BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043833
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 73 IFWLVVRPRIPEFHLTSLSVSNFS--TNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGI 130
I +L +RP+ + + + SV F+ N + + I++YNP K + V Y+ +
Sbjct: 57 ITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRIST 116
Query: 131 YYDGNYLTRTPLPPFSQDTRERTPLSAKFSVIDSYVERKVLDSINAERARGAVKFDFRLE 190
+ + + PF Q + T + + + + + + AE+++G ++ + +
Sbjct: 117 AHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTIEMEVYIT 176
Query: 191 AIAGFKYGGWRTRRRLVRVWCPDVPVNVSSKGSGSLVGGAR 231
A +K +R+RRR ++ C V +NV+ S SL G R
Sbjct: 177 ARVSYKTWIFRSRRRTLKAVCTPVMINVT---SSSLDGFQR 214
>sp|P63128|POK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein OS=Homo
sapiens PE=3 SV=3
Length = 1117
Score = 37.7 bits (86), Expect = 0.073, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNNLLRP 55
PPP + Y Y PP P PY QPPTRR N P
Sbjct: 222 PPPESQYGYPGMPPA--PQGRAPYPQPPTRRLNPTAP 256
>sp|P87889|GAK10_HUMAN HERV-K_5q33.3 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=4
Length = 666
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNNLLRP 55
PPP + Y Y PP P PY+QPPTRR N + P
Sbjct: 222 PPPESQYGYPGMPPA--PQGRAPYHQPPTRRLNPMAP 256
>sp|Q6BSD6|VPS27_DEBHA Vacuolar protein sorting-associated protein 27 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=VPS27 PE=3 SV=2
Length = 732
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 13/51 (25%)
Query: 10 YPAPTHNGYPPPNTAYP---------YSAAPPQSQPYSYPPYYQPPTRRNN 51
YP+ T N Y P YP Y +PPQ Q YS P Q PT NN
Sbjct: 506 YPSQTSNEYVP----YPVDQRVSSPQYQQSPPQFQNYSSPGLSQQPTGYNN 552
>sp|Q29W20|EGR1_BOVIN Early growth response protein 1 OS=Bos taurus GN=EGR1 PE=2 SV=1
Length = 540
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 7 ATGYPAPTHNGYPPPNTAYPYSAAPP 32
++ YP+P HNG+P P+ A YS+ PP
Sbjct: 476 SSTYPSPVHNGFPSPSVATTYSSVPP 501
>sp|P62685|GAK6_HUMAN HERV-K_8p23.1 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 647
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNN 51
PPP + Y Y PP P PY QPPTRR N
Sbjct: 222 PPPESQYGYPGMPPA--PQGREPYPQPPTRRLN 252
>sp|P63130|GAK12_HUMAN HERV-K_1q22 provirus ancestral Gag polyprotein OS=Homo sapiens PE=3
SV=2
Length = 666
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNN 51
PPP + Y Y PP P PY QPPTRR N
Sbjct: 222 PPPESQYGYPGMPPA--PQGRAPYPQPPTRRLN 252
>sp|P63126|GAK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 666
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNNLLRP 55
PPP + Y Y PP P PY QPPTRR N P
Sbjct: 222 PPPESQYGYPGMPPA--PQGRAPYPQPPTRRLNPTAP 256
>sp|Q7LDI9|GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag polyprotein OS=Homo sapiens
GN=ERVK6 PE=1 SV=3
Length = 666
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNNLLRP 55
PPP + Y Y PP P PY QPPTRR N P
Sbjct: 222 PPPESQYGYPGMPPA--PQGRAPYPQPPTRRLNPTAP 256
>sp|P62683|GAK1_HUMAN HERV-K_12q14.1 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 666
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNNLLRP 55
PPP + Y Y PP P PY QPPTRR N P
Sbjct: 222 PPPESQYGYPGMPPA--PQGRAPYPQPPTRRLNPTAP 256
>sp|P63145|GAK11_HUMAN HERV-K_22q11.21 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 666
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNN 51
PPP + Y Y PP P PY QPPTRR N
Sbjct: 222 PPPESQYGYPGMPPA--PQGRAPYPQPPTRRLN 252
>sp|P62684|GAK5_HUMAN HERV-K_19p13.11 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 666
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 19 PPPNTAYPYSAAPPQSQPYSYPPYYQPPTRRNN 51
PPP + Y Y PP P PY QPPTRR N
Sbjct: 222 PPPESQYGYPGMPPA--PQGRAPYPQPPTRRLN 252
>sp|O29350|Y912_ARCFU Uncharacterized protein AF_0912 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0912 PE=4 SV=1
Length = 565
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 77 VVRPRIPEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNY 136
VV+P+I EF L +L Q + +E+ NP +++ Y +YY+
Sbjct: 113 VVKPKIKEFELKNLVY--------QSRTELEVLVESANP-ASLKLRLYGNNVDLYYEE-- 161
Query: 137 LTRTPLPPFSQDTRERTPL-SAKFSVIDSYVERKVLDSINAERARGAVKFDFRLEAIAGF 195
+ D E + + SAKF + V + D +A + G D +LE
Sbjct: 162 ---------TADYEEESNVYSAKFDLNLREVYERTRDIADAVKP-GKYILDLKLE----- 206
Query: 196 KYGG--WRTRRRLVRVWCPDVPVNVSSK 221
YGG W +RR V V P+V V+ K
Sbjct: 207 -YGGKVWDSRRVTVSVVKPEVAVSAPEK 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,468,151
Number of Sequences: 539616
Number of extensions: 4011470
Number of successful extensions: 17870
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 16261
Number of HSP's gapped (non-prelim): 1590
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)