Query 043831
Match_columns 243
No_of_seqs 191 out of 592
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zyz_B TRNA-splicing endonucle 100.0 9.9E-44 3.4E-48 302.9 18.3 161 35-203 1-169 (183)
2 2cv8_A TRNA-splicing endonucle 100.0 1.7E-43 5.7E-48 300.8 15.7 160 35-203 1-166 (180)
3 3ajv_B TRNA-splicing endonucle 100.0 4.9E-43 1.7E-47 299.5 17.4 160 32-200 7-171 (186)
4 1a79_A TRNA endonuclease; 2.28 100.0 7.1E-43 2.4E-47 294.7 17.1 155 35-204 2-159 (171)
5 3iey_A TRNA-splicing endonucle 100.0 1.5E-38 5.2E-43 264.5 10.5 121 73-201 13-141 (154)
6 1r0v_A ENDA, tRNA-intron endon 100.0 1.5E-37 5E-42 283.4 12.6 147 32-201 146-295 (305)
7 3iey_B NEQ261; protein heterod 100.0 9.8E-36 3.4E-40 247.3 8.4 128 58-204 10-139 (153)
8 4fz2_A TRNA intron endonucleas 100.0 2.6E-34 8.8E-39 268.2 14.5 149 43-204 136-293 (395)
9 2ohc_A TRNA-splicing endonucle 100.0 2.3E-32 7.8E-37 247.2 11.8 121 32-201 153-273 (289)
10 3ajv_A Putative uncharacterize 100.0 6.1E-28 2.1E-32 206.1 13.8 148 31-204 29-176 (190)
11 1r0v_A ENDA, tRNA-intron endon 99.9 2.9E-22 1E-26 182.5 7.0 125 39-204 2-126 (305)
12 2ohc_A TRNA-splicing endonucle 99.8 2.4E-18 8.1E-23 155.6 14.2 125 38-204 4-133 (289)
13 2zyz_A Putative uncharacterize 99.7 1.7E-17 5.8E-22 131.7 7.7 88 119-232 23-111 (116)
14 4fz2_A TRNA intron endonucleas 99.6 7.2E-17 2.5E-21 150.8 3.9 138 35-203 5-143 (395)
15 2xtc_A F-box-like/WD repeat-co 30.3 16 0.00055 27.1 1.0 24 120-144 8-31 (90)
16 2p5k_A Arginine repressor; DNA 28.4 77 0.0026 20.1 4.1 34 100-134 18-51 (64)
No 1
>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=100.00 E-value=9.9e-44 Score=302.90 Aligned_cols=161 Identities=27% Similarity=0.417 Sum_probs=147.4
Q ss_pred eEEEEeCCeEEEeechhhH-HHHHhccccccccc-----Cccc--CceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHH
Q 043831 35 AHAVLAGYSALLAVEAEQT-ELLNRACFGRHIVT-----AEKD--KQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDE 106 (243)
Q Consensus 35 ~~g~L~g~~V~v~~~~~~~-~L~~~~~yG~~~~~-----~~~~--~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~e 106 (243)
|+|.|.+|+|+| ++.+.. .||++++||++.+. ++++ .++|+|||+||+||+ ++|+|+|.+.++.++|+++
T Consensus 1 ~~~~l~~~~v~v-~d~~~~~~L~~~~~~G~~~g~~~p~~~~~~~~~~~L~Ls~eEa~yL~-~~g~l~v~d~~~~~ls~~e 78 (183)
T 2zyz_B 1 MIGYLRGLAVIV-EDVEFARRLYKEGFYGRFLGYDKVKRDEVEKINAPLILGLYEALYLA-EKGRLKVMGEDGREVAPEE 78 (183)
T ss_dssp CEEEECSSEEEE-CCHHHHHHHHHTTCCSEETTCCSCCGGGGGGCCSCEEEEHHHHHHHH-HTTSCEEECTTSCEECHHH
T ss_pred CeEEEECCEEEE-EccHHHHHHHHCCccceECCCCCCCCcccccCcceEEeeHHHHHHHH-HCCCEEEECCCCCcCCHHH
Confidence 689999999999 666654 59999999999983 2233 378999999999999 7999999987789999999
Q ss_pred HHHHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhh
Q 043831 107 LWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVR 186 (243)
Q Consensus 107 l~~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~R 186 (243)
+|+.+...++.|..+|.||+|||++||+|+||+|||+||+||+++|.++||+|+|+++++++.++ |.+|++.+|
T Consensus 79 l~~~~~~~~~~f~~~y~vy~~lr~~G~~v~~G~kfG~df~vY~~~P~~~Hs~~~V~v~~~~~~~~------~~~l~~~~R 152 (183)
T 2zyz_B 79 LAALGRERMRNFDEIYKIYKYFRDLGYVVKSGLKFGALFSVYEKGPGIDHAPMVVVFLEPDKGIS------ATDITRGGR 152 (183)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEESSCSSSSSCCEEEEECCTTCCBC------HHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHCCeEeccccccCceEEEEcCCCCCccceEEEEEecCCCccC------HHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999887655 999999999
Q ss_pred hcccccCcEEEEEEecC
Q 043831 187 LCGGVAKTLLILTINKN 203 (243)
Q Consensus 187 la~sVkK~llla~v~~~ 203 (243)
+|++|||++|+|+|+++
T Consensus 153 la~~vkK~~vla~v~~~ 169 (183)
T 2zyz_B 153 LSHSVRKTWTLATVLRQ 169 (183)
T ss_dssp HCCSTTCCEEEEEECTT
T ss_pred heeccccEEEEEEEECC
Confidence 99999999999999853
No 2
>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-43 Score=300.81 Aligned_cols=160 Identities=27% Similarity=0.407 Sum_probs=134.3
Q ss_pred eEEEEeCCeEEEeechhhH-HHHHhcccccccccC--c---ccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHH
Q 043831 35 AHAVLAGYSALLAVEAEQT-ELLNRACFGRHIVTA--E---KDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELW 108 (243)
Q Consensus 35 ~~g~L~g~~V~v~~~~~~~-~L~~~~~yG~~~~~~--~---~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~ 108 (243)
|+|.|.+|+|+| ++.++. .||++++||++.++. . ...++|+|||+||+||+ .+|+|+|.+ ++.++|++++|
