BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043831
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSS3|SEN22_ARATH tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana
GN=SEN2 PE=2 SV=1
Length = 250
Score = 264 bits (674), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 6/239 (2%)
Query: 1 MGPRWKGRASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNRAC 60
M PRWK + +EAK+ ++ ++E+ L+ + LLAVE EQ ELL+R C
Sbjct: 1 MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60
Query: 61 FGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL 120
FGR +++AEK K+W QL EE F+L ++LKC+KI + +N+ + W YMK+K+ FP+
Sbjct: 61 FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120
Query: 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSD 180
+KAYSHLR KNWV+RSG QYGVDFVAYRHHPSLVHSEY+VLV + G++ RLRVWSD
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV----QSGDSDRLRVWSD 176
Query: 181 IHCTVRLCGGVAKTLLILTINKN--GQGTATPSCLEQYAVEERTISRWSPEQCREDPAT 237
IHC VRL G VAKTLL L +N N G+ CLE + VEE+TISRWSPE RED +T
Sbjct: 177 IHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 235
>sp|Q9M1E8|SEN21_ARATH tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana
GN=SEN1 PE=2 SV=1
Length = 237
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/238 (55%), Positives = 167/238 (70%), Gaps = 9/238 (3%)
Query: 1 MGPRWKGRASEAKSSGR--SHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTELLNR 58
M PRWK + +EAK+ S + LR + Q+EA L+ + LL+VE+E+ ELL+R
Sbjct: 1 MAPRWKWKGAEAKALAEPVSKTVSELRSSL--TQTEALGFLSSCNVLLSVESEEAELLDR 58
Query: 59 ACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118
CFGR +V AEKDK+W QL EE F+L + LKC+KI S +N+ +LW+ M + K+ F
Sbjct: 59 CCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSFKQDF 118
Query: 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVW 178
+LYKAYSHLR KNW+VRSG QYGVDFV YRHHPSLVHSEYAVLV + G N RL+VW
Sbjct: 119 AILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQS---IGGNDRLKVW 175
Query: 179 SDIHCTVRLCGGVAKTLLILTINK--NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
SDIHC+VRL G VAK+LL+L +N+ N + P CLE Y VEE+TI RWSPE RED
Sbjct: 176 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233
>sp|Q5Z6B1|SEN2_ORYSJ Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa
subsp. japonica GN=Os06g0530700 PE=2 SV=1
Length = 293
Score = 237 bits (605), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 161/241 (66%), Gaps = 9/241 (3%)
Query: 2 GPRWK----GR--ASEAKSSGRSHVQNHLRFTFLSIQSEAHAVLAGYSALLAVEAEQTEL 55
GPRWK G+ AS A ++ S + + L+ +F+S + A G SA+L V EQ +
Sbjct: 5 GPRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQAVI 64
Query: 56 LNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKK 115
LNRA FG I A K W+QL EE FYLCH+L C+++ DN ++ ELW Y ++
Sbjct: 65 LNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVDSLDNKQMSEIELWDYFRSGS 124
Query: 116 ETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGEN--G 173
E+FP +YKAY+HLR KNWVVRSG QYG DFVAYRHHP+LVHSE+AV+V+ EG + N G
Sbjct: 125 ESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCG 184
Query: 174 RLRVWSDIHCTVRLCGGVAKTLLILTI-NKNGQGTATPSCLEQYAVEERTISRWSPEQCR 232
RL VWSD+ C +R G VAKTLL+LTI + + ++P CLEQ V ERTI+RW +QCR
Sbjct: 185 RLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCR 244
Query: 233 E 233
E
Sbjct: 245 E 245
>sp|Q6P7W5|SEN2_MOUSE tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus GN=Tsen2
PE=1 SV=1
Length = 460
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 7/168 (4%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LWQ A + TF Y AY + R K
Sbjct: 290 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 348
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV--LAEGEDGENGRLRVWSDIHCTVRLCGG 190
WV + G +YG D + YR P H+ Y+V++ L + +G R W + R+ G
