Your job contains 1 sequence.
>043831
MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRAC
FGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL
LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSD
IHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERTISRWSPEQCREDPATVAN
GIK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043831
(243 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2144060 - symbol:SEN2 "splicing endonuclease 2... 664 3.2e-65 1
TAIR|locus:2085687 - symbol:SEN1 "splicing endonuclease 1... 663 4.1e-65 1
MGI|MGI:2141599 - symbol:Tsen2 "tRNA splicing endonucleas... 247 1.9e-20 1
RGD|1309946 - symbol:Tsen2 "tRNA splicing endonuclease 2 ... 240 1.1e-19 1
UNIPROTKB|Q5M954 - symbol:Tsen2 "tRNA-splicing endonuclea... 240 1.1e-19 1
TAIR|locus:1009023257 - symbol:AT3G45577 species:3702 "Ar... 230 3.1e-19 1
UNIPROTKB|A6H7E5 - symbol:TSEN2 "Uncharacterized protein"... 226 3.8e-18 1
ZFIN|ZDB-GENE-060929-918 - symbol:tsen2 "tRNA splicing en... 224 5.4e-18 1
UNIPROTKB|F1NIA3 - symbol:TSEN2 "tRNA-splicing endonuclea... 223 8.2e-18 1
UNIPROTKB|Q5ZIN2 - symbol:TSEN2 "tRNA-splicing endonuclea... 223 8.2e-18 1
UNIPROTKB|F1SQ91 - symbol:TSEN2 "Uncharacterized protein"... 221 1.4e-17 1
UNIPROTKB|E2RAH2 - symbol:TSEN2 "Uncharacterized protein"... 218 3.1e-17 1
UNIPROTKB|B7Z355 - symbol:TSEN2 "cDNA FLJ55685, highly si... 217 3.2e-17 1
UNIPROTKB|Q8NCE0 - symbol:TSEN2 "tRNA-splicing endonuclea... 217 3.8e-17 1
FB|FBgn0051812 - symbol:CG31812 species:7227 "Drosophila ... 160 1.0e-10 1
DICTYBASE|DDB_G0282855 - symbol:DDB_G0282855 "tRNA-splici... 128 5.7e-10 4
UNIPROTKB|J9P3E0 - symbol:TSEN2 "Uncharacterized protein"... 157 3.0e-09 1
UNIPROTKB|I3LE08 - symbol:TSEN2 "Uncharacterized protein"... 152 1.2e-08 1
POMBASE|SPAPB17E12.07c - symbol:sen2 "tRNA-splicing endon... 149 2.6e-08 1
UNIPROTKB|C9J7Z4 - symbol:TSEN2 "tRNA-splicing endonuclea... 148 3.4e-08 1
CGD|CAL0004215 - symbol:SEN2 species:5476 "Candida albica... 136 1.0e-06 1
UNIPROTKB|Q5AF73 - symbol:SEN2 "Potential tRNA splicing e... 136 1.0e-06 1
ASPGD|ASPL0000097796 - symbol:AN12203 species:162425 "Eme... 137 3.8e-05 2
ASPGD|ASPL0000093047 - symbol:AN12204 species:162425 "Eme... 137 3.8e-05 2
SGD|S000004095 - symbol:SEN2 "Subunit of the tRNA splicin... 119 9.5e-05 1
>TAIR|locus:2144060 [details] [associations]
symbol:SEN2 "splicing endonuclease 2" species:3702
"Arabidopsis thaliana" [GO:0000213 "tRNA-intron endonuclease
activity" evidence=IEA;ISS] [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA;ISS]
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
Pfam:PF01974 Pfam:PF02778 EMBL:CP002688 GO:GO:0003676 GO:GO:0004518
GO:GO:0006388 Gene3D:3.40.1350.10 KO:K15322 GO:GO:0000213
SUPFAM:SSF53032 IPI:IPI00531531 RefSeq:NP_974966.1 UniGene:At.29175
ProteinModelPortal:F4JYW0 SMR:F4JYW0 EnsemblPlants:AT5G60230.2
GeneID:836145 KEGG:ath:AT5G60230 OMA:CLENEVD Uniprot:F4JYW0
Length = 255
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 131/240 (54%), Positives = 169/240 (70%)
Query: 1 MGPRWKGRASEAKSSGRSHVQNHLRFTFLSI-QSEAHAVLAGYSALLAVEAEQTELLNRA 59
M PRWK + +EAK+ + + LS+ ++E+ L+ + LLAVE EQ ELL+R
Sbjct: 6 MAPRWKWKGAEAKALAEP-ISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRC 64
Query: 60 CFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFP 119
CFGR +++AEK K+W QL EE F+L ++LKC+KI + +N+ + W YMK+K+ FP
Sbjct: 65 CFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFP 124
Query: 120 LLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWS 179
+ +KAYSHLR KNWV+RSG QYGVDFVAYRHHPSLVHSEY+VLV + G++ RLRVWS
Sbjct: 125 MFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV----QSGDSDRLRVWS 180
Query: 180 DIHCTVRLCGGVAKTLLILTINKN--GQGTATPSCLEQYAVEERTISRWSPEQCREDPAT 237
DIHC VRL G VAKTLL L +N N G+ CLE + VEE+TISRWSPE RED +T
Sbjct: 181 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 240
>TAIR|locus:2085687 [details] [associations]
symbol:SEN1 "splicing endonuclease 1" species:3702
"Arabidopsis thaliana" [GO:0000213 "tRNA-intron endonuclease
activity" evidence=IEA;ISS] [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA;ISS]
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
Pfam:PF01974 Pfam:PF02778 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006397 GO:GO:0003676 GO:GO:0090305
GO:GO:0006388 EMBL:AL138657 Gene3D:3.40.1350.10 EMBL:AB036339
EMBL:AB036340 EMBL:AK221492 IPI:IPI00525737 PIR:T47499
RefSeq:NP_001078245.1 RefSeq:NP_190145.1 UniGene:At.22349
UniGene:At.70243 ProteinModelPortal:Q9M1E8 SMR:Q9M1E8 STRING:Q9M1E8
EnsemblPlants:AT3G45590.1 EnsemblPlants:AT3G45590.2 GeneID:823701
KEGG:ath:AT3G45590 GeneFarm:5164 TAIR:At3g45590 eggNOG:COG1676
HOGENOM:HOG000030044 InParanoid:Q9M1E8 KO:K15322 OMA:NWIVRSG
PhylomeDB:Q9M1E8 ProtClustDB:CLSN2684758 Genevestigator:Q9M1E8
GermOnline:AT3G45590 GO:GO:0000213 SUPFAM:SSF53032 Uniprot:Q9M1E8
Length = 237
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 134/238 (56%), Positives = 168/238 (70%)
