Query 043830
Match_columns 248
No_of_seqs 164 out of 1381
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xci_A KDO-transferase, 3-deox 100.0 1.1E-32 3.9E-37 240.8 20.6 213 1-237 161-373 (374)
2 3c48_A Predicted glycosyltrans 100.0 5.6E-27 1.9E-31 207.4 23.4 222 1-245 192-429 (438)
3 2iw1_A Lipopolysaccharide core 100.0 6E-27 2.1E-31 202.7 20.3 220 1-243 144-373 (374)
4 2jjm_A Glycosyl transferase, g 99.9 1.1E-26 3.8E-31 203.1 18.3 218 1-245 164-389 (394)
5 3oy2_A Glycosyltransferase B73 99.9 3.5E-26 1.2E-30 201.0 20.8 221 1-245 141-394 (413)
6 2r60_A Glycosyl transferase, g 99.9 3.7E-26 1.3E-30 205.9 21.0 224 1-245 198-463 (499)
7 2x6q_A Trehalose-synthase TRET 99.9 3.4E-25 1.2E-29 195.0 22.5 209 12-242 190-415 (416)
8 3okp_A GDP-mannose-dependent a 99.9 1.6E-25 5.5E-30 194.8 18.8 218 1-244 148-382 (394)
9 3fro_A GLGA glycogen synthase; 99.9 5.1E-25 1.7E-29 194.1 18.2 222 1-245 196-434 (439)
10 1rzu_A Glycogen synthase 1; gl 99.9 8.9E-24 3E-28 189.5 17.7 219 1-245 214-479 (485)
11 2qzs_A Glycogen synthase; glyc 99.9 1.9E-23 6.7E-28 187.3 18.4 218 1-244 212-479 (485)
12 2gek_A Phosphatidylinositol ma 99.9 3.1E-23 1.1E-27 181.2 17.7 211 1-245 168-387 (406)
13 3s28_A Sucrose synthase 1; gly 99.9 4.5E-23 1.5E-27 194.5 19.2 178 49-245 571-773 (816)
14 3qhp_A Type 1 capsular polysac 99.9 4.4E-23 1.5E-27 159.2 15.0 159 51-232 3-165 (166)
15 1vgv_A UDP-N-acetylglucosamine 99.9 1.9E-23 6.6E-28 181.6 8.5 210 1-241 149-372 (384)
16 3beo_A UDP-N-acetylglucosamine 99.9 5.5E-23 1.9E-27 178.1 10.5 209 1-243 158-374 (375)
17 2x0d_A WSAF; GT4 family, trans 99.9 1.3E-23 4.5E-28 185.6 6.7 200 1-243 202-411 (413)
18 2bfw_A GLGA glycogen synthase; 99.9 8.4E-22 2.9E-26 156.4 15.9 163 40-225 24-198 (200)
19 1v4v_A UDP-N-acetylglucosamine 99.9 8.1E-23 2.8E-27 177.4 9.0 208 1-244 154-367 (376)
20 3vue_A GBSS-I, granule-bound s 99.9 1.3E-21 4.4E-26 178.1 16.2 216 1-242 249-512 (536)
21 2vsy_A XCC0866; transferase, g 99.9 3E-21 1E-25 176.4 17.3 207 16-245 344-563 (568)
22 1uqt_A Alpha, alpha-trehalose- 99.9 2.8E-21 9.4E-26 173.6 15.4 209 15-241 218-454 (482)
23 2iuy_A Avigt4, glycosyltransfe 99.9 8.2E-21 2.8E-25 162.7 16.2 194 1-245 127-339 (342)
24 3ot5_A UDP-N-acetylglucosamine 99.8 6.1E-21 2.1E-25 168.0 11.8 208 1-243 177-393 (403)
25 3dzc_A UDP-N-acetylglucosamine 99.8 1.4E-20 4.9E-25 165.3 13.1 207 1-239 174-395 (396)
26 2f9f_A First mannosyl transfer 99.8 1.2E-20 4.1E-25 147.5 10.4 147 49-220 22-175 (177)
27 1f0k_A MURG, UDP-N-acetylgluco 99.8 1.4E-19 4.9E-24 156.0 14.5 165 49-240 182-356 (364)
28 3nb0_A Glycogen [starch] synth 99.8 4.6E-19 1.6E-23 161.9 16.2 116 129-247 511-639 (725)
29 3t5t_A Putative glycosyltransf 99.8 2.6E-18 8.7E-23 153.6 18.1 201 17-240 250-472 (496)
30 4hwg_A UDP-N-acetylglucosamine 99.8 2.1E-18 7.1E-23 150.9 10.1 210 1-244 154-376 (385)
31 2hy7_A Glucuronosyltransferase 99.7 1.2E-18 4E-23 153.5 7.7 178 1-241 186-379 (406)
32 3s2u_A UDP-N-acetylglucosamine 99.6 8.3E-15 2.9E-19 127.1 13.8 169 49-244 179-357 (365)
33 3otg_A CALG1; calicheamicin, T 99.6 3.5E-14 1.2E-18 124.3 14.2 165 49-244 241-409 (412)
34 3rhz_A GTF3, nucleotide sugar 99.5 2.2E-13 7.7E-18 116.9 16.1 180 1-234 141-329 (339)
35 2iyf_A OLED, oleandomycin glyc 99.5 2.2E-13 7.6E-18 120.0 12.6 113 120-242 284-398 (430)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.5 1.2E-13 4.1E-18 120.2 9.7 152 64-246 236-391 (391)
37 3ia7_A CALG4; glycosysltransfe 99.4 4.5E-12 1.5E-16 110.3 13.8 117 120-246 282-401 (402)
38 4fzr_A SSFS6; structural genom 99.4 1E-12 3.5E-17 114.7 9.7 141 63-238 253-395 (398)
39 3rsc_A CALG2; TDP, enediyne, s 99.3 2.4E-11 8.2E-16 106.4 15.0 114 120-243 298-413 (415)
40 2p6p_A Glycosyl transferase; X 99.3 2.8E-11 9.6E-16 104.9 13.6 113 120-243 265-379 (384)
41 3q3e_A HMW1C-like glycosyltran 99.3 3.7E-11 1.3E-15 109.4 13.7 169 58-243 449-625 (631)
42 2o6l_A UDP-glucuronosyltransfe 99.3 1.9E-10 6.6E-15 88.5 14.9 92 120-218 69-164 (170)
43 3oti_A CALG3; calicheamicin, T 99.2 3.2E-11 1.1E-15 105.2 10.5 142 65-242 251-396 (398)
44 2yjn_A ERYCIII, glycosyltransf 99.2 3.4E-11 1.2E-15 106.6 9.7 116 120-245 320-437 (441)
45 2iya_A OLEI, oleandomycin glyc 99.2 7.8E-10 2.7E-14 97.2 15.2 114 120-243 306-421 (424)
46 3h4t_A Glycosyltransferase GTF 98.9 3.1E-08 1.1E-12 86.6 16.1 113 120-244 269-383 (404)
47 1iir_A Glycosyltransferase GTF 98.9 3.4E-08 1.2E-12 86.6 14.4 114 120-244 286-401 (415)
48 1rrv_A Glycosyltransferase GTF 98.8 1.7E-07 5.7E-12 82.1 15.7 113 120-244 287-402 (416)
49 4amg_A Snogd; transferase, pol 98.6 9.5E-08 3.2E-12 82.8 9.2 110 120-241 289-398 (400)
50 4gyw_A UDP-N-acetylglucosamine 98.6 1.6E-06 5.3E-11 81.5 17.6 148 60-225 533-685 (723)
51 2pq6_A UDP-glucuronosyl/UDP-gl 98.3 0.00011 3.9E-09 65.5 20.0 116 120-242 354-477 (482)
52 2c1x_A UDP-glucose flavonoid 3 98.2 7.3E-05 2.5E-09 66.4 17.6 116 120-243 326-451 (456)
53 3hbm_A UDP-sugar hydrolase; PS 98.2 8E-06 2.7E-10 68.0 9.1 87 81-192 186-272 (282)
54 3hbf_A Flavonoid 3-O-glucosylt 98.0 0.00033 1.1E-08 62.1 17.3 114 120-240 328-450 (454)
55 2acv_A Triterpene UDP-glucosyl 98.0 0.00023 7.8E-09 63.3 16.2 115 121-242 334-461 (463)
56 3l7i_A Teichoic acid biosynthe 98.0 2.9E-05 9.9E-10 72.9 9.8 211 1-244 486-720 (729)
57 2jzc_A UDP-N-acetylglucosamine 97.8 3.6E-05 1.2E-09 61.7 6.9 77 120-205 115-196 (224)
58 2vch_A Hydroquinone glucosyltr 97.7 0.00098 3.3E-08 59.5 15.6 81 131-216 350-440 (480)
59 1l5w_A Maltodextrin phosphoryl 95.0 0.47 1.6E-05 44.6 13.7 183 49-243 525-732 (796)
60 2gj4_A Glycogen phosphorylase, 94.9 0.88 3E-05 42.9 15.2 142 49-198 549-707 (824)
61 1psw_A ADP-heptose LPS heptosy 94.4 0.19 6.4E-06 42.1 8.9 84 63-167 199-285 (348)
62 2c4m_A Glycogen phosphorylase; 94.3 0.5 1.7E-05 44.4 12.0 145 49-200 515-678 (796)
63 3jte_A Response regulator rece 94.0 0.57 2E-05 33.2 9.9 112 80-208 4-123 (143)
64 3tov_A Glycosyl transferase fa 93.9 0.24 8.1E-06 42.0 8.5 81 63-167 203-285 (349)
65 2zay_A Response regulator rece 93.9 0.63 2.2E-05 33.1 9.9 113 79-207 8-127 (147)
66 1qkk_A DCTD, C4-dicarboxylate 93.6 0.95 3.2E-05 32.6 10.5 114 80-210 4-123 (155)
67 3h1g_A Chemotaxis protein CHEY 93.1 1.4 4.9E-05 30.5 10.5 113 80-207 6-126 (129)
68 1k68_A Phytochrome response re 93.0 1.6 5.4E-05 30.4 10.6 113 80-207 3-130 (140)
69 3hzh_A Chemotaxis response reg 92.8 1.1 3.9E-05 32.4 9.9 69 137-207 84-156 (157)
70 3kht_A Response regulator; PSI 92.5 1.7 5.7E-05 30.7 10.3 114 79-207 5-127 (144)
71 2qzj_A Two-component response 92.2 0.8 2.7E-05 32.3 8.2 112 80-207 5-120 (136)
72 3gl9_A Response regulator; bet 92.1 2 6.7E-05 29.5 10.1 69 137-207 47-121 (122)
73 3kcn_A Adenylate cyclase homol 92.1 2.2 7.6E-05 30.4 10.7 114 80-211 5-126 (151)
74 3t6k_A Response regulator rece 91.7 2.5 8.4E-05 29.7 10.6 113 80-208 5-124 (136)
75 2rjn_A Response regulator rece 91.7 2.1 7.1E-05 30.7 10.1 115 79-210 7-128 (154)
76 2qsj_A DNA-binding response re 91.7 1.7 5.8E-05 31.1 9.6 114 79-208 3-124 (154)
77 1i3c_A Response regulator RCP1 91.6 2.7 9.1E-05 30.0 10.8 113 79-206 8-135 (149)
78 3heb_A Response regulator rece 91.6 2 6.9E-05 30.7 9.9 112 80-206 5-133 (152)
79 3gt7_A Sensor protein; structu 91.6 2.5 8.5E-05 30.4 10.4 113 79-207 7-126 (154)
80 1jbe_A Chemotaxis protein CHEY 91.5 2.4 8.1E-05 29.1 10.3 112 79-206 4-123 (128)
81 1dbw_A Transcriptional regulat 91.2 2.6 8.8E-05 28.9 10.2 111 80-207 4-120 (126)
82 3cnb_A DNA-binding response re 91.1 2.8 9.6E-05 29.2 10.2 113 79-207 8-129 (143)
83 3hv2_A Response regulator/HD d 91.0 2.5 8.6E-05 30.2 9.9 69 137-207 59-132 (153)
84 1k66_A Phytochrome response re 90.9 2.9 9.9E-05 29.4 10.1 114 79-207 6-137 (149)
85 2gt1_A Lipopolysaccharide hept 90.9 0.59 2E-05 38.8 7.0 80 63-167 196-277 (326)
86 2qxy_A Response regulator; reg 90.6 2.5 8.6E-05 29.6 9.5 114 80-210 5-123 (142)
87 3hdv_A Response regulator; PSI 90.5 2.9 0.0001 29.0 9.7 114 79-209 7-128 (136)
88 3hdg_A Uncharacterized protein 90.2 3.4 0.00012 28.7 10.2 113 79-207 7-124 (137)
89 2pln_A HP1043, response regula 90.1 3.4 0.00012 28.7 9.8 55 152-207 73-132 (137)
90 3cfy_A Putative LUXO repressor 90.0 3.7 0.00013 28.7 10.2 110 81-207 6-121 (137)
91 2r25_B Osmosensing histidine p 90.0 3.6 0.00012 28.6 10.2 69 137-207 53-126 (133)
92 3ilh_A Two component response 89.9 3.7 0.00013 28.7 10.3 116 79-209 9-140 (146)
93 1dcf_A ETR1 protein; beta-alph 89.8 2.3 7.9E-05 29.6 8.6 112 79-208 7-129 (136)
94 2qr3_A Two-component system re 89.7 2.6 8.9E-05 29.3 8.9 113 80-208 4-126 (140)
95 3eod_A Protein HNR; response r 89.4 3.8 0.00013 28.1 10.3 114 79-208 7-126 (130)
96 3rqi_A Response regulator prot 89.4 2.5 8.7E-05 31.5 9.0 113 80-208 8-125 (184)
97 3to5_A CHEY homolog; alpha(5)b 89.4 4.6 0.00016 28.9 10.2 114 78-207 11-132 (134)
98 1zgz_A Torcad operon transcrip 89.1 3.8 0.00013 27.7 10.2 110 81-206 4-117 (122)
99 4e7p_A Response regulator; DNA 88.7 5 0.00017 28.5 10.7 69 137-207 67-139 (150)
100 1p6q_A CHEY2; chemotaxis, sign 88.5 4.4 0.00015 27.7 9.8 113 80-207 7-126 (129)
101 3lua_A Response regulator rece 88.5 1.4 4.8E-05 31.0 6.7 114 80-209 5-128 (140)
102 3m6m_D Sensory/regulatory prot 88.3 4.5 0.00015 28.5 9.4 112 79-207 14-135 (143)
103 3crn_A Response regulator rece 88.0 5 0.00017 27.7 10.5 112 80-207 4-120 (132)
104 2pl1_A Transcriptional regulat 87.7 4.7 0.00016 27.1 10.3 109 81-206 2-116 (121)
105 1rcu_A Conserved hypothetical 87.6 0.25 8.6E-06 38.3 2.2 75 129-206 111-193 (195)
106 3cg0_A Response regulator rece 87.3 5.6 0.00019 27.5 10.5 114 79-207 9-127 (140)
107 1srr_A SPO0F, sporulation resp 87.3 5.2 0.00018 27.1 10.6 111 81-207 5-120 (124)
108 3f6p_A Transcriptional regulat 87.2 5.3 0.00018 27.1 9.9 70 137-207 47-118 (120)
109 2iz6_A Molybdenum cofactor car 86.9 0.93 3.2E-05 34.5 5.0 70 133-208 104-174 (176)
110 3eul_A Possible nitrate/nitrit 86.9 6.5 0.00022 27.8 10.4 70 137-208 62-135 (152)
111 1mb3_A Cell division response 86.8 4.6 0.00016 27.3 8.5 111 81-207 3-120 (124)
112 3r0j_A Possible two component 86.6 6 0.0002 31.0 10.0 69 137-207 68-140 (250)
113 2rdm_A Response regulator rece 86.2 3.6 0.00012 28.2 7.6 111 79-207 5-122 (132)
114 3cz5_A Two-component response 86.1 7.2 0.00025 27.6 11.2 112 79-207 5-124 (153)
115 3snk_A Response regulator CHEY 85.9 3.1 0.00011 28.9 7.2 69 137-207 60-132 (135)
116 3grc_A Sensor protein, kinase; 85.9 2.6 9.1E-05 29.4 6.9 112 80-207 7-126 (140)
117 1mvo_A PHOP response regulator 85.9 4.8 0.00016 27.8 8.2 112 80-208 4-121 (136)
118 2qvg_A Two component response 85.7 6.8 0.00023 27.2 9.1 110 80-204 8-131 (143)
119 3mm4_A Histidine kinase homolo 85.5 6.2 0.00021 30.0 9.3 114 79-210 61-198 (206)
120 4dad_A Putative pilus assembly 85.5 1.3 4.5E-05 31.4 5.0 45 162-207 95-140 (146)
121 2gkg_A Response regulator homo 85.5 2.4 8.1E-05 28.8 6.3 111 81-208 7-125 (127)
122 3c3m_A Response regulator rece 85.0 5.3 0.00018 27.8 8.1 111 80-208 4-123 (138)
123 3h5i_A Response regulator/sens 84.6 1.5 5.1E-05 30.9 5.0 111 80-207 6-123 (140)
124 2a9o_A Response regulator; ess 84.4 7.1 0.00024 26.0 10.6 71 136-207 45-117 (120)
125 1xhf_A DYE resistance, aerobic 84.3 7.4 0.00025 26.2 10.6 110 81-206 5-118 (123)
126 1s8n_A Putative antiterminator 83.0 11 0.00039 28.2 9.8 71 137-209 59-132 (205)
127 3i42_A Response regulator rece 82.6 5.9 0.0002 27.0 7.4 110 80-208 4-122 (127)
128 1tmy_A CHEY protein, TMY; chem 82.3 8.9 0.0003 25.6 9.4 68 137-206 48-119 (120)
129 4b4t_W RPN10, 26S proteasome r 82.2 4.7 0.00016 32.7 7.5 27 188-214 218-244 (268)
130 3kto_A Response regulator rece 81.9 3.3 0.00011 28.9 5.9 112 80-207 7-125 (136)
131 1p2f_A Response regulator; DRR 81.6 6.7 0.00023 29.9 8.0 111 80-207 3-116 (220)
132 1qo0_D AMIR; binding protein, 81.5 14 0.00048 27.4 10.4 111 79-209 12-126 (196)
133 3cg4_A Response regulator rece 81.3 1.7 5.9E-05 30.5 4.2 111 79-207 7-126 (142)
134 3f6c_A Positive transcription 81.3 6.9 0.00024 26.8 7.4 111 80-207 2-119 (134)
135 3nhm_A Response regulator; pro 80.9 6.9 0.00023 26.8 7.3 68 137-207 48-121 (133)
136 2gwr_A DNA-binding response re 80.1 10 0.00034 29.4 8.7 111 80-207 6-121 (238)
137 2hqr_A Putative transcriptiona 79.5 10 0.00036 28.8 8.6 108 81-208 2-115 (223)
138 2j48_A Two-component sensor ki 79.5 5.1 0.00018 26.5 6.1 107 81-207 3-117 (119)
139 1zh2_A KDP operon transcriptio 78.2 12 0.00042 24.8 8.6 69 137-206 46-116 (121)
140 3nv9_A Malic enzyme; rossmann 78.2 2.4 8.2E-05 37.2 4.6 88 65-167 205-324 (487)
141 3lte_A Response regulator; str 78.1 13 0.00046 25.2 9.8 112 80-208 7-125 (132)
142 2ayx_A Sensor kinase protein R 77.5 20 0.00067 28.2 9.8 111 79-207 129-246 (254)
143 1w25_A Stalked-cell differenti 77.3 34 0.0012 29.3 12.7 113 81-209 3-122 (459)
144 2jba_A Phosphate regulon trans 77.3 3.1 0.00011 28.4 4.4 69 137-207 47-121 (127)
145 3b2n_A Uncharacterized protein 76.6 16 0.00053 25.1 10.2 70 137-207 50-122 (133)
146 2oqr_A Sensory transduction pr 76.5 11 0.00039 28.7 8.0 113 80-208 5-121 (230)
147 1yio_A Response regulatory pro 76.5 17 0.0006 27.1 8.9 111 80-208 5-122 (208)
148 1kgs_A DRRD, DNA binding respo 76.1 11 0.00036 28.7 7.6 111 80-207 3-119 (225)
149 3n53_A Response regulator rece 75.6 8.8 0.0003 26.6 6.5 69 137-207 47-121 (140)
150 1ny5_A Transcriptional regulat 75.1 34 0.0011 29.0 11.1 115 81-211 2-121 (387)
151 3q9s_A DNA-binding response re 74.5 15 0.0005 28.8 8.2 46 162-207 108-153 (249)
152 2b4a_A BH3024; flavodoxin-like 73.7 3.9 0.00013 28.4 4.2 111 78-209 14-132 (138)
153 1vl6_A Malate oxidoreductase; 73.3 4.6 0.00016 34.7 5.0 88 76-167 189-291 (388)
154 1gq2_A Malic enzyme; oxidoredu 72.9 5 0.00017 36.0 5.3 102 65-167 268-392 (555)
155 1dz3_A Stage 0 sporulation pro 72.6 16 0.00054 24.8 7.2 69 137-207 49-122 (130)
156 1o0s_A NAD-ME, NAD-dependent m 72.6 4.6 0.00016 36.5 5.1 102 65-167 306-430 (605)
157 1ys7_A Transcriptional regulat 69.7 8.9 0.0003 29.4 5.8 110 80-207 8-124 (233)
158 4had_A Probable oxidoreductase 67.0 27 0.00091 28.9 8.6 87 76-185 45-137 (350)
159 3a10_A Response regulator; pho 65.9 22 0.00075 23.3 6.6 107 81-206 3-115 (116)
160 1a04_A Nitrate/nitrite respons 65.8 39 0.0013 25.2 9.6 69 137-207 52-124 (215)
161 3qua_A Putative uncharacterize 65.2 22 0.00074 27.4 6.9 80 120-202 100-196 (199)
162 3dzd_A Transcriptional regulat 64.8 62 0.0021 27.1 11.0 70 137-207 45-117 (368)
163 3cu5_A Two component transcrip 63.3 17 0.00058 25.2 5.8 70 137-207 50-122 (141)
164 1t35_A Hypothetical protein YV 62.2 8.9 0.0003 29.3 4.2 74 129-205 90-179 (191)
165 1vi6_A 30S ribosomal protein S 62.0 4.7 0.00016 31.4 2.6 90 63-167 53-143 (208)
166 2jk1_A HUPR, hydrogenase trans 60.9 37 0.0013 23.2 11.0 69 137-207 45-118 (139)
167 3j20_B 30S ribosomal protein S 60.7 7.1 0.00024 30.2 3.4 89 63-167 49-139 (202)
168 3c3w_A Two component transcrip 60.1 13 0.00044 28.5 5.0 69 137-207 48-120 (225)
169 1pj3_A NAD-dependent malic enz 59.6 11 0.00036 34.0 4.7 102 65-167 270-397 (564)
170 2a9f_A Putative malic enzyme ( 58.8 5.1 0.00017 34.5 2.5 98 66-167 175-286 (398)
171 2a33_A Hypothetical protein; s 58.5 12 0.0004 29.2 4.4 75 129-206 102-192 (215)
172 3luf_A Two-component system re 58.2 65 0.0022 25.2 11.4 113 78-207 123-244 (259)
173 1ydh_A AT5G11950; structural g 57.7 18 0.00062 28.2 5.4 83 121-206 89-188 (216)
174 3kyj_B CHEY6 protein, putative 57.5 44 0.0015 23.0 8.0 17 151-167 74-92 (145)
175 1vs1_A 3-deoxy-7-phosphoheptul 57.4 75 0.0026 25.7 9.8 119 49-186 37-173 (276)
176 2qv0_A Protein MRKE; structura 56.3 45 0.0015 22.8 9.4 111 79-207 9-126 (143)
177 2xzm_B RPS0E; ribosome, transl 55.0 4.9 0.00017 32.1 1.6 90 63-167 50-142 (241)
178 3sbx_A Putative uncharacterize 54.2 69 0.0024 24.3 12.3 79 121-202 92-187 (189)
179 4fb5_A Probable oxidoreductase 53.4 18 0.00061 30.2 5.1 77 67-167 44-123 (393)
180 3nvt_A 3-deoxy-D-arabino-heptu 53.1 1E+02 0.0035 26.2 9.7 119 49-186 141-277 (385)
181 2h1q_A Hypothetical protein; Z 52.4 14 0.00048 29.9 4.0 113 76-203 138-252 (270)
182 1dc7_A NTRC, nitrogen regulati 50.7 6.9 0.00024 26.2 1.7 109 81-206 5-119 (124)
183 3iz6_A 40S ribosomal protein S 50.6 11 0.00037 31.0 3.1 91 63-167 59-150 (305)
184 1zco_A 2-dehydro-3-deoxyphosph 49.4 99 0.0034 24.7 9.3 108 51-177 24-146 (262)
185 3u5c_A 40S ribosomal protein S 49.4 7.3 0.00025 31.2 1.8 91 63-167 54-145 (252)
186 2nzw_A Alpha1,3-fucosyltransfe 48.3 19 0.00066 30.6 4.4 80 129-216 224-308 (371)
187 3eq2_A Probable two-component 47.7 1.2E+02 0.0041 25.2 13.4 72 137-210 50-126 (394)
188 3inp_A D-ribulose-phosphate 3- 46.9 1.1E+02 0.0036 24.3 15.9 131 4-156 45-175 (246)
189 3npg_A Uncharacterized DUF364 46.3 37 0.0013 27.0 5.6 69 132-203 160-231 (249)
190 2zkq_b 40S ribosomal protein S 46.1 15 0.00053 30.1 3.3 91 63-167 55-146 (295)
191 3bch_A 40S ribosomal protein S 45.3 8.1 0.00028 31.0 1.5 90 64-167 89-179 (253)
192 3n0r_A Response regulator; sig 45.0 1.2E+02 0.004 24.3 9.5 122 67-207 149-276 (286)
193 1e2b_A Enzyme IIB-cellobiose; 43.6 65 0.0022 21.7 5.9 51 82-146 7-60 (106)
194 2lnd_A De novo designed protei 41.5 40 0.0014 21.7 4.1 17 191-207 84-100 (112)
195 3db2_A Putative NADPH-dependen 40.7 1.1E+02 0.0036 25.2 7.9 68 76-167 26-95 (354)
196 3c97_A Signal transduction his 40.6 50 0.0017 22.5 5.1 20 188-207 110-129 (140)
197 3v5n_A Oxidoreductase; structu 40.4 96 0.0033 26.3 7.8 69 77-167 62-139 (417)
198 4a26_A Putative C-1-tetrahydro 40.4 1.4E+02 0.0048 24.4 8.3 50 78-142 164-216 (300)
199 3geb_A EYES absent homolog 2; 40.1 30 0.001 27.8 4.0 36 68-107 218-254 (274)
200 3ecs_A Translation initiation 39.9 1.6E+02 0.0054 24.3 9.7 98 49-167 121-228 (315)
201 3ezy_A Dehydrogenase; structur 39.9 1.3E+02 0.0046 24.5 8.4 67 77-167 24-93 (344)
202 3bbn_B Ribosomal protein S2; s 39.6 69 0.0024 25.2 6.1 30 136-168 157-186 (231)
203 1vli_A Spore coat polysacchari 39.4 1.8E+02 0.0061 24.8 12.5 78 90-186 101-185 (385)
204 3ovp_A Ribulose-phosphate 3-ep 39.2 1.3E+02 0.0045 23.3 14.5 130 4-156 22-153 (228)
205 3cf4_G Acetyl-COA decarboxylas 39.1 31 0.001 25.5 3.9 14 132-145 103-116 (170)
206 1a4i_A Methylenetetrahydrofola 38.5 1E+02 0.0035 25.3 7.1 50 78-142 164-214 (301)
207 4f2g_A Otcase 1, ornithine car 38.1 1.7E+02 0.0057 24.0 10.9 93 47-142 120-222 (309)
208 3eqz_A Response regulator; str 38.0 38 0.0013 22.7 4.1 21 188-208 105-125 (135)
209 4hkt_A Inositol 2-dehydrogenas 37.8 1.4E+02 0.0048 24.2 8.2 66 77-167 25-92 (331)
210 1b0a_A Protein (fold bifunctio 37.0 1.2E+02 0.0042 24.6 7.4 50 78-142 158-208 (288)
211 3dty_A Oxidoreductase, GFO/IDH 36.2 83 0.0028 26.5 6.7 69 78-167 38-114 (398)
212 3s2u_A UDP-N-acetylglucosamine 36.1 1.2E+02 0.0042 25.0 7.7 29 136-167 92-120 (365)
213 3p2o_A Bifunctional protein fo 35.9 1.4E+02 0.0049 24.1 7.6 51 78-143 159-210 (285)
214 2yv2_A Succinyl-COA synthetase 35.6 39 0.0013 27.6 4.3 18 189-206 278-295 (297)
215 3bq9_A Predicted rossmann fold 35.6 42 0.0014 29.3 4.6 83 122-207 230-331 (460)
216 1p9l_A Dihydrodipicolinate red 35.3 1.6E+02 0.0055 23.1 7.9 32 136-170 45-77 (245)
217 4fyk_A Deoxyribonucleoside 5'- 34.9 22 0.00074 26.1 2.3 72 131-207 63-141 (152)
218 3l07_A Bifunctional protein fo 34.9 1.6E+02 0.0056 23.8 7.8 49 79-142 161-210 (285)
219 3klo_A Transcriptional regulat 34.9 45 0.0016 25.2 4.4 68 137-207 55-128 (225)
220 2a6q_A Antitoxin YEFM; YEFM, a 34.5 90 0.0031 19.9 5.9 52 155-219 19-71 (86)
221 3u3x_A Oxidoreductase; structu 34.0 2E+02 0.0068 23.7 8.6 67 78-167 49-117 (361)
222 1oi7_A Succinyl-COA synthetase 33.8 62 0.0021 26.2 5.2 18 189-206 270-287 (288)
223 3evn_A Oxidoreductase, GFO/IDH 33.7 89 0.003 25.4 6.3 37 129-167 58-96 (329)
224 2nu8_A Succinyl-COA ligase [AD 33.1 72 0.0025 25.8 5.5 24 180-206 264-287 (288)
225 2wqp_A Polysialic acid capsule 32.9 2.2E+02 0.0074 23.8 11.2 119 51-186 20-175 (349)
226 2hqs_H Peptidoglycan-associate 32.8 21 0.00073 24.6 2.0 23 2-24 64-86 (118)
227 2ef0_A Ornithine carbamoyltran 32.6 2E+02 0.007 23.4 10.4 93 47-142 120-219 (301)
228 4a5o_A Bifunctional protein fo 32.6 1.7E+02 0.0059 23.7 7.6 49 79-142 161-210 (286)
229 3q2i_A Dehydrogenase; rossmann 31.8 1.7E+02 0.0058 23.9 7.8 67 78-168 37-105 (354)
230 1hym_A CMTI-V, hydrolyzed cucu 31.5 54 0.0018 18.6 3.1 23 67-89 19-41 (45)
231 1zh8_A Oxidoreductase; TM0312, 31.2 1.8E+02 0.0062 23.7 7.9 67 78-167 43-111 (340)
232 2c2x_A Methylenetetrahydrofola 31.1 1.8E+02 0.006 23.6 7.4 53 78-143 157-210 (281)
233 3rc1_A Sugar 3-ketoreductase; 30.8 1.5E+02 0.0051 24.4 7.2 66 77-167 50-118 (350)
234 2ho3_A Oxidoreductase, GFO/IDH 30.7 2.1E+02 0.0072 23.0 8.6 38 129-168 54-92 (325)
235 2k7r_A Primosomal protein DNAI 30.6 44 0.0015 22.6 3.2 48 197-248 20-67 (106)
236 3ehd_A Uncharacterized conserv 30.1 1.1E+02 0.0038 22.5 5.6 34 132-167 65-102 (162)
237 3ngx_A Bifunctional protein fo 29.8 2.2E+02 0.0075 22.9 8.3 51 78-143 149-200 (276)
238 3g8r_A Probable spore coat pol 28.6 2.3E+02 0.0078 23.7 7.8 77 93-186 81-162 (350)
239 1wek_A Hypothetical protein TT 28.3 21 0.00073 27.8 1.4 78 124-205 118-213 (217)
240 2aiz_P Outer membrane protein 28.3 28 0.00096 24.7 2.0 23 2-24 88-110 (134)
241 3uuw_A Putative oxidoreductase 28.0 1.4E+02 0.0047 23.9 6.5 68 76-168 28-96 (308)
242 3tpf_A Otcase, ornithine carba 27.2 2.6E+02 0.0088 22.9 10.0 92 47-142 111-220 (307)
243 1vr6_A Phospho-2-dehydro-3-deo 26.9 2.4E+02 0.0084 23.5 7.8 107 61-186 117-241 (350)
244 2pjw_V Vacuolar protein sortin 25.3 1.5E+02 0.0051 19.5 6.8 68 177-246 17-85 (91)
245 4h3v_A Oxidoreductase domain p 25.2 54 0.0018 27.1 3.5 65 80-167 38-104 (390)
246 3ldt_A Outer membrane protein, 25.0 54 0.0018 24.2 3.1 23 2-24 112-134 (169)
247 2lpm_A Two-component response 25.0 29 0.00099 24.2 1.5 111 79-207 8-121 (123)
248 3nbm_A PTS system, lactose-spe 24.9 64 0.0022 21.9 3.2 74 79-169 6-85 (108)
249 4f3y_A DHPR, dihydrodipicolina 24.3 1.1E+02 0.0036 24.6 5.0 40 129-170 66-105 (272)
250 3cyp_B Chemotaxis protein MOTB 24.3 37 0.0012 24.1 2.0 23 2-24 67-89 (138)
251 3l5o_A Uncharacterized protein 24.0 16 0.00056 29.5 0.0 72 129-203 179-252 (270)
252 1fy2_A Aspartyl dipeptidase; s 23.8 1.6E+02 0.0053 22.8 5.8 85 65-167 19-118 (229)
253 3oqb_A Oxidoreductase; structu 23.7 3.1E+02 0.011 22.6 8.4 37 129-167 74-112 (383)
254 3ec7_A Putative dehydrogenase; 23.5 1.7E+02 0.0057 24.1 6.3 69 76-167 45-116 (357)
255 3moi_A Probable dehydrogenase; 23.4 1.4E+02 0.005 24.8 5.9 68 76-167 24-93 (387)
256 2kpo_A Rossmann 2X2 fold prote 23.3 1.4E+02 0.0047 19.2 4.2 41 66-106 38-78 (110)
257 3dfz_A SIRC, precorrin-2 dehyd 23.1 1.9E+02 0.0064 22.4 6.0 93 49-170 31-123 (223)
258 2kgw_A Outer membrane protein 23.0 35 0.0012 23.8 1.6 23 2-24 82-104 (129)
259 1l7b_A DNA ligase; BRCT, autos 22.9 1E+02 0.0034 20.2 3.8 62 78-167 9-70 (92)
260 3mz0_A Inositol 2-dehydrogenas 22.9 3E+02 0.01 22.2 8.8 70 76-167 24-95 (344)
261 1r1m_A Outer membrane protein 22.8 40 0.0014 24.9 2.0 23 2-24 73-95 (164)
262 3uqz_A DNA processing protein 22.6 3.1E+02 0.011 22.2 9.9 66 132-201 211-279 (288)
263 3maj_A DNA processing chain A; 22.1 1.7E+02 0.0059 24.8 6.0 70 133-206 233-305 (382)
264 3s06_A Motility protein B; pep 22.0 42 0.0014 24.6 2.0 23 2-24 95-117 (166)
265 2ixa_A Alpha-N-acetylgalactosa 22.0 1.3E+02 0.0044 25.7 5.4 37 129-167 82-120 (444)
266 1tqx_A D-ribulose-5-phosphate 21.5 2.8E+02 0.0097 21.4 14.0 155 6-186 25-195 (227)
267 4erh_A Outer membrane protein 21.3 41 0.0014 24.1 1.7 23 2-24 82-104 (148)
268 1edz_A 5,10-methylenetetrahydr 21.2 3.5E+02 0.012 22.2 8.8 65 78-142 176-251 (320)
269 3szu_A ISPH, 4-hydroxy-3-methy 21.0 2.3E+02 0.0078 23.5 6.3 18 122-139 255-273 (328)
270 3g5o_A Uncharacterized protein 20.7 1.1E+02 0.0037 20.8 3.7 55 155-222 23-78 (108)
271 2khz_A C-MYC-responsive protei 20.7 45 0.0015 24.5 1.9 73 131-207 72-150 (165)
272 3gh1_A Predicted nucleotide-bi 20.7 80 0.0028 27.5 3.6 82 122-206 232-332 (462)
273 2vbi_A Pyruvate decarboxylase; 20.5 3.5E+02 0.012 23.9 8.0 64 82-145 213-285 (566)
274 3s0y_A Motility protein B; pep 20.4 59 0.002 24.5 2.6 23 2-24 122-144 (193)
275 2vxb_A DNA repair protein RHP9 20.3 2.4E+02 0.0082 21.9 6.2 27 78-104 4-33 (241)
276 3e9m_A Oxidoreductase, GFO/IDH 20.3 3.4E+02 0.012 21.8 9.3 68 77-167 27-96 (330)
No 1
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=100.00 E-value=1.1e-32 Score=240.78 Aligned_cols=213 Identities=23% Similarity=0.366 Sum_probs=176.7
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCCcchHHHHHHHHHHHHHhCCCe
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNL 80 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~ 80 (248)
|+.+++.+.++|++ ||.|+||++|+....+. . .+ ..++++++++++|+++.+++|++.+.+++|++
T Consensus 161 S~~~~~~l~~~g~~--ki~vi~n~~f~~~~~~~-------~----~l-~~~vi~~~~~~~k~~~~ll~A~~~l~~~~p~~ 226 (374)
T 2xci_A 161 TQEDVEKFKTFGAK--RVFSCGNLKFICQKGKG-------I----KL-KGEFIVAGSIHTGEVEIILKAFKEIKKTYSSL 226 (374)
T ss_dssp CHHHHHHHHTTTCC--SEEECCCGGGCCCCCSC-------C----CC-SSCEEEEEEECGGGHHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHcCCC--eEEEcCCCccCCCcChh-------h----hh-cCCEEEEEeCCCchHHHHHHHHHHHHhhCCCc
Confidence 67889999999997 89999998776532110 0 11 12677787788888899999999998888999
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHh
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAA 160 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a 160 (248)
+|+|+|+|+++.++++++++++|+....++.+. .+|++.|+.++++.+|+.||++|+++|+.|+ ||++++||||
T Consensus 227 ~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~-----~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~-gg~~~lEAmA 300 (374)
T 2xci_A 227 KLILVPRHIENAKIFEKKARDFGFKTSFFENLE-----GDVILVDRFGILKELYPVGKIAIVGGTFVNI-GGHNLLEPTC 300 (374)
T ss_dssp EEEEEESSGGGHHHHHHHHHHTTCCEEETTCCC-----SSEEECCSSSCHHHHGGGEEEEEECSSSSSS-CCCCCHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCceEEecCCC-----CcEEEECCHHHHHHHHHhCCEEEECCcccCC-CCcCHHHHHH
Confidence 999999999875689999999998755444321 3688888889999999999998888888775 5899999999
Q ss_pred hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 043830 161 AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNL 237 (248)
Q Consensus 161 ~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (248)
||+|||+|++.++++++++.+.++| +++.++|+++|+++|.++++| +++++|+++|++++.+ ..++++++++.
T Consensus 301 ~G~PVI~~~~~~~~~e~~~~~~~~G--~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~-~~ga~~~~~~~ 373 (374)
T 2xci_A 301 WGIPVIYGPYTHKVNDLKEFLEKEG--AGFEVKNETELVTKLTELLSV-KKEIKVEEKSREIKGC-YLEKLREFLRG 373 (374)
T ss_dssp TTCCEEECSCCTTSHHHHHHHHHTT--CEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred hCCCEEECCCccChHHHHHHHHHCC--CEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh-cccHHHHHHhh
Confidence 9999999888889999887765555 788899999999999999999 9999999999999876 56778887764
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.96 E-value=5.6e-27 Score=207.42 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=172.9
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+..++.+.+ +|++++|+.+++|+ +|... .+. .......+|++++ +++++++.|+. .|+++.+++|+..+
T Consensus 192 s~~~~~~~~~~~g~~~~k~~vi~ng-vd~~~~~~~--~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l 268 (438)
T 3c48_A 192 TQEEMQDLMHHYDADPDRISVVSPG-ADVELYSPG--NDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAAL 268 (438)
T ss_dssp SHHHHHHHHHHHCCCGGGEEECCCC-CCTTTSCCC------CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCChhheEEecCC-ccccccCCc--ccchhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHH
Confidence 6778888876 79999999999986 44432 221 1112234666664 56677776653 47789999999999
Q ss_pred HHhCC--CeEEEEecC----CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCc
Q 043830 74 MQKNP--NLVTIIVPR----HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 74 ~~~~~--~~~lvivG~----~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s 145 (248)
.++.| +++|+|+|+ ++.. ++++++++++++.. +|.+.+.. .++..+|+.||++ +.+|
T Consensus 269 ~~~~p~~~~~l~i~G~~~~~g~~~-~~l~~~~~~~~l~~-------------~v~~~g~~~~~~~~~~~~~adv~-v~ps 333 (438)
T 3c48_A 269 FDRDPDRNLRVIICGGPSGPNATP-DTYRHMAEELGVEK-------------RIRFLDPRPPSELVAVYRAADIV-AVPS 333 (438)
T ss_dssp HHHCTTCSEEEEEECCBC-------CHHHHHHHHTTCTT-------------TEEEECCCCHHHHHHHHHHCSEE-EECC
T ss_pred HhhCCCcceEEEEEeCCCCCCcHH-HHHHHHHHHcCCCC-------------cEEEcCCCChHHHHHHHHhCCEE-EECc
Confidence 88877 899999998 6554 78999999988753 56677755 7899999999995 5688
Q ss_pred cCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 043830 146 FLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 146 ~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 225 (248)
..|++ |++++|||+||+|||+++. ++.++.+ .+..+|+++.+.|+++|+++|.++++|++.+++|++++++++.+
T Consensus 334 ~~e~~-~~~~~Eama~G~PvI~~~~-~~~~e~i---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 408 (438)
T 3c48_A 334 FNESF-GLVAMEAQASGTPVIAARV-GGLPIAV---AEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHART 408 (438)
T ss_dssp SCCSS-CHHHHHHHHTTCCEEEESC-TTHHHHS---CBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cccCC-chHHHHHHHcCCCEEecCC-CChhHHh---hCCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 88986 8999999999999999864 4555443 33445677777899999999999999999999999999999988
Q ss_pred h-chhHHHHHHHHHHHHhhhh
Q 043830 226 L-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 226 ~-~~~~~~~~l~~~~~~~~~~ 245 (248)
+ |+..+++++++|++++..+
T Consensus 409 ~s~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3c48_A 409 FSWAATAAQLSSLYNDAIANE 429 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHhhhc
Confidence 8 8999999999999998765
No 3
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.95 E-value=6e-27 Score=202.66 Aligned_cols=220 Identities=14% Similarity=0.117 Sum_probs=171.0
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+..++.+.+ +|++.+++.+++|+ +|... .+. ..+.....++++++ +++++++.|+. .|+.+.+++|+..+
T Consensus 144 s~~~~~~~~~~~~~~~~~~~vi~ng-v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l 221 (374)
T 2iw1_A 144 TDKQIADFQKHYQTEPERFQILPPG-IYPDRKYSE-QIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASL 221 (374)
T ss_dssp CHHHHHHHHHHHCCCGGGEEECCCC-CCGGGSGGG-SCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhCCChhheEEecCC-cCHHhcCcc-cchhHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHHHHHHh
Confidence 6778888876 69999999999985 44432 211 11123456777765 45677766543 47889999999988
Q ss_pred HHh-CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCC
Q 043830 74 MQK-NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAG 152 (248)
Q Consensus 74 ~~~-~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg 152 (248)
.+. .++++|+|+|+++. ++++++++++++.. +|.+.++.+++..+|+.||++ +.||..|++ |
T Consensus 222 ~~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~ad~~-v~ps~~e~~-~ 284 (374)
T 2iw1_A 222 PESLRHNTLLFVVGQDKP--RKFEALAEKLGVRS-------------NVHFFSGRNDVSELMAAADLL-LHPAYQEAA-G 284 (374)
T ss_dssp CHHHHHTEEEEEESSSCC--HHHHHHHHHHTCGG-------------GEEEESCCSCHHHHHHHCSEE-EECCSCCSS-C
T ss_pred HhccCCceEEEEEcCCCH--HHHHHHHHHcCCCC-------------cEEECCCcccHHHHHHhcCEE-EeccccCCc-c
Confidence 765 57899999999763 78999999888753 567777777999999999995 568888985 8
Q ss_pred CCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEE-cCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhH
Q 043830 153 HNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQ-VSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGI 230 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~ 230 (248)
++++|||+||+|||+++.+ +..+.+. +.++|+++. +.|+++|+++|.++++|++.+++|++++++++.++ |...
T Consensus 285 ~~~~Ea~a~G~Pvi~~~~~-~~~e~i~---~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (374)
T 2iw1_A 285 IVLLEAITAGLPVLTTAVC-GYAHYIA---DANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSL 360 (374)
T ss_dssp HHHHHHHHHTCCEEEETTS-TTTHHHH---HHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCH
T ss_pred cHHHHHHHCCCCEEEecCC-Cchhhhc---cCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999998654 5555443 345567776 67999999999999999999999999999999887 7888
Q ss_pred HHHHHHHHHHHhh
Q 043830 231 VANVWNLLNFHVF 243 (248)
Q Consensus 231 ~~~~l~~~~~~~~ 243 (248)
.+++.+.++.++.
T Consensus 361 ~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 361 PEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHHhhc
Confidence 8888888887664
No 4
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.95 E-value=1.1e-26 Score=203.06 Aligned_cols=218 Identities=12% Similarity=0.075 Sum_probs=167.3
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+.+++.+.+.+..++++.+++|+ +|... .+ .....++++++ +.+++++.|+. .|+++.+++|+..+.
T Consensus 164 s~~~~~~~~~~~~~~~~~~vi~ng-v~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~ 237 (394)
T 2jjm_A 164 SHSLINETHELVKPNKDIQTVYNF-IDERVYFK-----RDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIV 237 (394)
T ss_dssp CHHHHHHHHHHTCCSSCEEECCCC-CCTTTCCC-----CCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCcccEEEecCC-ccHHhcCC-----cchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHH
Confidence 677888888765557899999986 44432 21 12245666654 45566666553 478899999999987
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
++ ++++|+|+|+++.. ++++++++++++.. +|.+.++..++..+|+.||++ +.||..|++ |++
T Consensus 238 ~~-~~~~l~i~G~g~~~-~~l~~~~~~~~l~~-------------~v~~~g~~~~~~~~~~~adv~-v~ps~~e~~-~~~ 300 (394)
T 2jjm_A 238 TE-VDAKLLLVGDGPEF-CTILQLVKNLHIED-------------RVLFLGKQDNVAELLAMSDLM-LLLSEKESF-GLV 300 (394)
T ss_dssp HS-SCCEEEEECCCTTH-HHHHHHHHTTTCGG-------------GBCCCBSCSCTHHHHHTCSEE-EECCSCCSC-CHH
T ss_pred hh-CCCEEEEECCchHH-HHHHHHHHHcCCCC-------------eEEEeCchhhHHHHHHhCCEE-EeccccCCC-chH
Confidence 66 67999999998865 88999999988864 344445556899999999995 567888985 899
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HHh-chhHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAF-CAL-SSGIVA 232 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 232 (248)
++|||+||+|||+++.+ +.++.+ .+...|+++.++|+++|+++|.++++|++.+++|++++++++ ..+ |+..++
T Consensus 301 ~~EAma~G~PvI~~~~~-~~~e~v---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 376 (394)
T 2jjm_A 301 LLEAMACGVPCIGTRVG-GIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVS 376 (394)
T ss_dssp HHHHHHTTCCEEEECCT-TSTTTC---CBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhcCCCEEEecCC-ChHHHh---hcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999998653 554433 233456778888999999999999999999999999999998 556 799999
Q ss_pred HHHHHHHHHhhhh
Q 043830 233 NVWNLLNFHVFRR 245 (248)
Q Consensus 233 ~~l~~~~~~~~~~ 245 (248)
+++++|++++.++
T Consensus 377 ~~~~~~~~~~~~~ 389 (394)
T 2jjm_A 377 QYETIYYDVLRDD 389 (394)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988765
No 5
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.95 E-value=3.5e-26 Score=200.97 Aligned_cols=221 Identities=11% Similarity=0.064 Sum_probs=168.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC-----CCeEEEEeCCC--cchHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA-----HRQVWMASSIH--RGEEKVMLAVHKVL 73 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~-----~~~v~l~~~~~--~~~~~~ll~a~~~l 73 (248)
|+.+++.+.++|+ +.++.+++|+ +|.... ...++.++ +.+++++.|+. .|+++.+++|+..+
T Consensus 141 S~~~~~~~~~~~~-~~~~~vi~ng-vd~~~~---------~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l 209 (413)
T 3oy2_A 141 SKCWISDICNYGC-KVPINIVSHF-VDTKTI---------YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARF 209 (413)
T ss_dssp STHHHHHHHHTTC-CSCEEECCCC-CCCCCC---------TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC-CCceEEeCCC-CCHHHH---------HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHH
Confidence 6778899988888 6889999986 344321 22333443 45677776654 47899999999999
Q ss_pred HHhCCCeEEEEecCCCCC-----HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCcc
Q 043830 74 MQKNPNLVTIIVPRHPQH-----GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 74 ~~~~~~~~lvivG~~~~~-----~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~ 146 (248)
.++.|+++|+|+|+++.. .+.++++++++|+...+.+.+ ..|++.+. .+++..+|+.||++ +.||.
T Consensus 210 ~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~------~vv~~~g~~~~~~~~~~~~~adv~-v~pS~ 282 (413)
T 3oy2_A 210 ISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLN------KIMINRTVLTDERVDMMYNACDVI-VNCSS 282 (413)
T ss_dssp HHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHT------TEEEECSCCCHHHHHHHHHHCSEE-EECCS
T ss_pred HHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCccccccccc------ceeeccCcCCHHHHHHHHHhCCEE-EeCCC
Confidence 989999999999988653 267888888899875311110 01445554 35899999999995 56888
Q ss_pred CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCC---------------ce--EEEcCCHHHHHHHHHHhhhCH
Q 043830 147 LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNP---------------KS--VLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 147 ~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~---------------g~--~~~~~~~~~l~~~i~~ll~~~ 209 (248)
.|+| |++++|||+||+|||+++.+ +.++++. +..+ |+ ++.+.|+++|+++| ++++|+
T Consensus 283 ~E~~-~~~~lEAma~G~PvI~s~~~-g~~e~v~---~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~ 356 (413)
T 3oy2_A 283 GEGF-GLCSAEGAVLGKPLIISAVG-GADDYFS---GDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDE 356 (413)
T ss_dssp CCSS-CHHHHHHHTTTCCEEEECCH-HHHHHSC---TTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSH
T ss_pred cCCC-CcHHHHHHHcCCCEEEcCCC-ChHHHHc---cCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCH
Confidence 8986 99999999999999997543 4444332 2222 57 88889999999999 999999
Q ss_pred HHHHHHHHHHHHHHH-Hh-chhHHHHHHHHHHHHhhhh
Q 043830 210 RVLEAQQMAAKQAFC-AL-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 210 ~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~ 245 (248)
+.+++|++++++++. .+ |+..++++.++|++++.++
T Consensus 357 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 357 KNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999985 45 8999999999999998765
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.95 E-value=3.7e-26 Score=205.91 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=170.9
Q ss_pred CHHHHHHHHHc---C-C----CCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC--------CCeEEEEeCCC--cc
Q 043830 1 STLQAIRFQLL---E-A----SPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA--------HRQVWMASSIH--RG 61 (248)
Q Consensus 1 s~~~~~~l~~~---g-v----~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~--------~~~v~l~~~~~--~~ 61 (248)
|+.+++.+.+. | + +++|+.|++|+ +|... .+.. ....+..+|++++ +.+++++.|+. .|
T Consensus 198 S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ng-vd~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~K 275 (499)
T 2r60_A 198 TSQERFGQYSHDLYRGAVNVEDDDKFSVIPPG-VNTRVFDGEY-GDKIKAKITKYLERDLGSERMELPAIIASSRLDQKK 275 (499)
T ss_dssp SHHHHHHTTTSGGGTTTCCTTCGGGEEECCCC-BCTTTSSSCC-CHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGG
T ss_pred CHHHHHHHHhhhcccccccccCCCCeEEECCC-cChhhcCccc-hhhhHHHHHHHhcccccccCCCCcEEEEeecCcccc
Confidence 56777777664 7 7 78899999986 45432 2211 1112345555543 56777776654 47
Q ss_pred hHHHHHHHHHHHHHhCCC-eEEEEecC--CC----CC--------HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC
Q 043830 62 EEKVMLAVHKVLMQKNPN-LVTIIVPR--HP----QH--------GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT 126 (248)
Q Consensus 62 ~~~~ll~a~~~l~~~~~~-~~lvivG~--~~----~~--------~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~ 126 (248)
+++.+++|+..+.+..|+ ++++|+|+ ++ .. .++++++++++|+.. +|.|.|.