Sbjct: 349 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELLDDNYEGSLRRPFSWKSLAALSRVSGN 408
Query: 191 VAKTLLILTINKNGQGTA----TPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K TA TP C+++ V+E +SRW + R D
Sbjct: 409 VSKELMLCYLIKPSTMTAEDMETPECMKRIQVQEVILSRWVSSRERSD 456
>sp|Q5M954|SEN2_RAT tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus
GN=Tsen2 PE=2 SV=1
Length = 463
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 7/168 (4%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LWQ A + TF Y AY + R K
Sbjct: 293 EYLQLSLEEAFFLAYALGCLSIYYEKEPL-TIVKLWQAFTAVQPTFRTTYMAYHYFRSKG 351
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV--LAEGEDGENGRLRVWSDIHCTVRLCGG 190
WV + G +YG D + YR P H+ Y+V++ + + +G R W + R+ G
Sbjct: 352 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDNFEGSLRRPFSWKSLAALSRVSGN 411
Query: 191 VAKTLLILTINK----NGQGTATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K + TP C+ + V+E +SRW + R D
Sbjct: 412 VSKELMLCYLIKPSTMTNEDMETPECMRRIQVQEVILSRWVSSRERSD 459
>sp|Q8NCE0|SEN2_HUMAN tRNA-splicing endonuclease subunit Sen2 OS=Homo sapiens GN=TSEN2
PE=2 SV=2
Length = 465
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
++ QL +EE F+L ++L CL I E +LW+ + TF Y AY + R K
Sbjct: 295 EYLQLSLEEAFFLVYALGCLSIYYEKEPL-TIVKLWKAFTVVQPTFRTTYMAYHYFRSKG 353
Query: 133 WVVRSGSQYGVDFVAYRHHPSLVHSEYAVLV--LAEGEDGENGRLRVWSDIHCTVRLCGG 190
WV + G +YG D + YR P H+ Y+V++ + + +G R W + R+
Sbjct: 354 WVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVN 413
Query: 191 VAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRWSPEQCRED 234
V+K L++ + K T +P C+++ V+E +SRW + R D
Sbjct: 414 VSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSD 461
>sp|Q5ZIN2|SEN2_CHICK tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus GN=TSEN2
PE=2 SV=1
Length = 461
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIV-GEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKK 131
++ QL +EE F+L ++L CL + GE+ T +LW+ K +F Y AY + R K
Sbjct: 291 EYLQLSLEEAFFLVYALGCLTVYYGEEPLTIL--KLWEIFSEVKPSFKTTYMAYHYFRSK 348
Query: 132 NWVVRSGSQYGVDFVAYRHHPSLVHSEYAVL--VLAEGEDGENGRLRVWSDIHCTVRLCG 189
WV + G +YG D + YR P H+ Y+V+ ++ + +G R W + R
Sbjct: 349 GWVPKVGLKYGTDLLLYRKGPPFYHASYSVIAELVDDNFEGSLRRPLSWMSLSGLNRTTV 408
Query: 190 GVAKTLLILTINKNGQGT----ATPSCLEQYAVEERTISRW 226
+K LL+ + K T ATP CL++ V+E ++RW
Sbjct: 409 NASKELLLCYLIKPSDMTEEEMATPECLKRIKVQELIVTRW 449
>sp|Q8TFH7|SEN2_SCHPO Probable tRNA-splicing endonuclease subunit sen2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen2 PE=3 SV=1
Length = 380
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 16/125 (12%)
Query: 124 AYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHC 183
AY + R++ WVV++G+++ VDF+ Y+ P H+E+A+L++ + + ++ W ++HC
Sbjct: 257 AYFYFRQQGWVVKNGTKFSVDFLLYKKGPVFSHAEFAILLIPCVGNKQKYNMQ-WHEVHC 315
Query: 184 TVRLCGGVAKTLLILTI--------NKNGQGTAT-------PSCLEQYAVEERTISRWSP 228
R+ V K+L++ + NK + A+ S L QY + T+ RW P
Sbjct: 316 LNRVIAQVKKSLILCYVQCPSIEDFNKIWKNQASMNEWDWAESVLRQYLIRCVTLRRWVP 375
Query: 229 EQCRE 233
+ R+
Sbjct: 376 SRNRD 380
>sp|Q74ZY5|SEN2_ASHGO tRNA-splicing endonuclease subunit SEN2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SEN2 PE=3 SV=2
Length = 356
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSD 180
LY AY H R W VRSG ++G DF+ YR P H+E++V+VLA E + ++
Sbjct: 241 LYAAYHHYRSHGWCVRSGIKFGCDFLLYRRGPPFHHAEFSVMVLAPDERHD------YTW 294
Query: 181 IHCTVRLCGGVAKTLLILTINKNGQGTATPSC------LEQYA---VEERTISRWSPEQC 231
R+ GG KTL++ + + + +E +A V E RW P +
Sbjct: 295 YSTVARVVGGAQKTLVLAYVARRAAADQLAALWHARRYMEAFALFEVHELVYRRWLPGKN 354
Query: 232 RE 233
RE
Sbjct: 355 RE 356
>sp|Q9P6Y2|SEN2_NEUCR Probable tRNA-splicing endonuclease subunit sen-2 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=sen-2 PE=3 SV=1
Length = 633