Query: 1 MGPRWKGRASEAKSSGR--SHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNR 58
M PRWK + +EAK+ S + LR + Q+EA L+ + LL+VE+E+ ELL+R
Sbjct: 1 MAPRWKWKGAEAKALAEPVSKTVSELRSSLT--QTEALGFLSSCNVLLSVESEEAELLDR 58
Query: 59 ACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118
CFGR +V AEKDK+W QL EE F+L + LKC+KI S +N+ +LW+ M + K+ F
Sbjct: 59 CCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSFKQDF 118
Query: 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVW 178
+LYKAYSHLR KNW+VRSG QYGVDFV YRHHPSLVHSEYAVLV + G G N RL+VW
Sbjct: 119 AILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIG--G-NDRLKVW 175
Query: 179 SDIHCTVRLCGGVAKTLLILTINK--NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
SDIHC+VRL G VAK+LL+L +N+ N + P CLE Y VEE+TI RWSPE RED
Sbjct: 176 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233
>MGI|MGI:2141599 [details] [associations]
symbol:Tsen2 "tRNA splicing endonuclease 2 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000213 "tRNA-intron
endonuclease activity" evidence=IEA] [GO:0000214 "tRNA-intron
endonuclease complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778 PIRSF:PIRSF011789
MGI:MGI:2141599 GO:GO:0005737 GO:GO:0005813 GO:GO:0005730
GO:GO:0006397 GO:GO:0003676 GO:GO:0090305 GO:GO:0000214
GO:GO:0006388 Gene3D:3.40.1350.10 eggNOG:COG1676 KO:K15322
GO:GO:0000213 SUPFAM:SSF53032 CTD:80746 HOGENOM:HOG000154285
HOVERGEN:HBG056610 OrthoDB:EOG4Z36DM EMBL:AK134697 EMBL:BC061473
IPI:IPI00125172 RefSeq:NP_950198.1 UniGene:Mm.291208
ProteinModelPortal:Q6P7W5 SMR:Q6P7W5 STRING:Q6P7W5
PhosphoSite:Q6P7W5 PRIDE:Q6P7W5 Ensembl:ENSMUST00000040234
GeneID:381802 KEGG:mmu:381802 UCSC:uc009diu.1
GeneTree:ENSGT00390000013266 InParanoid:Q6P7W5 OMA:ERSDQDE
NextBio:402575 Bgee:Q6P7W5 Genevestigator:Q6P7W5
GermOnline:ENSMUSG00000042389 Uniprot:Q6P7W5
Length = 460
Score = 247 (92.0 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 56/168 (33%), Positives = 86/168 (51%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LWQ A + TF Y AY + R K
Sbjct: 290 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 348
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV--LAEGEDGENGRLRVWSDIHCTVRLCGG 190
WV + G +YG D + YR P H+ Y+V++ L + +G R W + R+ G
Sbjct: 349 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELLDDNYEGSLRRPFSWKSLAALSRVSGN 408
Query: 191 VAKTLLILTINKNGQGTA----TPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K TA TP C+++ V+E +SRW + R D
Sbjct: 409 VSKELMLCYLIKPSTMTAEDMETPECMKRIQVQEVILSRWVSSRERSD 456
>RGD|1309946 [details] [associations]
symbol:Tsen2 "tRNA splicing endonuclease 2 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000213
"tRNA-intron endonuclease activity" evidence=IEA] [GO:0000214
"tRNA-intron endonuclease complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005813 "centrosome"
evidence=IEA;ISO] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=IEA;ISO] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR006677 InterPro:IPR006678
InterPro:IPR011856 InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778
PIRSF:PIRSF011789 RGD:1309946 GO:GO:0005737 GO:GO:0005813
GO:GO:0005730 GO:GO:0006397 GO:GO:0003676 GO:GO:0090305
GO:GO:0000214 GO:GO:0006388 Gene3D:3.40.1350.10 eggNOG:COG1676
KO:K15322 GO:GO:0000213 SUPFAM:SSF53032 CTD:80746
HOGENOM:HOG000154285 HOVERGEN:HBG056610 OrthoDB:EOG4Z36DM
EMBL:BC087631 IPI:IPI00389624 RefSeq:NP_001014079.1
UniGene:Rn.206216 ProteinModelPortal:Q5M954 STRING:Q5M954
PhosphoSite:Q5M954 PRIDE:Q5M954 GeneID:312649 KEGG:rno:312649
UCSC:RGD:1309946 NextBio:665062 ArrayExpress:Q5M954
Genevestigator:Q5M954 GermOnline:ENSRNOG00000027158 Uniprot:Q5M954
Length = 463
Score = 240 (89.5 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 55/169 (32%), Positives = 84/169 (49%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LWQ A + TF Y AY + R K
Sbjct: 293 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 351
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLR---VWSDIHCTVRLCG 189
WV + G +YG D + YR P H+ Y+V++ +D G LR W + R+ G
Sbjct: 352 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELV-DDNFEGSLRRPFSWKSLAALSRVSG 410
Query: 190 GVAKTLLILTINK----NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K + TP C+ + V+E +SRW + R D
Sbjct: 411 NVSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWVSSRERSD 459
>UNIPROTKB|Q5M954 [details] [associations]
symbol:Tsen2 "tRNA-splicing endonuclease subunit Sen2"
species:10116 "Rattus norvegicus" [GO:0000214 "tRNA-intron
endonuclease complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA]
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778 PIRSF:PIRSF011789
RGD:1309946 GO:GO:0005737 GO:GO:0005813 GO:GO:0005730 GO:GO:0006397
GO:GO:0003676 GO:GO:0090305 GO:GO:0000214 GO:GO:0006388
Gene3D:3.40.1350.10 eggNOG:COG1676 KO:K15322 GO:GO:0000213
SUPFAM:SSF53032 CTD:80746 HOGENOM:HOG000154285 HOVERGEN:HBG056610
OrthoDB:EOG4Z36DM EMBL:BC087631 IPI:IPI00389624
