Query 043833
Match_columns 237
No_of_seqs 143 out of 867
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 2.1E-35 4.5E-40 251.0 23.9 181 47-236 31-216 (219)
2 PF03168 LEA_2: Late embryogen 99.4 4.4E-13 9.5E-18 99.5 8.6 97 109-211 1-101 (101)
3 smart00769 WHy Water Stress an 98.5 2.4E-06 5.1E-11 63.9 11.3 83 100-188 11-95 (100)
4 PF07092 DUF1356: Protein of u 98.0 0.00021 4.5E-09 61.3 14.1 84 78-162 96-182 (238)
5 COG5608 LEA14-like dessication 97.2 0.059 1.3E-06 43.2 16.3 92 81-181 31-123 (161)
6 PF12751 Vac7: Vacuolar segreg 97.1 0.0033 7.2E-08 57.3 9.2 38 101-139 345-382 (387)
7 PLN03160 uncharacterized prote 96.5 0.047 1E-06 46.6 11.4 103 44-153 31-146 (219)
8 COG5178 PRP8 U5 snRNP spliceos 75.9 2.6 5.7E-05 44.0 3.3 33 180-212 319-354 (2365)
9 KOG1924 RhoA GTPase effector D 74.1 5.7 0.00012 39.9 5.0 6 5-10 533-538 (1102)
10 PRK10893 lipopolysaccharide ex 72.2 56 0.0012 27.2 10.6 30 79-109 37-66 (192)
11 TIGR02588 conserved hypothetic 72.2 44 0.00095 25.9 10.2 49 63-117 12-62 (122)
12 PF12734 CYSTM: Cysteine-rich 71.5 12 0.00026 22.7 4.3 14 48-61 15-28 (37)
13 PF14155 DUF4307: Domain of un 66.8 53 0.0012 24.8 10.5 79 72-162 20-101 (112)
14 KOG3950 Gamma/delta sarcoglyca 65.9 22 0.00048 30.9 6.3 23 101-123 105-127 (292)
15 COG4698 Uncharacterized protei 65.2 7.8 0.00017 32.1 3.3 40 50-91 8-47 (197)
16 PF11395 DUF2873: Protein of u 64.8 4 8.7E-05 24.8 1.2 20 60-79 14-33 (43)
17 PF11906 DUF3426: Protein of u 64.6 41 0.00089 26.3 7.4 57 85-142 48-106 (149)
18 COG1580 FliL Flagellar basal b 63.0 32 0.00069 27.9 6.5 26 53-78 17-42 (159)
19 KOG2236 Uncharacterized conser 62.0 13 0.00029 35.0 4.6 7 39-45 455-461 (483)
20 PRK05529 cell division protein 61.9 17 0.00036 31.7 5.0 43 82-125 58-128 (255)
21 PRK13150 cytochrome c-type bio 60.2 85 0.0018 25.5 8.4 83 88-177 58-146 (159)
22 PF06495 Transformer: Fruit fl 59.5 15 0.00034 30.1 4.1 15 17-31 138-152 (182)
23 PF14927 Neurensin: Neurensin 57.8 17 0.00036 28.9 3.9 29 48-76 38-67 (140)
24 PF07787 DUF1625: Protein of u 56.3 14 0.0003 31.9 3.5 11 70-80 238-248 (248)
25 COG2332 CcmE Cytochrome c-type 55.4 58 0.0013 26.2 6.6 64 106-176 72-139 (153)
26 PF11322 DUF3124: Protein of u 53.4 82 0.0018 24.5 7.0 54 100-156 19-74 (125)
27 PRK07021 fliL flagellar basal 52.3 73 0.0016 25.6 7.0 18 120-137 77-94 (162)
28 PF12505 DUF3712: Protein of u 51.9 1E+02 0.0022 23.4 9.2 62 136-203 2-65 (125)
29 KOG3927 Na+/K+ ATPase, beta su 50.6 12 0.00025 33.6 2.2 42 47-89 39-83 (300)
30 PF10907 DUF2749: Protein of u 49.1 19 0.00042 24.7 2.6 16 66-81 13-28 (66)
31 COG5353 Uncharacterized protei 48.6 8.9 0.00019 30.7 1.0 31 51-81 4-34 (161)
32 PRK06531 yajC preprotein trans 46.4 11 0.00023 28.9 1.2 11 72-82 14-24 (113)