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 71 DKQWYQLGMEEGFYLCHSLKCLKIVGE-DNSTKNDDELWQYMKA-------------KKE 116
DK+ +QL EE F+L L L++V + ++++L ++A ++
Sbjct: 444 DKEHFQLAPEEAFFLTFGLGALRVVDPVTEAPISNEQLLIKLRANSYFPPRSVDNLSPED 503
Query: 117 TFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRL- 175
F + Y Y H R WV R G ++GVD++ Y+ P HSE+ ++V+ D
Sbjct: 504 PFLVQYAVYHHFRSLGWVPRHGIKFGVDWIIYQRGPVFDHSEFGIMVVPSFSDPRWSEFE 563
Query: 176 -----RVWSDIHCTVRLCGGVAKTL 195
+ WS + R+ V K+L
Sbjct: 564 HEESKKTWSWLMGVNRVLSHVLKSL 588
>sp|C3N746|ENDA_SULIY tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=endA PE=3 SV=1
Length = 182
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 37 AVLAGYSALLAVEAEQTELLNRACFGRHI-VTAEKDKQ----WYQLGMEEGFYLCHSLKC 91
A+L G L+ E + + +G+ I ++ KD + +L + E YL
Sbjct: 4 ALLVGSKVLIPNVDESRYIYSNGFYGKAIGISKPKDPKDIIRPLELSLIESVYLAKK-GL 62
Query: 92 LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
+K++ ++ ++L++Y F ++Y+ Y LR+K ++VRSG +YG DF Y
Sbjct: 63 IKVIDKNGEVLEYEKLYEYSSKIINKFDIMYRVYEDLREKGFIVRSGVKYGADFAVYTLG 122
Query: 152 PSLVHSEYAVLVLAEGED 169
P L H+ Y V+ + E+
Sbjct: 123 PGLEHAPYVVIAVDIDEE 140
>sp|C3MQX7|ENDA_SULIL tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=endA PE=3 SV=1
Length = 182
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 37 AVLAGYSALLAVEAEQTELLNRACFGRHI-VTAEKDKQ----WYQLGMEEGFYLCHSLKC 91
A+L G L+ E + + +G+ I ++ KD + +L + E YL
Sbjct: 4 ALLVGSKVLIPNVDESRYIYSNGFYGKAIGISKPKDPKDIIRPLELSLIESVYLAKK-GL 62
Query: 92 LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
+K++ ++ ++L++Y F ++Y+ Y LR+K ++VRSG +YG DF Y
Sbjct: 63 IKVIDKNGEVLEYEKLYEYSSKIINKFDIMYRVYEDLREKGFIVRSGVKYGADFAVYTLG 122
Query: 152 PSLVHSEYAVLVLAEGED 169
P L H+ Y V+ + E+
Sbjct: 123 PGLEHAPYVVIAVDIDEE 140
>sp|Q97ZY3|ENDA_SULSO tRNA-splicing endonuclease OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=endA PE=3 SV=1
Length = 182
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 37 AVLAGYSALLAVEAEQTELLNRACFGRHIVTAE----KD-KQWYQLGMEEGFYLCHSLKC 91
A+L G L+ E L + +G+ I ++ KD + +L + E YL
Sbjct: 4 ALLVGSKVLVPSIDESRYLYSNGFYGKPIGISKPKGPKDIVRPLELSLIESVYLTKK-GL 62
Query: 92 LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
+ +V ++ +L++Y K F +LYK Y LR+K ++VRSG +YG DF Y
Sbjct: 63 INVVDKNGDLLEYKKLYEYSAMKINKFEILYKVYEDLREKGFIVRSGVKYGADFAVYTLG 122
Query: 152 PSLVHSEYAVLVLAEGED 169
P L H+ Y V+ + E+
Sbjct: 123 PGLEHAPYVVIAVDIDEE 140
>sp|C3NGJ0|ENDA_SULIN tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=endA PE=3 SV=1
Length = 182
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 37 AVLAGYSALLAVEAEQTELLNRACFGRHI-VTAEKDKQ----WYQLGMEEGFYLCHSLKC 91
A+L G L+ E + + +G+ + ++ KD + +L + E YL
Sbjct: 4 ALLVGSKVLIPNVDESRYIYSNGFYGKAVGISKPKDPKDIIRPLELSLIESVYLAKK-GL 62
Query: 92 LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
+K++ ++ ++L++Y F ++Y+ Y LR+K ++VRSG +YG DF Y
Sbjct: 63 IKVIDKNGEVLEYEKLYEYSSKIINKFDIMYRVYEDLREKGFIVRSGVKYGADFAVYTLG 122
Query: 152 PSLVHSEYAVLVLAEGED 169
P L H+ Y V+ + E+
Sbjct: 123 PGLEHAPYVVIAVDIDEE 140
>sp|C4KIA4|ENDA_SULIK tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=endA PE=3 SV=1
Length = 182
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 37 AVLAGYSALLAVEAEQTELLNRACFGRHIVTAE----KDK-QWYQLGMEEGFYLCHSLKC 91
A+L G L+ E + + +G+ I ++ KD + +L + E YL
Sbjct: 4 ALLVGSKVLIPNVDESRYIYSNGFYGKAIGISKPKGPKDIIRPLELSLIESVYLAKK-GL 62
Query: 92 LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
+K++ ++ ++L++Y F ++Y+ Y LR+K ++VRSG +YG DF Y
Sbjct: 63 IKVIDKNGEVLEYEKLYEYSSKIINKFDIMYRVYEDLREKGFIVRSGVKYGADFAVYTLG 122
Query: 152 PSLVHSEYAVLVLAEGED 169
P L H+ Y V+ + E+
Sbjct: 123 PGLEHAPYVVIAVDIDEE 140
>sp|C3N6N2|ENDA_SULIA tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain
M.16.27) GN=endA PE=3 SV=1
Length = 182
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 37 AVLAGYSALLAVEAEQTELLNRACFGRHIVTAE----KDK-QWYQLGMEEGFYLCHSLKC 91