T Consensus 276 g~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~-------------~V~~~G~ 342 (499)
T 2r60_A 276 NHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRG-------------KVSMFPL 342 (499)
T ss_dssp CHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBT-------------TEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCc-------------eEEECCC
Confidence 889999999998766554 58999998 33 11 478999999998863 5666665
Q ss_pred h--hHHHHHHhhC----CEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHH
Q 043830 127 L--GELRQLYKLT----PIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEE 200 (248)
Q Consensus 127 ~--~~l~~~y~~a----d~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~ 200 (248)
. .++..+|+.| |++ +.||..||| |++++||||||+|||+++. ++.++++ .+..+|+++.+.|+++|++
T Consensus 343 v~~~~~~~~~~~a~~~~dv~-v~pS~~Eg~-~~~~lEAma~G~PvI~s~~-~g~~e~v---~~~~~g~l~~~~d~~~la~ 416 (499)
T 2r60_A 343 NSQQELAGCYAYLASKGSVF-ALTSFYEPF-GLAPVEAMASGLPAVVTRN-GGPAEIL---DGGKYGVLVDPEDPEDIAR 416 (499)
T ss_dssp CSHHHHHHHHHHHHHTTCEE-EECCSCBCC-CSHHHHHHHTTCCEEEESS-BHHHHHT---GGGTSSEEECTTCHHHHHH
T ss_pred CCHHHHHHHHHhcCcCCCEE-EECcccCCC-CcHHHHHHHcCCCEEEecC-CCHHHHh---cCCceEEEeCCCCHHHHHH
Confidence 3 7999999999 994 568888986 9999999999999999864 3454433 3444568888899999999
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHhhhh
Q 043830 201 ALSQLFSDARVLEAQQMAAKQAFCA-L-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 201 ~i~~ll~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~ 245 (248)
+|.++++|++.+++|++++++++.+ + |+..+++++++|++++..+
T Consensus 417 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 417 GLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999977 6 8999999999999988765
No 7
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.94 E-value=3.4e-25 Score=194.97 Aligned_cols=209 Identities=14% Similarity=0.083 Sum_probs=157.1
Q ss_pred CCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEe
Q 043830 12 EASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIV 85 (248)
Q Consensus 12 gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lviv 85 (248)
+++.+++.+++|+ +|... .+.+..+.....++++++ +++++++.|+. .|+++.+++|+..+.++.|+++|+|+
T Consensus 190 ~~~~~~~~vi~ng-vd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~ 268 (416)
T 2x6q_A 190 ELDRNKAVIMPPS-IDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLV 268 (416)
T ss_dssp TSCTTTEEECCCC-BCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hCCccceEEeCCC-CChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4556789999986 44432 111112234556777765 56677776653 47889999999999988899999999
Q ss_pred cCCCCC----HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh-----hHHHHHHhhCCEEEEcCccCCCCCCCCHH
Q 043830 86 PRHPQH----GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL-----GELRQLYKLTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 86 G~~~~~----~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~-----~~l~~~y~~ad~~~v~~s~~e~~gg~~~l 156 (248)
|+++.. .+.++++++++++. .+|.|.|.+ .++..+|+.||++ +.+|..||| |++++
T Consensus 269 G~g~~~~~~~~~~l~~~~~~~~~~-------------~~V~~~G~~~~~~~~~~~~~~~~ad~~-v~ps~~E~~-~~~~l 333 (416)
T 2x6q_A 269 GVMAHDDPEGWIYFEKTLRKIGED-------------YDVKVLTNLIGVHAREVNAFQRASDVI-LQMSIREGF-GLTVT 333 (416)
T ss_dssp ECCCTTCHHHHHHHHHHHHHHTTC-------------TTEEEEEGGGTCCHHHHHHHHHHCSEE-EECCSSCSS-CHHHH
T ss_pred ecCcccchhHHHHHHHHHHHhCCC-------------CcEEEecccCCCCHHHHHHHHHhCCEE-EECCCcCCC-ccHHH
Confidence 998752 35677888888774 256666533 3899999999994 668888986 99999
Q ss_pred HHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-Hh-chhHHHHH
Q 043830 157 EAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFC-AL-SSGIVANV 234 (248)
Q Consensus 157 EA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 234 (248)
||||||+|||+++.+ +. .+.+.+..+|+++. |+++|+++|..+++|++.+++|++++++++. .+ |+..++++
T Consensus 334 EAma~G~PvI~~~~~-g~---~e~i~~~~~g~l~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 407 (416)
T 2x6q_A 334 EAMWKGKPVIGRAVG-GI---KFQIVDGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERY 407 (416)
T ss_dssp HHHHTTCCEEEESCH-HH---HHHCCBTTTEEEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHcCCCEEEccCC-CC---hhheecCCCeEEEC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999997542 33 33333334445543 9999999999999999999999999999986 45 78999999
Q ss_pred HHHHHHHh
Q 043830 235 WNLLNFHV 242 (248)
Q Consensus 235 l~~~~~~~ 242 (248)
.++|++++
T Consensus 408 ~~~~~~l~ 415 (416)
T 2x6q_A 408 LDILNSLG 415 (416)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHhh
Confidence 99998875
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.94 E-value=1.6e-25 Score=194.82 Aligned_cols=218 Identities=17% Similarity=0.099 Sum_probs=169.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcC---CCeEEEEeCCC--cchHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLA---HRQVWMASSIH--RGEEKVMLAVHKVLM 74 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~--~~~~~~ll~a~~~l~ 74 (248)
|+..++.+.+.+.+.+++.+++|+ +|... .+ ..+.....+++.++ +++++++.|+. .|+++.+++|+..+.
T Consensus 148 s~~~~~~~~~~~~~~~~~~vi~ng-v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~ 224 (394)
T 3okp_A 148 SQYTLRRFKSAFGSHPTFEHLPSG-VDVKRFTP--ATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVI 224 (394)
T ss_dssp CHHHHHHHHHHHCSSSEEEECCCC-BCTTTSCC--CCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCeEEecCC-cCHHHcCC--CCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHH
Confidence 677888888765566899999985 45432 21 12234566777775 44677776654 477899999999999
Q ss_pred HhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccC-----
Q 043830 75 QKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFL----- 147 (248)
Q Consensus 75 ~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~----- 147 (248)
++.|+++|+|+|+++.. +.+++++ .++. .+|.+.+.. +++..+|+.||++ +.+|..
T Consensus 225 ~~~~~~~l~i~G~g~~~-~~l~~~~--~~~~-------------~~v~~~g~~~~~~~~~~~~~ad~~-v~ps~~~~~~~ 287 (394)
T 3okp_A 225 AARPDAQLLIVGSGRYE-STLRRLA--TDVS-------------QNVKFLGRLEYQDMINTLAAADIF-AMPARTRGGGL 287 (394)
T ss_dssp HHSTTCEEEEECCCTTH-HHHHHHT--GGGG-------------GGEEEEESCCHHHHHHHHHHCSEE-EECCCCBGGGT
T ss_pred hhCCCeEEEEEcCchHH-HHHHHHH--hccc-------------CeEEEcCCCCHHHHHHHHHhCCEE-EecCccccccc
Confidence 88999999999998765 7777776 3443 356677765 7999999999995 567877
Q ss_pred --CCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 043830 148 --PGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 148 --e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 225 (248)
|++ |++++|||++|+|||+++.+ +.++.+ ..+.|+++.++|+++|+++|.++++|++.+++|++++++++.+
T Consensus 288 ~~e~~-~~~~~Ea~a~G~PvI~~~~~-~~~e~i----~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 361 (394)
T 3okp_A 288 DVEGL-GIVYLEAQACGVPVIAGTSG-GAPETV----TPATGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEA 361 (394)
T ss_dssp BCCSS-CHHHHHHHHTTCCEEECSST-TGGGGC----CTTTEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ccccc-CcHHHHHHHcCCCEEEeCCC-ChHHHH----hcCCceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 885 89999999999999997654 555443 2335677777899999999999999999999999999999875
Q ss_pred -h-chhHHHHHHHHHHHHhhh
Q 043830 226 -L-SSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 226 -~-~~~~~~~~l~~~~~~~~~ 244 (248)
+ |+..++++.++|+++...
T Consensus 362 ~~s~~~~~~~~~~~~~~~~r~ 382 (394)
T 3okp_A 362 EWSWEIMGERLTNILQSEPRK 382 (394)
T ss_dssp HTBHHHHHHHHHHHHHSCCC-
T ss_pred hCCHHHHHHHHHHHHHHhccC
Confidence 5 799999999999987654
No 9
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.93 E-value=5.1e-25 Score=194.08 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=167.5
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCccccccc-CCCCC---CcccHHHHHHhcC--CCeEEEEeCC-C--cchHHHHHHHH
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEY-DESEG---DIGSIEDLKASLA--HRQVWMASSI-H--RGEEKVMLAVH 70 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~-~~~~~---~~~~~~~~r~~~~--~~~v~l~~~~-~--~~~~~~ll~a~ 70 (248)
|+..++.... ++++++++.+++|+ +|... .+... .......++++++ +.+++++.|+ . .|+++.+++|+
T Consensus 196 S~~~~~~~~~~~~~~~~~i~vi~ng-vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~ 274 (439)
T 3fro_A 196 SRGYLIDEWGFFRNFEGKITYVFNG-IDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAI 274 (439)
T ss_dssp CHHHHHHTHHHHGGGTTSEEECCCC-CCTTTSCGGGSCSCHHHHHHHHHHHHTCCSCEEEEEECCSSCTTBCHHHHHHHH
T ss_pred CHHHHHHHhhhhhhcCCceeecCCC-CCchhcCcccccchhhhhHHHHHHHcCCCCCcEEEEEcccccccccHHHHHHHH
Confidence 4555555322 45788999999985 45432 22100 1123556777765 3466766554 3 47889999999
Q ss_pred HHHHHhC--CCeEEEEecCCCCC-HHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEEEcCc
Q 043830 71 KVLMQKN--PNLVTIIVPRHPQH-GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 71 ~~l~~~~--~~~~lvivG~~~~~-~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~v~~s 145 (248)
..+.++. ++++|+|+|+++.. .+.+++++++++ . .+++.+ +.+++..+|+.||++ +.||
T Consensus 275 ~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~--------------~~~~~g~~~~~~~~~~~~~adv~-v~ps 338 (439)
T 3fro_A 275 EILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-N--------------VKVITEMLSREFVRELYGSVDFV-IIPS 338 (439)
T ss_dssp HHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-T--------------EEEECSCCCHHHHHHHHTTCSEE-EECB
T ss_pred HHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-C--------------EEEEcCCCCHHHHHHHHHHCCEE-EeCC
Confidence 9998766 89999999998753 256778887776 2 233444 456899999999995 5688
Q ss_pred cCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHH
Q 043830 146 FLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFC 224 (248)
Q Consensus 146 ~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~ 224 (248)
..|++ |++++||||||+|||+++. ++.++.+ +.++|+++.++|+++++++|.++++ |++.+++|+++++++++
T Consensus 339 ~~e~~-~~~~~EAma~G~Pvi~s~~-~~~~e~~----~~~~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 412 (439)
T 3fro_A 339 YFEPF-GLVALEAMCLGAIPIASAV-GGLRDII----TNETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAM 412 (439)
T ss_dssp SCCSS-CHHHHHHHHTTCEEEEESS-THHHHHC----CTTTCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred CCCCc-cHHHHHHHHCCCCeEEcCC-CCcceeE----EcCceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 88986 8999999999999999854 3444433 3456788888999999999999999 99999999999999997
Q ss_pred Hh-chhHHHHHHHHHHHHhhhh
Q 043830 225 AL-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 225 ~~-~~~~~~~~l~~~~~~~~~~ 245 (248)
++ |+..+++++++|++++..+
T Consensus 413 ~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 413 SFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp TSCHHHHHHHHHHHHHTCSCCB
T ss_pred hCcHHHHHHHHHHHHHHHHHhh
Confidence 77 8999999999999988765
No 10
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.91 E-value=8.9e-24 Score=189.51 Aligned_cols=219 Identities=8% Similarity=-0.010 Sum_probs=159.2
Q ss_pred CHHHHHHHHH--cC--------CCCCCeEEcCCcccccc-cCCCCCC--------------cccHHHHHHhcC---C-Ce
Q 043830 1 STLQAIRFQL--LE--------ASPFTINFSGDLKYVHE-YDESEGD--------------IGSIEDLKASLA---H-RQ 51 (248)
Q Consensus 1 s~~~~~~l~~--~g--------v~~~kI~v~gn~~~d~~-~~~~~~~--------------~~~~~~~r~~~~---~-~~ 51 (248)
|+..++.+.+ +| ++++|+.|++|+ +|.. +.+.... ......++++++ + .+
T Consensus 214 S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ng-vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 292 (485)
T 1rzu_A 214 SPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNG-IDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSP 292 (485)
T ss_dssp CHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCC-BCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSC
T ss_pred CHhHHHHHhccccCcchHHHHHhhcCCceEEcCC-CcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCe
Confidence 5667777754 34 577899999985 4543 2221100 012356677665 2 56
Q ss_pred EEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccEE-EEcCh
Q 043830 52 VWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVY-VVDTL 127 (248)
Q Consensus 52 v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~~ 127 (248)
++++.|+. .|+++.+++|+..+.+ ++++|+|+|+++. ..+.+++++.+++ . +|. +.+..
T Consensus 293 ~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~-~--------------~v~~~~g~~ 355 (485)
T 1rzu_A 293 LFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHH-G--------------RVGVAIGYN 355 (485)
T ss_dssp EEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTT-T--------------TEEEEESCC
T ss_pred EEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCC-C--------------cEEEecCCC
Confidence 77776653 4788999999999865 4899999999863 2367888877764 1 343 45543
Q ss_pred -hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc---------CCceEEEcCCHHH
Q 043830 128 -GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL---------NPKSVLQVSGKSE 197 (248)
Q Consensus 128 -~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~---------g~g~~~~~~~~~~ 197 (248)
+++..+|+.||+ ++.||..|+| |++++||||||+|||+++. ++.++ .+.+. ++|+++.+.|+++
T Consensus 356 ~~~~~~~~~~adv-~v~pS~~E~~-~~~~lEAma~G~PvI~s~~-gg~~e---~v~~~~~~~~~~~~~~G~l~~~~d~~~ 429 (485)
T 1rzu_A 356 EPLSHLMQAGCDA-IIIPSRFEPC-GLTQLYALRYGCIPVVART-GGLAD---TVIDANHAALASKAATGVQFSPVTLDG 429 (485)
T ss_dssp HHHHHHHHHHCSE-EEECCSCCSS-CSHHHHHHHHTCEEEEESS-HHHHH---HCCBCCHHHHHTTCCCBEEESSCSHHH
T ss_pred HHHHHHHHhcCCE-EEECcccCCC-CHHHHHHHHCCCCEEEeCC-CChhh---eecccccccccccCCcceEeCCCCHHH
Confidence 355899999999 5668888986 9999999999999999754 33333 33332 4678888899999
Q ss_pred HHHHHHHhh---hCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhhhh
Q 043830 198 LEEALSQLF---SDARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 198 l~~~i~~ll---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 245 (248)
|+++|.+++ +|++.+++|++++++ ..+ |+.++++++++|++++...
T Consensus 430 la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 430 LKQAIRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HhCChHHHHHHHHHHHHHhhCCC
Confidence 999999999 799999999999875 455 7999999999999987653
No 11
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.91 E-value=1.9e-23 Score=187.29 Aligned_cols=218 Identities=10% Similarity=-0.023 Sum_probs=156.7
Q ss_pred CHHHHHHHHH--cCCC--------C--CCeEEcCCccccccc-CCCCCC--------------cccHHHHHHhcC-----
Q 043830 1 STLQAIRFQL--LEAS--------P--FTINFSGDLKYVHEY-DESEGD--------------IGSIEDLKASLA----- 48 (248)
Q Consensus 1 s~~~~~~l~~--~gv~--------~--~kI~v~gn~~~d~~~-~~~~~~--------------~~~~~~~r~~~~----- 48 (248)
|+..++.+.+ .|++ + +++.|++|+ +|... .+.... ...+..+|++++
T Consensus 212 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ng-vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 290 (485)
T 2qzs_A 212 SPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNG-VDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDD 290 (485)
T ss_dssp SHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCC-CCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCT
T ss_pred CHHHHHHHhccccCcchHHHHHhhccCCceEEEecC-CCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCC
Confidence 5566776654 3542 2 789999985 45432 221100 012356676664
Q ss_pred CCeEEEEeCC--CcchHHHHHHHHHHHHHhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecccCCCCCCccE-EEE
Q 043830 49 HRQVWMASSI--HRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSRHEKLMPRTNV-YVV 124 (248)
Q Consensus 49 ~~~v~l~~~~--~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v-~~~ 124 (248)
+.+++++.|+ ..|+++.+++|+..+.+ ++++|+|+|+++. ..+.+++++.+++ . +| ++.
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~-~--------------~v~~~~ 353 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYP-G--------------QVGVQI 353 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHST-T--------------TEEEEE
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCC-C--------------cEEEeC
Confidence 3467766554 34788999999999875 4899999999863 3367888887764 1 34 355
Q ss_pred cCh-hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc---------CCceEEEcCC
Q 043830 125 DTL-GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL---------NPKSVLQVSG 194 (248)
Q Consensus 125 ~~~-~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~---------g~g~~~~~~~ 194 (248)
+.. +++..+|+.||+ ++.||..|+| |++++||||||+|||+++. ++.+++ +.+. .+|+++.+.|
T Consensus 354 g~~~~~~~~~~~~adv-~v~pS~~E~~-g~~~lEAma~G~PvI~s~~-gg~~e~---v~~~~~~~~~~~~~~G~l~~~~d 427 (485)
T 2qzs_A 354 GYHEAFSHRIMGGADV-ILVPSRFEPC-GLTQLYGLKYGTLPLVRRT-GGLADT---VSDCSLENLADGVASGFVFEDSN 427 (485)
T ss_dssp SCCHHHHHHHHHHCSE-EEECCSCCSS-CSHHHHHHHHTCEEEEESS-HHHHHH---CCBCCHHHHHTTCCCBEEECSSS
T ss_pred CCCHHHHHHHHHhCCE-EEECCccCCC-cHHHHHHHHCCCCEEECCC-CCccce---eccCccccccccccceEEECCCC
Confidence 543 456899999999 5668888986 9999999999999999754 344333 3332 4678888899
Q ss_pred HHHHHHHHHHhh---hCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhhh
Q 043830 195 KSELEEALSQLF---SDARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 195 ~~~l~~~i~~ll---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 244 (248)
+++|+++|.+++ +|++.+++|++++++ ..+ |+.++++++++|++++..
T Consensus 428 ~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 428 AWSLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999 799999999999874 455 899999999999988654
No 12
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.91 E-value=3.1e-23 Score=181.18 Aligned_cols=211 Identities=13% Similarity=0.095 Sum_probs=157.5
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccc-cCCCCCCcccHHHHHHhcC-CCeEEEEeCCC---cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHE-YDESEGDIGSIEDLKASLA-HRQVWMASSIH---RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~-~~~~~~~~~~~~~~r~~~~-~~~v~l~~~~~---~~~~~~ll~a~~~l~~ 75 (248)
|+..++.+.+ +.+.+++ +++|+ +|.. +.+.... . .+. +++++++.|+. .|+.+.+++|+..+.+
T Consensus 168 s~~~~~~~~~-~~~~~~~-vi~~~-v~~~~~~~~~~~----~----~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~ 236 (406)
T 2gek_A 168 SDLARRWQME-ALGSDAV-EIPNG-VDVASFADAPLL----D----GYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVA 236 (406)
T ss_dssp SHHHHHHHHH-HHSSCEE-ECCCC-BCHHHHHTCCCC----T----TCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-hcCCCcE-EecCC-CChhhcCCCchh----h----hccCCCeEEEEEeeeCccccCHHHHHHHHHHHHH
Confidence 5667777765 4455688 99985 3432 1111000 0 111 34566665544 3778999999999988
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCcc-CCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSF-LPGLAG 152 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~-~e~~gg 152 (248)
++|+++|+|+|+++. ++++++++++ . .+|.+.+.. .++..+|+.||++ +.+|. .|++ |
T Consensus 237 ~~~~~~l~i~G~~~~--~~l~~~~~~~--~-------------~~v~~~g~~~~~~~~~~~~~adv~-v~ps~~~e~~-~ 297 (406)
T 2gek_A 237 RFPDVEILIVGRGDE--DELREQAGDL--A-------------GHLRFLGQVDDATKASAMRSADVY-CAPHLGGESF-G 297 (406)
T ss_dssp TSTTCEEEEESCSCH--HHHHHHTGGG--G-------------GGEEECCSCCHHHHHHHHHHSSEE-EECCCSCCSS-C
T ss_pred HCCCeEEEEEcCCcH--HHHHHHHHhc--c-------------CcEEEEecCCHHHHHHHHHHCCEE-EecCCCCCCC-c
Confidence 889999999999875 6788777665 2 245555543 5789999999995 45675 7885 8
Q ss_pred CCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHH
Q 043830 153 HNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIV 231 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (248)
++++|||+||+|||+++. ++.+ +.+.+...|+++.++|+++|+++|.++++|++.+++|++++++++..+ |+..+
T Consensus 298 ~~~~Ea~a~G~PvI~~~~-~~~~---e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~ 373 (406)
T 2gek_A 298 IVLVEAMAAGTAVVASDL-DAFR---RVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVS 373 (406)
T ss_dssp HHHHHHHHHTCEEEECCC-HHHH---HHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHH
T ss_pred hHHHHHHHcCCCEEEecC-CcHH---HHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999754 2333 333334556777779999999999999999999999999999999866 79999
Q ss_pred HHHHHHHHHHhhhh
Q 043830 232 ANVWNLLNFHVFRR 245 (248)
Q Consensus 232 ~~~l~~~~~~~~~~ 245 (248)
+++.+.|++++.++
T Consensus 374 ~~~~~~~~~~~~~~ 387 (406)
T 2gek_A 374 AQIMRVYETVSGAG 387 (406)
T ss_dssp HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988765
No 13
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.90 E-value=4.5e-23 Score=194.54 Aligned_cols=178 Identities=9% Similarity=0.051 Sum_probs=144.0
Q ss_pred CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCC----------CHHHHHHHHHhcCCceEEecccCCCC
Q 043830 49 HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQ----------HGKEIAQKLQKEGEVVALRSRHEKLM 116 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~----------~~~~l~~~~~~~~l~~~~~~~~~~~~ 116 (248)
+++++++.|+. .|+++.+++|+..+.+..++++|+|+|+++. ..+++++++.++++..
T Consensus 571 ~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~---------- 640 (816)
T 3s28_A 571 KKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNG---------- 640 (816)
T ss_dssp TSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBB----------
T ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCC----------
Confidence 56778777654 4789999999999987778999999999882 3477889999999864
Q ss_pred CCccEEEEcC------hhHHHHHHh-hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceE
Q 043830 117 PRTNVYVVDT------LGELRQLYK-LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSV 189 (248)
Q Consensus 117 ~~~~v~~~~~------~~~l~~~y~-~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~ 189 (248)
+|.|+|. ..++..+|+ .||+ |+.||..|+| |++++||||||+|||+++. ++.++++ .+..+|++
T Consensus 641 ---~V~flG~~~~~v~~~eL~~~~~~aaDv-fV~PS~~Egf-glvllEAMA~G~PVIasd~-GG~~EiV---~dg~~Gll 711 (816)
T 3s28_A 641 ---QFRWISSQMDRVRNGELYRYICDTKGA-FVQPALYEAF-GLTVVEAMTCGLPTFATCK-GGPAEII---VHGKSGFH 711 (816)
T ss_dssp ---BEEEECCCCCHHHHHHHHHHHHHTTCE-EEECCSCBSS-CHHHHHHHHTTCCEEEESS-BTHHHHC---CBTTTBEE
T ss_pred ---cEEEccCccccCCHHHHHHHHHhcCeE-EEECCCccCc-cHHHHHHHHcCCCEEEeCC-CChHHHH---ccCCcEEE
Confidence 4445441 257888888 6799 5678988986 9999999999999999854 4565544 34456788
Q ss_pred EEcCCHHHHHHHHHHhh----hCHHHHHHHHHHHHHHH-HHh-chhHHHHHHHHHHHHhhhh
Q 043830 190 LQVSGKSELEEALSQLF----SDARVLEAQQMAAKQAF-CAL-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 190 ~~~~~~~~l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~ 245 (248)
+.+.|+++|+++|.+++ .|++.+++|+++|++++ ..+ |+..+++++++|+.+-.++
T Consensus 712 v~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk 773 (816)
T 3s28_A 712 IDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWK 773 (816)
T ss_dssp ECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHhh
Confidence 88899999999997766 89999999999999999 455 8999999999999876554
No 14
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.90 E-value=4.4e-23 Score=159.24 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=122.0
Q ss_pred eEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 51 QVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 51 ~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
+++++.|+. .|+++.+++|+..++ +.|+++|+|+|+++.. ++++++++++++ .+++ +.. +..
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~~-~~~~~~~~~~~~--~v~~-g~~-----------~~~ 66 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPDE-KKIKLLAQKLGV--KAEF-GFV-----------NSN 66 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTTH-HHHHHHHHHHTC--EEEC-CCC-----------CHH
T ss_pred eEEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCccH-HHHHHHHHHcCC--eEEE-eec-----------CHH
Confidence 456666543 478899999999884 4589999999998875 889999998887 2333 322 136
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCC-cEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGC-AVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~-Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++..+|+.||++ +.||..|++ |++++|||+||+ |||+++..++.+++.. +. +.++.++|+++++++|.++++
T Consensus 67 ~~~~~~~~adv~-v~ps~~e~~-~~~~~Eama~G~vPvi~~~~~~~~~~~~~---~~--~~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 67 ELLEILKTCTLY-VHAANVESE-AIACLEAISVGIVPVIANSPLSATRQFAL---DE--RSLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp HHHHHHTTCSEE-EECCCSCCC-CHHHHHHHHTTCCEEEECCTTCGGGGGCS---SG--GGEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEE-EECCcccCc-cHHHHHHHhcCCCcEEeeCCCCchhhhcc---CC--ceEEcCCCHHHHHHHHHHHHh
Confidence 899999999995 568888986 899999999998 9999655555554332 22 357888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHh-chhHHH
Q 043830 208 DARVLEAQQMAAKQAFCAL-SSGIVA 232 (248)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~~~~~ 232 (248)
|++.+++|++++++++.++ |+..++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~s~~~~~~ 165 (166)
T 3qhp_A 140 NKLERERMQNEYAKSALNYTLENSVI 165 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHHHHHCChhhhhc
Confidence 9999999999999998776 655443
No 15
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.89 E-value=1.9e-23 Score=181.61 Aligned_cols=210 Identities=12% Similarity=0.076 Sum_probs=141.1
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccC-CCCCC--cccHHHHHHhcC----CCe-EEEEeCCC---cchHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYD-ESEGD--IGSIEDLKASLA----HRQ-VWMASSIH---RGEEKVMLAV 69 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~-~~~~~--~~~~~~~r~~~~----~~~-v~l~~~~~---~~~~~~ll~a 69 (248)
|+.+++.+.+.|++++||.++||+..|.... +.... ......++++++ +++ +++++++. .|+++.+++|
T Consensus 149 s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a 228 (384)
T 1vgv_A 149 TETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHA 228 (384)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHHHH
Confidence 5778888988999999999999975553221 00000 001124555543 344 45565542 2678899999
Q ss_pred HHHHHHhCCCeEEEEe-cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCcc
Q 043830 70 HKVLMQKNPNLVTIIV-PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 70 ~~~l~~~~~~~~lviv-G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~ 146 (248)
+..+.++.|+++++++ |.++...+++++++.. ..+|.|++. ..++..+|+.||++ |.+|
T Consensus 229 ~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~----------------~~~v~~~g~~~~~~~~~~~~~ad~~-v~~S- 290 (384)
T 1vgv_A 229 LADIATTHQDIQIVYPVHLNPNVREPVNRILGH----------------VKNVILIDPQEYLPFVWLMNHAWLI-LTDS- 290 (384)
T ss_dssp HHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTT----------------CTTEEEECCCCHHHHHHHHHHCSEE-EESS-
T ss_pred HHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhc----------------CCCEEEeCCCCHHHHHHHHHhCcEE-EECC-
Confidence 9999888899998885 4332122334443321 125677543 36899999999994 5566
Q ss_pred CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh
Q 043830 147 LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL 226 (248)
Q Consensus 147 ~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 226 (248)
||. ++|||+||+|||+++..++.++++ +.|+|+++.. |+++|+++|.++++|++.+++|+++++++..
T Consensus 291 ----g~~-~lEA~a~G~PvI~~~~~~~~~e~v----~~g~g~lv~~-d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~-- 358 (384)
T 1vgv_A 291 ----GGI-QEEAPSLGKPVLVMRDTTERPEAV----TAGTVRLVGT-DKQRIVEEVTRLLKDENEYQAMSRAHNPYGD-- 358 (384)
T ss_dssp ----STG-GGTGGGGTCCEEEESSCCSCHHHH----HHTSEEEECS-SHHHHHHHHHHHHHCHHHHHHHHSSCCTTCC--
T ss_pred ----cch-HHHHHHcCCCEEEccCCCCcchhh----hCCceEEeCC-CHHHHHHHHHHHHhChHHHhhhhhccCCCcC--
Confidence 234 899999999999987645666654 3345566655 9999999999999999999999998876543
Q ss_pred chhHHHHHHHHHHHH
Q 043830 227 SSGIVANVWNLLNFH 241 (248)
Q Consensus 227 ~~~~~~~~l~~~~~~ 241 (248)
..+++++++.+.++
T Consensus 359 -~~~~~~i~~~~~~~ 372 (384)
T 1vgv_A 359 -GQACSRILEALKNN 372 (384)
T ss_dssp -SCHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHH
Confidence 34455555555443
No 16
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.88 E-value=5.5e-23 Score=178.08 Aligned_cols=209 Identities=13% Similarity=0.129 Sum_probs=145.9
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCe-EEEEeCCCc---chHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQ-VWMASSIHR---GEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~-v~l~~~~~~---~~~~~ll~a~~~l~~ 75 (248)
|+.+++.+.+.|++++||.++||+.+|... .+.. .....++.++++++ +++++++.. |+++.+++|+..+.+
T Consensus 158 s~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~---~~~~~~~~~~~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~ 234 (375)
T 3beo_A 158 TAKSATNLQKENKDESRIFITGNTAIDALKTTVKE---TYSHPVLEKLGNNRLVLMTAHRRENLGEPMRNMFRAIKRLVD 234 (375)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCS---SCCCHHHHTTTTSEEEEEECCCGGGTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcccEEEECChhHhhhhhhhhh---hhhHHHHHhccCCCeEEEEecccccchhHHHHHHHHHHHHHh
Confidence 677888998899999999999998666432 1110 01134555555444 445555432 678899999999988
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhc-CCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKE-GEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLAG 152 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~gg 152 (248)
+.|+++++ +|.|++ .++++.++++ +. ..+|.|++. ..++..+|+.||++ +.+| |+
T Consensus 235 ~~~~~~~i-~~~g~~--~~~~~~~~~~~~~-------------~~~v~~~g~~~~~~~~~~~~~ad~~-v~~s-----g~ 292 (375)
T 3beo_A 235 KHEDVQVV-YPVHMN--PVVRETANDILGD-------------YGRIHLIEPLDVIDFHNVAARSYLM-LTDS-----GG 292 (375)
T ss_dssp HCTTEEEE-EECCSC--HHHHHHHHHHHTT-------------CTTEEEECCCCHHHHHHHHHTCSEE-EECC-----HH
T ss_pred hCCCeEEE-EeCCCC--HHHHHHHHHHhhc-------------cCCEEEeCCCCHHHHHHHHHhCcEE-EECC-----CC
Confidence 88999855 466664 3455555443 21 135777654 24899999999995 5555 23
Q ss_pred CCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHH
Q 043830 153 HNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVA 232 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (248)
+++|||+||+|||+++..++.++++ +.|+|+++. .|+++|+++|.++++|++.+++|+++++++. ...+++
T Consensus 293 -~~lEA~a~G~Pvi~~~~~~~~~e~v----~~g~g~~v~-~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~ 363 (375)
T 3beo_A 293 -VQEEAPSLGVPVLVLRDTTERPEGI----EAGTLKLAG-TDEETIFSLADELLSDKEAHDKMSKASNPYG---DGRASE 363 (375)
T ss_dssp -HHHHHHHHTCCEEECSSCCSCHHHH----HTTSEEECC-SCHHHHHHHHHHHHHCHHHHHHHCCCCCTTC---CSCHHH
T ss_pred -hHHHHHhcCCCEEEecCCCCCceee----cCCceEEcC-CCHHHHHHHHHHHHhChHhHhhhhhcCCCCC---CCcHHH
Confidence 3899999999999986544566543 345556554 4999999999999999999999999887654 346667
Q ss_pred HHHHHHHHHhh
Q 043830 233 NVWNLLNFHVF 243 (248)
Q Consensus 233 ~~l~~~~~~~~ 243 (248)
++++.+.+++.
T Consensus 364 ~i~~~~~~~~~ 374 (375)
T 3beo_A 364 RIVEAILKHFN 374 (375)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 77777776653
No 17
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.88 E-value=1.3e-23 Score=185.60 Aligned_cols=200 Identities=14% Similarity=0.069 Sum_probs=136.8
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCe-EEEEeCC-C-cchHHHHHHHHHHHHHh
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQ-VWMASSI-H-RGEEKVMLAVHKVLMQK 76 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~-v~l~~~~-~-~~~~~~ll~a~~~l~~~ 76 (248)
|+..++.+.+.|++.+++.+++|+ +|.+. .+. ....++.+ ++++++. . +|+.+.+|+|+..+.++
T Consensus 202 S~~~~~~l~~~g~~~~~~~~i~~g-~d~~~~~~~----------~~~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~ 270 (413)
T 2x0d_A 202 SELLKQYFNNKGYNFTDEYFFQPK-INTTLKNYI----------NDKRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQK 270 (413)
T ss_dssp SHHHHHHHHHHTCCCSEEEEECCC-CCHHHHTTT----------TSCCCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCceEEeCCC-cCchhhccc----------ccccCCCCEEEEEecCchhccCHHHHHHHHHHHHHh
Confidence 678889998888876778888764 34321 110 00012233 4445543 2 47789999999999888
Q ss_pred CCC---eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCC
Q 043830 77 NPN---LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLA 151 (248)
Q Consensus 77 ~~~---~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~g 151 (248)
.|+ ++|+|+|+++.+ .++++.. +|.|.|. .++++.+|+.||+ |+.+|..|+|
T Consensus 271 ~~~~~~~~l~ivG~~~~~--------~~l~~~~-------------~v~f~G~~~~~~l~~~~~~adv-~v~pS~~E~~- 327 (413)
T 2x0d_A 271 YDRSNEWKIISVGEKHKD--------IALGKGI-------------HLNSLGKLTLEDYADLLKRSSI-GISLMISPHP- 327 (413)
T ss_dssp CTTGGGCEEEEEESCCCC--------EEEETTE-------------EEEEEESCCHHHHHHHHHHCCE-EECCCSSSSC-
T ss_pred CCCCCceEEEEEcCCchh--------hhcCCcC-------------cEEEcCCCCHHHHHHHHHhCCE-EEEecCCCCC-
Confidence 885 899999998764 2344433 4556664 4799999999999 6778988986
Q ss_pred CCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhH
Q 043830 152 GHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGI 230 (248)
Q Consensus 152 g~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~ 230 (248)
|++++||||||+|||++ .+ +..+++ .+..+|+++.++|+++|+++|.++++|++++++ ++++.+..+ |+..
T Consensus 328 g~~~lEAmA~G~PVV~~-~~-g~~e~v---~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~~~~~~~W~~~ 399 (413)
T 2x0d_A 328 SYPPLEMAHFGLRVITN-KY-ENKDLS---NWHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKESSNMMFYINE 399 (413)
T ss_dssp CSHHHHHHHTTCEEEEE-CB-TTBCGG---GTBTTEEEESSCSHHHHHHHHHHHHHHTC----------CCBSCGGGCCC
T ss_pred CcHHHHHHhCCCcEEEe-CC-Ccchhh---hcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHHHHHhCCHHHH
Confidence 89999999999999984 33 333433 234456888889999999999999999988877 556655566 7777
Q ss_pred HHHHHHHHHHHhh
Q 043830 231 VANVWNLLNFHVF 243 (248)
Q Consensus 231 ~~~~l~~~~~~~~ 243 (248)
.++ ++.|++++.
T Consensus 400 ~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 400 FNE-FSFIKEIEE 411 (413)
T ss_dssp C----TTHHHHHT
T ss_pred HHH-HHHHHHHHh
Confidence 666 788877754
No 18
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.88 E-value=8.4e-22 Score=156.41 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=127.2
Q ss_pred HHHHHHhcC--CCeEEEEeCC---CcchHHHHHHHHHHHH--HhCCCeEEEEecCCCC-CHHHHHHHHHhcCCceEEecc
Q 043830 40 IEDLKASLA--HRQVWMASSI---HRGEEKVMLAVHKVLM--QKNPNLVTIIVPRHPQ-HGKEIAQKLQKEGEVVALRSR 111 (248)
Q Consensus 40 ~~~~r~~~~--~~~v~l~~~~---~~~~~~~ll~a~~~l~--~~~~~~~lvivG~~~~-~~~~l~~~~~~~~l~~~~~~~ 111 (248)
...+|++++ +.+++++.|+ ..|+.+.+++|+..+. ++.|+++|+|+|.++. ..+++++++++++
T Consensus 24 ~~~~r~~~~~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-------- 95 (200)
T 2bfw_A 24 KKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-------- 95 (200)
T ss_dssp HHHHHHHTTCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHcCCCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC--------
Confidence 456777776 5566666553 3477899999999997 6778999999999761 2367888887765
Q ss_pred cCCCCCCccEEE-EcCh--hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCce
Q 043830 112 HEKLMPRTNVYV-VDTL--GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKS 188 (248)
Q Consensus 112 ~~~~~~~~~v~~-~~~~--~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~ 188 (248)
+|.+ .+.. .++..+|+.||++ +.+|..|++ |++++|||+||+|||+++.+ +. .+.+ +.+.|+
T Consensus 96 --------~v~~~~g~~~~~~~~~~~~~ad~~-l~ps~~e~~-~~~~~Ea~a~G~PvI~~~~~-~~---~e~~-~~~~g~ 160 (200)
T 2bfw_A 96 --------NVKVITEMLSREFVRELYGSVDFV-IIPSYFEPF-GLVALEAMCLGAIPIASAVG-GL---RDII-TNETGI 160 (200)
T ss_dssp --------TEEEECSCCCHHHHHHHHTTCSEE-EECCSCCSS-CHHHHHHHHTTCEEEEESCH-HH---HHHC-CTTTCE
T ss_pred --------CEEEEeccCCHHHHHHHHHHCCEE-EECCCCCCc-cHHHHHHHHCCCCEEEeCCC-Ch---HHHc-CCCceE
Confidence 2344 4543 4899999999995 557877885 89999999999999997532 33 3333 445568
Q ss_pred EEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHH
Q 043830 189 VLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 189 ~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~ 225 (248)
++.+.|+++++++|.++++ |++.+++|++++++++.+
T Consensus 161 ~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 161 LVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp EECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999 999999999999998765
No 19
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.88 E-value=8.1e-23 Score=177.44 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=144.9
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCe-EEEEeCCC--cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQ-VWMASSIH--RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~-v~l~~~~~--~~~~~~ll~a~~~l~~~~ 77 (248)
|+..++.+.+.|++++||.++||+.+|..... .....+++.+++++ +++++++. .++++.+++|+..+.+++
T Consensus 154 s~~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~-----~~~~~~~~~~~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~ 228 (376)
T 1v4v_A 154 TPLAKANLLKEGKREEGILVTGQTGVDAVLLA-----AKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAF 228 (376)
T ss_dssp SHHHHHHHHTTTCCGGGEEECCCHHHHHHHHH-----HHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCcceEEEECCchHHHHhhh-----hhhhHHHHhcCCCCEEEEEeCcccchHHHHHHHHHHHHHHhhC
Confidence 56788889889999999999999765542110 00011222344334 44445543 246889999999998888
Q ss_pred CCeEEEEe-cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 78 PNLVTIIV-PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 78 ~~~~lviv-G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
|+++++++ |.++...+.+++++.. ..+|.|.++ ..++..+|+.||++ |++| + |.
T Consensus 229 ~~~~lv~~~g~~~~~~~~l~~~~~~----------------~~~v~~~g~~g~~~~~~~~~~ad~~-v~~S--~---g~- 285 (376)
T 1v4v_A 229 PHLTFVYPVHLNPVVREAVFPVLKG----------------VRNFVLLDPLEYGSMAALMRASLLL-VTDS--G---GL- 285 (376)
T ss_dssp TTSEEEEECCSCHHHHHHHHHHHTT----------------CTTEEEECCCCHHHHHHHHHTEEEE-EESC--H---HH-
T ss_pred CCeEEEEECCCCHHHHHHHHHHhcc----------------CCCEEEECCCCHHHHHHHHHhCcEE-EECC--c---CH-
Confidence 89988886 6554222455554321 125777743 23889999999995 5666 2 45
Q ss_pred HHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHH
Q 043830 155 ISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANV 234 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (248)
++|||+||+|||+++..++.++.+ +.|+|..+. .|+++|+++|.++++|++.+++|+++++.+ .+..+++++
T Consensus 286 ~lEA~a~G~PvI~~~~~~~~~~~~----~~g~g~lv~-~d~~~la~~i~~ll~d~~~~~~~~~~~~~~---~~~~~~~~i 357 (376)
T 1v4v_A 286 QEEGAALGVPVVVLRNVTERPEGL----KAGILKLAG-TDPEGVYRVVKGLLENPEELSRMRKAKNPY---GDGKAGLMV 357 (376)
T ss_dssp HHHHHHTTCCEEECSSSCSCHHHH----HHTSEEECC-SCHHHHHHHHHHHHTCHHHHHHHHHSCCSS---CCSCHHHHH
T ss_pred HHHHHHcCCCEEeccCCCcchhhh----cCCceEECC-CCHHHHHHHHHHHHhChHhhhhhcccCCCC---CCChHHHHH
Confidence 789999999999987666776643 345444442 799999999999999999999999754332 156899999
Q ss_pred HHHHHHHhhh
Q 043830 235 WNLLNFHVFR 244 (248)
Q Consensus 235 l~~~~~~~~~ 244 (248)
++.|.+++..
T Consensus 358 ~~~i~~~~~~ 367 (376)
T 1v4v_A 358 ARGVAWRLGL 367 (376)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcc
Confidence 9999988763
No 20
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.87 E-value=1.3e-21 Score=178.08 Aligned_cols=216 Identities=15% Similarity=-0.004 Sum_probs=144.7
Q ss_pred CHHHHHHHHH-cC--------CCCCCeEEcCCccccccc-CCCC-------CCc--------ccHHHHHHhcC-----CC
Q 043830 1 STLQAIRFQL-LE--------ASPFTINFSGDLKYVHEY-DESE-------GDI--------GSIEDLKASLA-----HR 50 (248)
Q Consensus 1 s~~~~~~l~~-~g--------v~~~kI~v~gn~~~d~~~-~~~~-------~~~--------~~~~~~r~~~~-----~~ 50 (248)
|+..++++.+ .+ .+.++|.+|.|+ +|... .|.. .+. ..+..++..++ +.
T Consensus 249 S~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NG-iD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~ 327 (536)
T 3vue_A 249 SPYYAEELISGIARGCELDNIMRLTGITGIVNG-MDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKI 327 (536)
T ss_dssp CHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCC-CCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred CHHHhhhhhcccccccccccccccCCeEEEECC-cchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCC
Confidence 6677777754 22 346789999985 45432 2210 000 01223444443 56
Q ss_pred eEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCCCH-HHHHHHHHhcCCceEEecccCCCCCCccEEEEc--
Q 043830 51 QVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHG-KEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-- 125 (248)
Q Consensus 51 ~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~-~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-- 125 (248)
|++++.|+. .|+++.+++|+..+.+. +.+++|+|.|+... ..++.....++. ++.+.+
T Consensus 328 p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~~~~~---------------~v~~~~~~ 390 (536)
T 3vue_A 328 PLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEEKYPG---------------KVRAVVKF 390 (536)
T ss_dssp CEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHHHSTT---------------TEEEECSC
T ss_pred cEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHhhcCC---------------ceEEEEec
Confidence 788887764 48899999999998654 56788888876532 334444444432 233332
Q ss_pred ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCce----------EEEcCCH
Q 043830 126 TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKS----------VLQVSGK 195 (248)
Q Consensus 126 ~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~----------~~~~~~~ 195 (248)
...++..+|+.||+ |+.||.+|+| |++++|||+||+|||+++. ++.+|++. +..+|+ ++.+.|+
T Consensus 391 ~~~~~~~~~~~aD~-~v~PS~~E~f-gl~~lEAma~G~PvI~s~~-gG~~e~V~---dg~~G~~~~~~~~~g~l~~~~d~ 464 (536)
T 3vue_A 391 NAPLAHLIMAGADV-LAVPSRFEPC-GLIQLQGMRYGTPCACAST-GGLVDTVI---EGKTGFHMGRLSVDCKVVEPSDV 464 (536)
T ss_dssp CHHHHHHHHHHCSE-EEECCSCCSS-CSHHHHHHHTTCCEEECSC-THHHHHCC---BTTTEEECCCCCSCTTCCCHHHH
T ss_pred cHHHHHHHHHhhhe-eecccccCCC-CHHHHHHHHcCCCEEEcCC-CCchheee---CCCCccccccCCCceeEECCCCH
Confidence 34578899999999 5678999996 9999999999999999754 56666543 333344 5677899
Q ss_pred HHHHHHHHHhhh--CHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHh
Q 043830 196 SELEEALSQLFS--DARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHV 242 (248)
Q Consensus 196 ~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 242 (248)
++|+++|.++++ +...+++|++++. .+++ |+.+++++.++|.++.
T Consensus 465 ~~la~ai~ral~~~~~~~~~~~~~~am--~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 465 KKVAATLKRAIKVVGTPAYEEMVRNCM--NQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHH--HSCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHhh
Confidence 999999988775 3344566666552 2345 8999999999999874
No 21
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.87 E-value=3e-21 Score=176.37 Aligned_cols=207 Identities=13% Similarity=0.093 Sum_probs=147.4
Q ss_pred CCeEEcCCcccccccCCCCCCcccHHHHHHhcC--CCeEEEEeC-CCcchHHHHHHHHHHHHHhCCCeEEEEec-CCCCC
Q 043830 16 FTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--HRQVWMASS-IHRGEEKVMLAVHKVLMQKNPNLVTIIVP-RHPQH 91 (248)
Q Consensus 16 ~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~--~~~v~l~~~-~~~~~~~~ll~a~~~l~~~~~~~~lvivG-~~~~~ 91 (248)
+||.+++| .|......... ....+|++++ +.+++++.+ ...|+++.+++|+..+.++.|+++|+|+| +++.+
T Consensus 344 ~~i~~ipn-~~~~~~~~~~~---~~~~~r~~~~~~~~~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~ 419 (568)
T 2vsy_A 344 EHVLRLQG-AFQPSDTSRVV---AEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEAD 419 (568)
T ss_dssp SEEEECSS-CSCCCCTTCCC---CCCCCTGGGTCCTTSCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTHH
T ss_pred ceeEcCCC-cCCCCCCCCCC---CCCCCccccCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHHH
Confidence 68889988 34332100000 0112344554 333343443 33477889999999998889999999999 66654
Q ss_pred HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECC
Q 043830 92 GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGP 169 (248)
Q Consensus 92 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~ 169 (248)
+++++++.++|+. ..+|.|.|.. .++..+|+.||+ |+.||.. |+ |++++|||+||+|||+.+
T Consensus 420 -~~l~~~~~~~~l~------------~~~v~~~g~~~~~~~~~~~~~adv-~v~ps~~-~~-g~~~lEAma~G~Pvv~~~ 483 (568)
T 2vsy_A 420 -ARLRAFAHAQGVD------------AQRLVFMPKLPHPQYLARYRHADL-FLDTHPY-NA-HTTASDALWTGCPVLTTP 483 (568)
T ss_dssp -HHHHHHHHHTTCC------------GGGEEEECCCCHHHHHHHGGGCSE-EECCSSS-CC-SHHHHHHHHTTCCEEBCC
T ss_pred -HHHHHHHHHcCCC------------hhHEEeeCCCCHHHHHHHHhcCCE-EeeCCCC-CC-cHHHHHHHhCCCCEEecc
Confidence 8899999999885 1356677755 489999999999 5678887 75 999999999999999832
Q ss_pred CCC---ChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH---HHh-chhHHHHHHHHHHHHh
Q 043830 170 HIG---HYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAF---CAL-SSGIVANVWNLLNFHV 242 (248)
Q Consensus 170 ~~~---~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~ 242 (248)
... +.. ...+...|..- +..+|+++++++|..+++|++.+++|++++++.+ ..+ |+..++++.++|++++
T Consensus 484 g~~~~s~~~--~~~l~~~g~~e-~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~ 560 (568)
T 2vsy_A 484 GETFAARVA--GSLNHHLGLDE-MNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALA 560 (568)
T ss_dssp CSSGGGSHH--HHHHHHHTCGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHH--HHHHHHCCChh-hhcCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 210 111 11122223211 1235999999999999999999999999999988 445 7899999999999988
Q ss_pred hhh
Q 043830 243 FRR 245 (248)
Q Consensus 243 ~~~ 245 (248)
...
T Consensus 561 ~~~ 563 (568)
T 2vsy_A 561 RRH 563 (568)
T ss_dssp HTT
T ss_pred HHH
Confidence 754
No 22
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.86 E-value=2.8e-21 Score=173.58 Aligned_cols=209 Identities=10% Similarity=0.054 Sum_probs=146.7
Q ss_pred CCCeEEcCCccccccc-CCC---CCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCC----eEEEE
Q 043830 15 PFTINFSGDLKYVHEY-DES---EGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPN----LVTII 84 (248)
Q Consensus 15 ~~kI~v~gn~~~d~~~-~~~---~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~----~~lvi 84 (248)
..+|.+++|+ +|... .+. +...+ ...+|+++++++++++.++. .|++..+|+|+..+.+++|+ ++|++
T Consensus 218 ~~~v~vip~G-ID~~~f~~~~~~~~~~~-~~~lr~~~~~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~ 295 (482)
T 1uqt_A 218 AFRTEVYPIG-IEPKEIAKQAAGPLPPK-LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQ 295 (482)
T ss_dssp EEEEEECCCC-CCHHHHHHHHHSCCCHH-HHHHHHHTTTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEE
T ss_pred EEEEEEEecc-CCHHHHHHHhcCcchHH-HHHHHHHhCCCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEE
Confidence 4578888874 45431 110 00011 45788888888888887764 48899999999999888875 67999
Q ss_pred ecCC-----CCC---HHHHHHHHHhcCCceEEecccCCCCCCccEE-EEc--ChhHHHHHHhhCCEEEEcCccCCCCCCC
Q 043830 85 VPRH-----PQH---GKEIAQKLQKEGEVVALRSRHEKLMPRTNVY-VVD--TLGELRQLYKLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 85 vG~~-----~~~---~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~--~~~~l~~~y~~ad~~~v~~s~~e~~gg~ 153 (248)
+|.. +++ .+++++++.+.+.... .. ....|. +.+ +..++..+|+.||++ +.+|+.||| |+
T Consensus 296 vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g--~~-----~~~~v~~~~g~v~~~el~~ly~~ADv~-v~pS~~EGf-gL 366 (482)
T 1uqt_A 296 IAPTSRGDVQAYQDIRHQLENEAGRINGKYG--QL-----GWTPLYYLNQHFDRKLLMKIFRYSDVG-LVTPLRDGM-NL 366 (482)
T ss_dssp ECCBCSTTSHHHHHHHHHHHHHHHHHHHHHC--BT-----TBCSEEEECSCCCHHHHHHHHHHCSEE-EECCSSBSC-CH
T ss_pred EECCCccchHHHHHHHHHHHHHHHHHhhhcc--cC-----CCceEEEeCCCCCHHHHHHHHHHccEE-EECCCcccC-Cc
Confidence 9852 211 1234444433322100 00 001233 444 457999999999995 568899997 99
Q ss_pred CHHHHHhhCC-----cEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHh-
Q 043830 154 NISEAAAAGC-----AVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCAL- 226 (248)
Q Consensus 154 ~~lEA~a~G~-----Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~- 226 (248)
+++||||||+ |+|++..+|..+ .+ . +|+++.+.|+++++++|.++|+ +++.+++|++++++++.++
T Consensus 367 v~lEAmA~g~~~~~gpvV~S~~~G~~~----~l-~--~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s 439 (482)
T 1uqt_A 367 VAKEYVAAQDPANPGVLVLSQFAGAAN----EL-T--SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKND 439 (482)
T ss_dssp HHHHHHHHSCTTSCCEEEEETTBGGGG----TC-T--TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHhCCCCCCCCEEEECCCCCHH----Hh-C--CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 9999999997 899876553332 22 2 3488889999999999999998 4788999999999999887
Q ss_pred chhHHHHHHHHHHHH
Q 043830 227 SSGIVANVWNLLNFH 241 (248)
Q Consensus 227 ~~~~~~~~l~~~~~~ 241 (248)
+...++++++.|++.