33 PF09624 DUF2393: Protein of u 46.4 1.4E+02 0.003 23.3 8.8 60 72-139 35-96 (149)
34 PF06092 DUF943: Enterobacteri 46.0 14 0.00031 29.9 1.9 17 64-80 12-28 (157)
35 PF07423 DUF1510: Protein of u 45.1 11 0.00024 32.2 1.1 6 172-177 153-158 (217)
36 PHA02680 ORF090 IMV phosphoryl 44.6 47 0.001 24.2 4.1 35 50-84 44-78 (91)
37 PF09865 DUF2092: Predicted pe 43.9 1.8E+02 0.0039 24.7 8.3 54 84-138 18-74 (214)
38 KOG0810 SNARE protein Syntaxin 43.7 7 0.00015 35.0 -0.3 16 47-62 267-282 (297)
39 PF12751 Vac7: Vacuolar segreg 43.6 20 0.00043 33.1 2.6 12 49-60 296-307 (387)
40 PRK13183 psbN photosystem II r 43.0 33 0.00072 21.9 2.8 24 57-80 9-32 (46)
41 PF09604 Potass_KdpF: F subuni 42.5 14 0.0003 20.5 0.9 19 63-81 5-23 (25)
42 PHA02692 hypothetical protein; 42.5 27 0.00059 24.3 2.6 14 48-61 38-51 (70)
43 PF01102 Glycophorin_A: Glycop 42.4 14 0.0003 28.7 1.2 27 63-89 74-101 (122)
44 PF04790 Sarcoglycan_1: Sarcog 41.8 31 0.00067 30.3 3.5 18 101-118 83-100 (264)
45 KOG2322 N-methyl-D-aspartate r 41.5 64 0.0014 27.9 5.2 6 49-54 44-49 (237)
46 PHA02844 putative transmembran 39.8 54 0.0012 23.1 3.7 27 50-76 43-69 (75)
47 COG1589 FtsQ Cell division sep 39.7 34 0.00074 29.8 3.5 35 61-95 36-70 (269)
48 PF02468 PsbN: Photosystem II 38.5 29 0.00062 21.9 2.0 22 59-80 8-29 (43)
49 CHL00020 psbN photosystem II p 38.1 38 0.00083 21.3 2.5 23 58-80 7-29 (43)
50 PF12505 DUF3712: Protein of u 37.9 63 0.0014 24.6 4.3 27 102-129 98-124 (125)
51 PHA02819 hypothetical protein; 37.1 45 0.00097 23.2 2.9 24 52-75 43-66 (71)
52 PF05399 EVI2A: Ectropic viral 36.8 41 0.00089 28.6 3.3 23 51-73 127-149 (227)
53 PTZ00116 signal peptidase; Pro 36.6 88 0.0019 26.0 5.2 44 80-123 36-86 (185)
54 PF02009 Rifin_STEVOR: Rifin/s 36.3 16 0.00035 32.7 0.9 15 65-79 266-280 (299)
55 PF03100 CcmE: CcmE; InterPro 35.5 65 0.0014 25.0 4.1 16 110-125 75-90 (131)
56 PF08113 CoxIIa: Cytochrome c 35.1 24 0.00052 20.9 1.1 13 63-75 11-23 (34)
57 PF15145 DUF4577: Domain of un 34.8 58 0.0013 24.9 3.5 25 56-80 64-88 (128)
58 PF05545 FixQ: Cbb3-type cytoc 34.2 20 0.00044 22.7 0.9 13 70-82 22-34 (49)
59 PRK13159 cytochrome c-type bio 34.2 2.5E+02 0.0054 22.7 8.5 82 88-177 52-139 (155)
60 PF15012 DUF4519: Domain of un 33.7 44 0.00095 22.2 2.4 16 66-81 41-56 (56)
61 PF04573 SPC22: Signal peptida 33.4 1.1E+02 0.0024 25.1 5.3 12 77-88 31-42 (175)
62 PRK13254 cytochrome c-type bio 33.1 2.1E+02 0.0046 22.8 6.7 63 108-177 73-139 (148)
63 PRK15290 lfpB fimbrial chapero 32.8 3.2E+02 0.007 23.6 8.6 22 140-161 88-110 (243)
64 PF06143 Baculo_11_kDa: Baculo 32.8 31 0.00067 25.0 1.7 9 47-55 27-35 (84)
65 PF04478 Mid2: Mid2 like cell 32.7 36 0.00079 27.4 2.2 22 64-85 61-82 (154)
66 TIGR02115 potass_kdpF K+-trans 32.3 12 0.00027 20.9 -0.3 19 63-81 4-22 (26)
67 PRK14759 potassium-transportin 32.2 27 0.00059 20.0 1.0 19 63-81 9-27 (29)