A+L G L+ E + + +G+ I ++ KD + +L + E YL
Sbjct: 4 ALLVGSKVLIPNVDESRYIYSNGFYGKAIGISKPKGPKDIIRPLELSLIESVYLAKK-GL 62
Query: 92 LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
+K++ ++ ++L++Y F ++Y+ Y LR+K ++VRSG +YG DF Y
Sbjct: 63 IKVIDKNGEVLEYEKLYEYSSKIINKFDIMYRVYEDLREKGFIVRSGVKYGADFAVYTLG 122
Query: 152 PSLVHSEYAVLVLAEGED 169
P L H+ Y V+ + E+
Sbjct: 123 PGLEHAPYVVIAVDIDEE 140
>sp|C3MWW5|ENDA_SULIM tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=endA PE=3 SV=1
Length = 182
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 37 AVLAGYSALLAVEAEQTELLNRACFGRHIVTAE----KDK-QWYQLGMEEGFYLCHSLKC 91
A+L G L+ E + + +G+ I ++ KD + +L + E YL
Sbjct: 4 ALLVGSKVLIPNVDESRYIYSTGFYGKAIGISKPKGPKDIIRPLELSLIESVYLAKK-GL 62
Query: 92 LKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH 151
+K++ ++ ++L++Y F ++Y+ Y LR+K ++VRSG +YG DF Y
Sbjct: 63 IKVIDKNGEVLEYEKLYEYSSKIINKFDIMYRVYEDLREKGFIVRSGVKYGADFAVYTLG 122
Query: 152 PSLVHSEYAVLVLAEGED 169
P L H+ Y V+ + E+
Sbjct: 123 PGLEHAPYVVIAVDIDEE 140
>sp|Q975R3|ENDA_SULTO tRNA-splicing endonuclease OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=endA PE=1 SV=1
Length = 180
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 67 TAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDE-LWQYMKAKKETFPLLYKAY 125
+AE+ L + EG YL K L+IV N + D E L+Q + F +LY Y
Sbjct: 38 SAEEINSELILSLIEGVYLVKKGK-LEIV--SNGERLDFERLYQIGVTQIPRFRILYSVY 94
Query: 126 SHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAE 166
LR+K +VVRSG +YG DF Y P + H+ Y V+ L E
Sbjct: 95 EDLREKGYVVRSGIKYGADFAVYTIGPGIEHAPYLVIALDE 135
>sp|Q4JAF4|ENDA_SULAC tRNA-splicing endonuclease OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=endA PE=3 SV=1
Length = 181
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 67 TAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYS 126
+ E K+ L + E YL K ++++ D +D L++ F LLY Y
Sbjct: 39 SPEDIKKPLILSLIEALYLSKK-KIIEVI-RDGKVIDDALLYKIGMENIPRFELLYTVYE 96
Query: 127 HLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGED 169
LR+K +VVRSG +YG DF Y P L H+ Y V+ + E ++
Sbjct: 97 DLREKKFVVRSGMKYGADFAIYTVAPGLEHAPYLVIAIDEEQE 139
>sp|Q8ZVI1|ENDA_PYRAE tRNA-splicing endonuclease OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=endA
PE=1 SV=1
Length = 183
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 18/173 (10%)
Query: 39 LAGYSALLAVEAEQTELLNR----ACFGRHIV-------TAEKDKQWYQLGMEEGFYLCH 87
+ GY LAV E E R +GR + EK LG+ E YL
Sbjct: 1 MIGYLRGLAVIVEDVEFARRLYKEGFYGRFLGYDKVKRDEVEKINAPLILGLYEALYLAE 60
Query: 88 SLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVA 147
+ LK++GED +EL + + F +YK Y + R +VV+SG ++G F
Sbjct: 61 KGR-LKVMGEDGREVAPEELAALGRERMRNFDEIYKIYKYFRDLGYVVKSGLKFGALFSV 119
Query: 148 YRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTI 200
Y P + H+ V+V E + G + +DI RL V KT + T+
Sbjct: 120 YEKGPGIDHAP-MVVVFLEPDKGISA-----TDITRGGRLSHSVRKTWTLATV 166
>sp|Q58819|ENDA_METJA tRNA-splicing endonuclease OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=endA PE=1 SV=1
Length = 179
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKN 132
+ L + E YL + L L++ +DN + +EL++Y + +E L Y Y LR +
Sbjct: 41 NFLSLSLVEALYLIN-LGWLEVKYKDNKPLSFEELYEYARNVEERLCLKYLVYKDLRTRG 99
Query: 133 WVVRSGSQYGVDFVAYRHHPSL--VHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGG 190
++V++G +YG DF Y ++ HS Y V V E + S++ VR+
Sbjct: 100 YIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSS------FLLSELTGFVRVAHS 153
Query: 191 VAKTLLILTINKNGQ 205
V K LLI ++ +G
Sbjct: 154 VRKKLLIAIVDADGD 168
>sp|Q9YBF1|ENDA_AERPE tRNA-splicing endonuclease OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=endA PE=1
SV=2
Length = 186
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 34 EAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQW-----YQLGMEEGFYLCHS 88
