 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~---------~~lEA~a~G~Pvi~~~~--~---~~~~-~~~~~~~~~g~g~~~~~- 192 (248)
++...|..+|++++ -.+.. +.+. .+-.....|+++|++.+ + ..+. .....+. . |..+..
T Consensus 90 ~~~~~~~~~DlL~i-DDi~~-l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~-~--Gl~~~l~ 164 (219)
T PF00308_consen 90 EFKDRLRSADLLII-DDIQF-LAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS-W--GLVVELQ 164 (219)
T ss_dssp HHHHHHCTSSEEEE-ETGGG-GTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH-C--SEEEEE-
T ss_pred hhhhhhhcCCEEEE-ecchh-hcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh-h--cchhhcC
Confidence 66777888998766 11111 1111 12334578999997321 1 1222 3444442 3 355554
Q ss_pred -CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhh
Q 043830 193 -SGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 193 -~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (248)
.|.+...+.+.+.+.+. .-.+.+....++.+..+.........+.++...
T Consensus 165 ~pd~~~r~~il~~~a~~~--~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 165 PPDDEDRRRILQKKAKER--GIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp ---HHHHHHHHHHHHHHT--T--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 56677777776666522 122555555566554455555566666655443
No 203
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=76.47 E-value=16 Score=26.95 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=38.3
Q ss_pred EEEecCC---CCCHHHHHHHHHhcCCceEEecccC--CCCCCccEEE--EcC--hhHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRH---PQHGKEIAQKLQKEGEVVALRSRHE--KLMPRTNVYV--VDT--LGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~---~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~v~~--~~~--~~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+ ..-.+++.++++++|++......+. .+ ++..-|+ .+. .....++++.||++++.++
T Consensus 15 ~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~-~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~ 86 (137)
T PF00205_consen 15 VILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIP-EDHPLFLGYLGLFGSPAANEALEQADLVLAIGT 86 (137)
T ss_dssp EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSST-TTSTTEEEESCGGSCHHHHHHHHHSSEEEEESS
T ss_pred EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccC-CCCchhcccCCccCCHHHHHHhcCCCEEEEECC
Confidence 6778864 2345889999999999865544322 22 1122222 222 2467888999999888554
No 204
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=76.41 E-value=25 Score=29.16 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=22.5
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI 171 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~ 171 (248)
=|++||--...| -+.+.||--+|+|||+--++
T Consensus 157 Pd~l~ViDp~~e---~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKE---KIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHh---HHHHHHHHHcCCCEEEEecC
Confidence 677777443333 25689999999999984344
No 205
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=75.33 E-value=38 Score=26.59 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=42.8
Q ss_pred EEcCh-hHHHHHHhhCCEEEEcCccCCCCCCCC-HHHHHhh------CCcEEECCCCCChHHHH---HHHHhcCC-----
Q 043830 123 VVDTL-GELRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAAA------GCAVLTGPHIGHYSNMV---SAMQRLNP----- 186 (248)
Q Consensus 123 ~~~~~-~~l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a~------G~Pvi~~~~~~~~~~~~---~~~~~~g~----- 186 (248)
.+..+ .....+...||.+++.|. |+|-+. ++|+++. .+||++-+..+-+.... +.+.+.|-
T Consensus 82 ~~~~~~~Rk~~m~~~sda~I~lPG---G~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~ 158 (178)
T TIGR00730 82 EVNGMHERKAMMAELADAFIAMPG---GFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESH 158 (178)
T ss_pred EECCHHHHHHHHHHhCCEEEEcCC---CcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHH
Confidence 34443 345677888999877542 222222 5777764 99999854333343333 23333320
Q ss_pred -ceEEEcCCHHHHHHHHH
Q 043830 187 -KSVLQVSGKSELEEALS 203 (248)
Q Consensus 187 -g~~~~~~~~~~l~~~i~ 203 (248)
-.+..++|++++.+.|.
T Consensus 159 ~~~~~~~d~~~e~~~~i~ 176 (178)
T TIGR00730 159 LKLIHVVSRPDELIEQVQ 176 (178)
T ss_pred cCcEEEcCCHHHHHHHHH
Confidence 02344578888777664
No 206
>PRK12861 malic enzyme; Reviewed
Probab=75.12 E-value=7.1 Score=37.80 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCc--eEEecc--cCCCC--C----CccEEEEc--ChhHHHH
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEV--VALRSR--HEKLM--P----RTNVYVVD--TLGELRQ 132 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~--~~~~~~--~~~~~--~----~~~v~~~~--~~~~l~~ 132 (248)
-++.|++...+...+.++|+.|.|..- -.+.+++...|+. .....+ |-... + ..+..|.. ....|.+
T Consensus 175 ~llnal~~~gk~l~d~~iv~~GAGaAg-~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~e 253 (764)
T PRK12861 175 AFINGLKVVGKSIKEVKVVTSGAGAAA-LACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAE 253 (764)
T ss_pred HHHHHHHHhCCChhHcEEEEECHhHHH-HHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHH
Confidence 456666655555568899999987653 3455666667874 111111 11000 0 00000110 1246888
Q ss_pred HHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 133 LYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 133 ~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.+..+|+ |+|.|- +|.....++++|+- .|||.
T Consensus 254 ai~~adv-liG~S~-~g~ft~e~v~~Ma~-~PIIF 285 (764)
T PRK12861 254 VIGGADV-FLGLSA-GGVLKAEMLKAMAA-RPLIL 285 (764)
T ss_pred HHhcCCE-EEEcCC-CCCCCHHHHHHhcc-CCEEE
Confidence 8899999 678774 43223347999987 89997
No 207
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=74.98 E-value=57 Score=28.49 Aligned_cols=139 Identities=9% Similarity=0.032 Sum_probs=66.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHH----HHHhhCCEEEEcCccCCCCCCCC
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELR----QLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~----~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
+-+++|+|.|..- .-..+.+.+.|........- + +-.-+++++. .+...+|++|.++|-.....+..
T Consensus 174 ~k~vLvIGaGem~-~l~a~~L~~~g~~~i~v~nR------t--~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i 244 (338)
T PRK00676 174 KASLLFIGYSEIN-RKVAYYLQRQGYSRITFCSR------Q--QLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHL 244 (338)
T ss_pred CCEEEEEcccHHH-HHHHHHHHHcCCCEEEEEcC------C--ccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCcee
Confidence 4589999987543 34444455666642221110 0 0011234443 56678999876432111101333
Q ss_pred HHHHHhhCCc--EEE---CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchh
Q 043830 155 ISEAAAAGCA--VLT---GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSG 229 (248)
Q Consensus 155 ~lEA~a~G~P--vi~---~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 229 (248)
..|-+. +.+ .++ -| .+... +... .+ .. .-|.++|.+.+.+ |-..|++....+...+ +.
T Consensus 245 ~~~~~~-~~~~r~~iDLAvP--RdId~-v~~~--~~--v~--Ly~iDdL~~i~~~---n~~~R~~~~~~ae~iI----~~ 307 (338)
T PRK00676 245 SWESLA-DIPDRIVFDFNVP--RTFPW-SETP--FP--HR--YLDMDFISEWVQK---HLQCRKEVNNKHKLSL----RE 307 (338)
T ss_pred eHHHHh-hccCcEEEEecCC--CCCcc-cccc--CC--cE--EEEhHHHHHHHHH---HHHHHHHHHHHHHHHH----HH
Confidence 344433 232 333 22 23322 1111 11 21 2356666555543 3345555555554443 57
Q ss_pred HHHHHHHHHHHHhh
Q 043830 230 IVANVWNLLNFHVF 243 (248)
Q Consensus 230 ~~~~~l~~~~~~~~ 243 (248)
++.++|+.|++-+.
T Consensus 308 ~~~~~~~~~~~~~~ 321 (338)
T PRK00676 308 AAYKQWESYEKKLS 321 (338)
T ss_pred HHHHHHHHHHHHHh
Confidence 88889999987665
No 208
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=74.97 E-value=2.8 Score=32.33 Aligned_cols=65 Identities=23% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHHHhh-CCEEEEc--CccC-CCCCCC--CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHH
Q 043830 130 LRQLYKL-TPIAVIG--GSFL-PGLAGH--NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSEL 198 (248)
Q Consensus 130 l~~~y~~-ad~~~v~--~s~~-e~~gg~--~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l 198 (248)
+...+.. +|++|+. +-.. +| +|+ .+.+|++.|+||+++-...++ +.+..+. .|.+ ...+.|.++|
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G-~Glr~~i~~A~~~giPVLt~V~~~~l-~~W~~Fa-gg~a-~~L~~d~~al 156 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEG-RGLRDEIAAALAAGIPVLTAVPPRNL-EAWRAFA-GGLA-TELPPDREAL 156 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcC-CCHHHHHHHHHHCCCCEEEEECHHHH-HHHHHhc-CCcc-ccCCCCHHHH
Confidence 4444444 8997762 2221 34 344 378999999999986443333 3344442 3322 2334566555
No 209
>PRK13529 malate dehydrogenase; Provisional
Probab=74.04 E-value=39 Score=31.59 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHhhC--CEEEEcCccCCCCCCCCHHHHHhh--CCcEEE
Q 043830 129 ELRQLYKLT--PIAVIGGSFLPGLAGHNISEAAAA--GCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~a--d~~~v~~s~~e~~gg~~~lEA~a~--G~Pvi~ 167 (248)
.|.+....+ |+ ++|.|-..|.....++++|+. ..|||.
T Consensus 373 ~L~e~v~~~kPtv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 414 (563)
T PRK13529 373 SLLEVVRNVKPTV-LIGVSGQPGAFTEEIVKEMAAHCERPIIF 414 (563)
T ss_pred CHHHHHhccCCCE-EEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 466777777 88 678776444324458999986 679997
No 210
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=73.60 E-value=38 Score=31.64 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHhhC--CEEEEcCccCCCCCCCCHHHHHhh--CCcEEE
Q 043830 129 ELRQLYKLT--PIAVIGGSFLPGLAGHNISEAAAA--GCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~a--d~~~v~~s~~e~~gg~~~lEA~a~--G~Pvi~ 167 (248)
.|.+....+ |+ ++|.|-..|.....++++|+- ..|||.
T Consensus 372 ~L~e~v~~~KPtv-LIG~S~~~g~Ft~evv~~Ma~~~~rPIIF 413 (559)
T PTZ00317 372 TLEDVVRFVKPTA-LLGLSGVGGVFTEEVVKTMASNVERPIIF 413 (559)
T ss_pred CHHHHHhccCCCE-EEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 567777777 88 678776544324458999996 789997
No 211
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=73.53 E-value=14 Score=32.12 Aligned_cols=84 Identities=10% Similarity=0.005 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAV 141 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~ 141 (248)
+...+..+.+.. .+..+++.|+..++ +..++.....+-... ...+-+.+ +..++..+++.||++
T Consensus 200 e~~a~l~~~l~~--~~~~vvl~Gg~~e~-~~~~~i~~~~~~~~~----------~~~~~l~g~~sL~el~ali~~a~l~- 265 (348)
T PRK10916 200 YHYAELAQQLID--EGYQVVLFGSAKDH-EAGNEILAALNTEQQ----------AWCRNLAGETQLEQAVILIAACKAI- 265 (348)
T ss_pred HHHHHHHHHHHH--CCCeEEEEeCHHhH-HHHHHHHHhcccccc----------cceeeccCCCCHHHHHHHHHhCCEE-
Confidence 445555555542 36778888864443 333443333211100 00122333 467999999999994
Q ss_pred EcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 142 IGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 142 v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++.. + |++ ==|.|+|+|+|+
T Consensus 266 I~nD---T-Gp~--HlAaA~g~P~va 285 (348)
T PRK10916 266 VTND---S-GLM--HVAAALNRPLVA 285 (348)
T ss_pred EecC---C-hHH--HHHHHhCCCEEE
Confidence 5442 2 232 258899999996
No 212
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=71.65 E-value=13 Score=36.05 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCc--eEEecc--cCCCCC------CccEEEEc--ChhHHHH
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEV--VALRSR--HEKLMP------RTNVYVVD--TLGELRQ 132 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~--~~~~~~--~~~~~~------~~~v~~~~--~~~~l~~ 132 (248)
-++.|++...+...+.++|+.|.|..- -.+.+++...|+. ....++ |-.... ..+-.|.. ....|.+
T Consensus 171 ~l~na~~~~~~~~~~~~iv~~GaGaag-~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~ 249 (752)
T PRK07232 171 ALLNALELVGKKIEDVKIVVSGAGAAA-IACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAE 249 (752)
T ss_pred HHHHHHHHhCCChhhcEEEEECccHHH-HHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHH
Confidence 456666655555568899999987553 3455666667884 221111 111000 00001111 1246888
Q ss_pred HHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 133 LYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 133 ~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.+..+|+ |++.|- +|.....+++.|+ ..|||.
T Consensus 250 ~i~~~~v-~iG~s~-~g~~~~~~v~~M~-~~piif 281 (752)
T PRK07232 250 AIEGADV-FLGLSA-AGVLTPEMVKSMA-DNPIIF 281 (752)
T ss_pred HHcCCCE-EEEcCC-CCCCCHHHHHHhc-cCCEEE
Confidence 8899999 678775 4322334799998 589997
No 213
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=69.95 E-value=39 Score=27.22 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE-ecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL-RSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
..|..|+.-+.... .-.+++||..+.....+++.+...|-..+. ++.+. .+++.. ...|..=|++++
T Consensus 53 ~~L~~A~~~i~~~~-~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG--------~LTN~~---~~~~~~Pdliiv 120 (204)
T PRK04020 53 ERIRIAAKFLSRYE-PEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPG--------TLTNPS---LKGYIEPDVVVV 120 (204)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCC--------cCcCcc---hhccCCCCEEEE
Confidence 45566665554433 346788887665445666777776654321 12211 122211 123446677777
Q ss_pred cCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 143 GGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.....+ -+.+.||..+|+|+|+
T Consensus 121 ~dp~~~---~~AI~EA~kl~IP~Ia 142 (204)
T PRK04020 121 TDPRGD---AQAVKEAIEVGIPVVA 142 (204)
T ss_pred ECCccc---HHHHHHHHHhCCCEEE
Confidence 544333 3568999999999997
No 214
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=69.81 E-value=65 Score=26.97 Aligned_cols=141 Identities=10% Similarity=0.095 Sum_probs=73.2
Q ss_pred HHHHhcCCCeEEEEeC--C-CcchHHHHHHHHHHHHHhCCCeEEEEecCCC-CCHHHHHHHHHhcCCceEEecccCCCCC
Q 043830 42 DLKASLAHRQVWMASS--I-HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHP-QHGKEIAQKLQKEGEVVALRSRHEKLMP 117 (248)
Q Consensus 42 ~~r~~~~~~~v~l~~~--~-~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 117 (248)
.+|+...+.|+++.+= . ...+.+.+++.+... .+.=+|+++-| ++.+++.+.+.+.|+..
T Consensus 80 ~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~a-----GvdGlIipDLP~ee~~~~~~~~~~~gl~~----------- 143 (259)
T PF00290_consen 80 EIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEA-----GVDGLIIPDLPPEESEELREAAKKHGLDL----------- 143 (259)
T ss_dssp HHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHH-----TEEEEEETTSBGGGHHHHHHHHHHTT-EE-----------
T ss_pred HHhccCCCCCEEEEeeccHHhccchHHHHHHHHHc-----CCCEEEEcCCChHHHHHHHHHHHHcCCeE-----------
Confidence 3443445677776541 1 122455566655432 46678888754 34577888889999863
Q ss_pred CccEEEEcC---hhHHHHHHhhCCEEEEcCccCCCCCCCC-H---HHH------HhhCCcEEECCCCCChHHHHHHHHhc
Q 043830 118 RTNVYVVDT---LGELRQLYKLTPIAVIGGSFLPGLAGHN-I---SEA------AAAGCAVLTGPHIGHYSNMVSAMQRL 184 (248)
Q Consensus 118 ~~~v~~~~~---~~~l~~~y~~ad~~~v~~s~~e~~gg~~-~---lEA------~a~G~Pvi~~~~~~~~~~~~~~~~~~ 184 (248)
|.|+-+ ...+..+-+.++-++-.-|..-..|..+ + ++. ..+.+||++|=.. +.++.+..+..
T Consensus 144 ---I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI-~~~e~~~~~~~- 218 (259)
T PF00290_consen 144 ---IPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGI-STPEQAKKLAA- 218 (259)
T ss_dssp ---EEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS--SHHHHHHHHT-
T ss_pred ---EEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCC-CCHHHHHHHHc-
Confidence 344332 3567777777665222223321112222 1 111 3458999997555 33455555553
Q ss_pred CCceEEEcCCHHHHHHHHHHhh
Q 043830 185 NPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 185 g~g~~~~~~~~~~l~~~i~~ll 206 (248)
+. -++.+++ ++.+.+..-.
T Consensus 219 ~a-DGvIVGS--a~v~~i~~~~ 237 (259)
T PF00290_consen 219 GA-DGVIVGS--AFVKIIEENG 237 (259)
T ss_dssp TS-SEEEESH--HHHHHHHHTC
T ss_pred cC-CEEEECH--HHHHHHHHcc
Confidence 32 4566666 7777776533
No 215
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=68.47 E-value=24 Score=30.45 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccE-EEEc--ChhHHHHHHhhCCE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNV-YVVD--TLGELRQLYKLTPI 139 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v-~~~~--~~~~l~~~y~~ad~ 139 (248)
.+...+.++.+.+. +..++++|+..+...++.+.+.+. ... .++ .+.+ +..++..+++.||+
T Consensus 199 ~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~-~~~------------~~~~~l~g~~sL~el~ali~~a~l 263 (344)
T TIGR02201 199 NDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQG-CQT------------PRVTSLAGKLTLPQLAALIDHARL 263 (344)
T ss_pred HHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhh-CCC------------CcccccCCCCCHHHHHHHHHhCCE
Confidence 34555555555442 567888885322212223333221 110 111 2334 45799999999999
Q ss_pred EEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 140 AVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 140 ~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+ |+. ++ |++ ==|.|+|+|+|+
T Consensus 264 ~-Vs~---DS-Gp~--HlAaA~g~p~v~ 284 (344)
T TIGR02201 264 F-IGV---DS-VPM--HMAAALGTPLVA 284 (344)
T ss_pred E-Eec---CC-HHH--HHHHHcCCCEEE
Confidence 4 544 22 222 358899999996
No 216
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=67.68 E-value=59 Score=25.67 Aligned_cols=115 Identities=18% Similarity=0.110 Sum_probs=57.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCC--CCCCC
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPG--LAGHN 154 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~--~gg~~ 154 (248)
+++++|+.+++.....++..+...+... .+...+...+....+. ..|++++...+... ..|..
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~ 69 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVN-------------VVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGIT 69 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCE-------------EEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHH
Confidence 3567777776654455666654432110 1222233333433333 36887764333210 02445
Q ss_pred HHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 155 ISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 155 ~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+++.+. -++|||+-....+. .......+.|. |++..+.++++|..+|..++.
T Consensus 70 ~~~~l~~~~~~~~iIvls~~~~~-~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 70 LIKYIKRHFPSLSIIVLTMNNNP-AILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred HHHHHHHHCCCCcEEEEEecCCH-HHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 555543 34677752222232 22333333342 355556789999999988775
No 217
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=66.35 E-value=24 Score=27.87 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=47.3
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEE-EcChh
Q 043830 50 RQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYV-VDTLG 128 (248)
Q Consensus 50 ~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~~~ 128 (248)
..+|+.+. ..++...+...+..+++++|+..+++-...+.-.+...+.... .+ ..+|+ .|...
T Consensus 22 ~~iWiHa~-SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v--------------~~~~~P~D~~~ 85 (186)
T PF04413_consen 22 PLIWIHAA-SVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RV--------------DVQYLPLDFPW 85 (186)
T ss_dssp T-EEEE-S-SHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G---------------SEEE---SSHH
T ss_pred CcEEEEEC-CHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-Ce--------------EEEEeCccCHH
Confidence 45777653 3567777777778888888999988876544432333332211 11 12232 24445
Q ss_pred HHHHHHhhC--CEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 129 ELRQLYKLT--PIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~a--d~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.+..++..- |++++..+ | +|+.-+.++-..|+|++.
T Consensus 86 ~~~rfl~~~~P~~~i~~Et--E-lWPnll~~a~~~~ip~~L 123 (186)
T PF04413_consen 86 AVRRFLDHWRPDLLIWVET--E-LWPNLLREAKRRGIPVVL 123 (186)
T ss_dssp HHHHHHHHH--SEEEEES-------HHHHHH-----S-EEE
T ss_pred HHHHHHHHhCCCEEEEEcc--c-cCHHHHHHHhhcCCCEEE
Confidence 566666653 67665332 3 566668899999999997
No 218
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=66.16 E-value=4.6 Score=29.92 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=38.7
Q ss_pred HHHHHhhCCEEEE-cCccCCCCC--CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 130 LRQLYKLTPIAVI-GGSFLPGLA--GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 130 l~~~y~~ad~~~v-~~s~~e~~g--g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
-..++..||++++ ++-.++. | ....-=|.|+|+|.|+-... ...-....+. +. +...+.++++..+.+..++
T Consensus 69 T~~li~~aDvvVvrFGekYKQ-WNaAfDAg~aaAlgKplI~lh~~-~~~HpLKEvd-aa--A~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 69 TRKLIEKADVVIALFGEKYKQ-WNAAFDAGYAAALGKPLIILRPE-ELIHPLKEVD-NK--AQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHHHhhCCEEEEEechHHHH-HHHHhhHHHHHHcCCCeEEecch-hccccHHHHh-HH--HHHHhcCHHHHHHHHHHhh
Confidence 3567899999877 2322221 1 11223468999999973221 1111122221 11 2344578888887776544
No 219
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=66.15 E-value=1e+02 Score=27.78 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.2
Q ss_pred hhHHHHHHhhCCEEEEcCc
Q 043830 127 LGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 127 ~~~l~~~y~~ad~~~v~~s 145 (248)
+.++..++..+|++|.++|
T Consensus 229 l~el~~~l~~~DvVissTs 247 (414)
T COG0373 229 LEELLEALAEADVVISSTS 247 (414)
T ss_pred HHHHHHhhhhCCEEEEecC
Confidence 4689999999999876443
No 220
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=65.83 E-value=38 Score=25.44 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=35.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEEc
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v~ 143 (248)
..-+++|+|++......+..++.+.|.. |...+. ..++.+..+.||++++.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gat---------------V~~~~~~t~~l~~~v~~ADIVvsA 78 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGAT---------------VYSCDWKTIQLQSKVHDADVVVVG 78 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE---------------EEEeCCCCcCHHHHHhhCCEEEEe
Confidence 3457889999888778888888766553 233331 13688899999997653
No 221
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=65.50 E-value=21 Score=24.92 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCceEEecccCCCCCCccEEEE-cChhHHHHHH--hhCCEEEEcCccCCCCCCCCHHHHHhhCCcEE
Q 043830 92 GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVV-DTLGELRQLY--KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVL 166 (248)
Q Consensus 92 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~~~~~l~~~y--~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi 166 (248)
.++++++++..|+...-........++...||. |...++..+. ..+|++++...+.+. +-.++-+++ |++|+
T Consensus 10 l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~-Q~rNLe~~~--~~~V~ 84 (95)
T PF13167_consen 10 LEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPS-QQRNLEKAL--GVKVI 84 (95)
T ss_pred HHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHH-HHHHHHHHH--CCeee
Confidence 477888888888874432222111123344443 3345665554 357777665444432 223444433 88887
No 222
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=65.19 E-value=19 Score=26.62 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=43.4
Q ss_pred EEEEcCh-hHHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHh------hCC-cEEECCCCCChHHHHHHH---HhcCC--
Q 043830 121 VYVVDTL-GELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAA------AGC-AVLTGPHIGHYSNMVSAM---QRLNP-- 186 (248)
Q Consensus 121 v~~~~~~-~~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a------~G~-Pvi~~~~~~~~~~~~~~~---~~~g~-- 186 (248)
.+.+.++ .....+...||.+++.|. |+|-+ -++|+++ ..+ |||.-+..+-+....+.+ .+.|.
T Consensus 37 ~~~~~~~~~Rk~~m~~~sda~I~lPG---G~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~ 113 (133)
T PF03641_consen 37 LIIVDDMFERKEIMIESSDAFIALPG---GIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFIS 113 (133)
T ss_dssp EEEESSHHHHHHHHHHHESEEEEES----SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSS
T ss_pred eeEeCChHHHHHHHHHhCCEEEEEec---CCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCC
Confidence 3444444 345667889999777531 11111 1577776 445 999854333455555443 33331
Q ss_pred ----ceEEEcCCHHHHHHHH
Q 043830 187 ----KSVLQVSGKSELEEAL 202 (248)
Q Consensus 187 ----g~~~~~~~~~~l~~~i 202 (248)
..+..++|++++.+.|
T Consensus 114 ~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 114 PDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp HHHHCCEEEESSHHHHHHHH
T ss_pred HHHCCeEEEeCCHHHHHhhC
Confidence 1345568888887654
No 223
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=63.73 E-value=82 Score=28.44 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=25.5
Q ss_pred hHHHHHHhhCCEEEEc-Ccc-CCCCCCCC----HHHHHhhCCcEEE
Q 043830 128 GELRQLYKLTPIAVIG-GSF-LPGLAGHN----ISEAAAAGCAVLT 167 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~-~s~-~e~~gg~~----~lEA~a~G~Pvi~ 167 (248)
.++...++.||+++.+ +|+ .+. .|.. ++-|..+|+|++.
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~-y~~~~~~y~l~A~l~gkpv~l 153 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDL-YGVPQFEHALCAFMAKKPLYM 153 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccC-cccHHHHHHHHHHHcCCCEEE
Confidence 4666779999997763 333 332 2321 3467889999997
No 224
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=63.56 E-value=68 Score=24.89 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=34.6
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++...+ ++..|..+++-+. ...|+|+-....+.......+..+..+++..+-+.++|...+..++.
T Consensus 45 ~d~illd~~~-~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 45 YSLVVLDLGL-PDEDGLHLLRRWRQKKYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred CCEEEEECCC-CCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 5676654333 2122333333332 35688763222233333333322222355566788888888877664
No 225
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=62.09 E-value=67 Score=27.04 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEE
Q 043830 62 EEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAV 141 (248)
Q Consensus 62 ~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~ 141 (248)
+.+.+++++ +.+..++..++++..+|++. .+..|+....+. ...++...+..+|+++
T Consensus 13 GDe~~l~~~--l~~l~~~~~~~v~s~~p~~~------~~~~~v~~~~r~---------------~~~~~~~~l~~~D~vI 69 (298)
T TIGR03609 13 GDEALLAAL--LRELPPGVEPTVLSNDPAET------AKLYGVEAVNRR---------------SLLAVLRALRRADVVI 69 (298)
T ss_pred chHHHHHHH--HHhcCCCCeEEEecCChHHH------HhhcCceEEccC---------------CHHHHHHHHHHCCEEE
Confidence 346777776 33335778888888777542 133355432111 1236677788999977
Q ss_pred EcC-ccC-CCCCCCCH-------HHHHhhCCcEEE
Q 043830 142 IGG-SFL-PGLAGHNI-------SEAAAAGCAVLT 167 (248)
Q Consensus 142 v~~-s~~-e~~gg~~~-------lEA~a~G~Pvi~ 167 (248)
+++ ++. +..+...+ .-|..+|+|++.
T Consensus 70 ~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~ 104 (298)
T TIGR03609 70 WGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVIL 104 (298)
T ss_pred ECCcccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 643 322 21111111 345668999986
No 226
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=61.48 E-value=40 Score=30.28 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh------------hHHHH
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL------------GELRQ 132 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~------------~~l~~ 132 (248)
-++.|++...+...+.++|+.|.|-.- -.+.+++...|+... +||++|.. .....
T Consensus 185 ~llnalk~~gk~l~d~kiv~~GAGAAg-iaia~~l~~~g~~~~------------~i~~~D~~G~l~~~r~~~~~~~~k~ 251 (432)
T COG0281 185 ALLNALKLTGKKLKDQKIVINGAGAAG-IAIADLLVAAGVKEE------------NIFVVDRKGLLYDGREDLTMNQKKY 251 (432)
T ss_pred HHHHHHHHhCCCccceEEEEeCCcHHH-HHHHHHHHHhCCCcc------------cEEEEecCCcccCCCcccccchHHH
Confidence 567777666666678999999987654 456677777787621 22222211 11111
Q ss_pred --------------HHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 133 --------------LYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 133 --------------~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.+.-+|+ |++.|-. |......++.|+-. |+|.
T Consensus 252 ~~a~~~~~~~~~~~~~~~adv-~iG~S~~-G~~t~e~V~~Ma~~-PiIf 297 (432)
T COG0281 252 AKAIEDTGERTLDLALAGADV-LIGVSGV-GAFTEEMVKEMAKH-PIIF 297 (432)
T ss_pred HHHHhhhccccccccccCCCE-EEEcCCC-CCcCHHHHHHhccC-CEEe
Confidence 3345788 6776653 32123479999988 9996
No 227
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=61.29 E-value=44 Score=27.22 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=17.7
Q ss_pred HHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 130 LRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 130 l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+.+.+..+|++ ++.|- .|..+...++.|+ ..|+|.