T Consensus 1 ~~~~l~~~~v~v-~d~~~~~~L~~~~~yG~~~g~~~p~~~~~~~~~L~Ls~eEA~yL~-~~g~l~v~d-~~~~ls~~el~ 77 (180)
T 2cv8_A 1 MIGELVKDKILI-KNIEDARLIYKMGYYGKPIGISKPKSAEEINSELILSLIEGVYLV-KKGKLEIVS-NGERLDFERLY 77 (180)
T ss_dssp CEEEEETTEEEE-CCHHHHHHHHHHHSCSEECC-----------CCEEEEHHHHHHHH-HTTSCEEEE-TTEEECHHHHH
T ss_pred CeEEEECCEEEE-EchHHHHHHHHCCccceEcCCCCccccccCCceEEEeHHHHHHHH-HCCCEEEee-CCCCCCHHHHH
Confidence 689999999999 666644 599999999998751 1 23368999999999999 599999986 56889999999
Q ss_pred HHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhc
Q 043831 109 QYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLC 188 (243)
Q Consensus 109 ~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla 188 (243)
+.+...++.|..+|.||+|||++||+|+||+|||+||+||+++|.++||+|+|+++++++.++ |.+|++.+|+|
T Consensus 78 ~~~~~~~~~f~~~y~VY~~Lr~~G~~v~~G~kfG~df~vY~~~P~~~Hs~~~V~v~~~~~~~~------~~~l~~~~Rla 151 (180)
T 2cv8_A 78 QIGVTQIPRFRILYSVYEDLREKGYVVRSGIKYGADFAVYTIGPGIEHAPYLVIALDENSQIS------SNEILGFGRVS 151 (180)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEECSCC-----CEEEEEEETTCEEE------HHHHTTSSSCC
T ss_pred HHHhhhcccHHHHhHHHHHHHhCCeEeccccccCceEEEEcCCCCCccccEEEEEEcCCCCcC------HHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999887655 99999999999
Q ss_pred ccccCcEEEEEEecC
Q 043831 189 GGVAKTLLILTINKN 203 (243)
Q Consensus 189 ~sVkK~llla~v~~~ 203 (243)
++|||++|+|+|++.
T Consensus 152 ~~v~K~~vla~v~~~ 166 (180)
T 2cv8_A 152 HSTRKELILGIVNLT 166 (180)
T ss_dssp ----CEEEEEEECTT
T ss_pred hccccEEEEEEEECC
Confidence 999999999999853
No 3
>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_B
Probab=100.00 E-value=4.9e-43 Score=299.52 Aligned_cols=160 Identities=25% Similarity=0.403 Sum_probs=145.0
Q ss_pred CcceEEEEeCCeEEEeechh-hHHHHHhcccccccccC----cccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHH
Q 043831 32 QSEAHAVLAGYSALLAVEAE-QTELLNRACFGRHIVTA----EKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDE 106 (243)
Q Consensus 32 ~~~~~g~L~g~~V~v~~~~~-~~~L~~~~~yG~~~~~~----~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~e 106 (243)
..++.|.|.||+|+| ++.+ ...||++++||++.+.. .+..++|+|||+||+||+ .+|+|+|.+.++..+|+++
T Consensus 7 ~~~~~~~l~~~~v~v-~d~~~~~~L~~~~~yG~~~g~~~p~~~~~~~~L~Ls~~Ea~yL~-~~g~l~v~~~~~~~ls~~e 84 (186)
T 3ajv_B 7 PIKASGVLIGDSVLV-TDVEQARSLYSCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLA-EKGVLEVAKPDGSSVGVED 84 (186)
T ss_dssp CCCEEEEEETTEEEE-CCHHHHHHHHHTTCCSEESSCSSCSTTCCCCCEEEEHHHHHHHH-HTTSEEEECTTSCEECHHH
T ss_pred CcceeEEEECCEEEE-EccHHHHHHHHCCccceECCCCCCCccCCCceEEEeHHHHHHHH-HCCCEEEECCCCCcCCHHH
Confidence 457899999999999 6655 44599999999999831 122379999999999999 7999999987788999999
Q ss_pred HHHHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhh
Q 043831 107 LWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVR 186 (243)
Q Consensus 107 l~~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~R 186 (243)
+|+. +..++.|..+|.||+|||++||+|+||+|||+||+||+++|.++||+|+|+++++++.++ |.+|++.+|
T Consensus 85 l~~~-~~~~~~f~~~y~VY~dLr~rG~~v~~G~kfG~dflvY~~~P~~~Hs~~~V~v~~~~~~~~------~~~l~~~~R 157 (186)
T 3ajv_B 85 LRTA-VRGNPRFSMLYNIYRDLRERGFVVRSGLKFGSDFAVYRLGPGIDAAPFIVHAYSPEDNID------PVEIVRAGR 157 (186)
T ss_dssp HHHH-HHTSHHHHHHHHHHHHHHHTTCEEEECGGGTSSEEEESSCTTTSSSCEEEEEECTTCEEC------THHHHHHHH
T ss_pred HHHH-hhccchHHHHhhHHHHHHhCceEeccccccCceEEEECCCCCCccccEEEEEEcCCCCcC------HHHHHhhhh
Confidence 9999 677899999999999999999999999999999999999999999999999999887655 999999999
Q ss_pred hcccccCcEEEEEE
Q 043831 187 LCGGVAKTLLILTI 200 (243)
Q Consensus 187 la~sVkK~llla~v 200 (243)
+|++|||++|+|++
T Consensus 158 la~~vkK~~vla~v 171 (186)
T 3ajv_B 158 LSHSVRKKFVFAVT 171 (186)
T ss_dssp HHTTTCSEEEEEEE
T ss_pred hhhccccEEEEEEE
Confidence 99999999999999
No 4
>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1
Probab=100.00 E-value=7.1e-43 Score=294.73 Aligned_cols=155 Identities=28% Similarity=0.462 Sum_probs=142.4
Q ss_pred eEEEEeCCeEEEeechhhHH-HHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHh
Q 043831 35 AHAVLAGYSALLAVEAEQTE-LLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKA 113 (243)
Q Consensus 35 ~~g~L~g~~V~v~~~~~~~~-L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~ 113 (243)
|.|.|.+|+|+| ++.+... |++ ++||++.+. +|+|||+||+||++ +|+|+|.+.++.++|++++|+.+..