+A VL G ++L + EQ L + + EK + +L + E YL
Sbjct: 9 KASGVLIG-DSVLVTDVEQARSLYSCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLAEK 67
Query: 89 LKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAY 148
L++ D S+ ++L ++ F +LY Y LR++ +VVRSG ++G DF Y
Sbjct: 68 -GVLEVAKPDGSSVGVEDLRTAVRGNPR-FSMLYNIYRDLRERGFVVRSGLKFGSDFAVY 125
Query: 149 RHHPSLVHSEYAV 161
R P + H+ + V
Sbjct: 126 RLGPGIDHAPFIV 138
>sp|O07118|ENDA_HALVD tRNA-splicing endonuclease OS=Haloferax volcanii (strain ATCC 29605
/ DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=endA PE=1 SV=2
Length = 339
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 55 LLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAK 114
L R FG+ + D QL + E YL + L I D ++ D +
Sbjct: 189 LYQRGFFGQRLYGRNADSGPLQLSLLEAAYLARA-DALAIDEADVVSRGRD-------VE 240
Query: 115 KETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPS---LVHSEYAVLVLAEGEDGE 171
+ F Y+ LR+ V +SG ++G DF Y S L HSE+ V V+A
Sbjct: 241 GDRFDRRLAVYAALREAKTVPKSGFKFGSDFRVYTEFESVDDLSHSEFLVRVVAPDH--- 297
Query: 172 NGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQ 205
V D+ VRL GGV K ++ + NG+
Sbjct: 298 ---TFVPRDLSLDVRLAGGVRKRMVFALTDDNGE 328
>sp|A2BIW2|ENDA_HYPBU tRNA-splicing endonuclease OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=endA PE=3 SV=1
Length = 181
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 91 CLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRH 150
L++ E+ + +E+ + + F LLYK Y LR + +VVRSG +YG DF Y
Sbjct: 61 MLEVYDEEGHRVSVEEVRRRAERFIPKFELLYKVYRDLRDRGYVVRSGLKYGSDFAVYER 120
Query: 151 HPSLVHSEYAVLVLAEGED 169
P L H+ Y V V+ E+
Sbjct: 121 GPGLEHAPYLVHVMRVDEE 139
>sp|A1RSY7|ENDA_PYRIL tRNA-splicing endonuclease OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=endA PE=3 SV=1
Length = 183
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 77 LGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVR 136
L + E YL K LK+V ++ + ++L + + K + F +YK Y + R +VV+
Sbjct: 50 LALYEALYLAERGK-LKVVSKNGTEVLPEKLIELGREKIKNFDDIYKIYKYFRDLGYVVK 108
Query: 137 SGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLL 196
SG ++G F Y P + H+ V+ L E R +DI RL V KT
Sbjct: 109 SGLKFGALFSVYERGPGIDHAPMVVVFL------EPDRGISATDITRGGRLSHSVKKTFT 162
Query: 197 ILTINKN 203
+ T++K
Sbjct: 163 LATVSKQ 169
>sp|B1Y9D1|ENDA_PYRNV tRNA-splicing endonuclease OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=endA PE=3 SV=1
Length = 183
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 77 LGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVR 136
L + E YL + +K+V ED + ++L + + F +YK Y + R +VV+
Sbjct: 50 LALYEALYLAERGR-IKVVAEDGAEIPPEKLAELGRGMIRNFDDVYKIYKYFRDLGYVVK 108
Query: 137 SGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLL 196
SG ++G F Y P + H+ V+ L E R +DI RL V KT
Sbjct: 109 SGLKFGALFSVYEKGPGIDHAPMVVVFL------EPDRGISATDITRGGRLGHSVKKTFT 162
Query: 197 ILTINKN 203
+ T+ +
Sbjct: 163 LATVLRQ 169
>sp|P16658|SEN2_YEAST tRNA-splicing endonuclease subunit SEN2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SEN2 PE=1 SV=1
Length = 377
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 21/164 (12%)
Query: 81 EGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKE--TFPLLYKAYSHLRKKNWVVRSG 138
E +L +L L I + K L+Q+ K+ +F Y Y H R W VRSG
Sbjct: 224 EAMFLTFALPVLDISPACLAGK----LFQFDAKYKDIHSFVRSYVIYHHYRSHGWCVRSG 279
Query: 139 SQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLIL 198
++G D++ Y+ P H+E+ V+ G D + + W R+ GG KT ++
Sbjct: 280 IKFGCDYLLYKRGPPFQHAEFCVM----GLDHDVSKDYTW--YSSIARVVGGAKKTFVLC 333
Query: 199 TINK---------NGQGTATPSCLEQYAVEERTISRWSPEQCRE 233
+ + + + V E RW P + R+
Sbjct: 334 YVERLISEQEAIALWKSNNFTKLFNSFQVGEVLYKRWVPGRNRD 377
>sp|A4WLV3|ENDA_PYRAR tRNA-splicing endonuclease OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=endA PE=3 SV=1