T Consensus 91 l~~~l~~~dvl-IgaT~-~G~~~~~~l~~m~-~~~ivf 125 (226)
T cd05311 91 LKEALKGADVF-IGVSR-PGVVKKEMIKKMA-KDPIVF 125 (226)
T ss_pred HHHHHhcCCEE-EeCCC-CCCCCHHHHHhhC-CCCEEE
Confidence 44445667773 44442 3322233566665 456665
No 228
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=60.96 E-value=1.3e+02 Score=27.23 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEecC---CCCCHHHHHHHHH
Q 043830 62 EEKVMLAVHKVLMQKNPNLVTIIVPR---HPQHGKEIAQKLQ 100 (248)
Q Consensus 62 ~~~~ll~a~~~l~~~~~~~~lvivG~---~~~~~~~l~~~~~ 100 (248)
.+..++.. +.+++|.+.+++.+. |..-..++.+.++
T Consensus 142 a~~D~~~~---~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~ 180 (432)
T TIGR00237 142 ALADILHI---LKRRDPSLKVVIYPTLVQGEGAVQSIVESIE 180 (432)
T ss_pred HHHHHHHH---HHhhCCCceEEEecccccCccHHHHHHHHHH
Confidence 34455554 455688888888875 3333344444443
No 229
>PRK09581 pleD response regulator PleD; Reviewed
Probab=60.32 E-value=1.2e+02 Score=26.71 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=38.7
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHhh-----CCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAAA-----GCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a~-----G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++.... ++..|..+++-+.. ..|+|+-....+.....+.+ ..|. +++..+-+.++|...+..++.
T Consensus 47 ~dlvi~d~~~-~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~-~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 47 PDIILLDVMM-PGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGL-EAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 5776664333 22234455565542 57888632333444444433 3332 355556799999988887764
No 230
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=59.93 E-value=1e+02 Score=25.75 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH-HHHHhhCCcEEECC
Q 043830 91 HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI-SEAAAAGCAVLTGP 169 (248)
Q Consensus 91 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~-lEA~a~G~Pvi~~~ 169 (248)
....+++.+++.|+..... ++ + ...+..+...+|++-+++.... -..+ -++...|+||+++.
T Consensus 77 gl~~l~~~~~~~Gl~~~t~-----------~~--d-~~~~~~l~~~~d~lkI~s~~~~---n~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTE-----------VM--D-PRDVEIVAEYADILQIGARNMQ---NFELLKEVGKQGKPVLLKR 139 (260)
T ss_pred HHHHHHHHHHHhCCCEEEe-----------eC--C-hhhHHHHHhhCCEEEECccccc---CHHHHHHHhcCCCcEEEeC
Confidence 3466778888999874211 11 1 1244455566898776433221 1234 45566899999976
Q ss_pred CCC-ChHH---HHHHHHhcCC
Q 043830 170 HIG-HYSN---MVSAMQRLNP 186 (248)
Q Consensus 170 ~~~-~~~~---~~~~~~~~g~ 186 (248)
... ...+ +++.+...|.
T Consensus 140 G~~~t~~e~~~Ave~i~~~Gn 160 (260)
T TIGR01361 140 GMGNTIEEWLYAAEYILSSGN 160 (260)
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 543 3443 4555555443
No 231
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=58.72 E-value=12 Score=32.09 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=24.1
Q ss_pred HHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE
Q 043830 73 LMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL 108 (248)
Q Consensus 73 l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~ 108 (248)
+.+.+||. ++|+|+...-.+..+..++.+|+...+
T Consensus 71 I~~lnpd~-VLIIGGp~AVs~~yE~~Lks~GitV~R 105 (337)
T COG2247 71 IIELNPDL-VLIIGGPIAVSPNYENALKSLGITVKR 105 (337)
T ss_pred HHhhCCce-EEEECCCCcCChhHHHHHHhCCcEEEE
Confidence 34557875 567787655557778888899987543
No 232
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=58.09 E-value=90 Score=25.62 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcC
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGG 144 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~ 144 (248)
..++.+.+ ...+...+-+-........+.+.++++|....+-.. +.+ +.+.+..++...|.+++.
T Consensus 73 ~~i~~~~~---aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlaln-----P~T------~~~~l~~~l~~vD~VLvM- 137 (229)
T PRK09722 73 DYIDQLAD---AGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLN-----PET------PVESIKYYIHLLDKITVM- 137 (229)
T ss_pred HHHHHHHH---cCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeC-----CCC------CHHHHHHHHHhcCEEEEE-
Confidence 45565533 345542222221111234566778888886432211 111 346888999999998775
Q ss_pred ccCCCCCCCCHHHHH------------hhCCcEEECCCCCChHHHHHHHHhcCC
Q 043830 145 SFLPGLAGHNISEAA------------AAGCAVLTGPHIGHYSNMVSAMQRLNP 186 (248)
Q Consensus 145 s~~e~~gg~~~lEA~------------a~G~Pvi~~~~~~~~~~~~~~~~~~g~ 186 (248)
|..+||+|+.+++.+ -.|..+.+.-++|-..+.+..+.+.|.
T Consensus 138 sV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGa 191 (229)
T PRK09722 138 TVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGA 191 (229)
T ss_pred EEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCC
Confidence 455899999876632 124444432233333355556666554
No 233
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=57.81 E-value=72 Score=25.28 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=23.1
Q ss_pred HHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 133 LYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 133 ~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
....=|++|+.....+ ...+.||..+|+|+|+
T Consensus 124 ~~~~Pdlviv~~~~~~---~~ai~Ea~~l~IP~I~ 155 (193)
T cd01425 124 MFRLPDLVIVLDPRKE---HQAIREASKLGIPVIA 155 (193)
T ss_pred cccCCCEEEEeCCccc---hHHHHHHHHcCCCEEE
Confidence 3456788777544332 3568999999999997
No 234
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=57.43 E-value=1.5e+02 Score=26.78 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecC---CCCCHHHHHHHHH
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPR---HPQHGKEIAQKLQ 100 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~---~~~~~~~l~~~~~ 100 (248)
+..++.. +.+++|.+.+.+.+. |..-..++.+.++
T Consensus 149 ~~D~~~~---~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~ 186 (438)
T PRK00286 149 IRDILTV---LRRRFPLVEVIIYPTLVQGEGAAASIVAAIE 186 (438)
T ss_pred HHHHHHH---HHhcCCCCeEEEecCcCcCccHHHHHHHHHH
Confidence 4455554 445678888888875 3333344444443
No 235
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=57.11 E-value=90 Score=24.21 Aligned_cols=69 Identities=10% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++.... ++..|..+++.+. ...|+|+-....+.......+ +.|. +++..+-+.++|..++..++.
T Consensus 47 ~d~vi~d~~~-~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 47 PDLILLDWML-PGTSGIELCRRLRRRPETRAIPIIMLTARGEEEDRVRGL-ETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred CCEEEEECCC-CCCcHHHHHHHHHccccCCCCCEEEEecCCCHHHHHHHH-hcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 5665553222 2222334444443 246777522222322233323 2332 344555677888877776654
No 236
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=57.01 E-value=93 Score=24.33 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=36.4
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++.... ++..|..+++-+. ...|+|+-....+.......+ +.|. +++..+-+.++|...+..++.
T Consensus 45 ~dlvild~~l-~~~~g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l-~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 45 PDIAIVDLGL-PDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVL-SAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred CCEEEEECCC-CCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHH-HcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 5776653333 2222344443332 367888632222333333333 3332 355566788999988887765
No 237
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=56.08 E-value=2e+02 Score=28.02 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=53.5
Q ss_pred ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhC----CcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHH
Q 043830 126 TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAG----CAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEA 201 (248)
Q Consensus 126 ~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G----~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~ 201 (248)
+..++-++|..||++++ .+..+|. .++.+|..+|. .+-|.+.-.|.- ...+.+. .++.+-|.+.++..
T Consensus 362 ~~~~l~a~~~Vaev~~v-~s~rdGm-nl~~~e~i~~~~~~~~~lVlsef~G~~-----~tl~d~a-ivvnpw~~~~~~~~ 433 (732)
T KOG1050|consen 362 PFLELLALYKVAEVCPV-TSWRDGM-NLVFLEYILCQENKKSVLVLSEFIGDD-----TTLEDAA-IVVNPWDGDEFAIL 433 (732)
T ss_pred CHHHHhhhHHhhhheee-ccccccc-chhhhHHHHhhcccCCceEEeeecccc-----ccccccC-EEECCcchHHHHHH
Confidence 45689999999999876 4666654 45568887774 344443222211 1112221 44556789999999
Q ss_pred HHHhhhCHHHHHHHHH
Q 043830 202 LSQLFSDARVLEAQQM 217 (248)
Q Consensus 202 i~~ll~~~~~~~~~~~ 217 (248)
|...+..++...++++
T Consensus 434 i~~al~~s~~e~~~r~ 449 (732)
T KOG1050|consen 434 ISKALTMSDEERELRE 449 (732)
T ss_pred HHHHhhcCHHHHhhcc
Confidence 9999987665555544
No 238
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=56.08 E-value=1e+02 Score=24.47 Aligned_cols=112 Identities=11% Similarity=0.109 Sum_probs=54.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+++.....+...+...|... .......+....+. ..|++++...... ..|..++
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v---------------~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~ 68 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQV---------------RSAANAEQMDRLLTRESFHLMVLDLMLPG-EDGLSIC 68 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEE---------------EEECCHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHH
Confidence 3456677665544345555555544321 12222223333332 3577666433322 2244444
Q ss_pred HHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+. ...|+|+-....+.......+ +.|. +++..+-+.++|...+..++.
T Consensus 69 ~~lr~~~~~~pii~ls~~~~~~~~~~~l-~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 69 RRLRSQNNPTPIIMLTAKGEEVDRIVGL-EIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred HHHHhcCCCCCEEEEECCCcHHHHHHHH-hcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 4443 367888632222322223222 3332 355556788999988887765
No 239
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=55.94 E-value=1.1e+02 Score=24.92 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=66.2
Q ss_pred HHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeE--EEEeCCCcchHHHHHHHHHHHHHhCCCeEE
Q 043830 5 AIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQV--WMASSIHRGEEKVMLAVHKVLMQKNPNLVT 82 (248)
Q Consensus 5 ~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v--~l~~~~~~~~~~~ll~a~~~l~~~~~~~~l 82 (248)
.+.+...|++-=++.|.- +.|-+... ..+...+++|+...+-++ =|... +-+..++.+.. ..++...
T Consensus 22 i~~l~~~g~d~lHiDimD-G~FVPN~t---fg~~~i~~lr~~~~~~~~dvHLMv~----~P~~~i~~~~~---~gad~I~ 90 (223)
T PRK08745 22 VDNVLKAGADWVHFDVMD-NHYVPNLT---IGPMVCQALRKHGITAPIDVHLMVE----PVDRIVPDFAD---AGATTIS 90 (223)
T ss_pred HHHHHHcCCCEEEEeccc-CccCCCcc---cCHHHHHHHHhhCCCCCEEEEeccC----CHHHHHHHHHH---hCCCEEE
Confidence 344555676654444441 12222211 112345667654223332 22221 22345555533 3566543
Q ss_pred EEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHH
Q 043830 83 IIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 83 vivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lE 157 (248)
+-+-... ...+..+.+++.|....+-.. +.+ +.+.+..++...|.+++. |..+||+|+.+++
T Consensus 91 ~H~Ea~~-~~~~~l~~Ir~~g~k~Glaln-----P~T------~~~~i~~~l~~vD~VlvM-tV~PGf~GQ~fi~ 152 (223)
T PRK08745 91 FHPEASR-HVHRTIQLIKSHGCQAGLVLN-----PAT------PVDILDWVLPELDLVLVM-SVNPGFGGQAFIP 152 (223)
T ss_pred EcccCcc-cHHHHHHHHHHCCCceeEEeC-----CCC------CHHHHHHHHhhcCEEEEE-EECCCCCCccccH
Confidence 3333222 335677788898876432211 111 346788999999997765 5558999987755
No 240
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=55.88 E-value=1.7e+02 Score=26.97 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=60.7
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhH
Q 043830 51 QVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGE 129 (248)
Q Consensus 51 ~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~ 129 (248)
.++.|++.-.-+ ..|++|. ...+++++++|-..|. +...+.+.+.+.|++-. .+.+ .-
T Consensus 362 viltyg~s~vV~-~ill~A~----~~~k~frVvVVDSRP~~EG~~~lr~Lv~~Ginct------------Yv~I----~a 420 (556)
T KOG1467|consen 362 VLLTYGSSSVVN-MILLEAK----ELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCT------------YVLI----NA 420 (556)
T ss_pred EEEEecchHHHH-HHHHHHH----HhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeE------------EEEe----hh
Confidence 344555422212 3677764 3457899999976655 33455556667787621 1222 25
Q ss_pred HHHHHhhCCEEEEcCc-cCC-CC----CC--CCHHHHHhhCCcEEECCCCCChHH
Q 043830 130 LRQLYKLTPIAVIGGS-FLP-GL----AG--HNISEAAAAGCAVLTGPHIGHYSN 176 (248)
Q Consensus 130 l~~~y~~ad~~~v~~s-~~e-~~----gg--~~~lEA~a~G~Pvi~~~~~~~~~~ 176 (248)
+..+|..++.+|+|.+ +.- |+ -| +..+=|=++.+|||+.-...-|.|
T Consensus 421 ~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~e 475 (556)
T KOG1467|consen 421 ASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHE 475 (556)
T ss_pred HHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhh
Confidence 6667777887777644 221 10 12 235777889999998655444444
No 241
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=55.75 E-value=94 Score=24.03 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++...+. +..|..+++.+. ...|+|+-....+.......+ +.| .+++..+.+.++|...+..++.
T Consensus 45 ~dlvild~~l~-~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~-~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 45 YDAVILDLTLP-GMDGRDILREWREKGQREPVLILTARDALAERVEGL-RLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred CCEEEEECCCC-CCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHH-hCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 57766643332 222444444443 346777632222332233333 333 2355566788888888877653
No 242
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=55.58 E-value=1.3e+02 Score=25.69 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=46.7
Q ss_pred HhCCCeEEEEecCCCCC-HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCc-cCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQH-GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGS-FLPGLAG 152 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~-~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s-~~e~~gg 152 (248)
++..++++++.-.-|.. ...+...+.+.|++. .++.| +.+..+|...|.+++|.. ..+. |+
T Consensus 137 ~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~v--------------tlI~D--sa~~~~m~~vd~VivGad~v~~n-G~ 199 (301)
T TIGR00511 137 EQGKDIEVIATETRPRKQGHITAKELRDYGIPV--------------TLIVD--SAVRYFMKEVDHVVVGADAITAN-GA 199 (301)
T ss_pred HcCCcEEEEEecCCCcchHHHHHHHHHHCCCCE--------------EEEeh--hHHHHHHHhCCEEEECccEEecC-CC
Confidence 34456787766554542 234455556677753 24555 467788999999988654 3332 22
Q ss_pred C--------CHHHHHhhCCcEEE
Q 043830 153 H--------NISEAAAAGCAVLT 167 (248)
Q Consensus 153 ~--------~~lEA~a~G~Pvi~ 167 (248)
. ..+=|-.+++|+++
T Consensus 200 v~nkiGT~~lA~~Ak~~~vPv~V 222 (301)
T TIGR00511 200 LINKIGTSQLALAAREARVPFMV 222 (301)
T ss_pred EEEHHhHHHHHHHHHHhCCCEEE
Confidence 1 12556778999997
No 243
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=54.56 E-value=1.5e+02 Score=25.92 Aligned_cols=105 Identities=14% Similarity=0.198 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEe----cC---------CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhH
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIV----PR---------HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGE 129 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lviv----G~---------~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~ 129 (248)
.+.+++.+..+++...+ ++.. ++ +.+....+.+.+++.|++.... +.+ ...
T Consensus 106 ~e~~~~~A~~lk~~ga~--~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~te-------------v~d-~~~ 169 (335)
T PRK08673 106 EEQILEIARAVKEAGAQ--ILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTE-------------VMD-PRD 169 (335)
T ss_pred HHHHHHHHHHHHHhchh--hccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEe-------------eCC-HHH
Confidence 45788888887665433 2222 11 2222355667778888874221 111 134
Q ss_pred HHHHHhhCCEEEEcCccCCCCCCCC-HHHHHhhCCcEEECCCCC-ChHH---HHHHHHhcCC
Q 043830 130 LRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAAAGCAVLTGPHIG-HYSN---MVSAMQRLNP 186 (248)
Q Consensus 130 l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a~G~Pvi~~~~~~-~~~~---~~~~~~~~g~ 186 (248)
+..+...+|++-+++..... .. +-++...|+||+..+... ...| +++.+...|+
T Consensus 170 ~~~l~~~vd~lqIgAr~~~N---~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN 228 (335)
T PRK08673 170 VELVAEYVDILQIGARNMQN---FDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGN 228 (335)
T ss_pred HHHHHHhCCeEEECcccccC---HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 55556668997775433222 22 466778899999965543 3333 4555655554
No 244
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=54.26 E-value=52 Score=27.13 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=42.6
Q ss_pred EEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh-----hCCEEEEcCccCCCCCCCC
Q 043830 81 VTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK-----LTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 81 ~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~-----~ad~~~v~~s~~e~~gg~~ 154 (248)
++.|+-..++ ..+.+.+...+.|++...... .....+..|--++ ...+.+... .+|.+|+...-.. ...
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~-~~~~~~~~ia~i~-p~~i~~~~~~~~~~~aDAifisCTnLr---t~~ 196 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTC-LGLTDDREMARIS-PDCIVEAALAAFDPDADALFLSCTALR---AAT 196 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeec-cCCCCCceeeecC-HHHHHHHHHHhcCCCCCEEEEeCCCch---hHH
Confidence 4555543333 335677778889987543321 1111122232222 234444433 4888887543222 223
Q ss_pred H---HHHHhhCCcEEECCC
Q 043830 155 I---SEAAAAGCAVLTGPH 170 (248)
Q Consensus 155 ~---lEA~a~G~Pvi~~~~ 170 (248)
+ +|.. .|+|||.++.
T Consensus 197 vi~~lE~~-lGkPVlsSNq 214 (239)
T TIGR02990 197 CAQRIEQA-IGKPVVTSNQ 214 (239)
T ss_pred HHHHHHHH-HCCCEEEHHH
Confidence 3 4544 8999998754
No 245
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=54.21 E-value=90 Score=29.59 Aligned_cols=65 Identities=9% Similarity=-0.043 Sum_probs=39.0
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.|-. -.+++.+++.+++.+......+....+.++=++.|.. .....++..||++++.++.
T Consensus 228 vI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~ 300 (616)
T PRK07418 228 LLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGAR 300 (616)
T ss_pred EEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCC
Confidence 678887753 3478999999999986543333211122222333311 1345688999998875553
No 246
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=52.68 E-value=1.2e+02 Score=24.23 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll 206 (248)
.|++++-... ++..|..++..+. ...|||+-....+.....+.+ ..| .|++..+.+.+.|.++|....
T Consensus 51 pdlvllD~~m-p~~~gle~~~~l~~~~~~~~iivls~~~~~~~~~~al-~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 51 PGLILLDNYL-PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAV-RCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred CCEEEEeCCC-CCCcHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHH-HcCccEEEECCcCHHHHHHHHHHHH
Confidence 5665553222 2223344444332 245666422222332333333 333 245555678888888887654
No 247
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=52.56 E-value=1.4e+02 Score=25.07 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEecC-------------CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 62 EEKVMLAVHKVLMQKNPNLVTIIVPR-------------HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 62 ~~~~ll~a~~~l~~~~~~~~lvivG~-------------~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
+.+.+++....++.. ...++..|. +.+....+++.+++.|++..... .+ ..
T Consensus 39 ~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~-------------~d-~~ 102 (266)
T PRK13398 39 SEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEV-------------MD-TR 102 (266)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEee-------------CC-hh
Confidence 345778888888764 345666661 11223567777888988742211 11 12
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCC-HHHHHhhCCcEEECCCCC-ChHH---HHHHHHhcCC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAAAGCAVLTGPHIG-HYSN---MVSAMQRLNP 186 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a~G~Pvi~~~~~~-~~~~---~~~~~~~~g~ 186 (248)
.+..+...+|++-+++..... .. +-++...|+||+..+... +..+ +++.+...|.
T Consensus 103 ~~~~l~~~vd~~kIga~~~~n---~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn 162 (266)
T PRK13398 103 DVEEVADYADMLQIGSRNMQN---FELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGN 162 (266)
T ss_pred hHHHHHHhCCEEEECcccccC---HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 344445558887665433221 22 356677899999966543 4444 3444544443
No 248
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=52.04 E-value=44 Score=27.16 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=35.8
Q ss_pred HhhCCEEEEcCccCCCCCC-CCHHHHHhhCCcEEECCCCCC--hHHHHHHHHhcCCceEEEcCCHHHHHH
Q 043830 134 YKLTPIAVIGGSFLPGLAG-HNISEAAAAGCAVLTGPHIGH--YSNMVSAMQRLNPKSVLQVSGKSELEE 200 (248)
Q Consensus 134 y~~ad~~~v~~s~~e~~gg-~~~lEA~a~G~Pvi~~~~~~~--~~~~~~~~~~~g~g~~~~~~~~~~l~~ 200 (248)
...||.+||..+-..+ |. ++.-.|+-.|+||.+-|..-. ...-...+.+.| + ..+.+.+++.+
T Consensus 153 a~ls~~vivve~~~~s-Gtl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~G--A-~~i~~~~d~~~ 218 (220)
T TIGR00732 153 SGLSRAVLVVEAPLKS-GALITARYALEQGREVFAYPGDLNSPESDGCHKLIEQG--A-ALITSAKDILE 218 (220)
T ss_pred HHhcCEEEEEECCCCC-chHHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCC--C-EEECCHHHHHH
Confidence 4456666665443332 23 356889999999998543211 112233455666 3 45577777754
No 249
>CHL00148 orf27 Ycf27; Reviewed
Probab=50.87 E-value=1.2e+02 Score=23.85 Aligned_cols=113 Identities=15% Similarity=0.245 Sum_probs=54.4
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHH--hhCCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLY--KLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y--~~ad~~~v~~s~~e~~gg~~~ 155 (248)
+..+++++.+++.....+...+...+.. +.......+....+ ...|++++.... ++..|..+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~---------------v~~~~~~~~~l~~~~~~~~d~illd~~~-~~~~g~~~ 68 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYE---------------VITASDGEEALKLFRKEQPDLVILDVMM-PKLDGYGV 68 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCE---------------EEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHH
Confidence 3456677776655445555555544432 11111112222222 235776653333 22224444
Q ss_pred HHHHh--hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 156 SEAAA--AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 156 lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++-+. ...|+|+-....+.......+ +.| .+++..+-+.++|...+..++.
T Consensus 69 ~~~l~~~~~~~ii~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 69 CQEIRKESDVPIIMLTALGDVSDRITGL-ELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred HHHHHhcCCCcEEEEECCCCHHhHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 43332 357887632222332333333 333 2355566788999888877664
No 250
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=50.45 E-value=1.2e+02 Score=23.75 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=23.8
Q ss_pred CCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 162 GCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 162 G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
..|+|+-....+.......+ +.| .+++..+-+.++|...+..++.
T Consensus 76 ~~pvi~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 76 DIPVVMLTARGEEEDRVRGL-ETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CCCEEEEECCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 46777522222332333333 233 2355556788888888877654
No 251
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=50.43 E-value=1.6e+02 Score=24.98 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEc
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIG 143 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~ 143 (248)
.++..+....++...+++++.-.-|. +...+...+.+.|++. .+++| +.+..+|...|.+++|
T Consensus 121 tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~v--------------tlI~D--sa~~~~m~~vd~VivG 184 (275)
T PRK08335 121 AVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEF--------------EVITD--AQLGLFAKEATLALVG 184 (275)
T ss_pred HHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCE--------------EEEec--cHHHHHHHhCCEEEEC
Confidence 34444444445556777776655454 2245655567777763 24555 3567778899999886
Q ss_pred Cc-cCCCCCCC--------CHHHHHhhCCcEEEC
Q 043830 144 GS-FLPGLAGH--------NISEAAAAGCAVLTG 168 (248)
Q Consensus 144 ~s-~~e~~gg~--------~~lEA~a~G~Pvi~~ 168 (248)
.. .... |+. ..+=|-..|+|+++.
T Consensus 185 AD~I~~n-G~v~NKiGT~~lA~~Ak~~~vPfyV~ 217 (275)
T PRK08335 185 ADNVTRD-GYVVNKAGTYLLALACHDNGVPFYVA 217 (275)
T ss_pred ccEEecC-CCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 54 2332 221 136667889999973
No 252
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=50.17 E-value=76 Score=26.58 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=43.6
Q ss_pred HHHhCCCeEEEEecCCCCCH-HHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh-CCEEEEcCc-cCCC
Q 043830 73 LMQKNPNLVTIIVPRHPQHG-KEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL-TPIAVIGGS-FLPG 149 (248)
Q Consensus 73 l~~~~~~~~lvivG~~~~~~-~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~-ad~~~v~~s-~~e~ 149 (248)
..+...+++++++-..|... ..+.+.+.+.|++. .++.| ..+..+|.. +|.+++|.. ..+.
T Consensus 127 a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v--------------~~i~d--~~~~~~m~~~vd~VliGad~v~~n 190 (282)
T PF01008_consen 127 AKKKGKKFRVIVLESRPYNEGRLMAKELAEAGIPV--------------TLIPD--SAVGYVMPRDVDKVLIGADAVLAN 190 (282)
T ss_dssp HHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT-EE--------------EEE-G--GGHHHHHHCTESEEEEE-SEEETT
T ss_pred HHHcCCeEEEEEccCCcchhhhhHHHHhhhcceeE--------------EEEec--hHHHHHHHHhCCeeEEeeeEEecC
Confidence 34445678877776555532 23444455667653 23444 468889999 999888654 3332
Q ss_pred CCCC--------CHHHHHhhCCcEEE
Q 043830 150 LAGH--------NISEAAAAGCAVLT 167 (248)
Q Consensus 150 ~gg~--------~~lEA~a~G~Pvi~ 167 (248)
|+. ..+=|-.+++||++
T Consensus 191 -G~v~nk~Gt~~~a~~Ak~~~vPv~v 215 (282)
T PF01008_consen 191 -GGVVNKVGTLQLALAAKEFNVPVYV 215 (282)
T ss_dssp -S-EEEETTHHHHHHHHHHTT-EEEE
T ss_pred -CCEeehhhHHHHHHHHHhhCCCEEE
Confidence 221 13556678999997
No 253
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=49.68 E-value=80 Score=23.85 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHh-cCCce
Q 043830 58 IHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQK-EGEVV 106 (248)
Q Consensus 58 ~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~-~~l~~ 106 (248)
+..++....++.+..+++.+|+-+++|.+-|-.. .+++.+-+. .+++.
T Consensus 68 ~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~-~~i~~L~~~~~n~ev 116 (142)
T PF07801_consen 68 TSDNHFNESMKSISSIRKFYPNHKIILYDLGLSE-EQIKKLKKNFCNVEV 116 (142)
T ss_pred ecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCH-HHHHHHHhcCCceEE
Confidence 3445666777888888888999999999987765 566655333 44443
No 254
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=49.43 E-value=93 Score=28.88 Aligned_cols=65 Identities=6% Similarity=-0.009 Sum_probs=39.6
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC------hhHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT------LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.|-. -.+++.+++.+++++......+....+.++=++.|. ......+++.||++++.++.
T Consensus 209 vil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~ 282 (539)
T TIGR03393 209 SLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVR 282 (539)
T ss_pred EEEeChhhcccChHHHHHHHHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCc
Confidence 677887642 347899999999998665444321111222222321 12566789999998886553
No 255
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=49.02 E-value=94 Score=30.57 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=59.2
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh----CCEEEEcCccCCCCCCCCHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL----TPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~----ad~~~v~~s~~e~~gg~~~l 156 (248)
+++|+.+.+.....+...+...|... .......+-..++.. .|++++ .. ++..|...+
T Consensus 699 ~ILvVddd~~~~~~l~~~L~~~G~~v---------------~~~~s~~~al~~l~~~~~~~DlVll--~~-~~~~g~~l~ 760 (828)
T PRK13837 699 TVLLVEPDDATLERYEEKLAALGYEP---------------VGFSTLAAAIAWISKGPERFDLVLV--DD-RLLDEEQAA 760 (828)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCEE---------------EEeCCHHHHHHHHHhCCCCceEEEE--CC-CCCCHHHHH
Confidence 57777776655456666666666542 222322333344422 588777 22 222233333
Q ss_pred H---HHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 157 E---AAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 E---A~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+ ......|||+.....+.....+.+ ..|.+++..|-+.++|...+...+.
T Consensus 761 ~~l~~~~~~ipIIvls~~~~~~~~~~~~-~~G~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 761 AALHAAAPTLPIILGGNSKTMALSPDLL-ASVAEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred HHHHhhCCCCCEEEEeCCCchhhhhhHh-hccCcEEeCCCCHHHHHHHHHHHHc
Confidence 3 334567888743322332333333 3334467777899999999987774
No 256
>PRK06154 hypothetical protein; Provisional
Probab=48.86 E-value=1.4e+02 Score=28.04 Aligned_cols=65 Identities=8% Similarity=0.000 Sum_probs=39.8
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+-. -.+++.+++.+++++......+....+.++-++.|.. .....+++.||++++.++.
T Consensus 218 vil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~ 290 (565)
T PRK06154 218 VIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCS 290 (565)
T ss_pred EEEECCCccccChHHHHHHHHHHhCCCEEECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCC
Confidence 677887653 3478999999999986544433221222333333321 1446778999998875543
No 257
>PRK08005 epimerase; Validated
Probab=48.71 E-value=1.4e+02 Score=24.14 Aligned_cols=78 Identities=22% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcC
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGG 144 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~ 144 (248)
..++.+.. ..++...+-+-.. ....++.+.+++.|...-+-.. +.+ +.+.+..++...|.+.+.