T Consensus 440 ~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 440 INHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 688888888888765
No 23
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.86 E-value=8.2e-21 Score=162.75 Aligned_cols=194 Identities=11% Similarity=-0.037 Sum_probs=141.9
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~ 77 (248)
|+..++.+.+ .+|+.+++|+ +|... .+.. . ...+++++++.|+. .|+.+.+++|+..+
T Consensus 127 S~~~~~~~~~----~~~~~vi~ng-vd~~~~~~~~---~-------~~~~~~~i~~vG~~~~~Kg~~~li~a~~~~---- 187 (342)
T 2iuy_A 127 SRAQRAHCGG----GDDAPVIPIP-VDPARYRSAA---D-------QVAKEDFLLFMGRVSPHKGALEAAAFAHAC---- 187 (342)
T ss_dssp CHHHHHHTTC----CTTSCBCCCC-BCGGGSCCST---T-------CCCCCSCEEEESCCCGGGTHHHHHHHHHHH----
T ss_pred CHHHHHHHhc----CCceEEEcCC-CChhhcCccc---c-------cCCCCCEEEEEeccccccCHHHHHHHHHhc----
Confidence 5666776655 5789999986 45432 2110 0 11234456555543 47889999999876
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCcc---------
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSF--------- 146 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~--------- 146 (248)
+++|+|+|+++.. +.+++++++++ . +|.|.+.. .++..+|+.||++ +.||.
T Consensus 188 -~~~l~i~G~g~~~-~~l~~~~~~~~-~--------------~v~~~g~~~~~~l~~~~~~adv~-v~ps~~~~~~~~~~ 249 (342)
T 2iuy_A 188 -GRRLVLAGPAWEP-EYFDEITRRYG-S--------------TVEPIGEVGGERRLDLLASAHAV-LAMSQAVTGPWGGI 249 (342)
T ss_dssp -TCCEEEESCCCCH-HHHHHHHHHHT-T--------------TEEECCCCCHHHHHHHHHHCSEE-EECCCCCCCTTCSC
T ss_pred -CcEEEEEeCcccH-HHHHHHHHHhC-C--------------CEEEeccCCHHHHHHHHHhCCEE-EECCcccccccccc
Confidence 6889999998864 78888887765 2 34455533 4779999999995 56888
Q ss_pred -CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh--cCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 043830 147 -LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR--LNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAF 223 (248)
Q Consensus 147 -~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~--~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 223 (248)
.|+| |++++|||+||+|||+++. ++.++.+ .+ ...|+++.+ |+++|+++|.++++ ++++++++
T Consensus 250 ~~E~~-~~~~~EAma~G~PvI~s~~-~~~~e~~---~~~~~~~g~~~~~-d~~~l~~~i~~l~~--------~~~~~~~~ 315 (342)
T 2iuy_A 250 WCEPG-ATVVSEAAVSGTPVVGTGN-GCLAEIV---PSVGEVVGYGTDF-APDEARRTLAGLPA--------SDEVRRAA 315 (342)
T ss_dssp CCCCC-CHHHHHHHHTTCCEEECCT-TTHHHHG---GGGEEECCSSSCC-CHHHHHHHHHTSCC--------HHHHHHHH
T ss_pred cccCc-cHHHHHHHhcCCCEEEcCC-CChHHHh---cccCCCceEEcCC-CHHHHHHHHHHHHH--------HHHHHHHH
Confidence 7886 8999999999999999865 4555543 33 345577777 99999999999997 56677776
Q ss_pred -HHh-chhHHHHHHHHHHHHhhhh
Q 043830 224 -CAL-SSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 224 -~~~-~~~~~~~~l~~~~~~~~~~ 245 (248)
..+ |+..++++.++|++++..+
T Consensus 316 ~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 316 VRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp HHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHHHHccC
Confidence 455 7999999999999998765
No 24
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.84 E-value=6.1e-21 Score=168.01 Aligned_cols=208 Identities=11% Similarity=0.112 Sum_probs=145.9
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccC-CCCCCcccHHHHHHhcCCCeEEEE-eCCC---cchHHHHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYD-ESEGDIGSIEDLKASLAHRQVWMA-SSIH---RGEEKVMLAVHKVLMQ 75 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~-~~~~~~~~~~~~r~~~~~~~v~l~-~~~~---~~~~~~ll~a~~~l~~ 75 (248)
|+..+++|.+.|++++||.++||+++|.... +.. ......++++.+++++++ +++. .++++.+++|+..+.+
T Consensus 177 se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~---~~~~~~~~~l~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~ 253 (403)
T 3ot5_A 177 TKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQK---DYHHPILENLGDNRLILMTAHRRENLGEPMQGMFEAVREIVE 253 (403)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCT---TCCCHHHHSCTTCEEEEECCCCHHHHTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhh---hcchHHHHhccCCCEEEEEeCcccccCcHHHHHHHHHHHHHH
Confidence 5778899999999999999999988775421 110 001123333444555554 3321 2346789999999988
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHh-cCCceEEecccCCCCCCccEEEEcChh--HHHHHHhhCCEEEEcCccCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQK-EGEVVALRSRHEKLMPRTNVYVVDTLG--ELRQLYKLTPIAVIGGSFLPGLAG 152 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~y~~ad~~~v~~s~~e~~gg 152 (248)
++|++++++.++ ++ ..+++.+++ ++. ..+|.++++.+ ++..+|+.||++ ++.| ||
T Consensus 254 ~~~~~~~v~~~~-~~--~~~~~~l~~~~~~-------------~~~v~l~~~l~~~~~~~l~~~ad~v-v~~S-----Gg 311 (403)
T 3ot5_A 254 SREDTELVYPMH-LN--PAVREKAMAILGG-------------HERIHLIEPLDAIDFHNFLRKSYLV-FTDS-----GG 311 (403)
T ss_dssp HCTTEEEEEECC-SC--HHHHHHHHHHHTT-------------CTTEEEECCCCHHHHHHHHHHEEEE-EECC-----HH
T ss_pred hCCCceEEEecC-CC--HHHHHHHHHHhCC-------------CCCEEEeCCCCHHHHHHHHHhcCEE-EECC-----cc
Confidence 889998877643 32 223333333 221 13678888764 899999999995 5554 24
Q ss_pred CCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc-CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHH
Q 043830 153 HNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV-SGKSELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIV 231 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (248)
.+ +||+++|+|||+++..++.++.+ +.|+ ++.+ .|+++|++++.++++|++.+++|+++++.+ ...+++
T Consensus 312 ~~-~EA~a~g~PvV~~~~~~~~~e~v----~~g~--~~lv~~d~~~l~~ai~~ll~~~~~~~~m~~~~~~~---g~~~aa 381 (403)
T 3ot5_A 312 VQ-EEAPGMGVPVLVLRDTTERPEGI----EAGT--LKLIGTNKENLIKEALDLLDNKESHDKMAQAANPY---GDGFAA 381 (403)
T ss_dssp HH-HHGGGTTCCEEECCSSCSCHHHH----HHTS--EEECCSCHHHHHHHHHHHHHCHHHHHHHHHSCCTT---CCSCHH
T ss_pred HH-HHHHHhCCCEEEecCCCcchhhe----eCCc--EEEcCCCHHHHHHHHHHHHcCHHHHHHHHhhcCcc---cCCcHH
Confidence 43 89999999999987666777643 4454 3444 499999999999999999999998766543 257899
Q ss_pred HHHHHHHHHHhh
Q 043830 232 ANVWNLLNFHVF 243 (248)
Q Consensus 232 ~~~l~~~~~~~~ 243 (248)
+++++.+.+++.
T Consensus 382 ~rI~~~l~~~l~ 393 (403)
T 3ot5_A 382 NRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999998775
No 25
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.84 E-value=1.4e-20 Score=165.27 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=142.9
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCC---CcccHHHHHHhcC----CCeEEEE-eCC---CcchHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEG---DIGSIEDLKASLA----HRQVWMA-SSI---HRGEEKVMLAV 69 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~---~~~~~~~~r~~~~----~~~v~l~-~~~---~~~~~~~ll~a 69 (248)
|+..+++|.+.|++++||.++||+++|........ .......++++++ +++++++ +++ ..++++.+++|
T Consensus 174 se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A 253 (396)
T 3dzc_A 174 TDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERICQA 253 (396)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHH
Confidence 57788999999999999999999877654211000 0000255666664 3565554 432 22457899999
Q ss_pred HHHHHHhCCCeEEEEe-cCCCCCHHHHHHHHHhc-CCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCc
Q 043830 70 HKVLMQKNPNLVTIIV-PRHPQHGKEIAQKLQKE-GEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 70 ~~~l~~~~~~~~lviv-G~~~~~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s 145 (248)
+..+.+++|++++++. |.++ .+++.+++. +. ..+|.++++. .++..+|+.||++ +++|
T Consensus 254 ~~~l~~~~~~~~~v~~~g~~~----~~~~~l~~~~~~-------------~~~v~~~~~lg~~~~~~l~~~ad~v-v~~S 315 (396)
T 3dzc_A 254 LITTAEQHPECQILYPVHLNP----NVREPVNKLLKG-------------VSNIVLIEPQQYLPFVYLMDRAHII-LTDS 315 (396)
T ss_dssp HHHHHHHCTTEEEEEECCBCH----HHHHHHHHHTTT-------------CTTEEEECCCCHHHHHHHHHHCSEE-EESC
T ss_pred HHHHHHhCCCceEEEEeCCCh----HHHHHHHHHHcC-------------CCCEEEeCCCCHHHHHHHHHhcCEE-EECC
Confidence 9999888899988775 4332 233333332 21 1367787765 5899999999995 5555
Q ss_pred cCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 043830 146 FLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCA 225 (248)
Q Consensus 146 ~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 225 (248)
||. .+|||++|+|||++++.++.++.+ +.|.+ .+...|+++|++++.++++|++.+++|+++++.+
T Consensus 316 -----Gg~-~~EA~a~G~PvV~~~~~~~~~e~v----~~G~~-~lv~~d~~~l~~ai~~ll~d~~~~~~m~~~~~~~--- 381 (396)
T 3dzc_A 316 -----GGI-QEEAPSLGKPVLVMRETTERPEAV----AAGTV-KLVGTNQQQICDALSLLLTDPQAYQAMSQAHNPY--- 381 (396)
T ss_dssp -----SGG-GTTGGGGTCCEEECCSSCSCHHHH----HHTSE-EECTTCHHHHHHHHHHHHHCHHHHHHHHTSCCTT---
T ss_pred -----ccH-HHHHHHcCCCEEEccCCCcchHHH----HcCce-EEcCCCHHHHHHHHHHHHcCHHHHHHHhhccCCC---
Confidence 233 389999999999986555666543 34542 2333589999999999999999999999876553
Q ss_pred hchhHHHHHHHHHH
Q 043830 226 LSSGIVANVWNLLN 239 (248)
Q Consensus 226 ~~~~~~~~~l~~~~ 239 (248)
...++++++++.+.
T Consensus 382 ~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 382 GDGKACQRIADILA 395 (396)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHh
Confidence 25789999988775
No 26
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.83 E-value=1.2e-20 Score=147.54 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=109.7
Q ss_pred CCeEEEEeCCC--cchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHH--hcCCceEEecccCCCCCCccEEEE
Q 043830 49 HRQVWMASSIH--RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQ--KEGEVVALRSRHEKLMPRTNVYVV 124 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~--~~~l~~~~~~~~~~~~~~~~v~~~ 124 (248)
+++++++.|+. .|+.+.+++|+..+ ++++|+|+|.++.. ++++++++ .+++. .+|.+.
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~-~~l~~~~~~~~~~l~-------------~~v~~~ 83 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKG-DHAERYARKIMKIAP-------------DNVKFL 83 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTT-STHHHHHHHHHHHSC-------------TTEEEE
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccH-HHHHHHHHhhhcccC-------------CcEEEe
Confidence 45666665543 47788999998775 68999999998876 67888877 66664 245666
Q ss_pred cCh--hHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHH
Q 043830 125 DTL--GELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEAL 202 (248)
Q Consensus 125 ~~~--~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i 202 (248)
+.. .++..+|+.||+++ .+|..|++ |.+++|||+||+|||+++.+ ...+.+.+...|+++ ..|+++++++|
T Consensus 84 g~~~~~e~~~~~~~adi~v-~ps~~e~~-~~~~~Eama~G~PvI~~~~~----~~~e~i~~~~~g~~~-~~d~~~l~~~i 156 (177)
T 2f9f_A 84 GSVSEEELIDLYSRCKGLL-CTAKDEDF-GLTPIEAMASGKPVIAVNEG----GFKETVINEKTGYLV-NADVNEIIDAM 156 (177)
T ss_dssp ESCCHHHHHHHHHHCSEEE-ECCSSCCS-CHHHHHHHHTTCCEEEESSH----HHHHHCCBTTTEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCEEE-eCCCcCCC-ChHHHHHHHcCCcEEEeCCC----CHHHHhcCCCccEEe-CCCHHHHHHHH
Confidence 644 46999999999965 57777885 89999999999999997542 333333334456777 89999999999
Q ss_pred HHhhhCHHH-HHHHHHHHH
Q 043830 203 SQLFSDARV-LEAQQMAAK 220 (248)
Q Consensus 203 ~~ll~~~~~-~~~~~~~~~ 220 (248)
.++++|++. +++++++++
T Consensus 157 ~~l~~~~~~~~~~~~~~a~ 175 (177)
T 2f9f_A 157 KKVSKNPDKFKKDCFRRAK 175 (177)
T ss_dssp HHHHHCTTTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHh
Confidence 999999886 555555443
No 27
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.82 E-value=1.4e-19 Score=156.01 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=123.2
Q ss_pred CCeE-EEEeCCC--cchHHHHHHHHHHHHHhCCCeE-EEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEE
Q 043830 49 HRQV-WMASSIH--RGEEKVMLAVHKVLMQKNPNLV-TIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVV 124 (248)
Q Consensus 49 ~~~v-~l~~~~~--~~~~~~ll~a~~~l~~~~~~~~-lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ 124 (248)
+.++ ++++|+. .|+.+.+++|+..+.+ +++ ++++|.++ .+++++++.++++. +|.|.
T Consensus 182 ~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i~G~~~--~~~l~~~~~~~~~~--------------~v~~~ 242 (364)
T 1f0k_A 182 GPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQSGKGS--QQSVEQAYAEAGQP--------------QHKVT 242 (364)
T ss_dssp SSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEECCTTC--HHHHHHHHHHTTCT--------------TSEEE
T ss_pred CCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEEcCCch--HHHHHHHHhhcCCC--------------ceEEe
Confidence 4454 4455443 3667888999998854 677 56788876 37888888887653 35666
Q ss_pred cChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCC---hHHHHHHHHhcCCceEEEcCC--HHHHH
Q 043830 125 DTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGH---YSNMVSAMQRLNPKSVLQVSG--KSELE 199 (248)
Q Consensus 125 ~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~---~~~~~~~~~~~g~g~~~~~~~--~~~l~ 199 (248)
+...++..+|+.||++++ +| ||.+++|||+||+|||+++.++. .......+.+.|.|.++.++| +++|+
T Consensus 243 g~~~~~~~~~~~ad~~v~-~s-----g~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~g~~~~~~d~~~~~la 316 (364)
T 1f0k_A 243 EFIDDMAAAYAWADVVVC-RS-----GALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVA 316 (364)
T ss_dssp SCCSCHHHHHHHCSEEEE-CC-----CHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEEECCGGGCCHHHHH
T ss_pred cchhhHHHHHHhCCEEEE-CC-----chHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCcEEEeccccCCHHHHH
Confidence 766789999999999654 44 37889999999999999876531 112234556667777777777 99999
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Q 043830 200 EALSQLFSDARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNF 240 (248)
Q Consensus 200 ~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 240 (248)
++|.++ |++.+++|++++++++..+ |+..++++.+.|++
T Consensus 317 ~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 317 NTLAGW--SRETLLTMAERARAASIPDATERVANEVSRVARA 356 (364)
T ss_dssp HHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTT
T ss_pred HHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH
Confidence 999999 9999999999999887655 67777777777764
No 28
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.81 E-value=4.6e-19 Score=161.94 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=89.9
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHh----cCCceEEEc---CCHHHHHHH
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQR----LNPKSVLQV---SGKSELEEA 201 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~----~g~g~~~~~---~~~~~l~~~ 201 (248)
++..+|+.||+ ||.||++|+| |++++||||||+|||+++. +++++.+..+.. .++|+.+.+ .|+++++++
T Consensus 511 d~~~~~~~adv-fV~PS~~Egf-Gl~~LEAmA~G~PvI~s~~-gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aea 587 (725)
T 3nb0_A 511 DYDEFVRGCHL-GVFPSYYEPW-GYTPAECTVMGVPSITTNV-SGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQ 587 (725)
T ss_dssp CHHHHHHHCSE-EECCCSSBSS-CHHHHHHHHTTCCEEEETT-BHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHH
T ss_pred HHHHHHhhceE-EEeccccCCC-CHHHHHHHHcCCCEEEeCC-CChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHH
Confidence 68999999999 6789999996 9999999999999999754 477766554321 134577753 455555555
Q ss_pred HH----Hhhh-CHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhhhhhc
Q 043830 202 LS----QLFS-DARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVFRRAL 247 (248)
Q Consensus 202 i~----~ll~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 247 (248)
|. .+++ ++..+++|++++++....+ |+..+++++++|++++..+.+
T Consensus 588 La~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL~~~~~ 639 (725)
T 3nb0_A 588 LVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLALRRGYP 639 (725)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccc
Confidence 54 4443 7888999999999888888 999999999999999876543
No 29
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.80 E-value=2.6e-18 Score=153.60 Aligned_cols=201 Identities=11% Similarity=0.061 Sum_probs=135.8
Q ss_pred CeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCCC--cchHHHHHHHHHHHHHhCCC---eEEEEecC---
Q 043830 17 TINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSIH--RGEEKVMLAVHKVLMQKNPN---LVTIIVPR--- 87 (248)
Q Consensus 17 kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~~--~~~~~~ll~a~~~l~~~~~~---~~lvivG~--- 87 (248)
+|.++++ ++|... .+... +....+|+++++++++++.++. .|++..+|+|| .+.+++|+ +.|+++|.
T Consensus 250 ~v~viP~-GID~~~f~~~~~--~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr 325 (496)
T 3t5t_A 250 RLRTMPL-GYSPLTLDGRNP--QLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNR 325 (496)
T ss_dssp EEEECCC-CBCGGGC----C--CCCTTHHHHHTTSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCC
T ss_pred EEEEecc-EeCHHHhchhhH--HHHHHHHHHhCCceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCC
Confidence 5667775 356542 22111 1225678888888888876654 48899999999 88888887 45777752
Q ss_pred --CCCCHHHHH----HHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHH
Q 043830 88 --HPQHGKEIA----QKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAA 159 (248)
Q Consensus 88 --~~~~~~~l~----~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~ 159 (248)
++++ .+++ +++.+.+... + ...|.|.+ +..++..+|+.||++ +.+|+.||| |++++|||
T Consensus 326 ~~~~~y-~~l~~~l~~lv~~in~~~-----g-----~~~V~f~g~v~~~el~aly~~ADv~-vv~SlrEGf-gLv~~Eam 392 (496)
T 3t5t_A 326 LYVPAN-ADYVHRVETAVAEANAEL-----G-----SDTVRIDNDNDVNHTIACFRRADLL-IFNSTVDGQ-NLSTFEAP 392 (496)
T ss_dssp TTSHHH-HHHHHHHHHHHHHHHHHH-----C-----TTSEEEEECCCHHHHHHHHHHCSEE-EECCSSBSC-CSHHHHHH
T ss_pred CCchHH-HHHHHHHHHHHHHhcccc-----C-----CcCEEEeCCCCHHHHHHHHHhccEE-EECcccccC-ChhHHHHH
Confidence 2222 3444 3333332210 0 00355554 367999999999995 568899997 99999999
Q ss_pred hhC---CcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC-HHHHHHHHHHHHHHHHHh-chhHHHHH
Q 043830 160 AAG---CAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD-ARVLEAQQMAAKQAFCAL-SSGIVANV 234 (248)
Q Consensus 160 a~G---~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (248)
||| .|+|++..+|.. + .+.++ |+++.+.|+++++++|.++|++ ++.++++.++.++++..+ ...-++.+
T Consensus 393 A~~~~~g~lVlSe~aGa~-~---~l~~~--allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~~d~~~W~~~f 466 (496)
T 3t5t_A 393 LVNERDADVILSETCGAA-E---VLGEY--CRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAARPWTLEAWVQAQ 466 (496)
T ss_dssp HHCSSCCEEEEETTBTTH-H---HHGGG--SEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCBHHHHHHHH
T ss_pred HhCCCCCCEEEeCCCCCH-H---HhCCC--EEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 996 888888665433 2 23233 4889999999999999999986 578889999999998776 34444555
Q ss_pred HHHHHH
Q 043830 235 WNLLNF 240 (248)
Q Consensus 235 l~~~~~ 240 (248)
++.+..
T Consensus 467 l~~L~~ 472 (496)
T 3t5t_A 467 LDGLAA 472 (496)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555543
No 30
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.76 E-value=2.1e-18 Score=150.91 Aligned_cols=210 Identities=11% Similarity=0.023 Sum_probs=143.1
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC--CCeEE-EEeCCCc-----chHHHHHHHHHH
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA--HRQVW-MASSIHR-----GEEKVMLAVHKV 72 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~--~~~v~-l~~~~~~-----~~~~~ll~a~~~ 72 (248)
|+..+++|.+.|++++||.++||+++|...... +......++++++ .++++ +.+++.. +.++.+++|+..
T Consensus 154 te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~--~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~ 231 (385)
T 4hwg_A 154 TEHARRYLIAEGLPAELTFKSGSHMPEVLDRFM--PKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSLQM 231 (385)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHH--HHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcCcEEEECCchHHHHHHhh--hhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHH
Confidence 567889999999999999999999877542100 0012234566665 34444 4444332 346789999999
Q ss_pred HHHhCCCeEEEEecCCCCCHHHHHHHHHhc-C-CceEEecccCCCCCCccEEEEcChh--HHHHHHhhCCEEEEcCccCC
Q 043830 73 LMQKNPNLVTIIVPRHPQHGKEIAQKLQKE-G-EVVALRSRHEKLMPRTNVYVVDTLG--ELRQLYKLTPIAVIGGSFLP 148 (248)
Q Consensus 73 l~~~~~~~~lvivG~~~~~~~~l~~~~~~~-~-l~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~y~~ad~~~v~~s~~e 148 (248)
+.+++ ++.+++ +.|| .+++.+++. + +. ...+|+++++.+ ++..+|+.||+++ +.|
T Consensus 232 l~~~~-~~~vv~-p~~p----~~~~~l~~~~~~~~-----------~~~~v~l~~~lg~~~~~~l~~~adlvv-t~S--- 290 (385)
T 4hwg_A 232 LIKEY-NFLIIF-STHP----RTKKRLEDLEGFKE-----------LGDKIRFLPAFSFTDYVKLQMNAFCIL-SDS--- 290 (385)
T ss_dssp HHHHH-CCEEEE-EECH----HHHHHHHTSGGGGG-----------TGGGEEECCCCCHHHHHHHHHHCSEEE-ECC---
T ss_pred HHhcC-CeEEEE-ECCh----HHHHHHHHHHHHhc-----------CCCCEEEEcCCCHHHHHHHHHhCcEEE-ECC---
Confidence 87655 676555 4444 355555554 4 21 123677777643 7899999999964 332
Q ss_pred CCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc-CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhc
Q 043830 149 GLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV-SGKSELEEALSQLFSDARVLEAQQMAAKQAFCALS 227 (248)
Q Consensus 149 ~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 227 (248)
|| +..||+++|+|||+.+...+.++.+ +.|+ ++.+ .|+++|++++..+++|+..+++|++++..+. ..
T Consensus 291 --Gg-v~~EA~alG~Pvv~~~~~ter~e~v----~~G~--~~lv~~d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~--g~ 359 (385)
T 4hwg_A 291 --GT-ITEEASILNLPALNIREAHERPEGM----DAGT--LIMSGFKAERVLQAVKTITEEHDNNKRTQGLVPDYN--EA 359 (385)
T ss_dssp --TT-HHHHHHHTTCCEEECSSSCSCTHHH----HHTC--CEECCSSHHHHHHHHHHHHTTCBTTBCCSCCCHHHH--TC
T ss_pred --cc-HHHHHHHcCCCEEEcCCCccchhhh----hcCc--eEEcCCCHHHHHHHHHHHHhChHHHHHhhccCCCCC--CC
Confidence 34 5799999999999976654555643 4453 4445 5999999999999999998888877666542 24
Q ss_pred hhHHHHHHHHHHHHhhh
Q 043830 228 SGIVANVWNLLNFHVFR 244 (248)
Q Consensus 228 ~~~~~~~l~~~~~~~~~ 244 (248)
.++++++++.+.+++..
T Consensus 360 g~aa~rI~~~l~~~~~~ 376 (385)
T 4hwg_A 360 GLVSKKILRIVLSYVDY 376 (385)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhh
Confidence 68999999999887653
No 31
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.75 E-value=1.2e-18 Score=153.51 Aligned_cols=178 Identities=13% Similarity=0.020 Sum_probs=123.2
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCccccccc-CCCCCCcccHHHHHHhcCCCeEEEEeCCCc--chHHHHHHHHHHHHHhC
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEY-DESEGDIGSIEDLKASLAHRQVWMASSIHR--GEEKVMLAVHKVLMQKN 77 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~-~~~~~~~~~~~~~r~~~~~~~v~l~~~~~~--~~~~~ll~a~~~l~~~~ 77 (248)
|+..++.+.+.| |+.|++|+ +|... .+... ....+++++++.|+.. |++ +..+.+..
T Consensus 186 S~~~~~~~~~~~----~i~vipng-vd~~~f~~~~~---------~~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~ 245 (406)
T 2hy7_A 186 SPAMAAEVVSRD----NVFHVGHG-VDHNLDQLGDP---------SPYAEGIHAVAVGSMLFDPEF------FVVASKAF 245 (406)
T ss_dssp CGGGGGGCSCST----TEEECCCC-BCTTHHHHHCS---------CSCCSSEEEEEECCTTBCHHH------HHHHHHHC
T ss_pred CHHHHHHHHhcC----CEEEEcCC-cChHhcCcccc---------cccCCCcEEEEEeccccccCH------HHHHHHhC
Confidence 445555555555 79999985 44431 11000 0112336777766543 444 34455667
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhhCCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKLTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~ad~~~v~~s~~e~~gg~~~ 155 (248)
|+++|+|+|+|+ ++++++. .+|.|.|.. +++..+|+.||+ ++.||..|++ |+++
T Consensus 246 ~~~~l~ivG~g~---------~~~~~l~-------------~~V~f~G~~~~~~l~~~~~~adv-~v~ps~~E~~-~~~~ 301 (406)
T 2hy7_A 246 PQVTFHVIGSGM---------GRHPGYG-------------DNVIVYGEMKHAQTIGYIKHARF-GIAPYASEQV-PVYL 301 (406)
T ss_dssp TTEEEEEESCSS---------CCCTTCC-------------TTEEEECCCCHHHHHHHHHTCSE-EECCBSCSCC-CTTH
T ss_pred CCeEEEEEeCch---------HHhcCCC-------------CCEEEcCCCCHHHHHHHHHhcCE-EEECCCcccC-chHH
Confidence 999999999886 3444543 356777754 689999999999 5678988986 9999
Q ss_pred HHHH-------hhCCcEEECCCCCChHHHHHHHHhcCCceE-EEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-
Q 043830 156 SEAA-------AAGCAVLTGPHIGHYSNMVSAMQRLNPKSV-LQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL- 226 (248)
Q Consensus 156 lEA~-------a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~- 226 (248)
+||| |||+|||+++. +.+..+|.+ +.++|+++|+++|.++++|++. .....+
T Consensus 302 lEAm~Kl~eYla~G~PVIas~~----------v~~~~~G~l~v~~~d~~~la~ai~~ll~~~~~---------~~~~~~s 362 (406)
T 2hy7_A 302 ADSSMKLLQYDFFGLPAVCPNA----------VVGPYKSRFGYTPGNADSVIAAITQALEAPRV---------RYRQCLN 362 (406)
T ss_dssp HHHCHHHHHHHHHTCCEEEEGG----------GTCSCSSEEEECTTCHHHHHHHHHHHHHCCCC---------CCSCCCB
T ss_pred HHHHHHHHHHhhCCCcEEEehh----------cccCcceEEEeCCCCHHHHHHHHHHHHhCcch---------hhhhcCC
Confidence 9999 99999999742 223445687 8889999999999999998871 223345
Q ss_pred chhHHHHHHHH--HHHH
Q 043830 227 SSGIVANVWNL--LNFH 241 (248)
Q Consensus 227 ~~~~~~~~l~~--~~~~ 241 (248)
|+..+++++++ |.+.
T Consensus 363 w~~~a~~~~~~~~y~~~ 379 (406)
T 2hy7_A 363 WSDTTDRVLDPRAYPET 379 (406)
T ss_dssp HHHHHHHHHCGGGSGGG
T ss_pred HHHHHHHHHHhhccccc
Confidence 78888888888 6653
No 32
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.60 E-value=8.3e-15 Score=127.14 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=112.9
Q ss_pred CCeEEE-EeCCC-c-chHHHHHHHHHHHHHhCCCeEEEE-ecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEE
Q 043830 49 HRQVWM-ASSIH-R-GEEKVMLAVHKVLMQKNPNLVTII-VPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVV 124 (248)
Q Consensus 49 ~~~v~l-~~~~~-~-~~~~~ll~a~~~l~~~~~~~~lvi-vG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ 124 (248)
+++.++ ++|.. . +..+.+++++..+... .++.+++ +|.+ ..+.+.+..++.+.. +.+.
T Consensus 179 ~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~-~~~~vi~~~G~~--~~~~~~~~~~~~~~~---------------~~v~ 240 (365)
T 3s2u_A 179 RRVNLLVLGGSLGAEPLNKLLPEALAQVPLE-IRPAIRHQAGRQ--HAEITAERYRTVAVE---------------ADVA 240 (365)
T ss_dssp SCCEEEECCTTTTCSHHHHHHHHHHHTSCTT-TCCEEEEECCTT--THHHHHHHHHHTTCC---------------CEEE
T ss_pred CCcEEEEECCcCCccccchhhHHHHHhcccc-cceEEEEecCcc--ccccccceecccccc---------------cccc
Confidence 445444 44332 2 2335677887766433 3444443 4442 336666666666543 3344
Q ss_pred cChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC---CChH-HHHHHHHhcCCceEEEcC--CHHHH
Q 043830 125 DTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI---GHYS-NMVSAMQRLNPKSVLQVS--GKSEL 198 (248)
Q Consensus 125 ~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~---~~~~-~~~~~~~~~g~g~~~~~~--~~~~l 198 (248)
++..+|+++|+.||+++. .+ |+.++.|+|++|+|+|+.|.. .+.+ ...+.+.+.|.|.++..+ +++.|
T Consensus 241 ~f~~dm~~~l~~aDlvI~-----ra-G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L 314 (365)
T 3s2u_A 241 PFISDMAAAYAWADLVIC-----RA-GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAEL 314 (365)
T ss_dssp SCCSCHHHHHHHCSEEEE-----CC-CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHH
T ss_pred cchhhhhhhhccceEEEe-----cC-CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHH
Confidence 555689999999999653 22 567889999999999986532 1222 245667777765555443 68999
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhh
Q 043830 199 EEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 199 ~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (248)
+++|.+|++||+.+++|++++++.. ...+++++.+.+.++.++
T Consensus 315 ~~~i~~ll~d~~~~~~m~~~a~~~~---~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 315 AAQLSEVLMHPETLRSMADQARSLA---KPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHcc
Confidence 9999999999999999999998753 457888999988887654
No 33
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.57 E-value=3.5e-14 Score=124.26 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=112.5
Q ss_pred CCe-EEEEeCCC-cchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC
Q 043830 49 HRQ-VWMASSIH-RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT 126 (248)
Q Consensus 49 ~~~-v~l~~~~~-~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~ 126 (248)
+++ +++.+|+. .+..+.+.+++..+.+. ++++++++++....++++ ++ ..+|.+.+.
T Consensus 241 ~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~~~~l~------~~-------------~~~v~~~~~ 299 (412)
T 3otg_A 241 ARPLVYLTLGTSSGGTVEVLRAAIDGLAGL--DADVLVASGPSLDVSGLG------EV-------------PANVRLESW 299 (412)
T ss_dssp TSCEEEEECTTTTCSCHHHHHHHHHHHHTS--SSEEEEECCSSCCCTTCC------CC-------------CTTEEEESC
T ss_pred CCCEEEEEcCCCCcCcHHHHHHHHHHHHcC--CCEEEEEECCCCChhhhc------cC-------------CCcEEEeCC
Confidence 444 44554443 34445566666665432 566666654433112211 11 136778887
Q ss_pred hhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHHHHHHHHH
Q 043830 127 LGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSELEEALSQ 204 (248)
Q Consensus 127 ~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~l~~~i~~ 204 (248)
. ++..+|+.||+++. .+ |+.+++|||++|+|+|+.+..++.....+.+.+.|.|..+..+ |+++|+++|.+
T Consensus 300 ~-~~~~~l~~ad~~v~-----~~-g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ 372 (412)
T 3otg_A 300 V-PQAALLPHVDLVVH-----HG-GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKR 372 (412)
T ss_dssp C-CHHHHGGGCSEEEE-----SC-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHH
T ss_pred C-CHHHHHhcCcEEEE-----CC-chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHH
Confidence 7 79999999999543 32 3467999999999999987765655666777777876766665 99999999999
Q ss_pred hhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhh
Q 043830 205 LFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 205 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (248)
+++|++.+++|++.++++... ..++++.+.+.+++.+
T Consensus 373 ll~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 373 LLAEESYRAGARAVAAEIAAM---PGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHCHHHHHHHHHHHHHHHHS---CCHHHHHTTHHHHHC-
T ss_pred HHhCHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHhcc
Confidence 999999999999999887654 3556666666666544
No 34
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.53 E-value=2.2e-13 Score=116.91 Aligned_cols=180 Identities=8% Similarity=-0.083 Sum_probs=118.2
Q ss_pred CHHHHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCCcchHHHHHHHHHHHHHhCCCe
Q 043830 1 STLQAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNL 80 (248)
Q Consensus 1 s~~~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~ 80 (248)
|+.+++.+.+.|++.++|.+.++. |...+ .+.. ...++++++++|+..+. ..|+. + .+++
T Consensus 141 S~~~~~~l~~~G~~~~ki~~~~~~--~~~~~-~~~~---------~~~~~~~i~yaG~l~k~--~~L~~---l---~~~~ 200 (339)
T 3rhz_A 141 SQKMIDKLRDFGMNVSKTVVQGMW--DHPTQ-APMF---------PAGLKREIHFPGNPERF--SFVKE---W---KYDI 200 (339)
T ss_dssp CHHHHHHHHHTTCCCSEEEECCSC--CCCCC-CCCC---------CCEEEEEEEECSCTTTC--GGGGG---C---CCSS
T ss_pred CHHHHHHHHHcCCCcCceeecCCC--CccCc-cccc---------ccCCCcEEEEeCCcchh--hHHHh---C---CCCC
Confidence 688999999999998899877753 32111 0000 00134677887765431 12222 1 4789
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEEEEcCccC------CCCCC
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIAVIGGSFL------PGLAG 152 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~~v~~s~~------e~~gg 152 (248)
+|+|+|+|+++ + +. +|.|.| +.++++.+|+.+|+.++..+-. .. -+
T Consensus 201 ~f~ivG~G~~~---------~--l~--------------nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~-~P 254 (339)
T 3rhz_A 201 PLKVYTWQNVE---------L--PQ--------------NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLY-CS 254 (339)
T ss_dssp CEEEEESCCCC---------C--CT--------------TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTC-CC
T ss_pred eEEEEeCCccc---------C--cC--------------CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhc-Ch
Confidence 99999999875 1 21 344555 3479999998888877752210 11 15
Q ss_pred CCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHH
Q 043830 153 HNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIV 231 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (248)
+.++|+||+|+|||+++.+ ...+.+ .+.+ .++.+++.++++++|..+. ++.+++|++++++..... ++...
T Consensus 255 ~Kl~eymA~G~PVI~~~~~-~~~~~v---~~~~--~G~~~~~~~e~~~~i~~l~--~~~~~~m~~na~~~a~~~~~~~f~ 326 (339)
T 3rhz_A 255 YKLGSFLAAGIPVIVQEGI-ANQELI---ENNG--LGWIVKDVEEAIMKVKNVN--EDEYIELVKNVRSFNPILRKGFFT 326 (339)
T ss_dssp HHHHHHHHHTCCEEEETTC-TTTHHH---HHHT--CEEEESSHHHHHHHHHHCC--HHHHHHHHHHHHHHTHHHHTTHHH
T ss_pred HHHHHHHHcCCCEEEccCh-hHHHHH---HhCC--eEEEeCCHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhccHHH
Confidence 5689999999999987654 444444 3445 3555678999999999874 677999999999987666 44444
Q ss_pred HHH
Q 043830 232 ANV 234 (248)
Q Consensus 232 ~~~ 234 (248)
++.
T Consensus 327 k~~ 329 (339)
T 3rhz_A 327 RRL 329 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 35
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.49 E-value=2.2e-13 Score=120.04 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=82.7
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~ 197 (248)
+|.+.+...++ ++|+.||+++. .+ |+.+++|||++|+|+|+.+..++.....+.+.+.|.|..+..+ |+++
T Consensus 284 ~v~~~~~~~~~-~~l~~ad~~v~-----~~-G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~ 356 (430)
T 2iyf_A 284 NVEVHDWVPQL-AILRQADLFVT-----HA-GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADL 356 (430)
T ss_dssp TEEEESSCCHH-HHHTTCSEEEE-----CC-CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHH
T ss_pred CeEEEecCCHH-HHhhccCEEEE-----CC-CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHH
Confidence 56777766666 89999999543 22 3467999999999999987643333345566677765555444 8999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHV 242 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (248)
|+++|.++++|++.+++|++.+++.... ..++++.+.+.+++
T Consensus 357 l~~~i~~ll~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~ 398 (430)
T 2iyf_A 357 LRETALALVDDPEVARRLRRIQAEMAQE---GGTRRAADLIEAEL 398 (430)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHH---CHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHh
Confidence 9999999999999999999998887654 34455555555544
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.47 E-value=1.2e-13 Score=120.17 Aligned_cols=152 Identities=12% Similarity=0.121 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEc
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIG 143 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~ 143 (248)
..+++++.+. ++.|+++++++++++.. +.+. ++. .+|.+.+.. +...++..||+++.
T Consensus 236 ~~~~~~~~~~-~~~p~~~~v~~~~~~~~-~~l~------~~~-------------~~v~~~~~~-~~~~ll~~ad~~v~- 292 (391)
T 3tsa_A 236 APLLRAVAAA-TELPGVEAVIAVPPEHR-ALLT------DLP-------------DNARIAESV-PLNLFLRTCELVIC- 292 (391)
T ss_dssp HHHHHHHHHH-HTSTTEEEEEECCGGGG-GGCT------TCC-------------TTEEECCSC-CGGGTGGGCSEEEE-
T ss_pred HHHHHHHHHh-ccCCCeEEEEEECCcch-hhcc------cCC-------------CCEEEeccC-CHHHHHhhCCEEEe-
Confidence 4567777777 67789999998876532 2221 111 245555543 34567899999653
Q ss_pred CccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc----CCHHHHHHHHHHhhhCHHHHHHHHHHH
Q 043830 144 GSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV----SGKSELEEALSQLFSDARVLEAQQMAA 219 (248)
Q Consensus 144 ~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~----~~~~~l~~~i~~ll~~~~~~~~~~~~~ 219 (248)
++ |+.+++|||++|+|+|+.+..++-....+.+.+.|.|..+.. .|+++|++++.++++|++.+++|++.+
T Consensus 293 ----~~-G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~ 367 (391)
T 3tsa_A 293 ----AG-GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLS 367 (391)
T ss_dssp ----CC-CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHH
T ss_pred ----CC-CHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 43 346899999999999997765555566677777787666655 579999999999999999999999988
Q ss_pred HHHHHHhchhHHHHHHHHHHHHhhhhh
Q 043830 220 KQAFCALSSGIVANVWNLLNFHVFRRA 246 (248)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (248)
++... ...++++.+.+.+++..|+
T Consensus 368 ~~~~~---~~~~~~~~~~i~~~~~~~~ 391 (391)
T 3tsa_A 368 DEITA---MPHPAALVRTLENTAAIRA 391 (391)
T ss_dssp HHHHT---SCCHHHHHHHHHHC-----
T ss_pred HHHHc---CCCHHHHHHHHHHHHhccC
Confidence 77653 3556778888888777663
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.39 E-value=4.5e-12 Score=110.26 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=89.9
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCC-CCChHHHHHHHHhcCCceEEEcC--CHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPH-IGHYSNMVSAMQRLNPKSVLQVS--GKS 196 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~-~~~~~~~~~~~~~~g~g~~~~~~--~~~ 196 (248)
+|.+.+...+. ++|+.||+++. .+ |..+++|||++|+|+|+.+. .++.....+.+.+.|.|..+..+ +++
T Consensus 282 ~v~~~~~~~~~-~ll~~ad~~v~-----~~-G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~ 354 (402)
T 3ia7_A 282 NVEAHQWIPFH-SVLAHARACLT-----HG-TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPA 354 (402)
T ss_dssp TEEEESCCCHH-HHHTTEEEEEE-----CC-CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHH
T ss_pred cEEEecCCCHH-HHHhhCCEEEE-----CC-CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHH
Confidence 56777766666 99999999654 32 33678999999999998776 55555667777777765555544 899
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhhh
Q 043830 197 ELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFRRA 246 (248)
Q Consensus 197 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (248)
+|++++.++++|++.+++|++.+++... ...++++.+.+.+++.++.
T Consensus 355 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~ 401 (402)
T 3ia7_A 355 SIREAVERLAADSAVRERVRRMQRDILS---SGGPARAADEVEAYLGRVA 401 (402)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHhh---CChHHHHHHHHHHHHhhcC
Confidence 9999999999999999999888877543 4677788888888877654
No 38
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.39 E-value=1e-12 Score=114.66 Aligned_cols=141 Identities=9% Similarity=0.083 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
+..+++++.. . +++++++++++.. +.+. . +. .+|.+.+.. ++..+|..||+++.
T Consensus 253 ~~~~~~al~~---~--~~~~v~~~~~~~~-~~l~----~--~~-------------~~v~~~~~~-~~~~ll~~ad~~v~ 306 (398)
T 4fzr_A 253 LQALSQELPK---L--GFEVVVAVSDKLA-QTLQ----P--LP-------------EGVLAAGQF-PLSAIMPACDVVVH 306 (398)
T ss_dssp HHHHHHHGGG---G--TCEEEECCCC---------------CC-------------TTEEEESCC-CHHHHGGGCSEEEE
T ss_pred HHHHHHHHHh---C--CCEEEEEeCCcch-hhhc----c--CC-------------CcEEEeCcC-CHHHHHhhCCEEEe
Confidence 4455555432 2 5788888776542 2322 1 11 356777765 68899999999653
Q ss_pred cCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 043830 143 GGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSELEEALSQLFSDARVLEAQQMAAK 220 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~~ 220 (248)
++ |+.+++|||++|+|+|+.|..++..+..+.+.+.|.|..+..+ |+++|+++|.++++|++.+++|++.++
T Consensus 307 -----~g-G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~ 380 (398)
T 4fzr_A 307 -----HG-GHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAA 380 (398)
T ss_dssp -----CC-CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred -----cC-CHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 43 4577999999999999977655555666777777766665554 889999999999999999999999988
Q ss_pred HHHHHhchhHHHHHHHHH
Q 043830 221 QAFCALSSGIVANVWNLL 238 (248)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~ 238 (248)
++... ...+++++.+
T Consensus 381 ~~~~~---~~~~~~~~~l 395 (398)
T 4fzr_A 381 EMATL---PTPADIVRLI 395 (398)
T ss_dssp HHTTS---CCHHHHHHHH
T ss_pred HHHcC---CCHHHHHHHH
Confidence 76543 4445555544
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.33 E-value=2.4e-11 Score=106.38 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=86.0
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~ 197 (248)
+|.+.+..... .+|+.||+++. .+ |..+++|||++|+|+|+.|..++-....+.+.+.|.|..+..+ ++++
T Consensus 298 ~v~~~~~~~~~-~ll~~ad~~v~-----~~-G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~ 370 (415)
T 3rsc_A 298 NVEAHRWVPHV-KVLEQATVCVT-----HG-GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDT 370 (415)
T ss_dssp TEEEESCCCHH-HHHHHEEEEEE-----SC-CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHH
T ss_pred cEEEEecCCHH-HHHhhCCEEEE-----CC-cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHH
Confidence 56676765555 89999999654 22 3357899999999999977655555666777777765555444 8999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVF 243 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (248)
|++++.++++|++.+++|.+.+++... ...++++++.+.+++.
T Consensus 371 l~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 371 LLAAVGAVAADPALLARVEAMRGHVRR---AGGAARAADAVEAYLA 413 (415)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhh
Confidence 999999999999999999888877643 3566777777777664
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.30 E-value=2.8e-11 Score=104.95 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=81.7
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~ 197 (248)
+|.+ +.. +..++|..||+++. .+ |+.+++|||++|+|+|+.+..++-....+.+.+.|.|..+..+ ++++
T Consensus 265 ~v~~-~~~-~~~~~l~~~d~~v~-----~~-G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~ 336 (384)
T 2p6p_A 265 QARV-GWT-PLDVVAPTCDLLVH-----HA-GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEA 336 (384)
T ss_dssp TSEE-ECC-CHHHHGGGCSEEEE-----CS-CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHH
T ss_pred ceEE-cCC-CHHHHHhhCCEEEe-----CC-cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHH
Confidence 3445 544 46788999999654 33 4568999999999999987643333455556667765555443 7999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVF 243 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (248)
|+++|.++++|++.+++|++.++.... ....+++++.+.+++-
T Consensus 337 l~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 337 IADSCQELQAKDTYARRAQDLSREISG---MPLPATVVTALEQLAH 379 (384)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHT---SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHhh
Confidence 999999999999999999888876543 3566677777776653
No 41
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.28 E-value=3.7e-11 Score=109.38 Aligned_cols=169 Identities=9% Similarity=-0.003 Sum_probs=113.1
Q ss_pred CCcchHHHHHHHHHHHHHhCCCeEEE--EecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHH
Q 043830 58 IHRGEEKVMLAVHKVLMQKNPNLVTI--IVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQL 133 (248)
Q Consensus 58 ~~~~~~~~ll~a~~~l~~~~~~~~lv--ivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~ 133 (248)
+..|....+++++.++.++.|+..++ ++|.++.....+.+.+.+.|+.. ++.|.+. ..+...+
T Consensus 449 ~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~-------------Rv~F~g~~p~~e~la~ 515 (631)
T 3q3e_A 449 TTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLGD-------------SATAHPHSPYHQYLRI 515 (631)
T ss_dssp CSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHGG-------------GEEEECCCCHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCCc-------------cEEEcCCCCHHHHHHH
Confidence 34455578999999999999987654 36743222244555566777753 4555553 4577899
Q ss_pred HhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHH--HHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHH
Q 043830 134 YKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMV--SAMQRLNPKSVLQVSGKSELEEALSQLFSDARV 211 (248)
Q Consensus 134 y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~--~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~ 211 (248)
|+.+|+ ++.++-+ + ||.+.+|||+||+|||+-+. ..+...+ ..+...|..-.+...|.++.++...+|.+|++.
T Consensus 516 y~~aDI-fLDpfpy-~-GgtTtlEALwmGVPVVTl~G-~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~ 591 (631)
T 3q3e_A 516 LHNCDM-MVNPFPF-G-NTNGIIDMVTLGLVGVCKTG-AEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQE 591 (631)
T ss_dssp HHTCSE-EECCSSS-C-CSHHHHHHHHTTCCEEEECC-SSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHH
T ss_pred HhcCcE-EEeCCcc-c-CChHHHHHHHcCCCEEeccC-CcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHH
Confidence 999999 4556544 3 58889999999999998543 3454422 223333321112458999999999999999999
Q ss_pred HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHhh
Q 043830 212 LEAQQMAAKQAFCA--LSSGIVANVWNLLNFHVF 243 (248)
Q Consensus 212 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 243 (248)
+++|+++.++.... .+++.++++-+.|.+++.
T Consensus 592 l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~ 625 (631)
T 3q3e_A 592 RLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLN 625 (631)
T ss_dssp HHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHH
Confidence 99999998877533 244445555555555443
No 42
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.9e-10 Score=88.54 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=65.5
Q ss_pred cEEEEcChhHHHHHH--hhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CH
Q 043830 120 NVYVVDTLGELRQLY--KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GK 195 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y--~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~ 195 (248)
+|.+.+.... ..++ ..||+++. .+ |+.+++|||++|+|+|+.+..++.....+.+.+.|.|..+..+ ++
T Consensus 69 ~v~~~~~~~~-~~~l~~~~ad~~I~-----~~-G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~ 141 (170)
T 2o6l_A 69 NTRLYKWIPQ-NDLLGHPKTRAFIT-----HG-GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSS 141 (170)
T ss_dssp TEEEESSCCH-HHHHTSTTEEEEEE-----CC-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCH
T ss_pred cEEEecCCCH-HHHhcCCCcCEEEE-----cC-CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCH
Confidence 4556664433 4455 88999653 33 4678999999999999988654444556667766755554444 89
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHH
Q 043830 196 SELEEALSQLFSDARVLEAQQMA 218 (248)
Q Consensus 196 ~~l~~~i~~ll~~~~~~~~~~~~ 218 (248)
++|+++|.++++|++.++.+.+.
T Consensus 142 ~~l~~~i~~ll~~~~~~~~a~~~ 164 (170)
T 2o6l_A 142 TDLLNALKRVINDPSYKENVMKL 164 (170)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999866555543
No 43
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.24 E-value=3.2e-11 Score=105.23 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcC
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGG 144 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~ 144 (248)
.+.+++..+.+ .+++++++++++.. +.+. ++. .+|.+.+.. ++.++|..||+++.
T Consensus 251 ~~~~~~~~l~~--~~~~~v~~~g~~~~-~~l~------~~~-------------~~v~~~~~~-~~~~ll~~ad~~v~-- 305 (398)
T 3oti_A 251 AVEPIIAAAGE--VDADFVLALGDLDI-SPLG------TLP-------------RNVRAVGWT-PLHTLLRTCTAVVH-- 305 (398)
T ss_dssp GHHHHHHHHHT--SSSEEEEECTTSCC-GGGC------SCC-------------TTEEEESSC-CHHHHHTTCSEEEE--
T ss_pred HHHHHHHHHHc--CCCEEEEEECCcCh-hhhc------cCC-------------CcEEEEccC-CHHHHHhhCCEEEE--
Confidence 34444444433 26788888876553 2221 111 357777766 78899999999543
Q ss_pred ccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHH--HHHHhcCCceEEEcC--CHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 043830 145 SFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMV--SAMQRLNPKSVLQVS--GKSELEEALSQLFSDARVLEAQQMAAK 220 (248)
Q Consensus 145 s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~--~~~~~~g~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~~~ 220 (248)
.+ |+.+++|||++|+|+|+.|..++-.... +.+.+.|.|..+... +++.|+ ++++|++.+++|++.++
T Consensus 306 ---~~-G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~ 377 (398)
T 3oti_A 306 ---HG-GGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVRE 377 (398)
T ss_dssp ---CC-CHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHH
T ss_pred ---CC-CHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHH
Confidence 43 3568999999999999954422222233 445566766665554 566665 88999999999999888
Q ss_pred HHHHHhchhHHHHHHHHHHHHh
Q 043830 221 QAFCALSSGIVANVWNLLNFHV 242 (248)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~ 242 (248)
+.... ..++++.+.+.+++
T Consensus 378 ~~~~~---~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 378 EMVAL---PTPAETVRRIVERI 396 (398)
T ss_dssp HHHTS---CCHHHHHHHHHHHH
T ss_pred HHHhC---CCHHHHHHHHHHHh
Confidence 86543 44566666666654
No 44
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.22 E-value=3.4e-11 Score=106.61 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=84.6
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~ 197 (248)
+|.+.+.... .++|..||+++. .+ |..++.|||++|+|+|+.|..++-....+.+.+.|.|..+..+ ++++
T Consensus 320 ~v~~~~~~~~-~~ll~~ad~~V~-----~~-G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 392 (441)
T 2yjn_A 320 NVRTVGFVPM-HALLPTCAATVH-----HG-GPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQ 392 (441)
T ss_dssp SEEECCSCCH-HHHGGGCSEEEE-----CC-CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHH
T ss_pred CEEEecCCCH-HHHHhhCCEEEE-----CC-CHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHH
Confidence 5666665544 678999999654 33 4568999999999999987643333455667777765555443 8999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFRR 245 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 245 (248)
|+++|.++++|++.+++|.+.+++... ...++++.+.+.+++.++
T Consensus 393 l~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~ 437 (441)
T 2yjn_A 393 LRESVKRVLDDPAHRAGAARMRDDMLA---EPSPAEVVGICEELAAGR 437 (441)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHT---SCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999888877543 355667777777766543
No 45
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.15 E-value=7.8e-10 Score=97.19 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=82.6
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~ 197 (248)
+|.+.+....+ ++|+.||+++. .+ |..+++||+++|+|+|+.+..++.....+.+.+.|.|..+..+ ++++
T Consensus 306 ~v~~~~~~~~~-~~l~~~d~~v~-----~~-G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 378 (424)
T 2iya_A 306 NVEVHQWVPQL-DILTKASAFIT-----HA-GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEK 378 (424)
T ss_dssp TEEEESSCCHH-HHHTTCSEEEE-----CC-CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHH
T ss_pred CeEEecCCCHH-HHHhhCCEEEE-----CC-chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHH
Confidence 56676765566 79999998543 32 3467999999999999987653333445566666754444333 8999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVF 243 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (248)
|+++|.++++|++.++++.+.+++... ....+++.+.+.+++.