Length = 183
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 77 LGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVR 136
L + E YL L++V + L + + K + F +YK Y + R +VV+
Sbjct: 50 LALYEALYLVER-GVLEVVTDSGEKITQTRLVELGREKLKNFDEIYKIYKYFRDLGYVVK 108
Query: 137 SGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLL 196
SG ++G F Y P + H+ V+V E + G + +DI RL V KT
Sbjct: 109 SGLKFGALFSVYEKGPGIDHAP-MVVVFLEPDKGISA-----TDITRGGRLGHSVKKTFT 162
Query: 197 ILTINKN 203
+ T+ KN
Sbjct: 163 LATVLKN 169
>sp|Q6LY59|ENDA_METMP tRNA-splicing endonuclease OS=Methanococcus maripaludis (strain S2
/ LL) GN=endA PE=3 SV=1
Length = 177
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 72 KQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKK 131
+ + L EG YL S + + ++ + +EL+ + + Y AY LR +
Sbjct: 39 ENFLSLSFVEGLYLV-SKNWISLRDKNKKLLSFEELFDVAQNIDRKLCIRYLAYKDLRNR 97
Query: 132 NWVVRSGSQYGVDFVAY-RHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGG 190
+ VR+G +YG DF Y R + +HS Y V V +E E S+I VR+
Sbjct: 98 GYTVRTGLKYGSDFRLYERSNIDEIHSRYLVKVFSEEIPCE------ISEITGFVRVAHS 151
Query: 191 VAKTLLILTINKNG 204
V K L+I ++ +G
Sbjct: 152 VRKELIIAIVDADG 165
>sp|Q5JHP5|ENDA_PYRKO tRNA-splicing endonuclease OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=endA PE=3 SV=1
Length = 168
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 105 DELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVL 164
+E+ +A+ E F Y Y LR + + V+SG ++G F YR HSE+ V V+
Sbjct: 64 EEIMNLGRARDELFDAKYLVYKDLRDRGYTVKSGLKFGSHFRVYRRGME-EHSEWLVWVV 122
Query: 165 AEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGT 207
EN RL +DI VR+ GV K +++ ++++ T
Sbjct: 123 P-----ENSRLSP-NDITARVRVAHGVRKNMIMAIVDEDADVT 159
>sp|C5A2D9|ENDA_THEGJ tRNA-splicing endonuclease OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=endA PE=3 SV=1
Length = 168
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 105 DELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVL 164
+EL + + E F Y Y LR + + V+SG ++G F YR HS++ V VL
Sbjct: 64 EELMNLGRERDELFDAKYLVYKDLRDRGYTVKSGLKFGSHFRVYRRGMD-EHSQWLVWVL 122
Query: 165 AEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGT 207
EN RL +DI VR+ GV K +++ ++++ T
Sbjct: 123 P-----ENSRLSP-NDITARVRVAHGVRKNMIMAIVDEDADVT 159
>sp|Q46FK9|ENDA_METBF tRNA-splicing endonuclease OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=endA PE=3 SV=1
Length = 350
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 45 LLAVEAEQTE-LLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKN 103
++A +A+ +E L R +G+ + D + QL + E YL S + + +
Sbjct: 188 VIAWDAQASETLYKRGFYGKML-----DSERLQLSLVESLYLF-SRGIITVRDRKGKVFS 241
Query: 104 DDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPS---LVHSEYA 160
DE + + F Y AY +LR VV++G ++G +F YR S + HSEY
Sbjct: 242 FDEFIEKASEIESFFLRKYSAYKNLRDSGHVVKTGFKFGTNFRVYRKVESIEKIPHSEY- 300
Query: 161 VLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLI 197
LV A D E RL V S VRL V K +L
Sbjct: 301 -LVNAIPADFEF-RLSVMS---GAVRLANSVRKKMLF 332
>sp|A6UPD9|ENDA_METVS tRNA-splicing endonuclease OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=endA PE=3 SV=1
Length = 177
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 79 MEEGFYLCHSLKCLKIVGED--------NSTKNDDELWQYMKAKKETFPLLYKAYSHLRK 130
+ E F ++ L +V +D N + +EL + + + Y Y LR
Sbjct: 37 LHENFLSLSYVEALYLVAKDWVLIRDKKNKILSFEELHEIAHVIDKKLCIRYLVYKDLRN 96
Query: 131 KNWVVRSGSQYGVDFVAY-RHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCG 189
+ + VR+G +YG DF Y R + VHS+Y V V +E E S+I VR+
Sbjct: 97 RGYTVRTGLKYGSDFRLYERSNIDEVHSKYLVKVFSEEIPCE------ISEITGFVRVAH 150
Query: 190 GVAKTLLILTINKNG 204
V K L+I ++ +G
Sbjct: 151 SVRKELVIAIVDADG 165
>sp|Q8PZI1|ENDA_METMA tRNA-splicing endonuclease OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=endA PE=3 SV=1
Length = 353