RefSeq:NP_001014079.1 UniGene:Rn.206216 ProteinModelPortal:Q5M954
STRING:Q5M954 PhosphoSite:Q5M954 PRIDE:Q5M954 GeneID:312649
KEGG:rno:312649 UCSC:RGD:1309946 NextBio:665062 ArrayExpress:Q5M954
Genevestigator:Q5M954 GermOnline:ENSRNOG00000027158 Uniprot:Q5M954
Length = 463
Score = 240 (89.5 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 55/169 (32%), Positives = 84/169 (49%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LWQ A + TF Y AY + R K
Sbjct: 293 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 351
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLR---VWSDIHCTVRLCG 189
WV + G +YG D + YR P H+ Y+V++ +D G LR W + R+ G
Sbjct: 352 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELV-DDNFEGSLRRPFSWKSLAALSRVSG 410
Query: 190 GVAKTLLILTINK----NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K + TP C+ + V+E +SRW + R D
Sbjct: 411 NVSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWVSSRERSD 459
>TAIR|locus:1009023257 [details] [associations]
symbol:AT3G45577 species:3702 "Arabidopsis thaliana"
[GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA]
InterPro:IPR006678 Pfam:PF02778 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006388 EMBL:AL138657 KO:K15322
GO:GO:0000213 EMBL:DQ487547 IPI:IPI00657590 RefSeq:NP_001030813.1
UniGene:At.63256 ProteinModelPortal:Q2V3Q6 SMR:Q2V3Q6
EnsemblPlants:AT3G45577.1 GeneID:3769654 KEGG:ath:AT3G45577
TAIR:At3g45577 eggNOG:KOG4685 PhylomeDB:Q2V3Q6
Genevestigator:Q2V3Q6 Uniprot:Q2V3Q6
Length = 118
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 50 AEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQ 109
+EQ ELL+R CFGR + AEKDK+W QL EE F+L + LKC+KI S N +LW+
Sbjct: 36 SEQAELLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKISLHGRSLVNGVDLWR 95
Query: 110 YMKAKKETFPLLYKAYSHLRKKN 132
+++ K F +LYKAYSHLR KN
Sbjct: 96 SIRSFKPNFTILYKAYSHLRSKN 118
>UNIPROTKB|A6H7E5 [details] [associations]
symbol:TSEN2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000214 "tRNA-intron
endonuclease complex" evidence=IEA] [GO:0000213 "tRNA-intron
endonuclease activity" evidence=IEA] InterPro:IPR006677
InterPro:IPR006678 InterPro:IPR011856 InterPro:IPR016589
Pfam:PF01974 Pfam:PF02778 PIRSF:PIRSF011789 GO:GO:0005737
GO:GO:0005813 GO:GO:0003676 GO:GO:0090305 GO:GO:0000214
GO:GO:0006388 Gene3D:3.40.1350.10 UniGene:Bt.3862 eggNOG:COG1676
GO:GO:0000213 SUPFAM:SSF53032 HOGENOM:HOG000154285
HOVERGEN:HBG056610 GeneTree:ENSGT00390000013266 OMA:ERSDQDE
EMBL:DAAA02054586 EMBL:DAAA02054587 EMBL:DAAA02054588 EMBL:BC146215
IPI:IPI00729863 STRING:A6H7E5 Ensembl:ENSBTAT00000044041
Ensembl:ENSBTAT00000044043 InParanoid:A6H7E5 Uniprot:A6H7E5
Length = 459
Score = 226 (84.6 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 54/168 (32%), Positives = 81/168 (48%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LW + TF Y AY H R K
Sbjct: 289 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIMKLWNAFSTVQPTFRTTYMAYHHFRSKG 347
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV-LAEGE-DGENGRLRVWSDIHCTVRLCGG 190
WV + G +YG D + YR P H+ Y+V+V L + G R W + R+
Sbjct: 348 WVPKPGLKYGTDLLLYRKGPPFYHASYSVIVELVDDRFQGAPRRPLSWRSLAALSRVSVS 407
Query: 191 VAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K T +P C++Q V+E +SRW + R D
Sbjct: 408 VSKELMLCYLIKPSTMTDKDMESPECMKQIKVQEVILSRWVSSRERSD 455
>ZFIN|ZDB-GENE-060929-918 [details] [associations]
symbol:tsen2 "tRNA splicing endonuclease 2 homolog
(S. cerevisiae)" species:7955 "Danio rerio" [GO:0000213
"tRNA-intron endonuclease activity" evidence=IEA] [GO:0000214
"tRNA-intron endonuclease complex" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] InterPro:IPR006676
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778 PIRSF:PIRSF011789
ZFIN:ZDB-GENE-060929-918 GO:GO:0003676 GO:GO:0090305 GO:GO:0000214
GO:GO:0006388 Gene3D:3.40.1350.10 KO:K15322 GO:GO:0000213
SUPFAM:SSF53032 CTD:80746 HOVERGEN:HBG056610 TIGRFAMs:TIGR00324
EMBL:BC124530 IPI:IPI00801246 RefSeq:NP_001070119.1
UniGene:Dr.85418 ProteinModelPortal:Q08BW3 PRIDE:Q08BW3
GeneID:767713 KEGG:dre:767713 InParanoid:Q08BW3 NextBio:20918101
Bgee:Q08BW3 Uniprot:Q08BW3
Length = 438
Score = 224 (83.9 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 55/172 (31%), Positives = 86/172 (50%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIV--GEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRK 130
++ QL EE F+L ++L CL I GE S +LW ++ + F Y AY + R
Sbjct: 268 EYLQLSYEEAFFLVYALGCLSIYYNGEALSVA---QLWTMFRSLQPNFCFSYAAYHYYRS 324
Query: 131 KNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRV--WSDIHCTVRLC 188
K WV +SG +YG D + YR P H+ Y+V+V LR W + R
Sbjct: 325 KGWVPKSGVKYGTDLMLYRKGPPFYHASYSVVVDTVDASFRRSSLRPFSWRSLATLSRTT 384
Query: 189 GGVAKTLLILTI----NKNGQGTATPSCLEQYAVEERTISRW--SPEQCRED 234
G V+K L++ I + G +P CL++++V+E +SRW S E+ ++
Sbjct: 385 GNVSKELMLCFIITPSDVTGDLLVSPQCLKRFSVQEVLMSRWVSSKERTEQE 436
>UNIPROTKB|F1NIA3 [details] [associations]