T Consensus 2 ~~~~l~~~~v~v-~~~~~~~~L~~-~~yG~~~~~------~L~Ls~~Ea~yL~~-~g~l~v~~~~~~~l~~~el~~~~~~ 72 (171)
T 1a79_A 2 ITGLLDGDRVIV-FDKNGISKLSA-RHYGNVEGN------FLSLSLVEALYLIN-LGWLEVKYKDNKPLSFEELYEYARN 72 (171)
T ss_dssp EEEEEETTEEEE-CCHHHHHHHHH-TTCSEECSS------CEEEEHHHHHHHHH-HTCEEEECSSSSCCCHHHHHHHHHH
T ss_pred ceEEEECCEEEE-ECcHHHHHHHh-CcCceEcCC------eEEEeHHHHHHHHH-cCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 789999999999 7776554 655 999999976 89999999999995 9999998765556999999999999
Q ss_pred cCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeC-C-CCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccc
Q 043831 114 KKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRH-H-PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGV 191 (243)
Q Consensus 114 ~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~-~-P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sV 191 (243)
.+++|..+|.||+|||+|||+|+||+|||+||+||++ + |..+||+|+|+|+++++.++ |.+|++.+|+|++|
T Consensus 73 ~~~~f~~~y~VY~dLr~rG~~v~~G~kfG~df~vY~~g~~P~~~Hs~~~V~v~~~~~~~~------~~~l~~~~Rla~~v 146 (171)
T 1a79_A 73 VEERLCLKYLVYKDLRTRGYIVKTGLKYGADFRLYERGANIDKEHSVYLVKVFPEDSSFL------LSELTGFVRVAHSV 146 (171)
T ss_dssp HCTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEECSSCCTTTSCCSEEEEEEETTSEEC------THHHHHHHHHHHHT
T ss_pred ccccHHHHhHHHHHHHHCCeEecccccCCceEEEEeCCCCCCCccceEEEEEEcCCCccC------HHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999 9 99999999999999887765 99999999999999
Q ss_pred cCcEEEEEEecCC
Q 043831 192 AKTLLILTINKNG 204 (243)
Q Consensus 192 kK~llla~v~~~~ 204 (243)
+|++|+|+|+.++
T Consensus 147 ~K~~vla~v~~~~ 159 (171)
T 1a79_A 147 RKKLLIAIVDADG 159 (171)
T ss_dssp TCEEEEEEECTTS
T ss_pred CcEEEEEEEeCCC
Confidence 9999999998544
No 5
>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans}
Probab=100.00 E-value=1.5e-38 Score=264.53 Aligned_cols=121 Identities=22% Similarity=0.399 Sum_probs=109.1
Q ss_pred ceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCC-
Q 043831 73 QWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH- 151 (243)
Q Consensus 73 ~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~- 151 (243)
+.|+|||+||+||++ .|+|+|.+ ++.+||++++|+.|++.+++|..+|.||+|||++||+|+||+|||+||+||++|
T Consensus 13 e~L~Ls~~EA~YL~~-~G~L~v~~-~~~~ls~~el~~~~~~~~~~f~~~y~vY~dLr~rG~~vk~G~KFG~dF~vY~~g~ 90 (154)
T 3iey_A 13 DDKELPLIEAYYLLD-KGELEVYE-DDKKLSKEEFLKKCLTYDERFLIRYKAYKELRDKGYTLGTALKFGADFRVYDIGV 90 (154)
T ss_dssp C--CEEHHHHHHHHH-HTSCCCCS-CCC----HHHHHHHHHHCTTHHHHHHHHHHHHHTTCEEEEEGGGTEEEEEECSSC
T ss_pred ceEEEcHHHHHHHHH-CCCEEEEE-CCCcCCHHHHHHHHHhcCccHHHHHHHHHHHHHCCcEECCCCccCceEEEECCCC
Confidence 589999999999995 69999976 578999999999999999999999999999999999999999999999999998
Q ss_pred -C------CCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEEEEEe
Q 043831 152 -P------SLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTIN 201 (243)
Q Consensus 152 -P------~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~llla~v~ 201 (243)
| ..+||+|+|+++++++.++ |.+|++.+|+|++|||++|+|+|+
T Consensus 91 ~P~~~~~~~~~Hs~~lV~v~~~~~~~~------~~~l~~~~Rla~~VkK~~vla~vd 141 (154)
T 3iey_A 91 IPKKGKRSEREHSKWVLYPVSKDETFD------FYEFASKNRVAHSTRKKMLMGIVS 141 (154)
T ss_dssp CSSTTTCCSSSSCSCEEEEEETTCEEE------HHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CccccccccccCceEEEEEeCCCCccC------HHHHHHHHHHHhhCCcEEEEEEEC
Confidence 7 8999999999999887655 999999999999999999999997
No 6
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Probab=100.00 E-value=1.5e-37 Score=283.35 Aligned_cols=147 Identities=27% Similarity=0.441 Sum_probs=131.7
Q ss_pred CcceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHH
Q 043831 32 QSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYM 111 (243)
Q Consensus 32 ~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~ 111 (243)
..+|+|. .+|+|++ +++ ..||+++|||++.++ +|||||+||+||++ .|||+|.+. +.+++|+.+
T Consensus 146 ~~~~~g~-l~d~vv~-~~~--~~ly~~~~yG~~~~~------~L~Lsl~EA~yL~~-~g~L~v~~~-----~~~el~~~~ 209 (305)