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 55 LLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAK 114
L +R +G+ + D + QL + E YL S + + + DE +
Sbjct: 202 LYSRGFYGKML-----DPERLQLSLVESLYLF-SRGVIVVRDRKGKIFSFDEFVEKASEI 255
Query: 115 KETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPS---LVHSEYAVLVLAEGEDGE 171
+ +F Y AY LR VV++G ++G F YR S + HSEY V V+ ED E
Sbjct: 256 EGSFLRKYSAYKALRDSGHVVKTGFKFGTHFRVYRKVESIEKIPHSEYLVNVIP--EDYE 313
Query: 172 NGRLRVWSDIHCTVRLCGGVAKTLLI 197
RL V S VRL V K +L
Sbjct: 314 F-RLPVMS---GAVRLANSVRKRMLF 335
>sp|Q8U429|ENDA_PYRFU tRNA-splicing endonuclease OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=endA PE=3 SV=1
Length = 170
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 112 KAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGE 171
K K E F + Y Y LR + ++V+S ++G + YR HS++ V V+ E +
Sbjct: 74 KKKDEDFDVKYLVYKDLRDRGYIVKSALKFGSHYRVYRKGAE--HSDWLVWVVRESQKLS 131
Query: 172 NGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQ 205
+DI R+ GV KT+++ ++++G
Sbjct: 132 P------NDITARARVAHGVRKTMVLAVVDEDGD 159
>sp|Q8TGZ5|ENDAL_METKA EndA-like protein OS=Methanopyrus kandleri (strain AV19 / DSM 6324
/ JCM 9639 / NBRC 100938) GN=MK0397 PE=3 SV=1
Length = 166
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 76 QLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVV 135
QL EE +LC + V N + +EL + FP+ Y Y+ LR++ W
Sbjct: 37 QLWPEEALFLCEIGRLE--VRSGNVRISPEELMDRFVEEDPRFPVRYAVYADLRRRGWKP 94
Query: 136 RSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTL 195
+ G ++G +F A+R + AV VL E D + DI ++L G L
Sbjct: 95 KPGRKFGTEFRAFRGEDERI----AVKVLQEELDEFTAQ-----DILEWLKLVEGTEFEL 145
Query: 196 LILTINKN 203
++ ++ +
Sbjct: 146 VVAIVDND 153
>sp|Q8TGX1|ENDA_METAC tRNA-splicing endonuclease OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=endA PE=3
SV=1
Length = 350
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 10/137 (7%)
Query: 71 DKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRK 130
D + QL + E YL S + + + + DE + + +F Y AY LR
Sbjct: 210 DPERLQLSLVESLYLF-SRGIIVVRDRKDRIFSFDEFVEKASEIESSFLRKYGAYKALRD 268
Query: 131 KNWVVRSGSQYGVDFVAYRHHPS---LVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRL 187
VV++G ++G F YR S + HSEY V V+ + RL V S VRL
Sbjct: 269 SGHVVKTGFKFGTHFRVYRKVESIEKIPHSEYLVNVIPSDYE---FRLPVMS---GAVRL 322
Query: 188 CGGVAKTLLILTINKNG 204
V K +L + G
Sbjct: 323 ANSVRKRMLFAVEKEEG 339
>sp|Q8TGZ7|ENDA_METKA tRNA-splicing endonuclease OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=endA PE=3 SV=1
Length = 179
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 105 DELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVL 164
+EL + + ++ F Y Y L ++ +VV+SG +YG F Y P HS+Y V V+
Sbjct: 72 EELLSFFERRRPGFRAGYVVYRDLTERGYVVKSGFKYGGRFRVYEEDPDREHSKYVVRVV 131
>sp|Q9HIY5|ENDA_THEAC tRNA-splicing endonuclease OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=endA PE=1 SV=1
Length = 289
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 124 AYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHC 183
YS L + +V++G +YG +F Y S H+EY V V+ E E W I
Sbjct: 205 VYSDLVGRGCIVKTGFKYGANFRVYLGRDSQ-HAEYLVSVMPEEER--------WYSISR 255
Query: 184 TVRLCGGVAKTLLILTINKN 203
VR+ V KT++ +I KN
Sbjct: 256 GVRVASSVRKTMIYASIYKN 275
>sp|Q74MP4|ENDA_NANEQ tRNA-splicing endonuclease OS=Nanoarchaeum equitans (strain Kin4-M)
GN=endA PE=1 SV=1
Length = 154
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 60 CFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFP 119
FG ++ +K +L + E +YL + V ED+ + +E + E F
Sbjct: 5 LFGNRVLVDDK-----ELPLIEAYYLLDKGELE--VYEDDKKLSKEEFLKKCLTYDERFL 57
Query: 120 LLYKAYSHLRKKNWVVRSGSQYGVDFVAY 148
+ YKAY LR K + + + ++G DF Y
Sbjct: 58 IRYKAYKELRDKGYTLGTALKFGADFRVY 86
>sp|P39707|SEN34_YEAST tRNA-splicing endonuclease subunit SEN34 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SEN34 PE=1