T Consensus 72 ~~i~~~~~---~gad~It~H~Ea~-~~~~~~l~~Ik~~G~k~GlAln-----P~T------p~~~i~~~l~~vD~VlvM- 135 (210)
T PRK08005 72 RWLPWLAA---IRPGWIFIHAESV-QNPSEILADIRAIGAKAGLALN-----PAT------PLLPYRYLALQLDALMIM- 135 (210)
T ss_pred HHHHHHHH---hCCCEEEEcccCc-cCHHHHHHHHHHcCCcEEEEEC-----CCC------CHHHHHHHHHhcCEEEEE-
Confidence 45555543 3455433222222 2335677778888886432111 111 346788888999997775
Q ss_pred ccCCCCCCCCHHHH
Q 043830 145 SFLPGLAGHNISEA 158 (248)
Q Consensus 145 s~~e~~gg~~~lEA 158 (248)
|..+||+|+.+++.
T Consensus 136 sV~PGf~GQ~f~~~ 149 (210)
T PRK08005 136 TSEPDGRGQQFIAA 149 (210)
T ss_pred EecCCCccceecHH
Confidence 55689999887653
No 258
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=48.66 E-value=1.4e+02 Score=23.98 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=31.0
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQL 205 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~l 205 (248)
.|++++.... ++..|..+++.+. .+.|||+-....+.....+.+..+..|++..+.+.+.|.++|..+
T Consensus 50 ~DlvilD~~~-p~~~G~eli~~l~~~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 50 IDLILLDIYM-QQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCEEEEecCC-CCCCcHHHHHHHHhhCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 4665553222 2122444444432 256766522222333333333222223555556778888777653
No 259
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=48.53 E-value=1.6e+02 Score=24.59 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.9
Q ss_pred ChhHHHHHHhhCCEEEEcCccCC
Q 043830 126 TLGELRQLYKLTPIAVIGGSFLP 148 (248)
Q Consensus 126 ~~~~l~~~y~~ad~~~v~~s~~e 148 (248)
+.+++.++++.||-++|++++.+
T Consensus 210 t~~Ni~~~l~~ADG~IVGS~~K~ 232 (254)
T PF03437_consen 210 TPENIAEYLSYADGAIVGSYFKK 232 (254)
T ss_pred CHHHHHHHHHhCCEEEEeeeeee
Confidence 45789999999999999988875
No 260
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=48.32 E-value=1.9e+02 Score=25.23 Aligned_cols=62 Identities=11% Similarity=-0.005 Sum_probs=34.6
Q ss_pred hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCC-HHHHHHHHHHhhhC
Q 043830 136 LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSG-KSELEEALSQLFSD 208 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~-~~~l~~~i~~ll~~ 208 (248)
.=|++||.....+ -..+.||..+|+|||+--++..-+.. ++ +.++++| .-.-...+..++.+
T Consensus 152 ~Pd~viv~d~~~e---~~AI~EA~kl~IPvIaivDTn~dp~~----Id----ypIP~NDds~~si~li~~~la~ 214 (326)
T PRK12311 152 LPDLLFVIDTNKE---DIAIQEAQRLGIPVAAIVDTNCDPDG----IT----YPVPGNDDAGRAIALYCDLIAR 214 (326)
T ss_pred CCCEEEEeCCccc---hHHHHHHHHcCCCEEEEeeCCCCccc----cc----eeecCCCchHHHHHHHHHHHHH
Confidence 4677777443333 35689999999999973233121111 11 4566643 44444555555544
No 261
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=48.19 E-value=1.8e+02 Score=25.01 Aligned_cols=77 Identities=16% Similarity=0.301 Sum_probs=48.3
Q ss_pred HhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCc-cCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGS-FLPGLAG 152 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s-~~e~~gg 152 (248)
.....+++++.-+.|. +...+.+.+++.|++. .+++| +.+..+++.+|.+++|.- .... |+
T Consensus 141 ~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~--------------~~I~D--sa~~~~~~~vd~VivGad~I~~n-G~ 203 (301)
T COG1184 141 DRGKRFKVIVTESRPRGEGRIMAKELRQSGIPV--------------TVIVD--SAVGAFMSRVDKVLVGADAILAN-GA 203 (301)
T ss_pred hcCCceEEEEEcCCCcchHHHHHHHHHHcCCce--------------EEEec--hHHHHHHHhCCEEEECccceecC-Cc
Confidence 3344577766655454 3345666677888753 34555 478899999999998653 3332 22
Q ss_pred ------CC--HHHHHhhCCcEEEC
Q 043830 153 ------HN--ISEAAAAGCAVLTG 168 (248)
Q Consensus 153 ------~~--~lEA~a~G~Pvi~~ 168 (248)
.. .+=|-..|+|+++.
T Consensus 204 lvnkiGT~~lA~~A~e~~~Pf~v~ 227 (301)
T COG1184 204 LVNKIGTSPLALAARELRVPFYVV 227 (301)
T ss_pred EEeccchHHHHHHHHHhCCCEEEE
Confidence 11 25556689999973
No 262
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=48.11 E-value=53 Score=23.14 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHhCCCeEEE-EecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCC
Q 043830 74 MQKNPNLVTI-IVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGL 150 (248)
Q Consensus 74 ~~~~~~~~lv-ivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~ 150 (248)
....+++.++ ++...+ +..++..++.+++. + .++.++++ ..|++++.+....
T Consensus 20 ~~~~~~~~v~~v~d~~~---~~~~~~~~~~~~~~----------------~----~~~~~ll~~~~~D~V~I~tp~~~-- 74 (120)
T PF01408_consen 20 LRSSPDFEVVAVCDPDP---ERAEAFAEKYGIPV----------------Y----TDLEELLADEDVDAVIIATPPSS-- 74 (120)
T ss_dssp HHTTTTEEEEEEECSSH---HHHHHHHHHTTSEE----------------E----SSHHHHHHHTTESEEEEESSGGG--
T ss_pred HhcCCCcEEEEEEeCCH---HHHHHHHHHhcccc----------------h----hHHHHHHHhhcCCEEEEecCCcc--
Confidence 3344677655 333332 44555567776651 1 24556666 6888877433211
Q ss_pred CCCCHHHHHhhCCcEEE
Q 043830 151 AGHNISEAAAAGCAVLT 167 (248)
Q Consensus 151 gg~~~lEA~a~G~Pvi~ 167 (248)
....+.+++..|++|++
T Consensus 75 h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 75 HAEIAKKALEAGKHVLV 91 (120)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHcCCEEEE
Confidence 12347899999999998
No 263
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=47.80 E-value=1.7e+02 Score=24.78 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=24.6
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
-...+++.||.+++.. ++ -.-..||++.|+||-+
T Consensus 237 PY~~~La~Adyii~Ta---DS--inM~sEAasTgkPv~~ 270 (329)
T COG3660 237 PYIDMLAAADYIISTA---DS--INMCSEAASTGKPVFI 270 (329)
T ss_pred chHHHHhhcceEEEec---ch--hhhhHHHhccCCCeEE
Confidence 4567899999965421 22 1226899999999997
No 264
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=47.61 E-value=1.2e+02 Score=27.66 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=25.7
Q ss_pred HHHhhCCEEEEcCccCCCCCCCC-HHHHHhhCCcEEE
Q 043830 132 QLYKLTPIAVIGGSFLPGLAGHN-ISEAAAAGCAVLT 167 (248)
Q Consensus 132 ~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a~G~Pvi~ 167 (248)
.+.+.+|+++..|++.. -++ +-+|.+.|.||+.
T Consensus 65 ~~~~~~d~vV~SPGi~~---~~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 65 EDLAEFDLVVKSPGIPP---THPLVEAAKAAGIEIIG 98 (448)
T ss_pred hccccCCEEEECCCCCC---CCHHHHHHHHcCCcEEe
Confidence 78889999888887743 233 6778899999995
No 265
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=47.11 E-value=27 Score=30.83 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=33.5
Q ss_pred HHhhC-CcEEECCCCCChHHHHHHHHhcCCceEEEc---CCHHHHHHHHHHhhhCHHHHHH
Q 043830 158 AAAAG-CAVLTGPHIGHYSNMVSAMQRLNPKSVLQV---SGKSELEEALSQLFSDARVLEA 214 (248)
Q Consensus 158 A~a~G-~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~---~~~~~l~~~i~~ll~~~~~~~~ 214 (248)
|+-.| +|||.|+ .+. +.++... ..+.+ +|+++|++.|.+|-+|+.++.+
T Consensus 273 al~~gsVPVvlg~--~n~----e~fvP~~--SfI~vdDF~s~~ela~ylk~L~~n~~~Y~~ 325 (372)
T KOG2619|consen 273 ALDAGSVPVVLGP--PNY----ENFVPPD--SFIHVDDFQSPQELAAYLKKLDKNPAAYLS 325 (372)
T ss_pred hhhcCcccEEECC--ccc----cccCCCc--ceEehhhcCCHHHHHHHHHHhhcCHHHHHH
Confidence 44444 5999986 233 3444444 33443 7999999999999999987755
No 266
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=47.09 E-value=1.4e+02 Score=27.96 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=39.3
Q ss_pred EEEecCCC---CCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHP---QHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~---~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+- ...+++.+++.++|++......+....+.++=++.|.. .....+++.||++++.++.
T Consensus 200 ~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~ 272 (579)
T TIGR03457 200 VIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTR 272 (579)
T ss_pred EEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCC
Confidence 67888764 23478999999999986543332211122222333421 2345678899998876553
No 267
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=46.91 E-value=78 Score=26.62 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEec-------------CCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 62 EEKVMLAVHKVLMQKNPNLVTIIVP-------------RHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 62 ~~~~ll~a~~~l~~~~~~~~lvivG-------------~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
..+.+.++...++... .+++--| -+.+....+.+...+.|+..... +.+ ..
T Consensus 57 s~E~i~~~A~~vk~~G--a~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtE-------------vm~-~~ 120 (286)
T COG2876 57 SEEQVRETAESVKAAG--AKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTE-------------VMD-VR 120 (286)
T ss_pred CHHHHHHHHHHHHHcc--hhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEE-------------ecC-HH
Confidence 3467788877777654 3333222 12333345556667788864321 222 24
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC----CChHHHHHHHHhcCCceEEEc
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI----GHYSNMVSAMQRLNPKSVLQV 192 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~----~~~~~~~~~~~~~g~g~~~~~ 192 (248)
++......+|++-+++-..-+| --+-|+=..++||+.-... ..|=...+.+...|++-++.|
T Consensus 121 ~~e~~~~y~DilqvGARNMQNF--~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILC 186 (286)
T COG2876 121 DVEAAAEYADILQVGARNMQNF--ALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILC 186 (286)
T ss_pred HHHHHHhhhhHHHhcccchhhh--HHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEE
Confidence 7888888999977754332222 1247888999999984322 222234567777777766655
No 268
>PRK13660 hypothetical protein; Provisional
Probab=46.64 E-value=1.4e+02 Score=23.49 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEe
Q 043830 65 VMLAVHKVLMQKNPNLVTIIV 85 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lviv 85 (248)
...+++..|++.+|++++.++
T Consensus 57 wAaEvvl~LK~~yp~lkL~~~ 77 (182)
T PRK13660 57 WAAEVVLELKEEYPDLKLAVI 77 (182)
T ss_pred HHHHHHHHHHhhCCCeEEEEE
Confidence 557788888999999998886
No 269
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=46.32 E-value=1.8e+02 Score=24.96 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCC-H-HHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEE
Q 043830 67 LAVHKVLMQKNPNLVTIIVPRHPQH-G-KEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVI 142 (248)
Q Consensus 67 l~a~~~l~~~~~~~~lvivG~~~~~-~-~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v 142 (248)
+..+....++...++++++-.-|.. . ..+...+.+.|++. .+++| ..+..+|. ..|.+++
T Consensus 140 ~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~v--------------tlI~D--sa~~~~m~~~~vd~Vlv 203 (303)
T TIGR00524 140 LGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDV--------------TLITD--SMAAYFMQKGEIDAVIV 203 (303)
T ss_pred HHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCE--------------EEECh--hHHHHHccccCCCEEEE
Confidence 3333333444556776666444442 2 23344556677753 23444 35777888 8999888
Q ss_pred cCc-cCCCCCCC--------CHHHHHhhCCcEEEC
Q 043830 143 GGS-FLPGLAGH--------NISEAAAAGCAVLTG 168 (248)
Q Consensus 143 ~~s-~~e~~gg~--------~~lEA~a~G~Pvi~~ 168 (248)
|.. ..+. |+. ..+=|-.+|+||++-
T Consensus 204 GAd~v~~n-G~v~nk~GT~~lA~~Ak~~~vPv~V~ 237 (303)
T TIGR00524 204 GADRIARN-GDVANKIGTYQLAVLAKEFRIPFFVA 237 (303)
T ss_pred cccEEecC-CCEeEhhhHHHHHHHHHHhCCCEEEe
Confidence 654 3332 221 136677899999973
No 270
>PRK11173 two-component response regulator; Provisional
Probab=46.15 E-value=1.5e+02 Score=23.51 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=36.6
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.|++++...+ +++.|..+++.+. ...|+|+-....+.......+ +.|. +++..+-+.++|...+..++..
T Consensus 48 ~dlvild~~l-~~~~g~~~~~~lr~~~~~pii~lt~~~~~~~~~~~~-~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 48 INLVIMDINL-PGKNGLLLARELREQANVALMFLTGRDNEVDKILGL-EIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred CCEEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 5776664333 2222444444443 257887632222332333333 3332 3555667889998888877753
No 271
>PLN02470 acetolactate synthase
Probab=45.94 E-value=1.3e+02 Score=28.28 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=37.7
Q ss_pred EEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+.. -.+++.+++.+++++......+....+.++=++.|.. ......++.||++++.++
T Consensus 219 vI~~G~g~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~ 288 (585)
T PLN02470 219 VVYVGGGCLNSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGV 288 (585)
T ss_pred EEEECCChhhhHHHHHHHHHHhCCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECC
Confidence 678888643 3478999999999986544333211111221222211 234577899999887554
No 272
>PRK09483 response regulator; Provisional
Probab=45.92 E-value=1.4e+02 Score=23.09 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=13.2
Q ss_pred eEEEcCCHHHHHHHHHHhhh
Q 043830 188 SVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll~ 207 (248)
++..+.+.+.|..++..++.
T Consensus 101 ~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 101 YLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred EEeCCCCHHHHHHHHHHHHC
Confidence 44445677777777777665
No 273
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=45.91 E-value=1.4e+02 Score=23.28 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++.... ++..|..+++.+. .+.|+|+-....+.......+ +.|. +++..+-+.++|...+..++.
T Consensus 45 ~dlvild~~~-~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 45 YDLIILDIML-PDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGL-ELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CCEEEEECCC-CCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHH-hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 5676553332 2122344444333 467887632222332333333 3332 355566788888888877664
No 274
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=45.83 E-value=2e+02 Score=24.78 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=45.7
Q ss_pred HhCCCeEEEEecCCCCC-HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCc-cCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQH-GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGS-FLPGLAG 152 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~-~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s-~~e~~gg 152 (248)
++..++++++.-.-|.. ...+...+.+.|++. .+++| +.+..+|...|.+++|.. ..+. |+
T Consensus 142 ~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~v--------------tlI~D--sav~~~m~~vd~VivGAd~v~~n-G~ 204 (310)
T PRK08535 142 EQGKDIEVIATETRPRNQGHITAKELAEYGIPV--------------TLIVD--SAVRYFMKDVDKVVVGADAITAN-GA 204 (310)
T ss_pred HCCCeEEEEEecCCchhhHHHHHHHHHHCCCCE--------------EEEeh--hHHHHHHHhCCEEEECccEEecC-CC
Confidence 34456776666544442 234445566777753 24555 467888899999988654 2333 22
Q ss_pred C--------CHHHHHhhCCcEEE
Q 043830 153 H--------NISEAAAAGCAVLT 167 (248)
Q Consensus 153 ~--------~~lEA~a~G~Pvi~ 167 (248)
. ..+=|-.+++||++
T Consensus 205 v~nkiGT~~~A~~Ak~~~vPv~V 227 (310)
T PRK08535 205 VINKIGTSQIALAAHEARVPFMV 227 (310)
T ss_pred EEeHHhHHHHHHHHHHhCCCEEE
Confidence 1 12555667999997
No 275
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=45.79 E-value=70 Score=29.87 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=38.2
Q ss_pred EEEecCCCCC-HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh------HHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQH-GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG------ELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~~-~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~------~l~~~y~~ad~~~v~~s~ 146 (248)
++|+|.+-.+ .+++.+++.++|++......+....+.++=++.|..+ .....++.||++++.++.
T Consensus 225 vii~G~g~~~~~~~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~ 296 (568)
T PRK07449 225 VVIAGRLSAEEGQAIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSP 296 (568)
T ss_pred EEEECCCChHHHHHHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCC
Confidence 7788876532 2788999999999865444332111122223333221 234667889998876553
No 276
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=45.76 E-value=1.3e+02 Score=23.32 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCC-CcchHHHHHHHHHHHHHhCCCe
Q 043830 2 TLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSI-HRGEEKVMLAVHKVLMQKNPNL 80 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~-~~~~~~~ll~a~~~l~~~~~~~ 80 (248)
+.+.+.|...|+.+++|-+.+-. +- .++.+.+...++...+..+-.. ..++...+++.+..+.. ..-
T Consensus 35 ~~~a~~L~~~~~~~D~VL~Spa~---Ra-------~QTae~v~~~~~~~~~~~~~~l~p~~d~~~~l~~l~~~~d--~v~ 102 (163)
T COG2062 35 ELVAAWLAGQGVEPDLVLVSPAV---RA-------RQTAEIVAEHLGEKKVEVFEELLPNGDPGTVLDYLEALGD--GVG 102 (163)
T ss_pred HHHHHHHHhcCCCCCEEEeChhH---HH-------HHHHHHHHHhhCcccceeccccCCCCCHHHHHHHHHHhcc--cCc
Confidence 45667788888877877665410 10 1233445555563333333333 33556667777665533 124
Q ss_pred EEEEecCCCCCHHHHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQK 98 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~ 98 (248)
.+++||+.|.- .++...
T Consensus 103 ~vllVgH~P~l-~~l~~~ 119 (163)
T COG2062 103 SVLLVGHNPLL-EELALL 119 (163)
T ss_pred eEEEECCCccH-HHHHHH
Confidence 68889997754 444443
No 277
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.97 E-value=1e+02 Score=24.70 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=62.4
Q ss_pred HHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEE
Q 043830 5 AIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTII 84 (248)
Q Consensus 5 ~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvi 84 (248)
.+.+.+-|++. |.|+-|. |. -.+..+.+++++++ +++.+++--. .+.+-++ .. -..+|++
T Consensus 22 a~al~~gGi~~--iEit~~t-------p~--a~~~I~~l~~~~~~--~~vGAGTVl~-~e~a~~a----i~--aGA~Fiv 81 (201)
T PRK06015 22 ARALAAGGLPA--IEITLRT-------PA--ALDAIRAVAAEVEE--AIVGAGTILN-AKQFEDA----AK--AGSRFIV 81 (201)
T ss_pred HHHHHHCCCCE--EEEeCCC-------cc--HHHHHHHHHHHCCC--CEEeeEeCcC-HHHHHHH----HH--cCCCEEE
Confidence 44555667763 5666431 00 01234556666642 5554443321 1122222 11 2467777
Q ss_pred ecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHh-hCCEEEEcCccCCCCCCCCHHHHHh-
Q 043830 85 VPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYK-LTPIAVIGGSFLPGLAGHNISEAAA- 160 (248)
Q Consensus 85 vG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~-~ad~~~v~~s~~e~~gg~~~lEA~a- 160 (248)
-|. ..+++.+.+++.++. ++.| +..|+...++ -+|++=++|.-. +||...+-++.
T Consensus 82 SP~---~~~~vi~~a~~~~i~----------------~iPG~~TptEi~~A~~~Ga~~vK~FPa~~--~GG~~yikal~~ 140 (201)
T PRK06015 82 SPG---TTQELLAAANDSDVP----------------LLPGAATPSEVMALREEGYTVLKFFPAEQ--AGGAAFLKALSS 140 (201)
T ss_pred CCC---CCHHHHHHHHHcCCC----------------EeCCCCCHHHHHHHHHCCCCEEEECCchh--hCCHHHHHHHHh
Confidence 665 226788888888775 2333 3356655444 478776676421 34566655544
Q ss_pred --hCCcEEE
Q 043830 161 --AGCAVLT 167 (248)
Q Consensus 161 --~G~Pvi~ 167 (248)
-+.|++.
T Consensus 141 plp~~~l~p 149 (201)
T PRK06015 141 PLAGTFFCP 149 (201)
T ss_pred hCCCCcEEe
Confidence 4566664
No 278
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=44.87 E-value=1.4e+02 Score=22.93 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=32.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEEc
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v~ 143 (248)
.-+.+|+|++.--...+..++.+.+-. |.+... ..++.++.+.||++++.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~at---------------Vt~~h~~T~~l~~~~~~ADIVVsa 86 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGAT---------------VTICHSKTKNLQEITRRADIVVSA 86 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-E---------------EEEE-TTSSSHHHHHTTSSEEEE-
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCe---------------EEeccCCCCcccceeeeccEEeee
Confidence 457889999877767888887776543 223322 24788999999997663
No 279
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=44.34 E-value=94 Score=24.59 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHh--hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHH
Q 043830 156 SEAAA--AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQM 217 (248)
Q Consensus 156 lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 217 (248)
+|+.. .|+|||+-- ..-.|.+.+..++.+.++|.+.|.+.-+
T Consensus 88 i~~l~~~tg~PVi~V~--------------------~k~P~~e~i~~Al~k~f~d~e~R~rii~ 131 (185)
T COG1628 88 IEALYKETGLPVIVVY--------------------RKKPDIERIESALRKHFDDAEERIRIIE 131 (185)
T ss_pred HHHHHHhhCCcEEEEE--------------------ecCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67766 789999721 1123555666666666666666554433
No 280
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=44.24 E-value=1.3e+02 Score=28.35 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=60.0
Q ss_pred EEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 82 TIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 82 lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
++++|.|-. ..+++.+++.++|.+......+....+.++=++.|.. .....++..||++++.++... + +
T Consensus 205 vii~G~g~~~a~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~-~-~--- 279 (578)
T PRK06546 205 TLFAGAGVRGAHAEVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFP-Y-D--- 279 (578)
T ss_pred EEEECcchHHHHHHHHHHHHHhCcceEECcccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCC-h-h---
Confidence 788888652 2478999999999986544432211112222333321 245678899999888655322 1 1
Q ss_pred HHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 156 SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 156 lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+....++|.-+. +- . .+......-.....|.......+...|.
T Consensus 280 --~~~~~~~~I~vd~--d~-~---~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 280 --QFLPDVRTAQVDI--DP-E---HLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred --hcCCCCcEEEEeC--CH-H---HhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 1223445664321 11 1 1111110012344788888888877775
No 281
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=44.13 E-value=1.6e+02 Score=27.54 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=57.2
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh----------hHHHHHHhhCCEEEEcCccCC
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL----------GELRQLYKLTPIAVIGGSFLP 148 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~----------~~l~~~y~~ad~~~v~~s~~e 148 (248)
++++|.+-. -.+++.+++.++|++......+....+..+-++.+.. .....+++.||++++.++...
T Consensus 217 vil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~ 296 (578)
T PRK06112 217 VVVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTN 296 (578)
T ss_pred EEEECCCccccchHHHHHHHHHHhCCCEEEcccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCC
Confidence 677886532 2478999999999986543332211111122222211 145678889999877554332
Q ss_pred CCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 149 GLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 149 ~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+ ...-.....-...+|.-+. +..++.. .-. .+....|+..+.+.+...+.
T Consensus 297 ~~-~~~~~~~~~~~~~~i~id~--d~~~~~~----~~~-~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 297 QN-GTDSWSLYPEQAQYIHIDV--DGEEVGR----NYE-ALRLVGDARLTLAALTDALR 347 (578)
T ss_pred cc-ccccccccCCCCeEEEEEC--ChHHhCc----ccc-ceEEEeCHHHHHHHHHHhhh
Confidence 11 1100111122344553221 1111111 011 13344788888777776664
No 282
>PLN02573 pyruvate decarboxylase
Probab=44.10 E-value=1.3e+02 Score=28.38 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEE----cC--hhHHHHHHhh
Q 043830 66 MLAVHKVLMQKNPNLVTIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVV----DT--LGELRQLYKL 136 (248)
Q Consensus 66 ll~a~~~l~~~~~~~~lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~----~~--~~~l~~~y~~ 136 (248)
+-++++.|.+-.. -++|+|.+-. -.+++.+++.++|++......+....+.++=++. +. ......++..
T Consensus 214 ~~~a~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~ 291 (578)
T PLN02573 214 VEAAAEFLNKAVK--PVLVGGPKLRVAKACKAFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVES 291 (578)
T ss_pred HHHHHHHHHhCCC--CEEEEChhhcccchHHHHHHHHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHh
Confidence 3344444443221 2677887542 3478999999999986544433211112221222 21 1245678899
Q ss_pred CCEEEEcCc
Q 043830 137 TPIAVIGGS 145 (248)
Q Consensus 137 ad~~~v~~s 145 (248)
||++++.++
T Consensus 292 aDlvl~lG~ 300 (578)
T PLN02573 292 ADAYLFAGP 300 (578)
T ss_pred CCEEEEECC
Confidence 998777554
No 283
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=43.58 E-value=1.8e+02 Score=23.82 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCC--ceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGE--VVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l--~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
..++.+.+ ..++...+-+-..+ ...+..+++++.|. ...+-.. +.+ +.+.+..++...|.+.+
T Consensus 82 ~~i~~~~~---aGad~It~H~Ea~~-~~~~~l~~Ik~~g~~~kaGlaln-----P~T------p~~~i~~~l~~vD~VLi 146 (228)
T PRK08091 82 EVAKACVA---AGADIVTLQVEQTH-DLALTIEWLAKQKTTVLIGLCLC-----PET------PISLLEPYLDQIDLIQI 146 (228)
T ss_pred HHHHHHHH---hCCCEEEEcccCcc-cHHHHHHHHHHCCCCceEEEEEC-----CCC------CHHHHHHHHhhcCEEEE
Confidence 45565533 34564333333222 23566677888886 4221110 111 34688899999999777
Q ss_pred cCccCCCCCCCCHHHH
Q 043830 143 GGSFLPGLAGHNISEA 158 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA 158 (248)
. |..+||||+.+++.
T Consensus 147 M-tV~PGfgGQ~f~~~ 161 (228)
T PRK08091 147 L-TLDPRTGTKAPSDL 161 (228)
T ss_pred E-EECCCCCCccccHH
Confidence 5 55689989876653
No 284
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=43.58 E-value=1.4e+02 Score=27.92 Aligned_cols=119 Identities=8% Similarity=-0.023 Sum_probs=59.5
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC---h--hHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT---L--GELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~---~--~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
++++|.+-. ..+++.+++.++|.+......+....+.++=++.|. . .....++..||++++.++....+ ..
T Consensus 205 vi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~-~~ 283 (558)
T TIGR00118 205 VILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDR-VT 283 (558)
T ss_pred EEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCcc-cc
Confidence 677887643 247899999999998654433321111222222231 1 24467889999988755533211 11
Q ss_pred CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 154 NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.-...+.-+.++|--+. +..++ ...-..-+....|+..+.+.+...+.
T Consensus 284 ~~~~~~~~~~~~i~id~--d~~~~----~~~~~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 284 GNLAKFAPNAKIIHIDI--DPAEI----GKNVRVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred CchhhcCCCCcEEEEeC--CHHHh----CCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 11222333456663221 11111 11000013444788887777766553
No 285
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=43.56 E-value=36 Score=29.50 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=20.4
Q ss_pred HHHhCCCeEEEEecCCCCCHHHHHHHH
Q 043830 73 LMQKNPNLVTIIVPRHPQHGKEIAQKL 99 (248)
Q Consensus 73 l~~~~~~~~lvivG~~~~~~~~l~~~~ 99 (248)
+.+++|+.+|++||+..+...++....
T Consensus 271 il~~~p~~kfvLVGDsGE~DpeIYae~ 297 (373)
T COG4850 271 ILRRYPDRKFVLVGDSGEHDPEIYAEM 297 (373)
T ss_pred HHHhCCCceEEEecCCCCcCHHHHHHH
Confidence 345789999999998777656776654
No 286
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=43.52 E-value=1.3e+02 Score=28.07 Aligned_cols=65 Identities=8% Similarity=-0.061 Sum_probs=38.9
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---C--hhHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---T--LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~--~~~l~~~y~~ad~~~v~~s~ 146 (248)
++|+|.+-. -.+++.+++.++|++......+.-..+.++=++.| . ......++..||++++.++.
T Consensus 214 vil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~ 286 (566)
T PRK07282 214 VILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSR 286 (566)
T ss_pred EEEECCCcCcccHHHHHHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCC
Confidence 788887653 23788899999999865544332111122222222 1 12456789999998775543
No 287
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=43.46 E-value=1.7e+02 Score=23.48 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=25.9
Q ss_pred EcChh-HHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHhhCC-cEE
Q 043830 124 VDTLG-ELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAAAGC-AVL 166 (248)
Q Consensus 124 ~~~~~-~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~-Pvi 166 (248)
...+. ....+...||.+++.|. |+|.. -++|++..+. |+.
T Consensus 97 ~~~~~~Rk~~~~~~ada~V~~pG---G~GTleEl~e~lt~~q~g~~ 139 (205)
T COG1611 97 GMDFAERKRAMVRSADAFIVLPG---GFGTLEELFEALTLGQTGVH 139 (205)
T ss_pred cCCHHHHHHHHHHhCCEEEEeCC---CcchHHHHHHHHHHhhCCcc
Confidence 33443 55678899999777542 23222 2689999888 766
No 288
>PRK08266 hypothetical protein; Provisional
Probab=42.97 E-value=1.8e+02 Score=27.04 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=36.7
Q ss_pred EEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|.+......+....+.++=++.+.. ....++..||++++.++
T Consensus 209 vIv~G~g~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~g~~-~~~~~~~~aDlvl~lG~ 272 (542)
T PRK08266 209 MIFVGGGAAGAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFA-AAYELWPQTDVVIGIGS 272 (542)
T ss_pred EEEECCChhhHHHHHHHHHHHHCCCEEEeccccccCCCCCccccCCH-HHHHHHHhCCEEEEeCC
Confidence 678887742 2367888999999986543332211111222333322 23467889999877554
No 289
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=42.40 E-value=80 Score=26.83 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---ChhHHHHHHhhCCE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---TLGELRQLYKLTPI 139 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~y~~ad~ 139 (248)
.+...+|+..+.++.++.+++|++++++. +++.+.... ..+++.+ ...||. +|+.||.