68 PF06024 DUF912: Nucleopolyhed 31.9 66 0.0014 23.8 3.4 18 62-79 70-88 (101)
69 PF07423 DUF1510: Protein of u 31.7 38 0.00082 28.9 2.3 12 56-67 15-26 (217)
70 KOG1546 Metacaspase involved i 31.2 45 0.00097 30.3 2.8 20 24-44 43-62 (362)
71 cd01324 cbb3_Oxidase_CcoQ Cyto 31.0 37 0.00079 21.8 1.6 17 66-82 19-35 (48)
72 PRK08455 fliL flagellar basal 30.8 83 0.0018 26.0 4.2 59 56-115 20-116 (182)
73 PF11239 DUF3040: Protein of u 30.6 59 0.0013 23.0 2.9 6 64-69 55-60 (82)
74 PF06637 PV-1: PV-1 protein (P 29.3 78 0.0017 29.4 4.0 15 101-115 83-97 (442)
75 TIGR01478 STEVOR variant surfa 29.1 20 0.00043 31.8 0.2 12 66-77 270-281 (295)
76 PRK11486 flagellar biosynthesi 28.9 37 0.0008 26.4 1.7 22 56-77 18-39 (124)
77 PF00927 Transglut_C: Transglu 28.9 2.1E+02 0.0045 20.8 5.8 58 101-159 12-74 (107)
78 PRK13165 cytochrome c-type bio 28.7 3.2E+02 0.0069 22.2 10.2 82 88-176 58-145 (160)
79 PF05170 AsmA: AsmA family; I 28.6 2.4E+02 0.0051 27.3 7.6 95 82-192 439-534 (604)
80 PRK05886 yajC preprotein trans 28.1 26 0.00056 26.6 0.7 13 70-82 14-26 (109)
81 PTZ00370 STEVOR; Provisional 27.3 23 0.0005 31.5 0.3 11 67-77 267-277 (296)
82 PF10614 CsgF: Type VIII secre 27.0 42 0.00092 26.7 1.7 10 76-85 24-33 (142)
83 KOG4264 Nucleo-cytoplasmic pro 26.9 87 0.0019 30.4 4.0 15 26-40 575-589 (694)
84 COG5294 Uncharacterized protei 26.8 1.5E+02 0.0032 22.6 4.5 16 103-118 51-66 (113)
85 PF09677 TrbI_Ftype: Type-F co 26.7 48 0.001 25.2 1.9 17 69-85 17-33 (111)
86 PHA03054 IMV membrane protein; 26.6 67 0.0015 22.4 2.4 10 52-61 45-54 (72)
87 PF11688 DUF3285: Protein of u 26.3 1.1E+02 0.0024 19.2 3.1 22 47-68 18-39 (45)
88 PF06143 Baculo_11_kDa: Baculo 26.3 73 0.0016 23.1 2.7 18 52-69 36-53 (84)
89 PF09911 DUF2140: Uncharacteri 26.2 83 0.0018 26.1 3.4 28 54-83 4-31 (187)
90 TIGR03726 strep_RK_lipo putati 26.2 76 0.0016 18.9 2.3 20 48-67 4-23 (34)
91 PF11837 DUF3357: Domain of un 26.2 22 0.00048 26.7 0.0 20 51-70 29-48 (106)
92 PHA02898 virion envelope prote 26.2 71 0.0015 23.3 2.6 33 52-84 45-78 (92)
93 PHA03049 IMV membrane protein; 26.1 35 0.00076 23.5 0.9 20 60-79 5-24 (68)
94 PHA02650 hypothetical protein; 26.1 68 0.0015 22.9 2.4 26 51-76 45-70 (81)
95 COG4736 CcoQ Cbb3-type cytochr 26.0 32 0.00069 23.3 0.7 13 70-82 22-34 (60)
96 PF10177 DUF2371: Uncharacteri 26.0 66 0.0014 25.6 2.6 26 54-81 39-64 (141)
97 PHA03048 IMV membrane protein; 25.6 88 0.0019 22.9 3.0 28 53-80 45-73 (93)
98 COG1862 YajC Preprotein transl 25.4 33 0.00071 25.5 0.8 13 70-82 19-31 (97)
99 PF06667 PspB: Phage shock pro 24.7 31 0.00068 24.4 0.5 10 70-79 16-25 (75)
100 PTZ00382 Variant-specific surf 23.8 59 0.0013 23.9 1.9 14 65-78 78-91 (96)
101 PF12606 RELT: Tumour necrosis 23.7 39 0.00084 22.0 0.8 29 60-88 6-34 (50)