T Consensus 379 l~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 379 LREAVLAVASDPGVAERLAAVRQEIRE---AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHh
Confidence 999999999999998888887766532 3566777777777664
No 46
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.94 E-value=3.1e-08 Score=86.64 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=82.2
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~ 197 (248)
+|.+.+.. ....++..||+++. .| |..++.||+++|+|+|+.|..++-......+.+.|.|..+... +++.
T Consensus 269 ~v~~~~~~-~~~~ll~~~d~~v~-----~g-G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~ 341 (404)
T 3h4t_A 269 DCLVVGEV-NHQVLFGRVAAVVH-----HG-GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVES 341 (404)
T ss_dssp TEEEESSC-CHHHHGGGSSEEEE-----CC-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHH
T ss_pred CEEEecCC-CHHHHHhhCcEEEE-----CC-cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHH
Confidence 56666654 34788999999654 32 3367999999999999987766655666777777765544332 8999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (248)
|.+++.++++ ++.+++|.+.+.... . ..++++.+.+.+++..
T Consensus 342 l~~ai~~ll~-~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~~~~ 383 (404)
T 3h4t_A 342 LSAALATALT-PGIRARAAAVAGTIR---T-DGTTVAAKLLLEAISR 383 (404)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHTTCC---C-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHh---h-hHHHHHHHHHHHHHhh
Confidence 9999999998 887777776655432 3 6677777777776654
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.88 E-value=3.4e-08 Score=86.58 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=81.5
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcC--CHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS--GKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~ 197 (248)
+|.+.+.... .++|..||+++. .+ |..+++||+++|+|+|+.|..++-....+.+.+.|.|..+..+ +.++
T Consensus 286 ~v~~~~~~~~-~~~l~~~d~~v~-----~~-G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 358 (415)
T 1iir_A 286 DCFAIGEVNH-QVLFGRVAAVIH-----HG-GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDS 358 (415)
T ss_dssp GEEECSSCCH-HHHGGGSSEEEE-----CC-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHH
T ss_pred CEEEeCcCCh-HHHHhhCCEEEe-----CC-ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHH
Confidence 4555554433 467899999654 32 3467999999999999987655544556667677755544332 8999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (248)
|+++|.++ +|++.++++.+.+++.. .....+++.+.+.+++..
T Consensus 359 l~~~i~~l-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 359 LSAALATA-LTPETHARATAVAGTIR---TDGAAVAARLLLDAVSRE 401 (415)
T ss_dssp HHHHHHHH-TSHHHHHHHHHHHHHSC---SCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-cCHHHHHHHHHHHHHHh---hcChHHHHHHHHHHHHhc
Confidence 99999999 99988888777665532 356777888888777654
No 48
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.79 E-value=1.7e-07 Score=82.14 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=79.4
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEc--CCHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV--SGKSE 197 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~--~~~~~ 197 (248)
++.+.+.. ...++|..||+++. .+ |..++.||+++|+|+|+-|..++-....+.+.+.|.|..+.. -+.++
T Consensus 287 ~v~~~~~~-~~~~ll~~~d~~v~-----~~-G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 359 (416)
T 1rrv_A 287 DCFAIDEV-NFQALFRRVAAVIH-----HG-SAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFES 359 (416)
T ss_dssp TEEEESSC-CHHHHGGGSSEEEE-----CC-CHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHH
T ss_pred CEEEeccC-ChHHHhccCCEEEe-----cC-ChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHH
Confidence 45666654 35778999999654 33 446899999999999997765454455666777776554433 38999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHhhh
Q 043830 198 LEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLL-NFHVFR 244 (248)
Q Consensus 198 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 244 (248)
|+++|.++ +|++.+++|++.++... ..... ++++.+ ++++..
T Consensus 360 l~~~i~~l-~~~~~~~~~~~~~~~~~---~~~~~-~~~~~i~e~~~~~ 402 (416)
T 1rrv_A 360 LSAALTTV-LAPETRARAEAVAGMVL---TDGAA-AAADLVLAAVGRE 402 (416)
T ss_dssp HHHHHHHH-TSHHHHHHHHHHTTTCC---CCHHH-HHHHHHHHHHHC-
T ss_pred HHHHHHHh-hCHHHHHHHHHHHHHHh---hcCcH-HHHHHHHHHHhcc
Confidence 99999999 99998888877665432 23444 777777 766543
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.64 E-value=9.5e-08 Score=82.83 Aligned_cols=110 Identities=21% Similarity=0.108 Sum_probs=75.6
Q ss_pred cEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHH
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELE 199 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~ 199 (248)
++.+.+.. ...++|..+|+++. .+ |..++.||+++|+|+|+.|..++-....+.+.+.| +++...+.+.++
T Consensus 289 ~v~~~~~~-p~~~lL~~~~~~v~-----h~-G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G--~g~~l~~~~~~~ 359 (400)
T 4amg_A 289 NVRVVEWI-PLGALLETCDAIIH-----HG-GSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLG--IGFDAEAGSLGA 359 (400)
T ss_dssp TEEEECCC-CHHHHHTTCSEEEE-----CC-CHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHT--SEEECCTTTCSH
T ss_pred CEEEEeec-CHHHHhhhhhheec-----cC-CccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCC--CEEEcCCCCchH
Confidence 45565543 46778999999543 33 45679999999999999776555555566676666 566666777788
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 043830 200 EALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFH 241 (248)
Q Consensus 200 ~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (248)
++|.++|+||..|+++.+.+++... .....++.+.++++
T Consensus 360 ~al~~lL~d~~~r~~a~~l~~~~~~---~~~~~~~a~~le~l 398 (400)
T 4amg_A 360 EQCRRLLDDAGLREAALRVRQEMSE---MPPPAETAAXLVAL 398 (400)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHT---SCCHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHh
Confidence 9999999999988777666655432 22345666766664
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.62 E-value=1.6e-06 Score=81.46 Aligned_cols=148 Identities=15% Similarity=0.090 Sum_probs=105.6
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC--hhHHHHHHhhC
Q 043830 60 RGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT--LGELRQLYKLT 137 (248)
Q Consensus 60 ~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--~~~l~~~y~~a 137 (248)
.|-...+++.+.+|.++.|+.+|++..........+.+.+++.|+. ..+|.|.+. ..+.-..|+.+
T Consensus 533 ~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~------------~~r~~f~~~~~~~~~l~~~~~~ 600 (723)
T 4gyw_A 533 YKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLP------------QNRIIFSPVAPKEEHVRRGQLA 600 (723)
T ss_dssp GGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCC------------GGGEEEEECCCHHHHHHHGGGC
T ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCC------------cCeEEECCCCCHHHHHHHhCCC
Confidence 3544578899999999999999988876555446788888888885 246777763 45677889999
Q ss_pred CEEEEcCccCCCC-CCCCHHHHHhhCCcEEECCCCCChHH--HHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHH
Q 043830 138 PIAVIGGSFLPGL-AGHNISEAAAAGCAVLTGPHIGHYSN--MVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEA 214 (248)
Q Consensus 138 d~~~v~~s~~e~~-gg~~~lEA~a~G~Pvi~~~~~~~~~~--~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~ 214 (248)
|++ +- ++ + + ||.|.+||+.+|+|||+-+ +..+.. ....+...|..- +.+.|.++-.+...+|.+|++.+.+
T Consensus 601 Di~-LD-t~-p-~~g~tT~~eal~~GvPvvt~~-g~~~~sR~~~s~l~~~gl~e-~ia~~~~~Y~~~a~~la~d~~~l~~ 674 (723)
T 4gyw_A 601 DVC-LD-TP-L-CNGHTTGMDVLWAGTPMVTMP-GETLASRVAASQLTCLGCLE-LIAKNRQEYEDIAVKLGTDLEYLKK 674 (723)
T ss_dssp SEE-EC-CS-S-SCCSHHHHHHHHTTCCEEBCC-CSSGGGTHHHHHHHHHTCGG-GBCSSHHHHHHHHHHHHHCHHHHHH
T ss_pred eEE-eC-CC-C-cCCHHHHHHHHHcCCCEEEcc-CCCccHhHHHHHHHHcCCcc-cccCCHHHHHHHHHHHhcCHHHHHH
Confidence 995 42 22 2 2 4556899999999999733 222222 223333333211 2458999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043830 215 QQMAAKQAFCA 225 (248)
Q Consensus 215 ~~~~~~~~~~~ 225 (248)
+++.-++....
T Consensus 675 lr~~l~~~~~~ 685 (723)
T 4gyw_A 675 VRGKVWKQRIS 685 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 98887776654
No 51
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.28 E-value=0.00011 Score=65.54 Aligned_cols=116 Identities=10% Similarity=0.063 Sum_probs=74.2
Q ss_pred cEEEEcChhHHHHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHH-hcCCceEEEc-CCHH
Q 043830 120 NVYVVDTLGELRQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQ-RLNPKSVLQV-SGKS 196 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~-~~g~g~~~~~-~~~~ 196 (248)
++.+.+....+ .+++.+++ +||. -+ |..+++||+++|+|+|+-|..++-......+. +.|.|..+.. -+.+
T Consensus 354 ~~~v~~~~pq~-~~L~h~~~~~~vt----h~-G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~ 427 (482)
T 2pq6_A 354 RGLIASWCPQD-KVLNHPSIGGFLT----HC-GWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKRE 427 (482)
T ss_dssp TEEEESCCCHH-HHHTSTTEEEEEE----CC-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHH
T ss_pred CEEEEeecCHH-HHhcCCCCCEEEe----cC-CcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHH
Confidence 44555544344 57877775 2341 32 44669999999999999887655555555565 4564433321 2899
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-----chhHHHHHHHHHHHHh
Q 043830 197 ELEEALSQLFSDARVLEAQQMAAKQAFCAL-----SSGIVANVWNLLNFHV 242 (248)
Q Consensus 197 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 242 (248)
+|.++|.++++|++ .++|++++++..... ..+...+.++.+-+.+
T Consensus 428 ~l~~~i~~ll~~~~-~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~~~ 477 (482)
T 2pq6_A 428 ELAKLINEVIAGDK-GKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477 (482)
T ss_dssp HHHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999986 466777777655443 1355555555554433
No 52
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.23 E-value=7.3e-05 Score=66.37 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=75.6
Q ss_pred cEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEEc--CC
Q 043830 120 NVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQV--SG 194 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~~--~~ 194 (248)
++++.+.... ..+++ .+|+++. -+ |..+++||+++|+|+|+-|..++-......+.+. |.|..+.. -+
T Consensus 326 ~~~v~~w~pq-~~vL~h~~~~~fvt-----h~-G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~ 398 (456)
T 2c1x_A 326 YGMVVPWAPQ-AEVLAHEAVGAFVT-----HC-GWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFT 398 (456)
T ss_dssp TEEEESCCCH-HHHHTSTTEEEEEE-----CC-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCC
T ss_pred ceEEecCCCH-HHHhcCCcCCEEEe-----cC-CcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcC
Confidence 4555554333 36788 5677443 33 4567999999999999988765655666677776 75443322 27
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-----chhHHHHHHHHHHHHhh
Q 043830 195 KSELEEALSQLFSDARVLEAQQMAAKQAFCAL-----SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 195 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 243 (248)
.++|.++|.++++|++ .++|++++++..... ..+++.+.++.+-+.+.
T Consensus 399 ~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~ 451 (456)
T 2c1x_A 399 KSGLMSCFDQILSQEK-GKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 451 (456)
T ss_dssp HHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 8999999999999986 566666666654433 14555555555444443
No 53
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.16 E-value=8e-06 Score=67.96 Aligned_cols=87 Identities=9% Similarity=0.062 Sum_probs=60.1
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHHh
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAAA 160 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a 160 (248)
..||.|.+....+++++...+. .++.+.+...+|+++|+.||+++. . ||.++.|+++
T Consensus 186 i~vv~G~~~~~~~~l~~~~~~~----------------~~v~v~~~~~~m~~~m~~aDlvI~-----~--gG~T~~E~~~ 242 (282)
T 3hbm_A 186 ISIATSSSNPNLKKLQKFAKLH----------------NNIRLFIDHENIAKLMNESNKLII-----S--ASSLVNEALL 242 (282)
T ss_dssp EEEEECTTCTTHHHHHHHHHTC----------------SSEEEEESCSCHHHHHHTEEEEEE-----E--SSHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHhhC----------------CCEEEEeCHHHHHHHHHHCCEEEE-----C--CcHHHHHHHH
Confidence 3466787766557777765432 134455556789999999999654 2 4678999999
Q ss_pred hCCcEEECCCCCChHHHHHHHHhcCCceEEEc
Q 043830 161 AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQV 192 (248)
Q Consensus 161 ~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~ 192 (248)
+|+|+|+-|...+-.+..+.+.+.| ++...
T Consensus 243 ~g~P~i~ip~~~~Q~~nA~~l~~~G--~~~~~ 272 (282)
T 3hbm_A 243 LKANFKAICYVKNQESTATWLAKKG--YEVEY 272 (282)
T ss_dssp TTCCEEEECCSGGGHHHHHHHHHTT--CEEEC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHCC--CEEEc
Confidence 9999998665434445677777777 44443
No 54
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.02 E-value=0.00033 Score=62.08 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=71.4
Q ss_pred cEEEEcChhHHHHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhc-CCceEEEc--CCH
Q 043830 120 NVYVVDTLGELRQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRL-NPKSVLQV--SGK 195 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~-g~g~~~~~--~~~ 195 (248)
++++.+.... ..+++.+++ +||. -+ |-.+++||+++|+|+|+-|..++-......+.+. |.|..+.. -+.
T Consensus 328 ~~~vv~w~Pq-~~vL~h~~v~~fvt----H~-G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~ 401 (454)
T 3hbf_A 328 KGKIVAWAPQ-VEILKHSSVGVFLT----HS-GWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTK 401 (454)
T ss_dssp TEEEESSCCH-HHHHHSTTEEEEEE----CC-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCH
T ss_pred ceEEEeeCCH-HHHHhhcCcCeEEe----cC-CcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCH
Confidence 4555554333 578999993 1341 22 3356899999999999988665655555666654 64443332 378
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-----chhHHHHHHHHHHH
Q 043830 196 SELEEALSQLFSDARVLEAQQMAAKQAFCAL-----SSGIVANVWNLLNF 240 (248)
Q Consensus 196 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~ 240 (248)
++|.++|.++++|+ ..++|++++++..... ..+++.+.++.+-+
T Consensus 402 ~~l~~av~~ll~~~-~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~ 450 (454)
T 3hbf_A 402 ESIKKALELTMSSE-KGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450 (454)
T ss_dssp HHHHHHHHHHHSSH-HHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 99999999999885 2345566655544332 14555555554443
No 55
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.01 E-value=0.00023 Score=63.27 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=68.2
Q ss_pred EEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHH-HhcCCceEE-E-----
Q 043830 121 VYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAM-QRLNPKSVL-Q----- 191 (248)
Q Consensus 121 v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~-~~~g~g~~~-~----- 191 (248)
+++.+....+ .+|+ .+|+++. -+ |..+++||+++|+|+|+-|..++-......+ .+.|.|..+ .
T Consensus 334 ~~v~~w~pq~-~vL~h~~~~~fvt-----h~-G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~ 406 (463)
T 2acv_A 334 GMICGWAPQV-EVLAHKAIGGFVS-----HC-GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKG 406 (463)
T ss_dssp EEEESSCCHH-HHHHSTTEEEEEE-----CC-CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTT
T ss_pred EEEEccCCHH-HHhCCCccCeEEe-----cC-CchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCC
Confidence 3444433333 5676 5666443 33 4567999999999999987665555556664 566654443 1
Q ss_pred --cCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHh
Q 043830 192 --VSGKSELEEALSQLFS-DARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHV 242 (248)
Q Consensus 192 --~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 242 (248)
.-+.++|.++|.++++ +++.++...+.+....... ..+++.+.++.+-+.+
T Consensus 407 ~~~~~~~~l~~ai~~ll~~~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~~~ 461 (463)
T 2acv_A 407 SDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461 (463)
T ss_dssp CCCCCHHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 1278999999999997 3455544444333322211 2465666555554433
No 56
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=97.96 E-value=2.9e-05 Score=72.92 Aligned_cols=211 Identities=10% Similarity=0.050 Sum_probs=117.7
Q ss_pred CHHHHHHHHH-cCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcC---CCeEEEEeCCCcchH-----------HH
Q 043830 1 STLQAIRFQL-LEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLA---HRQVWMASSIHRGEE-----------KV 65 (248)
Q Consensus 1 s~~~~~~l~~-~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~---~~~v~l~~~~~~~~~-----------~~ 65 (248)
|+.+.+.+.+ .++++++|.++|.|.+|...... ......+.+++.++ +++++|++-+|.... ..
T Consensus 486 s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~-~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~~~~~~ 564 (729)
T 3l7i_A 486 NRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRA-NDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYLFELKI 564 (729)
T ss_dssp SHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHST-TCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSSCCCCTT
T ss_pred CHHHHHHHHHHhCCCcceEEEcCCCchHHHhccc-chHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccccccccchhh
Confidence 4556666755 78988899999999888654111 11233566777774 678999987764321 11
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCc
Q 043830 66 MLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 66 ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s 145 (248)
-++.+.+.. ..+..+++-++ |. +.. ...+.. -...++-.....++.++|..||+++.
T Consensus 565 ~~~~l~~~l--~~~~~li~r~H-p~----~~~---~~~~~~----------~~~~~~~~~~~~di~~ll~~aD~lIT--- 621 (729)
T 3l7i_A 565 DLDNLYKEL--GDDYVILLRMH-YL----ISN---ALDLSG----------YENFAIDVSNYNDVSELFLISDCLIT--- 621 (729)
T ss_dssp CHHHHHHHH--TTTEEEEECCC-HH----HHT---TCCCTT----------CTTTEEECTTCSCHHHHHHTCSEEEE---
T ss_pred HHHHHHHHc--CCCeEEEEecC-cc----hhc---cccccc----------cCCcEEeCCCCcCHHHHHHHhCEEEe---
Confidence 234443322 24676666565 42 111 111110 01223333334578899999999654
Q ss_pred cCCCCCCCCHHHHHhhCCcEEEC-CCCCChH----HHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 043830 146 FLPGLAGHNISEAAAAGCAVLTG-PHIGHYS----NMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAK 220 (248)
Q Consensus 146 ~~e~~gg~~~lEA~a~G~Pvi~~-~~~~~~~----~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 220 (248)
+ ..-.++|.+.+++|||.- ++...+. +.+-...+.-. +-.+.|.++|.++|.....++....+.. .
T Consensus 622 --D--ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~p--g~~~~~~~eL~~~i~~~~~~~~~~~~~~---~ 692 (729)
T 3l7i_A 622 --D--YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLP--GPIYTEPYGLAKELKNLDKVQQQYQEKI---D 692 (729)
T ss_dssp --S--SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSS--SCEESSHHHHHHHHTTHHHHHHHTHHHH---H
T ss_pred --e--chHHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCC--CCeECCHHHHHHHHhhhhccchhHHHHH---H
Confidence 2 123478999999999973 2221110 00000111111 1235799999999987765433322222 2
Q ss_pred HHHHHh----chhHHHHHHHHHHHHhhh
Q 043830 221 QAFCAL----SSGIVANVWNLLNFHVFR 244 (248)
Q Consensus 221 ~~~~~~----~~~~~~~~l~~~~~~~~~ 244 (248)
++...+ ...+++|+++.+.+....
T Consensus 693 ~~~~~~~~~~dg~as~ri~~~i~~~~~~ 720 (729)
T 3l7i_A 693 AFYDRFCSVDNGKASQYIGDLIHKDIKE 720 (729)
T ss_dssp HHHHHHSTTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccCChHHHHHHHHHHhcCcC
Confidence 233333 368999999988765543
No 57
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.83 E-value=3.6e-05 Score=61.74 Aligned_cols=77 Identities=6% Similarity=0.019 Sum_probs=54.6
Q ss_pred cEEEEcChhHHHHHHh-hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCCC---CChH-HHHHHHHhcCCceEEEcCC
Q 043830 120 NVYVVDTLGELRQLYK-LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPHI---GHYS-NMVSAMQRLNPKSVLQVSG 194 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~-~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~---~~~~-~~~~~~~~~g~g~~~~~~~ 194 (248)
++...++..+|..+|+ .||+++. .+ |..++.|++++|+|.|+-|.. .+.+ +..+.+.+.|.+..+ +
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIs-----ha-GagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~ 185 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVIS-----HA-GTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---A 185 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEE-----SS-CHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---C
T ss_pred eEEEeeccchHHHHHHhcCCEEEE-----CC-cHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---C
Confidence 3444455679999999 9999664 32 456799999999999986653 2323 456667777754432 7
Q ss_pred HHHHHHHHHHh
Q 043830 195 KSELEEALSQL 205 (248)
Q Consensus 195 ~~~l~~~i~~l 205 (248)
++.|.++|.++
T Consensus 186 ~~~L~~~i~~l 196 (224)
T 2jzc_A 186 PTETGLIAGLR 196 (224)
T ss_dssp SCTTTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77888888776
No 58
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.75 E-value=0.00098 Score=59.46 Aligned_cols=81 Identities=9% Similarity=0.102 Sum_probs=55.4
Q ss_pred HHHHhhCCE-EEEcCccCCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHH-HhcCCceEEEc-----CCHHHHHHHHH
Q 043830 131 RQLYKLTPI-AVIGGSFLPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAM-QRLNPKSVLQV-----SGKSELEEALS 203 (248)
Q Consensus 131 ~~~y~~ad~-~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~-~~~g~g~~~~~-----~~~~~l~~~i~ 203 (248)
..+++.+++ +||. -+ |-.+++||+++|+|+|+-|..++-......+ .+.|.|..+.. -+.++|.++|.
T Consensus 350 ~~vL~h~~v~~fvt----Hg-G~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~ 424 (480)
T 2vch_A 350 AQVLAHPSTGGFLT----HC-GWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVK 424 (480)
T ss_dssp HHHHHSTTEEEEEE----CC-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHH
T ss_pred HHHhCCCCcCeEEe----cc-cchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHH
Confidence 378999995 3452 22 3356899999999999988766665566665 46665444432 27899999999
Q ss_pred Hhhh---CHHHHHHHH
Q 043830 204 QLFS---DARVLEAQQ 216 (248)
Q Consensus 204 ~ll~---~~~~~~~~~ 216 (248)
++++ ++..+++..
T Consensus 425 ~vl~~~~~~~~r~~a~ 440 (480)
T 2vch_A 425 GLMEGEEGKGVRNKMK 440 (480)
T ss_dssp HHHTSTHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHH
Confidence 9998 444444433
No 59
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=95.01 E-value=0.47 Score=44.56 Aligned_cols=183 Identities=10% Similarity=0.034 Sum_probs=93.8
Q ss_pred CCeEEEEeCC-C-cchHHH-HHHHHHHHHH--hCC-----CeEEEEecCC-CCCHH--HHHHHHHhcCCceEEecccCCC
Q 043830 49 HRQVWMASSI-H-RGEEKV-MLAVHKVLMQ--KNP-----NLVTIIVPRH-PQHGK--EIAQKLQKEGEVVALRSRHEKL 115 (248)
Q Consensus 49 ~~~v~l~~~~-~-~~~~~~-ll~a~~~l~~--~~~-----~~~lvivG~~-~~~~~--~l~~~~~~~~l~~~~~~~~~~~ 115 (248)
+.+++..+++ + .|.... ++..+..+.+ ..| +..+|+.|.+ |.... .+.+++....- .+.. .+..
T Consensus 525 d~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~--~in~-Dp~~ 601 (796)
T 1l5w_A 525 QAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAD--VINN-DPLV 601 (796)
T ss_dssp TSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHH--HHHT-CTTT
T ss_pred CcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHH--Hhcc-cccc
Confidence 4455656655 3 365555 6666666543 232 4788998864 44422 22222322210 0000 0000
Q ss_pred CCCccEEEE-cCh-hHHHHHHhhCCEEEEcCcc--CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEE
Q 043830 116 MPRTNVYVV-DTL-GELRQLYKLTPIAVIGGSF--LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQ 191 (248)
Q Consensus 116 ~~~~~v~~~-~~~-~~l~~~y~~ad~~~v~~s~--~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~ 191 (248)
...-+|.|+ ++. +--..+|..||+. ..+|. .|. .|.+=+=+|..|.+-|.|-++ ...|+.+... .++|+.+-
T Consensus 602 ~~~lKVvfl~nY~vslA~~I~~gaDv~-l~~S~a~~EA-sGTs~MKam~NGaL~iGtLDG-anvEi~e~vG-~~NgF~FG 677 (796)
T 1l5w_A 602 GDKLKVVFLPDYCVSAAEKLIPAADIS-EQISTAGKEA-SGTGNMKLALNGALTVGTLDG-ANVEIAEKVG-EENIFIFG 677 (796)
T ss_dssp GGGEEEEECSSCCHHHHHHHGGGCSEE-EECCCTTTCC-CCSHHHHHHHTTCEEEECSCT-THHHHHHHHC-GGGSEECS
T ss_pred CCceEEEEECCCCHHHHHHHhhhccee-ecCCCCCCCC-CchHHHHHHHcCCeeecCcCC-eeeehhhccC-CCcEEEec
Confidence 001145544 433 3347789999995 55776 575 478889999999999976554 4445555432 23345554
Q ss_pred cCCHHHHHHHHH-------HhhhCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhh
Q 043830 192 VSGKSELEEALS-------QLFSDARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVF 243 (248)
Q Consensus 192 ~~~~~~l~~~i~-------~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 243 (248)
.+++++.+.-. -.-.+|..++- ..++.. ..+ |... .++.++|++++.
T Consensus 678 -~~~~ev~~l~~~~y~a~~~y~~~~~~~~v-vd~~~~--g~fs~~~~-~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 678 -HTVEQVKAILAKGYDPVKWRKKDKVLDAV-LKELES--GKYSDGDK-HAFDQMLHSIGK 732 (796)
T ss_dssp -CCHHHHHHHHHHCCCHHHHHHHCHHHHHH-HHHHHH--TTTTTTCT-TTTHHHHHHTST
T ss_pred -CCHHHHHHHHHcccCHHHHhhcCHHHHHH-HHHHHc--CCCCCCcH-HHHHHHHHHHhc
Confidence 37777653222 22235543322 222211 112 3333 667777877753
No 60
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=94.91 E-value=0.88 Score=42.89 Aligned_cols=142 Identities=10% Similarity=0.029 Sum_probs=74.9
Q ss_pred CCeEEEEeCCC--cchHHHH-HHHHHHHH--HhCC-----CeEEEEecCC-CCCHHH--HHHHHHhcCCceEEecccCCC
Q 043830 49 HRQVWMASSIH--RGEEKVM-LAVHKVLM--QKNP-----NLVTIIVPRH-PQHGKE--IAQKLQKEGEVVALRSRHEKL 115 (248)
Q Consensus 49 ~~~v~l~~~~~--~~~~~~l-l~a~~~l~--~~~~-----~~~lvivG~~-~~~~~~--l~~~~~~~~l~~~~~~~~~~~ 115 (248)
+.+++..+++. .|....+ +..+..+. +..| +..+|+.|.+ |..... +.+++....- . .......
T Consensus 549 d~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~--~-in~Dp~v 625 (824)
T 2gj4_A 549 NSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGD--V-VNHDPVV 625 (824)
T ss_dssp TSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHH--H-HTTCTTT
T ss_pred CcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHH--H-hccCccc
Confidence 44566666653 3655444 66666553 2344 4689999964 454322 2222222100 0 0000000
Q ss_pred CCCccEEEE-cCh-hHHHHHHhhCCEEEEcCcc--CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEE
Q 043830 116 MPRTNVYVV-DTL-GELRQLYKLTPIAVIGGSF--LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQ 191 (248)
Q Consensus 116 ~~~~~v~~~-~~~-~~l~~~y~~ad~~~v~~s~--~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~ 191 (248)
...-+|.|+ ++. +--..+|..||+. ..+|. .|. .|.+=+=+|..|.+-|.+-++ ...|+.+.+. .++|+.+-
T Consensus 626 ~~~lKVvFl~nYdvslA~~I~~gaDv~-l~~S~ag~EA-sGTs~MKamlNGaLtigtlDG-anvEi~e~vG-~~Ngf~FG 701 (824)
T 2gj4_A 626 GDRLRVIFLENYRVSLAEKVIPAADLS-EQISTAGTEA-SGTGNMKFMLNGALTIGTMDG-ANVEMAEEAG-EENFFIFG 701 (824)
T ss_dssp GGGEEEEEETTCCHHHHHHHGGGCSEE-EECCCTTSCS-CCSHHHHHHHTTCEEEECSCT-THHHHHHHHC-GGGSEECS
T ss_pred CCceEEEEECCCCHHHHHHHhhhccee-ecCCCCCCCC-CchHHHHHHHcCceEEEEecC-ccchhhhccC-CCCEEEeC
Confidence 001145555 433 3347789999995 55776 575 478889999999999976554 3335554432 23335443
Q ss_pred cCCHHHH
Q 043830 192 VSGKSEL 198 (248)
Q Consensus 192 ~~~~~~l 198 (248)
. .++++
T Consensus 702 ~-~~~ev 707 (824)
T 2gj4_A 702 M-RVEDV 707 (824)
T ss_dssp C-CHHHH
T ss_pred C-cHHHH
Confidence 3 36666
No 61
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=94.40 E-value=0.19 Score=42.12 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccE-EEEc--ChhHHHHHHhhCCE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNV-YVVD--TLGELRQLYKLTPI 139 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v-~~~~--~~~~l~~~y~~ad~ 139 (248)
.+.+.+.+..|.++ +++++++|...++ +..++.....+-.. ..++ .+.+ +..++..+++.||+
T Consensus 199 ~~~~~~l~~~L~~~--~~~vvl~g~~~e~-~~~~~i~~~~~~~~-----------~~~~~~l~g~~sl~e~~ali~~a~l 264 (348)
T 1psw_A 199 HYHYAELAKQLIDE--GYQVVLFGSAKDH-EAGNEILAALNTEQ-----------QAWCRNLAGETQLDQAVILIAACKA 264 (348)
T ss_dssp HHHHHHHHHHHHHT--TCEEEECCCGGGH-HHHHHHHTTSCHHH-----------HTTEEECTTTSCHHHHHHHHHTSSE
T ss_pred HHHHHHHHHHHHHC--CCeEEEEeChhhH-HHHHHHHHhhhhcc-----------ccceEeccCcCCHHHHHHHHHhCCE
Confidence 45677777777654 6888888864432 33333332211000 0011 2223 35689999999999
Q ss_pred EEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 140 AVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 140 ~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+ |+.+ + |++ -.|+|+|+|+|+
T Consensus 265 ~-I~~D---s-g~~--HlAaa~g~P~v~ 285 (348)
T 1psw_A 265 I-VTND---S-GLM--HVAAALNRPLVA 285 (348)
T ss_dssp E-EEES---S-HHH--HHHHHTTCCEEE
T ss_pred E-EecC---C-HHH--HHHHHcCCCEEE
Confidence 5 4432 1 222 239999999997
No 62
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=94.30 E-value=0.5 Score=44.36 Aligned_cols=145 Identities=11% Similarity=0.087 Sum_probs=78.1
Q ss_pred CCeEEEEeCC-C-cchHHH-HHHHHHHHHH--hCC-----CeEEEEecCC-CCCHH--HHHHHHHhcCCceEEecccCCC
Q 043830 49 HRQVWMASSI-H-RGEEKV-MLAVHKVLMQ--KNP-----NLVTIIVPRH-PQHGK--EIAQKLQKEGEVVALRSRHEKL 115 (248)
Q Consensus 49 ~~~v~l~~~~-~-~~~~~~-ll~a~~~l~~--~~~-----~~~lvivG~~-~~~~~--~l~~~~~~~~l~~~~~~~~~~~ 115 (248)
+.+++..+++ + .|.... ++..+..+.+ ..| +..+|+.|.+ |.... .+.+++....- .+. ..+..
T Consensus 515 d~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~--~in-~dp~~ 591 (796)
T 2c4m_A 515 ESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIAD--LVN-NDPEV 591 (796)
T ss_dssp TSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHH--HHH-TCTTT
T ss_pred CCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHH--Hhc-ccccc
Confidence 4456666655 3 366555 6777666643 332 4789999965 44422 22222322210 000 00000
Q ss_pred CCCccEEEE-cCh-hHHHHHHhhCCEEEEcCcc--CCCCCCCCHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEE
Q 043830 116 MPRTNVYVV-DTL-GELRQLYKLTPIAVIGGSF--LPGLAGHNISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQ 191 (248)
Q Consensus 116 ~~~~~v~~~-~~~-~~l~~~y~~ad~~~v~~s~--~e~~gg~~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~ 191 (248)
...-+|.|+ ++. +--..+|..||+. ..+|. .|. .|.+=+=+|..|.+-|.|-++ ...|+.+... .++|+.+-
T Consensus 592 ~~~lKVvFl~nY~vslA~~I~~gaDv~-l~~S~a~~EA-sGTs~MKam~NGaL~iGtLDG-anvEi~e~vG-~~NgF~FG 667 (796)
T 2c4m_A 592 SPLLKVVFVENYNVSPAEHILPASDVS-EQISTAGKEA-SGTSNMKFMMNGALTLGTMDG-ANVEIVDSVG-EENAYIFG 667 (796)
T ss_dssp TTTEEEEEETTCCHHHHHHHGGGCSEE-EECCCTTSCS-CCHHHHHHHHTTCEEEEESST-HHHHHHHHHC-GGGSEEES
T ss_pred CCceEEEEECCCCHHHHHHHhhhccee-ecCCCCCCCC-CchHHHHHHHcCCeEEeccCC-eEeehhhhcC-CCcEEEec
Confidence 111145554 443 3347789999995 55776 565 477778999999999976554 3335544432 23446664
Q ss_pred c--CCHHHHHH
Q 043830 192 V--SGKSELEE 200 (248)
Q Consensus 192 ~--~~~~~l~~ 200 (248)
. .+++++..
T Consensus 668 ~~~~ev~~l~~ 678 (796)
T 2c4m_A 668 ARVEELPALRE 678 (796)
T ss_dssp CCTTTHHHHHH
T ss_pred CchhhHHHHHH
Confidence 4 55555543
No 63
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=94.04 E-value=0.57 Score=33.21 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=62.7
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh----hCCEEEEcCccCCCCCCCCH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK----LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~----~ad~~~v~~s~~e~~gg~~~ 155 (248)
.+++|+.+++.....+...+...|.. +.......+...++. ..|++++...+.. ..|..+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~---------------v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~~~ 67 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNE---------------VLTASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGMDI 67 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCce---------------EEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHHHH
Confidence 46778877665546677777666543 223333334434443 5788777444322 224444
Q ss_pred HHHHh---hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhhC
Q 043830 156 SEAAA---AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 156 lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
++.+. ..+|||+-....+.......+ ..| .+++..+-+.++|..+|..++..
T Consensus 68 ~~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 68 LREIKKITPHMAVIILTGHGDLDNAILAM-KEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp HHHHHHHCTTCEEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEECCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 44433 368888632222333333333 334 24556668999999999988853
No 64
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=93.90 E-value=0.24 Score=41.97 Aligned_cols=81 Identities=11% Similarity=0.137 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~ 140 (248)
.+.+.+.+..+.++ +.+++++|. +...+..++.....+-. .+.+.+ +..++..+++.||++
T Consensus 203 ~~~~~~l~~~l~~~--g~~vvl~g~-~~e~~~~~~i~~~~~~~--------------~~~l~g~~sl~e~~ali~~a~~~ 265 (349)
T 3tov_A 203 AERFAHVADYFGRL--GYKTVFFGG-PMDLEMVQPVVEQMETK--------------PIVATGKFQLGPLAAAMNRCNLL 265 (349)
T ss_dssp HHHHHHHHHHHHHH--TCEEEECCC-TTTHHHHHHHHHTCSSC--------------CEECTTCCCHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHhC--CCeEEEEeC-cchHHHHHHHHHhcccc--------------cEEeeCCCCHHHHHHHHHhCCEE
Confidence 45667777777655 567888886 44434444444443211 122222 356899999999995
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++. ++ |..-+ |.|+|+|+|+
T Consensus 266 -i~~---Ds--G~~Hl-Aaa~g~P~v~ 285 (349)
T 3tov_A 266 -ITN---DS--GPMHV-GISQGVPIVA 285 (349)
T ss_dssp -EEE---SS--HHHHH-HHTTTCCEEE
T ss_pred -EEC---CC--CHHHH-HHhcCCCEEE
Confidence 433 22 33334 9999999997
No 65
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=93.89 E-value=0.63 Score=33.14 Aligned_cols=113 Identities=8% Similarity=0.016 Sum_probs=63.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+++.....+...+...|.. |.......+....+. ..|++++...+.. ..|..++
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~~~~ 71 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFD---------------IIQCGNAIEAVPVAVKTHPHLIITEANMPK-ISGMDLF 71 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEE---------------EEEESSHHHHHHHHHHHCCSEEEEESCCSS-SCHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCe---------------EEEeCCHHHHHHHHHcCCCCEEEEcCCCCC-CCHHHHH
Confidence 467888887776656777777766543 223333333333332 3688777433322 2344556
Q ss_pred HHHh-----hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+. ..+|||+-....+.......+..+..+++..+-+.++|...|..++.
T Consensus 72 ~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 72 NSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp HHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 6654 36788862222233333333332223455666799999999988875
No 66
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=93.58 E-value=0.95 Score=32.61 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=60.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. |.......+....+. ..|++++..... +..|..+++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dliild~~l~-~~~g~~~~~ 67 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFT---------------VSSFASATEALAGLSADFAGIVISDIRMP-GMDGLALFR 67 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESCHHHHHHTCCTTCCSEEEEESCCS-SSCHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcE---------------EEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHH
Confidence 45677776655445666666665543 222232233333332 257877643332 122334444
Q ss_pred HHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhCHH
Q 043830 158 AAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSDAR 210 (248)
Q Consensus 158 A~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~~~ 210 (248)
.+. ..+|||+-....+.......+ ..|. +++..+-+.++|...|..++....
T Consensus 68 ~l~~~~~~~pii~ls~~~~~~~~~~~~-~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 68 KILALDPDLPMILVTGHGDIPMAVQAI-QDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp HHHHHCTTSCEEEEECGGGHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCEEEEECCCChHHHHHHH-hcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 443 478888632222322333333 3342 455566799999999998886443
No 67
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=93.08 E-value=1.4 Score=30.52 Aligned_cols=113 Identities=13% Similarity=0.155 Sum_probs=62.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHH-HHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQ-LYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~-~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
.+++|+.+++.....+.+.+.+.|... +.......+... +.. ..|++++--.. ++..|..++
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~--------------v~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~~~~ 70 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYED--------------VLEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGLDLV 70 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCC--------------EEEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcE--------------EEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHH
Confidence 567788876655466777777766531 222222223222 222 36786663322 322345566
Q ss_pred HHHhh-----CCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAAA-----GCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a~-----G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+.. .+|||+-....+.......+..+..+++..+-++++|..++..++.
T Consensus 71 ~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 71 KKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp HHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 66542 5788863222233333333333333466677899999999988875
No 68
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=92.95 E-value=1.6 Score=30.39 Aligned_cols=113 Identities=11% Similarity=0.056 Sum_probs=62.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh---------hCCEEEEcCccCCCC
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK---------LTPIAVIGGSFLPGL 150 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~---------~ad~~~v~~s~~e~~ 150 (248)
.+++|+.+++.....+.+.+...|... .+.......+...++. ..|++++-... ++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~-------------~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~-~~~ 68 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPH-------------EVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKK 68 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCC-------------EEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCc-------------eEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC-Ccc
Confidence 467777776655466777776665421 2333344445444444 47887774333 222
Q ss_pred CCCCHHHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 151 AGHNISEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 151 gg~~~lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|..+++.+. ..+|||+-....+.......+ +.|. +++..+-+.++|...|..++.
T Consensus 69 ~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 69 DGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSY-DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp CHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHH-HhchhheecCCCCHHHHHHHHHHHHH
Confidence 3444555544 467888622222333333333 3342 455566799999999887763
No 69
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=92.83 E-value=1.1 Score=32.39 Aligned_cols=69 Identities=9% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCEEEEcCccCCCCCCCCHHHHH---hhCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAA---AAGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~---a~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++-..+ ++..|..+++.+ ...+|||+-....+.....+.+ ..|. +++..+-+.++|.++|..++.
T Consensus 84 ~dliilD~~l-~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 84 IDIVTLXITM-PKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCL-IKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CCEEEECSSC-SSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCEEEEeccC-CCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 4776664333 222244444443 3467888632222333333333 3343 355566799999999988774
No 70
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=92.50 E-value=1.7 Score=30.74 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=61.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+++.....+...+...|... .+.......+....+.. -|++++-... ++..|..++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~-------------~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~ 70 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHC-------------QLEFVDNGAKALYQVQQAKYDLIILDIGL-PIANGFEVM 70 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCE-------------EEEEESSHHHHHHHHTTCCCSEEEECTTC-GGGCHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCe-------------eEEEECCHHHHHHHhhcCCCCEEEEeCCC-CCCCHHHHH
Confidence 4567777776655466667676665531 12333333344333332 5777664333 222344556
Q ss_pred HHHh-----hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcC-CHHHHHHHHHHhhh
Q 043830 157 EAAA-----AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVS-GKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~-~~~~l~~~i~~ll~ 207 (248)
+.+. .++|||+-....+.......+ +.| .+++..+- +.++|.++|..+++
T Consensus 71 ~~lr~~~~~~~~pii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 71 SAVRKPGANQHTPIVILTDNVSDDRAKQCM-AAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp HHHHSSSTTTTCCEEEEETTCCHHHHHHHH-HTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 5554 368888632222333333333 344 34555667 99999999987773
No 71
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=92.21 E-value=0.8 Score=32.33 Aligned_cols=112 Identities=8% Similarity=0.083 Sum_probs=57.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. |.......+...++. ..|++++-... ++..|..+++
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~l~~ 68 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGIS---------------IDLAYNCEEAIGKIFSNKYDLIFLEIIL-SDGDGWTLCK 68 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCE---------------EEEESSHHHHHHHHHHCCCSEEEEESEE-TTEEHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCE---------------EEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHH
Confidence 46677777655445566666554442 222222223323322 35776663333 2222444555
Q ss_pred HHhh--CCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAAA--GCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a~--G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+.- ..|||+-....+.....+.+..+..+++..+-+.++|...+..++.
T Consensus 69 ~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 69 KIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp HHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 5432 6788862222233333433332223455666799999999987764
No 72
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=92.14 E-value=2 Score=29.52 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=38.2
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++--.. ++..|..+++.+. ...|||+-....+.......+ +.|. +++..+-++++|...+..+++
T Consensus 47 ~dlvllD~~~-p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~-~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 47 PDLIVLXIMM-PVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLAL-SLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CSEEEECSCC-SSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEEeccC-CCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHH-hcChhhhccCCCCHHHHHHHHHHHhc
Confidence 5776653222 2223455566553 367888632222333333333 3333 455667899999999988764
No 73
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=92.14 E-value=2.2 Score=30.44 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=59.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh-h--CCEEEEcCccCCCCCCCCHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK-L--TPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~-~--ad~~~v~~s~~e~~gg~~~l 156 (248)
.+++|+.+++.....+...++. +.. |.......+....+. . .|++++-... ++..|..++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~---------------v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~g~~~~ 67 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFE---------------VTTCESGPEALACIKKSDPFSVIMVDMRM-PGMEGTEVI 67 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSE---------------EEEESSHHHHHHHHHHSCCCSEEEEESCC-SSSCHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-Cce---------------EEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCcHHHHH
Confidence 4677777765443445554432 322 233333334433333 2 3887764333 222244444
Q ss_pred HHH---hhCCcEEECCCCCChHHHHHHHHhcC--CceEEEcCCHHHHHHHHHHhhhCHHH
Q 043830 157 EAA---AAGCAVLTGPHIGHYSNMVSAMQRLN--PKSVLQVSGKSELEEALSQLFSDARV 211 (248)
Q Consensus 157 EA~---a~G~Pvi~~~~~~~~~~~~~~~~~~g--~g~~~~~~~~~~l~~~i~~ll~~~~~ 211 (248)
+.+ ....|||+-....+.....+.+ ..| .+++..+-+.++|..+|..++.....
T Consensus 68 ~~l~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 68 QKARLISPNSVYLMLTGNQDLTTAMEAV-NEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp HHHHHHCSSCEEEEEECGGGHHHHHHHH-HHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEEECCCCHHHHHHHH-HcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 443 3467888632222333333333 334 24666678999999999998864443
No 74
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=91.70 E-value=2.5 Score=29.66 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=58.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. |.......+.-..+. ..|++++--.. ++..|..+++
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~ 68 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYE---------------VRRAASGEEALQQIYKNLPDALICDVLL-PGIDGYTLCK 68 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCE---------------EEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHH
Confidence 35666666555445555666555543 122222222222222 35776663322 2223445555
Q ss_pred HHh-----hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA-----AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. ..+|||+-....+.....+.+..+..+++..+-+.++|..++..++..
T Consensus 69 ~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 69 RVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp HHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 543 367888632222333333333333334666678999999999988854
No 75
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=91.68 E-value=2.1 Score=30.65 Aligned_cols=115 Identities=9% Similarity=0.063 Sum_probs=61.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+.+.....+...+...|.. |.......+...++. ..|++++...+. +..|..++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~ 70 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCN---------------IITFTSPLDALEALKGTSVQLVISDMRMP-EMGGEVFL 70 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCE---------------EEEESCHHHHHHHHTTSCCSEEEEESSCS-SSCHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCe---------------EEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHH
Confidence 456777777655445566666655543 223333334434333 257877643332 12234444
Q ss_pred HHHh---hCCcEEECCCCCChHHHHHHHHhcC--CceEEEcCCHHHHHHHHHHhhhCHH
Q 043830 157 EAAA---AGCAVLTGPHIGHYSNMVSAMQRLN--PKSVLQVSGKSELEEALSQLFSDAR 210 (248)
Q Consensus 157 EA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g--~g~~~~~~~~~~l~~~i~~ll~~~~ 210 (248)
+.+. ..+|||+-....+.......+ ..| .+++..+-+.++|...|..++....
T Consensus 71 ~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 71 EQVAKSYPDIERVVISGYADAQATIDAV-NRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp HHHHHHCTTSEEEEEECGGGHHHHHHHH-HTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcEEEEecCCCHHHHHHHH-hccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 4442 378888632222322333333 333 2456667899999999998885433
No 76
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=91.67 E-value=1.7 Score=31.11 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=59.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhc-CCceEEecccCCCCCCccEEEEcChhHHHHHHhh---CCEEEEcCccCCCCCCCC
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKE-GEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL---TPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~---ad~~~v~~s~~e~~gg~~ 154 (248)
.++++|+.+++.....+...+... |.. .+.......+...++.. .|++++..... +..|..
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~--------------~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~-~~~g~~ 67 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGM--------------RVEGAETVSDALAFLEADNTVDLILLDVNLP-DAEAID 67 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTE--------------EEEEESSHHHHHHHHHTTCCCSEEEECC-------CHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCce--------------EEEEecCHHHHHHHHhccCCCCEEEEeCCCC-CCchHH
Confidence 356777777665445666666654 432 12333334454444433 68877643332 222444
Q ss_pred HHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 155 ISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 155 ~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
+++.+. ..+|||+-....+.......+ ..|. +++..+-+.++|..+|..++..
T Consensus 68 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 68 GLVRLKRFDPSNAVALISGETDHELIRAAL-EAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp HHHHHHHHCTTSEEEEC-----CHHHHHHH-HTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCeEEEEeCCCCHHHHHHHH-HccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 555543 368988732222222333333 3332 3555567999999999988863
No 77
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=91.63 E-value=2.7 Score=29.95 Aligned_cols=113 Identities=7% Similarity=0.078 Sum_probs=59.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh---------hCCEEEEcCccCCC
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK---------LTPIAVIGGSFLPG 149 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~---------~ad~~~v~~s~~e~ 149 (248)
..+++|+.+++.....+...+...|... .|.......+.-.++. ..|++++--.. ++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~-------------~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~l-p~ 73 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDH-------------ELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-PK 73 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCE-------------EEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-SS
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCc-------------cEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCC-CC
Confidence 4667777776554455666665544321 1223333334434443 36887763322 22
Q ss_pred CCCCCHHHHHh-----hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhh
Q 043830 150 LAGHNISEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 150 ~gg~~~lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll 206 (248)
..|..+++.+. ..+|||+-....+.....+.+ +.| .+++..+-+.++|..+|..++
T Consensus 74 ~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 74 KDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASY-ELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp SCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHH
Confidence 23445566554 356887622222333334333 333 245666679999998887664
No 78
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=91.62 E-value=2 Score=30.66 Aligned_cols=112 Identities=10% Similarity=0.162 Sum_probs=60.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHH-----------hhCCEEEEcCccCC
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLY-----------KLTPIAVIGGSFLP 148 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y-----------~~ad~~~v~~s~~e 148 (248)
.+++|+.+++.....+...+.+.|... .|.......+...++ ..-|++++--.+ +
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~-------------~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~ 70 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNN-------------EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-P 70 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCC-------------CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-S
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcc-------------eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-C
Confidence 467777776655466777777665521 233333333444444 235776664333 2
Q ss_pred CCCCCCHHHHHhh-----CCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhh
Q 043830 149 GLAGHNISEAAAA-----GCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 149 ~~gg~~~lEA~a~-----G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll 206 (248)
+..|..+++.+.. ++|||+-....+.....+.+ +.|. +++..+-+.++|..+|..+.
T Consensus 71 ~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 71 DMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCY-DLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp SSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHH-HCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 2235556665543 67888632222332333333 3342 45556679999998887663
No 79
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=91.55 E-value=2.5 Score=30.37 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=60.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+.+.....+.+.+...|.. |.......+....+. ..|++++-..+ ++..|..++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~ 70 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQ---------------TEHVRNGREAVRFLSLTRPDLIISDVLM-PEMDGYALC 70 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCE---------------EEEESSHHHHHHHHTTCCCSEEEEESCC-SSSCHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCE---------------EEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHH
Confidence 356777777655445666666665543 222222233333333 25777664333 222344555
Q ss_pred HHHh-----hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+. ..+|||+-....+.......+..+..+++..+-+.++|..+|..++.
T Consensus 71 ~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 71 RWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp HHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5554 46788863222233333333333223455666799999999988875
No 80
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=91.50 E-value=2.4 Score=29.09 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=58.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
.++++|+.+++.....+...+...|.. .+.......+....+. ..|++++--.. ++..|..++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~--------------~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~l~ 68 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--------------NVEEAEDGVDALNKLQAGGYGFVISDWNM-PNMDGLELL 68 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCC--------------CEEEESSHHHHHHHHTTCCCCEEEEESCC-SSSCHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCc--------------EEEeeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHH
Confidence 356777777655445566666655542 1222232233333333 25887663333 222344556
Q ss_pred HHHhh-----CCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhh
Q 043830 157 EAAAA-----GCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 157 EA~a~-----G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll 206 (248)
+.+.. .+|+|+-....+.......+ +.|. +++..+-+.++|..++..++
T Consensus 69 ~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~-~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 69 KTIRAXXAMSALPVLMVTAEAKKENIIAAA-QAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp HHHHC--CCTTCCEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCCcEEEEecCccHHHHHHHH-HhCcCceeecCCCHHHHHHHHHHHH
Confidence 66543 57887522222333333333 3343 45556679999999988766
No 81
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=91.16 E-value=2.6 Score=28.90 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=57.6
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. +.......+...++.. .|++++--.. ++..|..+++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~---------------v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~ 67 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFA---------------VKMHQSAEAFLAFAPDVRNGVLVTDLRM-PDMSGVELLR 67 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCE---------------EEEESCHHHHHHHGGGCCSEEEEEECCS-TTSCHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcE---------------EEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHH
Confidence 46677777655445566666555543 2222222333333332 4676653222 2222444555
Q ss_pred HHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+. ...|||+-....+.......+ +.|. +++..+-+.++|..++..++.
T Consensus 68 ~l~~~~~~~~ii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 68 NLGDLKINIPSIVITGHGDVPMAVEAM-KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp HHHHTTCCCCEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEECCCCHHHHHHHH-HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 543 367888632222333333333 3343 455667899999999887764
No 82
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=91.10 E-value=2.8 Score=29.24 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=60.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHh-cCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQK-EGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~ 155 (248)
..+++|+.+++.....+...+.. .|... +.......+....+. ..|++++.... ++..|..+
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~--------------v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~ 72 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAK--------------IKIAYNPFDAGDLLHTVKPDVVMLDLMM-VGMDGFSI 72 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCE--------------EEEECSHHHHHHHHHHTCCSEEEEETTC-TTSCHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccE--------------EEEECCHHHHHHHHHhcCCCEEEEeccc-CCCcHHHH
Confidence 45677777766544566666666 55531 222333333333333 36887764433 22224445
Q ss_pred HHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 156 SEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 156 lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++.+. ..+|||+-....+.......+ +.|. +++..+-+.++|..+|..++.