T Consensus 190 ~~Yy~~Ai~~i~~~~~~~~f~ifSDD~~w---~k~~l~~~~---------------~~~~~~~~~~~~~Dl~-lms~C~~ 250 (298)
T PF01531_consen 190 KDYYKKAIEYIREKVKNPKFFIFSDDIEW---CKENLKFSN---------------GDVYFSGNNSPYEDLY-LMSQCKH 250 (298)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCHHH---HHHHHhhcC---------------CcEEEECCCCHHHHHH-HHHhCCc
Confidence 46778999999888889999999996543 333332211 1122322 345675 5889999
Q ss_pred EEEcCcc
Q 043830 140 AVIGGSF 146 (248)
Q Consensus 140 ~~v~~s~ 146 (248)
.++..|.
T Consensus 251 ~IisnST 257 (298)
T PF01531_consen 251 FIISNST 257 (298)
T ss_pred EEECCCh
Confidence 8776543
No 290
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=42.37 E-value=1.6e+02 Score=23.35 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHh
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQK 101 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~ 101 (248)
.+.++.+++++..-.+.++-+|...+..+.|+.++..
T Consensus 124 ~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~ 160 (187)
T cd01452 124 DLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDA 160 (187)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHH
Confidence 3445555554432223333334332222444444433
No 291
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=42.31 E-value=1.8e+02 Score=25.47 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=66.0
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHhCC-CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHH
Q 043830 52 VWMASSIHRGEEKVMLAVHKVLMQKNP-NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGEL 130 (248)
Q Consensus 52 v~l~~~~~~~~~~~ll~a~~~l~~~~~-~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l 130 (248)
+.++|. .-+ ...++++.. .+ ++.++-+-+.. .+..++.++++|++. + .++
T Consensus 6 VgViG~-~~G--~~h~~al~~----~~~~~eLvaV~d~~--~erA~~~A~~~gi~~----------------y----~~~ 56 (343)
T TIGR01761 6 VVVCGT-RFG--QFYLAAFAA----APERFELAGILAQG--SERSRALAHRLGVPL----------------Y----CEV 56 (343)
T ss_pred EEEEeH-HHH--HHHHHHHHh----CCCCcEEEEEEcCC--HHHHHHHHHHhCCCc----------------c----CCH
Confidence 555554 222 235566543 24 56665544421 245666777777541 1 234
Q ss_pred HHHHhhCCEEEEcC-ccCCC-CCCCCHHHHHhhCCcEEECCCCC--ChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 131 RQLYKLTPIAVIGG-SFLPG-LAGHNISEAAAAGCAVLTGPHIG--HYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 131 ~~~y~~ad~~~v~~-s~~e~-~gg~~~lEA~a~G~Pvi~~~~~~--~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
.+++..-|+.+|.- +..++ .......+|+..|+.|++=.... ...++++...+.| ..+.+........++.+++
T Consensus 57 eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g--~~l~v~~f~p~~~~vr~~i 134 (343)
T TIGR01761 57 EELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQG--RRYLVNTFYPHLPAVRRFI 134 (343)
T ss_pred HHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcC--CEEEEEecCHHHHHHHHHH
Confidence 55566667666632 22222 11123689999999999822221 2223444444444 4555554555666677777
Q ss_pred hCH
Q 043830 207 SDA 209 (248)
Q Consensus 207 ~~~ 209 (248)
++.
T Consensus 135 ~~~ 137 (343)
T TIGR01761 135 EYA 137 (343)
T ss_pred Hcc
Confidence 655
No 292
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.08 E-value=2e+02 Score=23.93 Aligned_cols=104 Identities=9% Similarity=0.036 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecC-------------CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHH
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPR-------------HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGEL 130 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~-------------~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l 130 (248)
+.+++....+++. ++.++--|. |.+....|++..++.|++.... ++ ....+
T Consensus 29 e~~~~~a~~~~~~--g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Te-----------v~---d~~~v 92 (250)
T PRK13397 29 DHIRLAASSAKKL--GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSE-----------IM---SERQL 92 (250)
T ss_pred HHHHHHHHHHHHc--CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEe-----------eC---CHHHH
Confidence 4677776666543 355555542 2222466777788888874211 10 12355
Q ss_pred HHHHhhCCEEEEcCccCCCCCCCCHHHH-HhhCCcEEECCC-CCChH---HHHHHHHhcCC
Q 043830 131 RQLYKLTPIAVIGGSFLPGLAGHNISEA-AAAGCAVLTGPH-IGHYS---NMVSAMQRLNP 186 (248)
Q Consensus 131 ~~~y~~ad~~~v~~s~~e~~gg~~~lEA-~a~G~Pvi~~~~-~~~~~---~~~~~~~~~g~ 186 (248)
..+...+|++=+++...- -..++++ ...|+||++... ..... .+++.+...|.
T Consensus 93 ~~~~e~vdilqIgs~~~~---n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn 150 (250)
T PRK13397 93 EEAYDYLDVIQVGARNMQ---NFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGK 150 (250)
T ss_pred HHHHhcCCEEEECccccc---CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 555667999766432221 1234555 568999999654 22333 34556655554
No 293
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=42.02 E-value=65 Score=26.85 Aligned_cols=36 Identities=8% Similarity=-0.042 Sum_probs=24.7
Q ss_pred HHHHHHHHhC--CCeEEEEecCCCCCHHHHHHHHHhcCCceE
Q 043830 68 AVHKVLMQKN--PNLVTIIVPRHPQHGKEIAQKLQKEGEVVA 107 (248)
Q Consensus 68 ~a~~~l~~~~--~~~~lvivG~~~~~~~~l~~~~~~~~l~~~ 107 (248)
+.|..++.++ |+..+++||+|+++. +.++.++.+..
T Consensus 217 ~cFe~I~~Rfg~p~~~f~~IGDG~eEe----~aAk~l~wPFw 254 (274)
T TIGR01658 217 QCFKWIKERFGHPKVRFCAIGDGWEEC----TAAQAMNWPFV 254 (274)
T ss_pred HHHHHHHHHhCCCCceEEEeCCChhHH----HHHHhcCCCeE
Confidence 4566666553 589999999997652 34567777653
No 294
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=41.60 E-value=1.7e+02 Score=22.76 Aligned_cols=110 Identities=12% Similarity=0.175 Sum_probs=53.4
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++++.+.+.....+...+...|.. |.......+....+. ..|++++.... ++..|..+++.
T Consensus 4 ~iLlv~d~~~~~~~l~~~l~~~~~~---------------v~~~~~~~~~~~~~~~~~~dlvild~~l-~~~~g~~~~~~ 67 (221)
T PRK10766 4 HILVVEDEPVTRARLQGYFEQEGYT---------------VSEAASGAGMREIMQNQHVDLILLDINL-PGEDGLMLTRE 67 (221)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCE---------------EEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHH
Confidence 4566666554434555555554432 122222222222222 35776663322 22223344443
Q ss_pred Hh--hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 159 AA--AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 159 ~a--~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+. ...|+|+-....+.......+ +.| .+++..+-+.++|...+..++.
T Consensus 68 lr~~~~~~ii~l~~~~~~~~~~~~l-~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 68 LRSRSTVGIILVTGRTDSIDRIVGL-EMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred HHhCCCCCEEEEECCCcHHHHHHHH-HcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 32 367888632222333333333 233 2355667788899888877664
No 295
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=40.62 E-value=2.1e+02 Score=26.70 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=36.8
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccC-CCCCCccEEEEc---Chh--HHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHE-KLMPRTNVYVVD---TLG--ELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~v~~~~---~~~--~l~~~y~~ad~~~v~~s 145 (248)
++|+|.+-. -.+++.+++.++|++......+. ..+++.. ++.| ..+ .....+..||++++.++
T Consensus 211 vil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp-~~~G~~g~~~~~~~~~~~~~aDlvl~lG~ 282 (572)
T PRK06456 211 IILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHP-LYFGPMGYYGRAEASMAALESDAMLVVGA 282 (572)
T ss_pred EEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCc-cccccCCCCCCHHHHHHHHhCCEEEEECC
Confidence 788887643 34788899999999865433321 1111112 2222 111 34567889999877554
No 296
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.44 E-value=2.6e+02 Score=24.64 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecC-------------CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhH
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPR-------------HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGE 129 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~-------------~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~ 129 (248)
.+.+++....+++. ..+++--|. |.+..+.+.+...+.|+..... ++ ...+
T Consensus 114 ~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~te-----------v~---d~~~ 177 (352)
T PRK13396 114 EEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITE-----------VM---DAAD 177 (352)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEe-----------eC---CHHH
Confidence 46788888888765 345554432 1111244555566888863211 11 1234
Q ss_pred HHHHHhhCCEEEEcCccCCCCCCCCHHHH-HhhCCcEEECCCCC-ChHH---HHHHHHhcCC
Q 043830 130 LRQLYKLTPIAVIGGSFLPGLAGHNISEA-AAAGCAVLTGPHIG-HYSN---MVSAMQRLNP 186 (248)
Q Consensus 130 l~~~y~~ad~~~v~~s~~e~~gg~~~lEA-~a~G~Pvi~~~~~~-~~~~---~~~~~~~~g~ 186 (248)
+..+...+|++-+++...-. ..++++ ...|+||+...... ...| +++.+...|.
T Consensus 178 v~~~~~~~d~lqIga~~~~n---~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn 236 (352)
T PRK13396 178 LEKIAEVADVIQVGARNMQN---FSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGN 236 (352)
T ss_pred HHHHHhhCCeEEECcccccC---HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 55555668997775432221 234554 57899999965443 3333 4555555444
No 297
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=40.22 E-value=1.8e+02 Score=22.67 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=36.3
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++.... ++..|..+++.+. ...|+|+-....+.......+..+..+++..+-+.++|...+..++.
T Consensus 46 ~dlvild~~l-~~~~g~~~~~~lr~~~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 46 PDLIILDLGL-PDGDGIEFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 5776663333 2223444444333 35788863222233233333322222355667788999888887764
No 298
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=40.17 E-value=1.7e+02 Score=27.67 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=37.6
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC---h--hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT---L--GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~---~--~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|++......+....+.++=++.|. . .....+++.||++++.++
T Consensus 235 lIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~ 306 (612)
T PRK07789 235 VLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGA 306 (612)
T ss_pred EEEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECC
Confidence 678887653 247889999999998655433321111222222221 1 134567888999877554
No 299
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=39.70 E-value=1.8e+02 Score=26.84 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPI 139 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~ 139 (248)
...+.+|.+.|++... .|+|+|.+-. ..++|++.+..+|++.--.-.+.-.-++++=+.+ ...-...++.||+
T Consensus 204 ~s~i~~av~llk~AKr--PLlvvGkgAa~~~ae~~l~~~Ve~~glPflptpMgKGll~d~hPl~v--~~aRS~ALk~ADv 279 (571)
T KOG1185|consen 204 PSQIQKAVQLLKSAKR--PLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTPMGKGLLPDNHPLNV--SSARSLALKKADV 279 (571)
T ss_pred HHHHHHHHHHHHhcCC--cEEEEecccccCccHHHHHHHHHhcCCCcccCcccccCCCCCCchhh--hHHHHHHHhhCCE
Confidence 3566777776665322 2889998632 3378999999999984221111100011111111 1244677999999
Q ss_pred EEEcCcc
Q 043830 140 AVIGGSF 146 (248)
Q Consensus 140 ~~v~~s~ 146 (248)
+++.+..
T Consensus 280 vll~Gar 286 (571)
T KOG1185|consen 280 VLLAGAR 286 (571)
T ss_pred EEEecce
Confidence 8885543
No 300
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=39.53 E-value=73 Score=23.10 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=23.3
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPH 170 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~ 170 (248)
++..+...+|+++-++.- +.. -..+-.++.+|+|+|+|..
T Consensus 60 ~l~~~~~~~DVvIDfT~p-~~~-~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 60 DLEELLEEADVVIDFTNP-DAV-YDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp -HHHHTTH-SEEEEES-H-HHH-HHHHHHHHHHT-EEEEE-S
T ss_pred hHHHhcccCCEEEEcCCh-HHh-HHHHHHHHhCCCCEEEECC
Confidence 778888889997654421 211 1235667889999999753
No 301
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=39.32 E-value=94 Score=28.63 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCH-HHHHHHHHhcCCceEEecccCCCCCCccEE-EEcChhHHHHHHhhCCEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHG-KEIAQKLQKEGEVVALRSRHEKLMPRTNVY-VVDTLGELRQLYKLTPIAV 141 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~-~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~~~~l~~~y~~ad~~~ 141 (248)
...+..++....++|...+.|-- ||+.. -.-+..+.++... .+|. +...+. --.+++..|-++
T Consensus 166 ~~~l~m~~~ai~enp~a~i~~kt-hpdvl~gkkqg~lt~~~~~-------------~r~~ll~edfn-pisll~~~dkvy 230 (671)
T COG3563 166 STFLLMFQTAINENPQADIWVKT-HPDVLCGKKQGYLTQLSQQ-------------HRVHLLAEDFN-PISLLQNVDKVY 230 (671)
T ss_pred hHHHHHHHHHHhcCCcccEEEEe-CCchhcCcccchhhhhccC-------------ceEEEecccCC-hHHHHHhcceeE
Confidence 35666777777788876655543 23321 0001111121111 2333 333332 345677777766
Q ss_pred EcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 142 IGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 142 v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+-.|-. | +||+.||+|+++
T Consensus 231 ~~ts~m-g------feall~~~~~~~ 249 (671)
T COG3563 231 CVTSQM-G------FEALLCGKPLTT 249 (671)
T ss_pred Eeeccc-c------HHHHhcCCceee
Confidence 644432 2 599999999997
No 302
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=39.17 E-value=1.6e+02 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEe
Q 043830 65 VMLAVHKVLMQKNPNLVTIIV 85 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lviv 85 (248)
...+++..+++.+|++++.++
T Consensus 57 waae~vl~LK~~yp~ikL~~v 77 (177)
T PF06908_consen 57 WAAEVVLELKKEYPEIKLALV 77 (177)
T ss_dssp HHHHHHHTTTTT-TT-EEEEE
T ss_pred HHHHHHHHHHhhhhheEEEEE
Confidence 557777788999999998876
No 303
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=38.65 E-value=1.2e+02 Score=20.21 Aligned_cols=55 Identities=18% Similarity=0.084 Sum_probs=27.9
Q ss_pred CeEEE-EeCCCcchHHHHHHHHHHHHHhCC---CeEEEEecCCCCCHHHHHHHHHhcCCc
Q 043830 50 RQVWM-ASSIHRGEEKVMLAVHKVLMQKNP---NLVTIIVPRHPQHGKEIAQKLQKEGEV 105 (248)
Q Consensus 50 ~~v~l-~~~~~~~~~~~ll~a~~~l~~~~~---~~~lvivG~~~~~~~~l~~~~~~~~l~ 105 (248)
+++++ +.+.+-..=...++.+.++.++++ ++.+|.|..+... ++.++.+++.+..
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~-~~~~~~~~~~~~~ 60 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDE-EEWKKFLKKNNFP 60 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSH-HHHHHHHHTCTTS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCH-HHHHHHHHhcCCC
Confidence 45444 444552211223333344444444 7888888775443 6777777776443
No 304
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.57 E-value=1.8e+02 Score=27.33 Aligned_cols=64 Identities=8% Similarity=-0.044 Sum_probs=37.6
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.+++++......+....+.++=++.|.. .....++..||++++.++
T Consensus 218 vIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~ 289 (570)
T PRK06725 218 LLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGV 289 (570)
T ss_pred EEEECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCC
Confidence 778887653 2478999999999986543332211111221222211 235678899999877554
No 305
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=38.08 E-value=54 Score=22.66 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhhhcC
Q 043830 197 ELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFRRALC 248 (248)
Q Consensus 197 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 248 (248)
...+.+.++|+||+.++-+.+...+. ...++++.+.-+.+++.+|-.|
T Consensus 20 ~~~~l~~~vl~dp~V~~Fl~~h~~eL----t~~~i~rsl~kLyEy~~e~~~~ 67 (94)
T PF07319_consen 20 RYEQLKQEVLSDPEVQAFLQEHQPEL----TQEMIERSLSKLYEYVSERKKC 67 (94)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHSTTT------HHHHHHTHHHHHHHHHS-SS-
T ss_pred HHHHHHHHHHcCHHHHHHHHHhHHhc----CHHHHHHHHHHHHHHHHHHHHH
Confidence 44555778899999876655532221 3688888888888888888766
No 306
>PRK13557 histidine kinase; Provisional
Probab=37.93 E-value=3.1e+02 Score=24.77 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=55.2
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHH-h--hCCEEEEcCccCCCCCCCCHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLY-K--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y-~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
+++|+.+++.....+.+.++..|... .....-.+.-..+ . ..|++++.........|...+.
T Consensus 417 ~iliv~~~~~~~~~l~~~l~~~~~~v---------------~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~ 481 (540)
T PRK13557 417 TILIVDDRPDVAELARMILEDFGYRT---------------LVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAR 481 (540)
T ss_pred eEEEEcCcHHHHHHHHHHHHhcCCeE---------------EEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHH
Confidence 57777776554455666666555431 2222222333333 2 3688777443321112333444
Q ss_pred HHh---hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA---AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a---~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. ...|+|+........... .....| .+++..+-+.+.|...+..++..
T Consensus 482 ~l~~~~~~~~ii~~~~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 482 EARRRQPKIKVLLTTGYAEASIER-TDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred HHHHhCCCCcEEEEcCCCchhhhh-hhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 443 467887633222222222 122222 22455567888898888776654
No 307
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=37.93 E-value=2e+02 Score=22.51 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCCCe-EEEEecC--CCCCHHHHHHHHHhcCCceE
Q 043830 64 KVMLAVHKVLMQKNPNL-VTIIVPR--HPQHGKEIAQKLQKEGEVVA 107 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~-~lvivG~--~~~~~~~l~~~~~~~~l~~~ 107 (248)
+.+-+|.+.+.. .|.+ .||++|+ |..-.++++++-++.|++..
T Consensus 127 E~laEAVkAV~r-LpRv~iLVLAGslMGGkIteaVk~lr~~hgI~VI 172 (218)
T COG1707 127 EELAEAVKAVAR-LPRVGILVLAGSLMGGKITEAVKELREEHGIPVI 172 (218)
T ss_pred HHHHHHHHHHhc-cccceeEEEecccccchHHHHHHHHHHhcCCeEE
Confidence 467777776643 4543 5777886 33333667777667787643
No 308
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=37.64 E-value=1.6e+02 Score=26.40 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=56.0
Q ss_pred EEEecCCCC--CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh------hHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 82 TIIVPRHPQ--HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL------GELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 82 lvivG~~~~--~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~------~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
++|+|.+-. ..+++.+++++++++......+.... ..+ .+.+.. .....++ .+|++++.++... ..
T Consensus 215 vi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~---~~ 288 (432)
T TIGR00173 215 VIVAGPLPPAEDAEALAALAEALGWPLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPV---SK 288 (432)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcc---hh
Confidence 677887653 24778889999999865433332111 123 333311 1233445 8999887654321 11
Q ss_pred CHHHHH-hhCCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 154 NISEAA-AAGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 154 ~~lEA~-a~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
+...-+ .-+..+|- ..+...+ ... ... -.....|.....+++...+..
T Consensus 289 ~~~~~~~~~~~~~i~vd~d~~~~----~~~--~~~-~~~i~~D~~~~l~~l~~~~~~ 338 (432)
T TIGR00173 289 RLRQWLARQPAEYWVVDPDPGWL----DPS--HHA-TTRLEASPAEFAEALAGLLKN 338 (432)
T ss_pred HHHHHHhCCCCcEEEECCCCCcc----CCC--CCc-eEEEEECHHHHHHHhhhccCC
Confidence 222111 12334553 2222111 000 000 133347888888878777743
No 309
>PRK08322 acetolactate synthase; Reviewed
Probab=37.50 E-value=2.2e+02 Score=26.43 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=37.1
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. ..+++.+++.+++++......+....+.++=++.+.. .....++..||++++.++
T Consensus 200 viv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~ 271 (547)
T PRK08322 200 LILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGH 271 (547)
T ss_pred EEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECC
Confidence 678887642 2378889999999986544333211111111222221 124567889999887554
No 310
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=37.43 E-value=1.8e+02 Score=22.09 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=35.3
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.|++++...... ..|..+++.+. ...|+|+-....+.......+..+..+++..+.+.+.|...+..++..
T Consensus 50 ~dlvild~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 50 VDLIIMDIDLPG-TDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHhCCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 577665433322 22444444443 246776532222332333333222223555567888888888877664
No 311
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=37.30 E-value=2.2e+02 Score=22.84 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=39.6
Q ss_pred cCCCCCCCCH---HHHHhhCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 146 FLPGLAGHNI---SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 146 ~~e~~gg~~~---lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
..+|..|+.+ +......+|||+-..-|+.+-.++.+. .|. -++-.|-+.+.|.+++..-+..
T Consensus 57 rMPg~sGlelq~~L~~~~~~~PVIfiTGhgDIpmaV~AmK-~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 57 RMPGMSGLELQDRLAERGIRLPVIFLTGHGDIPMAVQAMK-AGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred CCCCCchHHHHHHHHhcCCCCCEEEEeCCCChHHHHHHHH-cchhhHHhCCCchHHHHHHHHHHHHH
Confidence 3355556665 556667789997433457776676664 341 1223456888899998888764
No 312
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=37.18 E-value=2.5e+02 Score=23.50 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=36.4
Q ss_pred hhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC-CHHHHHHHHHHhhhCH
Q 043830 135 KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS-GKSELEEALSQLFSDA 209 (248)
Q Consensus 135 ~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~l~~~i~~ll~~~ 209 (248)
..-|++|+.....+ -..+.||..+|+|||+--++..-+. .++ +.++.+ |.-.-...+..++.+.
T Consensus 156 ~~Pd~iii~d~~~~---~~ai~Ea~kl~IPiIaivDTn~dp~----~Id----ypIP~Ndds~~si~li~~~l~~a 220 (258)
T PRK05299 156 GLPDALFVVDPNKE---HIAVKEARKLGIPVVAIVDTNCDPD----GVD----YPIPGNDDAIRSIKLYTSKIADA 220 (258)
T ss_pred cCCCEEEEeCCCcc---HHHHHHHHHhCCCEEEEeeCCCCCc----ccc----eeeecCCchHHHHHHHHHHHHHH
Confidence 45788777543332 3568999999999997222211111 112 456663 4555555666666543
No 313
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=37.00 E-value=2e+02 Score=22.39 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=34.0
Q ss_pred hCCEEEEcCccCCCCCCCCHHHHHhh--CCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 136 LTPIAVIGGSFLPGLAGHNISEAAAA--GCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~~~lEA~a~--G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
..|++++.... ++..|..+++.+.. ..|+|+-....+.......+ +.|. +++..+-+.++|...+..++.
T Consensus 44 ~~d~vl~d~~~-~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~-~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 44 SIDLLLLDVMM-PKKNGIDTLKELRQTHQTPVIMLTARGSELDRVLGL-ELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred CCCEEEEeCCC-CCCcHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHH-HcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 35776654333 22223334433332 26777532222322233333 3332 345556788888888887765
No 314
>PRK14057 epimerase; Provisional
Probab=36.75 E-value=2.5e+02 Score=23.45 Aligned_cols=85 Identities=11% Similarity=-0.016 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---ChhHHHHHHhhCCEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---TLGELRQLYKLTPIA 140 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~y~~ad~~ 140 (248)
+..++.+.+ ..++...+-+-.. .......+++++.|.... . +... -..-+-++ +.+.+..++...|.+
T Consensus 88 ~~~i~~~~~---aGad~It~H~Ea~-~~~~~~l~~Ir~~G~k~~-~--~~~~--~kaGlAlnP~Tp~e~i~~~l~~vD~V 158 (254)
T PRK14057 88 WTAAQACVK---AGAHCITLQAEGD-IHLHHTLSWLGQQTVPVI-G--GEMP--VIRGISLCPATPLDVIIPILSDVEVI 158 (254)
T ss_pred HHHHHHHHH---hCCCEEEEeeccc-cCHHHHHHHHHHcCCCcc-c--cccc--ceeEEEECCCCCHHHHHHHHHhCCEE
Confidence 345666543 3466433333322 233566677888876300 0 0000 00001111 356889999999997
Q ss_pred EEcCccCCCCCCCCHHHH
Q 043830 141 VIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA 158 (248)
.+. |..+||+|+.+++.
T Consensus 159 LvM-tV~PGfgGQ~Fi~~ 175 (254)
T PRK14057 159 QLL-AVNPGYGSKMRSSD 175 (254)
T ss_pred EEE-EECCCCCchhccHH
Confidence 765 55689999877663
No 315
>PRK07524 hypothetical protein; Provisional
Probab=36.54 E-value=2e+02 Score=26.57 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=37.5
Q ss_pred EEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---ChhHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---TLGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.+++.+......+....+.++-.+.| .......++..||++++.++
T Consensus 205 vil~G~g~~~a~~~l~~lae~l~~pV~tt~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~ 272 (535)
T PRK07524 205 LILAGGGALAAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGT 272 (535)
T ss_pred EEEECCChHHHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCC
Confidence 677887643 23678899999999855433322111111212222 22345677899999887554
No 316
>PRK07064 hypothetical protein; Provisional
Probab=36.51 E-value=2e+02 Score=26.61 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=37.3
Q ss_pred EEEecCCC-CCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh---hHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHP-QHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL---GELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~---~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+- .-.+++.+++. ++++......+....+..+=++.|.+ .....++..||++++.++.
T Consensus 207 vi~~G~g~~~a~~~l~~lae-~~~pv~~t~~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~ 274 (544)
T PRK07064 207 LLWLGGGARHAGAEVKRLVD-LGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSR 274 (544)
T ss_pred EEEECCChHhHHHHHHHHHH-cCCCEEEccCccccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCC
Confidence 78888764 23367888888 99986544333211111221233322 2456778899998875553
No 317
>PRK08611 pyruvate oxidase; Provisional
Probab=36.35 E-value=2.4e+02 Score=26.49 Aligned_cols=65 Identities=9% Similarity=0.137 Sum_probs=37.8
Q ss_pred EEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC---h--hHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT---L--GELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~---~--~~l~~~y~~ad~~~v~~s~ 146 (248)
++|+|.+-. -.+++.++++++|++......+....+.++=++.|. . .....+++.||++++.++.
T Consensus 207 vil~G~g~~~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~ 277 (576)
T PRK08611 207 VILAGLGAKHAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTN 277 (576)
T ss_pred EEEECcCcchHHHHHHHHHHHhCCCEEEccccccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCC
Confidence 778887643 236789999999998654433321111112122221 1 2345678899998876553
No 318
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=36.35 E-value=2e+02 Score=22.19 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc-ChhHHHHHHhhCCE
Q 043830 61 GEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-TLGELRQLYKLTPI 139 (248)
Q Consensus 61 ~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~y~~ad~ 139 (248)
-++...|+|+..+....-|. ++|+.++.+ ...|...+++.|.. |+..+ ...--..+-++||-
T Consensus 89 ~Dv~laIDame~~~~~~iD~-~vLvSgD~D-F~~Lv~~lre~G~~---------------V~v~g~~~~ts~~L~~acd~ 151 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPNIDA-VALVTRDAD-FLPVINKAKENGKE---------------TIVIGAEPGFSTALQNSADI 151 (160)
T ss_pred ccHHHHHHHHHHhccCCCCE-EEEEeccHh-HHHHHHHHHHCCCE---------------EEEEeCCCCChHHHHHhcCe
Confidence 35678899998774433455 444443333 37788888888775 33333 11223467888997
Q ss_pred E
Q 043830 140 A 140 (248)
Q Consensus 140 ~ 140 (248)
+
T Consensus 152 F 152 (160)
T TIGR00288 152 A 152 (160)
T ss_pred E
Confidence 3
No 319
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.32 E-value=2.8e+02 Score=25.07 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=50.0
Q ss_pred hHHHHHHhhCCEEEEcCccCCCCCCCCHHH-----HHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHH
Q 043830 128 GELRQLYKLTPIAVIGGSFLPGLAGHNISE-----AAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEAL 202 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~~s~~e~~gg~~~lE-----A~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i 202 (248)
..+...+...|+++ .+.+.+ |.++..+ |=..|+||++-|.+.+|. -+ .| +.....|..++.+++
T Consensus 135 ~~~~~~l~~~~~vV-LSDY~K--G~L~~~q~~I~~ar~~~~pVLvDPKg~Df~-~Y-----~G--AtLiTPN~~E~~~~v 203 (467)
T COG2870 135 EKIKNALKSFDALV-LSDYAK--GVLTNVQKMIDLAREAGIPVLVDPKGKDFE-KY-----RG--ATLITPNLKEFEEAV 203 (467)
T ss_pred HHHHHHhhcCCEEE-Eecccc--ccchhHHHHHHHHHHcCCcEEECCCCcchh-hh-----CC--CeecCCCHHHHHHHH
Confidence 35566778899954 455655 3555333 346899999988776652 11 22 445556777887777
Q ss_pred HHhhhCHHHHHHHHHHHHHHHHH
Q 043830 203 SQLFSDARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 203 ~~ll~~~~~~~~~~~~~~~~~~~ 225 (248)
....++ +.+.+.+++..+.