T 1r0v_A 146 LPEIAGV-LSDEYVI-TKQ--TEIFSRYFYGSEKGD------LVTLSLIESLYLLD-LGKLNLLNA-----DREELVKRA 209 (305)
T ss_dssp CCCEEEE-EETTEEE-ESC--THHHHTTCCSEEETT------EEEECHHHHHHHHH-HTCEEETTC-----CHHHHHHHH
T ss_pred cccceEE-EcCcEEE-ECc--hhhhhcCCCCcccCC------eeEEcHHHHHHHHh-cCcEEEecC-----CHHHHHHHH
Confidence 4578899 6666666 333 458999999999987 89999999999995 799999642 349999999
Q ss_pred HhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCC---CCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhc
Q 043831 112 KAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPS---LVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLC 188 (243)
Q Consensus 112 ~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~---~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla 188 (243)
+..+++|..+|.||+|||+|||+|+||+||||||+||+++|. .+||+|+|+ +++++.++ |.+|++.+|+|
T Consensus 210 ~~~~~~f~~~y~VY~dLR~rG~vvk~G~KFG~DFlvY~~~p~~~~~~Hs~~~V~-~~~~~~~~------~~~l~~~~Rla 282 (305)
T 1r0v_A 210 REVERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVD-IADSREIR------LIDLARAVRLA 282 (305)
T ss_dssp HHHSTTHHHHHHHHHHHHHTTCEEEECGGGTSSEEEESCCSSGGGGGGCSEEEE-ECTTSCBC------HHHHHHHHHHH
T ss_pred hhcCcchhhhhhHHHHHHHCCCEeccCcccCcEEEEECCCCCcccccchhEEEE-eCCCCccC------HHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999 999999999 78777655 99999999999
Q ss_pred ccccCcEEEEEEe
Q 043831 189 GGVAKTLLILTIN 201 (243)
Q Consensus 189 ~sVkK~llla~v~ 201 (243)
++|||++|+|+++
T Consensus 283 ~~VkK~lvla~v~ 295 (305)
T 1r0v_A 283 QNVRKRMVFAYGK 295 (305)
T ss_dssp HHTTCEEEEEETT
T ss_pred hccceEEEEEEEe
Confidence 9999999999986
No 7
>3iey_B NEQ261; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} PDB: 3if0_X
Probab=100.00 E-value=9.8e-36 Score=247.35 Aligned_cols=128 Identities=13% Similarity=0.214 Sum_probs=119.7
Q ss_pred hcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCccchhhhhchhhhhcCeEecc
Q 043831 58 RACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWVVRS 137 (243)
Q Consensus 58 ~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F~~~y~VY~dLR~rG~vvks 137 (243)
-.+||++.++ .|+|||+||+||+ +|+|+|. ++.+++++++|+.|+..+++|..+|.||+|||+|||+|+|
T Consensus 10 ~~~~G~~~~~------~L~Ls~~EA~yL~--~g~l~v~--~~~~l~~~~l~~~~~~~~~~F~~~y~VY~dLR~rG~~vk~ 79 (153)
T 3iey_B 10 VYYLGYNMGN------YIKISEPELLFVL--RNKPQIK--DRLKLDEKTIIKEGVKKYKNFWEIYYTVKDLILRGYRVRF 79 (153)
T ss_dssp GTTCSEECSS------SEECCHHHHHHHH--HHCTHHH--HHHTCCHHHHHHHHHHHCTTHHHHHHHHHHHHHTTCEEEE
T ss_pred heeeeeEcCC------EEEECHHHHHHHh--cCCEEec--cCCcCCHHHHHHHHHhcCcchhhhhHHHHHHHHCCCEEee
Confidence 4679999988 7999999999999 7999983 5677999999999999999999999999999999999999
Q ss_pred CCcCCccEEEeeCC--CCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEEEEEecCC
Q 043831 138 GSQYGVDFVAYRHH--PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLILTINKNG 204 (243)
Q Consensus 138 G~KFG~DF~vY~~~--P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~llla~v~~~~ 204 (243)
| |+||+||++| |..+||+|+|+|+++++.++ |.+|++.+|+|++|+|++|+|+|+.++
T Consensus 80 G---G~DFlvY~~g~~P~~~Ha~~~V~v~~e~~~i~------~~~L~~~~Rla~~VkK~~vla~Vd~~g 139 (153)
T 3iey_B 80 D---GFFIELYEKGIIPGTIEQDYLVYPVSGEIRMT------WGELLDIYNKAIARKSKFMLAIVDSEG 139 (153)
T ss_dssp C---SSSEEEECTTCCTTSSCCSEEEEEEETTCEEE------HHHHHHHHHHHHHTTCEEEEEEECTTS
T ss_pred C---CCeEEEEcCCCCCCcCcccEEEEEccCCCccC------HHHHHHHHHHhhccCcEEEEEEEcCCC
Confidence 9 9999999998 99999999999999987765 999999999999999999999998876
No 8
>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}
Probab=100.00 E-value=2.6e-34 Score=268.23 Aligned_cols=149 Identities=19% Similarity=0.306 Sum_probs=130.7
Q ss_pred eEEEeechhhHH-HHHhcccccccccCc-ccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCccch
Q 043831 43 SALLAVEAEQTE-LLNRACFGRHIVTAE-KDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETFPL 120 (243)
Q Consensus 43 ~V~v~~~~~~~~-L~~~~~yG~~~~~~~-~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F~~ 120 (243)
.+.+ +|.+... +|+.+++|++.+... .+.+.|||||+||+||+ ..|+|+|.+ ++.+++++.+...+++|..