102 PF05961 Chordopox_A13L: Chord 23.6 39 0.00085 23.3 0.8 20 60-79 5-24 (68)
103 COG5178 PRP8 U5 snRNP spliceos 23.2 57 0.0012 34.8 2.2 18 20-38 15-32 (2365)
104 KOG2927 Membrane component of 22.7 55 0.0012 30.0 1.8 36 60-95 232-272 (372)
105 PF12321 DUF3634: Protein of u 22.6 46 0.00099 25.3 1.1 16 72-87 11-28 (108)
106 PF01299 Lamp: Lysosome-associ 22.5 83 0.0018 27.9 3.0 16 67-82 284-299 (306)
107 TIGR02744 TrbI_Ftype type-F co 22.3 1.1E+02 0.0024 23.4 3.1 32 56-87 5-36 (112)
108 COG3190 FliO Flagellar biogene 22.2 45 0.00098 26.4 1.1 20 60-79 28-47 (137)
109 PF13800 Sigma_reg_N: Sigma fa 22.2 54 0.0012 23.8 1.4 20 49-68 10-29 (96)
110 PF12428 DUF3675: Protein of u 21.5 1.1E+02 0.0025 23.4 3.1 22 39-60 50-71 (118)
111 PF13396 PLDc_N: Phospholipase 21.4 1.2E+02 0.0026 18.6 2.7 16 66-81 31-46 (46)
112 PRK12785 fliL flagellar basal 21.2 2.3E+02 0.0049 22.9 5.1 16 121-136 86-101 (166)
113 PF01708 Gemini_mov: Geminivir 21.1 32 0.00069 25.2 -0.0 6 76-81 64-69 (91)
114 PF11770 GAPT: GRB2-binding ad 21.0 1.1E+02 0.0024 24.6 3.0 19 62-80 18-36 (158)
115 PHA03160 hypothetical protein; 20.5 1.9E+02 0.0042 27.7 5.0 9 3-11 277-285 (499)
116 PF09753 Use1: Membrane fusion 20.5 84 0.0018 27.1 2.5 9 55-63 228-236 (251)
117 PF05454 DAG1: Dystroglycan (D 20.3 34 0.00074 30.5 0.0 13 63-75 158-170 (290)
118 PTZ00046 rifin; Provisional 20.2 38 0.00082 31.1 0.3 14 67-80 327-340 (358)
119 KOG3385 V-SNARE [Intracellular 20.2 89 0.0019 24.0 2.2 11 53-63 96-106 (118)
120 PF09307 MHC2-interact: CLIP, 20.0 35 0.00075 26.2 0.0 33 47-80 23-58 (114)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=251.00 Aligned_cols=181 Identities=17% Similarity=0.296 Sum_probs=152.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhheeeeeeCCCcEEEEEeeEEeeeccCC-----CceeEEEEEEEEEeCCCceeeE
Q 043833 47 TRRNNLLRPLVVAAVAVTVILGCALLIFWLVVRPRIPEFHLTSLSVSNFSTNQ-----SQVTGNWDAAIEAYNPNKKMRV 121 (237)
Q Consensus 47 ~~r~~~~r~l~~~l~~l~lllgi~~~i~~lvlrP~~P~~~v~s~~v~~~n~s~-----s~l~~~~~~~l~v~NPN~k~~i 121 (237)
.+|++|++|+++++++++++++++++++|++||||+|+|+|++++|++|++++ ..+|++++++++++|||+ ++|
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~ 109 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASF 109 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeE
Confidence 34555666666665666666777888899999999999999999999999853 268888999999999998 999
Q ss_pred EEeceEEEEEECCEEEeeeecCCceeCCCCceEEEEEEEEeeeecChHHHHHHHHHhcCCeEEEEEEEEEEEEEEEeEEE
Q 043833 122 SYYDVVSGIYYDGNYLTRTPLPPFSQDTRERTPLSAKFSVIDSYVERKVLDSINAERARGAVKFDFRLEAIAGFKYGGWR 201 (237)
Q Consensus 122 ~Y~~~~~~v~Y~g~~lg~~~lp~F~q~~~~~t~v~~~l~~~~~~l~~~~~~~l~~d~~~g~v~~~v~v~~~vr~k~g~~~ 201 (237)
+|++++++++|+|+.+|++.+|+|+|++++++.+++++...+..+.+ ..+|.+|+.+|.++|+++++.++++++|++.