T Consensus 204 g~~~~e----~el~~~g~kL~~~ 222 (467)
T COG2870 204 GKCKSE----EELEERGQKLKEE 222 (467)
T ss_pred cccccH----HHHHHHHHHHHHh
Confidence 766654 2334444444443
No 320
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=36.20 E-value=2.4e+02 Score=26.40 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=37.9
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++|+|.+-. ..+++.+++.++|++......+...-+..+=++.+.. .....+++.||++++.++
T Consensus 219 vIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~ 290 (571)
T PRK07710 219 VILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGA 290 (571)
T ss_pred EEEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCC
Confidence 788897632 2478889999999986543333111111221222321 246678899999877554
No 321
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=36.18 E-value=2e+02 Score=26.88 Aligned_cols=65 Identities=11% Similarity=0.021 Sum_probs=37.1
Q ss_pred EEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC---h--hHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT---L--GELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~---~--~~l~~~y~~ad~~~v~~s~ 146 (248)
++|+|.+-. ..+++.+++.++|++......+....+.++=++.+. . .....+++.||++++.++.
T Consensus 205 vii~G~g~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~ 275 (574)
T PRK09124 205 TLLCGSGCAGAHDELVALAETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTD 275 (574)
T ss_pred EEEECcChHhHHHHHHHHHHHhCCceEEcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCC
Confidence 678887643 237788999999998654333221111122122221 1 1335678899998886653
No 322
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=35.97 E-value=2e+02 Score=21.94 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=11.8
Q ss_pred eEEEcCCHHHHHHHHHHhhh
Q 043830 188 SVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll~ 207 (248)
++..+.+.++|..++..++.
T Consensus 99 ~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 99 FVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred EEecCCCHHHHHHHHHHHHc
Confidence 34444566677766666653
No 323
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.84 E-value=2.7e+02 Score=26.17 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=37.8
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---Ch--hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---TL--GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~~--~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|++......+.-..+.++=++.| .. .....++..||++++.++
T Consensus 225 vil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~ 296 (587)
T PRK06965 225 YIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGA 296 (587)
T ss_pred EEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECC
Confidence 678887643 34789999999999865443332111112212222 11 234568899999877554
No 324
>PRK05858 hypothetical protein; Provisional
Probab=35.81 E-value=2.5e+02 Score=26.09 Aligned_cols=115 Identities=7% Similarity=-0.044 Sum_probs=57.1
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHH
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
++++|.+-. -.+++.+++.++|++......+....+.++=++.+ ....+++..||++++.++..+.. .. ...
T Consensus 207 vil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~--~~~~~~l~~aD~vl~vG~~~~~~-~~--~~~ 281 (542)
T PRK05858 207 VIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFS--RARGKALGEADVVLVVGVPMDFR-LG--FGV 281 (542)
T ss_pred EEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhh--HHHHHHHHhCCEEEEECCCCccc-cc--ccc
Confidence 677887532 24788999999999865433322111112222222 23456789999988765532211 11 111
Q ss_pred HhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 159 AAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 159 ~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.-+..+|.-+. +- ......... ......|..++..++.+.+.
T Consensus 282 ~~~~~~~i~id~--d~-~~~~~~~~~---~~~i~~d~~~~l~~L~~~l~ 324 (542)
T PRK05858 282 FGGTAQLVHVDD--AP-PQRAHHRPV---AAGLYGDLSAILSALAGAGG 324 (542)
T ss_pred cCCCCEEEEECC--CH-HHhcCCCCC---ceEEeCCHHHHHHHHHHhcc
Confidence 222355664321 11 111110011 13344788888777776664
No 325
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=35.79 E-value=3.8e+02 Score=25.21 Aligned_cols=118 Identities=10% Similarity=-0.013 Sum_probs=58.5
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---Ch--hHHHHHHhhCCEEEEcCc-cCCCCCC
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---TL--GELRQLYKLTPIAVIGGS-FLPGLAG 152 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~~--~~l~~~y~~ad~~~v~~s-~~e~~gg 152 (248)
++++|.+-. -.+++.+++.++|++......+....+.++=++.| .. .....++..||++++.++ +.+ + .
T Consensus 221 vil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~-~-~ 298 (585)
T CHL00099 221 LLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDD-R-V 298 (585)
T ss_pred EEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcc-c-c
Confidence 678887642 34789999999999865433322111122222223 21 234567899999877554 332 1 1
Q ss_pred CCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 153 HNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
..-...+.-+..+|.-+. +- +. +......-+....|+..+..++...+.
T Consensus 299 ~~~~~~~~~~~~~i~id~--d~-~~---i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 299 TGKLDEFACNAQVIHIDI--DP-AE---IGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred cCCHhHcCCCCeEEEEEC--CH-HH---hCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 111222333444553211 11 11 111110013445788887777776664
No 326
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=35.72 E-value=1e+02 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHh
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQR 183 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~ 183 (248)
+-+-...|+|||+..+....++.++-+..
T Consensus 69 i~~I~~~G~PviVAtDV~p~P~~V~Kia~ 97 (138)
T PF04312_consen 69 IEWISEYGKPVIVATDVSPPPETVKKIAR 97 (138)
T ss_pred HHHHHHcCCEEEEEecCCCCcHHHHHHHH
Confidence 44557799999986666667776665443
No 327
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=35.63 E-value=2.1e+02 Score=26.74 Aligned_cols=65 Identities=8% Similarity=-0.030 Sum_probs=37.8
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-----hhHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-----LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-----~~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+-. ..+++.+++.++|++......+....+.++=++.|. ......+++.||++++.++.
T Consensus 211 vil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~ 283 (561)
T PRK06048 211 IIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGAR 283 (561)
T ss_pred EEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCC
Confidence 678887543 247888999999998654433221111111122221 12346688999998875553
No 328
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=35.58 E-value=28 Score=23.68 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCCCCeEEcCC
Q 043830 2 TLQAIRFQLLEASPFTINFSGD 23 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn 23 (248)
...+++|...|+++++|.+.|.
T Consensus 57 ~~V~~~L~~~gi~~~ri~~~~~ 78 (97)
T PF00691_consen 57 EAVKQYLVENGIPPERISVVGY 78 (97)
T ss_dssp HHHHHHHHHTTSSGGGEEEEEE
T ss_pred HHHHHHHHHcCCChHhEEEEEE
Confidence 4678899999999999988764
No 329
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=35.49 E-value=1.3e+02 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=21.4
Q ss_pred HHHHHHhhC--CEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 129 ELRQLYKLT--PIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~a--d~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.+..+++.- |++++.+...+++ -..+=|..+|+|++.
T Consensus 77 ~l~~~l~~~~pDiv~~~gd~~~~l--a~a~aa~~~~ipv~h 115 (365)
T TIGR00236 77 GLEELLLEEKPDIVLVQGDTTTTL--AGALAAFYLQIPVGH 115 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHH--HHHHHHHHhCCCEEE
Confidence 445555553 8877765433321 123556778999984
No 330
>PLN03029 type-a response regulator protein; Provisional
Probab=35.48 E-value=2.3e+02 Score=22.69 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=24.0
Q ss_pred hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 161 AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 161 ~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
..+|||+-..........+.+..+..+++..+-+..+|...+..++.
T Consensus 101 ~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~ 147 (222)
T PLN03029 101 RNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMK 147 (222)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHH
Confidence 36788863222233333333322222355556677788666655554
No 331
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=35.44 E-value=3.1e+02 Score=24.16 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecC-------------CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhH
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPR-------------HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGE 129 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~-------------~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~ 129 (248)
.+.+++.+..++.. .++++-.|. +.+....+.+.+++.|+..... ++ ....
T Consensus 131 ~~~~~~~A~~lk~~--g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~-----------v~---d~~~ 194 (360)
T PRK12595 131 YEQVEAVAKALKAK--GLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISE-----------IV---NPAD 194 (360)
T ss_pred HHHHHHHHHHHHHc--CCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEe-----------eC---CHHH
Confidence 45677877777653 344444441 2223356778888998873211 00 1235
Q ss_pred HHHHHhhCCEEEEcCccCCCCCCCCH-HHHHhhCCcEEECCCC-CChHH---HHHHHHhcCC
Q 043830 130 LRQLYKLTPIAVIGGSFLPGLAGHNI-SEAAAAGCAVLTGPHI-GHYSN---MVSAMQRLNP 186 (248)
Q Consensus 130 l~~~y~~ad~~~v~~s~~e~~gg~~~-lEA~a~G~Pvi~~~~~-~~~~~---~~~~~~~~g~ 186 (248)
+..+...+|++-+++...- -..+ -++...|+||+.+... ....| +++.+...|.
T Consensus 195 ~~~l~~~vd~lkI~s~~~~---n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn 253 (360)
T PRK12595 195 VEVALDYVDVIQIGARNMQ---NFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGN 253 (360)
T ss_pred HHHHHHhCCeEEECccccc---CHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 5556666999777543221 1234 5556789999997654 24443 4555555454
No 332
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=35.36 E-value=2.7e+02 Score=23.43 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCCeEEEEe--C-CCcchHHHHHHHHHHHHHhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEE
Q 043830 48 AHRQVWMAS--S-IHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYV 123 (248)
Q Consensus 48 ~~~~v~l~~--~-~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~ 123 (248)
.+-|+++.+ . .+..+++.+++.+++ ..+.=+|+++-|. ..+++...+++.|+.. |++
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~-----~GvdGlivpDLP~ee~~~~~~~~~~~gi~~--------------I~l 153 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKE-----AGVDGLLVPDLPPEESDELLKAAEKHGIDP--------------IFL 153 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHH-----cCCCEEEeCCCChHHHHHHHHHHHHcCCcE--------------EEE
Confidence 355666543 1 123455566655432 2455677887544 4466888899998864 333
Q ss_pred Ec---ChhHHHHHHhhCCEEEEcCccCCCCCCCCH-----HHH-----HhhCCcEEECCCCCChHHHHHHHHhcCCceEE
Q 043830 124 VD---TLGELRQLYKLTPIAVIGGSFLPGLAGHNI-----SEA-----AAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVL 190 (248)
Q Consensus 124 ~~---~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~-----lEA-----~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~ 190 (248)
+- +...|..+.+.++-++..-|...-.|-.+. -+. -.+++||++|=.. ..++.+..+.+.. -++
T Consensus 154 vaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGI-s~~e~~~~v~~~A--DGV 230 (265)
T COG0159 154 VAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGI-SSPEQAAQVAEAA--DGV 230 (265)
T ss_pred eCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCc-CCHHHHHHHHHhC--CeE
Confidence 32 124677777777542222233211111111 111 2269999997555 3334444444443 345
Q ss_pred EcCCHHHHHHHHHHhhh
Q 043830 191 QVSGKSELEEALSQLFS 207 (248)
Q Consensus 191 ~~~~~~~l~~~i~~ll~ 207 (248)
.+++ ++.+.|.+-.+
T Consensus 231 IVGS--AiV~~i~~~~~ 245 (265)
T COG0159 231 IVGS--AIVKIIEEGLD 245 (265)
T ss_pred EEcH--HHHHHHHhccc
Confidence 5665 66666655443
No 333
>PRK15115 response regulator GlrR; Provisional
Probab=35.36 E-value=3.3e+02 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=25.8
Q ss_pred hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 161 AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 161 ~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
...|||+-....+.....+.+...-.+++..+-+.+.|...+..++.
T Consensus 76 ~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 76 PGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred CCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 45687763222233333433322112345556788888888887765
No 334
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=35.35 E-value=2.6e+02 Score=23.19 Aligned_cols=132 Identities=13% Similarity=0.071 Sum_probs=69.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEE--------eCCCcchHH-HHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMA--------SSIHRGEEK-VMLAVHK 71 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~--------~~~~~~~~~-~ll~a~~ 71 (248)
|.+..+.|...|+. ..++|-.. -.+|+...++.+.|+++.++-. .+.|...-. .+.+..+
T Consensus 86 s~~~v~~ll~~G~~---rViiGt~a--------v~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~ 154 (241)
T COG0106 86 SLEDVEALLDAGVA---RVIIGTAA--------VKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAK 154 (241)
T ss_pred CHHHHHHHHHCCCC---EEEEecce--------ecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHH
Confidence 34556677777775 33445211 1234456677778885544322 112321111 3444444
Q ss_pred HHHHhCCCeEEEEe-----c--CCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---ChhHHHHHHhh--CCE
Q 043830 72 VLMQKNPNLVTIIV-----P--RHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---TLGELRQLYKL--TPI 139 (248)
Q Consensus 72 ~l~~~~~~~~lviv-----G--~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~y~~--ad~ 139 (248)
++... +-..+++- | .|++. +.+.++++...++ |...| ..+|+..+... ..=
T Consensus 155 ~~~~~-g~~~ii~TdI~~DGtl~G~n~-~l~~~l~~~~~ip---------------viaSGGv~s~~Di~~l~~~~G~~G 217 (241)
T COG0106 155 RLEEV-GLAHILYTDISRDGTLSGPNV-DLVKELAEAVDIP---------------VIASGGVSSLDDIKALKELSGVEG 217 (241)
T ss_pred HHHhc-CCCeEEEEecccccccCCCCH-HHHHHHHHHhCcC---------------EEEecCcCCHHHHHHHHhcCCCcE
Confidence 44332 21223331 2 25654 5666776665443 23322 34677777775 444
Q ss_pred EEEcCccCCCCCCCCHHHHHhhC
Q 043830 140 AVIGGSFLPGLAGHNISEAAAAG 162 (248)
Q Consensus 140 ~~v~~s~~e~~gg~~~lEA~a~G 162 (248)
++++.++++ |..++.||..|-
T Consensus 218 vIvG~ALy~--g~~~l~ea~~~~ 238 (241)
T COG0106 218 VIVGRALYE--GKFTLEEALACV 238 (241)
T ss_pred EEEehHHhc--CCCCHHHHHHHH
Confidence 578888988 368889988763
No 335
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=35.31 E-value=28 Score=21.83 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=12.6
Q ss_pred CHHHHHhhCCcEEE
Q 043830 154 NISEAAAAGCAVLT 167 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~ 167 (248)
.+.|++..|+||++
T Consensus 16 kI~esav~G~pVvA 29 (58)
T PF11238_consen 16 KIAESAVMGTPVVA 29 (58)
T ss_pred HHHHHHhcCceeEe
Confidence 37999999999997
No 336
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.21 E-value=2.3e+02 Score=26.52 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=37.1
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++..++++......+....+.++=+..+.. ......+..||++++.++
T Consensus 207 viv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~ 278 (563)
T PRK08527 207 LFYLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGA 278 (563)
T ss_pred EEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCC
Confidence 677887643 2478889999999986533322111111221222211 245678899999887554
No 337
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=35.20 E-value=93 Score=24.83 Aligned_cols=38 Identities=21% Similarity=0.078 Sum_probs=22.8
Q ss_pred HHHHHhhCCcEEECCCCC-------------ChHHHHHHHHhcCCceEEEc
Q 043830 155 ISEAAAAGCAVLTGPHIG-------------HYSNMVSAMQRLNPKSVLQV 192 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~-------------~~~~~~~~~~~~g~g~~~~~ 192 (248)
.+|++..|+|||+.+... --++.+.++.+.+.|+++.+
T Consensus 4 ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva 54 (194)
T PF00926_consen 4 AIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVA 54 (194)
T ss_dssp HHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEE
T ss_pred HHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEec
Confidence 589999999999965421 12345556666565555444
No 338
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=35.07 E-value=1.6e+02 Score=27.69 Aligned_cols=65 Identities=8% Similarity=-0.004 Sum_probs=38.3
Q ss_pred EEEecCCC---CCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHP---QHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~---~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+- .-.+++.+++.++|++......+....+.++=++.|.. .....++..||++++.++.
T Consensus 207 vil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~ 279 (586)
T PRK06276 207 VILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCR 279 (586)
T ss_pred EEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCC
Confidence 67888754 22478889999999986544333211122222223321 2455788999998775543
No 339
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=34.81 E-value=1.4e+02 Score=25.36 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=8.3
Q ss_pred EEEEcChhHH-HHHHhhCC
Q 043830 121 VYVVDTLGEL-RQLYKLTP 138 (248)
Q Consensus 121 v~~~~~~~~l-~~~y~~ad 138 (248)
.|+++..+|| +.|+..++
T Consensus 238 t~~Ie~~~el~~~~l~~~~ 256 (281)
T PF02401_consen 238 TYHIETADELDPEWLKGVK 256 (281)
T ss_dssp EEEESSGGG--HHHHTT-S
T ss_pred EEEeCCccccCHhHhCCCC
Confidence 3555555555 35555554
No 340
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=34.78 E-value=3.8e+02 Score=24.89 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=37.7
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|++......+....+.++=++.+.. .....+++.||++++.++
T Consensus 200 vIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~ 271 (548)
T PRK08978 200 VLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGA 271 (548)
T ss_pred EEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcC
Confidence 678887532 2478999999999986543333211111111222211 245677889999887554
No 341
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=34.67 E-value=3e+02 Score=25.53 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=39.1
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc----C--hhHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD----T--LGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~----~--~~~l~~~y~~ad~~~v~~s 145 (248)
++++|.|-. -.+++.+++.++|++......+....+.++=++.| . ......+++.||++++.++
T Consensus 205 vi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~ 277 (535)
T TIGR03394 205 VMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGV 277 (535)
T ss_pred EEEEChhhcccCcHHHHHHHHHHhCCCEEEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECC
Confidence 677887643 34789999999999866544432111122212222 1 2356778999999887554
No 342
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=33.93 E-value=1.5e+02 Score=23.76 Aligned_cols=130 Identities=13% Similarity=0.194 Sum_probs=64.2
Q ss_pred HHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeE--EEEeCCCcchHHHHHHHHHHHHHhCCCeE
Q 043830 4 QAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQV--WMASSIHRGEEKVMLAVHKVLMQKNPNLV 81 (248)
Q Consensus 4 ~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v--~l~~~~~~~~~~~ll~a~~~l~~~~~~~~ 81 (248)
+.+.+...|++-=++.|.- +.|-+... ..+...+++|+. .+.++ =+... .+ ...++.+.. ..++..
T Consensus 17 ~i~~l~~~g~d~lHiDiMD-g~fvpn~~---~g~~~i~~i~~~-~~~~~DvHLMv~-~P---~~~i~~~~~---~g~~~i 84 (201)
T PF00834_consen 17 EIKRLEEAGADWLHIDIMD-GHFVPNLT---FGPDIIKAIRKI-TDLPLDVHLMVE-NP---ERYIEEFAE---AGADYI 84 (201)
T ss_dssp HHHHHHHTT-SEEEEEEEB-SSSSSSB----B-HHHHHHHHTT-SSSEEEEEEESS-SG---GGHHHHHHH---HT-SEE
T ss_pred HHHHHHHcCCCEEEEeecc-cccCCccc---CCHHHHHHHhhc-CCCcEEEEeeec-cH---HHHHHHHHh---cCCCEE
Confidence 4456666787654555542 12222211 122345666654 33343 23222 22 234555543 345543
Q ss_pred EEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHH
Q 043830 82 TIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 82 lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
.+-+- ..+...++.+.+++.|....+-.. +.+ +.+.+..++...|.+.+. |..+||+|+...+.
T Consensus 85 ~~H~E-~~~~~~~~i~~ik~~g~k~Gialn-----P~T------~~~~~~~~l~~vD~VlvM-sV~PG~~Gq~f~~~ 148 (201)
T PF00834_consen 85 TFHAE-ATEDPKETIKYIKEAGIKAGIALN-----PET------PVEELEPYLDQVDMVLVM-SVEPGFGGQKFIPE 148 (201)
T ss_dssp EEEGG-GTTTHHHHHHHHHHTTSEEEEEE------TTS-------GGGGTTTGCCSSEEEEE-SS-TTTSSB--HGG
T ss_pred EEccc-chhCHHHHHHHHHHhCCCEEEEEE-----CCC------CchHHHHHhhhcCEEEEE-EecCCCCcccccHH
Confidence 32232 233446777888988886433211 111 245778889999997775 44588989886554
No 343
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=33.56 E-value=3.6e+02 Score=25.37 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=37.5
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|++......+....+.++=++.|.. ....++++.||++++.++
T Consensus 204 vil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~ 275 (588)
T PRK07525 204 VILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGT 275 (588)
T ss_pred EEEECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECC
Confidence 678887642 3477899999999986543332211112222333321 134567899999887554
No 344
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.28 E-value=3.5e+02 Score=25.31 Aligned_cols=64 Identities=17% Similarity=0.006 Sum_probs=38.0
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|++......+....+.++=++.|.. .....++..||++++.++
T Consensus 210 vil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~ 281 (572)
T PRK08979 210 VLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGV 281 (572)
T ss_pred EEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcC
Confidence 677887653 2467999999999986544333211112222222311 245668899999877554
No 345
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=33.08 E-value=2.7e+02 Score=26.32 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=38.2
Q ss_pred EEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+-. -.+++.+++.+++++......+....+.++=++.|.. ....++++.||++++.++.
T Consensus 212 vi~~G~g~~~a~~~l~~lae~~~~PV~tt~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~ 282 (597)
T PRK08273 212 AILVGAGALGATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSS 282 (597)
T ss_pred EEEECcchHhHHHHHHHHHHHhCCceeecccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCC
Confidence 677887653 2367889999999986544333211111211233221 2445688999998876553
No 346
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=33.01 E-value=1.8e+02 Score=20.58 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=26.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHhCC-CeEEEEecCCCCCHHHHHHHHHhcCC
Q 043830 52 VWMASSIHRGEEKVMLAVHKVLMQKNP-NLVTIIVPRHPQHGKEIAQKLQKEGE 104 (248)
Q Consensus 52 v~l~~~~~~~~~~~ll~a~~~l~~~~~-~~~lvivG~~~~~~~~l~~~~~~~~l 104 (248)
++.+.++.......+.+.+..+++..| ++.+++-|.++.... +.+++.|.
T Consensus 53 vV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~---~~~~~~G~ 103 (119)
T cd02067 53 AIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDF---KFLKEIGV 103 (119)
T ss_pred EEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhH---HHHHHcCC
Confidence 443333323334455555566666667 777666666544312 34566665
No 347
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=33.00 E-value=2.4e+02 Score=26.23 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=36.5
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---C--hhHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---T--LGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~--~~~l~~~y~~ad~~~v~~s 145 (248)
++|+|.+-. ..+++.+++.++|++......+....+..+=.+.| . ......++..||++++.++
T Consensus 208 vi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~ 279 (557)
T PRK08199 208 LVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGT 279 (557)
T ss_pred EEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCC
Confidence 677887643 23778899999999865433221111112212222 1 1245667889999887554
No 348
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.64 E-value=1.9e+02 Score=23.21 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=38.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhh-CCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKL-TPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~-ad~~~v~~s~~e~~gg~~~ 155 (248)
..+|++-|. . ..++.+.+++.++. ++.| +..|+...++. +|++=++|.-. +||...
T Consensus 80 GA~FivsP~-~--~~~v~~~~~~~~i~----------------~iPG~~TptEi~~A~~~Ga~~vKlFPA~~--~GG~~y 138 (204)
T TIGR01182 80 GAQFIVSPG-L--TPELAKHAQDHGIP----------------IIPGVATPSEIMLALELGITALKLFPAEV--SGGVKM 138 (204)
T ss_pred CCCEEECCC-C--CHHHHHHHHHcCCc----------------EECCCCCHHHHHHHHHCCCCEEEECCchh--cCCHHH
Confidence 456766554 2 26777778887765 2333 33566555544 78776676432 345665
Q ss_pred HHHHh---hCCcEEE
Q 043830 156 SEAAA---AGCAVLT 167 (248)
Q Consensus 156 lEA~a---~G~Pvi~ 167 (248)
+-++. -+.|++.
T Consensus 139 ikal~~plp~i~~~p 153 (204)
T TIGR01182 139 LKALAGPFPQVRFCP 153 (204)
T ss_pred HHHHhccCCCCcEEe
Confidence 55544 4566664
No 349
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=32.45 E-value=1.8e+02 Score=20.40 Aligned_cols=71 Identities=6% Similarity=0.109 Sum_probs=42.5
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC-HHH
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN-ISE 157 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~-~lE 157 (248)
++++|.|-. -.+.+++.+++.|++..+. .-+..+++.....+|+++++|-.. + -.. +-|
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~--------------a~~~~e~~~~~~~~Dvill~PQv~--~-~~~~i~~ 66 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAA--------------AGAYGSHYDMIPDYDLVILAPQMA--S-YYDELKK 66 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEE--------------EeeHHHHHHhccCCCEEEEcChHH--H-HHHHHHH
Confidence 455666633 1267888888888863221 123457888899999987765432 1 111 222
Q ss_pred -HHhhCCcEEECC
Q 043830 158 -AAAAGCAVLTGP 169 (248)
Q Consensus 158 -A~a~G~Pvi~~~ 169 (248)
+...|+||..-+
T Consensus 67 ~~~~~~ipv~~I~ 79 (99)
T cd05565 67 DTDRLGIKLVTTT 79 (99)
T ss_pred HhhhcCCCEEEeC
Confidence 345689999743
No 350
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=32.31 E-value=3.5e+02 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=15.7
Q ss_pred cCCHHHHHHHH----HHhhhCHHHHHH
Q 043830 192 VSGKSELEEAL----SQLFSDARVLEA 214 (248)
Q Consensus 192 ~~~~~~l~~~i----~~ll~~~~~~~~ 214 (248)
..|.|+..-.+ +++++||+.++.
T Consensus 135 s~~iEsTYyll~~YlKk~l~Dp~~~~~ 161 (344)
T PF04123_consen 135 SRGIESTYYLLGRYLKKALSDPEYRRT 161 (344)
T ss_pred CCCcHHHHHHHHHHHHHhhcChhhhce
Confidence 36777766666 777888776644
No 351
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=32.17 E-value=2.1e+02 Score=26.74 Aligned_cols=63 Identities=11% Similarity=-0.055 Sum_probs=36.9
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+.. -.+++.+++++++.+......+....+.++=++.|.. ....++.||++++.++.
T Consensus 224 vi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~--~~~~~~~aDlvl~lG~~ 289 (569)
T PRK08327 224 VIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPD--PRADLAEADLVLVVDSD 289 (569)
T ss_pred EEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCCccccccc--cchhhhhCCEEEEeCCC
Confidence 577887653 2478999999999986543332211111111223321 34567899998886553
No 352
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=32.03 E-value=3.8e+02 Score=24.05 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=35.6
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.|++++.... +++.|..+++.+. -..|||+-............+ ..|. +++..+-+.+.|...+..++..
T Consensus 43 ~DlVllD~~~-p~~~g~~ll~~l~~~~~~~~vIvlt~~~~~~~~~~a~-~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 43 PDLLITDVRM-PGEDGLDLLPQIKKRHPQLPVIVMTAHSDLDTAVAAY-QRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCEEEEcCCC-CCCCHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH-HcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 4665553222 2223444444443 356777632222333333333 3332 3444557889999999887753
No 353
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.89 E-value=3.9e+02 Score=24.99 Aligned_cols=64 Identities=13% Similarity=0.022 Sum_probs=38.2
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.+++++......+....+.++=++.|.. .....++..||++++.++
T Consensus 210 vi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~ 281 (574)
T PRK07979 210 VVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGV 281 (574)
T ss_pred EEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCC
Confidence 678887653 2478999999999986543332211112222222311 245678899999877554
No 354
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.82 E-value=2.7e+02 Score=26.24 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=37.8
Q ss_pred EEEecCCCC-----CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ-----HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|++......+....+.++=++.+.. .....+++.||++++.++
T Consensus 216 vil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~ 289 (595)
T PRK09107 216 VIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGA 289 (595)
T ss_pred EEEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECC
Confidence 678887632 2378899999999986543333211112222233321 245678889999877554
No 355
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=31.73 E-value=1.2e+02 Score=21.88 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCC---HHHHHHHHHhcCCc
Q 043830 67 LAVHKVLMQKNPNLVTIIVPRHPQH---GKEIAQKLQKEGEV 105 (248)
Q Consensus 67 l~a~~~l~~~~~~~~lvivG~~~~~---~~~l~~~~~~~~l~ 105 (248)
.+.+..+....|+..++|+|.|... .+++.+.+++.|+.
T Consensus 42 ~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~ 83 (114)
T cd05125 42 EESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIA 83 (114)
T ss_pred HHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCE
Confidence 4455555544566678889987542 26777888888775
No 356
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=31.65 E-value=1.8e+02 Score=20.17 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=28.0
Q ss_pred EEEecCCCCC----HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE
Q 043830 82 TIIVPRHPQH----GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 82 lvivG~~~~~----~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
++.+|.|-.. ...+++.++++|++...- ..- .++.......+|+++.
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~-----------~~~---v~~~~~~~~~aDiiv~ 55 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVE-----------QCA---VDEIKALTDGADIIVT 55 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceee-----------eEE---ecccccCCCcccEEEE
Confidence 4556766432 256888889998862211 111 2366777888899543
No 357
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.60 E-value=2.9e+02 Score=25.86 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=37.6
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++|+|.+.. -.+++.++++++|++......+....+.++=++.|.. .....+++.||++++.++
T Consensus 210 vi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~ 281 (574)
T PRK06882 210 VLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGV 281 (574)
T ss_pred EEEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECC
Confidence 678887643 2367889999999986544433211111221222211 244568899999887554
No 358
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=31.49 E-value=3.6e+02 Score=24.90 Aligned_cols=62 Identities=6% Similarity=0.026 Sum_probs=37.0
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecc---cCCCCCCccEEEEcC----hhHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSR---HEKLMPRTNVYVVDT----LGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~---~~~~~~~~~v~~~~~----~~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|.+...... +..+ . .+=++.|. ......+++.||++++.++
T Consensus 210 vIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~-~-~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~ 281 (530)
T PRK07092 210 ALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFP-E-DHPLFAGFLPASREKISALLDGHDLVLVIGA 281 (530)
T ss_pred EEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCC-C-CCccccCcCCccHHHHHHHHhhCCEEEEECC
Confidence 677887643 236788999999998653322 2222 1 12223332 1345578889999887654
No 359
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=31.43 E-value=2.4e+02 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=12.4
Q ss_pred eEEEcCCHHHHHHHHHHhhh
Q 043830 188 SVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll~ 207 (248)
++..+.+.+++.+.+..++.