T Consensus 73 ~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 73 CHRIKSTPATANIIVIAMTGALTDDNVSRIV-ALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp HHHHHTSTTTTTSEEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCccccCCcEEEEeCCCCHHHHHHHH-hcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 55554 367888622222333333333 3343 455556799999999988775
No 83
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=90.97 E-value=2.5 Score=30.20 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=38.2
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcC--CceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLN--PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g--~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++-..+ ++..|..+++.+. ..+|||+-....+.....+.+ ..| .+++..+-+.++|..+|..++.
T Consensus 59 ~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 59 VDLVISAAHL-PQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAI-NEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp CSEEEEESCC-SSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHH-HTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHH-hCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4665553222 2122444444433 468888633333443344333 344 2455566799999999998885
No 84
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=90.92 E-value=2.9 Score=29.36 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=60.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh------------hCCEEEEcCcc
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK------------LTPIAVIGGSF 146 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~------------~ad~~~v~~s~ 146 (248)
..+++|+.+++.....+...+...|.. ..+.......+...++. ..|++++-...
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~-------------~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l 72 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVV-------------NPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL 72 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBC-------------SCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC
Confidence 345677777655445666666665541 02333333334444443 46887764333
Q ss_pred CCCCCCCCHHHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 147 LPGLAGHNISEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 147 ~e~~gg~~~lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++..|..+++.+. ..+|||+-....+.......+ +.|. +++..+-+.++|...|..++.
T Consensus 73 -~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 73 -PGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICY-SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp -SSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 2222444555554 467888632222333333333 3342 455566799999998887763
No 85
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=90.85 E-value=0.59 Score=38.75 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc--ChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD--TLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~y~~ad~~ 140 (248)
.+.+.+.+..+.+ .+.++++.+.++...+..++..... + .+.+.+ +..++..+++.||++
T Consensus 196 ~~~~~~l~~~L~~--~~~~vvl~~g~~~e~~~~~~i~~~~--~--------------~~~l~g~~sl~el~ali~~a~l~ 257 (326)
T 2gt1_A 196 EEHWRELIGLLAD--SGIRIKLPWGAPHEEERAKRLAEGF--A--------------YVEVLPKMSLEGVARVLAGAKFV 257 (326)
T ss_dssp HHHHHHHHHHTTT--TCCEEEECCSSHHHHHHHHHHHTTC--T--------------TEEECCCCCHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHH--CCCcEEEecCCHHHHHHHHHHHhhC--C--------------cccccCCCCHHHHHHHHHhCCEE
Confidence 4566666666643 3678888743443322233332221 1 112222 357999999999995
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++. ++ |..=+ |.|+|+|+|+
T Consensus 258 -I~~---DS--G~~Hl-Aaa~g~P~v~ 277 (326)
T 2gt1_A 258 -VSV---DT--GLSHL-TAALDRPNIT 277 (326)
T ss_dssp -EEE---SS--HHHHH-HHHTTCCEEE
T ss_pred -Eec---CC--cHHHH-HHHcCCCEEE
Confidence 433 22 33335 7789999997
No 86
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=90.58 E-value=2.5 Score=29.61 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=59.0
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. |.......+...++. ..|++++.. . ++..|..+++
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlvi~d~-~-~~~~g~~~~~ 67 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFN---------------VIWAKNEQEAFTFLRREKIDLVFVDV-F-EGEESLNLIR 67 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCE---------------EEEESSHHHHHHHHTTSCCSEEEEEC-T-TTHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHhccCCCEEEEeC-C-CCCcHHHHHH
Confidence 46677776655445566666655543 222232233333333 257766643 2 2212333344
Q ss_pred HHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHH
Q 043830 158 AAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDAR 210 (248)
Q Consensus 158 A~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~ 210 (248)
.+. ..+|||+-....+.......+..+..+++..+-+.++|...|..++....
T Consensus 68 ~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 68 RIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp HHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 332 36888863222233333333332223466667899999999998886543
No 87
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=90.55 E-value=2.9 Score=28.99 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=60.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh-h--CCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK-L--TPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~-~--ad~~~v~~s~~e~~gg~~~ 155 (248)
..+++|+.+++.....+.+.+.+.|.. |.......+....+. . .|++++-... ++..|..+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~~g~~~ 70 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGID---------------AVGADGAEEARLYLHYQKRIGLMITDLRM-QPESGLDL 70 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCC---------------EEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCce---------------EEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCCCHHHH
Confidence 356778877665546677777666553 222222223333332 2 5676664333 22234455
Q ss_pred HHHHh----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhCH
Q 043830 156 SEAAA----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 156 lEA~a----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
++.+. ..+|||+.....+.....+.+ ..|. +++..+-+.++|..+|.+.+...
T Consensus 71 ~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 71 IRTIRASERAALSIIVVSGDTDVEEAVDVM-HLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp HHHHHTSTTTTCEEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred HHHHHhcCCCCCCEEEEeCCCChHHHHHHH-hCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 55553 447888632222333333333 3332 45566689999999998887643
No 88
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=90.19 E-value=3.4 Score=28.68 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=59.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
.++++|+.+++.....+.+.+...+. .+.......+....+. .-|++++-..+.+ ..|..++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~---------------~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~ 70 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFP---------------EVWSAGDGEEGERLFGLHAPDVIITDIRMPK-LGGLEML 70 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCS---------------CEEEESSHHHHHHHHHHHCCSEEEECSSCSS-SCHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCc---------------EEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHH
Confidence 35677777765544556666655332 2333333333333322 3688776433322 2244444
Q ss_pred HHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+. ...|||+-....+.....+.+..+..+++..+-+.++|..+|..+++
T Consensus 71 ~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 71 DRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp HHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 4443 36788874333343333333332222344556799999999988875
No 89
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=90.11 E-value=3.4 Score=28.72 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=31.6
Q ss_pred CCCHHHHHh--h-CCcEEECCCCCChHHHHHHHHhcCC-ceEEEcC-CHHHHHHHHHHhhh
Q 043830 152 GHNISEAAA--A-GCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVS-GKSELEEALSQLFS 207 (248)
Q Consensus 152 g~~~lEA~a--~-G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~-~~~~l~~~i~~ll~ 207 (248)
|..+++.+. . .+|||+-....+.......+ +.|. +++..+- +.++|...|..++.
T Consensus 73 g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 73 ALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAF-EQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp HHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHH-HTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHH-HcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 444555543 3 78888632222333333333 3342 3555567 99999999988875
No 90
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.99 E-value=3.7 Score=28.75 Aligned_cols=110 Identities=11% Similarity=0.151 Sum_probs=57.5
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+...+...|.. |.......+...++. ..|++++--.. ++..|..+++.
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlvllD~~l-~~~~g~~l~~~ 69 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYD---------------IFHVETGRDAIQFIERSKPQLIILDLKL-PDMSGEDVLDW 69 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSE---------------EEEESSHHHHHHHHHHHCCSEEEECSBC-SSSBHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCce---------------EEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHH
Confidence 5677877666545555555444432 223333233333332 36887763333 22234445555
Q ss_pred Hh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 159 AA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 159 ~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+. ...|||+-....+.......+ +.|. +++..+-+.++|...|..++.
T Consensus 70 l~~~~~~~~ii~ls~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 70 INQNDIPTSVIIATAHGSVDLAVNLI-QKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp HHHTTCCCEEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEEecCcHHHHHHHH-HCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 43 467887632222333333333 3343 455566799999999987763
No 91
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=89.96 E-value=3.6 Score=28.61 Aligned_cols=69 Identities=9% Similarity=0.111 Sum_probs=38.2
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++--.. ++..|..+++.+. ...|||+-....+.....+.+ +.|. +++..+-+.++|...+..++.
T Consensus 53 ~dlvllD~~m-p~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 53 YNMIFMDVQM-PKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECL-ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CSEEEECSCC-SSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEeCCC-CCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5887663222 3233455555553 256888522222333333333 3343 456667899999999988764
No 92
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=89.88 E-value=3.7 Score=28.68 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=61.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh-------CCEEEEcCccCCCCC
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL-------TPIAVIGGSFLPGLA 151 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~-------ad~~~v~~s~~e~~g 151 (248)
..+++|+.+++.....+...+...|... .+.......+...++.. -|++++--.. ++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~-------------~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l-~~~~ 74 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVE-------------EIQSVTSGNAAINKLNELYAAGRWPSIICIDINM-PGIN 74 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEE-------------EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC-SSSC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCe-------------eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCC-CCCC
Confidence 3567777766544355566666554421 22333333344444433 6887764333 2223
Q ss_pred CCCHHHHHh-------hCCcEEECCCCCChHHHHHHHHhcC--CceEEEcCCHHHHHHHHHHhhhCH
Q 043830 152 GHNISEAAA-------AGCAVLTGPHIGHYSNMVSAMQRLN--PKSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 152 g~~~lEA~a-------~G~Pvi~~~~~~~~~~~~~~~~~~g--~g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
|..+++.+. ...|+|+-....+.......+ ..| .+++..+-+.++|.++|.......
T Consensus 75 g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 75 GWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAE-ASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp HHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHH-HCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHH-hcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 445555543 467887633322333333333 333 235556679999999998887654
No 93
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=89.76 E-value=2.3 Score=29.60 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=58.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh-hCCEEEEcCccCCCCCCCCHHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK-LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~-~ad~~~v~~s~~e~~gg~~~lE 157 (248)
..+++|+.+++.....+...+...|.. |.......+...++. ..|++++--.. ++..|..+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~~~~~~dlvllD~~l-p~~~g~~~~~ 70 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCE---------------VTTVSSNEECLRVVSHEHKVVFMDVCM-PGVENYQIAL 70 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHCCTTCSEEEEECCS-STTTTTHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCe---------------EEEeCCHHHHHHHHhccCCEEEEeCCC-CCCcHHHHHH
Confidence 456778877665445566666665543 222222223333332 23887663333 2234566666
Q ss_pred HHh--h-----CCc-EE-ECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA--A-----GCA-VL-TGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a--~-----G~P-vi-~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. . ..| || .+... +.......+ +.|. +++..+-+.++|.+++..++..
T Consensus 71 ~l~~~~~~~~~~~~~ii~~s~~~-~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 71 RIHEKFTKQRHQRPLLVALSGNT-DKSTKEKCM-SFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp HHHHHHC-CCSCCCEEEEEESCC-SHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred HHHHhhhhccCCCceEEEEeCCC-CHHHHHHHH-HcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 664 1 234 55 34332 332333333 3343 4566678999999999887753
No 94
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=89.67 E-value=2.6 Score=29.35 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=58.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCC----CCCCC
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLP----GLAGH 153 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e----~~gg~ 153 (248)
.+++|+.+++.....+.+.+...|.. |.......+...++.. .|++++.....+ +..|.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~ 68 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSK---------------VITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGL 68 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSE---------------EEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcE---------------EEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH
Confidence 46777777655445566666555442 2233333344344433 467666333210 11233
Q ss_pred CHHHHHh---hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhhC
Q 043830 154 NISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 154 ~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+++.+. ..+|||+-....+.......+ +.| .+++..+-+.++|..+|..++..
T Consensus 69 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 69 FWLHEIKRQYRDLPVVLFTAYADIDLAVRGI-KEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp HHHHHHHHHCTTCCEEEEEEGGGHHHHHHHH-HTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhCcCCCEEEEECCCCHHHHHHHH-HcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 3444433 478888632212222233333 333 24666778999999999888764
No 95
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=89.43 E-value=3.8 Score=28.12 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=55.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+++.....+.+.+.+.|... .......+....+. ..|++++-... ++..|..++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v---------------~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~ 70 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATT---------------VLAADGVDALELLGGFTPDLMICDIAM-PRMNGLKLL 70 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEE---------------EEESCHHHHHHHHTTCCCSEEEECCC------CHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceE---------------EEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHH
Confidence 4567777766554455666666655431 22222223333332 25776664333 222355555
Q ss_pred HHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcC-CHHHHHHHHHHhhhC
Q 043830 157 EAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS-GKSELEEALSQLFSD 208 (248)
Q Consensus 157 EA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~l~~~i~~ll~~ 208 (248)
+.+. ...|||+-....+.....+.+..+..+++..+- +.+.|.+.+..++..
T Consensus 71 ~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 71 EHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp HHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred HHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 5543 357888622222333333333322223555555 889999999888753
No 96
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=89.42 E-value=2.5 Score=31.49 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=58.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++||.+++.....+...+...|.. |.......+...++.. .|++++--.. ++..|..+++
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~ 71 (184)
T 3rqi_A 8 KNFLVIDDNEVFAGTLARGLERRGYA---------------VRQAHNKDEALKLAGAEKFEFITVXLHL-GNDSGLSLIA 71 (184)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEECSHHHHHHHHTTSCCSEEEECSEE-TTEESHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCE---------------EEEeCCHHHHHHHHhhCCCCEEEEeccC-CCccHHHHHH
Confidence 45666766555445555555555442 2222222233233322 4676553222 2223555555
Q ss_pred HHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. ...|||+-....+.....+.+..+..+++..+-+.++|..+|..++..
T Consensus 72 ~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 72 PLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASE 125 (184)
T ss_dssp HHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHH
T ss_pred HHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHH
Confidence 543 478888632222333333333332334666678999999999887753
No 97
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=89.35 E-value=4.6 Score=28.92 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=62.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~ 155 (248)
.+++++||=+.+....-+...+++.|... |.....-.+--+++. .-|++++-- .-|++.|..+
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~--------------v~~a~~g~~al~~~~~~~~DlillD~-~MP~mdG~el 75 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNN--------------TQEADDGLTALPMLKKGDFDFVVTDW-NMPGMQGIDL 75 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCC--------------EEEESSHHHHHHHHHHHCCSEEEEES-CCSSSCHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcE--------------EEEECCHHHHHHHHHhCCCCEEEEcC-CCCCCCHHHH
Confidence 35777888776554355666677776542 111211112112222 257765521 1244446666
Q ss_pred HHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 156 SEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 156 lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++.+- ..+|||.-...+......+.+ +.|. +++..|-++++|.++|.++++
T Consensus 76 ~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~-~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 76 LKNIRADEELKHLPVLMITAEAKREQIIEAA-QAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp HHHHHHSTTTTTCCEEEEESSCCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCCCCeEEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 66653 468998632222333344333 3343 466677899999999988874
No 98
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=89.05 E-value=3.8 Score=27.67 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=55.7
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+...+...|.. +.......+...++. .-|++++--.. ++..|..+++.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~---------------v~~~~~~~~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~ 67 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYT---------------VSVTASGAGLREIMQNQSVDLILLDINL-PDENGLMLTRA 67 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCe---------------EEEecCHHHHHHHHhcCCCCEEEEeCCC-CCCChHHHHHH
Confidence 4666666554445566655555442 222222233333333 35776663332 22234445555
Q ss_pred Hh--hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 159 AA--AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 159 ~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
+. ...|+|+-....+.......+..+..+++..+-+.++|...+..++
T Consensus 68 l~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 68 LRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp HHTTCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 53 3678875222223333333333323345566679999999887665
No 99
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=88.65 E-value=5 Score=28.45 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=37.0
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++...+.+ ..|..+++.+. ..+|||+-....+.....+.+ ..|. +++..+-+.++|..+|..++.
T Consensus 67 ~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 67 VDIAILDVEMPV-KTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAV-KAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp CSEEEECSSCSS-SCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH-HTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH-HCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 456555333211 22444454443 367888632222333333333 3443 355556799999999988876
No 100
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=88.55 E-value=4.4 Score=27.69 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=57.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|... +.......+...++. ..|++++-... ++..|..+++
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~--------------v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~ 71 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQ--------------ITAAGDGEQGMKIMAQNPHHLVISDFNM-PKMDGLGLLQ 71 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSC--------------EECCSSHHHHHHHHHTSCCSEEEECSSS-CSSCHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcE--------------EEecCCHHHHHHHHHcCCCCEEEEeCCC-CCCCHHHHHH
Confidence 456777776554455666665554421 111222223333332 25776663322 2223444555
Q ss_pred HHh-----hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAA-----AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+. ...|+|+-....+.......+..+..+++..+-+.++|..++..++.
T Consensus 72 ~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 72 AVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp HHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred HHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 553 36788863332233333333332223466667899999998877653
No 101
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=88.49 E-value=1.4 Score=30.96 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=59.7
Q ss_pred eEEEEecCCCCCHHHHHHHHHh-cCCceEEecccCCCCCCccEEEEcChhHHHHHHh---hCCEEEEcCccCCCCCCCCH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQK-EGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK---LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~---~ad~~~v~~s~~e~~gg~~~ 155 (248)
.+++|+.+++.....+...+.+ .|... .......+...++. .-|++++-..+-.+..|..+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v---------------~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~ 69 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDF---------------IEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEV 69 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEE---------------EEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccE---------------EEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHH
Confidence 4677777765544566666666 55532 22222233333333 35776663222101123444
Q ss_pred HHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhCH
Q 043830 156 SEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 156 lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
++.+. ..+|||+-....+.....+.+ ..|. +++..+-+.++|..+|..++...
T Consensus 70 ~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 70 LSAIRNNSRTANTPVIIATKSDNPGYRHAAL-KFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp HHHHHHSGGGTTCCEEEEESCCCHHHHHHHH-HSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred HHHHHhCcccCCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 55443 478988632222333333333 3442 45555679999999999888643
No 102
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=88.34 E-value=4.5 Score=28.54 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=54.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+++.....+...+...|.. +.......+...++. .-|++++--.. ++..|..++
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~~~~~~~dlvl~D~~m-p~~~g~~~~ 77 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHK---------------VLCVNGAEQVLDAMAEEDYDAVIVDLHM-PGMNGLDML 77 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CE---------------EEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCe---------------EEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHH
Confidence 356677766554434555555544432 122222223333332 35776663222 222344555
Q ss_pred HHHh-------hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAA-------AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a-------~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+. -.+|||+-....+. +......+.|. +++..+-+.++|.+++..++.
T Consensus 78 ~~lr~~~~~~~~~~pii~~s~~~~~-~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 78 KQLRVMQASGMRYTPVVVLSADVTP-EAIRACEQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp HHHHHHHHTTCCCCCEEEEESCCCH-HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred HHHHhchhccCCCCeEEEEeCCCCH-HHHHHHHHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 5553 23688863222233 33333333343 456667899999999988774
No 103
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=87.98 E-value=5 Score=27.70 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=57.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. +.......+...++. .-|++++-... ++..|..+++
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~~~~~~~dlvl~D~~l-~~~~g~~~~~ 67 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYE---------------VEIAATAGEGLAKIENEFFNLALFXIKL-PDMEGTELLE 67 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHSCCSEEEECSBC-SSSBHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCce---------------EEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCchHHHHH
Confidence 35677776655445566666555543 222222223323322 35776663332 2222444555
Q ss_pred HHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+. .+.|+|+-....+.......+..+..+++..+-+.++|..+|..++.
T Consensus 68 ~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 68 KAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp HHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 442 46788863222233333333332223455666799999999987763
No 104
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=87.72 E-value=4.7 Score=27.10 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=55.3
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+.+.+...|.. +.......+...++. ..|++++-... ++..|..+++.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~---------------v~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~ 65 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQ---------------VDDAEDAKEADYYLNEHIPDIAIVDLGL-PDEDGLSLIRR 65 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCE---------------EEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHH
Confidence 4566666554434555555555442 222222223333332 35776663333 22234445555
Q ss_pred Hh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhh
Q 043830 159 AA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 159 ~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll 206 (248)
+. ...|+|+-....+.......+ +.|. +++..+-+.++|...+..++
T Consensus 66 l~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 66 WRSNDVSLPILVLTARESWQDKVEVL-SAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp HHHTTCCSCEEEEESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEecCCCHHHHHHHH-HcCccceEECCCCHHHHHHHHHHHH
Confidence 54 357887522222333333333 3333 45666789999999887765
No 105
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=87.61 E-value=0.25 Score=38.32 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=44.7
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHhhCCcEEECCCCCChHHHHHHHHhcC-------CceEEEcCCHHHHHH
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLN-------PKSVLQVSGKSELEE 200 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g-------~g~~~~~~~~~~l~~ 200 (248)
.-.-+...||.+++.|. |+|.+ .+.||+..++||++-+..+.+....+.+.+.| ...+..++|++++.+
T Consensus 111 Rk~~m~~~sda~IvlpG---G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~ 187 (195)
T 1rcu_A 111 RSFVLLRNADVVVSIGG---EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQ 187 (195)
T ss_dssp HHHHHHTTCSEEEEESC---CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHH
T ss_pred HHHHHHHhCCEEEEecC---CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHH
Confidence 34566788999777532 12122 36899999999998643333332222222222 114566799999988
Q ss_pred HHHHhh
Q 043830 201 ALSQLF 206 (248)
Q Consensus 201 ~i~~ll 206 (248)
.|.+++
T Consensus 188 ~l~~~~ 193 (195)
T 1rcu_A 188 IIEQIL 193 (195)
T ss_dssp HHHTC-
T ss_pred HHHHHh
Confidence 876543
No 106
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=87.35 E-value=5.6 Score=27.54 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=60.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+++.....+...+...|.... .......+...++. ..|++++......+..|..++
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~--------------~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~ 74 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVL--------------GVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETA 74 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEE--------------EEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeE--------------EEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHH
Confidence 46777777765544566666666555321 01222233333332 368877643331011233344
Q ss_pred HHHh--hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAA--AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+. ..+|||+-....+.......+ ..| .+++..+-+.++|...|..++.
T Consensus 75 ~~l~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 75 ARLAAGCNLPIIFITSSQDVETFQRAK-RVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp HHHHHHSCCCEEEEECCCCHHHHHHHH-TTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCHHHHHHHH-hcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 4433 478988632222333333333 333 2456667899999999987774
No 107
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=87.25 E-value=5.2 Score=27.10 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=57.4
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+...+...|.. +.......+...++. ..|++++--.. ++..|..+++.
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~---------------v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~ 68 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQ---------------TFQAANGLQALDIVTKERPDLVLLDMKI-PGMDGIEILKR 68 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCE---------------EEEESSHHHHHHHHHHHCCSEEEEESCC-TTCCHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcE---------------EEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHH
Confidence 5667776655445555655554442 222222223222222 36887663332 22224444554
Q ss_pred Hh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 159 AA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 159 ~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+. ...|||+-....+.....+.+..+..+++..+-+.++|..++..++.
T Consensus 69 l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 69 MKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp HHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred HHHhCCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 43 46888863222233333333333333466677899999999987764
No 108
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=87.19 E-value=5.3 Score=27.09 Aligned_cols=70 Identities=9% Similarity=0.047 Sum_probs=37.2
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++--.. ++..|..+++.+. ...|||+-....+.......+..+..+++..+-+.++|..++..++.
T Consensus 47 ~dlii~D~~~-p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 47 PDLILLDIML-PNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CSEEEEETTS-TTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 5776653222 2222344444432 36788862222233233333332233466777899999999887764
No 109
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=86.90 E-value=0.93 Score=34.46 Aligned_cols=70 Identities=16% Similarity=0.050 Sum_probs=43.9
Q ss_pred HHhhCCEEEEcCccCCCCCCC-CHHHHHhhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 133 LYKLTPIAVIGGSFLPGLAGH-NISEAAAAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 133 ~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
+...||.+++.|. |+|.+ .+.||+..++||++-+.. .....++.+.....+...+|++++.+.+.+.+.+
T Consensus 104 m~~~sda~IvlpG---g~GTL~E~~~al~~~kpV~~l~~~---~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 104 NALSSNVLVAVGM---GPGTAAEVALALKAKKPVVLLGTQ---PEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CGGGCSEEEEESC---CHHHHHHHHHHHHTTCCEEEESCC---HHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEEecC---CccHHHHHHHHHHhCCcEEEEcCc---ccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 4677898777542 22222 368999999999986542 1111122222222567779999999999877643
No 110
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=86.88 E-value=6.5 Score=27.83 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=38.0
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhhC
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.|++++-..+ ++..|..+++.+. ...|||+-....+.....+.+ ..| .+++..+-+.++|.++|..++..
T Consensus 62 ~dlii~d~~l-~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 62 PDVALLDYRM-PGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQAL-QQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CSEEEEETTC-SSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHH-HcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 5666653333 2222444454443 357888632222333333333 334 34555667999999999988864
No 111
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=86.84 E-value=4.6 Score=27.28 Aligned_cols=111 Identities=10% Similarity=0.061 Sum_probs=53.0
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+...+...|... .......+...++. ..|++++--.. ++..|..+++.
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v---------------~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~ 66 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYET---------------LQTREGLSALSIARENKPDLILMDIQL-PEISGLEVTKW 66 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEE---------------EEESCHHHHHHHHHHHCCSEEEEESBC-SSSBHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEE---------------EEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHH
Confidence 45666665554455666665555431 11222222222222 35776663332 22234445555
Q ss_pred Hh-----hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 159 AA-----AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 159 ~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+. ..+|||+-............+..+..+++..+-+.++|..++..++.
T Consensus 67 l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 67 LKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp HHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred HHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 54 36788863221121112222222222355566799999999887764
No 112
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=86.61 E-value=6 Score=31.03 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=38.0
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++--.. ++..|..+++.+. ...|||+-....+.......+ +.| .+++..+-+.++|..+|..++.
T Consensus 68 ~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~-~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 68 PDAVILDVXM-PGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGL-TLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CSEEEEESCC-SSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHH-TSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5676653222 2223444555543 357888632222333344333 333 3456667899999999988874
No 113
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=86.15 E-value=3.6 Score=28.24 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=58.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh---hCCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK---LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~---~ad~~~v~~s~~e~~gg~~~ 155 (248)
..+++|+.+++.....+...+...|.. +.......+....+. ..|++++...+.++..|..+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~ 69 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFL---------------VTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQV 69 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCE---------------EEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHH
Confidence 356777877665445666666665553 222233334333333 35887764333210123444
Q ss_pred HHHHh---hCCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 156 SEAAA---AGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 156 lEA~a---~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++.+. ..+|||+ +... +..... .....| +++..+-+.++|..+|..++.
T Consensus 70 ~~~l~~~~~~~~ii~~s~~~-~~~~~~-~~~~~~-~~l~kP~~~~~l~~~i~~~~~ 122 (132)
T 2rdm_A 70 ARVAREIDPNMPIVYISGHA-ALEWAS-NGVPDS-IILEKPFTSAQLITAVSQLLN 122 (132)
T ss_dssp HHHHHHHCTTCCEEEEESSC-CTTHHH-HSCTTC-EEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeCCc-cHHHHH-hhcCCc-ceEeCCCCHHHHHHHHHHHHh
Confidence 44443 3688886 3222 222222 222233 366667899999999987775
No 114
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=86.12 E-value=7.2 Score=27.61 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHh-cCCceEEecccCCCCCCccEE-EEcChhHHHHHHh--hCCEEEEcCccCCCCCCCC
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQK-EGEVVALRSRHEKLMPRTNVY-VVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~~~~v~-~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~ 154 (248)
..+++|+.+++.....+...+.. .|.. +. ......+...++. ..|++++.....+ ..|..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~---------------v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~~ 68 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYA---------------VVAEAADAGEAYRLYRETTPDIVVMDLTLPG-PGGIE 68 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEE---------------EEEEESSHHHHHHHHHTTCCSEEEECSCCSS-SCHHH
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcE---------------EEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHH
Confidence 35677777655443455555544 3322 11 2233333333333 2578766433321 12344
Q ss_pred HHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 155 ISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 155 ~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+++.+. ...|||+-....+.......+ ..|. +++..+-+.++|...|..++.
T Consensus 69 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 69 ATRHIRQWDGAARILIFTMHQGSAFALKAF-EAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSHHHHHHHH-HTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCeEEEEECCCCHHHHHHHH-HCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 444443 367888632222333333333 3443 355556789999999998886
No 115
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=85.92 E-value=3.1 Score=28.93 Aligned_cols=69 Identities=14% Similarity=0.016 Sum_probs=37.7
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHhh---CCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAAA---GCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a~---G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++-... ++..|..+++.+.. .+|||+-....+.......+ +.| .+++..+-+.++|..+|..++.
T Consensus 60 ~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 60 PGIVILDLGG-GDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLV-RMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CSEEEEEEET-TGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCEEEEeCCC-CCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH-HcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 4665553222 22235555555433 68888632222333333333 333 3455667899999999988875
No 116
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=85.92 E-value=2.6 Score=29.41 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=56.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+.+.|.. |.......+....+. .-|++++-... ++..|..+++
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~ 70 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFD---------------SDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIR 70 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCe---------------EEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHH
Confidence 46677776555445566666665543 122222223222222 35776664333 2223445565
Q ss_pred HHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+. ..+|||+-....+...........|. +++..+-+.++|..+|..+++
T Consensus 71 ~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 71 ALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp HHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 544 37899873221111111101222232 244456799999999988874
No 117
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=85.89 E-value=4.8 Score=27.79 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=55.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. +.......+...++. ..|++++-... ++..|..+++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~ 67 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYD---------------VITASDGEEALKKAETEKPDLIVLDVML-PKLDGIEVCK 67 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcE---------------EEEecCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHH
Confidence 35667776554434555555555442 222222223222222 35787664333 2222444444
Q ss_pred HHh---hCCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA---AGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a---~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. ...|||+ +... +.......+..+..+++..+-+.++|...+..++..
T Consensus 68 ~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 68 QLRQQKLMFPILMLTAKD-EEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp HHHHTTCCCCEEEEECTT-CCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCEEEEECCC-CHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 443 4578875 3221 111222223222224556668999999999887754
No 118
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=85.70 E-value=6.8 Score=27.23 Aligned_cols=110 Identities=6% Similarity=0.084 Sum_probs=57.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--------hCCEEEEcCccCCCCC
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--------LTPIAVIGGSFLPGLA 151 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--------~ad~~~v~~s~~e~~g 151 (248)
.+++|+.+++.....+.+.+...|... .|.......+....+. ..|++++.... ++..
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~~-------------~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l-~~~~ 73 (143)
T 2qvg_A 8 VDILYLEDDEVDIQSVERVFHKISSLI-------------KIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI-PKMN 73 (143)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHHCTTC-------------CEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC-TTSC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCCc-------------eEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC-CCCC
Confidence 467777776655456666666665421 2333443344444443 46887764333 2222
Q ss_pred CCCHHHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHH
Q 043830 152 GHNISEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQ 204 (248)
Q Consensus 152 g~~~lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ 204 (248)
|..+++.+. ..+|+|+-....+...... ..+.|. +++..+-+.++|.+++..
T Consensus 74 g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~-~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 74 GIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLA-FESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp HHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHH-HTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccCCcEEEEeCCCCHHHHHH-HHhcCCCeEEECCCCHHHHHHHHHH
Confidence 444555554 4678886322223323333 333332 355556799999887643
No 119
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=85.55 E-value=6.2 Score=30.04 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=57.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh---------------hCCEEEEc
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK---------------LTPIAVIG 143 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~---------------~ad~~~v~ 143 (248)
..+++||-+.+.....+...+...|.. .|.......+...++. .-|++++-
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~--------------~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD 126 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVS--------------EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMD 126 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCS--------------EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCC--------------eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEc
Confidence 457888887665545677777776652 1233333333333333 46887763
Q ss_pred CccCCCCCCCCHHHHHh-------hCCcEEECCCCC-ChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhCHH
Q 043830 144 GSFLPGLAGHNISEAAA-------AGCAVLTGPHIG-HYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSDAR 210 (248)
Q Consensus 144 ~s~~e~~gg~~~lEA~a-------~G~Pvi~~~~~~-~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~~~ 210 (248)
-.+ ++..|..+++.+. ..+|||+-.... +.....+.+ +.|. +++..+-+ +|.++|..++....
T Consensus 127 ~~l-p~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~-~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 127 CQM-PEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI-QAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp SCC-SSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHH-HHTCSEEEETTCT--THHHHHHHHC----
T ss_pred CCC-CCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHH-hCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 332 3233455555543 468998632221 222333333 3342 23333334 89999988886443
No 120
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=85.49 E-value=1.3 Score=31.41 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 162 GCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 162 G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
..|||+-....+.....+.+ ..|. +++..+-+.++|..+|..++.
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAM-RAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHH-TTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHH-HhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 67888632222333333333 3332 344556799999999988774
No 121
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=85.48 E-value=2.4 Score=28.82 Aligned_cols=111 Identities=12% Similarity=0.027 Sum_probs=57.4
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+.+.+...|.. +.......+....+. ..|++++......+..|..+++.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~ 71 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFT---------------VDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGK 71 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCE---------------EEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCce---------------EEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHH
Confidence 5667776555445566666655543 222222223322222 35777664333201124445555
Q ss_pred Hh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 159 AA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 159 ~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
+. ..+|||+- ......... ...+.|. +++..+-+.++|...+..++..
T Consensus 72 l~~~~~~~~~~ii~~-~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 72 LKKDDDLKNVPIVII-GNPDGFAQH-RKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp HHHSTTTTTSCEEEE-ECGGGHHHH-HHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred HhcCccccCCCEEEE-ecCCchhHH-HHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 53 46888875 332332233 3333332 3455567999999999887753
No 122
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=84.95 E-value=5.3 Score=27.82 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=57.0
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. +.......+...++. .-|++++--.. ++..|..+++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~l~~~~~dlvi~D~~l-~~~~g~~~~~ 67 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYR---------------PITAFSGEECLEALNATPPDLVLLDIMM-EPMDGWETLE 67 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCce---------------EEEeCCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHH
Confidence 35677777655445566666655543 122222223333332 25787663333 2223455666
Q ss_pred HHh-----hCCcEEE-CCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA-----AGCAVLT-GPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a-----~G~Pvi~-~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. ..+|||+ +... ......... ..| .+++..+-+.++|...|..++..
T Consensus 68 ~l~~~~~~~~~~ii~ls~~~-~~~~~~~~~-~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 68 RIKTDPATRDIPVLMLTAKP-LTPEEANEY-GSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp HHHHSTTTTTSCEEEEESSC-CCHHHHHHT-TTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred HHHcCcccCCCCEEEEECCC-ChHHHHHHh-hcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 664 3578885 3222 222222111 111 23666677899999999888754
No 123
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=84.59 E-value=1.5 Score=30.91 Aligned_cols=111 Identities=15% Similarity=0.126 Sum_probs=57.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh---hCCEEEEcCccCCCCCCCCHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK---LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~---~ad~~~v~~s~~e~~gg~~~l 156 (248)
.+++|+.+++.....+...+...|.. |.......+....+. .-|++++-..+-++..|..++
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~ 70 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYT---------------VEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTA 70 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCE---------------EEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHH
Confidence 46777877665546677777766653 222222233333332 358877643332222344445
Q ss_pred HHHh--hCCcEEE-CCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAA--AGCAVLT-GPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a--~G~Pvi~-~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+. -.+|||+ +... +.... ......|. +++..+-+.++|..+|..++.
T Consensus 71 ~~l~~~~~~~ii~ls~~~-~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 71 LAIQQISELPVVFLTAHT-EPAVV-EKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp HHHHHHCCCCEEEEESSS-SCCCC-GGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCEEEEECCC-CHHHH-HHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 4443 3788886 2221 11111 11222232 244556799999999988774
No 124
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=84.39 E-value=7.1 Score=26.04 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=38.0
Q ss_pred hCCEEEEcCccCCCCCCCCHHHHH--hhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 136 LTPIAVIGGSFLPGLAGHNISEAA--AAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~~~lEA~--a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
..|++++-... ++..|..+++.+ ....|+|+-....+.......+..+..+++..+-+.++|...+..++.
T Consensus 45 ~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 45 QPDIIILDLML-PEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp CCSEEEECSSC-SSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeccC-CCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 35787664333 222344444444 356888862222233233333332223466667899999998877664
No 125
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=84.31 E-value=7.4 Score=26.19 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=55.2
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+...+...|.. +.......+...++. ..|++++--.. ++..|..+++.
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~---------------v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~ 68 (123)
T 1xhf_A 5 HILIVEDELVTRNTLKSIFEAEGYD---------------VFEATDGAEMHQILSEYDINLVIMDINL-PGKNGLLLARE 68 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCE---------------EEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhCCcE---------------EEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHH
Confidence 5667776554434555555554442 222222223333332 35776663322 22224444444
Q ss_pred Hh--hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 159 AA--AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 159 ~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
+. ...|+|+-....+.......+..+..+++..+-+.++|...+..++
T Consensus 69 l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 69 LREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp HHHHCCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHhCCCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 42 4688885222223333333333333346666789999999887665
No 126
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=83.04 E-value=11 Score=28.19 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=37.1
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhCH
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
-|++++--.. ++..|..+++.+. ...|||+-....+. +......+.|. +++..+-+.++|...|..++...
T Consensus 59 ~dlvi~D~~~-p~~~g~~~~~~l~~~~~~pii~lt~~~~~-~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 59 PDLVIMDVKM-PRRDGIDAASEIASKRIAPIVVLTAFSQR-DLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp CSEEEEESSC-SSSCHHHHHHHHHHTTCSCEEEEEEGGGH-HHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCChHHHHHHHHhcCCCCEEEEecCCCH-HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5676653222 2223444454443 23477752211122 22222233343 35566789999999999888643
No 127
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=82.57 E-value=5.9 Score=26.96 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=56.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+.+.+.+.|.. |.......+...++. ..|++++-..+ ++..|..+++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~ 67 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQ---------------ADYVMSGTDALHAMSTRGYDAVFIDLNL-PDTSGLALVK 67 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEE---------------EEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCC---------------EEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHH
Confidence 46677777655445666666665542 222222233333332 35777664333 2223445555
Q ss_pred HHh-----hCCcEEE-CCCC-CChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA-----AGCAVLT-GPHI-GHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a-----~G~Pvi~-~~~~-~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. ..+|||+ +... .........+ ..+++..+-+.++|.+++....+.
T Consensus 68 ~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g---~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 68 QLRALPMEKTSKFVAVSGFAKNDLGKEACEL---FDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp HHHHSCCSSCCEEEEEECC-CTTCCHHHHHH---CSEEEESSCCHHHHHHHHHHHC--
T ss_pred HHHhhhccCCCCEEEEECCcchhHHHHHHHh---hHHheeCCCCHHHHHHHHHHhhcc
Confidence 543 4578886 2211 1111222222 233667778999999998876653
No 128
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=82.32 E-value=8.9 Score=25.62 Aligned_cols=68 Identities=13% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll 206 (248)
.|++++--.. ++..|..+++.+. .+.|+|+-....+.......+ +.|. +++..+-+.++|...+..++
T Consensus 48 ~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 48 PDIVTMDITM-PEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAI-KAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CSEEEEECSC-GGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCEEEEeCCC-CCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHHh
Confidence 5776663322 2122444555543 467887632222333333333 3342 45556679999998887654
No 129
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.18 E-value=4.7 Score=32.73 Aligned_cols=27 Identities=19% Similarity=0.083 Sum_probs=0.0
Q ss_pred eEEEcCCHHHHHHHHHHhhhCHHHHHH
Q 043830 188 SVLQVSGKSELEEALSQLFSDARVLEA 214 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll~~~~~~~~ 214 (248)
+.+.|..--+|+-+|+--+.++..|++
T Consensus 218 ~~~dp~~dpela~alr~s~eee~~rq~ 244 (268)
T 4b4t_W 218 FGVDPSMDPELAMALRLSMEEEQQRQE 244 (268)
T ss_dssp ---------------------------
T ss_pred cCCCCCCCHHHHHHHHHhHHHHHHHHH
Confidence 346776666799999877765555544
No 130
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=81.92 E-value=3.3 Score=28.87 Aligned_cols=112 Identities=9% Similarity=0.034 Sum_probs=56.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCC--CCCCCH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPG--LAGHNI 155 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~--~gg~~~ 155 (248)
.+++|+.+++.....+...+.+.|... .......+....+. .-|++++-... ++ ..|..+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v---------------~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~~~g~~~ 70 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTI---------------QCFASAESFMRQQISDDAIGMIIEAHL-EDKKDSGIEL 70 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEE---------------EEESSHHHHTTSCCCTTEEEEEEETTG-GGBTTHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEE---------------EEeCCHHHHHHHHhccCCCEEEEeCcC-CCCCccHHHH
Confidence 467777776554455666666555432 22221112212221 24665553222 11 123344
Q ss_pred HHHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 156 SEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 156 lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++.+. ...|||+-....+.....+.+..+..+++..+-+.++|..+|..++.
T Consensus 71 ~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 71 LETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp HHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHh
Confidence 44433 36788863222243334433332223455566799999999987775
No 131
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=81.62 E-value=6.7 Score=29.89 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=57.6
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEAA 159 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~ 159 (248)
.+++|+.+++.....+...+...| . |.......+........|++++--.. ++..|..+++.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~---------------v~~~~~~~~al~~~~~~dlvllD~~l-p~~~g~~~~~~l 65 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-R---------------VKTFLTGEDFLNDEEAFHVVVLDVML-PDYSGYEICRMI 65 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-E---------------EEEESSHHHHHHCCSCCSEEEEESBC-SSSBHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-C---------------EEEECCHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHH
Confidence 356777776554455555555443 1 22222222332223567887764333 222244444444
Q ss_pred h---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 160 A---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 160 a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
. ..+|||+-....+.......+..+..+++..+-+.++|..+|..++.
T Consensus 66 r~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 66 KETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp HHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 3 47888863222233333333333233455666899999999988764
No 132
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=81.50 E-value=14 Score=27.40 Aligned_cols=111 Identities=8% Similarity=-0.038 Sum_probs=59.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
..+++||.+++.....+...+...|........+. ..+ -...|++++--.. ++..|. +.+.
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~--------------~al---~~~~dlvl~D~~m-p~~~g~-l~~~ 72 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP--------------EAF---DVPVDVVFTSIFQ-NRHHDE-IAAL 72 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC--------------SSC---SSCCSEEEEECCS-STHHHH-HHHH
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCch--------------hhC---CCCCCEEEEeCCC-CccchH-HHHH
Confidence 45788888876654667777776666432221111 001 1245776653222 222233 4444
Q ss_pred Hh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhCH
Q 043830 159 AA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 159 ~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
+. ..+|||+-....+.......+ +.|. +++..|-+.++|..++..++...
T Consensus 73 ~~~~~~~~~ii~lt~~~~~~~~~~a~-~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 73 LAAGTPRTTLVALVEYESPAVLSQII-ELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp HHHSCTTCEEEEEECCCSHHHHHHHH-HHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred HhccCCCCCEEEEEcCCChHHHHHHH-HcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 43 468888622222333333333 3333 45666779999999998887643
No 133
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=81.27 E-value=1.7 Score=30.49 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=55.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+++.....+...+...|.. |.......+...++.. .|++++...+ ++..|..++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~ 70 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFH---------------IISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTI 70 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeE---------------EEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHH
Confidence 456777776655445666666665543 2223333343333332 4676664333 222244456
Q ss_pred HHHhh-----CCcEEE-CCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAAAA-----GCAVLT-GPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~a~-----G~Pvi~-~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+.. .+|||+ +... +....... .+.|. +++..+-+.++|...|..++.
T Consensus 71 ~~l~~~~~~~~~pii~~s~~~-~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 71 RAILDNSLEQGIAIVMLTAKN-APDAKMIG-LQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp HHHHHTTCCTTEEEEEEECTT-CCCCSSTT-GGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCCCEEEEECCC-CHHHHHHH-HhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 65543 568875 2221 11111111 12221 244556799999999987763
No 134
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=81.25 E-value=6.9 Score=26.83 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=54.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHH--hhCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLY--KLTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y--~~ad~~~v~~s~~e~~gg~~~lE 157 (248)
++++|+.+++.....+...+.+.|..... ......+....+ ..-|++++.... ++..|..+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~--------------~~~~~~~a~~~~~~~~~dlii~d~~l-~~~~g~~~~~ 66 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILA--------------ELTEGGSAVQRVETLKPDIVIIDVDI-PGVNGIQVLE 66 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEE--------------EESSSTTHHHHHHHHCCSEEEEETTC-SSSCHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEE--------------EcCCHHHHHHHHHhcCCCEEEEecCC-CCCChHHHHH
Confidence 45677776655445666666666533210 111111222222 236776664333 2222444444
Q ss_pred HHh---hCCcEEE-CCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAA---AGCAVLT-GPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a---~G~Pvi~-~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+. ...|||+ +... +.......+ ..| .+++..+-+.++|.++|..++.
T Consensus 67 ~l~~~~~~~~ii~~s~~~-~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 67 TLRKRQYSGIIIIVSAKN-DHFYGKHCA-DAGANGFVSKKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp HHHHTTCCSEEEEEECC----CTHHHHH-HTTCSEEEEGGGCTHHHHHHHHHHHT
T ss_pred HHHhcCCCCeEEEEeCCC-ChHHHHHHH-HhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 443 3577875 3221 111122223 333 2455666799999999988775
No 135
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=80.95 E-value=6.9 Score=26.80 Aligned_cols=68 Identities=10% Similarity=0.087 Sum_probs=35.9
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHhh-----CCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAAA-----GCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a~-----G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++-... ++..|..+++.+.. ..|||+-....+. +... ....|. +++..+-+.++|..+|..++.
T Consensus 48 ~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~-~~~~-~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 48 PDVLISDVNM-DGMDGYALCGHFRSEPTLKHIPVIFVSGYAPR-TEGP-ADQPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp CSEEEECSSC-SSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-------TTSCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhCCccCCCCEEEEeCCCcH-hHHH-HhhcCCceEEeccCCHHHHHHHHHHHHh
Confidence 5776664333 22234455555543 6788862221121 2222 222332 355566899999999998885
No 136
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=80.10 E-value=10 Score=29.37 Aligned_cols=111 Identities=11% Similarity=0.163 Sum_probs=54.0
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|... .......+....+. ..|++++--.. ++..|..+++
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v---------------~~~~~~~~al~~l~~~~~dlvilD~~l-~~~~g~~~~~ 69 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDT---------------AVIGDGTQALTAVRELRPDLVLLDLML-PGMNGIDVCR 69 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEE---------------EEECCGGGHHHHHHHHCCSEEEEESSC-SSSCHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEE---------------EEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHH
Confidence 356667665554455555555554431 11222222222222 35776663332 2222344444
Q ss_pred HHh--hCCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAA--AGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a--~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+. .++|||+ +... +.......+..+..+++..+-++++|..+|..++.
T Consensus 70 ~lr~~~~~~ii~lt~~~-~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 70 VLRADSGVPIVMLTAKT-DTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp HHHTTCCCCEEEEEETT-CCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred HHHhCCCCcEEEEeCCC-CHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 443 2678886 2211 11122223322223466677899999999987764
No 137
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=79.55 E-value=10 Score=28.79 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=56.0
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+...+...|.. |.......+....+. ..|+++ . ++..|..+++.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~l~~~~~dlvi-l----p~~~g~~~~~~ 61 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFM---------------ADVTESLEDGEYLMDIRNYDLVM-V----SDKNALSFVSR 61 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCC---------------EEEESSHHHHHHHHTTSCCSEEE-E----CCTTHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcE---------------EEEECCHHHHHHHHhcCCCCEEE-e----CCCCHHHHHHH
Confidence 3566766655445566666554442 222333333333333 357765 2 22234445554
Q ss_pred Hh--h-CCcEEECCCCCChHHHHHHHHhcCCceEEEcC-CHHHHHHHHHHhhhC
Q 043830 159 AA--A-GCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVS-GKSELEEALSQLFSD 208 (248)
Q Consensus 159 ~a--~-G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~l~~~i~~ll~~ 208 (248)
+. . .+|||+-....+.......+..+..|++..+- +.++|..+|..++..
T Consensus 62 lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 62 IKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp HHHHCTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred HHhCCCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 43 2 78888622222333333333322234555667 999999999888754
No 138
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=79.49 E-value=5.1 Score=26.46 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=53.2
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+.+.+...|.. +.......+....+. ..|++++.... ++..|..+++.
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~---------------v~~~~~~~~~~~~l~~~~~dlii~d~~~-~~~~~~~~~~~ 66 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFK---------------VIWLVDGSTALDQLDLLQPIVILMAWPP-PDQSCLLLLQH 66 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCE---------------EEEESCHHHHHHHHHHHCCSEEEEECST-TCCTHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcE---------------EEEecCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHH
Confidence 4666776555445566666655543 222222223322222 35776664333 22224445666
Q ss_pred Hh-----hCCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 159 AA-----AGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 159 ~a-----~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+. ..+|+|+ +...... ...... ..+++..+-+.++|...+..++.
T Consensus 67 l~~~~~~~~~~ii~~~~~~~~~-~~~~~g---~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 67 LREHQADPHPPLVLFLGEPPVD-PLLTAQ---ASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp HHHTCCCSSCCCEEEESSCCSS-HHHHHH---CSEECSSCSTTHHHHHHHHTTCC
T ss_pred HHhccccCCCCEEEEeCCCCch-hhhhcC---HHHhccCCCCHHHHHHHHHHHhc
Confidence 54 4678875 3222111 222222 22244455688899888877654
No 139
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=78.21 E-value=12 Score=24.79 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=35.9
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
.|++++-... ++..|..+++.+. ...|+|+-....+.......+..+..+++..+-+.++|...+..++
T Consensus 46 ~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 46 PDLIILDLGL-PDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp CSEEEEESEE-TTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCcHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 5776653322 2112444555543 3578775222223323333333222345566789999998887665
No 140
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=78.16 E-value=2.4 Score=37.23 Aligned_cols=88 Identities=10% Similarity=0.149 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC------------------
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT------------------ 126 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~------------------ 126 (248)
-|+.|++...+...+.++|+.|.|..- -.+.+++...|++. .+||++|.
T Consensus 205 gllnAlki~gk~l~d~riV~~GAGaAG-igia~ll~~~G~~~------------~~i~l~D~~Gli~~~R~~l~~~~~~~ 271 (487)
T 3nv9_A 205 GLLNALKLVKKDIHECRMVFIGAGSSN-TTCLRLIVTAGADP------------KKIVMFDSKGSLHNGREDIKKDTRFY 271 (487)
T ss_dssp HHHHHHHHHTCCGGGCCEEEECCSHHH-HHHHHHHHHTTCCG------------GGEEEEETTEECCTTCHHHHHCGGGH
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHH-HHHHHHHHHcCCCc------------ccEEEEeccccccCCcchhhhhcccH
Confidence 456666655544567899999987543 35666666778831 12222221
Q ss_pred -------------hhHHHHHHhhCCEEEEcCccC-CCCCCCCHHHHHhhCCcEEE
Q 043830 127 -------------LGELRQLYKLTPIAVIGGSFL-PGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 127 -------------~~~l~~~y~~ad~~~v~~s~~-e~~gg~~~lEA~a~G~Pvi~ 167 (248)
...|.+.+..+|+ |+|.|.. +|.....++++|+ ..|||.
T Consensus 272 ~k~~~A~~~n~~~~~~L~eav~~adV-lIG~S~~~pg~ft~e~V~~Ma-~~PIIF 324 (487)
T 3nv9_A 272 RKWEICETTNPSKFGSIAEACVGADV-LISLSTPGPGVVKAEWIKSMG-EKPIVF 324 (487)
T ss_dssp HHHHHHHHSCTTCCCSHHHHHTTCSE-EEECCCSSCCCCCHHHHHTSC-SSCEEE
T ss_pred HHHHHHHhcccccCCCHHHHHhcCCE-EEEecccCCCCCCHHHHHhhc-CCCEEE
Confidence 1246666777898 6787753 3221233788886 689986
No 141
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=78.12 E-value=13 Score=25.16 Aligned_cols=112 Identities=12% Similarity=0.096 Sum_probs=55.7
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHH--hhCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLY--KLTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y--~~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+.+.+.+.|.. |.......+....+ ..-|++++-... ++..|..+++
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~ 70 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQ---------------VEIAHNGFDAGIKLSTFEPAIMTLDLSM-PKLDGLDVIR 70 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHTCCSEEEEESCB-TTBCHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcE---------------EEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHH
Confidence 45677776555445566666655442 22222222332222 235776664333 2223455566
Q ss_pred HHhh-----CCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAAA-----GCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a~-----G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+.. ..|||+.... ......+.+..+..+++..+-+.++|.++|......
T Consensus 71 ~l~~~~~~~~~~ii~~~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 71 SLRQNKVANQPKILVVSGL-DKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp HHHTTTCSSCCEEEEECCS-CSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred HHHhcCccCCCeEEEEeCC-ChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 5542 3455554332 222333333322223555567999999999877653
No 142
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=77.54 E-value=20 Score=28.22 Aligned_cols=111 Identities=10% Similarity=0.128 Sum_probs=61.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
..+++|+.+++.....+...+.+.|... .....-.+.-..+. .-|++++--.. ++..|..++
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~~v---------------~~a~~~~eal~~l~~~~~dlvl~D~~m-p~~~G~~l~ 192 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGYQC---------------KTANDGVDALNVLSKNHIDIVLSDVNM-PNMDGYRLT 192 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSEE---------------EEECCSHHHHHHHHHSCCSEEEEEESS-CSSCCHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEE---------------EEECCHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHH
Confidence 4678888887665466777777777642 22222223333333 36887663222 223355555
Q ss_pred HHH---hhCCcEEE-CCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAA---AAGCAVLT-GPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~---a~G~Pvi~-~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+ ...+|||+ +... ...... ...+.|. +++..+-+.++|.+.|..++.