symbol:TSEN2 "tRNA-splicing endonuclease subunit Sen2"
species:9031 "Gallus gallus" [GO:0000213 "tRNA-intron endonuclease
activity" evidence=IEA] [GO:0000214 "tRNA-intron endonuclease
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778 PIRSF:PIRSF011789
GO:GO:0005737 GO:GO:0005813 GO:GO:0003676 GO:GO:0090305
GO:GO:0000214 GO:GO:0006388 Gene3D:3.40.1350.10 GO:GO:0000213
SUPFAM:SSF53032 IPI:IPI00590054 GeneTree:ENSGT00390000013266
OMA:ERSDQDE EMBL:AADN02013930 Ensembl:ENSGALT00000007983
Uniprot:F1NIA3
Length = 461
Score = 223 (83.6 bits), Expect = 8.2e-18, P = 8.2e-18
Identities = 58/173 (33%), Positives = 88/173 (50%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIV-GEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKK 131
++ QL +EE F+L ++L CL + GE+ T +LW+ K +F Y AY + R K
Sbjct: 291 EYLQLSLEEAFFLVYALGCLTVYYGEEPLTIL--KLWEIFSEVKPSFKTTYMAYHYFRSK 348
Query: 132 NWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAE-GEDGENGRLR---VWSDIHCTVRL 187
WV + G +YG D + YR P H+ Y+V+ AE +D G LR W + R
Sbjct: 349 GWVPKVGLKYGTDLLLYRKGPPFYHASYSVI--AELVDDNFEGSLRRPLSWMSLSGLNRT 406
Query: 188 CGGVAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRW--SPEQCRED 234
+K LL+ + K T ATP CL++ V+E ++RW S E+ +D
Sbjct: 407 TVNASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRWVSSRERSEQD 459
>UNIPROTKB|Q5ZIN2 [details] [associations]
symbol:TSEN2 "tRNA-splicing endonuclease subunit Sen2"
species:9031 "Gallus gallus" [GO:0000214 "tRNA-intron endonuclease
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=IEA] [GO:0000213 "tRNA-intron
endonuclease activity" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR006677 InterPro:IPR006678
InterPro:IPR011856 InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778
PIRSF:PIRSF011789 GO:GO:0006397 GO:GO:0003676 GO:GO:0090305
GO:GO:0000214 GO:GO:0006388 Gene3D:3.40.1350.10 eggNOG:COG1676
KO:K15322 GO:GO:0000213 SUPFAM:SSF53032 EMBL:AJ720752
IPI:IPI00590054 RefSeq:NP_001025765.1 UniGene:Gga.22337
ProteinModelPortal:Q5ZIN2 STRING:Q5ZIN2 GeneID:415965
KEGG:gga:415965 CTD:80746 HOGENOM:HOG000154285 HOVERGEN:HBG056610
InParanoid:Q5ZIN2 OrthoDB:EOG4Z36DM NextBio:20819488 Uniprot:Q5ZIN2
Length = 461
Score = 223 (83.6 bits), Expect = 8.2e-18, P = 8.2e-18
Identities = 58/173 (33%), Positives = 88/173 (50%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIV-GEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKK 131
++ QL +EE F+L ++L CL + GE+ T +LW+ K +F Y AY + R K
Sbjct: 291 EYLQLSLEEAFFLVYALGCLTVYYGEEPLTIL--KLWEIFSEVKPSFKTTYMAYHYFRSK 348
Query: 132 NWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAE-GEDGENGRLR---VWSDIHCTVRL 187
WV + G +YG D + YR P H+ Y+V+ AE +D G LR W + R
Sbjct: 349 GWVPKVGLKYGTDLLLYRKGPPFYHASYSVI--AELVDDNFEGSLRRPLSWMSLSGLNRT 406
Query: 188 CGGVAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRW--SPEQCRED 234
+K LL+ + K T ATP CL++ V+E ++RW S E+ +D
Sbjct: 407 TVNASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRWVSSRERSEQD 459
>UNIPROTKB|F1SQ91 [details] [associations]
symbol:TSEN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000214 "tRNA-intron
endonuclease complex" evidence=IEA] [GO:0000213 "tRNA-intron
endonuclease activity" evidence=IEA] InterPro:IPR006676
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778 PIRSF:PIRSF011789
GO:GO:0005737 GO:GO:0005813 GO:GO:0003676 GO:GO:0090305
GO:GO:0000214 GO:GO:0006388 Gene3D:3.40.1350.10 GO:GO:0000213
SUPFAM:SSF53032 GeneTree:ENSGT00390000013266 OMA:ERSDQDE
TIGRFAMs:TIGR00324 EMBL:CU856559 Ensembl:ENSSSCT00000012673
Uniprot:F1SQ91
Length = 465
Score = 221 (82.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 54/169 (31%), Positives = 82/169 (48%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LW + TF Y AY H R K
Sbjct: 295 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIVKLWNAFTRVQPTFRTTYMAYHHFRSKG 353
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLR---VWSDIHCTVRLCG 189
WV + G +YG D + YR P H+ Y+V++ +D G LR W + R+
Sbjct: 354 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELV-DDCFEGTLRRPFSWRSLAALSRVSV 412
Query: 190 GVAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K T +P C++Q V+E +SRW + R D
Sbjct: 413 SVSKELMLCYVIKPSTMTDREMESPECMKQIKVQEVILSRWVSSRERGD 461
>UNIPROTKB|E2RAH2 [details] [associations]
symbol:TSEN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000214 "tRNA-intron endonuclease
complex" evidence=IEA] [GO:0000213 "tRNA-intron endonuclease
activity" evidence=IEA] InterPro:IPR006677 InterPro:IPR006678
InterPro:IPR011856 InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778
PIRSF:PIRSF011789 GO:GO:0003676 GO:GO:0090305 GO:GO:0000214
GO:GO:0006388 Gene3D:3.40.1350.10 KO:K15322 GO:GO:0000213
SUPFAM:SSF53032 CTD:80746 GeneTree:ENSGT00390000013266 OMA:ERSDQDE
EMBL:AAEX03012060 RefSeq:XP_541765.1 Ensembl:ENSCAFT00000008014
GeneID:484651 KEGG:cfa:484651 Uniprot:E2RAH2
Length = 470
Score = 218 (81.8 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 53/169 (31%), Positives = 83/169 (49%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LW+ + TF Y AY + R K