T Consensus 98 ~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 98 YLPKPFELEELDARLRALLR 117 (221)
T ss_pred eEeCCCCHHHHHHHHHHHHh
Confidence 44445677777777765543
No 360
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=31.37 E-value=3.8e+02 Score=23.93 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhCH
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
.|++++.... ++..|..+++.+. ..+|||+-....+.......+ +.|. +++..+-+.+.|...+...+...
T Consensus 49 ~dlillD~~~-p~~~g~~ll~~i~~~~~~~pvI~lt~~~~~~~~~~a~-~~Ga~d~l~KP~~~~~L~~~i~~~l~~~ 123 (457)
T PRK11361 49 PDVVLMDIRM-PEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEAL-RCGAFDYVIKPFDLDELNLIVQRALQLQ 123 (457)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH-HCCccEEEecccCHHHHHHHHhhhcccc
Confidence 4665553222 2222444444332 357877632222333333333 3332 34455678888888888776543
No 361
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=31.26 E-value=2.7e+02 Score=26.00 Aligned_cols=64 Identities=6% Similarity=0.075 Sum_probs=37.3
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|++......+...-+.++=++.|.. .....++..||++++.++
T Consensus 215 vIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~ 286 (564)
T PRK08155 215 VLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGA 286 (564)
T ss_pred EEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECC
Confidence 778887643 2478889999999986543332211111221222221 135568899999887554
No 362
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=31.22 E-value=2.3e+02 Score=26.39 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=37.2
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+-. -.+++.+++.++|++......+....+.++=++.+. -....++.||++++.++.
T Consensus 210 vi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~g~--~~~~~~~~aDlvl~lG~~ 275 (554)
T TIGR03254 210 LILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAA--ARSFALAEADVVMLVGAR 275 (554)
T ss_pred EEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCchhhhH--HHHHHHhcCCEEEEECCC
Confidence 678887643 347899999999998654443321111122122221 223568999998875554
No 363
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=31.17 E-value=2.2e+02 Score=26.69 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=36.7
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.+-. -.+++.+++.+++++......+.-..+.++=++.|. --...++.||++++.++.
T Consensus 217 vIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~--~~~~~l~~aDlvl~lG~~ 282 (569)
T PRK09259 217 LIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAA--ARSLALANADVVLLVGAR 282 (569)
T ss_pred EEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhH--HHHHHHhcCCEEEEeCCC
Confidence 678887643 347899999999998654443321111111122221 112458899998886553
No 364
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=30.99 E-value=2.5e+02 Score=21.67 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=13.1
Q ss_pred eEEEcCCHHHHHHHHHHhhh
Q 043830 188 SVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll~ 207 (248)
++..+-+.++|...+...+.
T Consensus 101 ~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 101 YVAKPFSPREVAARVRTILR 120 (228)
T ss_pred EEECCCCHHHHHHHHHHHHC
Confidence 44455677788777776554
No 365
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=30.84 E-value=1.7e+02 Score=25.05 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=30.1
Q ss_pred CCHHHHHhhCCcEEE---CCC---------CCChH-------HHHHH-HHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 153 HNISEAAAAGCAVLT---GPH---------IGHYS-------NMVSA-MQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~---~~~---------~~~~~-------~~~~~-~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.-+++++..+||||+ |.. ++... +.++. +.+.| ++.++|.++|.+.|.+.++
T Consensus 224 ~~f~~aa~~~KPVV~lk~Grs~~~g~~~sHTGala~~~~G~~~~~~a~~rq~G---vi~v~~~~el~~~~~~~~~ 295 (300)
T PLN00125 224 AAFIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAG---VTVVESPAKIGVAMLEVFK 295 (300)
T ss_pred HHHHHHhcCCCCEEEEEecCCCCCCCCccchhhhhcCCCCCHHHHHHHHHHCC---CeEeCCHHHHHHHHHHHHH
Confidence 346888878999997 221 11111 22222 33333 4556888888888776663
No 366
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=30.75 E-value=2.1e+02 Score=20.70 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCC--HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHH
Q 043830 79 NLVTIIVPRHPQH--GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQL 133 (248)
Q Consensus 79 ~~~lvivG~~~~~--~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~ 133 (248)
.+++.|||+-..+ ...+++.+.+.+- ..+++|..+.++...|
T Consensus 69 ~iklAivGD~s~~~~S~~l~dfi~EsN~-------------G~~~~F~~~~~eA~~~ 112 (113)
T PF13788_consen 69 RIKLAIVGDFSAYATSKSLRDFIYESNR-------------GNHFFFVPDEEEAIAW 112 (113)
T ss_pred ceeEEEEEcccccccchhHHHHHHHhcC-------------CCeEEEECCHHHHHhh
Confidence 5899999974333 4678888877532 3467888766665444
No 367
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=30.55 E-value=1.1e+02 Score=25.68 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=28.7
Q ss_pred HhhCCcEEE--CCCCCChHH---HHHHHHhcCC-ce-----EEEcCCHHHHHHHHHHhhhC
Q 043830 159 AAAGCAVLT--GPHIGHYSN---MVSAMQRLNP-KS-----VLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 159 ~a~G~Pvi~--~~~~~~~~~---~~~~~~~~g~-g~-----~~~~~~~~~l~~~i~~ll~~ 208 (248)
-+||+|||+ |+.++.-.+ .+....+.|+ |. ++.-.+++.+.++|..+..+
T Consensus 199 ~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe 259 (265)
T COG1830 199 AACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHE 259 (265)
T ss_pred HhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcC
Confidence 467799998 444322222 3333334432 22 24447888898888877654
No 368
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=30.46 E-value=1.1e+02 Score=21.97 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCC
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQ 90 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~ 90 (248)
...+..+.+++..|+..+++-|.++.
T Consensus 54 ~~~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 54 EALELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred HHHHHHHHHHHHCCCCEEEECCcchh
Confidence 55666666777889887666555544
No 369
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=30.33 E-value=2.7e+02 Score=21.93 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=34.7
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++.... ++..|..+++.+. ...|+|+.............+ +.|. +++..+-+.++|...+..++.
T Consensus 46 ~dlvild~~l-~~~~g~~~~~~ir~~~~~pii~l~~~~~~~~~~~~~-~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 46 PDLVLLDIML-PGKDGMTICRDLRPKWQGPIVLLTSLDSDMNHILAL-EMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCCCEEEEECCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 5776653322 2223444444443 356777632222222233333 3332 355566788889888887665
No 370
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=30.30 E-value=2.7e+02 Score=25.88 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=37.2
Q ss_pred EEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s 145 (248)
++|+|.+-. ..+++.+++.++|.+......+....+.++=++.|.. ....++++.||++++.++
T Consensus 199 vii~G~g~~~a~~~l~~lAe~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~ 268 (549)
T PRK06457 199 VLLIGGGTRGLGKEINRFAEKIGAPIIYTLNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGT 268 (549)
T ss_pred EEEECcchhhHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECC
Confidence 678887642 2378889999999986543333211111121222211 133567889999887554
No 371
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=30.17 E-value=4.1e+02 Score=23.91 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=22.4
Q ss_pred hhHHHHHHhhCCEEEEcCccCCCCCCCC-HHHHHhhCCcEEE
Q 043830 127 LGELRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAAAGCAVLT 167 (248)
Q Consensus 127 ~~~l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a~G~Pvi~ 167 (248)
++++...+..+|++|...+ .+ +. +...+.-+.|.++
T Consensus 233 ~~~l~~~l~~aDiVI~aT~-a~----~~vi~~~~~~~~~~~~ 269 (414)
T PRK13940 233 LSELPQLIKKADIIIAAVN-VL----EYIVTCKYVGDKPRVF 269 (414)
T ss_pred HHHHHHHhccCCEEEECcC-CC----CeeECHHHhCCCCeEE
Confidence 3577888999999765332 22 22 2344456788876
No 372
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=29.82 E-value=2.1e+02 Score=21.19 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=28.8
Q ss_pred EEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 043830 190 LQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNL 237 (248)
Q Consensus 190 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (248)
....|.+++++.+.+.+...+....+.+.+.++. ...+.+++|.+
T Consensus 84 e~~edid~~~~~l~~~~~~~~~~~~~~r~~~~~l---e~~~~~~~~~~ 128 (131)
T PRK06228 84 IGGTDLGELREAVEQEFLTLDERERSVRSALAKL---ESGFIRRFMEL 128 (131)
T ss_pred EchhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHh
Confidence 3446888888888888776666555555544443 34677777654
No 373
>PF13941 MutL: MutL protein
Probab=29.82 E-value=1.9e+02 Score=26.53 Aligned_cols=53 Identities=21% Similarity=0.372 Sum_probs=33.9
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCc
Q 043830 52 VWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEV 105 (248)
Q Consensus 52 v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~ 105 (248)
++++||+..++.+.+++-...|.+..-++-+|++|....+ +++++.+.+.+.+
T Consensus 128 ILLaGGtDgG~~~~il~nA~~La~~~~~~pVIyAGN~~a~-~~v~~il~~~~~~ 180 (457)
T PF13941_consen 128 ILLAGGTDGGNKEVILHNAEMLAEANLRIPVIYAGNKAAQ-DEVEEILEKAGKE 180 (457)
T ss_pred EEEeCCccCCchHHHHHHHHHHHhCCCCCcEEEECCHHHH-HHHHHHHHhCCCC
Confidence 5566666666667778777777655445556777764333 6777776655544
No 374
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=29.67 E-value=3.3e+02 Score=23.27 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=7.1
Q ss_pred HHHHHHHHhcCC
Q 043830 93 KEIAQKLQKEGE 104 (248)
Q Consensus 93 ~~l~~~~~~~~l 104 (248)
..|.+.+++.|.
T Consensus 228 ~rL~eiA~~~g~ 239 (294)
T COG0761 228 NRLAEIAKRHGK 239 (294)
T ss_pred HHHHHHHHHhCC
Confidence 556666666554
No 375
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=29.46 E-value=2.9e+02 Score=21.90 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=43.2
Q ss_pred CCeEEEEecCCC----CCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEEEcCccC----
Q 043830 78 PNLVTIIVPRHP----QHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAVIGGSFL---- 147 (248)
Q Consensus 78 ~~~~lvivG~~~----~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~v~~s~~---- 147 (248)
++.++++++... +..+...+..+++|...... ...+ ...++.+.+..||++++++...
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~------------~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~ 95 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHL------------LLIDTANDPDVVARLLEADGIFVGGGNQLRLL 95 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEE------------eccCCCCCHHHHHHHhhCCEEEEcCCcHHHHH
Confidence 355677776432 23355666677777764321 1111 2247788899999988843211
Q ss_pred C---CCCCC-CHHHHHhhCCcEEE
Q 043830 148 P---GLAGH-NISEAAAAGCAVLT 167 (248)
Q Consensus 148 e---~~gg~-~~lEA~a~G~Pvi~ 167 (248)
. +.++. .+.+...-|+|++.
T Consensus 96 ~~l~~t~~~~~i~~~~~~G~v~~G 119 (210)
T cd03129 96 SVLRETPLLDAILKRVARGVVIGG 119 (210)
T ss_pred HHHHhCChHHHHHHHHHcCCeEEE
Confidence 0 00011 25666777887774
No 376
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.30 E-value=3.6e+02 Score=25.21 Aligned_cols=64 Identities=9% Similarity=-0.078 Sum_probs=37.7
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc---C--hhHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD---T--LGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~---~--~~~l~~~y~~ad~~~v~~s 145 (248)
++|+|.+-. -.+++.+++.++|++......+....+.++=++.| . ......++..||++++.++
T Consensus 210 vil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~ 281 (574)
T PRK06466 210 VIYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGA 281 (574)
T ss_pred EEEECCCccccChHHHHHHHHHHhCCCEEEcCccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECC
Confidence 678887643 23789999999999865433332111112212222 1 1355678899999877554
No 377
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=29.28 E-value=3.4e+02 Score=25.60 Aligned_cols=64 Identities=8% Similarity=-0.079 Sum_probs=38.1
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh------hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL------GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~------~~l~~~y~~ad~~~v~~s 145 (248)
++|+|.+-. -.+++.+++.++|++......+....+.++=++.|.. .....+++.||++++.++
T Consensus 206 vIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~ 278 (588)
T TIGR01504 206 LIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGN 278 (588)
T ss_pred EEEECCCcchhhhHHHHHHHHHHhCCCeEEcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECC
Confidence 678888743 2478999999999986544433211122222222311 234567889999877554
No 378
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=29.26 E-value=3.5e+02 Score=22.88 Aligned_cols=54 Identities=19% Similarity=0.082 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 93 KEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 93 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+..++.+++.+++. . +.++.++++. -|++++.+.-. +-.-.++.|+..|++|++
T Consensus 41 ~~a~~~a~~~~~~~----------------~---~~~~~~ll~~~~iD~V~Iatp~~--~H~e~~~~AL~aGkhVl~ 96 (342)
T COG0673 41 ERAEAFAEEFGIAK----------------A---YTDLEELLADPDIDAVYIATPNA--LHAELALAALEAGKHVLC 96 (342)
T ss_pred HHHHHHHHHcCCCc----------------c---cCCHHHHhcCCCCCEEEEcCCCh--hhHHHHHHHHhcCCEEEE
Confidence 55777778877641 0 1256667776 47877643211 112246999999999998
No 379
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=29.26 E-value=1.4e+02 Score=26.22 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhcCCceEEecccCCCCCCccEEEE-cChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHhhCCcEE
Q 043830 91 HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVV-DTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAAAGCAVL 166 (248)
Q Consensus 91 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi 166 (248)
..+++.+++...|.+..-...-....++...|+. |...++..+.. .+|++++...+.+. +-.+ +|.. +|++|+
T Consensus 18 ~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~-q~~n-l~~~-~~~~v~ 93 (351)
T TIGR03156 18 SLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSPS-QERN-LEKA-LGCRVI 93 (351)
T ss_pred hHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCHH-HHHH-HHHH-hCCccc
Confidence 3578888888888875443322222223344443 34556666543 57776665444432 2223 4443 688888
No 380
>PRK13435 response regulator; Provisional
Probab=28.80 E-value=2.2e+02 Score=20.41 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=14.1
Q ss_pred eEEEcCCHHHHHHHHHHhh
Q 043830 188 SVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll 206 (248)
++..+-+.+.|.+.|..++
T Consensus 101 ~l~kp~~~~~l~~~i~~~~ 119 (145)
T PRK13435 101 VIAKPYSPRGVARALSYLS 119 (145)
T ss_pred eEeCCCCHHHHHHHHHHHH
Confidence 5556678888888887665
No 381
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.78 E-value=3.3e+02 Score=23.22 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=34.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc-ChhHHHHHHhhCCEEEEc
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-TLGELRQLYKLTPIAVIG 143 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~y~~ad~~~v~ 143 (248)
+-+.+|+|++.--...+..++.+.|-. |.+.. ...++..+.+.||++++.
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~at---------------Vt~~hs~t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGAT---------------VTICHSKTRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCE---------------EEEecCCCCCHHHHhhhCCEEEEc
Confidence 457899999877557788777665543 22222 124789999999997764
No 382
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=28.78 E-value=4.3e+02 Score=23.68 Aligned_cols=92 Identities=17% Similarity=0.040 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecc--cCCC------------CCCccEEEEcChhHHH
Q 043830 66 MLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR--HEKL------------MPRTNVYVVDTLGELR 131 (248)
Q Consensus 66 ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~------------~~~~~v~~~~~~~~l~ 131 (248)
+++++..........++.|+|+ +...-.+.+.+.++|.....-.. .... .....+++.+...++.
T Consensus 286 ~~~~~~~~~~~l~gk~v~i~~~-~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~ 364 (428)
T cd01965 286 LLDAMLDSHFYLGGKRVAIAGD-PDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLE 364 (428)
T ss_pred HHHHHHHHHHHhcCCEEEEEcC-hHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHH
Confidence 4444444333334567777775 34445677777788876432111 1000 0112345555667888
Q ss_pred HHHhh--CCEEEEcCccCCCCCCCCHHHHHhhCCcEE
Q 043830 132 QLYKL--TPIAVIGGSFLPGLAGHNISEAAAAGCAVL 166 (248)
Q Consensus 132 ~~y~~--ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi 166 (248)
++++. .|++ +++|... -=|.-.|+|.+
T Consensus 365 ~~i~~~~pdli-ig~~~~~-------~~a~~~~ip~i 393 (428)
T cd01965 365 SLAKEEPVDLL-IGNSHGR-------YLARDLGIPLV 393 (428)
T ss_pred HHhhccCCCEE-EECchhH-------HHHHhcCCCEE
Confidence 77777 8884 4544321 12334688887
No 383
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=28.75 E-value=69 Score=22.76 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=22.0
Q ss_pred HHHHHhCCCeEEEEecCCCCC---HHHHHHHHHhcCCc
Q 043830 71 KVLMQKNPNLVTIIVPRHPQH---GKEIAQKLQKEGEV 105 (248)
Q Consensus 71 ~~l~~~~~~~~lvivG~~~~~---~~~l~~~~~~~~l~ 105 (248)
..+....|+..++|+|.|... .+++++.+++.|+.
T Consensus 45 ~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ 82 (110)
T PF04430_consen 45 EELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIG 82 (110)
T ss_dssp HHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-E
T ss_pred HHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCe
Confidence 334445566678888876442 27888888888875
No 384
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.51 E-value=2.5e+02 Score=25.05 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=12.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCC
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGE 104 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l 104 (248)
|+.+||-|.+..-...|.+.+++.|.
T Consensus 290 D~miVVGG~nSSNT~rL~eia~~~g~ 315 (387)
T PRK13371 290 DLMVVIGGYNSSNTTHLQEIAIERGI 315 (387)
T ss_pred CEEEEECCCCCccHHHHHHHHHhcCC
Confidence 44333333333333566666666543
No 385
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=28.43 E-value=1.9e+02 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=13.6
Q ss_pred EEEcCCHHHHHHHHHHhhh
Q 043830 189 VLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 189 ~~~~~~~~~l~~~i~~ll~ 207 (248)
+..++|+++|.+.+.+.|+
T Consensus 296 v~v~~~~~el~~~~~~~~~ 314 (317)
T PTZ00187 296 VRVVKSPAQLGKTMLEVMK 314 (317)
T ss_pred CeEeCCHHHHHHHHHHHHH
Confidence 4556888888888777663
No 386
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=28.37 E-value=3.3e+02 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=19.3
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
-|+++-.+.+. .+...+-|..+|+|+++
T Consensus 92 Pd~vig~Ggyv---s~P~~~Aa~~~~iPv~i 119 (357)
T COG0707 92 PDVVIGTGGYV---SGPVGIAAKLLGIPVII 119 (357)
T ss_pred CCEEEecCCcc---ccHHHHHHHhCCCCEEE
Confidence 56754434332 14567999999999998
No 387
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.32 E-value=3.5e+02 Score=23.08 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=33.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEEc
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v~ 143 (248)
+-+.+|+|++.--...+..++...|-. |.+... ..++.++...||++|+.
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gat---------------Vtv~~s~t~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNAS---------------VTILHSRSKDMASYLKDADVIVSA 208 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCe---------------EEEEeCCchhHHHHHhhCCEEEEC
Confidence 457899999765556677776665533 233322 24789999999997763
No 388
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=28.21 E-value=1.1e+02 Score=22.50 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 043830 193 SGKSELEEALSQLFSDARVLEAQQMAAKQAF 223 (248)
Q Consensus 193 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 223 (248)
.+++.+.+.+.++|+||..+..+.+-.++|.
T Consensus 33 ~~~~~l~~q~~RML~dpr~~~~~~~F~~qWL 63 (128)
T PF07631_consen 33 RTPEQLRAQAERMLADPRARRFVERFFRQWL 63 (128)
T ss_pred CCHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 5899999999999999998888888777775
No 389
>PRK11058 GTPase HflX; Provisional
Probab=28.07 E-value=1.7e+02 Score=26.51 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCceEEecccCCCCCCccEEEE-cChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHhhCCcEE
Q 043830 92 GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVV-DTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAAAGCAVL 166 (248)
Q Consensus 92 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi 166 (248)
.+++.+++...|....-........++...||. |...++..+.. .+|++++...+.+. +-.| +|.. .|++|+
T Consensus 27 ~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~lsp~-q~~n-le~~-~~~~v~ 101 (426)
T PRK11058 27 LQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPA-QERN-LERL-CECRVI 101 (426)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCCCCHH-HHHH-HHHH-HCCeEe
Confidence 467777777777764432221111122333333 23455655543 46776654444332 1223 3432 477777
No 390
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=27.93 E-value=48 Score=25.06 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=39.5
Q ss_pred hHHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHhhCCcEEE-CCCCCChHHHH-HHHHhcCCceEEEcCCHHHHHHHHH
Q 043830 128 GELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAAAGCAVLT-GPHIGHYSNMV-SAMQRLNPKSVLQVSGKSELEEALS 203 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~Pvi~-~~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~l~~~i~ 203 (248)
.+...++..||++++.+|..-+ +.. .+++..--+.+++. ||.+.-.++.. +...+.= ....+.|++.+.+.+.
T Consensus 54 ~~~~~~l~~aD~viiTGsTlvN-~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v--~g~~v~d~~~~~~~i~ 129 (147)
T PF04016_consen 54 EDAEEILPWADVVIITGSTLVN-GTIDDILELARNAREVILYGPSAPLHPEALFDYGVTYV--GGSRVVDPEKVLRAIS 129 (147)
T ss_dssp GGHHHHGGG-SEEEEECHHCCT-TTHHHHHHHTTTSSEEEEESCCGGS-GGGGCCTT-SEE--EEEEES-HHHHHHHHC
T ss_pred HHHHHHHccCCEEEEEeeeeec-CCHHHHHHhCccCCeEEEEecCchhhHHHHHhCCCCEE--EEEEEeCHHHHHHHHH
Confidence 4778899999999987764322 111 24555554667774 77654444321 1111111 2345689888877664
No 391
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.80 E-value=1.6e+02 Score=18.40 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCce
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVV 106 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~ 106 (248)
-++++.+.+.+..++-.+.|..+++.-...+..+++..|...
T Consensus 12 Pl~~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~ 53 (69)
T cd00291 12 PVLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEV 53 (69)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEE
Confidence 355555555554455455666666655588999999988763
No 392
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=27.55 E-value=3.9e+02 Score=24.77 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=37.5
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCc--cEEE--EcChh--HHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRT--NVYV--VDTLG--ELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~--~v~~--~~~~~--~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. -.+++.+++.++|++......+...-+.+ ..++ .+..+ ....+++.||++++.++
T Consensus 199 vi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~ 271 (539)
T TIGR02418 199 VLLLGLRASSPETTEAVRRLLKKTQLPVVETFQGAGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGY 271 (539)
T ss_pred EEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecC
Confidence 778887653 23788999999999865443332111111 1121 12211 34568899999877554
No 393
>PRK13558 bacterio-opsin activator; Provisional
Probab=27.40 E-value=5.4e+02 Score=24.37 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=41.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~ 155 (248)
|.++++|+-+++.....+.......+. .+...+...+....+. ..|++++.... +++.|..+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~---------------~v~~~~~~~~al~~~~~~~~Dlvl~d~~l-p~~~g~~~ 69 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRL---------------DVTQIRDFVAARDRVEAGEIDCVVADHEP-DGFDGLAL 69 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCc---------------ceEeeCCHHHHHHHhhccCCCEEEEeccC-CCCcHHHH
Confidence 456788888776654444444333222 1222232223333332 25876664333 33334555
Q ss_pred HHHHh---hCCcEEECCCCCChHHHHHHH
Q 043830 156 SEAAA---AGCAVLTGPHIGHYSNMVSAM 181 (248)
Q Consensus 156 lEA~a---~G~Pvi~~~~~~~~~~~~~~~ 181 (248)
++.+. -..|+|+-....+.......+
T Consensus 70 l~~l~~~~~~~piI~lt~~~~~~~~~~al 98 (665)
T PRK13558 70 LEAVRQTTAVPPVVVVPTAGDEAVARRAV 98 (665)
T ss_pred HHHHHhcCCCCCEEEEECCCCHHHHHHHH
Confidence 66553 357888632222433344433
No 394
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=27.39 E-value=4.2e+02 Score=25.25 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred EEEecCCCCCHHHHHHHHHhcCCceEEeccc-----C-CCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCC
Q 043830 82 TIIVPRHPQHGKEIAQKLQKEGEVVALRSRH-----E-KLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 82 lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~-----~-~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~ 153 (248)
++++|++..-...+.+++.+.++.+.+-.-| . ...-+...-++++.+.--.+.+ .+|++++-.-- . .+-
T Consensus 239 il~iGHnv~~~~~i~dyleE~~l~d~vE~~GlccTA~D~tRy~~~aKvvGpls~ql~~IrsG~aDViVvDEqC-i--r~D 315 (772)
T COG1152 239 ILVIGHNVAPGTYIMDYLEENGLEDEVELAGLCCTAIDMTRYDEAAKVVGPLSKQLKVIRSGKADVIVVDEQC-I--RED 315 (772)
T ss_pred EEEeccccccchHHHHHHHhccchhhhheeeeeeeccccchhhhhhhhhchhhhhhhhhhcCCceEEEecccc-c--chh
Confidence 5667886554466777777666654321111 0 0000011123444433333333 48886662111 1 123
Q ss_pred CHHHHHhhCCcEEECCC----------CCChHHHHHHHHhc
Q 043830 154 NISEAAAAGCAVLTGPH----------IGHYSNMVSAMQRL 184 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~~~~----------~~~~~~~~~~~~~~ 184 (248)
.+.|++-.|.|+|+++. ..+..++++.++..
T Consensus 316 ileea~k~g~~vIat~~k~~~gLpD~Td~~~d~iV~~L~sg 356 (772)
T COG1152 316 ILEEASKLGIPVIATNEKGMLGLPDVTDEDVDEIVESLVSG 356 (772)
T ss_pred HHHHHhccCCceEechhHHhcCCCccccCCHHHHHHHHhcC
Confidence 46778888888887532 12444566666654
No 395
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.05 E-value=4.4e+02 Score=23.82 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=23.0
Q ss_pred HHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 132 QLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 132 ~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
..+..+|+++++|...+. -..+.+|...|+||+.
T Consensus 73 ~~~~~~dlVV~Spgi~~~--~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 73 DKLDGFDVIFKTPSMRID--SPELVKAKEEGAYITS 106 (458)
T ss_pred HHhccCCEEEECCCCCCC--chHHHHHHHcCCcEEe
Confidence 445678998887776542 1235677788889874
No 396
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=26.66 E-value=1.9e+02 Score=23.98 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=26.2
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPH 170 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~ 170 (248)
++..++..+|+++..++ +...-..+..++..|+|||+++.
T Consensus 53 dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigtt 92 (257)
T PRK00048 53 DLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTT 92 (257)
T ss_pred CHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECC
Confidence 55566667999764432 11112346889999999999853
No 397
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=26.44 E-value=3.6e+02 Score=21.99 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=21.4
Q ss_pred hhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 135 KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 135 ~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
..=|++|+.....+ -..+.||..+|+|+|+
T Consensus 154 ~~Pd~vii~d~~~~---~~ai~Ea~~l~IP~I~ 183 (225)
T TIGR01011 154 KLPDLLFVIDPVKE---KIAVAEARKLGIPVVA 183 (225)
T ss_pred cCCCEEEEeCCCcc---HHHHHHHHHcCCCEEE
Confidence 45677777543322 3458999999999997
No 398
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=26.22 E-value=3.2e+02 Score=21.35 Aligned_cols=20 Identities=5% Similarity=0.110 Sum_probs=11.4
Q ss_pred eEEEcCCHHHHHHHHHHhhh
Q 043830 188 SVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll~ 207 (248)
++..+-+.++|...+..++.
T Consensus 107 ~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 107 YICKPYSPREVVARVKTILR 126 (240)
T ss_pred EEECCCCHHHHHHHHHHHHh
Confidence 34445566677666665543
No 399
>PRK09191 two-component response regulator; Provisional
Probab=26.09 E-value=3.5e+02 Score=21.74 Aligned_cols=126 Identities=12% Similarity=0.061 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEE
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVI 142 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v 142 (248)
.+-+|.+.+++. ...+++|+.+++.....+...++..|.... ...+...+....+. ..|++++
T Consensus 124 ~l~ra~~~l~~~-~~~~~liidd~~~~~~~l~~~L~~~~~~~~--------------~~~~~~~~~l~~l~~~~~dlvi~ 188 (261)
T PRK09191 124 LLDDARAEIARQ-VATRVLIIEDEPIIAMDLEQLVESLGHRVT--------------GIARTRAEAVALAKKTRPGLILA 188 (261)
T ss_pred HHHHHHHHHhcc-CCCeEEEEcCcHHHHHHHHHHHhcCCCEEE--------------EEECCHHHHHHHHhccCCCEEEE
Confidence 445666666543 345678888876654566666665554311 12222222222222 3788777
Q ss_pred cCccCCCCCCCCHHHHHhh--CCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 143 GGSFLPGLAGHNISEAAAA--GCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~--G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
......+..|...++.+.. ..|+|+-............. .. .+++..+-+.+.|...+..++.
T Consensus 189 d~~~~~~~~g~e~l~~l~~~~~~pii~ls~~~~~~~~~~~~-~~-~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 189 DIQLADGSSGIDAVNDILKTFDVPVIFITAFPERLLTGERP-EP-AFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred ecCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHhc-cc-CceEECCCCHHHHHHHHHHHHh
Confidence 4332111123334444432 68998632222221111111 11 1234456788999888876553
No 400
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.93 E-value=1.5e+02 Score=22.95 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecC
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPR 87 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~ 87 (248)
.+++|+.+.++.. -+..++|.