SV=1
Length = 275
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 109 QYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAV 161
QY +A K LYKA LR + +V+ G ++G F+AY P HS +
Sbjct: 173 QYRQAGKMQTYFLYKA---LRDQGYVLSPGGRFGGKFIAYPGDPLRFHSHLTI 222
>sp|Q97B25|GSA_THEVO Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=hemL PE=3 SV=1
Length = 420
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 84 YLCHSLK----CLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGS 139
++ H++K ++ D+ DD L KA+KE + L+KA S KN V S
Sbjct: 338 HITHTIKYYGTMFQVFFADHVNNYDDAL----KARKEVYFKLFKALS----KNGVYLPPS 389
Query: 140 QYGVDFVAYRHHPSLVHSEYAVL 162
QY +FV++ H S + + A
Sbjct: 390 QYETNFVSFAHSDSDIDATLAAF 412
>sp|Q6L1P9|ENDA_PICTO tRNA-splicing endonuclease OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=endA
PE=3 SV=1
Length = 284
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 125 YSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCT 184
Y L K+ ++V+SG +YG +F Y++ + HS+Y V + +W I
Sbjct: 199 YKDLIKRGFIVKSGFKYGSNFRIYKNSMN-EHSDYLVNYMDHD---------LWYVIARA 248
Query: 185 VRLCGGVAKTLLILTINKN 203
VRL V K L+I I N
Sbjct: 249 VRLASNVRKRLIISGIIDN 267
>sp|Q8JMY4|DPOL_HBVF2 Protein P OS=Hepatitis B virus genotype F1 subtype adw4 (isolate El
Salvador/1116Sal/1997) GN=P PE=3 SV=1
Length = 843
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 164 LAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERT 222
LA G+ G +GR+R W +H R GV T N + SC Q AV E+T
Sbjct: 232 LANGKQGRSGRIRSW--VHTPTRWPAGVEPTGTGCAYNIASRSA---SCFHQSAVREKT 285
>sp|Q754T3|SEN34_ASHGO tRNA-splicing endonuclease subunit SEN34 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SEN34 PE=3 SV=2
Length = 292
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 122 YKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAV 161
Y Y +LR++ + + +G ++G +VAY P HS AV
Sbjct: 176 YLIYRYLREEQYFLSAGGRFGARYVAYPGDPLRYHSHMAV 215
>sp|Q99HS4|DPOL_HBVF3 Protein P OS=Hepatitis B virus genotype F1 (isolate
Argentina/sa11/2000) GN=P PE=3 SV=1
Length = 843
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 164 LAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNGQGTATPSCLEQYAVEERT 222
LA G+ G +GR+R W +H R GV T N + SC Q AV E+T
Sbjct: 232 LANGKQGRSGRIRSW--VHTPTRWPVGVESTGTGCAYNIASRSA---SCFHQSAVREKT 285
>sp|Q6D5X9|KATG_ERWCT Catalase-peroxidase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=katG PE=3 SV=1
Length = 724
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 130 KKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTV-RLC 188
+K W+ S +YG D +P + V EG DG++ LR D+ T R+
Sbjct: 193 EKEWLANSTERYGSDDRTSLENPLAAVQMGLIYVNPEGVDGKSDPLRTAQDMRVTFSRMA 252
Query: 189 GGVAKTLLIL----TINK---NGQGTATPSCLEQYAVEERTISRWSPEQCREDPATVANG 241
+T+ + T+ K NG + + E VEE+ + +P + TV +G
Sbjct: 253 MNDEETVALTAGGHTVGKTHGNGDASLLGAAPESADVEEQGLGWHNPTGSGKGRYTVTSG 312
Query: 242 IK 243
++
Sbjct: 313 LE 314
>sp|Q5FQ87|ADEC_GLUOX Adenine deaminase OS=Gluconobacter oxydans (strain 621H) GN=ade
PE=3 SV=1
Length = 565
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 110 YMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVD-FVAYRHHPSLVH-SEYA-VLVLAE 166
++ A + T L S + SG+ VD VAYRHHP ++ +E+ + +
Sbjct: 119 FLAAAERTIMDLRVNLSSCVPATSMETSGAVLNVDDLVAYRHHPKVIGLAEFMNIPGVLN 178
Query: 167 GEDGENGRLRVWSDIHC---TVRLCGGVAKTLLILTINKNGQGTATPSCLEQ 215
G+ G +L ++D H +CG L I+ + + TA LE+
Sbjct: 179 GDPGCVDKLAAFADGHIDGHAPLMCGKALNGYLAAGISTDHEATAADEALEK 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,821,049
Number of Sequences: 539616
Number of extensions: 3817468
Number of successful extensions: 7909
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7854
Number of HSP's gapped (non-prelim): 50
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)