T Consensus 136 i~~v-~DeE~~~t~ye~~~~g~~g~~~~~~~~~~LqLSlvEA~YL~-~~G~L~V~~-----~s~~el~~~~~~~~~~F~~ 208 (395)
T 4fz2_A 136 VTVI-DDDESGKDLYENFWLGQYGTYKVSEHGNLNKLDIYETLFLI-DMGVISIKN-----FTRAQIVNIASARRTDIMK 208 (395)
T ss_dssp EEEE-SCHHHHHHHHHHHCCSEESBTTBSSSCCCEEECHHHHHHHH-HTTCEEESS-----CCHHHHHHHHHHHCTTHHH
T ss_pred eEEE-eccccccchhhhcccccCccccccCCCcceeecHHHHHHHH-hCCCEEeec-----CCHHHHHHHHhhcchhhhh
Confidence 3444 6655444 899999999887633 34468999999999999 799999953 7999999999999999999
Q ss_pred hhhhchhhhhcCeEeccCCcCCccEEEeeCC-------CCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccC
Q 043831 121 LYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH-------PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAK 193 (243)
Q Consensus 121 ~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~-------P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK 193 (243)
+|.||+|||++||+||||+||||||+||++| |...||+|+|+++++++.++ |.+|++.+||||+|||
T Consensus 209 kY~VY~dLR~rG~vvksG~KFG~dFrvY~rG~~~~~~~p~~~Hs~~lV~v~~~~~~~~------~~~l~~~~RLa~sVrK 282 (395)
T 4fz2_A 209 LYDVYKDWRTKGYVVKTGFKFGTNFRIYFPGAKPIKENNEWIHSKHVLHVFPRDSKLI------ISEWARAIRVAHSVRK 282 (395)
T ss_dssp HHHHHHHHHTTTCEEEEEGGGTEEEEEECTTCCTTTTTTTSCCCCEEEEECCTTCEEE------HHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHCCCEeCcCcccCceEEEeecccccccCCCCccchheEEEEeCCCCeeC------HHHHHhhhehhcccce
Confidence 9999999999999999999999999999864 99999999999999888765 9999999999999999
Q ss_pred cEEEEEEecCC
Q 043831 194 TLLILTINKNG 204 (243)
Q Consensus 194 ~llla~v~~~~ 204 (243)
+||+|+++.++
T Consensus 283 ~~ilAi~~~~~ 293 (395)
T 4fz2_A 283 TFILAIPGKTR 293 (395)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEEECCCC
Confidence 99999876543
No 9
>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A
Probab=99.97 E-value=2.3e-32 Score=247.20 Aligned_cols=121 Identities=26% Similarity=0.369 Sum_probs=109.3
Q ss_pred CcceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHH
Q 043831 32 QSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYM 111 (243)
Q Consensus 32 ~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~ 111 (243)
..++.|.|.||+|+| ++. | ++|||++.++ ++| |||+||+||++
T Consensus 153 ~~~~~~~l~~~rv~v-~d~----L--~~~yG~~~~~-----~~L-Lsl~Ea~yL~~------------------------ 195 (289)
T 2ohc_A 153 PVSAPVVRMGGRSFG-AGD----L--EWWIGTAFHG-----FRL-LTENEANYISG------------------------ 195 (289)
T ss_dssp CCCCCCEEETTEEEE-ETT----S--CTTSSEEETT-----EEE-ECHHHHHHHTT------------------------
T ss_pred CccceEEEeCCEEEE-Ech----h--hhhcCCcCCC-----ccc-CCHHHHHHHhh------------------------
Confidence 567889999999999 555 5 8999999995 489 99999999995
Q ss_pred HhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccc
Q 043831 112 KAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGV 191 (243)
Q Consensus 112 ~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sV 191 (243)
+..+++| |.||+|||++||+||||+||||||+||+++|. +||+|+|++++++ ++ |.+|++.+|||++|
T Consensus 196 ~~~~~~f---y~VY~dLR~rG~vvk~G~KFG~DFlvY~~~P~-~Hs~~lV~v~~~~--~~------~~dl~~~~Rla~sV 263 (289)
T 2ohc_A 196 NHSASQV---DMVYSDLVGRGCIVKTGFKYGANFRVYLGRDS-QHAEYLVSVMPEE--ER------WYSISRGVRVASSV 263 (289)
T ss_dssp CTTSSHH---HHHHHHHHHTTCEEEECGGGTSSEEEESSTTC-SSCSEEEEECCSS--EE------HHHHHHHHHHHHHT
T ss_pred cccchhH---HHHHHHHHHCCCEEcccccCCceEEEECCCCC-CCccEEEEEEcCC--CC------HHHHhhheeeeeec
Confidence 1234566 99999999999999999999999999999999 9999999999876 44 99999999999999
Q ss_pred cCcEEEEEEe
Q 043831 192 AKTLLILTIN 201 (243)
Q Consensus 192 kK~llla~v~ 201 (243)
+|++|+|+++
T Consensus 264 kK~lila~v~ 273 (289)
T 2ohc_A 264 RKTMIYASIY 273 (289)
T ss_dssp TCEEEEEEEE
T ss_pred CcEEEEEEEE
Confidence 9999999998
No 10
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A
Probab=99.95 E-value=6.1e-28 Score=206.14 Aligned_cols=148 Identities=16% Similarity=0.035 Sum_probs=125.9
Q ss_pred cCcceEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHH
Q 043831 31 IQSEAHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQY 110 (243)
Q Consensus 31 ~~~~~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~ 110 (243)
..++..+.|--..|-|...-..+...++..||+..++ . |||+||+||++ +|+|++. +.+++++|++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~yG~~~~~------~--Ls~vEAlYL~~-~G~L~v~----~~~~~~eL~~~ 95 (190)
T 3ajv_A 29 AGCKAAARLGVEGVFVEECFDGSYCRNLERIGYLRKG------R--LEPLEAAYQAS-RGMLCMG----ETRGWAAAVEV 95 (190)
T ss_dssp TTCSEEEEEETTEEEEEEESSHHHHHHHHHHTSEETT------E--ECHHHHHHHHH-HTCEEET----TBCHHHHHHHH
T ss_pred ccchHhHhcCcceEeeecccCchheecccccccccCC------e--ECHHHHHHHHh-cCcEeec----CCCCHHHHHHH
Confidence 4567777887778888555455567788899998877 3 99999999995 7889872 46899999999
Q ss_pred HHhcCCccchhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhccc
Q 043831 111 MKAKKETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGG 190 (243)
Q Consensus 111 ~~~~~~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~s 190 (243)
+.. .+.|..+|.||+|||+|||+|+||+|| ||+||++ +..||+++ |+++++.++ |.+|++.+|+|++
T Consensus 96 ~~~-~~~f~~kY~VYkDLR~RGy~Vk~G~Kf--dflVY~r--g~~Ha~vl--Vl~E~~~i~------~~dL~~~vRla~s 162 (190)
T 3ajv_A 96 IAG-LGLSLDTALVYFDLRRKGRKPLVGVRR--GTLVYEH--GGRVYEVL--VLSEGYPLK------IGSLVEWSRGASM 162 (190)
T ss_dssp HHH-TTCCHHHHHHHHHHHHTTCCCEECSST--TEEEEEE--TTEEEEEE--EEETTCCEE------HHHHHHHHHHHHH
T ss_pred Hhh-CCCcceEEEeHHHHHhCCCEEeecCCC--CeEEEcC--CCCceEEE--EEcCCCccC------HHHHHHHHHHhhc
Confidence 877 779999999999999999999999988 5999999 68899954 667777655 9999999999999
Q ss_pred ccCcEEEEEEecCC
Q 043831 191 VAKTLLILTINKNG 204 (243)
Q Consensus 191 VkK~llla~v~~~~ 204 (243)
|+|++|||+|+.++
T Consensus 163 VrK~lVLAiVd~eG 176 (190)
T 3ajv_A 163 DNHSPIVAIVDRTG 176 (190)
T ss_dssp TTCEEEEEEECTTC
T ss_pred cccEEEEEEEcCCC
Confidence 99999999999766
No 11
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Probab=99.86 E-value=2.9e-22 Score=182.52 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=61.2
Q ss_pred EeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcCCcc
Q 043831 39 LAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKKETF 118 (243)
Q Consensus 39 L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~~~F 118 (243)
|.||.|+|..+.. |+++|||++.++ .|+|+|+||+||++ .|. +|. ++ + +++++.+...++.|
T Consensus 2 l~~~~v~~~~~~~----l~~~~yG~~~~~------~l~L~~~Ea~YL~~-~~~-~i~--~~--~--~~l~~~~~~~~~~~ 63 (305)
T 1r0v_A 2 IGGDFAVVKAKKS----LERRGFGVKRGD------KIYLHPLEVVYLQI-KGI-ESF--GE--L--EDVLSWAESRMEDF 63 (305)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred ccCCEEEEccccc----cccCcCCcccCC------EEEEeHHHHHHHHH-cCC-chH--hh--H--HHHHHHHHhcccch
Confidence 6789999944433 789999999877 79999999999996 444 765 22 4 89999998889999
Q ss_pred chhhhhchhhhhcCeEeccCCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEEE
Q 043831 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLIL 198 (243)
Q Consensus 119 ~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~llla 198 (243)
..+|.||+|||+|||+|+|| +||+||++ | |.|+++++.++ +.+|++.+|+|++|+ +|
T Consensus 64 ~~~y~VY~DLR~RGy~v~~g----~df~vy~k-p--------v~v~~E~~~i~------~~~l~~~~~~a~~v~----lA 120 (305)
T 1r0v_A 64 STYYFVYEDLRDRGNKVKIQ----GEFLLTKK-P--------YLPISERKTIR------MEEIAEKARNFDELR----LA 120 (305)
T ss_dssp HHHHHHHHHHHHTTCCCEEE----TTEEESSS-E--------EEEEETTSCBC------HHHHHHHTTTCSSCE----EE
T ss_pred hhheehHHHHHhCCcEeeeC----CcEEEecc-c--------eEEecCCceee------HHHHHHHhhhcccce----EE
Confidence 99999999999999999999 99999999 5 99999988766 999999999999998 99
Q ss_pred EEecCC
Q 043831 199 TINKNG 204 (243)
Q Consensus 199 ~v~~~~ 204 (243)
+||.++
T Consensus 121 vVd~eg 126 (305)
T 1r0v_A 121 VVDEES 126 (305)
T ss_dssp EECTTC
T ss_pred EEcCCC
Confidence 999876
No 12
>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A
Probab=99.77 E-value=2.4e-18 Score=155.57 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=102.1
Q ss_pred EEeCCeEEEeechh--hHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhcC
Q 043831 38 VLAGYSALLAVEAE--QTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAKK 115 (243)
Q Consensus 38 ~L~g~~V~v~~~~~--~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~~ 115 (243)
.+.+|.++. +... +....++..+|++.++ .|.|+|+||+||+ .+|.|+|. +++++++++..+
T Consensus 4 ~~~~~~~~~-v~~~~~~~~~~~~y~~G~~~~~------~l~L~p~Ea~YLl-~rg~l~i~----~~~~~~~~~~~~---- 67 (289)
T 2ohc_A 4 GICGSHVFF-IEDGKSKNYIIGKYKIGYLSGD------NLILDPYECLYLY-FKGRISFQ----NSDSFRDLFDTV---- 67 (289)
T ss_dssp EEETTEEEE-ESTTCCHHHHHHHHCCCEEETT------EEECCHHHHHHHH-HTTCEEES----STTHHHHHHHHS----
T ss_pred CccCCeEEE-ecCCCCCceEecceeeceEcCC------EEEEcHHHHHHHH-hcCCEEEe----cCCCHHHHHHhh----
Confidence 345555544 3332 4445567789999776 8999999999999 57889985 358999998766
Q ss_pred CccchhhhhchhhhhcCeEeccCCcCCccEEEeeC---CCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhccccc
Q 043831 116 ETFPLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRH---HPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVA 192 (243)
Q Consensus 116 ~~F~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~---~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVk 192 (243)
|..+|.||+|||+|||+|+|| |+|| ||++ +| |+|+|+++++.++ +.+|... +
T Consensus 68 --~~~~y~VY~DLr~rG~~v~~~---g~dF-vyp~~g~~P------~~V~v~~e~~~i~------~~~l~~~-------~ 122 (289)
T 2ohc_A 68 --TFDRYVAYEILKNKGYRVKED---SGLI-YFRKGTEKP------LSLRVMREYDRIQ------FSDLVEN-------P 122 (289)
T ss_dssp --CHHHHHHHHHHHTTTCEEEEE---TTEE-EEESSSSCC------EEEEECCTTCEEC------HHHHHSC-------C
T ss_pred --hhhhEeehhhHHhCCceEeeC---CccE-EeeCCCCCC------EEEEEeccCCccC------HHHHhhc-------C
Confidence 899999999999999999999 9999 9999 67 9999999988765 7777666 7
Q ss_pred CcEEEEEEecCC
Q 043831 193 KTLLILTINKNG 204 (243)
Q Consensus 193 K~llla~v~~~~ 204 (243)
|+ |+|+|+.++
T Consensus 123 K~-vlA~vdeeg 133 (289)
T 2ohc_A 123 VD-YYFTVDEEG 133 (289)
T ss_dssp CS-EEEEECTTS
T ss_pred ce-EEEEEcCCC
Confidence 88 999999887
No 13
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=99.71 E-value=1.7e-17 Score=131.73 Aligned_cols=88 Identities=9% Similarity=0.161 Sum_probs=75.0
Q ss_pred chhhhhchhhhhcCeEeccCCcCCccEEEeeCC-CCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccCcEEE
Q 043831 119 PLLYKAYSHLRKKNWVVRSGSQYGVDFVAYRHH-PSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAKTLLI 197 (243)
Q Consensus 119 ~~~y~VY~dLR~rG~vvksG~KFG~DF~vY~~~-P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK~lll 197 (243)
..+|.||+|||+|||+|+| +||+++ |+..||+|+|+++++++.++ +.+|++.+|+|++|+|++||
T Consensus 23 ~l~y~VYkDLR~RG~~vk~--------rvY~~~~pg~~hs~ylV~vl~e~~~i~------~~~L~~~vRla~sVrK~~Vl 88 (116)
T 2zyz_A 23 VLQEQVFKDLKSRGFKIIE--------QLDDKIFIAEKKERYLFYVMVEGVEVT------IQTLLSVINMGETLSMPVVL 88 (116)
T ss_dssp HHHHHHHHHHHTTTCEEEE--------EEETTEEEEESSSEEEEEEEETTCCBC------HHHHHHHHHHHHHHTCCEEE
T ss_pred ceeeHHHHHHHHCCCcccE--------EEcCCCCCCCCcccEEEEEecCCCccC------HHHHHHHHHHhhccceEEEE
Confidence 4479999999999999999 899985 99999999999999988766 99999999999999999999
Q ss_pred EEEecCCCCCCccccccceEEEEEEEeeecCCCCC
Q 043831 198 LTINKNGQGTATPSCLEQYAVEERTISRWSPEQCR 232 (243)
Q Consensus 198 a~v~~~~~~~~~p~~l~~~~V~E~~~~Rw~p~~~r 232 (243)
|+|+.++. |.=..+.|+.|++|-
T Consensus 89 AiVd~dg~------------ItYy~v~~~~~~~~~ 111 (116)
T 2zyz_A 89 ALVSNDGT------------VTYYYVRKIRLPRNI 111 (116)
T ss_dssp EEECTTSC------------EEEEEEEECCCCCCT
T ss_pred EEEcCCCC------------EEEEEEEEcccCccc
Confidence 99986552 344455666666653
No 14
>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}
Probab=99.63 E-value=7.2e-17 Score=150.80 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=107.6
Q ss_pred eEEEEeCCeEEEeechhhHHHHHhcccccccccCcccCceeeecHHHHHHhhhcCCceEEEcCCCCCCCHHHHHHHHHhc
Q 043831 35 AHAVLAGYSALLAVEAEQTELLNRACFGRHIVTAEKDKQWYQLGMEEGFYLCHSLKCLKIVGEDNSTKNDDELWQYMKAK 114 (243)
Q Consensus 35 ~~g~L~g~~V~v~~~~~~~~L~~~~~yG~~~~~~~~~~~~L~Lsl~EA~yL~~~~g~L~V~~~~~~~ls~~el~~~~~~~ 114 (243)
|...|.|++|+| .+.+...||++++||++.++ .++||++||+||++..+.+.+ +.+|..++++++.+.+..