T Consensus 110 ~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~ 187 (219)
T PLN03160 110 KYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKVKILKII 187 (219)
T ss_pred EEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEEEEEEEE
Confidence 99999999999999999999999999999999999998766544432 2468899999999999999999999999999
Q ss_pred EeeeeEEEECCceeEeeccCCCcccccCCCCceec
Q 043833 202 TRRRLVRVWCPDVPVNVSSKGSGSLVGGARKCRVS 236 (237)
Q Consensus 202 s~~~~~~v~C~~v~v~~~~~~~g~~~~~~~~C~v~ 236 (237)
++++.++++|+ +.|.+++. ..++++|+..
T Consensus 188 k~~v~~~v~C~-v~V~~~~~-----~i~~~~C~~~ 216 (219)
T PLN03160 188 KKHVVVKMNCT-MTVNITSQ-----AIQGQKCKRH 216 (219)
T ss_pred EEEEEEEEEeE-EEEECCCC-----EEeccEeccc
Confidence 99999999998 77766332 4456789865
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.44 E-value=4.4e-13 Score=99.48 Aligned_cols=97 Identities=27% Similarity=0.425 Sum_probs=73.0
Q ss_pred EEEEeCCCceeeEEEeceEEEEEECCEEEe-eeecCCceeCCCCceEEEEEEEEeeeecChHHHHHHHHHhcCCeEEEEE
Q 043833 109 AIEAYNPNKKMRVSYYDVVSGIYYDGNYLT-RTPLPPFSQDTRERTPLSAKFSVIDSYVERKVLDSINAERARGAVKFDF 187 (237)
Q Consensus 109 ~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg-~~~lp~F~q~~~~~t~v~~~l~~~~~~l~~~~~~~l~~d~~~g~v~~~v 187 (237)
+|+++|||. ++++|++++++++|+|..+| ....++|.|++++++.+.+.+..+...+ .+.+.++. .|...+++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence 589999999 99999999999999999999 7889999999999999999888775444 44566666 66777777
Q ss_pred EEEEEEEEEE-eE--EEEeeeeEEEEC
Q 043833 188 RLEAIAGFKY-GG--WRTRRRLVRVWC 211 (237)
Q Consensus 188 ~v~~~vr~k~-g~--~~s~~~~~~v~C 211 (237)
.+++++++++ +. +.+.+++++.+|
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeEC
Confidence 7777888884 33 333444444444
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.51 E-value=2.4e-06 Score=63.90 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=65.8
Q ss_pred CceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEeeeecC-CceeCCCCceEEEEEEEEeeeecChHHHHHHHHHh
Q 043833 100 SQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLP-PFSQDTRERTPLSAKFSVIDSYVERKVLDSINAER 178 (237)
Q Consensus 100 s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~lp-~F~q~~~~~t~v~~~l~~~~~~l~~~~~~~l~~d~ 178 (237)
+.++.++.+.+++.|||. +.+.++.++..++++|..+|++..+ ++..++++++.+.+.+... ... ...+..++
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~----~~~~~~~l 84 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL----AEALIWHI 84 (100)
T ss_pred cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH----hHHHHHhh
Confidence 367899999999999998 9999999999999999999999986 7999999999999988873 222 23344554
Q ss_pred cCC-eEEEEEE
Q 043833 179 ARG-AVKFDFR 188 (237)
Q Consensus 179 ~~g-~v~~~v~ 188 (237)
.+| .++++++
T Consensus 85 ~~~~~~~y~l~ 95 (100)
T smart00769 85 ANGEEIPYRLD 95 (100)
T ss_pred ccCCCccEEEE
Confidence 444 3444443
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.04 E-value=0.00021 Score=61.27 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=62.9
Q ss_pred eeCCCcEEEEEeeEEeee--ccCCCceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEeeeecCCc-eeCCCCceE
Q 043833 78 VRPRIPEFHLTSLSVSNF--STNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLPPF-SQDTRERTP 154 (237)
Q Consensus 78 lrP~~P~~~v~s~~v~~~--n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~lp~F-~q~~~~~t~ 154 (237)
|=|+.-.++-.++..... +-+.+.+..++.-.|.++|+|. ..+.-.+++++++|....+|.+..... ..++++.+.