Sbjct: 300 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIMKLWKAFTVVQPTFRTTYMAYHYFRSKG 358
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLR---VWSDIHCTVRLCG 189
WV + G +YG D + YR P H+ Y+V++ +D G LR W + R+
Sbjct: 359 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELV-DDHFEGSLRRPFSWRSLAALNRVSV 417
Query: 190 GVAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K T +P C++Q V+E +SRW + R D
Sbjct: 418 NVSKELMLCYLIKPSTMTDKEMESPECMKQIKVQEVILSRWVSSRERSD 466
>UNIPROTKB|B7Z355 [details] [associations]
symbol:TSEN2 "cDNA FLJ55685, highly similar to
tRNA-splicing endonuclease subunit Sen2 (EC 3.1.27.9)" species:9606
"Homo sapiens" [GO:0000213 "tRNA-intron endonuclease activity"
evidence=IEA] [GO:0000214 "tRNA-intron endonuclease complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR006677 InterPro:IPR006678
InterPro:IPR011856 InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778
PIRSF:PIRSF011789 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0090305 GO:GO:0000214 GO:GO:0006388 EMBL:AC018500
Gene3D:3.40.1350.10 EMBL:AC090947 GO:GO:0000213 SUPFAM:SSF53032
HOVERGEN:HBG056610 UniGene:Hs.335550 HGNC:HGNC:28422 EMBL:AK295508
IPI:IPI00921927 SMR:B7Z355 STRING:B7Z355 Ensembl:ENST00000537959
Uniprot:B7Z355
Length = 438
Score = 217 (81.4 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 51/168 (30%), Positives = 83/168 (49%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LW+ + TF Y AY + R K
Sbjct: 268 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIVKLWKAFTVVQPTFRTTYMAYHYFRSKG 326
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV-LAEGE-DGENGRLRVWSDIHCTVRLCGG 190
WV + G +YG D + YR P H+ Y+V++ L + +G R W + R+
Sbjct: 327 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVN 386
Query: 191 VAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K T +P C+++ V+E +SRW + R D
Sbjct: 387 VSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSD 434
>UNIPROTKB|Q8NCE0 [details] [associations]
symbol:TSEN2 "tRNA-splicing endonuclease subunit Sen2"
species:9606 "Homo sapiens" [GO:0000214 "tRNA-intron endonuclease
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
InterPro:IPR016589 Pfam:PF01974 Pfam:PF02778 PIRSF:PIRSF011789
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0006397
GO:GO:0003676 GO:GO:0090305 GO:GO:0000214 GO:GO:0006388
Gene3D:3.40.1350.10 eggNOG:COG1676 KO:K15322 GO:GO:0000213
SUPFAM:SSF53032 CTD:80746 HOGENOM:HOG000154285 HOVERGEN:HBG056610
EMBL:AK074794 EMBL:BC004178 EMBL:BC004211 EMBL:BC019582
EMBL:BC021975 IPI:IPI00427037 IPI:IPI00427039 IPI:IPI00427040
RefSeq:NP_001138864.1 RefSeq:NP_001138865.1 RefSeq:NP_079541.1
UniGene:Hs.335550 ProteinModelPortal:Q8NCE0 SMR:Q8NCE0
IntAct:Q8NCE0 STRING:Q8NCE0 PhosphoSite:Q8NCE0 DMDM:50428914
PaxDb:Q8NCE0 PRIDE:Q8NCE0 DNASU:80746 Ensembl:ENST00000284995
Ensembl:ENST00000314571 Ensembl:ENST00000383797
Ensembl:ENST00000402228 Ensembl:ENST00000415684 GeneID:80746
KEGG:hsa:80746 UCSC:uc003bxa.3 UCSC:uc003bxb.3
GeneCards:GC03P012504 HGNC:HGNC:28422 HPA:HPA027120 HPA:HPA027125
HPA:HPA027268 MIM:608753 MIM:612389 neXtProt:NX_Q8NCE0
Orphanet:2524 PharmGKB:PA142670695 InParanoid:Q8NCE0
PhylomeDB:Q8NCE0 GenomeRNAi:80746 NextBio:71098 ArrayExpress:Q8NCE0
Bgee:Q8NCE0 CleanEx:HS_TSEN2 Genevestigator:Q8NCE0
GermOnline:ENSG00000154743 Uniprot:Q8NCE0
Length = 465
Score = 217 (81.4 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 51/168 (30%), Positives = 83/168 (49%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LW+ + TF Y AY + R K
Sbjct: 295 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIVKLWKAFTVVQPTFRTTYMAYHYFRSKG 353
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV-LAEGE-DGENGRLRVWSDIHCTVRLCGG 190
WV + G +YG D + YR P H+ Y+V++ L + +G R W + R+
Sbjct: 354 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVN 413
Query: 191 VAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K T +P C+++ V+E +SRW + R D
Sbjct: 414 VSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSD 461
>FB|FBgn0051812 [details] [associations]
symbol:CG31812 species:7227 "Drosophila melanogaster"
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] [GO:0000213 "tRNA-intron endonuclease
activity" evidence=ISS] [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006677 InterPro:IPR006678
InterPro:IPR011856 Pfam:PF01974 Pfam:PF02778 EMBL:AE014134
GO:GO:0003676 GO:GO:0090305 GO:GO:0006388 Gene3D:3.40.1350.10
KO:K15322 GO:GO:0000213 SUPFAM:SSF53032
GeneTree:ENSGT00390000013266 RefSeq:NP_723994.2
ProteinModelPortal:Q8IP11 SMR:Q8IP11 EnsemblMetazoa:FBtr0290062
GeneID:318956 KEGG:dme:Dmel_CG31812 UCSC:CG31812-RB
FlyBase:FBgn0051812 InParanoid:Q8IP11 OMA:WVIKSGI OrthoDB:EOG4F7M1Q
PhylomeDB:Q8IP11 GenomeRNAi:318956 NextBio:846733
ArrayExpress:Q8IP11 Bgee:Q8IP11 Uniprot:Q8IP11
Length = 233
Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 50/186 (26%), Positives = 90/186 (48%)