T Consensus 193 ~~ir~~~~~~piI~lt~~~-~~~~~~-~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 193 QRIRQLGLTLPVIGVTANA-LAEEKQ-RCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp HHHHHHHCCSCEEEEESST-TSHHHH-HHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEECCC-CHHHHH-HHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 544 34789986 3222 222233 3334443 355556799999999987764
No 143
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=77.29 E-value=34 Score=29.32 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=59.5
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++||-+++.....+...+...|.. |.....-.+.-.++. .-|++++--.. ++..|..+++.
T Consensus 3 ~iLivdD~~~~~~~l~~~L~~~~~~---------------v~~a~~~~~al~~~~~~~~dlvllD~~m-p~~~G~~~~~~ 66 (459)
T 1w25_A 3 RILVVDDIEANVRLLEAKLTAEYYE---------------VSTAMDGPTALAMAARDLPDIILLDVMM-PGMDGFTVCRK 66 (459)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCE---------------EEEECCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHH
Confidence 4667777665445566666554432 222222222222222 35776652222 33335555655
Q ss_pred Hh-----hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCH
Q 043830 159 AA-----AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 159 ~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
+. ..+|||+-....+.....+.+..+..+++..|-+.++|...|..++...
T Consensus 67 l~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 67 LKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp HHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 54 2578886322224333344443333346666789999999999887543
No 144
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=77.27 E-value=3.1 Score=28.36 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=35.4
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh-----hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++-... ++..|..+++.+. ...|||+-....+. +......+.| .+++..+-+.++|...+..++.
T Consensus 47 ~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~-~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 47 PDLILLAWML-PGGSGIQFIKHLRRESMTRDIPVVMLTARGEE-EDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CSEEEEESEE-TTEEHHHHHHHHHTSTTTTTSCEEEEEETTHH-HHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCC-CCCCHHHHHHHHHhCcccCCCCEEEEeCCCCH-HHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 4676653222 2222444555553 46788862221122 2222222223 2356667899999998877663
No 145
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=76.61 E-value=16 Score=25.06 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++--.. ++..|..+++.+. ...|||+-....+.....+.+..+..+++..+-+.++|...|..++.
T Consensus 50 ~dlvilD~~l-p~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 50 PNVVILDIEM-PGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp CSEEEECSSC-SSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CCEEEEecCC-CCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 5787663332 2223444555553 36788862222233333333332222455666899999999987764
No 146
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=76.54 E-value=11 Score=28.70 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=57.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. |.......+....+. ..|++++--.. ++..|..+++
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~~~~ 68 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFE---------------ATVVTDGPAALAEFDRAGADIVLLDLML-PGMSGTDVCK 68 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEECSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCE---------------EEEECCHHHHHHHHhccCCCEEEEECCC-CCCCHHHHHH
Confidence 45677777665445566666655543 222222223222222 36887664333 2222444444
Q ss_pred HHh--hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA--AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a--~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. ...|||+-....+.......+..+..+++..+-++++|..+|..++..
T Consensus 69 ~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 69 QLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHCSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 443 378888632211222223333222224566678999999999888753
No 147
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=76.51 E-value=17 Score=27.09 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=54.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. |.......+....+. ..|++++--.. ++..|..+++
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~ 68 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFE---------------VETFDCASTFLEHRRPEQHGCLVLDMRM-PGMSGIELQE 68 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCE---------------EEEESSHHHHHHHCCTTSCEEEEEESCC-SSSCHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCce---------------EEEcCCHHHHHHhhhccCCCEEEEeCCC-CCCCHHHHHH
Confidence 35666766555445555555554442 122222223323322 24666553222 2223444555
Q ss_pred HHh---hCCcEEE-CCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhhC
Q 043830 158 AAA---AGCAVLT-GPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 158 A~a---~G~Pvi~-~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~~ 208 (248)
.+. .++|||+ +... +.......+ +.|. +++..+-+.++|..+|..++..
T Consensus 69 ~l~~~~~~~~ii~ls~~~-~~~~~~~a~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 69 QLTAISDGIPIVFITAHG-DIPMTVRAM-KAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp HHHHTTCCCCEEEEESCT-TSCCCHHHH-HTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCC-CHHHHHHHH-HCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 443 3678886 2221 111122222 3332 3455567999999999988864
No 148
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=76.07 E-value=11 Score=28.74 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=54.7
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. |.......+....+. ..|++++--.. ++..|..+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~ 66 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFT---------------VDVCYDGEEGMYMALNEPFDVVILDIML-PVHDGWEILK 66 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCE---------------EEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHH
Confidence 35666766555445555555554443 122222222222222 35776663333 2222444455
Q ss_pred HHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+. ..+|||+-....+. +......+.|. +++..+-++++|..++..++.
T Consensus 67 ~lr~~~~~~~ii~ls~~~~~-~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 67 SMRESGVNTPVLMLTALSDV-EYRVKGLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp HHHHTTCCCCEEEEESSCHH-HHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCCCH-HHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 443 36788863222122 22222223332 355556799999999987764
No 149
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=75.55 E-value=8.8 Score=26.60 Aligned_cols=69 Identities=7% Similarity=0.071 Sum_probs=34.8
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh-----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA-----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a-----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++-... ++..|..+++.+. ...|||+-....+.....+. ...|. +++..+-+.++|..+|..++.
T Consensus 47 ~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 47 PDLVILDMDI-IGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNG-LHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CSEEEEETTC-------CHHHHHHTSTTCTTCCEEEEECC----CTTTT-TTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHH-HhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 4776664333 2224666776665 56788862111111111111 22332 355666899999999988874
No 150
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=75.08 E-value=34 Score=28.99 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=58.8
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++||-+++.....+...+...|.. |.....-.+...++. .-|++++--.. ++..|..+++.
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~---------------v~~a~~~~eal~~l~~~~~DlvllD~~m-p~~dG~ell~~ 65 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIK---------------VESAERGKEAYKLLSEKHFNVVLLDLLL-PDVNGLEILKW 65 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCE---------------EEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCE---------------EEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHH
Confidence 4566666554434555555554442 222222223323332 35776653222 22234445555
Q ss_pred Hh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHH
Q 043830 159 AA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARV 211 (248)
Q Consensus 159 ~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~ 211 (248)
+. ..+|||+-...++.....+.+..+..+++..+-+.++|...|..++.....
T Consensus 66 lr~~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l 121 (387)
T 1ny5_A 66 IKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKL 121 (387)
T ss_dssp HHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 43 467888632222443444444322234666678999999999998864433
No 151
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=74.46 E-value=15 Score=28.84 Aligned_cols=46 Identities=7% Similarity=-0.029 Sum_probs=27.5
Q ss_pred CCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 162 GCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 162 G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
..|||+-....+.....+.+..+..|++..+-+.++|..+|..++.
T Consensus 108 ~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 108 ALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 5788862222233334443433333466667899999999988765
No 152
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=73.72 E-value=3.9 Score=28.44 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=53.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh---hCCEEEEcCccCCCCCCCC
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK---LTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~---~ad~~~v~~s~~e~~gg~~ 154 (248)
+..+++|+.+++.....+...+...|.. |.......+....+. ..|++++-..+ ++..|..
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~al~~l~~~~~~dlvilD~~l-~~~~g~~ 77 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAE---------------VTVHPSGSAFFQHRSQLSTCDLLIVSDQL-VDLSIFS 77 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHTGGGGGSCSEEEEETTC-TTSCHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCE---------------EEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHH
Confidence 3456666666554434555555554432 122222223333332 35776663333 2222444
Q ss_pred HHHHHh---hCCcEEE-C-CCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCH
Q 043830 155 ISEAAA---AGCAVLT-G-PHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDA 209 (248)
Q Consensus 155 ~lEA~a---~G~Pvi~-~-~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~ 209 (248)
+++.+. ...|+|+ + ... +... ...+ ..+++..+-+.++|...+..++...
T Consensus 78 ~~~~l~~~~~~~~ii~ls~~~~-~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 78 LLDIVKEQTKQPSVLILTTGRH-ELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp HHHHHTTSSSCCEEEEEESCC---CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred HHHHHHhhCCCCCEEEEECCCC-CHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 555553 3678875 3 221 1111 1111 1225566679999999998887643
No 153
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=73.26 E-value=4.6 Score=34.66 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=47.4
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecc--cCCCCCCcc-------EEEE------cChhHHHHHHhhCCEE
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR--HEKLMPRTN-------VYVV------DTLGELRQLYKLTPIA 140 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~~~~~~-------v~~~------~~~~~l~~~y~~ad~~ 140 (248)
...+.++|++|.|..- ..+.+++...|.......+ |-....... -.|. ...++|.+.+..+|+
T Consensus 189 ~l~~~kVVv~GAGaAG-~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV- 266 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAG-YNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF- 266 (388)
T ss_dssp CTTTCEEEEECCSHHH-HHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE-
T ss_pred CCCCcEEEEECCCHHH-HHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE-
Confidence 4568899999987543 4555666667764332221 101000000 0000 013468999999999
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
|++.|- ++.-....++.|+ ..|||+
T Consensus 267 lIG~Sa-p~l~t~emVk~Ma-~~pIIf 291 (388)
T 1vl6_A 267 FIGVSR-GNILKPEWIKKMS-RKPVIF 291 (388)
T ss_dssp EEECSC-SSCSCHHHHTTSC-SSCEEE
T ss_pred EEEeCC-CCccCHHHHHhcC-CCCEEE
Confidence 566664 4321122577776 578886
No 154
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=72.86 E-value=5 Score=35.95 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCH---HHHHHHHHhcCCc-----eEEe---cccCCCC-----CCccEEEE---c
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHG---KEIAQKLQKEGEV-----VALR---SRHEKLM-----PRTNVYVV---D 125 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~---~~l~~~~~~~~l~-----~~~~---~~~~~~~-----~~~~v~~~---~ 125 (248)
-|+.|++...+...|.++|+.|.|..-. +.+.....+.|++ ..++ +.|-... ...+..|. +
T Consensus 268 gllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~A~~~~ 347 (555)
T 1gq2_A 268 GLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHC 347 (555)
T ss_dssp HHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCC
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHHHHHHHhhcC
Confidence 4667766665556688999999875421 2333333336763 1111 1111100 00011111 1
Q ss_pred ChhHHHHHHhh--CCEEEEcCccCCCCCCCCHHHHHhh--CCcEEE
Q 043830 126 TLGELRQLYKL--TPIAVIGGSFLPGLAGHNISEAAAA--GCAVLT 167 (248)
Q Consensus 126 ~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~lEA~a~--G~Pvi~ 167 (248)
..+.|.+.+.. +|+ |+|.|-..|.....++++|+. -.|||.
T Consensus 348 ~~~~L~eav~~vkp~v-lIG~S~~~g~ft~evv~~Ma~~~~~PIIF 392 (555)
T 1gq2_A 348 EMKNLEDIVKDIKPTV-LIGVAAIGGAFTQQILQDMAAFNKRPIIF 392 (555)
T ss_dssp CCCCHHHHHHHHCCSE-EEECSCCTTCSCHHHHHHHHHHCSSCEEE
T ss_pred CCCCHHHHHhhcCCCE-EEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 23468888886 999 678775443223347999994 899997
No 155
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=72.63 E-value=16 Score=24.81 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=36.1
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh----hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA----AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a----~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++--.. ++..|..+++.+. ...|||+-....+.....+.+ +.|. +++..+-+.++|..++..++.
T Consensus 49 ~dlvllD~~l-~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~-~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 49 PDILLLDIIM-PHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAV-ELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp CSEEEEESCC-SSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHH-HTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CCEEEEecCC-CCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 5776663332 2222444555543 346776522222333333333 3443 355556788999999987764
No 156
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=72.61 E-value=4.6 Score=36.47 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCH---HHHHHHHHhcCCc-----eEEe---cccCCCC-----CCccEEEE---c
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHG---KEIAQKLQKEGEV-----VALR---SRHEKLM-----PRTNVYVV---D 125 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~---~~l~~~~~~~~l~-----~~~~---~~~~~~~-----~~~~v~~~---~ 125 (248)
-|+.|++...+...|.++|+.|.|..-. +.+.....+.|++ ..++ +.|-... ...+..|. +
T Consensus 306 gllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A~~~~ 385 (605)
T 1o0s_A 306 GLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMP 385 (605)
T ss_dssp HHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSC
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHHhhcC
Confidence 4566666555555688999999875421 2233333346763 1111 1111100 00000111 1
Q ss_pred ChhHHHHHHhh--CCEEEEcCccCCCCCCCCHHHHHh--hCCcEEE
Q 043830 126 TLGELRQLYKL--TPIAVIGGSFLPGLAGHNISEAAA--AGCAVLT 167 (248)
Q Consensus 126 ~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~lEA~a--~G~Pvi~ 167 (248)
..+.|.+.+.. +|+ |+|.|-..|.....++++|+ +-.|||.
T Consensus 386 ~~~~L~eav~~vkpdV-lIG~S~~~g~ft~evv~~Ma~~~~~PIIF 430 (605)
T 1o0s_A 386 ETTSILEVIRAARPGA-LIGASTVRGAFNEEVIRAMAEINERPIIF 430 (605)
T ss_dssp CCCCHHHHHHHHCCSE-EEECSSCTTCSCHHHHHHHHHHCSSCEEE
T ss_pred CCCCHHHHHhhcCCCE-EEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 13468888886 999 67877544322334899999 4899997
No 157
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=69.67 E-value=8.9 Score=29.38 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=52.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+++|+.+++.....+...+...|.. |.......+....+. ..|++++-... ++..|..+++
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~---------------v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~ 71 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFE---------------VATAVDGAEALRSATENRPDAIVLDINM-PVLDGVSVVT 71 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHSCCSEEEEESSC-SSSCHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHH
Confidence 46667766555445555555554442 122222223222222 35776663332 2222444455
Q ss_pred HHh---hCCcEEE-CCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 158 AAA---AGCAVLT-GPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 158 A~a---~G~Pvi~-~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.+. ..+|||+ +... +.......+ +.| .+++..+-+.++|..+|..++.
T Consensus 72 ~l~~~~~~~~ii~lt~~~-~~~~~~~~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 72 ALRAMDNDVPVCVLSARS-SVDDRVAGL-EAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp HHHHTTCCCCEEEEECCC-TTTCCCTTT-TTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEcCC-CHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 443 4678875 2211 111111111 222 2355566788999988887764
No 158
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=66.96 E-value=27 Score=28.87 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=50.4
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~ 153 (248)
..|++.++-+.+- . .+..++.++++|++.. + .++.++++. -|++++...-. .-..
T Consensus 45 ~~~~~~lvav~d~-~-~~~a~~~a~~~g~~~~---------------y----~d~~ell~~~~iDaV~I~tP~~--~H~~ 101 (350)
T 4had_A 45 DAENCVVTAIASR-D-LTRAREMADRFSVPHA---------------F----GSYEEMLASDVIDAVYIPLPTS--QHIE 101 (350)
T ss_dssp HCSSEEEEEEECS-S-HHHHHHHHHHHTCSEE---------------E----SSHHHHHHCSSCSEEEECSCGG--GHHH
T ss_pred hCCCeEEEEEECC-C-HHHHHHHHHHcCCCee---------------e----CCHHHHhcCCCCCEEEEeCCCc--hhHH
Confidence 4578887755542 2 2456777778877521 1 245555654 68887743211 1012
Q ss_pred CHHHHHhhCCcEEE----CCCCCChHHHHHHHHhcC
Q 043830 154 NISEAAAAGCAVLT----GPHIGHYSNMVSAMQRLN 185 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~----~~~~~~~~~~~~~~~~~g 185 (248)
.+++|+..|++|++ +.......++++...+.|
T Consensus 102 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 137 (350)
T 4had_A 102 WSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNK 137 (350)
T ss_dssp HHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcC
Confidence 36899999999998 222334555555555555
No 159
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=65.86 E-value=22 Score=23.33 Aligned_cols=107 Identities=16% Similarity=0.259 Sum_probs=51.3
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+...+...|.. +.......+....+. .-|++++--.. ++..|..+++.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~---------------v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~ 66 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYE---------------IDTAENGEEALKKFFSGNYDLVILDIEM-PGISGLEVAGE 66 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE---------------EEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCE---------------EEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHH
Confidence 4566666555445556656555543 222222223323222 25776663332 22224444554
Q ss_pred Hh---hCCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 159 AA---AGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 159 ~a---~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
+. ...|+|+ +... +.. ......+..+++..+-+.++|...+..++
T Consensus 67 l~~~~~~~~ii~~s~~~-~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 67 IRKKKKDAKIILLTAYS-HYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp HHHHCTTCCEEEEESCG-GGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HHccCCCCeEEEEECCc-chH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 43 3578775 3221 111 11111122235666778899988887654
No 160
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=65.82 E-value=39 Score=25.22 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=37.4
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++--.. ++..|..+++.+. ...|||+-....+.......+ +.|. |++..+-++++|..+|..++.
T Consensus 52 ~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 52 PDLILLDLNM-PGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTAL-KRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp CSEEEEETTS-TTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 5776653322 2223444555543 356777522222333333333 3343 455556799999999988875
No 161
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=65.17 E-value=22 Score=27.40 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=44.8
Q ss_pred cEEEEcChh-HHHHHHhhCCEEEEcCccCCCCCCCC-HHHHHhh------CCcEEECCCCCChHHHHHHH---HhcCC--
Q 043830 120 NVYVVDTLG-ELRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAAA------GCAVLTGPHIGHYSNMVSAM---QRLNP-- 186 (248)
Q Consensus 120 ~v~~~~~~~-~l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a~------G~Pvi~~~~~~~~~~~~~~~---~~~g~-- 186 (248)
..+.++++. ....+...||.+++.|. |+|-+. ++|++.. ++||+.-+..+-+....+.+ .+.|.
T Consensus 100 ~~i~~~~~~~Rk~~m~~~sda~IalPG---G~GTldEl~e~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~ 176 (199)
T 3qua_A 100 ELIVTDTMRERKREMEHRSDAFIALPG---GIGTLEEFFEAWTAGYLGMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVS 176 (199)
T ss_dssp EEEEESSHHHHHHHHHHHCSEEEECSC---CHHHHHHHHHHHHHHHTTSCCCCEEEECTTSTTHHHHHHHHHTTTTTSSC
T ss_pred eeEEcCCHHHHHHHHHHhcCccEEeCC---CccHHHHHHHHHHHHHhccCCCCEEEEcCCccchHHHHHHHHHHHCCCCC
Confidence 345556653 34556788999776542 221122 6888884 99999854333455544432 22220
Q ss_pred ----ceEEEcCCHHHHHHHH
Q 043830 187 ----KSVLQVSGKSELEEAL 202 (248)
Q Consensus 187 ----g~~~~~~~~~~l~~~i 202 (248)
..+..++|++++.+.|
T Consensus 177 ~~~~~~i~~~d~~~e~~~~l 196 (199)
T 3qua_A 177 QRAMDSLVVVDNVEAALEAC 196 (199)
T ss_dssp HHHHHTSEEESSHHHHHHHH
T ss_pred HHHCCeEEEeCCHHHHHHHH
Confidence 0234457888776665
No 162
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=64.83 E-value=62 Score=27.13 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=39.6
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
-|++++--.. ++..|..+++.+. ..+|||+-...++.....+.+..+..+++..|-+.++|...|...+.
T Consensus 45 ~DlvllDi~m-P~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 45 FPVIVLDVWM-PDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp CSEEEEESEE-TTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4665542111 3334677776653 46788862222233344444433333466667899999999988774
No 163
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=63.29 E-value=17 Score=25.25 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=34.0
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++-... ++..|..+++.+. ...|||+-....+.......+..+..+++..+-+.++|..+|..++.
T Consensus 50 ~dlvllD~~l-p~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 50 PNVLLTDVRM-PRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CSEEEEESCC-SSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 5887663332 2223444555543 46788862111111111222222222344556799999999987763
No 164
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=62.16 E-value=8.9 Score=29.31 Aligned_cols=74 Identities=14% Similarity=0.035 Sum_probs=43.5
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHh------hCCcEEECCCCCChHHHH---HHHHhcCC------ceEEEc
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAA------AGCAVLTGPHIGHYSNMV---SAMQRLNP------KSVLQV 192 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a------~G~Pvi~~~~~~~~~~~~---~~~~~~g~------g~~~~~ 192 (248)
.-.-+...||.+++.|. |+|-+ -++|++. .++||+.-+..+-+.... +.+.+.|. ..+..+
T Consensus 90 Rk~~~~~~sda~IvlPG---G~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~ 166 (191)
T 1t35_A 90 RKAKMSELADGFISMPG---GFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSS 166 (191)
T ss_dssp HHHHHHHHCSEEEECSC---CHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEE
T ss_pred HHHHHHHHCCEEEEeCC---CccHHHHHHHHHHHHHhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEe
Confidence 44566788999877542 22112 2689996 789999753322343333 33333330 034556
Q ss_pred CCHHHHHHHHHHh
Q 043830 193 SGKSELEEALSQL 205 (248)
Q Consensus 193 ~~~~~l~~~i~~l 205 (248)
+|++++.+.+.+.
T Consensus 167 ~~~~e~~~~l~~~ 179 (191)
T 1t35_A 167 SRPDELIEQMQNY 179 (191)
T ss_dssp SSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHh
Confidence 8999988877653
No 165
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=62.02 E-value=4.7 Score=31.38 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE-ecccCCCCCCccEEEEcChhHHHHHHhhCCEEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL-RSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAV 141 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~ 141 (248)
...|.+|+..+..- ..-++++||..+...+.+++.+...|-.... ++.+.. |++.. + .-+..=|++|
T Consensus 53 ~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~--------LTN~~--~-~~f~~Pdlli 120 (208)
T 1vi6_A 53 DERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGT--------LTNPM--L-SEYREPEVVF 120 (208)
T ss_dssp HHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTT--------TTCTT--S-TTCCCCSEEE
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCc--------ccChh--h-HhhCCCCEEE
Confidence 45666777666544 3456888997665445677777777765332 222110 11110 1 1145678877
Q ss_pred EcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 142 IGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 142 v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
|.....| -+.+.||..+|+|||+
T Consensus 121 V~Dp~~e---~~ai~EA~~l~IPvIa 143 (208)
T 1vi6_A 121 VNDPAID---KQAVSEATAVGIPVVA 143 (208)
T ss_dssp ESCTTTT---HHHHHHHHHTTCCEEE
T ss_pred EECCCcc---hhHHHHHHHhCCCEEE
Confidence 7544333 2568999999999997
No 166
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=60.89 E-value=37 Score=23.19 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=37.3
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEE-CCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLT-GPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~-~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++--.. ++..|..+++.+. ...|+|+ +... +.......+...| .+++..+-+.++|...+..++.
T Consensus 45 ~dlvl~D~~l-p~~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 45 VQVIICDQRM-PGRTGVDFLTEVRERWPETVRIIITGYT-DSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp EEEEEEESCC-SSSCHHHHHHHHHHHCTTSEEEEEESCT-TCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCcHHHHHHHHHHhCCCCcEEEEeCCC-ChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 4666553222 2223444455442 3567775 3222 3333444443332 2466667899999999988774
No 167
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.68 E-value=7.1 Score=30.24 Aligned_cols=89 Identities=10% Similarity=0.081 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceE--EecccCCCCCCccEEEEcChhHHHHHHhhCCEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVA--LRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIA 140 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~--~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~ 140 (248)
.+.|..|+..+....+ -++++||....-...+.+.+...|-... ++..|. |++.. ..-|..=|++
T Consensus 49 ~~~L~~A~~~i~~~~~-~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~---------lTN~~---~~~~~~Pdll 115 (202)
T 3j20_B 49 DERLKVAGKFLAKFEP-QSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGT---------MTNPA---VKNFFEPDVL 115 (202)
T ss_dssp HHHHHHHHHHHHHSCS-SCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSS---------SSCSS---SSSCCCCSEE
T ss_pred HHHHHHHHHHHHhhCC-CeEEEEecChHHHHHHHHHHHHHCCceeCceecCCC---------cccHh---HHhccCCCeE
Confidence 4566777776655433 4677889866654667777776665421 122221 11111 1124567887
Q ss_pred EEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 141 VIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 141 ~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
||.....+ -+.+.||...|+|+|+
T Consensus 116 vv~Dp~~d---~~ai~EA~~l~IP~Ia 139 (202)
T 3j20_B 116 IVTDPRAD---HQAMREAVEIGIPIVA 139 (202)
T ss_dssp EESCTTTS---HHHHHHHHHHTCCEEE
T ss_pred EEeCCccc---hHHHHHHHHcCCCEEE
Confidence 77543333 2458999999999996
No 168
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=60.13 E-value=13 Score=28.49 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=36.7
Q ss_pred CCEEEEcCccCCCCCCCCHHHHH---hhCCcEEECCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAA---AAGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~---a~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++--.. ++..|..+++.+ ....|||+-....+.......+ +.|. |++..+-+.++|..+|..++.
T Consensus 48 ~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 48 PDVAVLDVRL-PDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAI-LAGASGYVVKDIKGMELARAVKDVGA 120 (225)
T ss_dssp CSEEEECSEE-TTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 5776653222 222244444444 3478888732222333333333 3332 344455688999999988875
No 169
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=59.57 E-value=11 Score=33.96 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCH---HHHHHHHHhcCCce------EE--ecccCCCC------CCccEEEE---
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHPQHG---KEIAQKLQKEGEVV------AL--RSRHEKLM------PRTNVYVV--- 124 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~~~~---~~l~~~~~~~~l~~------~~--~~~~~~~~------~~~~v~~~--- 124 (248)
-|+.|++...+...|.++|+.|.|..-. +.+.....+.|++. .. -..|-... ...+..|.
T Consensus 270 gllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~A~~~ 349 (564)
T 1pj3_A 270 GLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSA 349 (564)
T ss_dssp HHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCC
T ss_pred HHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHHHHhc
Confidence 4566666555555688999999875421 23333333467631 11 11111100 00011111
Q ss_pred cCh--hHHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHhh--CCcEEE
Q 043830 125 DTL--GELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAAA--GCAVLT 167 (248)
Q Consensus 125 ~~~--~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a~--G~Pvi~ 167 (248)
+.. +.|.+.+. .+|+ |+|.|-..|.....++++|+. ..|||.
T Consensus 350 ~~~~~~~L~eav~~vkp~v-lIG~S~~~g~ft~evv~~Ma~~~~~PIIF 397 (564)
T 1pj3_A 350 PESIPDTFEDAVNILKPST-IIGVAGAGRLFTPDVIRAMASINERPVIF 397 (564)
T ss_dssp CSSCCSSHHHHHHHHCCSE-EEECCCSSCCSCHHHHHHHHHHCSSCEEE
T ss_pred CccccCCHHHHHhhcCCCE-EEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 111 46888888 4999 678775443223347999996 889997
No 170
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=58.81 E-value=5.1 Score=34.47 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecc--cCCCC------CCccEEEEc------ChhHHH
Q 043830 66 MLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR--HEKLM------PRTNVYVVD------TLGELR 131 (248)
Q Consensus 66 ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~~------~~~~v~~~~------~~~~l~ 131 (248)
++.|++...+..++.++||.|.|.-- -.+.+++..+|......++ |-... ...+-.|.. ....|.
T Consensus 175 ll~al~l~g~~l~d~kVVi~GAGaAG-~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~ 253 (398)
T 2a9f_A 175 IFNSLKLLKKSLDEVSIVVNGGGSAG-LSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLE 253 (398)
T ss_dssp HHHHHHTTTCCTTSCEEEEECCSHHH-HHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCS
T ss_pred HHHHHHHhCCCCCccEEEEECCCHHH-HHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHH
Confidence 34444433334568899999987543 4566667777884333222 10100 000000110 123477
Q ss_pred HHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 132 QLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 132 ~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+.+..||+ |++.|- ++......++.|+ -.|||.
T Consensus 254 eav~~ADV-~IG~Sa-pgl~T~EmVk~Ma-~~pIIf 286 (398)
T 2a9f_A 254 DALEGADI-FIGVSA-PGVLKAEWISKMA-ARPVIF 286 (398)
T ss_dssp HHHHTTCS-EEECCS-TTCCCHHHHHTSC-SSCEEE
T ss_pred HHhccCCE-EEecCC-CCCCCHHHHHhhC-CCCEEE
Confidence 78888999 677764 4321223688888 678887
No 171
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=58.48 E-value=12 Score=29.24 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=42.6
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHhh------CCcEEECCCCCChHHHHH---HHHhcCC------ceEEEc
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAAA------GCAVLTGPHIGHYSNMVS---AMQRLNP------KSVLQV 192 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~------G~Pvi~~~~~~~~~~~~~---~~~~~g~------g~~~~~ 192 (248)
.-.-+...||.+++.|. |+|-+ -++|+++. ++||+.-+..+-+....+ .+.+.|. ..+..+
T Consensus 102 Rk~~~~~~sda~VvlpG---G~GTLdElfE~lt~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~ 178 (215)
T 2a33_A 102 RKAEMAKHSDAFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSA 178 (215)
T ss_dssp HHHHHHHTCSEEEECSC---CHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEE
T ss_pred HHHHHHHhCCEEEEeCC---CCchHHHHHHHHHHHHhCCCCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEe
Confidence 34556788999777532 22112 25788887 899997443233433333 2233331 034567
Q ss_pred CCHHHHHHHHHHhh
Q 043830 193 SGKSELEEALSQLF 206 (248)
Q Consensus 193 ~~~~~l~~~i~~ll 206 (248)
+|++++.+.|.+..
T Consensus 179 d~~ee~~~~l~~~~ 192 (215)
T 2a33_A 179 PTAKELVKKLEEYA 192 (215)
T ss_dssp SSHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHhc
Confidence 99999988886543
No 172
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=58.18 E-value=65 Score=25.21 Aligned_cols=113 Identities=11% Similarity=0.054 Sum_probs=59.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh---CCEEEEcCccCCCCCCCC
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL---TPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~---ad~~~v~~s~~e~~gg~~ 154 (248)
...+++||-+++.....+...+...+.. |.....-.+.-.++.. -|++++--.. ++..|..
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~---------------v~~a~~~~eal~~l~~~~~~dlvllD~~m-P~~dG~~ 186 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQ---------------VHEASHAREALATLEQHPAIRLVLVDYYM-PEIDGIS 186 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCE---------------EEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcE---------------EEEeCCHHHHHHHHhcCCCCCEEEEcCCC-CCCCHHH
Confidence 4578888888665434555555554432 2233333343344432 3676652221 3333445
Q ss_pred HHHHHh-----hCCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 155 ISEAAA-----AGCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 155 ~lEA~a-----~G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+++.+- ..+|||+ +... ........+..+..+++..+-+.++|...+..+++
T Consensus 187 l~~~lr~~~~~~~~~ii~~s~~~-~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 187 LVRMLRERYSKQQLAIIGISVSD-KRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp HHHHHHHHCCTTTSEEEEEECSS-SSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCeEEEEEccC-CHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 555543 2578885 2221 22223333332223466777899999999988774
No 173
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=57.68 E-value=18 Score=28.19 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=47.5
Q ss_pred EEEEcChh-HHHHHHhhCCEEEEcCccCCCCCCCC-HHHHHh------hCCcEEECCCCCChHHHHH---HHHhcCC---
Q 043830 121 VYVVDTLG-ELRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAA------AGCAVLTGPHIGHYSNMVS---AMQRLNP--- 186 (248)
Q Consensus 121 v~~~~~~~-~l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a------~G~Pvi~~~~~~~~~~~~~---~~~~~g~--- 186 (248)
+.+..++. .-..++..||.+++.|. |+|-+. ++|+++ .++||+.-+..+-+....+ .+.+.|.
T Consensus 89 ~~~~~~~~~Rk~~~~~~sda~I~lpG---G~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~ 165 (216)
T 1ydh_A 89 VRVVADMHERKAAMAQEAEAFIALPG---GYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKP 165 (216)
T ss_dssp EEEESSHHHHHHHHHHHCSEEEECSC---SHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCH
T ss_pred ccccCCHHHHHHHHHHhCCEEEEeCC---CccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCh
Confidence 34445443 34566788999777532 221121 577765 6899997543233444333 3333331
Q ss_pred ---ceEEEcCCHHHHHHHHHHhh
Q 043830 187 ---KSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 187 ---g~~~~~~~~~~l~~~i~~ll 206 (248)
..+..++|++++.+.|....
T Consensus 166 ~~~~~~~~~d~~ee~~~~l~~~~ 188 (216)
T 1ydh_A 166 GARNIVVSAPTAKELMEKMEEYT 188 (216)
T ss_dssp HHHTTEEEESSHHHHHHHHHHCC
T ss_pred HHcCeEEEeCCHHHHHHHHHHhc
Confidence 02456799999999887654
No 174
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=57.47 E-value=44 Score=22.98 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=7.8
Q ss_pred CCCCHHHHHh--hCCcEEE
Q 043830 151 AGHNISEAAA--AGCAVLT 167 (248)
Q Consensus 151 gg~~~lEA~a--~G~Pvi~ 167 (248)
.|..+++.+. ...|+++
T Consensus 74 ~g~~~~~~lr~~~~~~iii 92 (145)
T 3kyj_B 74 DGMEFLRHAKLKTRAKICM 92 (145)
T ss_dssp TTCHHHHHHHHHCCCEEC-
T ss_pred CHHHHHHHHHhcCCCCeEE
Confidence 3555555543 2345553
No 175
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=57.43 E-value=75 Score=25.66 Aligned_cols=119 Identities=11% Similarity=0.064 Sum_probs=63.2
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEec----C---------CCCCHHHHHHHHHhcCCceEEecccCCC
Q 043830 49 HRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVP----R---------HPQHGKEIAQKLQKEGEVVALRSRHEKL 115 (248)
Q Consensus 49 ~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG----~---------~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 115 (248)
++++++++--+.++.+.+++.+..+++...+ ++-.+ + +.+....+++.++++|++.....
T Consensus 37 ~~~~vIAgpc~~~~~e~a~~~a~~~k~~ga~--~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~te~----- 109 (276)
T 1vs1_A 37 GSKAVIAGPCSVESWEQVREAALAVKEAGAH--MLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTEV----- 109 (276)
T ss_dssp TBCEEEEECSBCCCHHHHHHHHHHHHHHTCS--EEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEEEEC-----
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHhCCC--EEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEEEec-----
Confidence 4445554423555566777777777665544 33332 1 12223567777889998742211
Q ss_pred CCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHH-HHHhhCCcEEECCCCC-ChHH---HHHHHHhcCC
Q 043830 116 MPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNIS-EAAAAGCAVLTGPHIG-HYSN---MVSAMQRLNP 186 (248)
Q Consensus 116 ~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~l-EA~a~G~Pvi~~~~~~-~~~~---~~~~~~~~g~ 186 (248)
.| ...+..+-...|++=+++..... ..++ ++...|+||+.++... ...+ +++.+...|+
T Consensus 110 --------~d-~~~~~~l~~~vd~~kIgs~~~~n---~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn 173 (276)
T 1vs1_A 110 --------LD-PRHVETVSRYADMLQIGARNMQN---FPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGN 173 (276)
T ss_dssp --------CC-GGGHHHHHHHCSEEEECGGGTTC---HHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTC
T ss_pred --------CC-HHHHHHHHHhCCeEEECcccccC---HHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 01 12334444447887665433322 2345 4555899999976553 3343 4455555553
No 176
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=56.28 E-value=45 Score=22.76 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=54.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhc-CCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKE-GEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~ 155 (248)
..+++|+.+.+.....+...+... +... +.......+....+. ..|++++.... ++..|..+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~--------------v~~~~~~~~al~~l~~~~~dlvi~d~~l-~~~~g~~~ 73 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEI--------------VGSFDDGLDVLKFLQHNKVDAIFLDINI-PSLDGVLL 73 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEE--------------EEEESCHHHHHHHHHHCCCSEEEECSSC-SSSCHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceE--------------EEEeCCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHH
Confidence 356777776655445555555543 3321 112222223333332 35787664333 22224445
Q ss_pred HHHHhh---CCcEEE-CCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 156 SEAAAA---GCAVLT-GPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 156 lEA~a~---G~Pvi~-~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
++.+.. ..|||+ +... . .....+..+..+++..+-+.++|...|..++.
T Consensus 74 ~~~l~~~~~~~~ii~~s~~~-~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 74 AQNISQFAHKPFIVFITAWK-E--HAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp HHHHTTSTTCCEEEEEESCC-T--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHccCCCceEEEEeCCH-H--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 555543 445654 3332 2 22223322222355566799999999987774
No 177
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=54.95 E-value=4.9 Score=32.08 Aligned_cols=90 Identities=8% Similarity=-0.033 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceE---EecccCCCCCCccEEEEcChhHHHHHHhhCCE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVA---LRSRHEKLMPRTNVYVVDTLGELRQLYKLTPI 139 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~---~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~ 139 (248)
...|..|+..+..-...-++++||..+.-...+++.+...|-..+ ++..|. |++... ..+..=|+
T Consensus 50 ~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~---------LTN~~t---~~~~~Pdl 117 (241)
T 2xzm_B 50 WQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGT---------LTNYQT---LKYEEPRV 117 (241)
T ss_dssp HHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTT---------TTCTTC---TTCCCCSE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCc---------ccCccc---cccCCCCE
Confidence 345666666554421234577888754432445666666665432 122221 111110 12456788
Q ss_pred EEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 140 AVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 140 ~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+||.....+ -+.+.||..+|+|||+
T Consensus 118 liV~Dp~~e---~~ai~EA~~l~IPvIa 142 (241)
T 2xzm_B 118 LIVTDPRSD---FQAIKEASYVNIPVIA 142 (241)
T ss_dssp EEESCTTTT---HHHHHHHTTTTCCEEE
T ss_pred EEEECCCcc---hHHHHHHHHhCCCEEE
Confidence 787543333 2468999999999997
No 178
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=54.24 E-value=69 Score=24.29 Aligned_cols=79 Identities=9% Similarity=0.122 Sum_probs=44.0
Q ss_pred EEEEcChh-HHHHHHhhCCEEEEcCccCCCCCCCC-HHHHHh------hCCcEEECCCCCChHHHHH---HHHhcCC---
Q 043830 121 VYVVDTLG-ELRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAA------AGCAVLTGPHIGHYSNMVS---AMQRLNP--- 186 (248)
Q Consensus 121 v~~~~~~~-~l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a------~G~Pvi~~~~~~~~~~~~~---~~~~~g~--- 186 (248)
.+.++++. ....+...||.+++.|. |+|-+. ++|+++ .++||+.-+..+-+....+ .+.+.|.
T Consensus 92 ~i~~~~~~~Rk~~m~~~sda~IalPG---G~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~ 168 (189)
T 3sbx_A 92 LVVTETMWERKQVMEDRANAFITLPG---GVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSR 168 (189)
T ss_dssp EEEESSHHHHHHHHHHHCSEEEECSC---CHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSSCH
T ss_pred eEEcCCHHHHHHHHHHHCCEEEEeCC---CcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCH
Confidence 34555553 34567888999777532 221122 577775 5899998544334544443 3333331
Q ss_pred ---ceEEEcCCHHHHHHHH
Q 043830 187 ---KSVLQVSGKSELEEAL 202 (248)
Q Consensus 187 ---g~~~~~~~~~~l~~~i 202 (248)
..+..++|++++.+.|
T Consensus 169 ~~~~~i~~~d~~ee~~~~l 187 (189)
T 3sbx_A 169 TAMERLIVVDNLDDALQAC 187 (189)
T ss_dssp HHHHHEEEESSHHHHHHHH
T ss_pred HHcCeEEEeCCHHHHHHHh
Confidence 0334557888776655
No 179
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=53.37 E-value=18 Score=30.24 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCeEEEEecC-CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEc
Q 043830 67 LAVHKVLMQKNPNLVTIIVPR-HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIG 143 (248)
Q Consensus 67 l~a~~~l~~~~~~~~lvivG~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~ 143 (248)
+.++..+....+++.++=+-+ .+++ .++.++++|.+.. + .++.++++. .|++++.
T Consensus 44 ~~~~~~~~~~~~~~~lvav~d~~~~~---a~~~a~~~g~~~~---------------y----~d~~ell~~~~iDaV~Ia 101 (393)
T 4fb5_A 44 WNAVKTVFGDVERPRLVHLAEANAGL---AEARAGEFGFEKA---------------T----ADWRALIADPEVDVVSVT 101 (393)
T ss_dssp HTTHHHHHCSSCCCEEEEEECC--TT---HHHHHHHHTCSEE---------------E----SCHHHHHHCTTCCEEEEC
T ss_pred HHhhhhhhccCCCcEEEEEECCCHHH---HHHHHHHhCCCee---------------c----CCHHHHhcCCCCcEEEEC
Confidence 333333444456777665544 3444 4556667776421 1 245555654 6887774
Q ss_pred CccCCCCCCCCHHHHHhhCCcEEE
Q 043830 144 GSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 144 ~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
+.-. +-...+++|+..|++|++
T Consensus 102 tP~~--~H~~~a~~al~aGkhVl~ 123 (393)
T 4fb5_A 102 TPNQ--FHAEMAIAALEAGKHVWC 123 (393)
T ss_dssp SCGG--GHHHHHHHHHHTTCEEEE
T ss_pred CChH--HHHHHHHHHHhcCCeEEE
Confidence 3211 101236999999999998
No 180
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=53.05 E-value=1e+02 Score=26.20 Aligned_cols=119 Identities=11% Similarity=0.045 Sum_probs=62.6
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecC-------------CCCCHHHHHHHHHhcCCceEEecccCCC
Q 043830 49 HRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPR-------------HPQHGKEIAQKLQKEGEVVALRSRHEKL 115 (248)
Q Consensus 49 ~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~-------------~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 115 (248)
++++++++=-.....+..++.+..++... ..++..+. +.+....+.+.+++.|++..... .
T Consensus 141 ~~~~~Iigpcsves~e~a~~~a~~~k~aG--a~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~--~-- 214 (385)
T 3nvt_A 141 GEPVFVFGPCSVESYEQVAAVAESIKAKG--LKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEI--V-- 214 (385)
T ss_dssp SSCEEEEECSBCCCHHHHHHHHHHHHHTT--CCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--C--
T ss_pred CCeEEEEEeCCcCCHHHHHHHHHHHHHcC--CCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEec--C--
Confidence 45555544111124556666666666543 34554442 11123566677788888742110 0
Q ss_pred CCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCH-HHHHhhCCcEEECCCC-CChHH---HHHHHHhcCC
Q 043830 116 MPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNI-SEAAAAGCAVLTGPHI-GHYSN---MVSAMQRLNP 186 (248)
Q Consensus 116 ~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~-lEA~a~G~Pvi~~~~~-~~~~~---~~~~~~~~g~ 186 (248)
+ ...+..+-..+|++=+++..... ..+ -++...|+||+++... ....| +++.+...|+
T Consensus 215 ---------d-~~~~~~l~~~vd~lkIgs~~~~n---~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn 277 (385)
T 3nvt_A 215 ---------T-PADIEVALDYVDVIQIGARNMQN---FELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGN 277 (385)
T ss_dssp ---------S-GGGHHHHTTTCSEEEECGGGTTC---HHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTC
T ss_pred ---------C-HHHHHHHHhhCCEEEECcccccC---HHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 1 12455555668987665433221 233 4567799999997655 44444 3455554443
No 181
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=52.42 E-value=14 Score=29.94 Aligned_cols=113 Identities=11% Similarity=0.018 Sum_probs=57.2
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCC-C
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGH-N 154 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~-~ 154 (248)
..++-++.+||.-|. +.+...+ +.+..+.-... ....+ . ......++..||++++.+|..-+ +.. .
T Consensus 138 ~~~g~kV~vIG~~P~----i~~~l~~-~~~v~V~d~~p----~~g~~-p--~~~~e~ll~~aD~viiTGsTlvN-~Ti~~ 204 (270)
T 2h1q_A 138 EVKGKKVGVVGHFPH----LESLLEP-ICDLSILEWSP----EEGDY-P--LPASEFILPECDYVYITCASVVD-KTLPR 204 (270)
T ss_dssp TTTTSEEEEESCCTT----HHHHHTT-TSEEEEEESSC----CTTCE-E--GGGHHHHGGGCSEEEEETHHHHH-TCHHH
T ss_pred hcCCCEEEEECCCHH----HHHHHhC-CCCEEEEECCC----CCCCC-C--hHHHHHHhhcCCEEEEEeeeeec-CCHHH
Confidence 345678999998643 3333222 33322211111 11111 1 13456678999999987664311 111 2
Q ss_pred HHHHHhhCCcE-EECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHH
Q 043830 155 ISEAAAAGCAV-LTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALS 203 (248)
Q Consensus 155 ~lEA~a~G~Pv-i~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~ 203 (248)
+++-.--++++ ++||.+.-.++..+..++.= ..+.+.|++.+.+.|.
T Consensus 205 lL~~~~~a~~vvl~GPS~p~~P~lf~~Gv~~l--~G~~V~D~~~~~~~i~ 252 (270)
T 2h1q_A 205 LLELSRNARRITLVGPGTPLAPVLFEHGLQEL--SGFMVKDNARAFRIVA 252 (270)
T ss_dssp HHHHTTTSSEEEEESTTCCCCGGGGGTTCSEE--EEEEESCHHHHHHHHT
T ss_pred HHHhCccCCeEEEEecChhhhHHHHhcCcCEE--EEeEecCHHHHHHHHH
Confidence 45555444344 46887655554332222111 3355689988877664
No 182
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=50.65 E-value=6.9 Score=26.25 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=52.2
Q ss_pred EEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHHHH
Q 043830 81 VTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNISEA 158 (248)
Q Consensus 81 ~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA 158 (248)
+++|+.+++.....+...+...|... .......+....+. ..|++++.... ++..|..+++.
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v---------------~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~ 68 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTC---------------TTFENGNEVLAALASKTPDVLLSDIRM-PGMDGLALLKQ 68 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCC---------------EECCCTTHHHHHSSSCCCSCEEECSCS-SHHHHCSTHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEE---------------EEeCCHHHHHHHHhcCCCCEEEEeeec-CCCCHHHHHHH
Confidence 45677776665456666665544431 11122223333333 25776663332 11123445555
Q ss_pred Hh---hCCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhh
Q 043830 159 AA---AGCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 159 ~a---~G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll 206 (248)
+. .+.|+|+-....+.......+ +.| .+++..+-+.++|...+..++
T Consensus 69 l~~~~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~ 119 (124)
T 1dc7_A 69 IKQRHPMLPVIIMTAHSDLDAAVSAY-QQGAFDYLPKPFDIDEAVALVERAI 119 (124)
T ss_dssp HHHHCTTSCCCCBCCSTTSTTTTSSC-TTCCCCCBCSSCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHH-hcCcceEeeCCCCHHHHHHHHHHHH
Confidence 43 467887522111111111111 222 235555679999998887665
No 183
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.65 E-value=11 Score=31.02 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE-ecccCCCCCCccEEEEcChhHHHHHHhhCCEEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL-RSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAV 141 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~ 141 (248)
.+.|..|+..+......-++++||....-...+.+.+...|-..+. ++.+.. |++. ....+..=|++|
T Consensus 59 ~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGt--------LTN~---~t~~f~ePdllv 127 (305)
T 3iz6_A 59 WEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGT--------FTNQ---LQTSFSEPRLLI 127 (305)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTT--------TTTT---TTSCSSCCSEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCc--------ccCc---ccccccCCceeE
Confidence 3456666665543212235778887543324566666666654321 122110 1111 011245668888
Q ss_pred EcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 142 IGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 142 v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
|.....+ -+.+.||..+|+|+|+
T Consensus 128 V~Dp~~d---~qAI~EA~~lnIPtIA 150 (305)
T 3iz6_A 128 LTDPRTD---HQPIKESALGNIPTIA 150 (305)
T ss_dssp ESCTTTT---HHHHHHHHHHTCCEEE
T ss_pred EeCcccc---hHHHHHHHHcCCCEEE
Confidence 7544333 2458999999999996
No 184
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=49.40 E-value=99 Score=24.67 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=58.3
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecC-------------CCCCHHHHHHHHHhcCCceEEecccCCCCC
Q 043830 51 QVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPR-------------HPQHGKEIAQKLQKEGEVVALRSRHEKLMP 117 (248)
Q Consensus 51 ~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~-------------~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 117 (248)
++++++-.+.++.+..++.+..+++..-+ +|-.+. +.+....+++.+++.|++.....
T Consensus 24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~--~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~------- 94 (262)
T 1zco_A 24 FTIIAGPCSIESREQIMKVAEFLAEVGIK--VLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEV------- 94 (262)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHTTCC--EEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC-------
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHcCCC--EEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEee-------
Confidence 55555544555566777777777665433 333332 11123567777888898742111
Q ss_pred CccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHH-HHHhhCCcEEECCCCC-ChHHH
Q 043830 118 RTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNIS-EAAAAGCAVLTGPHIG-HYSNM 177 (248)
Q Consensus 118 ~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~l-EA~a~G~Pvi~~~~~~-~~~~~ 177 (248)
.++ ..+..+-...|++=+++..... ..++ |....|+||++.+... +..++
T Consensus 95 ------~d~-~~~~~l~~~vd~~kIga~~~~n---~~ll~~~a~~~kPV~lk~G~~~t~~e~ 146 (262)
T 1zco_A 95 ------MDT-RHVELVAKYSDILQIGARNSQN---FELLKEVGKVENPVLLKRGMGNTIQEL 146 (262)
T ss_dssp ------CCG-GGHHHHHHHCSEEEECGGGTTC---HHHHHHHTTSSSCEEEECCTTCCHHHH
T ss_pred ------CCH-HhHHHHHhhCCEEEECcccccC---HHHHHHHHhcCCcEEEecCCCCCHHHH
Confidence 011 1333343447887665443321 2334 4555899999976553 55553
No 185
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=49.35 E-value=7.3 Score=31.23 Aligned_cols=91 Identities=8% Similarity=0.092 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE-ecccCCCCCCccEEEEcChhHHHHHHhhCCEEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL-RSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAV 141 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~ 141 (248)
...|..|+..+..-...-++++||....-...+.+.+...|-..+. ++.+. .|++... .-+..=|++|
T Consensus 54 ~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgG--------tLTN~~t---~~f~~Pdllv 122 (252)
T 3u5c_A 54 WEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPG--------SFTNYIT---RSFKEPRLVI 122 (252)
T ss_dssp HHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTT--------SSSCTTS---TTCCCCSEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCC--------cccChhh---hhccCCceEE
Confidence 3456666665543212235677887544324566667776654322 22211 0111111 2245678887
Q ss_pred EcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 142 IGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 142 v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
|.....+ -+.+.||...|+|+|+
T Consensus 123 V~Dp~~d---~~ai~EA~~l~IP~Ia 145 (252)
T 3u5c_A 123 VTDPRSD---AQAIKEASYVNIPVIA 145 (252)
T ss_dssp ESCTTTT---HHHHHHHHTTTCCEEE
T ss_pred EeCCccc---hHHHHHHHHcCCCEEE
Confidence 7543333 2458999999999996
No 186
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=48.34 E-value=19 Score=30.57 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=48.3
Q ss_pred HHHHHHhhCCEEEEc-CccCCCCCCCCHHHHHhhCC-cEEECCCCCChHHHHHHHHhcCCceEEEc---CCHHHHHHHHH
Q 043830 129 ELRQLYKLTPIAVIG-GSFLPGLAGHNISEAAAAGC-AVLTGPHIGHYSNMVSAMQRLNPKSVLQV---SGKSELEEALS 203 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~-~s~~e~~gg~~~lEA~a~G~-Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~---~~~~~l~~~i~ 203 (248)
+...+++.-...+.+ -|..++.-.-.+.+|+.+|+ ||+.|.. +.. +.+ ..+ ..+.+ .++++|++-|.
T Consensus 224 ~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~--~~~---~~~-Pp~--SfI~~~dF~s~~~La~yL~ 295 (371)
T 2nzw_A 224 NKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSP--SVA---KDF-NPK--SFVNVHDFKNFDEAIDYIK 295 (371)
T ss_dssp CHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCT--TGG---GTS-CGG--GSEEGGGSSSHHHHHHHHH
T ss_pred cHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCC--chh---hhC-CCC--ceEEcccCCCHHHHHHHHH
Confidence 344555554443332 23333321223789999995 9998753 332 122 222 34444 79999999999
Q ss_pred HhhhCHHHHHHHH
Q 043830 204 QLFSDARVLEAQQ 216 (248)
Q Consensus 204 ~ll~~~~~~~~~~ 216 (248)
.|-+|+++..+.-
T Consensus 296 ~L~~n~~~Y~~y~ 308 (371)
T 2nzw_A 296 YLHTHKNAYLDML 308 (371)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHhcCHHHHHHHH
Confidence 9999999876643
No 187
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=47.70 E-value=1.2e+02 Score=25.20 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=37.1
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh---hCCcEEECCCCCChHHHHHHHHhcCC-ceEEEc-CCHHHHHHHHHHhhhCHH
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA---AGCAVLTGPHIGHYSNMVSAMQRLNP-KSVLQV-SGKSELEEALSQLFSDAR 210 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a---~G~Pvi~~~~~~~~~~~~~~~~~~g~-g~~~~~-~~~~~l~~~i~~ll~~~~ 210 (248)
-|++++--.. ++..|..+++.+- -.+|||+-....+.....+.+ +.|. +++..+ .+.+.|...|..++....