T Consensus 65 Dil~al~~a~~~~--~~Iavv~~ 85 (176)
T PF06506_consen 65 DILRALAKAKKYG--PKIAVVGY 85 (176)
T ss_dssp HHHHHHHHCCCCT--SEEEEEEE
T ss_pred HHHHHHHHHHhcC--CcEEEEec
Confidence 5678887765433 35666665
No 401
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=25.72 E-value=42 Score=23.31 Aligned_cols=23 Identities=13% Similarity=-0.184 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
...++.|...|+++++|.++|.+
T Consensus 58 ~~V~~~L~~~gi~~~ri~~~g~G 80 (104)
T TIGR02802 58 NAVKDYLQAKGVSASQIETVSYG 80 (104)
T ss_pred HHHHHHHHHcCCCHHHeEEEeec
Confidence 46788899999999999998743
No 402
>PLN02757 sirohydrochlorine ferrochelatase
Probab=25.70 E-value=1.1e+02 Score=23.32 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=7.5
Q ss_pred HHHhCCCeEEEEe
Q 043830 73 LMQKNPNLVTIIV 85 (248)
Q Consensus 73 l~~~~~~~~lviv 85 (248)
+.+++|++.+++.
T Consensus 99 ~~~~~p~~~i~~~ 111 (154)
T PLN02757 99 AAKEHPGVKYLVT 111 (154)
T ss_pred HHHHCCCcEEEEC
Confidence 4455676665554
No 403
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=25.41 E-value=3.7e+02 Score=23.41 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhh-CCEEEEcCccCCCCCCCCHHH-HHhhCCcEE
Q 043830 91 HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKL-TPIAVIGGSFLPGLAGHNISE-AAAAGCAVL 166 (248)
Q Consensus 91 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~-ad~~~v~~s~~e~~gg~~~lE-A~a~G~Pvi 166 (248)
...+|.+.++++|+... ..++ ..+..+... .|++=++ |. + ..-..+++ ....|+|||
T Consensus 77 ~~~~L~~~~~~~Gi~~~----------------stpfd~~svd~l~~~~v~~~KIa-S~-~-~~n~pLL~~~A~~gkPvi 137 (329)
T TIGR03569 77 DHRELKEYCESKGIEFL----------------STPFDLESADFLEDLGVPRFKIP-SG-E-ITNAPLLKKIARFGKPVI 137 (329)
T ss_pred HHHHHHHHHHHhCCcEE----------------EEeCCHHHHHHHHhcCCCEEEEC-cc-c-ccCHHHHHHHHhcCCcEE
Confidence 34778888999988632 1111 234444444 6665443 32 2 11223455 466899999
Q ss_pred ECCCCCChHH---HHHHHHhcCC
Q 043830 167 TGPHIGHYSN---MVSAMQRLNP 186 (248)
Q Consensus 167 ~~~~~~~~~~---~~~~~~~~g~ 186 (248)
.+.......| +++.+.+.|.
T Consensus 138 lStGmatl~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 138 LSTGMATLEEIEAAVGVLRDAGT 160 (329)
T ss_pred EECCCCCHHHHHHHHHHHHHcCC
Confidence 9876656555 4555655553
No 404
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.27 E-value=3.7e+02 Score=22.94 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=33.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc-ChhHHHHHHhhCCEEEE
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-TLGELRQLYKLTPIAVI 142 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~y~~ad~~~v 142 (248)
+-+.+|+|++.--...+..++.+.+-. |.+.. ...++..+.+.||++++
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~at---------------Vtv~hs~T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNAT---------------VSVCHVFTDDLKKYTLDADILVV 213 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCE---------------EEEEeccCCCHHHHHhhCCEEEE
Confidence 457889998766557777777665432 22222 12478999999999765
No 405
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=25.24 E-value=4.6e+02 Score=22.88 Aligned_cols=92 Identities=13% Similarity=-0.009 Sum_probs=49.4
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHH-----hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecc-cCCCCC----
Q 043830 48 AHRQVWMASSIHRGEEKVMLAVHKVLMQ-----KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR-HEKLMP---- 117 (248)
Q Consensus 48 ~~~~v~l~~~~~~~~~~~ll~a~~~l~~-----~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~---- 117 (248)
.+-|||=+++.+...-..|++.+-.... ...++++.++|++..-...+...+..+|....+... +..+++
T Consensus 118 ~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~ 197 (338)
T PRK02255 118 ATVPVINGMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLA 197 (338)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHH
Confidence 3566665443322112345565543222 133678999998754445556666778876544332 211110
Q ss_pred ---------CccEEEEcChhHHHHHHhhCCEEEE
Q 043830 118 ---------RTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 118 ---------~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
...+.+. .++.+.+.-||++++
T Consensus 198 ~~~~~~~~~g~~~~~~---~d~~eav~~aDvvy~ 228 (338)
T PRK02255 198 IAEENCEVSGGSVLVT---DDVDEAVKDADFVYT 228 (338)
T ss_pred HHHHHHHhcCCeEEEE---cCHHHHhCCCCEEEE
Confidence 1113333 367888999999766
No 406
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=25.14 E-value=2e+02 Score=23.50 Aligned_cols=42 Identities=19% Similarity=0.047 Sum_probs=26.0
Q ss_pred HHHHHhhCCcEEECCCC-----C--------ChHHHHHHHHhcCCceEEEcCCHH
Q 043830 155 ISEAAAAGCAVLTGPHI-----G--------HYSNMVSAMQRLNPKSVLQVSGKS 196 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~-----~--------~~~~~~~~~~~~g~g~~~~~~~~~ 196 (248)
.++++..|+|||+.++. + --++.+.++...+.|+++.+-+.+
T Consensus 20 ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~ 74 (218)
T PRK00910 20 ALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDA 74 (218)
T ss_pred HHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHH
Confidence 58899999999985432 1 123455566666666665554433
No 407
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.03 E-value=4e+02 Score=22.70 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=32.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc-ChhHHHHHHhhCCEEEE
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-TLGELRQLYKLTPIAVI 142 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~y~~ad~~~v 142 (248)
+-+.+|+|++.--...+..++.+.|-. |.+.. ...++..+.+.||++++
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~gAt---------------Vtv~hs~t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAGAS---------------VSVCHILTKDLSFYTQNADIVCV 206 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCE---------------EEEEeCCcHHHHHHHHhCCEEEE
Confidence 457899999766556777776655433 22222 12478899999999765
No 408
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.92 E-value=2e+02 Score=20.10 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQ 90 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~ 90 (248)
...+.+..+.+++..|++.+++-|.+..
T Consensus 65 ~~~~~~l~~~~k~~~p~~~iv~GG~~~t 92 (121)
T PF02310_consen 65 LPEAKRLARAIKERNPNIPIVVGGPHAT 92 (121)
T ss_dssp HHHHHHHHHHHHTTCTTSEEEEEESSSG
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCchh
Confidence 3344555555666667776655555543
No 409
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=24.78 E-value=5e+02 Score=23.11 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=25.4
Q ss_pred HHHHHHhhCCEEEEcCccCC--CCCCCCH----HHHHhhCCcEEE
Q 043830 129 ELRQLYKLTPIAVIGGSFLP--GLAGHNI----SEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e--~~gg~~~----lEA~a~G~Pvi~ 167 (248)
.+.+.++.||+++++-...+ .+.|-++ --|-.+|+|||+
T Consensus 276 ~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPvia 320 (375)
T TIGR00045 276 DLEQKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIA 320 (375)
T ss_pred CHHHHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEE
Confidence 57888999999887633222 2335444 235567899996
No 410
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=24.74 E-value=6.8e+02 Score=24.64 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=59.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++||-+++.....+...+...|.. |.....-.+.-..+. .-|++++-... +++.|..++
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~---------------v~~~~~~~~al~~~~~~~~dlil~D~~m-p~~~g~~~~ 730 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEH---------------VVLCDSGHQAVEQAKQRPFDLILMDIQM-PGMDGIRAC 730 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCE---------------EEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCcHHHHH
Confidence 356888887665545666666665543 222222222222332 35887663322 323344455
Q ss_pred HHHh-----hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAA-----AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+. ..+|||+-............+ +.| .+++..|-+.+.|...+.+++.
T Consensus 731 ~~lr~~~~~~~~pii~lt~~~~~~~~~~~~-~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 731 ELIRQLPHNQNTPIIAVTAHAMAGERERLL-SAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred HHHHhcccCCCCCEEEEeCCCCHHHHHHHH-HcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 5443 357888632222332333333 333 2456667899999999988764
No 411
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=24.71 E-value=4.5e+02 Score=22.52 Aligned_cols=92 Identities=8% Similarity=-0.025 Sum_probs=50.7
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHH--hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecc-cCCCCC-------
Q 043830 48 AHRQVWMASSIHRGEEKVMLAVHKVLMQ--KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR-HEKLMP------- 117 (248)
Q Consensus 48 ~~~~v~l~~~~~~~~~~~ll~a~~~l~~--~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~------- 117 (248)
.+.|||=+++.+..--..|++.+-.... ...++++.++|++..-...+...+..+|.+..+... ...++.
T Consensus 119 ~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~ 198 (304)
T PRK00779 119 STVPVINGLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIA 198 (304)
T ss_pred CCCCEEeCCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHH
Confidence 3567776654322112345565543221 234578999998655445666667788886544332 111110
Q ss_pred ---CccEEEEcChhHHHHHHhhCCEEEE
Q 043830 118 ---RTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 118 ---~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
...+.+. .++.+.+..||++++
T Consensus 199 ~~~g~~~~~~---~d~~~a~~~aDvvy~ 223 (304)
T PRK00779 199 KETGASIEVT---HDPKEAVKGADVVYT 223 (304)
T ss_pred HHcCCeEEEE---cCHHHHhCCCCEEEe
Confidence 0112222 477888999999765
No 412
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.65 E-value=3.3e+02 Score=20.94 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=19.3
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEE
Q 043830 49 HRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTI 83 (248)
Q Consensus 49 ~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lv 83 (248)
+.+++++++. + +.+-++...+.+++|++.++
T Consensus 48 ~~~ifllG~~-~---~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 48 GKRIFLLGGS-E---EVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred CCeEEEEeCC-H---HHHHHHHHHHHHHCCCeEEE
Confidence 4467777653 1 34455666778889986643
No 413
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=24.62 E-value=4.4e+02 Score=22.47 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=34.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEEc
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v~ 143 (248)
.+-+.+|+|+++--...+..++...+-.. -+... ..++..+.+.||++++.
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTV---------------tvcHs~T~~l~~~~k~ADIvv~A 206 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANATV---------------TVCHSRTKDLASITKNADIVVVA 206 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCCEE---------------EEEcCCCCCHHHHhhhCCEEEEe
Confidence 45678999997766577777776644332 22221 13789999999997763
No 414
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.55 E-value=3.9e+02 Score=22.93 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=5.1
Q ss_pred HHHhCCCeEE
Q 043830 73 LMQKNPNLVT 82 (248)
Q Consensus 73 l~~~~~~~~l 82 (248)
|++++|++++
T Consensus 178 l~~~~~~~~v 187 (298)
T PRK01045 178 LKERFPEIQG 187 (298)
T ss_pred HHHhCcCccc
Confidence 4445666543
No 415
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=24.46 E-value=79 Score=25.24 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=35.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHh-hCCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYK-LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~-~ad~~~v~~s~~e~~gg~~~ 155 (248)
..+|++-|. ..+++.+.+++.++. ++.| +..|+...+. -+|++=++|.-. +||...
T Consensus 80 GA~FivSP~---~~~~v~~~~~~~~i~----------------~iPG~~TptEi~~A~~~G~~~vK~FPA~~--~GG~~~ 138 (196)
T PF01081_consen 80 GAQFIVSPG---FDPEVIEYAREYGIP----------------YIPGVMTPTEIMQALEAGADIVKLFPAGA--LGGPSY 138 (196)
T ss_dssp T-SEEEESS-----HHHHHHHHHHTSE----------------EEEEESSHHHHHHHHHTT-SEEEETTTTT--TTHHHH
T ss_pred CCCEEECCC---CCHHHHHHHHHcCCc----------------ccCCcCCHHHHHHHHHCCCCEEEEecchh--cCcHHH
Confidence 345666664 226677777777664 2333 3456655544 467766666432 345666
Q ss_pred HHHHhh---CCcEEE
Q 043830 156 SEAAAA---GCAVLT 167 (248)
Q Consensus 156 lEA~a~---G~Pvi~ 167 (248)
+-++.- +.|.+.
T Consensus 139 ik~l~~p~p~~~~~p 153 (196)
T PF01081_consen 139 IKALRGPFPDLPFMP 153 (196)
T ss_dssp HHHHHTTTTT-EEEE
T ss_pred HHHHhccCCCCeEEE
Confidence 666654 455554
No 416
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=24.46 E-value=3.7e+02 Score=21.54 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=12.8
Q ss_pred hHHHHHHhhCCEEEEcC
Q 043830 128 GELRQLYKLTPIAVIGG 144 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~~ 144 (248)
.++.+.+..||++|+++
T Consensus 75 ~~~~~~l~~ad~I~~~G 91 (217)
T cd03145 75 PEVVARLRDADGIFFTG 91 (217)
T ss_pred HHHHHHHHhCCEEEEeC
Confidence 36677888999988843
No 417
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=24.46 E-value=2.6e+02 Score=22.46 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=27.9
Q ss_pred HHHHHhhCCcEEECCCC-------------CChHHHHHHHHhcCCceEEEcCCHHHH
Q 043830 155 ISEAAAAGCAVLTGPHI-------------GHYSNMVSAMQRLNPKSVLQVSGKSEL 198 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~-------------~~~~~~~~~~~~~g~g~~~~~~~~~~l 198 (248)
.+|++..|+|||+.++. .--++.+.++...+.|+++.+-+.+..
T Consensus 9 ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~ 65 (203)
T COG0108 9 AIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERA 65 (203)
T ss_pred HHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHH
Confidence 58999999999985432 112355566666666666665554443
No 418
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=24.41 E-value=2.8e+02 Score=25.43 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=32.9
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCc
Q 043830 52 VWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEV 105 (248)
Q Consensus 52 v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~ 105 (248)
++++||+..++.+.++.-+..|.+..-+.-+|++|.-..+ +++++.+.+.++.
T Consensus 124 ILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIyAGN~~a~-~~V~~il~~~~~~ 176 (463)
T TIGR01319 124 ILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIVAGNKDIQ-DEVQEIFDHADIF 176 (463)
T ss_pred EEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEEeCCHHHH-HHHHHHHhcCCce
Confidence 5556666666666777766666554445556777864443 6777777665554
No 419
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=24.34 E-value=2.2e+02 Score=23.18 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=28.1
Q ss_pred HHHHHhhCCcEEECCCC-----C--------ChHHHHHHHHhcCCceEEEcCCHH
Q 043830 155 ISEAAAAGCAVLTGPHI-----G--------HYSNMVSAMQRLNPKSVLQVSGKS 196 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~-----~--------~~~~~~~~~~~~g~g~~~~~~~~~ 196 (248)
.++++..|+|||+.++. + --++.+.++...+.|+++.+-+.+
T Consensus 6 ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~ 60 (219)
T PRK05773 6 ARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNS 60 (219)
T ss_pred HHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHH
Confidence 58999999999996432 1 124556677777777776654444
No 420
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.32 E-value=5.1e+02 Score=23.06 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCC
Q 043830 61 GEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTP 138 (248)
Q Consensus 61 ~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad 138 (248)
..+..++++++.- ...+. ++|+.|... ..+.+......+....... .....+.++. +..+...++..||
T Consensus 195 ~~l~~ll~~~~~~---~~pv~-llvp~g~~~-~~~~~~~~~~~~~~g~~~~----~g~l~l~~lPF~~Q~~yD~LLw~cD 265 (374)
T PF10093_consen 195 AALASLLDAWAAS---PKPVH-LLVPEGRAL-NSLAAWLGDALLQAGDSWQ----RGNLTLHVLPFVPQDDYDRLLWACD 265 (374)
T ss_pred hHHHHHHHHHhcC---CCCeE-EEecCCccH-HHHHHHhccccccCccccc----cCCeEEEECCCCCHHHHHHHHHhCc
Confidence 3467788887532 23354 445544433 5565554311111100000 1122344444 3467888999999
Q ss_pred EEEEcCccCCCCCCCCHHHHHhhCCcEE--ECCCC
Q 043830 139 IAVIGGSFLPGLAGHNISEAAAAGCAVL--TGPHI 171 (248)
Q Consensus 139 ~~~v~~s~~e~~gg~~~lEA~a~G~Pvi--~~~~~ 171 (248)
+-||-+ | =+++=|.-.|+|.| +.|..
T Consensus 266 ~NfVRG---E----DSfVRAqwAgkPFvWhIYpQ~ 293 (374)
T PF10093_consen 266 FNFVRG---E----DSFVRAQWAGKPFVWHIYPQE 293 (374)
T ss_pred cceEec---c----hHHHHHHHhCCCceEecCcCc
Confidence 999932 2 24689999999999 45543
No 421
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=24.23 E-value=3.4e+02 Score=21.01 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=35.0
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCH---HHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHh
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNI---SEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQL 205 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~---lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~l 205 (248)
++..-++.||++|.+-=+.|.. -..+ +|+-.-.+|++++- .+.+|+...- .-| -....++.......+.++
T Consensus 50 ~~~~aia~ADii~~smlF~ed~-v~~l~~~L~~~r~~~~a~i~~--~sapelm~lT-rlG--~f~m~~~~~g~~~~lKkl 123 (164)
T PF11965_consen 50 ECEAAIARADIIFGSMLFIEDH-VRPLLPALEARRDHCPAMIIF--ESAPELMRLT-RLG--KFSMGGEKSGPPALLKKL 123 (164)
T ss_pred HHHHHHHhCCEEEeehhhhHHH-HHHHHHHHHHHHccCCEEEEE--cCHHHHHHHh-ccc--ceecCCCCcchHHHHHHH
Confidence 4566677888855422122221 2223 33343356776532 2455665432 223 222245556666666666
Q ss_pred h
Q 043830 206 F 206 (248)
Q Consensus 206 l 206 (248)
.
T Consensus 124 ~ 124 (164)
T PF11965_consen 124 R 124 (164)
T ss_pred H
Confidence 5
No 422
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=23.86 E-value=2.2e+02 Score=23.10 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=26.0
Q ss_pred HHHHHhhCCcEEECCCC-----CC--------hHHHHHHHHhcCCceEEEcCCHH
Q 043830 155 ISEAAAAGCAVLTGPHI-----GH--------YSNMVSAMQRLNPKSVLQVSGKS 196 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~-----~~--------~~~~~~~~~~~g~g~~~~~~~~~ 196 (248)
.+|++..|+|||+.++. ++ -++.+.++...+.|+++.+-+.+
T Consensus 19 ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~ 73 (214)
T PRK01792 19 AINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDE 73 (214)
T ss_pred HHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHH
Confidence 58899999999985432 11 23455666666666665543433
No 423
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.85 E-value=2.2e+02 Score=26.80 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=52.2
Q ss_pred EEcChhHHHHHHhhCCEEEEcCccC-----CCCCCCCHHHHHhhCC-cEEECCCC-CChHHHHHHHHhcCCceEEEcCCH
Q 043830 123 VVDTLGELRQLYKLTPIAVIGGSFL-----PGLAGHNISEAAAAGC-AVLTGPHI-GHYSNMVSAMQRLNPKSVLQVSGK 195 (248)
Q Consensus 123 ~~~~~~~l~~~y~~ad~~~v~~s~~-----e~~gg~~~lEA~a~G~-Pvi~~~~~-~~~~~~~~~~~~~g~g~~~~~~~~ 195 (248)
+.|..+.-.+++..+..+++.+-.. +++ -.-++||+-.|. |||.|+.. =.+.+.++.-. . +++.++-.
T Consensus 403 lcg~~~~RrqLlk~STF~lilpp~d~rv~S~~~-~~r~~eaL~~GavPviLg~~~~LPyqd~idWrr-a---al~lPkaR 477 (907)
T KOG2264|consen 403 LCGERERRRQLLKSSTFCLILPPGDPRVISEMF-FQRFLEALQLGAVPVILGNSQLLPYQDLIDWRR-A---ALRLPKAR 477 (907)
T ss_pred hccchHHHHHHhccceeEEEecCCCcchhhHHH-HHHHHHHHhcCCeeEEeccccccchHHHHHHHH-H---hhhCCccc
Confidence 4455567788899999888755211 111 233689999986 99998643 12334443321 1 22333221
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh
Q 043830 196 SELEEALSQLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 196 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
-.=+.-+.+-++|.++. .|++.||-.-+.+
T Consensus 478 ~tE~HFllrs~~dsDll-~mRRqGRl~wEtY 507 (907)
T KOG2264|consen 478 LTEAHFLLRSFEDSDLL-EMRRQGRLFWETY 507 (907)
T ss_pred cchHHHHHHhcchhhHH-HHHhhhhhhHHHH
Confidence 11123355555566554 4666676554433
No 424
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=23.76 E-value=3.9e+02 Score=21.46 Aligned_cols=111 Identities=5% Similarity=0.004 Sum_probs=54.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHH-HH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNIS-EA 158 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~l-EA 158 (248)
..++++.+||-....++..+. .++... .......+........|++++--+. ++..|...+ +.
T Consensus 11 ~~~~~v~~~~l~~~~l~~~L~-~~~~v~--------------~~~~~~~~~~~~~~~~DvvllDi~~-p~~~G~~~~~~~ 74 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLK-QSLAIT--------------GKLHNIQRSLDDISSGSIILLDMME-ADKKLIHYWQDT 74 (216)
T ss_pred ceEEEEeChHhhhHHHHHHHH-HhCCCe--------------EEEcCHHHhhccCCCCCEEEEECCC-CCccHHHHHHHH
Confidence 457778888776666777664 223211 1111111222222336786663333 221233332 33
Q ss_pred H---hhCCcEEECCCCCChHHHHHHHHh-cCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 159 A---AAGCAVLTGPHIGHYSNMVSAMQR-LNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 159 ~---a~G~Pvi~~~~~~~~~~~~~~~~~-~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
+ .-+.|||+-....+ .....+.. .|. |++....++++|.++|...++.
T Consensus 75 i~~~~p~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 75 LSRKNNNIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred HHHhCCCCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 2 24677886221112 12222221 132 4555557999999999988874
No 425
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=23.71 E-value=3.5e+02 Score=20.95 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 162 GCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 162 G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
..|+|+-....+.......+ ..|. +++..+.+.++|.+.+..++.
T Consensus 74 ~~pii~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 74 TLPIIFLTARDSDFDTVSGL-RLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred CCCEEEEECCCCHHHHHHHH-hcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 56777532222332333333 2332 345556777888887776664
No 426
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.47 E-value=2.6e+02 Score=19.28 Aligned_cols=70 Identities=7% Similarity=0.020 Sum_probs=40.5
Q ss_pred EEEecCCCCC---HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHH
Q 043830 82 TIIVPRHPQH---GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 82 lvivG~~~~~---~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
++++|.|... ...+++.+++.|++..+. - -...++......+|+++++|-+.. -..-++.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~-------------a-~~~~~~~~~~~~~Dvill~pqi~~---~~~~i~~ 69 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIA-------------A-GSYGAAGEKLDDADVVLLAPQVAY---MLPDLKK 69 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEE-------------E-ecHHHHHhhcCCCCEEEECchHHH---HHHHHHH
Confidence 4556666431 256777778887763221 1 123567777788999887665431 1122444
Q ss_pred H--hhCCcEEEC
Q 043830 159 A--AAGCAVLTG 168 (248)
Q Consensus 159 ~--a~G~Pvi~~ 168 (248)
. ..|+||..-
T Consensus 70 ~~~~~~ipv~~I 81 (95)
T TIGR00853 70 ETDKKGIPVEVI 81 (95)
T ss_pred HhhhcCCCEEEe
Confidence 3 347799974
No 427
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=23.45 E-value=99 Score=22.01 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=28.9
Q ss_pred ccEEEEcC-hhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECC
Q 043830 119 TNVYVVDT-LGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGP 169 (248)
Q Consensus 119 ~~v~~~~~-~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~ 169 (248)
..|+++.. -.++-..+..|-.++. -.+|..++..+=++..|+|||+|-
T Consensus 33 g~iLv~~std~d~v~~~eKa~aiIt---ee~glTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 33 GVILVTPSTDADFVPALEKAAAIIT---EEGGLTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred CcEEEeccCChhhHHHHHhhheeEe---ccCCccccceeeEeecCCcEEEEe
Confidence 34555543 3566666776655443 112333455677789999999863
No 428
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.42 E-value=5.5e+02 Score=23.11 Aligned_cols=42 Identities=10% Similarity=-0.092 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceE
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVA 107 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~ 107 (248)
.+.+++.........-++.|+|+ +...-.+.+.+.++|....
T Consensus 289 ~~~~~~~~~~~~l~gkrv~i~g~-~~~~~~la~~L~elGm~v~ 330 (435)
T cd01974 289 RLVDAMTDSHQYLHGKKFALYGD-PDFLIGLTSFLLELGMEPV 330 (435)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcC-hHHHHHHHHHHHHCCCEEE
Confidence 44555554444444567777775 3343456667778888753
No 429
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=23.41 E-value=1.1e+02 Score=27.92 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCC-cEEECCC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGC-AVLTGPH 170 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~-Pvi~~~~ 170 (248)
...+.|+.|..|+..++... +-.-++||+..|+ |||+++.
T Consensus 336 ~y~~~m~~S~FCL~p~Gd~~--ts~R~fdai~~gCvPViisd~ 376 (464)
T KOG1021|consen 336 NYMEGMQDSKFCLCPPGDTP--TSPRLFDAIVSGCVPVIISDG 376 (464)
T ss_pred hHHHHhhcCeEEECCCCCCc--ccHhHHHHHHhCCccEEEcCC
Confidence 56677889988877554433 2345899999998 9999764
No 430
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=23.31 E-value=4.5e+02 Score=23.15 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=9.5
Q ss_pred EEEEeCCCcchHHHHHHHH
Q 043830 52 VWMASSIHRGEEKVMLAVH 70 (248)
Q Consensus 52 v~l~~~~~~~~~~~ll~a~ 70 (248)
++++++...++.+.+++.+
T Consensus 308 ~~V~G~~~dkd~~~~~~~l 326 (397)
T TIGR01499 308 ILLFGALADKDAAAMLAPL 326 (397)
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 3455544445555555554
No 431
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=3.4e+02 Score=20.61 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=43.3
Q ss_pred cChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHH--------HHHHHhcCCceEEEcCCHH
Q 043830 125 DTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNM--------VSAMQRLNPKSVLQVSGKS 196 (248)
Q Consensus 125 ~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~--------~~~~~~~g~g~~~~~~~~~ 196 (248)
+...++..+...|.+++. . . |--+++-++..++|.|+.++...+.|. ...+.+.+ +++.+.+.+
T Consensus 54 ~~~~kiQsli~darIVIS---H-a--G~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~--~vv~~spte 125 (161)
T COG5017 54 DKEEKIQSLIHDARIVIS---H-A--GEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEIN--YVVACSPTE 125 (161)
T ss_pred chHHHHHHHhhcceEEEe---c-c--CcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcC--ceEEEcCCc
Confidence 444688888999997543 2 1 345689999999999986655433332 33344444 555555444
Q ss_pred H-HHHHHH
Q 043830 197 E-LEEALS 203 (248)
Q Consensus 197 ~-l~~~i~ 203 (248)
. |.+.+.
T Consensus 126 ~~L~a~l~ 133 (161)
T COG5017 126 LVLQAGLQ 133 (161)
T ss_pred hhhHHhHh
Confidence 4 444443
No 432
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.23 E-value=2.9e+02 Score=22.29 Aligned_cols=68 Identities=15% Similarity=0.004 Sum_probs=33.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhh-CCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKL-TPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~-ad~~~v~~s~~e~~gg~~~ 155 (248)
...|++.+.- .+++.+.+++.++. ++.| +..|+...+.. +|++-++|.-. +||...
T Consensus 87 GA~FivsP~~---~~~vi~~a~~~~i~----------------~iPG~~TptEi~~a~~~Ga~~vKlFPa~~--~gg~~~ 145 (212)
T PRK05718 87 GAQFIVSPGL---TPPLLKAAQEGPIP----------------LIPGVSTPSELMLGMELGLRTFKFFPAEA--SGGVKM 145 (212)
T ss_pred CCCEEECCCC---CHHHHHHHHHcCCC----------------EeCCCCCHHHHHHHHHCCCCEEEEccchh--ccCHHH
Confidence 3455665542 14566666666554 2223 23466555543 67766665321 234444
Q ss_pred HHHHh---hCCcEEE
Q 043830 156 SEAAA---AGCAVLT 167 (248)
Q Consensus 156 lEA~a---~G~Pvi~ 167 (248)
+-++. -+.|++.