Query: 48 VEAEQTELLN-RACFGRHIVT----AEKDK-QWYQLGMEEGFYLCHSLKCLKIVGEDNST 101
V+ EQ + L+ CFG+ + A D+ + LGMEE +L H L L I
Sbjct: 43 VDPEQAKSLHDNGCFGKGSKSRGGPASGDENETLFLGMEESCFLAHYLNVLDITNSAGYL 102
Query: 102 KNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAV 161
+ + K E F +Y +L+ KNWV++SG ++G DF+ Y+ P L H+ + V
Sbjct: 103 MDFCMFVEVAKEHNEKFVENLASYVYLKSKNWVIKSGIKFGGDFLIYKQSPRLYHASFLV 162
Query: 162 LVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEER 221
+V G D ++ + + + R+ K +L+LT+ + +++ L++ V E
Sbjct: 163 IVQKPG-DTDHYQSKNLKGVQ---RVAETSDKDVLLLTVQPPKKISSSRD-LQEATVTET 217
Query: 222 TISRWS 227
+ R++
Sbjct: 218 IVRRFN 223
>DICTYBASE|DDB_G0282855 [details] [associations]
symbol:DDB_G0282855 "tRNA-splicing endonuclease
subunit Sen2" species:44689 "Dictyostelium discoideum" [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA]
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
Pfam:PF01974 Pfam:PF02778 dictyBase:DDB_G0282855 EMBL:AAFI02000047
GO:GO:0003676 GO:GO:0090305 GO:GO:0006388 Gene3D:3.40.1350.10
eggNOG:COG1676 KO:K15322 GO:GO:0000213 SUPFAM:SSF53032
RefSeq:XP_639362.1 ProteinModelPortal:Q54RX5
EnsemblProtists:DDB0204993 GeneID:8623802 KEGG:ddi:DDB_G0282855
InParanoid:Q54RX5 OMA:SLCEAFY Uniprot:Q54RX5
Length = 432
Score = 128 (50.1 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 106 ELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLA 165
E W+ + + +F Y Y + R W+ RSG +YG D++ Y+ P L+H++Y +++
Sbjct: 248 ECWKEFQTIESSFISKYITYHYFRSLGWIPRSGIKYGCDYILYKLKPDLIHAQYGIIIQN 307
Query: 166 EGEDGEN 172
E N
Sbjct: 308 RNEQSTN 314
Score = 64 (27.6 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNST 101
++ QL + E FYL +SL CL I+ NS+
Sbjct: 197 EYLQLSLCEAFYLIYSLGCLTILRRPNSS 225
Score = 39 (18.8 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 168 EDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINK 202
E N ++ W ++ R+ VAK +++ I K
Sbjct: 335 ESSGNRIIQSWDELSGINRVSESVAKGIIVFNIFK 369
Score = 36 (17.7 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 213 LEQYAVEERTISRWSPEQCR 232
L Y V + RW P + R
Sbjct: 412 LSDYKVNMWELKRWIPNRTR 431
>UNIPROTKB|J9P3E0 [details] [associations]
symbol:TSEN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000213 "tRNA-intron endonuclease
activity" evidence=IEA] InterPro:IPR006677 InterPro:IPR006678
InterPro:IPR011856 Pfam:PF01974 Pfam:PF02778 GO:GO:0003676
GO:GO:0090305 GO:GO:0006388 Gene3D:3.40.1350.10 GO:GO:0000213
SUPFAM:SSF53032 GeneTree:ENSGT00390000013266 EMBL:AAEX03012060
Ensembl:ENSCAFT00000043380 Uniprot:J9P3E0
Length = 410
Score = 157 (60.3 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 41/124 (33%), Positives = 59/124 (47%)
Query: 80 EEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGS 139
EE F+L ++L CL I E +LW+ + TF Y AY + R K WV + G
Sbjct: 281 EEAFFLVYALGCLSIYYEKEPL-TIMKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 339
Query: 140 QYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLR---VWSDIHCTVRLCGGVAK-TL 195
+YG D + YR P H+ Y+V++ +D G LR W + R+ V+K T
Sbjct: 340 KYGTDLLLYRKGPPFYHASYSVIIELV-DDHFEGSLRRPFSWRSLAALNRVSVNVSKVTT 398
Query: 196 LILT 199
LT
Sbjct: 399 SALT 402
>UNIPROTKB|I3LE08 [details] [associations]
symbol:TSEN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006388 "tRNA splicing, via endonucleolytic cleavage
and ligation" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000213 "tRNA-intron endonuclease activity"
evidence=IEA] InterPro:IPR006677 InterPro:IPR011856 Pfam:PF01974
GO:GO:0003676 GO:GO:0090305 GO:GO:0006388 Gene3D:3.40.1350.10
GO:GO:0000213 SUPFAM:SSF53032 GeneTree:ENSGT00390000013266
EMBL:CU856559 Ensembl:ENSSSCT00000029848 Uniprot:I3LE08
Length = 400
Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 37/116 (31%), Positives = 54/116 (46%)
Query: 81 EGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQ 140
+ F+L ++L CL I E +LW + TF Y AY H R K WV + G +
Sbjct: 275 DAFFLVYALGCLSIYYEKEPL-TIVKLWNAFTRVQPTFRTTYMAYHHFRSKGWVPKVGLK 333
Query: 141 YGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLR---VWSDIHCTVRLCGGVAK 193
YG D + YR P H+ Y+V++ +D G LR W + R+ V+K
Sbjct: 334 YGTDLLLYRKGPPFYHASYSVIIELV-DDCFEGTLRRPFSWRSLAALSRVSVSVSK 388
>POMBASE|SPAPB17E12.07c [details] [associations]
symbol:sen2 "tRNA-splicing endonuclease subunit
catalytic subunit Sen2 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000213 "tRNA-intron endonuclease
activity" evidence=ISO] [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISO] [GO:0000379 "tRNA-type intron splice site
recognition and cleavage" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=ISO] InterPro:IPR006677 InterPro:IPR011856
InterPro:IPR016589 Pfam:PF01974 PIRSF:PIRSF011789
PomBase:SPAPB17E12.07c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005741 GO:GO:0003676 GO:GO:0000214 Gene3D:3.40.1350.10
GO:GO:0000379 eggNOG:COG1676 KO:K15322 GO:GO:0000213
SUPFAM:SSF53032 RefSeq:NP_001018222.1 ProteinModelPortal:Q8TFH7