T Consensus 50 ~dlvllD~~m-p~~~G~~~~~~lr~~~~~~pii~lt~~~~~~~~~~a~-~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 50 PDLVICDLRM-PQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEAL-RLGAADYLIKPLEDLAVLEHSVRRALDRAY 126 (394)
T ss_dssp CSEEEECCCS-SSSCTHHHHHHHHHTTCCCCEEEC---CHHHHHHHHH-HHTCSEECCSSCSCTHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCC-CCCCHHHHHHHHHhhCCCCcEEEEEcCCCHHHHHHHH-hcChhhEEECCCChHHHHHHHHHHHHhhhh
Confidence 4665552111 3333555555543 368999733222232333333 3342 344444 368899999988886543
No 188
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=46.85 E-value=1.1e+02 Score=24.29 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=65.9
Q ss_pred HHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEE
Q 043830 4 QAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTI 83 (248)
Q Consensus 4 ~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lv 83 (248)
+.+.+.+.|++--.+.|.- +.|-+... .-+...+++|+..++.++-+-...... +..++.+.+ ...|+..+
T Consensus 45 ~i~~l~~~G~d~lHvDVmD-g~FVpnit---~G~~~v~~lr~~~p~~~ldvHLmv~~p--~~~i~~~~~---aGAd~itv 115 (246)
T 3inp_A 45 DVKAVLAAGADNIHFDVMD-NHYVPNLT---FGPMVLKALRDYGITAGMDVHLMVKPV--DALIESFAK---AGATSIVF 115 (246)
T ss_dssp HHHHHHHTTCCCEEEEEEB-SSSSSCBC---CCHHHHHHHHHHTCCSCEEEEEECSSC--HHHHHHHHH---HTCSEEEE
T ss_pred HHHHHHHcCCCEEEEEecC-CCcCcchh---cCHHHHHHHHHhCCCCeEEEEEeeCCH--HHHHHHHHH---cCCCEEEE
Confidence 3445556677655555542 12222211 112346777766545665442222222 234566543 35565333
Q ss_pred EecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHH
Q 043830 84 IVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 84 ivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~l 156 (248)
- ........+..+.+++.|....+-..- .+ +.+.+..+....|.+++. |..+||+|+..+
T Consensus 116 H-~Ea~~~~~~~i~~ir~~G~k~Gvalnp-----~T------p~e~l~~~l~~vD~VlvM-sV~PGfgGQ~fi 175 (246)
T 3inp_A 116 H-PEASEHIDRSLQLIKSFGIQAGLALNP-----AT------GIDCLKYVESNIDRVLIM-SVNPGFGGQKFI 175 (246)
T ss_dssp C-GGGCSCHHHHHHHHHTTTSEEEEEECT-----TC------CSGGGTTTGGGCSEEEEE-CSCTTC--CCCC
T ss_pred c-cccchhHHHHHHHHHHcCCeEEEEecC-----CC------CHHHHHHHHhcCCEEEEe-eecCCCCCcccc
Confidence 2 222234466777788888864332110 11 234666778889987664 555788887543
No 189
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=46.27 E-value=37 Score=27.00 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHhhCCEEEEcCccCCCCCCC-CHHHHHhhCCc-EEECCCCCChHHHH-HHHHhcCCceEEEcCCHHHHHHHHH
Q 043830 132 QLYKLTPIAVIGGSFLPGLAGH-NISEAAAAGCA-VLTGPHIGHYSNMV-SAMQRLNPKSVLQVSGKSELEEALS 203 (248)
Q Consensus 132 ~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~P-vi~~~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~l~~~i~ 203 (248)
.++..||++++.+|..=+ +.. .++|-.--+.+ |++||.+.-.++.. +..++.= ....+.|++.+.+.|.
T Consensus 160 ~~l~~~D~v~iTGsTlvN-~Ti~~lL~~~~~~~~vvl~GPS~~~~P~~~~~~Gv~~l--~g~~v~d~~~~l~~i~ 231 (249)
T 3npg_A 160 HILPEVDGIIASASCIVN-GTLDMILDRAKKAKLIVITGPTGQLLPEFLKGTKVTHL--ASMKVTNIEKALVKLK 231 (249)
T ss_dssp HHGGGCSEEEEETTHHHH-TCHHHHHHHCSSCSEEEEESGGGCSCGGGGTTSSCCEE--EEEEESCHHHHHHHHH
T ss_pred hhhccCCEEEEEeeeecc-CCHHHHHHhCcccCeEEEEecCchhhHHHHhhCCccEE--EEEEecCHHHHHHHHH
Confidence 578899999987664211 111 24555555656 66788765555432 1112111 2355689998877774
No 190
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=46.12 E-value=15 Score=30.09 Aligned_cols=91 Identities=7% Similarity=0.089 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE-ecccCCCCCCccEEEEcChhHHHHHHhhCCEEE
Q 043830 63 EKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL-RSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAV 141 (248)
Q Consensus 63 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~ 141 (248)
...|..|+..+......-++++||..+.-...+++.+...|-..+. ++.+. .|++... .-+..=|++|
T Consensus 55 ~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG--------~LTN~~t---~~f~~Pdlli 123 (295)
T 2zkq_b 55 WEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPG--------TFTNQIQ---AAFREPRLLV 123 (295)
T ss_dssp HHHHHHHHHHHHHSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC---------CCCTTC---SSCCCCSEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecc--------cccCccc---ccccCCCeEE
Confidence 3456666665552222345778887443324566667776665332 22211 1222111 1245577877
Q ss_pred EcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 142 IGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 142 v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
|.....+ -+.+.||..+|+|||+
T Consensus 124 V~Dp~~e---~~AI~EA~~lgIPvIa 146 (295)
T 2zkq_b 124 VTDPRAD---HQPLTEASYVNLPTIA 146 (295)
T ss_dssp ESCTTTT---HHHHHHHHHHTCCEEE
T ss_pred EeCCCcc---hhHHHHHHHhCCCEEE
Confidence 7543333 2468999999999996
No 191
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=45.31 E-value=8.1 Score=30.99 Aligned_cols=90 Identities=7% Similarity=0.113 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEE-ecccCCCCCCccEEEEcChhHHHHHHhhCCEEEE
Q 043830 64 KVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVAL-RSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 64 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
..|.+|+..+......-++++||....-...+++.+...|-..+. ++.+.. |++... .-+..=|++||
T Consensus 89 ~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~--------LTN~~~---~~f~~PdlliV 157 (253)
T 3bch_A 89 EKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGT--------FTNQIQ---AAFREPRLLVV 157 (253)
T ss_dssp HHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTT--------TTCCSC---STTCSCSEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCc--------ccCccc---cccCCCCEEEE
Confidence 456666666542112345778887544324566777777665332 222211 111100 12455788777
Q ss_pred cCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 143 GGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 143 ~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.....+ -+.+.||..+|+|||+
T Consensus 158 ~Dp~~e---~~AI~EA~~lgIPvIa 179 (253)
T 3bch_A 158 TDPRAD---HQPLTEASYVNLPTIA 179 (253)
T ss_dssp SCTTTT---HHHHHHHHHTTCCEEE
T ss_pred ECCCcc---chHHHHHHHhCCCEEE
Confidence 543333 2468999999999997
No 192
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=45.02 E-value=1.2e+02 Score=24.26 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcC
Q 043830 67 LAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGG 144 (248)
Q Consensus 67 l~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~ 144 (248)
-++...+.. ....+++++-+.+.....+...++..|..... ....-.+--..+. .-|++++--
T Consensus 149 ~rA~~~Lr~-~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~--------------~a~~g~eAl~~~~~~~~dlvl~D~ 213 (286)
T 3n0r_A 149 GDAQAEIDA-ELATEVLIIEDEPVIAADIEALVRELGHDVTD--------------IAATRGEALEAVTRRTPGLVLADI 213 (286)
T ss_dssp HHHHHHHHT-SCCCEEEEECCSHHHHHHHHHHHHHTTCEEEE--------------EESSHHHHHHHHHHCCCSEEEEES
T ss_pred HHHHhhhhc-cCCCcEEEEcCCHHHHHHHHHHhhccCceEEE--------------EeCCHHHHHHHHHhCCCCEEEEcC
Confidence 344444443 33457788888766546677777777764320 2222122222232 368866521
Q ss_pred ccCC-CCCCCCHHHHHhh--CCcEEECCCCCChHHHHHHHHhcC-CceEEEcCCHHHHHHHHHHhhh
Q 043830 145 SFLP-GLAGHNISEAAAA--GCAVLTGPHIGHYSNMVSAMQRLN-PKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 145 s~~e-~~gg~~~lEA~a~--G~Pvi~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
. .+ ++.|..++..+-. .+|||+-....+ .... ..+.| .+++..|-++++|...|..++.
T Consensus 214 ~-MPd~mdG~e~~~~ir~~~~~piI~lT~~~~--~~~~-~~~~G~~~~l~KP~~~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 214 Q-LADGSSGIDAVKDILGRMDVPVIFITAFPE--RLLT-GERPEPTFLITKPFQPETVKAAIGQALF 276 (286)
T ss_dssp C-CTTSCCTTTTTHHHHHHTTCCEEEEESCGG--GGCC-SSSCCCSSEEESSCCHHHHHHHHHHHHH
T ss_pred C-CCCCCCHHHHHHHHHhcCCCCEEEEeCCHH--HHHH-HHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 1 14 3456554443222 899997221111 1111 11222 2356667899999999998885
No 193
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=43.64 E-value=65 Score=21.71 Aligned_cols=51 Identities=6% Similarity=0.001 Sum_probs=30.9
Q ss_pred EEEecCCCCC---HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCcc
Q 043830 82 TIIVPRHPQH---GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSF 146 (248)
Q Consensus 82 lvivG~~~~~---~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~ 146 (248)
++++|.|... ...+++.+++.|++..+. -. ..+++......+|+++++|-+
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~-------------a~-~~~~~~~~~~~~Dvil~~pqv 60 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIE-------------AF-PETLAGEKGQNADVVLLGPQI 60 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEE-------------EE-CSSSTTHHHHHCSEEEECTTS
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEE-------------Ee-cHHHHHhhccCCCEEEEccch
Confidence 4556666543 256778888888864221 11 123555567889998776544
No 194
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=41.53 E-value=40 Score=21.74 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=13.6
Q ss_pred EcCCHHHHHHHHHHhhh
Q 043830 191 QVSGKSELEEALSQLFS 207 (248)
Q Consensus 191 ~~~~~~~l~~~i~~ll~ 207 (248)
...|+++|.+.+.++|.
T Consensus 84 kstdpeeltqrvreflk 100 (112)
T 2lnd_A 84 KSTDPEELTQRVREFLK 100 (112)
T ss_dssp ECCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 34799999998887773
No 195
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=40.67 E-value=1.1e+02 Score=25.24 Aligned_cols=68 Identities=10% Similarity=0.018 Sum_probs=39.6
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHH--hhCCEEEEcCccCCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLY--KLTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y--~~ad~~~v~~s~~e~~gg~ 153 (248)
..|++.++-+-+. . .+..++.+.+.|++. +.++.+++ ...|++++..... ....
T Consensus 26 ~~~~~~lvav~d~-~-~~~~~~~~~~~g~~~--------------------~~~~~~~l~~~~~D~V~i~tp~~--~h~~ 81 (354)
T 3db2_A 26 KSEKLKLVTCYSR-T-EDKREKFGKRYNCAG--------------------DATMEALLAREDVEMVIITVPND--KHAE 81 (354)
T ss_dssp TCSSEEEEEEECS-S-HHHHHHHHHHHTCCC--------------------CSSHHHHHHCSSCCEEEECSCTT--SHHH
T ss_pred hCCCcEEEEEECC-C-HHHHHHHHHHcCCCC--------------------cCCHHHHhcCCCCCEEEEeCChH--HHHH
Confidence 4577877644332 2 144555666666531 12456667 4589987743211 1112
Q ss_pred CHHHHHhhCCcEEE
Q 043830 154 NISEAAAAGCAVLT 167 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~ 167 (248)
.+.+|+..|++|++
T Consensus 82 ~~~~al~~gk~vl~ 95 (354)
T 3db2_A 82 VIEQCARSGKHIYV 95 (354)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCEEEE
Confidence 36889999999998
No 196
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=40.65 E-value=50 Score=22.50 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=16.1
Q ss_pred eEEEcCCHHHHHHHHHHhhh
Q 043830 188 SVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll~ 207 (248)
++..+-+.++|..+|..++.
T Consensus 110 ~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 110 YVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp EEESSCCHHHHHHHHHHHHC
T ss_pred eEeCCCCHHHHHHHHHHHhC
Confidence 56667899999999987774
No 197
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=40.40 E-value=96 Score=26.34 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=40.0
Q ss_pred CCCeEEEE-e-cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh-------CCEEEEcCccC
Q 043830 77 NPNLVTII-V-PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL-------TPIAVIGGSFL 147 (248)
Q Consensus 77 ~~~~~lvi-v-G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~-------ad~~~v~~s~~ 147 (248)
.+++.++- + ...+ +..++.++++|++.. ++ +.++.++++. .|++++.....
T Consensus 62 ~~~~~lva~v~d~~~---~~a~~~a~~~g~~~~------------~~-----~~~~~~ll~~~~~~~~~vD~V~I~tp~~ 121 (417)
T 3v5n_A 62 DDHYELVAGALSSTP---EKAEASGRELGLDPS------------RV-----YSDFKEMAIREAKLKNGIEAVAIVTPNH 121 (417)
T ss_dssp TSCEEEEEEECCSSH---HHHHHHHHHHTCCGG------------GB-----CSCHHHHHHHHHHCTTCCSEEEECSCTT
T ss_pred CCCcEEEEEEeCCCH---HHHHHHHHHcCCCcc------------cc-----cCCHHHHHhcccccCCCCcEEEECCCcH
Confidence 46677653 3 3322 456666777776410 01 1245666766 89988743221
Q ss_pred CCCCCCCHHHHHhhCCcEEE
Q 043830 148 PGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 148 e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.-...+.+|+..|++|++
T Consensus 122 --~H~~~~~~al~aGkhVl~ 139 (417)
T 3v5n_A 122 --VHYAAAKEFLKRGIHVIC 139 (417)
T ss_dssp --SHHHHHHHHHTTTCEEEE
T ss_pred --HHHHHHHHHHhCCCeEEE
Confidence 111236899999999998
No 198
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=40.38 E-value=1.4e+02 Score=24.40 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=34.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHH--HHHhhCCEEEE
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELR--QLYKLTPIAVI 142 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~--~~y~~ad~~~v 142 (248)
..-+.+|+|++.--...+..++...|-. |.+.+. ..++. ++.+.||++|.
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAt---------------Vtv~~~~T~~l~l~~~~~~ADIVI~ 216 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKENAT---------------VTIVHSGTSTEDMIDYLRTADIVIA 216 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCE---------------EEEECTTSCHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCe---------------EEEEeCCCCCchhhhhhccCCEEEE
Confidence 3557899998765556677777666543 344442 24777 99999999765
No 199
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=40.09 E-value=30 Score=27.78 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=24.5
Q ss_pred HHHHHHHHh-CCCeEEEEecCCCCCHHHHHHHHHhcCCceE
Q 043830 68 AVHKVLMQK-NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVA 107 (248)
Q Consensus 68 ~a~~~l~~~-~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~ 107 (248)
+.|..++++ .++..+++||+|.++ ++.+++++.+..
T Consensus 218 sCFerI~~RFG~k~~yvvIGDG~eE----e~AAk~~n~PFw 254 (274)
T 3geb_A 218 SCFERIMQRFGRKAVYVVIGDGVEE----EQGAKKHNMPFW 254 (274)
T ss_dssp HHHHHHHHHHCTTSEEEEEESSHHH----HHHHHHTTCCEE
T ss_pred HHHHHHHHHhCCCceEEEECCCHHH----HHHHHHcCCCeE
Confidence 455556665 478999999998754 234567777643
No 200
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=39.92 E-value=1.6e+02 Score=24.29 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=56.1
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCC-HHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh
Q 043830 49 HRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQH-GKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL 127 (248)
Q Consensus 49 ~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~-~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 127 (248)
+..+++.-+... .++..+....+...++++++.-.-|.. ...+...+.+.|++. .+++|
T Consensus 121 ~g~~ILTh~~S~----tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~v--------------tli~D-- 180 (315)
T 3ecs_A 121 DGATILTHAYSR----VVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPV--------------TVVLD-- 180 (315)
T ss_dssp TTEEEEECSCCH----HHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCE--------------EEECG--
T ss_pred CCCEEEEcCCcH----HHHHHHHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCCE--------------EEEeh--
Confidence 444555433321 333333333444567887666554542 234555556667753 24444
Q ss_pred hHHHHHHhhCCEEEEcCcc-CCCCCCC--------CHHHHHhhCCcEEE
Q 043830 128 GELRQLYKLTPIAVIGGSF-LPGLAGH--------NISEAAAAGCAVLT 167 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~~s~-~e~~gg~--------~~lEA~a~G~Pvi~ 167 (248)
+.+..+|+..|.+++|... ... |+. ..+=|-..|+|+++
T Consensus 181 sa~~~~m~~vd~VivGAd~i~~n-G~v~nkiGT~~iAl~Ak~~~vP~~V 228 (315)
T 3ecs_A 181 AAVGYIMEKADLVIVGAEGVVEN-GGIINKIGTNQMAVCAKAQNKPFYV 228 (315)
T ss_dssp GGHHHHGGGCSEEEEECSEECTT-SCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHhCCEEEECceEEecC-CCeeehhhhHHHHHHHHHhCCCEEE
Confidence 4577889999999987652 332 221 23567789999987
No 201
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=39.89 E-value=1.3e+02 Score=24.46 Aligned_cols=67 Identities=10% Similarity=0.032 Sum_probs=39.3
Q ss_pred CCCeEEEEe-cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCC
Q 043830 77 NPNLVTIIV-PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 77 ~~~~~lviv-G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~ 153 (248)
.+++.++-+ ...+ +..++.+++.+... .. .++.++++ ..|++++..... ....
T Consensus 24 ~~~~~l~av~d~~~---~~~~~~~~~~~~~~----------------~~---~~~~~ll~~~~~D~V~i~tp~~--~h~~ 79 (344)
T 3ezy_A 24 IDDAILYAISDVRE---DRLREMKEKLGVEK----------------AY---KDPHELIEDPNVDAVLVCSSTN--THSE 79 (344)
T ss_dssp STTEEEEEEECSCH---HHHHHHHHHHTCSE----------------EE---SSHHHHHHCTTCCEEEECSCGG--GHHH
T ss_pred CCCcEEEEEECCCH---HHHHHHHHHhCCCc----------------ee---CCHHHHhcCCCCCEEEEcCCCc--chHH
Confidence 577777644 3332 44555566666531 11 24566677 789988743211 1012
Q ss_pred CHHHHHhhCCcEEE
Q 043830 154 NISEAAAAGCAVLT 167 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~ 167 (248)
.+.+++..|++|++
T Consensus 80 ~~~~al~~gk~v~~ 93 (344)
T 3ezy_A 80 LVIACAKAKKHVFC 93 (344)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCeEEE
Confidence 36889999999998
No 202
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=39.58 E-value=69 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=21.8
Q ss_pred hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEEC
Q 043830 136 LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~ 168 (248)
.=|++||.....| -..+.||..+|+|||+-
T Consensus 157 ~Pdll~v~Dp~~e---~~ai~EA~~l~IPvIai 186 (231)
T 3bbn_B 157 LPDIVIIVDQQEE---YTALRECITLGIPTICL 186 (231)
T ss_dssp CCSEEEESCTTTT---HHHHHHHHTTTCCEEEC
T ss_pred CCCEEEEeCCccc---cHHHHHHHHhCCCEEEE
Confidence 4678777543333 24689999999999973
No 203
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=39.45 E-value=1.8e+02 Score=24.76 Aligned_cols=78 Identities=8% Similarity=0.024 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh--hHHHHHHhh-CCEEEEcCccCCCCCCCCHHHHHh-hCCcE
Q 043830 90 QHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL--GELRQLYKL-TPIAVIGGSFLPGLAGHNISEAAA-AGCAV 165 (248)
Q Consensus 90 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~y~~-ad~~~v~~s~~e~~gg~~~lEA~a-~G~Pv 165 (248)
+....|.+.+++.|+.. +..++ ..+..+-.. .|++=++ |. + +.-..+++.++ .|+||
T Consensus 101 e~~~~L~~~~~~~Gi~~----------------~stpfD~~svd~l~~~~vd~~KIg-S~-~-~~N~pLL~~va~~gKPV 161 (385)
T 1vli_A 101 EWILPLLDYCREKQVIF----------------LSTVCDEGSADLLQSTSPSAFKIA-SY-E-INHLPLLKYVARLNRPM 161 (385)
T ss_dssp GGHHHHHHHHHHTTCEE----------------ECBCCSHHHHHHHHTTCCSCEEEC-GG-G-TTCHHHHHHHHTTCSCE
T ss_pred HHHHHHHHHHHHcCCcE----------------EEccCCHHHHHHHHhcCCCEEEEC-cc-c-ccCHHHHHHHHhcCCeE
Confidence 34467778888888863 22211 244444444 6775553 43 2 21234576554 79999
Q ss_pred EECCCCCChHH---HHHHHHhcCC
Q 043830 166 LTGPHIGHYSN---MVSAMQRLNP 186 (248)
Q Consensus 166 i~~~~~~~~~~---~~~~~~~~g~ 186 (248)
|.+.......| +++.+...|+
T Consensus 162 iLStGmaTl~Ei~~Ave~i~~~Gn 185 (385)
T 1vli_A 162 IFSTAGAEISDVHEAWRTIRAEGN 185 (385)
T ss_dssp EEECTTCCHHHHHHHHHHHHTTTC
T ss_pred EEECCCCCHHHHHHHHHHHHHCCC
Confidence 99876656665 3455555443
No 204
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=39.23 E-value=1.3e+02 Score=23.25 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=66.1
Q ss_pred HHHHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhc-CCCeEEEEeCC-CcchHHHHHHHHHHHHHhCCCeE
Q 043830 4 QAIRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASL-AHRQVWMASSI-HRGEEKVMLAVHKVLMQKNPNLV 81 (248)
Q Consensus 4 ~~~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~-~~~~v~l~~~~-~~~~~~~ll~a~~~l~~~~~~~~ 81 (248)
+.+.+.+.|.+--.+.|.- +.|-+... .-+...+++|+.+ .+.++-+-... .+. ..++.+.+ ...|+.
T Consensus 22 ~i~~l~~~g~d~~h~DVmD-g~Fvpn~~---~G~~~v~~ir~~~~~~~~~dvhLmv~~p~---~~i~~~~~---aGad~i 91 (228)
T 3ovp_A 22 ECLRMLDSGADYLHLDVMD-GHFVPNIT---FGHPVVESLRKQLGQDPFFDMHMMVSKPE---QWVKPMAV---AGANQY 91 (228)
T ss_dssp HHHHHHHTTCSCEEEEEEB-SSSSSCBC---BCHHHHHHHHHHHCSSSCEEEEEECSCGG---GGHHHHHH---HTCSEE
T ss_pred HHHHHHHcCCCEEEEEecC-CCcCcccc---cCHHHHHHHHHhhCCCCcEEEEEEeCCHH---HHHHHHHH---cCCCEE
Confidence 3445566777655555542 22322221 1123467788776 45555432222 222 23455433 355654
Q ss_pred EEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHH
Q 043830 82 TIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 82 lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~l 156 (248)
.+- +.......+..+.+++.|....+-.. +.+ +.+.+..+....|.+++. |..+||+|+...
T Consensus 92 tvH-~Ea~~~~~~~i~~i~~~G~k~gval~-----p~t------~~e~l~~~l~~~D~Vl~m-sv~pGf~Gq~f~ 153 (228)
T 3ovp_A 92 TFH-LEATENPGALIKDIRENGMKVGLAIK-----PGT------SVEYLAPWANQIDMALVM-TVEPGFGGQKFM 153 (228)
T ss_dssp EEE-GGGCSCHHHHHHHHHHTTCEEEEEEC-----TTS------CGGGTGGGGGGCSEEEEE-SSCTTTCSCCCC
T ss_pred EEc-cCCchhHHHHHHHHHHcCCCEEEEEc-----CCC------CHHHHHHHhccCCeEEEe-eecCCCCCcccC
Confidence 333 22223446677778888876432211 011 234566777789986654 455788887643
No 205
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=39.06 E-value=31 Score=25.49 Aligned_cols=14 Identities=7% Similarity=-0.190 Sum_probs=9.2
Q ss_pred HHHhhCCEEEEcCc
Q 043830 132 QLYKLTPIAVIGGS 145 (248)
Q Consensus 132 ~~y~~ad~~~v~~s 145 (248)
..+..||++++-++
T Consensus 103 ~~~~~aDlvl~iG~ 116 (170)
T 3cf4_G 103 DGNGNYDMIITIGF 116 (170)
T ss_dssp SSSCCCSEEEEESC
T ss_pred HHhhcCCEEEEECC
Confidence 44678998776443
No 206
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=38.47 E-value=1e+02 Score=25.29 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=34.4
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEc-ChhHHHHHHhhCCEEEE
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVD-TLGELRQLYKLTPIAVI 142 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~y~~ad~~~v 142 (248)
..-+.+|+|++.--...+..++...|-. |.+.+ ...++.++.+.||++|.
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAt---------------Vtv~hs~t~~L~~~~~~ADIVI~ 214 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNNAT---------------VTTCHSKTAHLDEEVNKGDILVV 214 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCE---------------EEEECTTCSSHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCe---------------EEEEECCcccHHHHhccCCEEEE
Confidence 4568999999865556666666665532 34443 23589999999999765
No 207
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=38.08 E-value=1.7e+02 Score=24.05 Aligned_cols=93 Identities=10% Similarity=-0.079 Sum_probs=53.1
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHH--hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecc-cCCCCCC-----
Q 043830 47 LAHRQVWMASSIHRGEEKVMLAVHKVLMQ--KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR-HEKLMPR----- 118 (248)
Q Consensus 47 ~~~~~v~l~~~~~~~~~~~ll~a~~~l~~--~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~~----- 118 (248)
+.+-|||=+++.+...-..|++.+-.... ...++++.++|++..-...+...+..+|....+... +..+++.
T Consensus 120 ~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~ 199 (309)
T 4f2g_A 120 NSRVPVINGLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAE 199 (309)
T ss_dssp TCSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGG
T ss_pred hCCCCEEECCCCccCcHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHH
Confidence 34678887765433222345555443222 234789999999744335566667788876544332 2222111
Q ss_pred --ccEEEEcChhHHHHHHhhCCEEEE
Q 043830 119 --TNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 119 --~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
..+.+.. ++.+....||++++
T Consensus 200 ~g~~v~~~~---d~~eav~~aDvvyt 222 (309)
T 4f2g_A 200 SAPFYQVFD---DPNEACKGADLVTT 222 (309)
T ss_dssp GGGGEEECS---SHHHHTTTCSEEEE
T ss_pred cCCeEEEEc---CHHHHhcCCCEEEe
Confidence 1333433 67788999999765
No 208
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=38.03 E-value=38 Score=22.74 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.8
Q ss_pred eEEEcCCHHHHHHHHHHhhhC
Q 043830 188 SVLQVSGKSELEEALSQLFSD 208 (248)
Q Consensus 188 ~~~~~~~~~~l~~~i~~ll~~ 208 (248)
++..+-+.++|.++|.+++..
T Consensus 105 ~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 105 TFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp EEESSCCHHHHHHHHHHHSCC
T ss_pred eeCCCCCHHHHHHHHHHHHhh
Confidence 445567999999999988864
No 209
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=37.81 E-value=1.4e+02 Score=24.17 Aligned_cols=66 Identities=17% Similarity=0.029 Sum_probs=38.9
Q ss_pred CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCC
Q 043830 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 77 ~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~ 154 (248)
.+++.++-+-+. . .+..++.+.+.|+. . .++.++++ ..|++++...-. .....
T Consensus 25 ~~~~~l~av~d~-~-~~~~~~~~~~~~~~------------------~---~~~~~~l~~~~~D~V~i~tp~~--~h~~~ 79 (331)
T 4hkt_A 25 NADARLVAVADA-F-PAAAEAIAGAYGCE------------------V---RTIDAIEAAADIDAVVICTPTD--THADL 79 (331)
T ss_dssp CTTEEEEEEECS-S-HHHHHHHHHHTTCE------------------E---CCHHHHHHCTTCCEEEECSCGG--GHHHH
T ss_pred CCCcEEEEEECC-C-HHHHHHHHHHhCCC------------------c---CCHHHHhcCCCCCEEEEeCCch--hHHHH
Confidence 477877644331 2 14455666666553 1 14556676 689987743211 11123
Q ss_pred HHHHHhhCCcEEE
Q 043830 155 ISEAAAAGCAVLT 167 (248)
Q Consensus 155 ~lEA~a~G~Pvi~ 167 (248)
+.+++..|++|++
T Consensus 80 ~~~al~~gk~v~~ 92 (331)
T 4hkt_A 80 IERFARAGKAIFC 92 (331)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHHcCCcEEE
Confidence 6889999999998
No 210
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=37.03 E-value=1.2e+02 Score=24.61 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=34.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEE
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVI 142 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v 142 (248)
..-+.+|+|++.--...+..++...|-. |.+.+. ..++.++.+.||++|.
T Consensus 158 ~gk~vvVIG~s~iVG~p~A~lL~~~gAt---------------Vtv~hs~t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 158 FGLNAVVIGASNIVGRPMSMELLLAGCT---------------TTVTHRFTKNLRHHVENADLLIV 208 (288)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTTCE---------------EEEECSSCSCHHHHHHHCSEEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCCCe---------------EEEEeCCchhHHHHhccCCEEEE
Confidence 4568999999865556677776665532 333332 2489999999999765
No 211
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=36.17 E-value=83 Score=26.49 Aligned_cols=69 Identities=10% Similarity=-0.033 Sum_probs=39.5
Q ss_pred CCeEEEE-ecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh-------CCEEEEcCccCCC
Q 043830 78 PNLVTII-VPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL-------TPIAVIGGSFLPG 149 (248)
Q Consensus 78 ~~~~lvi-vG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~-------ad~~~v~~s~~e~ 149 (248)
+++.++- +-+ .. .+..++.++++|++.. ++ +.++.++++. .|++++.....
T Consensus 38 ~~~~lva~v~d-~~-~~~a~~~a~~~g~~~~------------~~-----~~~~~~ll~~~~~~~~~vD~V~i~tp~~-- 96 (398)
T 3dty_A 38 NTFVLVAGAFD-ID-PIRGSAFGEQLGVDSE------------RC-----YADYLSMFEQEARRADGIQAVSIATPNG-- 96 (398)
T ss_dssp GSEEEEEEECC-SS-HHHHHHHHHHTTCCGG------------GB-----CSSHHHHHHHHTTCTTCCSEEEEESCGG--
T ss_pred CCeEEEEEEeC-CC-HHHHHHHHHHhCCCcc------------ee-----eCCHHHHHhcccccCCCCCEEEECCCcH--
Confidence 5666653 333 22 2456666777777410 00 1245666665 89987743221
Q ss_pred CCCCCHHHHHhhCCcEEE
Q 043830 150 LAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 150 ~gg~~~lEA~a~G~Pvi~ 167 (248)
.-...+.+|+..|++|++
T Consensus 97 ~H~~~~~~al~aGkhVl~ 114 (398)
T 3dty_A 97 THYSITKAALEAGLHVVC 114 (398)
T ss_dssp GHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHCCCeEEE
Confidence 111236899999999998
No 212
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=36.10 E-value=1.2e+02 Score=24.98 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=17.6
Q ss_pred hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 136 LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
.-|+++..+++. .....+-|..+|+|+++
T Consensus 92 ~PDvVi~~g~~~---s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 92 RPVCVLGLGGYV---TGPGGLAARLNGVPLVI 120 (365)
T ss_dssp CCSEEEECSSST---HHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEcCCcc---hHHHHHHHHHcCCCEEE
Confidence 368865533221 11234678889999997
No 213
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=35.89 E-value=1.4e+02 Score=24.14 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=34.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEEc
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v~ 143 (248)
.+-+.+|+|++.--...+..++...|-. |.+.+. ..++.++.+.||++|..
T Consensus 159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAt---------------Vtv~h~~t~~L~~~~~~ADIVI~A 210 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRPMATMLLNAGAT---------------VSVCHIKTKDLSLYTRQADLIIVA 210 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCE---------------EEEECTTCSCHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCe---------------EEEEeCCchhHHHHhhcCCEEEEC
Confidence 3467999998765556777777766553 233332 24789999999997653
No 214
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=35.64 E-value=39 Score=27.59 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.1
Q ss_pred EEEcCCHHHHHHHHHHhh
Q 043830 189 VLQVSGKSELEEALSQLF 206 (248)
Q Consensus 189 ~~~~~~~~~l~~~i~~ll 206 (248)
++.+++.++|.+.+..+|
T Consensus 278 v~~v~~~~el~~~~~~~~ 295 (297)
T 2yv2_A 278 VEVAETPFEVPELVRKAL 295 (297)
T ss_dssp CEEESSGGGHHHHHHHHC
T ss_pred CeEeCCHHHHHHHHHHHh
Confidence 466788889888887766
No 215
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=35.55 E-value=42 Score=29.29 Aligned_cols=83 Identities=6% Similarity=0.042 Sum_probs=45.5
Q ss_pred EEEcChh-HHHHHHhhCCEEEEcCccCCCCCCCC-HHHHHh---------hCCcEEECC--C-CCChHHHHHHHHh----
Q 043830 122 YVVDTLG-ELRQLYKLTPIAVIGGSFLPGLAGHN-ISEAAA---------AGCAVLTGP--H-IGHYSNMVSAMQR---- 183 (248)
Q Consensus 122 ~~~~~~~-~l~~~y~~ad~~~v~~s~~e~~gg~~-~lEA~a---------~G~Pvi~~~--~-~~~~~~~~~~~~~---- 183 (248)
++++++. ....+...||.+++.|. |+|.+. ++|++. .++|||.-. + .+-+....+.+..
T Consensus 230 Iiv~~m~eRK~~mv~~SDAfIaLPG---G~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~ 306 (460)
T 3bq9_A 230 VILPDIEKRLEAFVRCAHGIVIFPG---GAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGD 306 (460)
T ss_dssp EECSSHHHHHHHHHHHCSEEEECSC---SHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCT
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCC---CcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcc
Confidence 3445553 34566788999776542 221121 678888 389999742 1 1112222222211
Q ss_pred -cCCceEEEcCCHHHHHHHHHHhhh
Q 043830 184 -LNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 184 -~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.-......++|++++.+.+...+.
T Consensus 307 ~~~~~~iiv~ddpeEal~~l~~~~~ 331 (460)
T 3bq9_A 307 EARQLYKIIIDDPAAVAQHMHAGMA 331 (460)
T ss_dssp TGGGGCEEEESCHHHHHHHHHHHHH
T ss_pred hhhcCcEEEeCCHHHHHHHHHHHHH
Confidence 001134567999999998876654
No 216
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=35.29 E-value=1.6e+02 Score=23.09 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=17.6
Q ss_pred hCCEEEEcCccCCCCCCC-CHHHHHhhCCcEEECCC
Q 043830 136 LTPIAVIGGSFLPGLAGH-NISEAAAAGCAVLTGPH 170 (248)
Q Consensus 136 ~ad~~~v~~s~~e~~gg~-~~lEA~a~G~Pvi~~~~ 170 (248)
.+|+++-+++- +. .. ++..++..|+|+|++..
T Consensus 45 ~~DvvIDfT~p-~a--~~~~~~~a~~~g~~~VigTT 77 (245)
T 1p9l_A 45 NTEVVIDFTHP-DV--VMGNLEFLIDNGIHAVVGTT 77 (245)
T ss_dssp TCCEEEECSCT-TT--HHHHHHHHHHTTCEEEECCC
T ss_pred CCcEEEEccCh-HH--HHHHHHHHHHcCCCEEEcCC
Confidence 67875434321 11 12 23455778999888643
No 217
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=34.93 E-value=22 Score=26.13 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHhhCCEEEEcCccCCCCCCCCHHH---HHhhCCcEEE-CC--CCCChHHHHHHHHhcCCceE-EEcCCHHHHHHHHH
Q 043830 131 RQLYKLTPIAVIGGSFLPGLAGHNISE---AAAAGCAVLT-GP--HIGHYSNMVSAMQRLNPKSV-LQVSGKSELEEALS 203 (248)
Q Consensus 131 ~~~y~~ad~~~v~~s~~e~~gg~~~lE---A~a~G~Pvi~-~~--~~~~~~~~~~~~~~~g~g~~-~~~~~~~~l~~~i~ 203 (248)
..++..||+++.-.+. +.. | +..| |.+.|+||++ .. .....+-.+.- ...+.-+- ....+ ++|.+.|.
T Consensus 63 ~~~i~~aD~vvA~l~~-~d~-G-t~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G-~~~~~~~~~~~Y~~-~el~~il~ 137 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQ-PSL-G-VGYELGRAVALGKPILCLFRPQSGRVLSAMIRG-AADGSRFQVWDYAE-GEVETMLD 137 (152)
T ss_dssp HHHHHHCSEEEEECSS-CCH-H-HHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHH-HCCSSSEEEEECCT-TCHHHHHH
T ss_pred HHHHHHCCEEEEeCCC-CCC-C-HHHHHHHHHHcCCeEEEEEeCCccchhHHHHcC-CCCCCeEEEEEecH-HHHHHHHH
Confidence 4679999997764331 221 2 2344 7899999998 22 12233323322 22211122 22355 78888887
Q ss_pred Hhhh
Q 043830 204 QLFS 207 (248)
Q Consensus 204 ~ll~ 207 (248)
++++
T Consensus 138 ~f~~ 141 (152)
T 4fyk_A 138 RYFE 141 (152)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7775
No 218
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=34.90 E-value=1.6e+02 Score=23.82 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=33.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEE
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVI 142 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v 142 (248)
+-+.+|+|++.--...+..++...|-. |.+... ..++.++.+.||++|.
T Consensus 161 Gk~vvVIG~s~iVG~p~A~lL~~~gAt---------------Vtv~hs~t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 161 GAYAVVVGASNVVGKPVSQLLLNAKAT---------------VTTCHRFTTDLKSHTTKADILIV 210 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCE---------------EEEECTTCSSHHHHHTTCSEEEE
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCe---------------EEEEeCCchhHHHhcccCCEEEE
Confidence 457899998765556777777766653 233331 2478999999999765
No 219
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=34.89 E-value=45 Score=25.19 Aligned_cols=68 Identities=9% Similarity=-0.064 Sum_probs=35.6
Q ss_pred CCEEEEcCccCCCCCCCCHHHHHh----hCCcEEE-CCCCCChHHHHHHHHhcCC-ceEEEcCCHHHHHHHHHHhhh
Q 043830 137 TPIAVIGGSFLPGLAGHNISEAAA----AGCAVLT-GPHIGHYSNMVSAMQRLNP-KSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 137 ad~~~v~~s~~e~~gg~~~lEA~a----~G~Pvi~-~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~l~~~i~~ll~ 207 (248)
.|++++--.. ++..|..+++.+. ..+|||+ +... +..... .....|. |++..+.++++|..+|..++.
T Consensus 55 ~dlvllD~~m-p~~~G~~~~~~lr~~~~~~~~ii~lt~~~-~~~~~~-~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 55 IQMLVIDYSR-ISDDVLTDYSSFKHISCPDAKEVIINCPQ-DIEHKL-LFKWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp CCEEEEEGGG-CCHHHHHHHHHHHHHHCTTCEEEEEEECT-TCCHHH-HTTSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHHhhCCCCcEEEEECCc-chhHHH-HHHHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 5776663222 2222444554443 3678886 2221 111222 2222222 355556799999999998886
No 220
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=34.52 E-value=90 Score=19.90 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=32.1
Q ss_pred HHHHHh-hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHH
Q 043830 155 ISEAAA-AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAA 219 (248)
Q Consensus 155 ~lEA~a-~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 219 (248)
+++... .|-||+++.++. ....++...+.+.|.+. ..|+.+|...+.+.+.-
T Consensus 19 ~~~~v~~~~epviItr~g~------------~~avlvs~e~y~~l~e~-l~ll~~p~~~~~L~~~~ 71 (86)
T 2a6q_A 19 TMMKAVEDHAPILITRQNG------------EACVLMSLEEYNSLEET-AYLLRSPANARRLMDSI 71 (86)
T ss_dssp HHHHHHHHTCCEEEECTTS------------CEEEEEEHHHHHHHHHH-HHHHHSHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeCCC------------ccEEEEcHHHHHHHHHH-HHHhcCHHHHHHHHHHH
Confidence 455444 589999976531 11134555777787766 45777887776655543
No 221
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=33.96 E-value=2e+02 Score=23.72 Aligned_cols=67 Identities=9% Similarity=-0.066 Sum_probs=38.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~ 155 (248)
+++.++-+-+. . .+..++.+++++... .. .++.++++. .|++++..... .-...+
T Consensus 49 ~~~~lvav~d~-~-~~~a~~~a~~~~~~~----------------~~---~~~~~ll~~~~vD~V~I~tp~~--~H~~~~ 105 (361)
T 3u3x_A 49 AGARLAGFHEK-D-DALAAEFSAVYADAR----------------RI---ATAEEILEDENIGLIVSAAVSS--ERAELA 105 (361)
T ss_dssp TTCEEEEEECS-C-HHHHHHHHHHSSSCC----------------EE---SCHHHHHTCTTCCEEEECCCHH--HHHHHH
T ss_pred CCcEEEEEEcC-C-HHHHHHHHHHcCCCc----------------cc---CCHHHHhcCCCCCEEEEeCChH--HHHHHH
Confidence 67777655542 2 245566666665321 11 245666765 78887743211 001236
Q ss_pred HHHHhhCCcEEE
Q 043830 156 SEAAAAGCAVLT 167 (248)
Q Consensus 156 lEA~a~G~Pvi~ 167 (248)
.+|+..|++|++
T Consensus 106 ~~al~aGkhVl~ 117 (361)
T 3u3x_A 106 IRAMQHGKDVLV 117 (361)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCeEEE
Confidence 899999999998
No 222
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=33.76 E-value=62 Score=26.21 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=11.7
Q ss_pred EEEcCCHHHHHHHHHHhh
Q 043830 189 VLQVSGKSELEEALSQLF 206 (248)
Q Consensus 189 ~~~~~~~~~l~~~i~~ll 206 (248)
++.+++.++|.+.+..++
T Consensus 270 v~~~~~~~el~~~~~~~~ 287 (288)
T 1oi7_A 270 IPVADTIDEIVELVKKAL 287 (288)
T ss_dssp CCBCSSHHHHHHHHHHHH
T ss_pred CeEeCCHHHHHHHHHHHh
Confidence 355677777777766554
No 223
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=33.68 E-value=89 Score=25.44 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=24.5
Q ss_pred HHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 129 ELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++.++++ ..|++++..... .....+.+|+..|++|++
T Consensus 58 ~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~aGk~Vl~ 96 (329)
T 3evn_A 58 KLEDMLADESIDVIYVATINQ--DHYKVAKAALLAGKHVLV 96 (329)
T ss_dssp CHHHHHTCTTCCEEEECSCGG--GHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHHCCCeEEE
Confidence 4566677 689987743211 101236899999999998
No 224
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=33.06 E-value=72 Score=25.77 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=17.8
Q ss_pred HHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 180 AMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 180 ~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
.+.+.| ++.+++.++|.+.+.+.+
T Consensus 264 a~~~aG---v~~~~~~~el~~~~~~~~ 287 (288)
T 2nu8_A 264 ALEAAG---VKTVRSLADIGEALKTVL 287 (288)
T ss_dssp HHHHTT---CEECSSGGGHHHHHHHHC
T ss_pred HHHHCC---CeEeCCHHHHHHHHHHHh
Confidence 355555 567899999999887765
No 225
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=32.94 E-value=2.2e+02 Score=23.84 Aligned_cols=119 Identities=10% Similarity=0.134 Sum_probs=63.2
Q ss_pred eEEEE--eCCCcchHHHHHHHHHHHHHhCCCe-EEEE-------ec----------------------CCCCCHHHHHHH
Q 043830 51 QVWMA--SSIHRGEEKVMLAVHKVLMQKNPNL-VTII-------VP----------------------RHPQHGKEIAQK 98 (248)
Q Consensus 51 ~v~l~--~~~~~~~~~~ll~a~~~l~~~~~~~-~lvi-------vG----------------------~~~~~~~~l~~~ 98 (248)
+++++ ++.|.+.++...+.+...+...-++ ++-. -+ -+.+....|.+.
T Consensus 20 ~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~ 99 (349)
T 2wqp_A 20 PLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEY 99 (349)
T ss_dssp CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHH
Confidence 45554 4567777766666666665555552 3321 01 111223567777
Q ss_pred HHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh-CCEEEEcCccCCCCCCCCHHHHHh-hCCcEEECCCCCChHH
Q 043830 99 LQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL-TPIAVIGGSFLPGLAGHNISEAAA-AGCAVLTGPHIGHYSN 176 (248)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~-ad~~~v~~s~~e~~gg~~~lEA~a-~G~Pvi~~~~~~~~~~ 176 (248)
+++.|+.... + ..| ...+..+-.. .|++=++ |. + +.-..++++++ .|+|||.+.......|
T Consensus 100 ~~~~Gi~~~s--t-----------~~d-~~svd~l~~~~v~~~KI~-S~-~-~~n~~LL~~va~~gkPviLstGmat~~E 162 (349)
T 2wqp_A 100 VESKGMIFIS--T-----------LFS-RAAALRLQRMDIPAYKIG-SG-E-CNNYPLIKLVASFGKPIILSTGMNSIES 162 (349)
T ss_dssp HHHTTCEEEE--E-----------ECS-HHHHHHHHHHTCSCEEEC-GG-G-TTCHHHHHHHHTTCSCEEEECTTCCHHH
T ss_pred HHHhCCeEEE--e-----------eCC-HHHHHHHHhcCCCEEEEC-cc-c-ccCHHHHHHHHhcCCeEEEECCCCCHHH
Confidence 8888886311 1 001 1244444444 6875554 43 2 21234576554 7999999776656665
Q ss_pred ---HHHHHHhcCC
Q 043830 177 ---MVSAMQRLNP 186 (248)
Q Consensus 177 ---~~~~~~~~g~ 186 (248)
+++.+...|+
T Consensus 163 i~~Ave~i~~~G~ 175 (349)
T 2wqp_A 163 IKKSVEIIREAGV 175 (349)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 3455555543
No 226
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=32.83 E-value=21 Score=24.61 Aligned_cols=23 Identities=13% Similarity=-0.117 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
++.+++|...|+++++|.+.|-+
T Consensus 64 ~aV~~~L~~~Gi~~~ri~~~g~G 86 (118)
T 2hqs_H 64 NAVKMYLQGKGVSADQISIVSYG 86 (118)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHcCCCHHHEEEEEec
Confidence 46788898999999999998743
No 227
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=32.60 E-value=2e+02 Score=23.42 Aligned_cols=93 Identities=11% Similarity=-0.057 Sum_probs=51.8
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHH--hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecc-cCCCCCCc----
Q 043830 47 LAHRQVWMASSIHRGEEKVMLAVHKVLMQ--KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR-HEKLMPRT---- 119 (248)
Q Consensus 47 ~~~~~v~l~~~~~~~~~~~ll~a~~~l~~--~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~~~---- 119 (248)
+.+-|||=+++.+..--..|++.+-.... ...++++.++|++..-...+...+..+|....+... +..+++..
T Consensus 120 ~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~ 199 (301)
T 2ef0_A 120 HAKVPVVNALSDRAHPLQALADLLTLKEVFGGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRA 199 (301)
T ss_dssp HCSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHH
T ss_pred HCCCCEEeCCCCccCchHHHHHHHHHHHHhCCcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhc
Confidence 44678887665332222345555543222 234689999999733334566666788886544432 22221100
Q ss_pred cEEEEcChhHHHHHHhhCCEEEE
Q 043830 120 NVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 120 ~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
.+.+.. ++.+...-||++++
T Consensus 200 ~~~~~~---d~~eav~~aDvvy~ 219 (301)
T 2ef0_A 200 NAFFTH---DPKEAALGAHALYT 219 (301)
T ss_dssp TCEEES---CHHHHHTTCSEEEE
T ss_pred eeEEEC---CHHHHhcCCCEEEe
Confidence 033333 56788999999765
No 228
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=32.60 E-value=1.7e+02 Score=23.72 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=33.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEE
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVI 142 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v 142 (248)
.-+.+|+|++.--...+..++...|-. |.+... ..++.++.+.||++|.
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~gAt---------------Vtv~hs~T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLGGCT---------------VTVTHRFTRDLADHVSRADLVVV 210 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHTTCE---------------EEEECTTCSCHHHHHHTCSEEEE
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCe---------------EEEEeCCCcCHHHHhccCCEEEE
Confidence 457999998765556777777766553 233322 2478999999999765
No 229
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=31.76 E-value=1.7e+02 Score=23.95 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=38.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~ 155 (248)
+++.++-+-+. . .+..++.+.+.|+. .. .++.++++ ..|++++..... .....+
T Consensus 37 ~~~~lvav~d~-~-~~~~~~~~~~~~~~-----------------~~---~~~~~ll~~~~~D~V~i~tp~~--~h~~~~ 92 (354)
T 3q2i_A 37 DRAELIDVCDI-D-PAALKAAVERTGAR-----------------GH---ASLTDMLAQTDADIVILTTPSG--LHPTQS 92 (354)
T ss_dssp TTEEEEEEECS-S-HHHHHHHHHHHCCE-----------------EE---SCHHHHHHHCCCSEEEECSCGG--GHHHHH
T ss_pred CCeEEEEEEcC-C-HHHHHHHHHHcCCc-----------------ee---CCHHHHhcCCCCCEEEECCCcH--HHHHHH
Confidence 67776644331 2 14455666666652 11 24555666 689987743211 101236
Q ss_pred HHHHhhCCcEEEC
Q 043830 156 SEAAAAGCAVLTG 168 (248)
Q Consensus 156 lEA~a~G~Pvi~~ 168 (248)
.+|+..|++|++-
T Consensus 93 ~~al~~gk~v~~E 105 (354)
T 3q2i_A 93 IECSEAGFHVMTE 105 (354)
T ss_dssp HHHHHTTCEEEEC
T ss_pred HHHHHCCCCEEEe
Confidence 8899999999983
No 230
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=31.47 E-value=54 Score=18.60 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCeEEEEecCCC
Q 043830 67 LAVHKVLMQKNPNLVTIIVPRHP 89 (248)
Q Consensus 67 l~a~~~l~~~~~~~~lvivG~~~ 89 (248)
-+|...+.+.+|++..++++.|.
T Consensus 19 ~~A~~~I~~e~P~v~v~vl~~gs 41 (45)
T 1hym_A 19 SVAKAIIERQNPNVKAVILEEGT 41 (45)
T ss_dssp HHHHHHHHHHCTTCEEEEEECCS
T ss_pred HHHHHHHHHHCCCCeEEEecCCC
Confidence 45666678889999888877653
No 231
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=31.21 E-value=1.8e+02 Score=23.67 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=38.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNI 155 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~ 155 (248)
+++.++-+-+. . .+..++.+++++... .. .++.++++ ..|++++...-. .-...+
T Consensus 43 ~~~~lvav~d~-~-~~~~~~~a~~~~~~~----------------~~---~~~~~ll~~~~vD~V~i~tp~~--~H~~~~ 99 (340)
T 1zh8_A 43 HLFEITAVTSR-T-RSHAEEFAKMVGNPA----------------VF---DSYEELLESGLVDAVDLTLPVE--LNLPFI 99 (340)
T ss_dssp TTEEEEEEECS-S-HHHHHHHHHHHSSCE----------------EE---SCHHHHHHSSCCSEEEECCCGG--GHHHHH
T ss_pred CceEEEEEEcC-C-HHHHHHHHHHhCCCc----------------cc---CCHHHHhcCCCCCEEEEeCCch--HHHHHH
Confidence 67777555442 2 144556666666521 11 24556665 479988743211 101236
Q ss_pred HHHHhhCCcEEE
Q 043830 156 SEAAAAGCAVLT 167 (248)
Q Consensus 156 lEA~a~G~Pvi~ 167 (248)
.+|+..|++|++
T Consensus 100 ~~al~aGkhVl~ 111 (340)
T 1zh8_A 100 EKALRKGVHVIC 111 (340)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCcEEE
Confidence 889999999998
No 232
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=31.09 E-value=1.8e+02 Score=23.59 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=33.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEEc
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v~ 143 (248)
..-+.+|+|++.--...+..++...+. +..|.+.+. ..++.+..+.||++|..
T Consensus 157 ~gk~vvVvG~s~iVG~p~A~lL~~~g~-------------~atVtv~h~~t~~L~~~~~~ADIVI~A 210 (281)
T 2c2x_A 157 AGAHVVVIGRGVTVGRPLGLLLTRRSE-------------NATVTLCHTGTRDLPALTRQADIVVAA 210 (281)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHTSTTT-------------CCEEEEECTTCSCHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCcHHHHHHHHHHhcCCC-------------CCEEEEEECchhHHHHHHhhCCEEEEC
Confidence 345889999986544556666555410 013444442 35899999999997663
No 233
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=30.75 E-value=1.5e+02 Score=24.37 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=39.1
Q ss_pred CCCeEEEEe-cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCC
Q 043830 77 NPNLVTIIV-PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 77 ~~~~~lviv-G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~ 153 (248)
.|++.++-+ ...+ +..++.+++.|++. + . ++.++++ ..|++++..... .-..
