BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043833
         (237 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
 pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
 pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
 pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
          Length = 315

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 72  LIFWLVVRPRIPEFHLTSLSVSNFSTNQ------SQVTGNWDAAIE 111
           L+  L V P    FH  SLSV NF+ N+      + +T N D  IE
Sbjct: 178 LLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIE 223


>pdb|1U6T|A Chain A, Crystal Structure Of The Human Sh3 Binding Glutamic-Rich
          Protein Like
          Length = 121

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 11/12 (91%), Positives = 11/12 (91%)

Query: 2  ENSRPATGYPAP 13
          ENSRPATGYP P
Sbjct: 54 ENSRPATGYPLP 65


>pdb|1WRY|A Chain A, Solution Structure Of The Sh3 Domain-Binding Glutamic
          Acid- Rich-Like Protein
          Length = 121

 Score = 27.3 bits (59), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 11/12 (91%), Positives = 11/12 (91%)

Query: 2  ENSRPATGYPAP 13
          ENSRPATGYP P
Sbjct: 62 ENSRPATGYPLP 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,865,540
Number of Sequences: 62578
Number of extensions: 197327
Number of successful extensions: 440
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 5
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)