STRING:Q8TFH7 EnsemblFungi:SPAPB17E12.07c.1 GeneID:3361398
KEGG:spo:SPAPB17E12.07c HOGENOM:HOG000159660 OMA:CVRSGIK
OrthoDB:EOG4PCF2K NextBio:20811448 Uniprot:Q8TFH7
Length = 380
Score = 149 (57.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 35/125 (28%), Positives = 67/125 (53%)
Query: 124 AYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHC 183
AY + R++ WVV++G+++ VDF+ Y+ P H+E+A+L++ + + ++ W ++HC
Sbjct: 257 AYFYFRQQGWVVKNGTKFSVDFLLYKKGPVFSHAEFAILLIPCVGNKQKYNMQ-WHEVHC 315
Query: 184 TVRLCGGVAKTLLILTI--------NKNGQGTAT-------PSCLEQYAVEERTISRWSP 228
R+ V K+L++ + NK + A+ S L QY + T+ RW P
Sbjct: 316 LNRVIAQVKKSLILCYVQCPSIEDFNKIWKNQASMNEWDWAESVLRQYLIRCVTLRRWVP 375
Query: 229 EQCRE 233
+ R+
Sbjct: 376 SRNRD 380
>UNIPROTKB|C9J7Z4 [details] [associations]
symbol:TSEN2 "tRNA-splicing endonuclease subunit Sen2"
species:9606 "Homo sapiens" [GO:0000213 "tRNA-intron endonuclease
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR006677 InterPro:IPR006678 InterPro:IPR011856
Pfam:PF01974 Pfam:PF02778 GO:GO:0005634 GO:GO:0005737 GO:GO:0005813
GO:GO:0003676 GO:GO:0090305 GO:GO:0006388 EMBL:AC018500
Gene3D:3.40.1350.10 EMBL:AC090947 GO:GO:0000213 SUPFAM:SSF53032
HOGENOM:HOG000154285 OrthoDB:EOG4Z36DM HGNC:HGNC:28422
IPI:IPI00926919 ProteinModelPortal:C9J7Z4 SMR:C9J7Z4 STRING:C9J7Z4
Ensembl:ENST00000446004 ArrayExpress:C9J7Z4 Bgee:C9J7Z4
Uniprot:C9J7Z4
Length = 378
Score = 148 (57.2 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LW+ + TF Y AY + R K
Sbjct: 295 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIVKLWKAFTVVQPTFRTTYMAYHYFRSKG 353
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHS 157
WV + G +YG D + YR P H+
Sbjct: 354 WVPKVGLKYGTDLLLYRKGPPFYHA 378
>CGD|CAL0004215 [details] [associations]
symbol:SEN2 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0000213 "tRNA-intron
endonuclease activity" evidence=IEA] [GO:0000214 "tRNA-intron
endonuclease complex" evidence=IEA] [GO:0005741 "mitochondrial
outer membrane" evidence=IEA] [GO:0000379 "tRNA-type intron splice
site recognition and cleavage" evidence=IEA] InterPro:IPR006676
InterPro:IPR006677 InterPro:IPR011856 InterPro:IPR016589
Pfam:PF01974 PIRSF:PIRSF011789 CGD:CAL0004215 GO:GO:0003676
GO:GO:0035690 GO:GO:0090305 EMBL:AACQ01000023 EMBL:AACQ01000025
GO:GO:0000214 GO:GO:0006388 Gene3D:3.40.1350.10 eggNOG:COG1676
KO:K15322 GO:GO:0000213 SUPFAM:SSF53032 HOGENOM:HOG000159660
TIGRFAMs:TIGR00324 RefSeq:XP_720254.1 RefSeq:XP_720485.1
ProteinModelPortal:Q5AF73 STRING:Q5AF73 GeneID:3637832
GeneID:3638143 KEGG:cal:CaO19.10249 KEGG:cal:CaO19.2735
Uniprot:Q5AF73
Length = 389
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 45/183 (24%), Positives = 75/183 (40%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKN-----DDELWQYMKAKKETFPLLYKAYSH 127
++ QL E F+L +L+ + IV D+ + + F + Y AY +
Sbjct: 213 EFLQLQEVETFFLKFALQRIDIVNVDSLLDLFYKCCSHHSFSPIPTSNNQFIIEYIAYHY 272
Query: 128 LRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRL 187
R W VRSG ++G DF+ Y+ P H+E+ VLV+ + + W I R+
Sbjct: 273 FRTNGWCVRSGIKFGTDFLLYKRGPPFTHAEFCVLVMTKDSKYD------WFQIAAKARV 326
Query: 188 CGGVAKTLLILTIN-------------KNGQ----GTATPSCLEQYAVEERTISRWSPEQ 230
G V K ++ I +N + G L +Y + E RW+P +
Sbjct: 327 IGSVKKAFVLCYIEYPTQEEFDQILQKQNEEDIDHGLLLKELLSKYKISEVIYKRWNPSR 386
Query: 231 CRE 233
R+
Sbjct: 387 TRD 389
>UNIPROTKB|Q5AF73 [details] [associations]
symbol:SEN2 "Potential tRNA splicing endonuclease subunit"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR006676
InterPro:IPR006677 InterPro:IPR011856 InterPro:IPR016589
Pfam:PF01974 PIRSF:PIRSF011789 CGD:CAL0004215 GO:GO:0003676
GO:GO:0035690 GO:GO:0090305 EMBL:AACQ01000023 EMBL:AACQ01000025
GO:GO:0000214 GO:GO:0006388 Gene3D:3.40.1350.10 eggNOG:COG1676
KO:K15322 GO:GO:0000213 SUPFAM:SSF53032 HOGENOM:HOG000159660
TIGRFAMs:TIGR00324 RefSeq:XP_720254.1 RefSeq:XP_720485.1
ProteinModelPortal:Q5AF73 STRING:Q5AF73 GeneID:3637832
GeneID:3638143 KEGG:cal:CaO19.10249 KEGG:cal:CaO19.2735
Uniprot:Q5AF73
Length = 389
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 45/183 (24%), Positives = 75/183 (40%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKN-----DDELWQYMKAKKETFPLLYKAYSH 127
++ QL E F+L +L+ + IV D+ + + F + Y AY +
Sbjct: 213 EFLQLQEVETFFLKFALQRIDIVNVDSLLDLFYKCCSHHSFSPIPTSNNQFIIEYIAYHY 272
Query: 128 LRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRL 187
R W VRSG ++G DF+ Y+ P H+E+ VLV+ + + W I R+
Sbjct: 273 FRTNGWCVRSGIKFGTDFLLYKRGPPFTHAEFCVLVMTKDSKYD------WFQIAAKARV 326
Query: 188 CGGVAKTLLILTIN-------------KNGQ----GTATPSCLEQYAVEERTISRWSPEQ 230
G V K ++ I +N + G L +Y + E RW+P +
Sbjct: 327 IGSVKKAFVLCYIEYPTQEEFDQILQKQNEEDIDHGLLLKELLSKYKISEVIYKRWNPSR 386
Query: 231 CRE 233
R+
Sbjct: 387 TRD 389
>ASPGD|ASPL0000097796 [details] [associations]
symbol:AN12203 species:162425 "Emericella nidulans"
[GO:0000379 "tRNA-type intron splice site recognition and cleavage"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA]