T Consensus 50 ~~~~~l~av~d~~~---~~~~~~a~~~g~~~---------------~--~---~~~~ll~~~~~D~V~i~tp~~--~h~~ 104 (350)
T 3rc1_A 50 EPLTEVTAIASRRW---DRAKRFTERFGGEP---------------V--E---GYPALLERDDVDAVYVPLPAV--LHAE 104 (350)
T ss_dssp CTTEEEEEEEESSH---HHHHHHHHHHCSEE---------------E--E---SHHHHHTCTTCSEEEECCCGG--GHHH
T ss_pred CCCeEEEEEEcCCH---HHHHHHHHHcCCCC---------------c--C---CHHHHhcCCCCCEEEECCCcH--HHHH
Confidence 467777644 3322 44566666666642 1 1 4556665 479987743211 1012
Q ss_pred CHHHHHhhCCcEEE
Q 043830 154 NISEAAAAGCAVLT 167 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~ 167 (248)
.+.+|+..|++|++
T Consensus 105 ~~~~al~aGk~Vl~ 118 (350)
T 3rc1_A 105 WIDRALRAGKHVLA 118 (350)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCcEEE
Confidence 36889999999998
No 234
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=30.66 E-value=2.1e+02 Score=22.99 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=23.8
Q ss_pred HHHHHH-hhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEEC
Q 043830 129 ELRQLY-KLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTG 168 (248)
Q Consensus 129 ~l~~~y-~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~ 168 (248)
++.+++ ...|++++...-. .....+.+|+..|++|++-
T Consensus 54 ~~~~~l~~~~D~V~i~tp~~--~h~~~~~~al~~gk~V~~E 92 (325)
T 2ho3_A 54 QLEVFFKSSFDLVYIASPNS--LHFAQAKAALSAGKHVILE 92 (325)
T ss_dssp CHHHHHTSSCSEEEECSCGG--GHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHhCCCCCEEEEeCChH--HHHHHHHHHHHcCCcEEEe
Confidence 345556 5789988743211 1012357889999999983
No 235
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=30.62 E-value=44 Score=22.61 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhhhcC
Q 043830 197 ELEEALSQLFSDARVLEAQQMAAKQAFCALSSGIVANVWNLLNFHVFRRALC 248 (248)
Q Consensus 197 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 248 (248)
...+.+.++++||+.++-+.+.-. +....++++.+.-+.+++..+-.|
T Consensus 20 ~~~~~~~~vl~dP~V~~Fl~~h~~----~l~~~~I~~s~~kL~ey~~e~~~c 67 (106)
T 2k7r_A 20 RLEQMKEKVMKDQDVQAFLKENEE----VIDQKMIEKSLNKLYEYIEQSKNC 67 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSTT----TCCHHHHHHTHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHcCHHHHHHHHHChh----hCCHHHHHhhHHHHHHHHHHHHhh
Confidence 344568888999998655443211 114688888888888888888765
No 236
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=30.09 E-value=1.1e+02 Score=22.47 Aligned_cols=34 Identities=21% Similarity=-0.007 Sum_probs=20.8
Q ss_pred HHHhhCCEEEEcC-ccCCCCCCCCHHH---HHhhCCcEEE
Q 043830 132 QLYKLTPIAVIGG-SFLPGLAGHNISE---AAAAGCAVLT 167 (248)
Q Consensus 132 ~~y~~ad~~~v~~-s~~e~~gg~~~lE---A~a~G~Pvi~ 167 (248)
..+..||+++..- ...+. .-+..| |.+.|+||++
T Consensus 65 ~~i~~aD~viA~ldg~~~D--~Gt~~EiG~A~a~gkPVi~ 102 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTID--AGVASEIGVAYAKGIPVVA 102 (162)
T ss_dssp HHHHTCSEEEEECCSSSCC--HHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHCCEEEEECCCCCCC--CCHHHHHHHHHHCCCEEEE
Confidence 5688999965521 11111 113455 6899999997
No 237
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=29.76 E-value=2.2e+02 Score=22.94 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=35.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcC-hhHHHHHHhhCCEEEEc
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDT-LGELRQLYKLTPIAVIG 143 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~y~~ad~~~v~ 143 (248)
..-+.+|+|++.--...+..++...|-. |.+.+. ..++.+..+.||++|..
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~gAt---------------Vtv~~~~t~~L~~~~~~ADIVI~A 200 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRNYT---------------VSVCHSKTKDIGSMTRSSKIVVVA 200 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTTCE---------------EEEECTTCSCHHHHHHHSSEEEEC
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCCCe---------------EEEEeCCcccHHHhhccCCEEEEC
Confidence 4568999998765556677777666553 333332 34789999999997653
No 238
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=28.57 E-value=2.3e+02 Score=23.74 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh-CCEEEEcCccCCCCCCCCHHHHH-hhCCcEEECCC
Q 043830 93 KEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL-TPIAVIGGSFLPGLAGHNISEAA-AAGCAVLTGPH 170 (248)
Q Consensus 93 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~-ad~~~v~~s~~e~~gg~~~lEA~-a~G~Pvi~~~~ 170 (248)
..|.+.+++.|+.... + ..| ...+..+-.. .|++=++ |. + +.-..+++.+ ..|+|||.+..
T Consensus 81 ~~L~~~~~~~Gi~~~s--t-----------~fD-~~svd~l~~~~v~~~KI~-S~-~-~~N~pLL~~va~~gKPviLstG 143 (350)
T 3g8r_A 81 QKLVAEMKANGFKAIC--T-----------PFD-EESVDLIEAHGIEIIKIA-SC-S-FTDWPLLERIARSDKPVVASTA 143 (350)
T ss_dssp HHHHHHHHHTTCEEEE--E-----------ECS-HHHHHHHHHTTCCEEEEC-SS-S-TTCHHHHHHHHTSCSCEEEECT
T ss_pred HHHHHHHHHcCCcEEe--c-----------cCC-HHHHHHHHHcCCCEEEEC-cc-c-ccCHHHHHHHHhhCCcEEEECC
Confidence 4566778888886311 1 001 1244444555 7885554 43 2 2122356554 58999999876
Q ss_pred CCChHHH---HHHHHhcCC
Q 043830 171 IGHYSNM---VSAMQRLNP 186 (248)
Q Consensus 171 ~~~~~~~---~~~~~~~g~ 186 (248)
.....|+ ++.+...|.
T Consensus 144 mstl~Ei~~Ave~i~~~g~ 162 (350)
T 3g8r_A 144 GARREDIDKVVSFMLHRGK 162 (350)
T ss_dssp TCCHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 6666654 344444443
No 239
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=28.34 E-value=21 Score=27.81 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=42.8
Q ss_pred EcChh-HHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHh-------hCCcEEECCCCCChHHHH---HHHHhcCC-----
Q 043830 124 VDTLG-ELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAA-------AGCAVLTGPHIGHYSNMV---SAMQRLNP----- 186 (248)
Q Consensus 124 ~~~~~-~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a-------~G~Pvi~~~~~~~~~~~~---~~~~~~g~----- 186 (248)
.+++. .-.-+...||.+++.|. |+|.+ -+.|++. .++||+.-+. +-+.... +.+.+.|.
T Consensus 118 ~~~f~~Rk~~m~~~sda~IvlpG---G~GTL~El~e~lt~~qlg~~~~kPvvll~~-~~w~~l~~~l~~~~~~Gfi~~~~ 193 (217)
T 1wek_A 118 LRYFFVRKVLFVRYAVGFVFLPG---GFGTLDELSEVLVLLQTEKVHRFPVFLLDR-GYWEGLVRWLAFLRDQKAVGPED 193 (217)
T ss_dssp ESCHHHHHHHHHHTEEEEEECSC---CHHHHHHHHHHHHHHHTTSSCCCCEEEECH-HHHHHHHHHHHHHHHTTSSCTTG
T ss_pred cCCHHHHHHHHHHhCCEEEEeCC---CCcHHHHHHHHHHHHhhCCCCCCCEEEeCc-ccchhHHHHHHHHHHCCCCCHHH
Confidence 34442 33456778998777542 22222 2688888 3799997432 1122222 33444331
Q ss_pred -ceEEEcCCHHHHHHHHHHh
Q 043830 187 -KSVLQVSGKSELEEALSQL 205 (248)
Q Consensus 187 -g~~~~~~~~~~l~~~i~~l 205 (248)
..+..++|++++.+.+.+.
T Consensus 194 ~~~~~~~~~~~e~~~~l~~~ 213 (217)
T 1wek_A 194 LQLFRLTDEPEEVVQALKAE 213 (217)
T ss_dssp GGGSEEESCHHHHHHHHHC-
T ss_pred cCeEEEeCCHHHHHHHHHHh
Confidence 1235668999998877543
No 240
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=28.27 E-value=28 Score=24.68 Aligned_cols=23 Identities=0% Similarity=-0.372 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
++.+++|...|+++++|.+.|.+
T Consensus 88 ~aV~~~L~~~Gi~~~ri~~~g~G 110 (134)
T 2aiz_P 88 DAVKGYLAGKGVDAGKLGTVSYG 110 (134)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHcCCCHHHEEEEEEC
Confidence 46788999999999999998854
No 241
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=28.04 E-value=1.4e+02 Score=23.89 Aligned_cols=68 Identities=10% Similarity=-0.038 Sum_probs=40.3
Q ss_pred hCCCeEEEEe-cCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 76 KNPNLVTIIV-PRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 76 ~~~~~~lviv-G~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
+.+++.++-+ ...+ +..++.+.+.|... . .++.+++...|++++...... -...
T Consensus 28 ~~~~~~l~av~d~~~---~~~~~~a~~~~~~~-----------------~---~~~~~ll~~~D~V~i~tp~~~--h~~~ 82 (308)
T 3uuw_A 28 KSERFEFVGAFTPNK---VKREKICSDYRIMP-----------------F---DSIESLAKKCDCIFLHSSTET--HYEI 82 (308)
T ss_dssp SCSSSEEEEEECSCH---HHHHHHHHHHTCCB-----------------C---SCHHHHHTTCSEEEECCCGGG--HHHH
T ss_pred hCCCeEEEEEECCCH---HHHHHHHHHcCCCC-----------------c---CCHHHHHhcCCEEEEeCCcHh--HHHH
Confidence 3477777644 4332 44556666666541 1 244555668999887432111 0123
Q ss_pred HHHHHhhCCcEEEC
Q 043830 155 ISEAAAAGCAVLTG 168 (248)
Q Consensus 155 ~lEA~a~G~Pvi~~ 168 (248)
+.+++..|++|++-
T Consensus 83 ~~~al~~gk~vl~E 96 (308)
T 3uuw_A 83 IKILLNLGVHVYVD 96 (308)
T ss_dssp HHHHHHTTCEEEEC
T ss_pred HHHHHHCCCcEEEc
Confidence 68899999999983
No 242
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=27.18 E-value=2.6e+02 Score=22.88 Aligned_cols=92 Identities=10% Similarity=0.004 Sum_probs=49.6
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHHhC---C-CeEEEEecCCCCCHHHHHHHHHhcCCceEEecc-cCCCCCC---
Q 043830 47 LAHRQVWMASSIHRGEEKVMLAVHKVLMQKN---P-NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSR-HEKLMPR--- 118 (248)
Q Consensus 47 ~~~~~v~l~~~~~~~~~~~ll~a~~~l~~~~---~-~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~~--- 118 (248)
+.+-|||=+++.+...-..|++.+-. .++. . ++++.++|++..-...+...+..+|....+... +..+++.
T Consensus 111 ~~~vPVINag~~~~HPtQaLaDl~Ti-~e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~ 189 (307)
T 3tpf_A 111 YSKAPVINALSELYHPTQVLGDLFTI-KEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWE 189 (307)
T ss_dssp HCSSCEEEEECSSCCHHHHHHHHHHH-HHTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHH
T ss_pred hCCCCEEeCCCCCcCcHHHHHHHHHH-HHHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHH
Confidence 34567776665322222345555542 2322 3 678999998644334555666778876444332 2222110
Q ss_pred ----------ccEEEEcChhHHHHHHhhCCEEEE
Q 043830 119 ----------TNVYVVDTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 119 ----------~~v~~~~~~~~l~~~y~~ad~~~v 142 (248)
..+.++. ++.+...-||++++
T Consensus 190 ~~~~~a~~~g~~~~~~~---d~~eav~~aDvvyt 220 (307)
T 3tpf_A 190 FAMKQALISGAKISLGY---DKFEALKDKDVVIT 220 (307)
T ss_dssp HHHHHHHHHTCEEEEES---CHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCeEEEEc---CHHHHhcCCCEEEe
Confidence 1233333 56777889998665
No 243
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=26.87 E-value=2.4e+02 Score=23.52 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEec----C---------CCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcCh
Q 043830 61 GEEKVMLAVHKVLMQKNPNLVTIIVP----R---------HPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTL 127 (248)
Q Consensus 61 ~~~~~ll~a~~~l~~~~~~~~lvivG----~---------~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 127 (248)
+..+.+++.+..+++...+ ++-.+ + +.+....+++.+++.|++..... .| .
T Consensus 117 es~e~a~~~a~~~k~aGa~--~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~te~-------------~d-~ 180 (350)
T 1vr6_A 117 EGREMLMETAHFLSELGVK--VLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEA-------------LG-E 180 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCC--EEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC-------------SS-G
T ss_pred CCHHHHHHHHHHHHHcCCC--eeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEEEe-------------CC-H
Confidence 4456777777777665444 33332 1 11223567777888998742211 01 1
Q ss_pred hHHHHHHhhCCEEEEcCccCCCCCCCCHH-HHHhhCCcEEECCCCC-ChHH---HHHHHHhcCC
Q 043830 128 GELRQLYKLTPIAVIGGSFLPGLAGHNIS-EAAAAGCAVLTGPHIG-HYSN---MVSAMQRLNP 186 (248)
Q Consensus 128 ~~l~~~y~~ad~~~v~~s~~e~~gg~~~l-EA~a~G~Pvi~~~~~~-~~~~---~~~~~~~~g~ 186 (248)
..+..+-..+|++-+++..... ..++ |....|+||+.++... ...+ +++.+...|+
T Consensus 181 ~~~~~l~~~vd~lkIgAr~~~n---~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN 241 (350)
T 1vr6_A 181 DDLPKVAEYADIIQIGARNAQN---FRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGN 241 (350)
T ss_dssp GGHHHHHHHCSEEEECGGGTTC---HHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCEEEECcccccC---HHHHHHHHccCCcEEEcCCCCCCHHHHHHHHHHHHHCCC
Confidence 2344444458987665433222 2334 4555899999976553 3333 4555555553
No 244
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=25.26 E-value=1.5e+02 Score=19.54 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHhhhhh
Q 043830 177 MVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQAFCAL-SSGIVANVWNLLNFHVFRRA 246 (248)
Q Consensus 177 ~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 246 (248)
.++.+...+.|.+......++|.+.+..+- |.+...+++..+++-.-. --.-...+...|.+++++|+
T Consensus 17 lv~~~k~~~~~~i~~d~~LqeLy~kv~~lR--PKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE~~l 85 (91)
T 2pjw_V 17 LVEKMKSRPLNEILEDSKLQNLAQRVFASK--ARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLLEQQL 85 (91)
T ss_dssp HHHHHHTCSCSTTTTTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccccCCHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333333344566666665433 556666666555542111 12445567788888888875
No 245
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=25.15 E-value=54 Score=27.14 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=37.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCCCHHH
Q 043830 80 LVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 80 ~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~~~lE 157 (248)
..++-+.+ .. .+..++.++++|++.. + .++.++++. .|++++...-. +-...+++
T Consensus 38 ~~l~av~d-~~-~~~a~~~a~~~g~~~~---------------~----~d~~~ll~~~~iDaV~I~tP~~--~H~~~~~~ 94 (390)
T 4h3v_A 38 PDLNVLCG-RD-AEAVRAAAGKLGWSTT---------------E----TDWRTLLERDDVQLVDVCTPGD--SHAEIAIA 94 (390)
T ss_dssp EEEEEEEC-SS-HHHHHHHHHHHTCSEE---------------E----SCHHHHTTCTTCSEEEECSCGG--GHHHHHHH
T ss_pred ceEEEEEc-CC-HHHHHHHHHHcCCCcc---------------c----CCHHHHhcCCCCCEEEEeCChH--HHHHHHHH
Confidence 45555544 22 2556677777776521 1 245555654 67877743211 11123699
Q ss_pred HHhhCCcEEE
Q 043830 158 AAAAGCAVLT 167 (248)
Q Consensus 158 A~a~G~Pvi~ 167 (248)
|+..|++|++
T Consensus 95 al~aGkhVl~ 104 (390)
T 4h3v_A 95 ALEAGKHVLC 104 (390)
T ss_dssp HHHTTCEEEE
T ss_pred HHHcCCCcee
Confidence 9999999998
No 246
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=25.02 E-value=54 Score=24.22 Aligned_cols=23 Identities=4% Similarity=-0.208 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
++.+++|...|+++++|.+.|.+
T Consensus 112 ~aV~~~L~~~Gv~~~ri~~~g~G 134 (169)
T 3ldt_A 112 ETMMTFLWANGIAAKRLKAEGYG 134 (169)
T ss_dssp HHHHHHHHHTTCCTTTEEECCTT
T ss_pred HHHHHHHHHcCCCHHHEEEEEEC
Confidence 46788999999999999999854
No 247
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=25.01 E-value=29 Score=24.20 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=58.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH
Q 043830 79 NLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS 156 (248)
Q Consensus 79 ~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l 156 (248)
.++++||=+.+.-...+...+++.|..... ....-.+--+++. .-|++++--. -++..|..++
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~--------------~a~~g~eAl~~~~~~~~DlvllDi~-mP~~~G~el~ 72 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAA--------------TASRMQEALDIARKGQFDIAIIDVN-LDGEPSYPVA 72 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCB--------------CSCCHHHHHHHHHHCCSSEEEECSS-SSSCCSHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEE--------------EECCHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHH
Confidence 357788887766546777777777764210 0011112222222 3577655211 2444466666
Q ss_pred HHH-hhCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhh
Q 043830 157 EAA-AAGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFS 207 (248)
Q Consensus 157 EA~-a~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~ 207 (248)
+.+ ..++|||.-...+.. +... .....+++..|-++++|.+++.+++.
T Consensus 73 ~~lr~~~ipvI~lTa~~~~-~~~~--~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 73 DILAERNVPFIFATGYGSK-GLDT--RYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp HHHHHTCCSSCCBCTTCTT-SCCS--SSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred HHHHcCCCCEEEEecCccH-HHHH--hCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 555 358898862211111 1111 11222466677899999998877653
No 248
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.92 E-value=64 Score=21.95 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=40.1
Q ss_pred CeEEEE-ecCCCC---CHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCC
Q 043830 79 NLVTII-VPRHPQ---HGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 79 ~~~lvi-vG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~ 154 (248)
..++++ ++.|.. ....+++.+++.|++..... ...+++...+...|+++++|-.. + -..
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a--------------~~~~~~~~~~~~~DvvLLgPQV~--y-~~~ 68 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS--------------GAYGAHYDIMGVYDLIILAPQVR--S-YYR 68 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEE--------------EETTSCTTTGGGCSEEEECGGGG--G-GHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE--------------cchHHHHhhccCCCEEEEChHHH--H-HHH
Confidence 344444 444433 12567777888887643221 11123445567789988876542 1 112
Q ss_pred HHHHHh--hCCcEEECC
Q 043830 155 ISEAAA--AGCAVLTGP 169 (248)
Q Consensus 155 ~lEA~a--~G~Pvi~~~ 169 (248)
=++..+ .|+||.+-+
T Consensus 69 ~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 69 EMKVDAERLGIQIVATR 85 (108)
T ss_dssp HHHHHHTTTTCEEEECC
T ss_pred HHHHHhhhcCCcEEEeC
Confidence 245544 489999843
No 249
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=24.34 E-value=1.1e+02 Score=24.63 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=26.3
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPH 170 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~ 170 (248)
++.+++..+|+++-+++- +. .-.++..++..|+|+|+|+.
T Consensus 66 dl~~ll~~~DVVIDfT~p-~a-~~~~~~~al~~G~~vVigTT 105 (272)
T 4f3y_A 66 DIERVCAEADYLIDFTLP-EG-TLVHLDAALRHDVKLVIGTT 105 (272)
T ss_dssp CHHHHHHHCSEEEECSCH-HH-HHHHHHHHHHHTCEEEECCC
T ss_pred CHHHHhcCCCEEEEcCCH-HH-HHHHHHHHHHcCCCEEEECC
Confidence 566677789997654321 11 01235678999999999764
No 250
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=24.31 E-value=37 Score=24.13 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
++.+++|...|+++++|.+.|-+
T Consensus 67 ~aV~~~L~~~Gv~~~ri~~~g~G 89 (138)
T 3cyp_B 67 YRVMKVLIQYGVNPNQLSFSSYG 89 (138)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHcCCCHHHEEEEEEC
Confidence 46788898899999999998843
No 251
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=24.04 E-value=16 Score=29.54 Aligned_cols=72 Identities=10% Similarity=-0.010 Sum_probs=40.8
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHhhCCcE-EECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHH
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAAAGCAV-LTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALS 203 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~Pv-i~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~ 203 (248)
.-..++..||++|+.+|..-+ +.. .++|-.--+..| ++||.+.-.++..+..++.= ..+.+.|++.+.+.+.
T Consensus 179 ~~~~~lp~~D~viiTgstlvN-~Tl~~lL~~~~~a~~vvl~GPStp~~P~lf~~Gv~~l--aG~~V~d~~~~~~~i~ 252 (270)
T 3l5o_A 179 ASEFILPECDYVYITCASVVD-KTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQEL--SGFMVKDNARAFRIVA 252 (270)
T ss_dssp GHHHHGGGCSEEEEETHHHHH-TCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEE--EEEEESCHHHHHHHHT
T ss_pred HHHHhhccCCEEEEEeehhhc-CCHHHHHhhCCCCCEEEEECCCchhhHHHHhcCcCEE--EEEEEcCHHHHHHHHh
Confidence 456688999999886653211 111 145544445555 56888766655333222211 3355688888776653
No 252
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=23.78 E-value=1.6e+02 Score=22.75 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCC------CCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCC
Q 043830 65 VMLAVHKVLMQKNPNLVTIIVPRHP------QHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTP 138 (248)
Q Consensus 65 ~ll~a~~~l~~~~~~~~lvivG~~~------~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad 138 (248)
.+.+++..+.+. +-++++++-+. .....+.+..+++|.+... +....+..+.+..||
T Consensus 19 ~~~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~---------------v~~~~d~~~~l~~ad 81 (229)
T 1fy2_A 19 HALPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTG---------------IHRVADPLAAIEKAE 81 (229)
T ss_dssp TTHHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEE---------------TTSSSCHHHHHHHCS
T ss_pred HHHHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE---------------EeccccHHHHHhcCC
Confidence 345555555443 35677777542 1234455666777764211 111123446677899
Q ss_pred EEEEcCccC-------CCCCCC--CHHHHHhhCCcEEE
Q 043830 139 IAVIGGSFL-------PGLAGH--NISEAAAAGCAVLT 167 (248)
Q Consensus 139 ~~~v~~s~~-------e~~gg~--~~lEA~a~G~Pvi~ 167 (248)
.+|+++.-. ... |+ .+-|+...|+|++.
T Consensus 82 ~I~lpGG~~~~~~~~l~~~-gl~~~l~~~~~~G~p~~G 118 (229)
T 1fy2_A 82 IIIVGGGNTFQLLKESRER-GLLAPMADRVKRGALYIG 118 (229)
T ss_dssp EEEECCSCHHHHHHHHHHT-TCHHHHHHHHHTTCEEEE
T ss_pred EEEECCCcHHHHHHHHHHC-ChHHHHHHHHHcCCEEEE
Confidence 988743211 001 22 24556668999985
No 253
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=23.66 E-value=3.1e+02 Score=22.58 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=23.9
Q ss_pred HHHHHHhh--CCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 129 ELRQLYKL--TPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~~--ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++.++++. .|++++..... .....+.+|+..|++|++
T Consensus 74 ~~~~ll~~~~iD~V~i~tp~~--~h~~~~~~al~~Gk~V~~ 112 (383)
T 3oqb_A 74 DLDAALADKNDTMFFDAATTQ--ARPGLLTQAINAGKHVYC 112 (383)
T ss_dssp CHHHHHHCSSCCEEEECSCSS--SSHHHHHHHHTTTCEEEE
T ss_pred CHHHHhcCCCCCEEEECCCch--HHHHHHHHHHHCCCeEEE
Confidence 45566665 78877643221 111236899999999998
No 254
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=23.54 E-value=1.7e+02 Score=24.13 Aligned_cols=69 Identities=13% Similarity=-0.003 Sum_probs=39.2
Q ss_pred hCCCeEEEEec-CCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCC
Q 043830 76 KNPNLVTIIVP-RHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAG 152 (248)
Q Consensus 76 ~~~~~~lvivG-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg 152 (248)
..+++.++-+- ..++ ..++.+++.|+.. ... .++.+++. ..|++++..... ...
T Consensus 45 ~~~~~~lvav~d~~~~---~~~~~a~~~g~~~---------------~~~---~~~~~ll~~~~~D~V~i~tp~~--~h~ 101 (357)
T 3ec7_A 45 TVSGVEVVAVCDIVAG---RAQAALDKYAIEA---------------KDY---NDYHDLINDKDVEVVIITASNE--AHA 101 (357)
T ss_dssp TCTTEEEEEEECSSTT---HHHHHHHHHTCCC---------------EEE---SSHHHHHHCTTCCEEEECSCGG--GHH
T ss_pred hCCCcEEEEEEeCCHH---HHHHHHHHhCCCC---------------eee---CCHHHHhcCCCCCEEEEcCCcH--HHH
Confidence 45788777444 4343 3455556666421 111 24556666 479987743211 111
Q ss_pred CCHHHHHhhCCcEEE
Q 043830 153 HNISEAAAAGCAVLT 167 (248)
Q Consensus 153 ~~~lEA~a~G~Pvi~ 167 (248)
..+.+|+..|++|++
T Consensus 102 ~~~~~al~aGk~Vl~ 116 (357)
T 3ec7_A 102 DVAVAALNANKYVFC 116 (357)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCCEEe
Confidence 236889999999998
No 255
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=23.44 E-value=1.4e+02 Score=24.83 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=39.4
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~ 153 (248)
..+++.++-+-+. . .+..++.+.+.|++. . .++.++++. .|++++...-. ....
T Consensus 24 ~~~~~~l~av~d~-~-~~~~~~~a~~~g~~~-----------------~---~~~~ell~~~~vD~V~i~tp~~--~H~~ 79 (387)
T 3moi_A 24 HHPDAQIVAACDP-N-EDVRERFGKEYGIPV-----------------F---ATLAEMMQHVQMDAVYIASPHQ--FHCE 79 (387)
T ss_dssp HCTTEEEEEEECS-C-HHHHHHHHHHHTCCE-----------------E---SSHHHHHHHSCCSEEEECSCGG--GHHH
T ss_pred hCCCeEEEEEEeC-C-HHHHHHHHHHcCCCe-----------------E---CCHHHHHcCCCCCEEEEcCCcH--HHHH
Confidence 3467777655442 2 144555566666541 1 245566665 89988743211 1012
Q ss_pred CHHHHHhhCCcEEE
Q 043830 154 NISEAAAAGCAVLT 167 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~ 167 (248)
.+.+|+..|++|++
T Consensus 80 ~~~~al~aGk~Vl~ 93 (387)
T 3moi_A 80 HVVQASEQGLHIIV 93 (387)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCceee
Confidence 36899999999998
No 256
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=23.27 E-value=1.4e+02 Score=19.15 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCce
Q 043830 66 MLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVV 106 (248)
Q Consensus 66 ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~ 106 (248)
+-+-+..+++...|++++|.-+..+..+..+++++++.+..
T Consensus 38 lkkyleefrkesqnikvlilvsndeeldkakelaqkmeidv 78 (110)
T 2kpo_A 38 LKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDV 78 (110)
T ss_dssp HHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceee
Confidence 33444445666678887776665656677888888887754
No 257
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=23.11 E-value=1.9e+02 Score=22.41 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=43.9
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChh
Q 043830 49 HRQVWMASSIHRGEEKVMLAVHKVLMQKNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLG 128 (248)
Q Consensus 49 ~~~v~l~~~~~~~~~~~ll~a~~~l~~~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~ 128 (248)
+++++++|+. + .....+..|.+...++ .||.+. ..+++++++.+.++... ...+.
T Consensus 31 gk~VLVVGgG---~--va~~ka~~Ll~~GA~V-tVvap~---~~~~l~~l~~~~~i~~i----------------~~~~~ 85 (223)
T 3dfz_A 31 GRSVLVVGGG---T--IATRRIKGFLQEGAAI-TVVAPT---VSAEINEWEAKGQLRVK----------------RKKVG 85 (223)
T ss_dssp TCCEEEECCS---H--HHHHHHHHHGGGCCCE-EEECSS---CCHHHHHHHHTTSCEEE----------------CSCCC
T ss_pred CCEEEEECCC---H--HHHHHHHHHHHCCCEE-EEECCC---CCHHHHHHHHcCCcEEE----------------ECCCC
Confidence 5678777753 2 2233344455554443 234333 22678887766544321 11110
Q ss_pred HHHHHHhhCCEEEEcCccCCCCCCCCHHHHHhhCCcEEECCC
Q 043830 129 ELRQLYKLTPIAVIGGSFLPGLAGHNISEAAAAGCAVLTGPH 170 (248)
Q Consensus 129 ~l~~~y~~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~~~~ 170 (248)
+..+..+|++|..+...+ . -..+.+..-.|+||-+.++
T Consensus 86 --~~dL~~adLVIaAT~d~~-~-N~~I~~~ak~gi~VNvvD~ 123 (223)
T 3dfz_A 86 --EEDLLNVFFIVVATNDQA-V-NKFVKQHIKNDQLVNMASS 123 (223)
T ss_dssp --GGGSSSCSEEEECCCCTH-H-HHHHHHHSCTTCEEEC---
T ss_pred --HhHhCCCCEEEECCCCHH-H-HHHHHHHHhCCCEEEEeCC
Confidence 223566888766433211 1 1123444447888876443
No 258
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=22.98 E-value=35 Score=23.81 Aligned_cols=23 Identities=13% Similarity=-0.171 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
++.+++|...|+++++|.+.|.+
T Consensus 82 ~aV~~~L~~~Gi~~~ri~~~g~G 104 (129)
T 2kgw_A 82 KIVADYLVARGVAGDHIATVGLG 104 (129)
T ss_dssp HHHHHHHHHHTCCGGGEEEEECT
T ss_pred HHHHHHHHHcCCCHHHEEEEEEc
Confidence 46788898899999999998754
No 259
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=22.90 E-value=1e+02 Score=20.23 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhhCCEEEEcCccCCCCCCCCHHH
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKLTPIAVIGGSFLPGLAGHNISE 157 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~ad~~~v~~s~~e~~gg~~~lE 157 (248)
.+..+++-|.-....+++++++..+|-...-.. -...|+++++. .. |-.+-.
T Consensus 9 ~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sV-----------------------skkt~~LV~g~----~~-gsK~~k 60 (92)
T 1l7b_A 9 KGLTFVITGELSRPREEVKALLRRLGAKVTDSV-----------------------SRKTSYLVVGE----NP-GSKLEK 60 (92)
T ss_dssp TTCEEECSTTTTSCHHHHHHHHHHTTCEEESCC-----------------------SSSCCCBEECS----SS-STTHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcc-----------------------cCCeeEEEeCC----CC-ChHHHH
Confidence 356788888643334899999999887532111 12344545542 22 566889
Q ss_pred HHhhCCcEEE
Q 043830 158 AAAAGCAVLT 167 (248)
Q Consensus 158 A~a~G~Pvi~ 167 (248)
|..+|+|||.
T Consensus 61 A~~lgI~Ii~ 70 (92)
T 1l7b_A 61 ARALGVPTLT 70 (92)
T ss_dssp HHCSSSCCEE
T ss_pred HHHcCCcEEe
Confidence 9999999995
No 260
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=22.86 E-value=3e+02 Score=22.23 Aligned_cols=70 Identities=10% Similarity=-0.061 Sum_probs=40.4
Q ss_pred hCCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHhh--CCEEEEcCccCCCCCCC
Q 043830 76 KNPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYKL--TPIAVIGGSFLPGLAGH 153 (248)
Q Consensus 76 ~~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~~--ad~~~v~~s~~e~~gg~ 153 (248)
..+++.++-+-+. . .+..++.+++.|+.. ... .++.+++.. .|++++..... ....
T Consensus 24 ~~~~~~l~av~d~-~-~~~~~~~~~~~g~~~---------------~~~---~~~~~ll~~~~~D~V~i~tp~~--~h~~ 81 (344)
T 3mz0_A 24 KLSGAEIVAVTDV-N-QEAAQKVVEQYQLNA---------------TVY---PNDDSLLADENVDAVLVTSWGP--AHES 81 (344)
T ss_dssp TCSSEEEEEEECS-S-HHHHHHHHHHTTCCC---------------EEE---SSHHHHHHCTTCCEEEECSCGG--GHHH
T ss_pred hCCCcEEEEEEcC-C-HHHHHHHHHHhCCCC---------------eee---CCHHHHhcCCCCCEEEECCCch--hHHH
Confidence 4577877644432 2 245666666766421 111 245666765 89987743211 1012
Q ss_pred CHHHHHhhCCcEEE
Q 043830 154 NISEAAAAGCAVLT 167 (248)
Q Consensus 154 ~~lEA~a~G~Pvi~ 167 (248)
.+.+++..|++|++
T Consensus 82 ~~~~al~~Gk~vl~ 95 (344)
T 3mz0_A 82 SVLKAIKAQKYVFC 95 (344)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCcEEE
Confidence 36889999999998
No 261
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=22.85 E-value=40 Score=24.88 Aligned_cols=23 Identities=13% Similarity=-0.165 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
++.+++|...|+++++|.+.|-+
T Consensus 73 ~aV~~~L~~~Gi~~~ri~~~G~G 95 (164)
T 1r1m_A 73 YVVANNLVSNGVPVSRISAVGLG 95 (164)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHcCCCHHHEEEEEEC
Confidence 46788999999999999998843
No 262
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=22.60 E-value=3.1e+02 Score=22.21 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=38.7
Q ss_pred HHHhhCCEEEEcCccCCCCCCC-CHHHHHhhCCcEEECCC--CCChHHHHHHHHhcCCceEEEcCCHHHHHHH
Q 043830 132 QLYKLTPIAVIGGSFLPGLAGH-NISEAAAAGCAVLTGPH--IGHYSNMVSAMQRLNPKSVLQVSGKSELEEA 201 (248)
Q Consensus 132 ~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~G~Pvi~~~~--~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~ 201 (248)
-+...|+.++|--+-..+ |.+ +.-.|+-.|+||.+-|. ......-...+...| +..+.+++++.+.
T Consensus 211 iIagLS~~~vVvEA~~~S-GsliTA~~Ale~gR~VfavPG~i~~~~s~G~n~LI~~G---A~lv~~~~Dil~e 279 (288)
T 3uqz_A 211 IIAGLCRGVIVAEAKMRS-GSLITCERAMEEGRDVFAIPGSILDGLSDGCHHLIQEG---AKLVTSGQDVLAE 279 (288)
T ss_dssp HHHHHCSEEEEESCCTTC-HHHHHHHHHHHTTCEEEECCCCSSSSTTHHHHHHHHTT---CEECSSHHHHHHH
T ss_pred HHHHcCCeEEEEecCCCC-hHHHHHHHHHHcCCeEEEECCCCCCccchHHHHHHHCC---CEEECCHHHHHHH
Confidence 345566666664443332 232 57899999999998442 111122234455666 4566888887554
No 263
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=22.12 E-value=1.7e+02 Score=24.80 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=41.9
Q ss_pred HHhhCCEEEEcCccCCCCCC-CCHHHHHhhCCcEEECCC--CCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhh
Q 043830 133 LYKLTPIAVIGGSFLPGLAG-HNISEAAAAGCAVLTGPH--IGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 133 ~y~~ad~~~v~~s~~e~~gg-~~~lEA~a~G~Pvi~~~~--~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll 206 (248)
+...|+.++|--+-..+ |. .+.-.|+-.|+||.+-|. ......-...+.+.| +..+.+++++.+.+..+.
T Consensus 233 IagLS~~vvVvEA~~kS-GsliTA~~Ale~gR~VfavPG~i~~~~s~G~n~LI~~G---A~lv~~~~Dil~~l~~~~ 305 (382)
T 3maj_A 233 ISGASVGVAVIEAAYRS-GSLITARRAADQGREVFAVPGSPLDPRAAGTNDLIKQG---ATLITSASDIVEAVASIL 305 (382)
T ss_dssp HHHHCSCEEECCCCTTC-THHHHHHHHHHHTCCEEECCCCTTCGGGHHHHHHHHTT---CEECSSHHHHHHHHTTTC
T ss_pred HHHhCCceEEEecCCCC-cHHHHHHHHHHhCCcEEEEcCCCCCcccccHHHHHHCC---CEEECCHHHHHHHhhhhh
Confidence 34556665664333232 22 246789999999998552 111223344566666 356789999988776443
No 264
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=22.00 E-value=42 Score=24.61 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
.+.+++|...|+++++|.+.|.+
T Consensus 95 ~aV~~~L~~~Gv~~~ri~~~g~G 117 (166)
T 3s06_A 95 YRVMKVLIQYGVNPNQLSFSSYG 117 (166)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHcCCChHhEEEEEEC
Confidence 46788999999999999998843
No 265
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=21.98 E-value=1.3e+02 Score=25.74 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=24.0
Q ss_pred HHHHHHh--hCCEEEEcCccCCCCCCCCHHHHHhhCCcEEE
Q 043830 129 ELRQLYK--LTPIAVIGGSFLPGLAGHNISEAAAAGCAVLT 167 (248)
Q Consensus 129 ~l~~~y~--~ad~~~v~~s~~e~~gg~~~lEA~a~G~Pvi~ 167 (248)
++.++++ ..|++++..... .....+++|+..|++|++
T Consensus 82 ~~~~ll~~~~vD~V~i~tp~~--~h~~~~~~al~aGkhV~~ 120 (444)
T 2ixa_A 82 DYKNMLKDKNIDAVFVSSPWE--WHHEHGVAAMKAGKIVGM 120 (444)
T ss_dssp THHHHTTCTTCCEEEECCCGG--GHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEcCCcH--HHHHHHHHHHHCCCeEEE
Confidence 4566676 478887743211 111236889999999998
No 266
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=21.51 E-value=2.8e+02 Score=21.37 Aligned_cols=155 Identities=11% Similarity=0.101 Sum_probs=78.7
Q ss_pred HHHHHcCCCCCCeEEcCCcccccccCCCCCCcccHHHHHHhcCCCeEEEEeCC-CcchHHHHHHHHHHHHHhCCCeEEEE
Q 043830 6 IRFQLLEASPFTINFSGDLKYVHEYDESEGDIGSIEDLKASLAHRQVWMASSI-HRGEEKVMLAVHKVLMQKNPNLVTII 84 (248)
Q Consensus 6 ~~l~~~gv~~~kI~v~gn~~~d~~~~~~~~~~~~~~~~r~~~~~~~v~l~~~~-~~~~~~~ll~a~~~l~~~~~~~~lvi 84 (248)
+.+.+.|++--++.|+- +.|-+... .-+...+++|+..++.++.+-... .+. ..++.+.. .|+..+.
T Consensus 25 ~~~~~~g~d~iHvDvmD-g~fvpn~t---~G~~~v~~lr~~~p~~~~dvhLmv~dp~---~~i~~~~~-----Ad~itvH 92 (227)
T 1tqx_A 25 QRMESLGAEWIHLDVMD-MHFVPNLS---FGPPVINNLKKYTKSIFFDVHLMVEYPE---KYVPLLKT-----SNQLTFH 92 (227)
T ss_dssp HHHHHTTCSEEEEEEEB-SSSSSCBC---CCHHHHHHHGGGCSSCEEEEEEESSCGG---GGGGGCTT-----SSEEEEE
T ss_pred HHHHHcCCCEEEEEEEe-CCcCcchh---cCHHHHHHHHHhCCCCcEEEEEEEcCHH---HHHHHHHh-----CCEEEEe
Confidence 34445576644555541 12222111 112345677765545665443222 222 22344322 5666666
Q ss_pred ecCCCCCHHHHHH---HHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCCHH---
Q 043830 85 VPRHPQHGKEIAQ---KLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHNIS--- 156 (248)
Q Consensus 85 vG~~~~~~~~l~~---~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~~l--- 156 (248)
.+...+...+..+ .+++.|....+-..- . .+.+.+..++. ..|.+++. |..+||+|+...
T Consensus 93 ~ea~~~~~~~~i~~~~~i~~~G~k~gvalnp-----~------tp~~~~~~~l~~g~~D~Vlvm-sV~pGf~gq~f~~~~ 160 (227)
T 1tqx_A 93 FEALNEDTERCIQLAKEIRDNNLWCGISIKP-----K------TDVQKLVPILDTNLINTVLVM-TVEPGFGGQSFMHDM 160 (227)
T ss_dssp GGGGTTCHHHHHHHHHHHHTTTCEEEEEECT-----T------SCGGGGHHHHTTTCCSEEEEE-SSCTTCSSCCCCGGG
T ss_pred ecCCccCHHHHHHHHHHHHHcCCeEEEEeCC-----C------CcHHHHHHHhhcCCcCEEEEe-eeccCCCCcccchHH
Confidence 6654423456666 788888764332110 0 12346778888 79997664 556788887642
Q ss_pred -H---H---HhhCCcEEECCCCCChHHHHHHHHhcCC
Q 043830 157 -E---A---AAAGCAVLTGPHIGHYSNMVSAMQRLNP 186 (248)
Q Consensus 157 -E---A---~a~G~Pvi~~~~~~~~~~~~~~~~~~g~ 186 (248)
| . +.-+.++.+. +|-..+.+..+.+.|.
T Consensus 161 l~ki~~lr~~~~~~~I~Vd--GGI~~~ti~~~~~aGA 195 (227)
T 1tqx_A 161 MGKVSFLRKKYKNLNIQVD--GGLNIETTEISASHGA 195 (227)
T ss_dssp HHHHHHHHHHCTTCEEEEE--SSCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccCCeEEEE--CCCCHHHHHHHHHcCC
Confidence 2 1 2226777762 2222345555666665
No 267
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=21.33 E-value=41 Score=24.06 Aligned_cols=23 Identities=9% Similarity=-0.240 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
++.+++|...|+++++|.+.|.+
T Consensus 82 ~aV~~~L~~~Gv~~~ri~~~g~G 104 (148)
T 4erh_A 82 QSVVDYLISKGIPSDKISARGMG 104 (148)
T ss_dssp HHHHHHHHTTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHcCCCHHHEEEEEEc
Confidence 46788999999999999998743
No 268
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=21.19 E-value=3.5e+02 Score=22.24 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHhcCCceEEec--------ccCCCCCCccEE--EE-cChhHHHHHHhhCCEEEE
Q 043830 78 PNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRS--------RHEKLMPRTNVY--VV-DTLGELRQLYKLTPIAVI 142 (248)
Q Consensus 78 ~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~~~~v~--~~-~~~~~l~~~y~~ad~~~v 142 (248)
..-+++|+|.|.--...+...+...|-...+.. .........+.+ +. -...++.+..+.||++|.
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 356899999986544555666666664321110 000000000111 00 001589999999999765
No 269
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=21.00 E-value=2.3e+02 Score=23.50 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=9.1
Q ss_pred EEEcChhHH-HHHHhhCCE
Q 043830 122 YVVDTLGEL-RQLYKLTPI 139 (248)
Q Consensus 122 ~~~~~~~~l-~~~y~~ad~ 139 (248)
|+++..++| +.|+.....
T Consensus 255 y~Ie~~~el~~~wl~g~~~ 273 (328)
T 3szu_A 255 FLIDDAKDIQEEWVKEVKC 273 (328)
T ss_dssp EEESSGGGCCHHHHTTCSE
T ss_pred EEeCChHHCCHHHhCCCCE
Confidence 455544454 556654443
No 270
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=20.70 E-value=1.1e+02 Score=20.76 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=35.3
Q ss_pred HHHHHh-hCCcEEECCCCCChHHHHHHHHhcCCceEEEcCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 043830 155 ISEAAA-AGCAVLTGPHIGHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQLFSDARVLEAQQMAAKQA 222 (248)
Q Consensus 155 ~lEA~a-~G~Pvi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 222 (248)
+++... -|-||+++.++. +...++...+.+.|.+.+ .||++|+.++.+.+.-.+.
T Consensus 23 ll~~v~~~~epViITr~G~------------~~aVl~s~e~ye~l~etl-~LL~~~~~~~~L~~a~~~~ 78 (108)
T 3g5o_A 23 FVDAVSSTQDQITITKNGA------------PAAVLVGADEWESLQETL-YWLAQPGIRESIAEADADI 78 (108)
T ss_dssp HHHHHHTSSCEEEEEETTE------------EEEEEEEHHHHHHHHHHH-HHHTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcEEEEECCC------------CcEEEecHHHHHHHHHHH-HHhcChHHHHHHHHHHHHH
Confidence 455554 689999975431 111345557778887655 5778888888877765543
No 271
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=20.67 E-value=45 Score=24.53 Aligned_cols=73 Identities=18% Similarity=0.081 Sum_probs=38.3
Q ss_pred HHHHhhCCEEEEcCccCCCCCCCCHHH---HHhhCCcEEEC-CCC--CChHHHHHHHHhcCCceEEEcCCHHHHHHHHHH
Q 043830 131 RQLYKLTPIAVIGGSFLPGLAGHNISE---AAAAGCAVLTG-PHI--GHYSNMVSAMQRLNPKSVLQVSGKSELEEALSQ 204 (248)
Q Consensus 131 ~~~y~~ad~~~v~~s~~e~~gg~~~lE---A~a~G~Pvi~~-~~~--~~~~~~~~~~~~~g~g~~~~~~~~~~l~~~i~~ 204 (248)
..++..||++++-.+ .+. .-+.+| |.+.|+||++- +.. ....-... ......-+-+..-|.+++...+..
T Consensus 72 ~~~i~~aD~vva~~~-~~d--~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~-g~~~~~~~~~~~y~~~el~~~l~~ 147 (165)
T 2khz_A 72 LNWLQQADVVVAEVT-QPS--LGVGYELGRAVALGKPILCLFRPQSGRVLSAMIR-GAADGSRFQVWDYAEGEVETMLDR 147 (165)
T ss_dssp HHHHHHCSEEEEECS-SCC--HHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHH-HTCCSSSEEEEECCTTTHHHHHHH
T ss_pred HHHHHhCCEEEEECC-CCC--CCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhc-ccCccceeEEEecCHHHHHHHHHH
Confidence 377999999877443 221 123455 68999999972 221 12212221 111100012222377888777776
Q ss_pred hhh
Q 043830 205 LFS 207 (248)
Q Consensus 205 ll~ 207 (248)
.+.
T Consensus 148 ~~~ 150 (165)
T 2khz_A 148 YFE 150 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 272
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=20.65 E-value=80 Score=27.49 Aligned_cols=82 Identities=6% Similarity=0.076 Sum_probs=45.7
Q ss_pred EEEcChh-HHHHHHhhCCEEEEcCccCCCCCCC-CHHHHHhh---C------CcEEECCC---CCChHHHHHHHHh---c
Q 043830 122 YVVDTLG-ELRQLYKLTPIAVIGGSFLPGLAGH-NISEAAAA---G------CAVLTGPH---IGHYSNMVSAMQR---L 184 (248)
Q Consensus 122 ~~~~~~~-~l~~~y~~ad~~~v~~s~~e~~gg~-~~lEA~a~---G------~Pvi~~~~---~~~~~~~~~~~~~---~ 184 (248)
++++++. ....+...||.+++.|. |+|.+ -++|++.. | +|||..+. .+-+....+.+.. .
T Consensus 232 iiv~~m~~RK~~mv~~SDAfIaLPG---G~GTLEELfE~LTw~qLgtgk~h~kPIVLln~~~~~gYwd~Ll~fL~~~v~e 308 (462)
T 3gh1_A 232 VIMPDIEKRLEAFVRMAHGIIIFPG---GPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGE 308 (462)
T ss_dssp EECSSHHHHHHHHHHHCSEEEECSC---SHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHHCG
T ss_pred EEeCCHHHHHHHHHHHCCEEEEcCC---CcchHHHHHHHHHHHhcccCcCCCCCEEEEcCCCcccHHHHHHHHHHHHhhh
Confidence 3445543 35566788999777542 22112 16788774 4 79997432 1233333332221 1
Q ss_pred C-C-ceEEEcCCHHHHHHHHHHhh
Q 043830 185 N-P-KSVLQVSGKSELEEALSQLF 206 (248)
Q Consensus 185 g-~-g~~~~~~~~~~l~~~i~~ll 206 (248)
+ . .....++|++++.+.|....
T Consensus 309 g~~~~~~iv~DdpeEvl~~i~~~~ 332 (462)
T 3gh1_A 309 AARKHYSIAIDNPAEAARIMSNAM 332 (462)
T ss_dssp GGGGGCEEEESCHHHHHHHHHHHH
T ss_pred hhhhccEEEcCCHHHHHHHHHHHH
Confidence 1 0 13345699999999887766
No 273
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=20.47 E-value=3.5e+02 Score=23.86 Aligned_cols=64 Identities=5% Similarity=-0.016 Sum_probs=37.5
Q ss_pred EEEecCCCC---CHHHHHHHHHhcCCceEEecccCC-CCCCccEEE---EcCh--hHHHHHHhhCCEEEEcCc
Q 043830 82 TIIVPRHPQ---HGKEIAQKLQKEGEVVALRSRHEK-LMPRTNVYV---VDTL--GELRQLYKLTPIAVIGGS 145 (248)
Q Consensus 82 lvivG~~~~---~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~v~~---~~~~--~~l~~~y~~ad~~~v~~s 145 (248)
++++|.+.. ..+++.+++++++++......+.. .+.+...++ .+.. .....++..||++++.++
T Consensus 213 vi~~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~ 285 (566)
T 2vbi_A 213 VMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAP 285 (566)
T ss_dssp EEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESC
T ss_pred EEEECcCccccchHHHHHHHHHHhCCCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECC
Confidence 678887642 347899999999998654443321 111111121 1211 245667888999887554
No 274
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=20.39 E-value=59 Score=24.50 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCCCCeEEcCCc
Q 043830 2 TLQAIRFQLLEASPFTINFSGDL 24 (248)
Q Consensus 2 ~~~~~~l~~~gv~~~kI~v~gn~ 24 (248)
.+.+++|...|+++++|.+.|.+
T Consensus 122 ~aV~~~L~~~Gv~~~ri~~~g~G 144 (193)
T 3s0y_A 122 YRVMKVLIQYGVNPNQLSFSSYG 144 (193)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHcCCCHHHEEEEEEC
Confidence 46788999999999999998854
No 275
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=20.29 E-value=2.4e+02 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=19.1
Q ss_pred CCeEEEEecC---CCCCHHHHHHHHHhcCC
Q 043830 78 PNLVTIIVPR---HPQHGKEIAQKLQKEGE 104 (248)
Q Consensus 78 ~~~~lvivG~---~~~~~~~l~~~~~~~~l 104 (248)
.+..|.|.|. .+....+|++++++.|=
T Consensus 4 ~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG 33 (241)
T 2vxb_A 4 DDCVFAFSGPVHEDAYDRSALETVVQDHGG 33 (241)
T ss_dssp TTEEEEECCCSSTTSSCHHHHHHHHHHTTC
T ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHCCC
Confidence 4567777776 34455889999988774
No 276
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=20.27 E-value=3.4e+02 Score=21.82 Aligned_cols=68 Identities=16% Similarity=0.045 Sum_probs=40.0
Q ss_pred CCCeEEEEecCCCCCHHHHHHHHHhcCCceEEecccCCCCCCccEEEEcChhHHHHHHh--hCCEEEEcCccCCCCCCCC
Q 043830 77 NPNLVTIIVPRHPQHGKEIAQKLQKEGEVVALRSRHEKLMPRTNVYVVDTLGELRQLYK--LTPIAVIGGSFLPGLAGHN 154 (248)
Q Consensus 77 ~~~~~lvivG~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~l~~~y~--~ad~~~v~~s~~e~~gg~~ 154 (248)
.+++.++-+-+. .. +..++.+.+.+.... +.++.+++. ..|++++...... ....
T Consensus 27 ~~~~~l~av~d~-~~-~~~~~~~~~~~~~~~-------------------~~~~~~ll~~~~~D~V~i~tp~~~--h~~~ 83 (330)
T 3e9m_A 27 SAQAEVRGIASR-RL-ENAQKMAKELAIPVA-------------------YGSYEELCKDETIDIIYIPTYNQG--HYSA 83 (330)
T ss_dssp SSSEEEEEEBCS-SS-HHHHHHHHHTTCCCC-------------------BSSHHHHHHCTTCSEEEECCCGGG--HHHH
T ss_pred CCCcEEEEEEeC-CH-HHHHHHHHHcCCCce-------------------eCCHHHHhcCCCCCEEEEcCCCHH--HHHH
Confidence 367777644432 22 455666666665310 124566676 6899877432111 0123
Q ss_pred HHHHHhhCCcEEE
Q 043830 155 ISEAAAAGCAVLT 167 (248)
Q Consensus 155 ~lEA~a~G~Pvi~ 167 (248)
+.+|+..|++|++
T Consensus 84 ~~~al~~gk~vl~ 96 (330)
T 3e9m_A 84 AKLALSQGKPVLL 96 (330)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHHCCCeEEE
Confidence 6889999999998
Done!