T Consensus 146 lk~l~~p~p~~~~~p 160 (212)
T PRK05718 146 LKALAGPFPDVRFCP 160 (212)
T ss_pred HHHHhccCCCCeEEE
Confidence 44433 3455554
No 433
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=23.08 E-value=5.3e+02 Score=22.82 Aligned_cols=126 Identities=12% Similarity=0.087 Sum_probs=73.9
Q ss_pred HHhCCC-eEEEEecC--CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh-CCEEEEcCccCCC
Q 043830 74 MQKNPN-LVTIIVPR--HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL-TPIAVIGGSFLPG 149 (248)
Q Consensus 74 ~~~~~~-~~lvivG~--~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~-ad~~~v~~s~~e~ 149 (248)
-+..|+ +..+-|-. +....++....+..+.+.. ....-|-+.+ +++.+++. +|++ | |..-+
T Consensus 216 YR~~P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr-----------~gkasfegR~-~~p~fla~~tD~V-v--SHqWe 280 (364)
T PF10933_consen 216 YRADPDAVEHVYVTNTYHLKEHPTFVNFANSLDLVR-----------DGKASFEGRF-DFPDFLAQHTDAV-V--SHQWE 280 (364)
T ss_pred HHhChhhcceEEEecchhhhcCHHHHHHHHhhHHhh-----------cCeeEEeeec-ChHHHHHhCCCEE-E--ecccc
Confidence 344565 34455543 2222356666666655531 1122233333 66777654 8984 4 43322
Q ss_pred CCCCC--HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHh
Q 043830 150 LAGHN--ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 150 ~gg~~--~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~ 226 (248)
-|+| .+||+.-|=|.|- |.+ .+.+. |+..+-.|..+=++++.+.+. +.+..+...+++++.....
T Consensus 281 -N~lNYlY~daLyggYPLVH-----NS~----~l~d~--GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~ 348 (364)
T PF10933_consen 281 -NPLNYLYYDALYGGYPLVH-----NSP----LLKDV--GYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDRL 348 (364)
T ss_pred -chhhHHHHHHHhcCCCccc-----Ccc----hhccc--CcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhh
Confidence 3677 4999999999995 221 23333 366666788888887777765 4556677777888877654
No 434
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=22.98 E-value=1.8e+02 Score=19.61 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHH
Q 043830 193 SGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL--SSGIVANVWNLLNF 240 (248)
Q Consensus 193 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 240 (248)
++.+.|.+.+..-|.....+..+.+.++..+.+. ..-.+..+++.+.+
T Consensus 14 Ge~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P 63 (86)
T PF10163_consen 14 GEYERLKELLRQRLIECGWRDEVRQLCREIIRERGIDNLTFEDLLEEITP 63 (86)
T ss_dssp THHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Confidence 5788888889888888888999999999888762 33445555555544
No 435
>PLN02342 ornithine carbamoyltransferase
Probab=22.86 E-value=5.3e+02 Score=22.68 Aligned_cols=92 Identities=4% Similarity=-0.119 Sum_probs=49.0
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHH--hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecc-cCCCCC-------
Q 043830 48 AHRQVWMASSIHRGEEKVMLAVHKVLMQ--KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR-HEKLMP------- 117 (248)
Q Consensus 48 ~~~~v~l~~~~~~~~~~~ll~a~~~l~~--~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~------- 117 (248)
..-|||=+++.+..--..|++.+-.... ...++++.++|++..-...+...+..+|....+... +..+.+
T Consensus 161 ~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~ 240 (348)
T PLN02342 161 SSVPVINGLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKAR 240 (348)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHH
Confidence 3556665544322112345555443222 234678999998765445666667788876443332 221110
Q ss_pred --C-ccEEEEcChhHHHHHHhhCCEEEE
Q 043830 118 --R-TNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 118 --~-~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
. ..+.+. .++.+.+..||++++
T Consensus 241 ~~g~~~~~~~---~d~~eav~~aDVvy~ 265 (348)
T PLN02342 241 AAGISKIEIT---NDPAEAVKGADVVYT 265 (348)
T ss_pred HhCCCcEEEE---cCHHHHhCCCCEEEE
Confidence 0 023333 367788999999765
No 436
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=22.84 E-value=1.6e+02 Score=16.65 Aligned_cols=24 Identities=4% Similarity=0.217 Sum_probs=17.7
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHH
Q 043830 201 ALSQLFSDARVLEAQQMAAKQAFC 224 (248)
Q Consensus 201 ~i~~ll~~~~~~~~~~~~~~~~~~ 224 (248)
.+.++|.+++...-+...++..+.
T Consensus 6 sVD~lL~~~~~~~l~~~~~r~~v~ 29 (40)
T PF12390_consen 6 SVDELLQEPEIQDLIERYGRPLVV 29 (40)
T ss_pred hHHHHHhChhhHHHHHHcCHHHHH
Confidence 367788888887777777777654
No 437
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.75 E-value=4.8e+02 Score=22.21 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=33.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEE
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVI 142 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v 142 (248)
.-+.+|+|++.--...+..++.+.+-. |.+... ..++..+.+.||++++
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~at---------------Vt~chs~T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMNAT---------------VTLCHSKTQNLPSIVRQADIIVG 208 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCE---------------EEEeCCCCCCHHHHHhhCCEEEE
Confidence 347889998776667777777665432 233331 2478999999999765
No 438
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=22.65 E-value=93 Score=22.21 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=26.3
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
+++|+|+|+-- -++.+.++++|++... +..+.+.....+..||-++.
T Consensus 4 kvLIanrGeia-~r~~ra~r~~Gi~tv~--------------v~s~~d~~s~~~~~ad~~~~ 50 (110)
T PF00289_consen 4 KVLIANRGEIA-VRIIRALRELGIETVA--------------VNSNPDTVSTHVDMADEAYF 50 (110)
T ss_dssp EEEESS-HHHH-HHHHHHHHHTTSEEEE--------------EEEGGGTTGHHHHHSSEEEE
T ss_pred EEEEECCCHHH-HHHHHHHHHhCCccee--------------ccCchhccccccccccccee
Confidence 56778887653 4555667788876432 11112234556777777655
No 439
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.58 E-value=2e+02 Score=23.75 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=19.8
Q ss_pred CEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 138 PIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 138 d~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
|+++|..+. |. -..++||.-+++|+|.
T Consensus 175 D~vvvln~~-e~--~sAilEA~K~~IPTIg 201 (251)
T KOG0832|consen 175 DLVVVLNPE-EN--HSAILEAAKMAIPTIG 201 (251)
T ss_pred ceeEecCcc-cc--cHHHHHHHHhCCCeEE
Confidence 777775544 32 2348999999999996
No 440
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=22.53 E-value=1.1e+02 Score=25.34 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCce
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVV 106 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~ 106 (248)
.+.+..+-..+. . -.++||-+.-+. ..-.-.+++.|+..
T Consensus 126 ~en~~~a~~i~~-~---~~~iIVTq~fHm-~RA~~ia~~~Gi~~ 164 (239)
T PRK10834 126 LDSIVRTRKVFD-T---NDFIIITQRFHC-ERALFIALHMGIQA 164 (239)
T ss_pred HHHHHHHHHHhC-C---CCEEEECCHHHH-HHHHHHHHHcCCce
Confidence 345555543332 1 136788775443 44445577888864
No 441
>PRK09932 glycerate kinase II; Provisional
Probab=22.40 E-value=5.6e+02 Score=22.86 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=25.7
Q ss_pred HHHHHHhhCCEEEEcCccCC--CCCCCCH----HHHHhhCCcEEE
Q 043830 129 ELRQLYKLTPIAVIGGSFLP--GLAGHNI----SEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e--~~gg~~~----lEA~a~G~Pvi~ 167 (248)
.+.+.++.||+++++-...+ .+.|.++ --|-.+|+|||+
T Consensus 277 ~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~ 321 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIG 321 (381)
T ss_pred ChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEE
Confidence 57788999999887633222 2235544 345667999996
No 442
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.40 E-value=2.1e+02 Score=17.92 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCce
Q 043830 66 MLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVV 106 (248)
Q Consensus 66 ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~ 106 (248)
++.+-+++ +..++-.+.|..+++.....+.+++++.|...
T Consensus 13 ~l~~k~al-~~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~~ 52 (67)
T cd03421 13 VIKTKKAL-ELEAGGEIEVLVDNEVAKENVSRFAESRGYEV 52 (67)
T ss_pred HHHHHHHH-hcCCCCEEEEEEcChhHHHHHHHHHHHcCCEE
Confidence 44554555 33344345555665655578999999998875
No 443
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=22.17 E-value=4.3e+02 Score=21.45 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=58.4
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh-CCEEEEcCccCCCCCCCCHHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL-TPIAVIGGSFLPGLAGHNISEAA 159 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~-ad~~~v~~s~~e~~gg~~~lEA~ 159 (248)
+++||-+.++..+.+.....+.|.... ....-.+-..+... .|++++--.+ ++.-|..+..-+
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~---------------~~~~~~~a~~~~~~~~dlviLD~~l-P~~dG~~~~~~i 65 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVD---------------VAADGEEALEAAREQPDLVLLDLML-PDLDGLELCRRL 65 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEE---------------EECCHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHH
Confidence 456666665554556666666665422 11111122222221 7776552111 222344444444
Q ss_pred h----hCCcEEE-CCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 160 A----AGCAVLT-GPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 160 a----~G~Pvi~-~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
- ...|||+ |.. +.-.+.+..+ +.|+ .++..|-++++|...|..++..
T Consensus 66 R~~~~~~~PIi~Lta~-~~~~d~v~gl-~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 66 RAKKGSGPPIIVLTAR-DDEEDRVLGL-EAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred HhhcCCCCcEEEEECC-CcHHHHHHHH-hCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 4 6778886 433 2333444333 3443 4677789999999999988863
No 444
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.17 E-value=4.6e+02 Score=22.45 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=32.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc-ChhHHHHHHhhCCEEEEc
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-TLGELRQLYKLTPIAVIG 143 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~y~~ad~~~v~ 143 (248)
+-+.+|+|+.......+...+.+.|.. |.+++ ...++.++.+.||++++.
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~t---------------Vtv~~~rT~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANAT---------------VTIAHSRTRDLPAVCRRADILVAA 208 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCE---------------EEEECCCCCCHHHHHhcCCEEEEe
Confidence 457888997666556777776665543 33342 223678888999997663
No 445
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.00 E-value=2.4e+02 Score=23.16 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=25.2
Q ss_pred HHHHHhhCCcEEECCCC-----CC--------hHHHHHHHHhcCCceEEEcCCH
Q 043830 155 ISEAAAAGCAVLTGPHI-----GH--------YSNMVSAMQRLNPKSVLQVSGK 195 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~-----~~--------~~~~~~~~~~~g~g~~~~~~~~ 195 (248)
.++++..|+|||+.++. ++ -++.+.++.+.+.|+++.+-+.
T Consensus 24 ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~ 77 (230)
T PRK00014 24 ALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPG 77 (230)
T ss_pred HHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCH
Confidence 47889999999986432 11 2345556666666666554333
No 446
>PRK08617 acetolactate synthase; Reviewed
Probab=21.98 E-value=5.3e+02 Score=23.93 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=36.9
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCcc-EEEEcC---h--hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTN-VYVVDT---L--GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~-v~~~~~---~--~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+-. ..+++.+++.++|.+......+....+.++ -.+.|. . .....++..||++++.++
T Consensus 205 vi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~ 277 (552)
T PRK08617 205 VLLLGMRASSPEVTAAIRRLLERTNLPVVETFQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGY 277 (552)
T ss_pred EEEECCCcchhhHHHHHHHHHHHhCCCEEeccccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecC
Confidence 678888643 237888999999998654433321111111 112221 1 134567889999887554
No 447
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=21.89 E-value=4.4e+02 Score=21.45 Aligned_cols=54 Identities=13% Similarity=0.346 Sum_probs=31.1
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCC---HHHHHHHHHhcCCc
Q 043830 47 LAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQH---GKEIAQKLQKEGEV 105 (248)
Q Consensus 47 ~~~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~---~~~l~~~~~~~~l~ 105 (248)
+.+.-+++..+.|+. .+++....+++ .+.+.||+|....+ ..++++.+.++|+.
T Consensus 49 i~~~Dl~I~y~lHPD---l~~~l~~~~~e--~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~ 105 (217)
T PF02593_consen 49 IPEADLLIAYGLHPD---LTYELPEIAKE--AGVKAVIVPSESPKPGLRRQLKKQLEEFGIE 105 (217)
T ss_pred CCCCCEEEEeccCch---hHHHHHHHHHH--cCCCEEEEecCCCccchHHHHHHHHHhcCce
Confidence 444456665556653 33444444433 45778888864322 25788888877764
No 448
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=21.82 E-value=48 Score=18.92 Aligned_cols=22 Identities=14% Similarity=-0.069 Sum_probs=15.6
Q ss_pred CHHHHHHHHHcCCCCCCeEEcC
Q 043830 1 STLQAIRFQLLEASPFTINFSG 22 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~g 22 (248)
|+.++..+.+.|++.+.|.-+|
T Consensus 6 sP~ar~la~e~gidl~~v~gtG 27 (39)
T PF02817_consen 6 SPAARKLAAELGIDLSQVKGTG 27 (39)
T ss_dssp SHHHHHHHHHTT--GGGSSSSS
T ss_pred CHHHHHHHHHcCCCcccccccC
Confidence 6778888888999988776555
No 449
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=21.79 E-value=5.3e+02 Score=22.36 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHH
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKL 99 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~ 99 (248)
+-.+.+..+++.+||..+++- |+-..++.+.+
T Consensus 196 ft~~~i~~~k~~~Pda~vlvH---PEC~~~Vv~~A 227 (324)
T COG0379 196 FTAEDIEELKEKYPDAEVLVH---PECPPEVVELA 227 (324)
T ss_pred cCHHHHHHHHHHCCCCEEEEC---CCCCHHHHHhc
Confidence 344555667888999987774 44334555544
No 450
>PRK11269 glyoxylate carboligase; Provisional
Probab=21.77 E-value=6.8e+02 Score=23.55 Aligned_cols=65 Identities=8% Similarity=-0.093 Sum_probs=37.1
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC------hhHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT------LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~y~~ad~~~v~~s~ 146 (248)
++|+|.+-. -.+++.+++.++|++......+....+.++=++.+. ......++..||++++.++.
T Consensus 207 vil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~ 280 (591)
T PRK11269 207 LIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNR 280 (591)
T ss_pred EEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCC
Confidence 678887642 247888999999998654333221111122122221 12345678899998775543
No 451
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.53 E-value=2.8e+02 Score=19.03 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=41.9
Q ss_pred EEEecCCCCC---HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHH-
Q 043830 82 TIIVPRHPQH---GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISE- 157 (248)
Q Consensus 82 lvivG~~~~~---~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lE- 157 (248)
++++|.|... .+.+++.+++.|++..+ .- -+..++...+...|+++++|.+.. -..-++
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v-------------~~-~~~~~~~~~~~~~Diil~~Pqv~~---~~~~i~~ 65 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEI-------------EA-VPESELEEYIDDADVVLLGPQVRY---MLDEVKK 65 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEE-------------EE-ecHHHHHHhcCCCCEEEEChhHHH---HHHHHHH
Confidence 5666766432 25677778888876322 11 123567777888999888665431 112233
Q ss_pred -HHhhCCcEEEC
Q 043830 158 -AAAAGCAVLTG 168 (248)
Q Consensus 158 -A~a~G~Pvi~~ 168 (248)
+.-.++||..-
T Consensus 66 ~~~~~~~pv~~I 77 (96)
T cd05564 66 KAAEYGIPVAVI 77 (96)
T ss_pred HhccCCCcEEEc
Confidence 34578999974
No 452
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=21.48 E-value=7.9e+02 Score=24.25 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=58.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHH-h--hCCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLY-K--LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y-~--~ad~~~v~~s~~e~~gg~~~ 155 (248)
..+++|+.+++.....+...+...|.. +.......+....+ . ..|++++--.. +++.|..+
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~~g~~---------------v~~a~~~~~al~~~~~~~~~Dlvl~D~~m-p~~~G~~~ 744 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNTSGAQ---------------VVAVGNAAQALETLQNSEPFAAALVDFDL-PDYDGITL 744 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHhcCCc---------------eEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCCHHHH
Confidence 456778877665434566666665543 22223222333333 2 35887763222 33334444
Q ss_pred HHHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 156 SEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 156 lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++.+. -.+|+|+-............+.....|++..|-+.+.|...|..++.
T Consensus 745 ~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 745 ARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred HHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 44432 46788763221122222222222222466777899999999988874
No 453
>PRK13695 putative NTPase; Provisional
Probab=21.45 E-value=2.7e+02 Score=21.16 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc--CCHHHHHHHHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV--SGKSELEEALSQ 204 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~--~~~~~l~~~i~~ 204 (248)
+.+++..|.|+|++-+-....+.++.+.....|.++.+ .|.+.+...|..
T Consensus 119 l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 119 VEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILN 170 (174)
T ss_pred HHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHH
Confidence 34667889999975443233333444444444445443 688888777754
No 454
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=21.40 E-value=2.4e+02 Score=24.65 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=27.5
Q ss_pred HHHHHhhCCcEEECCCC-----C--------ChHHHHHHHHhcCCceEEEcCCHH
Q 043830 155 ISEAAAAGCAVLTGPHI-----G--------HYSNMVSAMQRLNPKSVLQVSGKS 196 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~-----~--------~~~~~~~~~~~~g~g~~~~~~~~~ 196 (248)
.++++..|+|||+.++. + --++.+.++.+.+.|+++.+-+.+
T Consensus 9 ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~ 63 (339)
T PRK09314 9 AIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKE 63 (339)
T ss_pred HHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHH
Confidence 58899999999986532 1 224566677777777666554443
No 455
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.39 E-value=1.9e+02 Score=17.00 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHH
Q 043830 195 KSELEEALSQLFSDARVLEAQQM 217 (248)
Q Consensus 195 ~~~l~~~i~~ll~~~~~~~~~~~ 217 (248)
.+++.+-+..+-+||++++++..
T Consensus 3 ~~~l~~Fl~~~~~d~~l~~~l~~ 25 (49)
T PF07862_consen 3 IESLKAFLEKVKSDPELREQLKA 25 (49)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHh
Confidence 45666667777789999888766
No 456
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=21.24 E-value=3.5e+02 Score=20.02 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=7.6
Q ss_pred HHHHHhhCCEEEE
Q 043830 130 LRQLYKLTPIAVI 142 (248)
Q Consensus 130 l~~~y~~ad~~~v 142 (248)
...+++.+|.++.
T Consensus 75 ~~~~~~~~~~ii~ 87 (173)
T cd04155 75 WRNYFENTDCLIY 87 (173)
T ss_pred HHHHhcCCCEEEE
Confidence 3456677885433
No 457
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.23 E-value=3e+02 Score=24.92 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=35.0
Q ss_pred hCCEEEEcCccCCCCCCCC---HHHH--HhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc-CCHHHHHHHHH
Q 043830 136 LTPIAVIGGSFLPGLAGHN---ISEA--AAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV-SGKSELEEALS 203 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~~---~lEA--~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~l~~~i~ 203 (248)
.+|+++.+|.|--|..|.- +-.+ --.|+|+|++-..+| ..++...+.- +.+.. ++.-.|-+++.
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy~EN--pgvd~yk~~v--yIv~t~~sa~gmr~al~ 145 (431)
T TIGR01917 76 NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMYEEN--PGADMFKKEV--YVIPTADSAAGMRKALP 145 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEecccC--hHHHHHhhCc--EEEECCCchhhHHHHHH
Confidence 4788888888754323442 2232 136999999765555 3455555432 33332 44444444443
No 458
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=21.22 E-value=2.6e+02 Score=23.83 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=30.2
Q ss_pred HHHHHh-h--CCcEEEC---------CCCCChHHHHHHHHhcC--CceEEEcCCHHHHHHHHHHh
Q 043830 155 ISEAAA-A--GCAVLTG---------PHIGHYSNMVSAMQRLN--PKSVLQVSGKSELEEALSQL 205 (248)
Q Consensus 155 ~lEA~a-~--G~Pvi~~---------~~~~~~~~~~~~~~~~g--~g~~~~~~~~~~l~~~i~~l 205 (248)
+++++. . ++|++++ ..+..+.++++.+.+.+ .++++.|..++.+...+.++
T Consensus 171 ~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~~p~~~~~~l~~~ 235 (304)
T PRK09485 171 LVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPELVTAAIAAL 235 (304)
T ss_pred HHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCCCHHHHHHHHHHH
Confidence 455555 4 7898872 12334555666554322 13556667888888777766
No 459
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.15 E-value=2.9e+02 Score=24.99 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=34.9
Q ss_pred hCCEEEEcCccCCCCCCCC---HHHH--HhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc-CCHHHHHHHHH
Q 043830 136 LTPIAVIGGSFLPGLAGHN---ISEA--AAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV-SGKSELEEALS 203 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~~---~lEA--~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~l~~~i~ 203 (248)
.+|+++.+|.|--|..|.- +-.+ --.|+|+|++-..+| ..++...+.- +.+.. ++.-.|-+++.
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~My~EN--pgvd~yk~~v--yIv~t~~sa~gmr~al~ 145 (431)
T TIGR01918 76 EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSMYVEN--PGVDMFKKDV--YVMITGDSAAGMRKDLP 145 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEecccC--hHHHHHhhCc--EEEECCcchhhHHHHHH
Confidence 4788888888754333442 2222 136999999765555 3455555432 33332 44444444443
No 460
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=21.08 E-value=3.9e+02 Score=20.52 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=32.9
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++...+ ++..|..+++.+. ...|+|+-....+.......+ +.|. +++..+-+.++|...+..++.
T Consensus 45 ~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~a~-~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 45 YALIILDIML-PGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGL-DSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred CCEEEEECCC-CCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHH-hcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 5665553322 2122333333332 256777632222222233323 3332 355556788888888877654
No 461
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.96 E-value=6.1e+02 Score=22.73 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEeccc--CCC---CCCccEEEEcChhHHHHHHhhCCE
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRH--EKL---MPRTNVYVVDTLGELRQLYKLTPI 139 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~---~~~~~v~~~~~~~~l~~~y~~ad~ 139 (248)
.+++++..........++.|+|+ +...-.+.+.+.++|+....-... ... ... ...+.+...++.+.....|+
T Consensus 286 ~~~~~~~d~~~~l~gkrvai~~~-~~~~~~l~~~L~ElG~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~e~~~~~~dl 363 (417)
T cd01966 286 QLQDAMLDGHFYLGGKRVAIALE-PDLLAALSSFLAEMGAEIVAAVATTDSPALEKLPA-EEVVVGDLEDLEDLAAEADL 363 (417)
T ss_pred HHHHHHHHHHHHhCCcEEEEEeC-HHHHHHHHHHHHHCCCEEEEEEECCCCHHHHhCcc-cceEeCCHHHHHHhcccCCE
Confidence 45666655544445677888875 444466777788999975432211 000 001 22334555567666677888
Q ss_pred EEEcCccCCCCCCCCHHHHHhhCCcEE
Q 043830 140 AVIGGSFLPGLAGHNISEAAAAGCAVL 166 (248)
Q Consensus 140 ~~v~~s~~e~~gg~~~lEA~a~G~Pvi 166 (248)
++++|... .=|.-.|+|.+
T Consensus 364 -lig~s~~~-------~~A~~~~ip~~ 382 (417)
T cd01966 364 -LVTNSHGR-------QAAERLGIPLL 382 (417)
T ss_pred -EEEcchhH-------HHHHhcCCCEE
Confidence 45555422 13455688887
No 462
>PRK10342 glycerate kinase I; Provisional
Probab=20.89 E-value=6.1e+02 Score=22.66 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=25.9
Q ss_pred HHHHHHhhCCEEEEcCccCC--CCCCCCH----HHHHhhCCcEEE
Q 043830 129 ELRQLYKLTPIAVIGGSFLP--GLAGHNI----SEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e--~~gg~~~----lEA~a~G~Pvi~ 167 (248)
.+.+.++.||+++.+-...+ .+.|.++ --|-.+|+|||+
T Consensus 277 ~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPvia 321 (381)
T PRK10342 277 NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIG 321 (381)
T ss_pred CHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEE
Confidence 57788999999887632222 2335554 346678999996
No 463
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.85 E-value=5.2e+02 Score=21.91 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=32.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEE
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVI 142 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v 142 (248)
+-+.+|+|++.--...+..++.+.+-. |.+... ..++..+.+.||++++
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~At---------------Vt~chs~T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNENAT---------------VTICHSKTKNLKEVCKKADILVV 207 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCE---------------EEEeCCCCCCHHHHHhhCCEEEE
Confidence 457889998776667777777665432 223221 2378899999999766
No 464
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=20.75 E-value=1.7e+02 Score=20.47 Aligned_cols=44 Identities=2% Similarity=0.014 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhCHH--HHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 043830 197 ELEEALSQLFSDAR--VLEAQQMAAKQAFCALSSGIVANVWNLLNF 240 (248)
Q Consensus 197 ~l~~~i~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (248)
.+-+.|...+.+.. ....+...-+.++..||+....++.+.|..
T Consensus 54 ~IG~~I~~~l~~~~~~~~~~l~~~LW~fvs~fwp~~~~kL~~mY~k 99 (100)
T PF13907_consen 54 KIGDFIDSILKEYKDDEPEKLRKHLWSFVSKFWPNKGKKLHKMYKK 99 (100)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 34445555554211 557788888999998887668888888875
No 465
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=20.60 E-value=8.4e+02 Score=24.21 Aligned_cols=111 Identities=8% Similarity=0.078 Sum_probs=56.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHH--hhCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLY--KLTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y--~~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++||-+.+.....+...+...|... .......+....+ ..-|++++-... ++..|..+++
T Consensus 703 ~~iLvvdd~~~~~~~l~~~L~~~g~~v---------------~~~~~~~~a~~~l~~~~~dlvl~D~~m-p~~~g~~~~~ 766 (968)
T TIGR02956 703 QRVLLVEDNEVNQMVAQGFLTRLGHKV---------------TLAESGQSALECFHQHAFDLALLDINL-PDGDGVTLLQ 766 (968)
T ss_pred cceEEEcCcHHHHHHHHHHHHHcCCEE---------------EEECCHHHHHHHHHCCCCCEEEECCCC-CCCCHHHHHH
Confidence 356666665544355666666666532 2222212222222 236887663332 3233444444
Q ss_pred HHhh---C---CcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAAA---G---CAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a~---G---~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+-. . +|||+-............+ ..| .+++..|-+.+.|...+..++.
T Consensus 767 ~ir~~~~~~~~~pii~lta~~~~~~~~~~~-~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 767 QLRAIYGAKNEVKFIAFSAHVFNEDVAQYL-AAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred HHHhCccccCCCeEEEEECCCCHHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 3332 2 7888632222222233333 333 2456667899999999998874
No 466
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=20.53 E-value=3.8e+02 Score=24.64 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=57.9
Q ss_pred CHHHHHHHHHhcCCceEEecccCCCCCCc-------cEEEEcChhHH-HHHHhhCCEEEEcCccCCCCCCCCHHHHHhhC
Q 043830 91 HGKEIAQKLQKEGEVVALRSRHEKLMPRT-------NVYVVDTLGEL-RQLYKLTPIAVIGGSFLPGLAGHNISEAAAAG 162 (248)
Q Consensus 91 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~-------~v~~~~~~~~l-~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G 162 (248)
...++.+.+++.|++.+. ++.....+. .++.--+..++ .++++.+|.+.+ |+.+++ |
T Consensus 205 nlr~V~~la~~~GIplhL--DgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~--slsKgl-----------g 269 (467)
T TIGR02617 205 NLKAVYEIAKKYDIPVVM--DSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAM--SAKKDA-----------M 269 (467)
T ss_pred HHHHHHHHHHHcCCcEEE--EhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEE--EcCCCC-----------C
Confidence 346777888999988543 221110000 11111233444 467899999766 555653 2
Q ss_pred Cc---EEECCCCCChHHHHHHHHh---cCCce----EEEcCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 043830 163 CA---VLTGPHIGHYSNMVSAMQR---LNPKS----VLQVSGKSELEEALSQLFSDARVLEAQQMA 218 (248)
Q Consensus 163 ~P---vi~~~~~~~~~~~~~~~~~---~g~g~----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 218 (248)
.| ++++++. .+-+..+.... --.|+ +....|.++|+..+.+.++...++.++.+-
T Consensus 270 ApvGg~Lag~d~-~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv 334 (467)
T TIGR02617 270 VPMGGLLCFKDD-SFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQV 334 (467)
T ss_pred CcccceEEecch-hHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 33 4455432 11111111100 00011 234478999999999888777776666553
No 467
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=20.31 E-value=3.8e+02 Score=23.32 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCC
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGE 104 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l 104 (248)
-+.++++.....++++++.++++|+ + +++++.+.+.++
T Consensus 15 p~~vl~aa~~a~~~~~~~~~iLvG~---~-~~I~~~l~~~~~ 52 (334)
T PRK05331 15 PEVVVPGALQALKEHPDLEIILVGD---E-EKIKPLLAKKPD 52 (334)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeC---H-HHHHHHHHhcCC
Confidence 3467777777666666788899987 2 567776666654
No 468
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=20.03 E-value=2.5e+02 Score=17.86 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCce
Q 043830 66 MLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVV 106 (248)
Q Consensus 66 ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~ 106 (248)
++++-+++.+-.+.-.+.|..+++.-...+.++++..|.+.
T Consensus 13 vl~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~ 53 (69)
T cd03420 13 ILKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTL 53 (69)
T ss_pred HHHHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEE
Confidence 44454455443344455566666665689999999998864
No 469
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=20.02 E-value=4.6e+02 Score=20.94 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCC
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHP 89 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~ 89 (248)
.+..++.+.++.++..+..+++.|..+
T Consensus 152 ~~~f~~Gl~em~~rl~P~~ilvyG~~~ 178 (200)
T PF14386_consen 152 KKLFLDGLREMLKRLRPKHILVYGGMP 178 (200)
T ss_pred HHHHHHHHHHHHhccCCCeEEEECCch
Confidence 467788888887777677888888543
No 470
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=20.01 E-value=5.7e+02 Score=21.97 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=33.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEEc
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v~ 143 (248)
.-+.+|+|++.--...+..++.+.+-. |.+... ..++.++.+.||++++.
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~~AT---------------Vtvchs~T~nl~~~~~~ADIvv~A 217 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKADAT---------------VTVVHSRTPDPESIVREADIVIAA 217 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCE---------------EEEeCCCCCCHHHHHhhCCEEEEc
Confidence 457889998776667777777655432 223221 23688999999997764
Done!