[GO:0005741 "mitochondrial outer membrane" evidence=IEA]
[GO:0000213 "tRNA-intron endonuclease activity" evidence=IEA]
InterPro:IPR006677 InterPro:IPR011856 Pfam:PF01974
InterPro:IPR001357 Pfam:PF00533 GO:GO:0003676 EMBL:BN001302
GO:GO:0090305 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:AACD01000145 GO:GO:0006388 Gene3D:3.40.1350.10
InterPro:IPR013914 Pfam:PF08605 OrthoDB:EOG4FXVHQ eggNOG:COG1676
KO:K15322 GO:GO:0000213 SUPFAM:SSF53032 RefSeq:XP_681524.1
ProteinModelPortal:Q5ATX5 EnsemblFungi:CADANIAT00004313
GeneID:2869026 KEGG:ani:AN8255.2 HOGENOM:HOG000159649 OMA:ERRKAYI
Uniprot:Q5ATX5
Length = 1851
Score = 137 (53.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 55/175 (31%), Positives = 78/175 (44%)
Query: 50 AEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTK-NDDELW 108
A++T + R G +T E+ QL EE F+L + L L I D T + L
Sbjct: 237 ADRTVINLRDPSGELAITNEEH---LQLSNEEAFFLVYGLGALHIFDHDLKTVLSPTSLL 293
Query: 109 Q------YMKAK------KETFPLL--YKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSL 154
+ Y + K P L Y Y H R WVVRSG ++GVD++ Y P
Sbjct: 294 RTLCHHSYSPPRDLSMDLKTDDPFLVSYVVYHHFRSLGWVVRSGVKFGVDYLLYYRGPVF 353
Query: 155 VHSEYAVLVL--------AEGED--GENGRL--RVWSDIHCTVRLCGGVAKTLLI 197
H+E+AV+V+ +E +D E R R W HC R+ V KTL++
Sbjct: 354 SHAEFAVVVIPSYDHPYWSETKDRKAECARKQSRSWWWFHCVNRVQAQVKKTLVV 408
Score = 36 (17.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 224 SRWSPEQCREDPA 236
S+WSPE+ PA
Sbjct: 961 SQWSPERDDVKPA 973
>ASPGD|ASPL0000093047 [details] [associations]
symbol:AN12204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006677 InterPro:IPR011856 Pfam:PF01974
InterPro:IPR001357 Pfam:PF00533 GO:GO:0003676 EMBL:BN001302
GO:GO:0090305 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:AACD01000145 GO:GO:0006388 Gene3D:3.40.1350.10
InterPro:IPR013914 Pfam:PF08605 OrthoDB:EOG4FXVHQ eggNOG:COG1676
KO:K15322 GO:GO:0000213 SUPFAM:SSF53032 RefSeq:XP_681524.1
ProteinModelPortal:Q5ATX5 EnsemblFungi:CADANIAT00004313
GeneID:2869026 KEGG:ani:AN8255.2 HOGENOM:HOG000159649 OMA:ERRKAYI
Uniprot:Q5ATX5
Length = 1851
Score = 137 (53.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 55/175 (31%), Positives = 78/175 (44%)
Query: 50 AEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTK-NDDELW 108
A++T + R G +T E+ QL EE F+L + L L I D T + L
Sbjct: 237 ADRTVINLRDPSGELAITNEEH---LQLSNEEAFFLVYGLGALHIFDHDLKTVLSPTSLL 293
Query: 109 Q------YMKAK------KETFPLL--YKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSL 154
+ Y + K P L Y Y H R WVVRSG ++GVD++ Y P
Sbjct: 294 RTLCHHSYSPPRDLSMDLKTDDPFLVSYVVYHHFRSLGWVVRSGVKFGVDYLLYYRGPVF 353
Query: 155 VHSEYAVLVL--------AEGED--GENGRL--RVWSDIHCTVRLCGGVAKTLLI 197
H+E+AV+V+ +E +D E R R W HC R+ V KTL++
Sbjct: 354 SHAEFAVVVIPSYDHPYWSETKDRKAECARKQSRSWWWFHCVNRVQAQVKKTLVV 408
Score = 36 (17.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 224 SRWSPEQCREDPA 236
S+WSPE+ PA
Sbjct: 961 SQWSPERDDVKPA 973
>SGD|S000004095 [details] [associations]
symbol:SEN2 "Subunit of the tRNA splicing endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0012505 "endomembrane system" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA;IMP;IDA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0000213
"tRNA-intron endonuclease activity" evidence=IEA;IMP;IDA]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0000379 "tRNA-type intron splice site recognition and cleavage"
evidence=IMP;IDA] InterPro:IPR006676 InterPro:IPR006677
InterPro:IPR011856 InterPro:IPR016589 Pfam:PF01974
PIRSF:PIRSF011789 SGD:S000004095 GO:GO:0005741 GO:GO:0012505
GO:GO:0003676 EMBL:BK006945 EMBL:U53876 GO:GO:0000214
Gene3D:3.40.1350.10 GO:GO:0000379 eggNOG:COG1676 KO:K15322
GO:GO:0000213 SUPFAM:SSF53032 GeneTree:ENSGT00390000013266
HOGENOM:HOG000159660 OMA:CVRSGIK OrthoDB:EOG4PCF2K EMBL:M32336
EMBL:Z73277 PIR:A38862 RefSeq:NP_013206.1 ProteinModelPortal:P16658
SMR:P16658 DIP:DIP-4821N IntAct:P16658 MINT:MINT-546309
STRING:P16658 PaxDb:P16658 EnsemblFungi:YLR105C GeneID:850795
KEGG:sce:YLR105C CYGD:YLR105c BioCyc:MetaCyc:MONOMER-16148
NextBio:967008 Genevestigator:P16658 GermOnline:YLR105C
TIGRFAMs:TIGR00324 Uniprot:P16658
Length = 377
Score = 119 (46.9 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 106 ELWQYMKAKKE--TFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV 163
+L+Q+ K+ +F Y Y H R W VRSG ++G D++ Y+ P H+E+ V+
Sbjct: 245 KLFQFDAKYKDIHSFVRSYVIYHHYRSHGWCVRSGIKFGCDYLLYKRGPPFQHAEFCVM- 303
Query: 164 LAEGEDGENGRLRVW-SDIHCTVRLCGGVAKTLLILTINK 202
G D + + W S I R+ GG KT ++ + +
Sbjct: 304 ---GLDHDVSKDYTWYSSI---ARVVGGAKKTFVLCYVER 337
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 243 243 0.00097 113 3 11 22 0.44 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 616 (65 KB)
Total size of DFA: 221 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.00u 0.09s 21.09t Elapsed: 00:00:01
Total cpu time: 21.00u 0.09s 21.09t Elapsed: 00:00:01
Start: Fri May 10 19:38:38 2013 End: Fri May 10 19:38:39 2013