T Consensus 5 ~~~~~~~~RV~v-~de~~~eL~~~GfFGrp~g~------~L~LS~~EAaYLl~~~krl~v-d~~gk~ls~eelle~~~~- 75 (395)
T 4fz2_A 5 LNINTKAKRISV-SDQSTIDILRNGYFGEYRAG------KLMLEVEEGLYLVDVRKAACT-DENSKPVSFNDIAGVFIK- 75 (395)
T ss_dssp EEEETTTTEEEE-CCHHHHHHHHHTTCSEEETT------EEEECHHHHHHHHHHSCCEEE-CTTSCBCCHHHHHHHTTT-
T ss_pred EeccccCCEEEE-ccHhHHHHHHcCCCCCccCC------ceEEEehhhhHHHHhCCeeee-ccCCCcCCHHHHHHHHHh-
Confidence 678889999999 55556669999999999887 799999999999965665555 568899999999887664
Q ss_pred CCccchhhhhchhhhhcCeEecc-CCcCCccEEEeeCCCCCCccceEEEEeeCCCcCCCCcCCChHHHHhhhhhcccccC
Q 043831 115 KETFPLLYKAYSHLRKKNWVVRS-GSQYGVDFVAYRHHPSLVHSEYAVLVLAEGEDGENGRLRVWSDIHCTVRLCGGVAK 193 (243)
Q Consensus 115 ~~~F~~~y~VY~dLR~rG~vvks-G~KFG~DF~vY~~~P~~~HS~~~V~v~~~~~~~~~~~~~s~~~l~~~~Rla~sVkK 193 (243)
.+.|..+|+||+|||+|||+|++ |++||.. | | +..+.... +..++.....+|.++.+
T Consensus 76 ~r~f~~kylVYkDLReRG~~Vk~~g~~fGe~-------~---~------VvsEr~~~------~~~~L~e~~~~A~~~~~ 133 (395)
T 4fz2_A 76 RKKLMARYFTFKDWRDRGLIIKSPGLRFGEE-------E---H------VQAKRYPS------SAINLKKYSVTGIFFPD 133 (395)
T ss_dssp STTHHHHHHHHHHHHHTTCCEESCCSCCCCG-------G---G------SCCEECCC------CCCCCTTCCEEEEEETT
T ss_pred chhHHHHHHHHHHHHhcCccccccccccccC-------C---c------cccccccc------chhhhhhhhhhhhcccc
Confidence 68899999999999999999998 5555422 1 1 22232222 24566667788999999
Q ss_pred cEEEEEEecC
Q 043831 194 TLLILTINKN 203 (243)
Q Consensus 194 ~llla~v~~~ 203 (243)
..++++++.+
T Consensus 134 q~i~~v~DeE 143 (395)
T 4fz2_A 134 DMVTVIDDDE 143 (395)
T ss_dssp TTEEEESCHH
T ss_pred cceEEEeccc
Confidence 9999988864
No 15
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=30.32 E-value=16 Score=27.05 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=17.2
Q ss_pred hhhhhchhhhhcCeEeccCCcCCcc
Q 043831 120 LLYKAYSHLRKKNWVVRSGSQYGVD 144 (243)
Q Consensus 120 ~~y~VY~dLR~rG~vvksG~KFG~D 144 (243)
++|+||++|++.||.- +.+.|+..
T Consensus 8 vN~LI~RYLqEsGf~h-sAf~f~~E 31 (90)
T 2xtc_A 8 VNFLVYRYLQESGFSH-SAFTFGIE 31 (90)
T ss_dssp HHHHHHHHHHHTTCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHH
Confidence 5899999999998754 33444444
No 16
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=28.38 E-value=77 Score=20.12 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhcCCccchhhhhchhhhhcCeE
Q 043831 100 STKNDDELWQYMKAKKETFPLLYKAYSHLRKKNWV 134 (243)
Q Consensus 100 ~~ls~~el~~~~~~~~~~F~~~y~VY~dLR~rG~v 134 (243)
..+|.+|+.+.+....+. ...=.||++|.+.|.+
T Consensus 18 ~~~t~~el~~~l~~~~~~-vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYK-VTQATVSRDIKELHLV 51 (64)
T ss_dssp CCCSHHHHHHHHHHTTCC-CCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHhCCC-cCHHHHHHHHHHcCCE
Confidence 368999999999765544 3456899999999987
Done!