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q 174 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQ 174 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCce
Confidence 346665555444444333 3344579999999999999996 999999999999999999999877643 667787777
Q ss_pred EEEEEEEe
Q 043833 155 LSAKFSVI 162 (237)
Q Consensus 155 v~~~l~~~ 162 (237)
+..++...
T Consensus 175 ~~~tV~t~ 182 (238)
T PF07092_consen 175 VNYTVKTT 182 (238)
T ss_pred EEEEeeEE
Confidence 77766553
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.23 E-value=0.059 Score=43.16 Aligned_cols=92 Identities=10% Similarity=0.162 Sum_probs=69.7
Q ss_pred CCcEEEEEeeEEeeeccCCCceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEeeeec-CCceeCCCCceEEEEEE
Q 043833 81 RIPEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPL-PPFSQDTRERTPLSAKF 159 (237)
Q Consensus 81 ~~P~~~v~s~~v~~~n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~l-p~F~q~~~~~t~v~~~l 159 (237)
+.|.+.--.+...... .....+-.++.++|||. +.+--..++..++-+|..+|++.. .++..++++...+.+.+
T Consensus 31 ~~p~ve~~ka~wGkvt----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l 105 (161)
T COG5608 31 KKPGVESMKAKWGKVT----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPL 105 (161)
T ss_pred CCCCceEEEEEEEEEe----ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEE
Confidence 5666666666655542 23467888999999998 999999999999999999999764 57999999999999999
Q ss_pred EEeeeecChHHHHHHHHHhcCC
Q 043833 160 SVIDSYVERKVLDSINAERARG 181 (237)
Q Consensus 160 ~~~~~~l~~~~~~~l~~d~~~g 181 (237)
..+...+.+. +...+.+|
T Consensus 106 ~~d~~~~ke~----w~~hi~ng 123 (161)
T COG5608 106 RLDNSKIKEW----WVTHIENG 123 (161)
T ss_pred EEehHHHHHH----HHHHhhcc
Confidence 8875444333 44444445
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.09 E-value=0.0033 Score=57.28 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=32.6
Q ss_pred ceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEee
Q 043833 101 QVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTR 139 (237)
Q Consensus 101 ~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~ 139 (237)
.-..-||+++.+.|||- +.|..++.++.|+-+...++.
T Consensus 345 ~qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 345 EQELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred cceEEEeeEEEEECCCe-EEEEeccceeeeEecCCccCc
Confidence 56688999999999997 999999999999987665553
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=96.51 E-value=0.047 Score=46.58 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=64.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhheeeeeeCC--CcEEEEEeeEEee-------eccCC----CceeEEEEEEE
Q 043833 44 QPPTRRNNLLRPLVVAAVAVTVILGCALLIFWLVVRPR--IPEFHLTSLSVSN-------FSTNQ----SQVTGNWDAAI 110 (237)
Q Consensus 44 ~~~~~r~~~~r~l~~~l~~l~lllgi~~~i~~lvlrP~--~P~~~v~s~~v~~-------~n~s~----s~l~~~~~~~l 110 (237)
++++++.+||.|+|.+++++++++++++++++=-=.|+ .-.++++++.+.. +|++- +.-|.|. +.+
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~ 109 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASF 109 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeE
Confidence 57789999999999998888888888888776556663 4556666655432 23221 1224455 455
Q ss_pred EEeCCCceeeEEEeceEEEEEECCEEEeeeecCCceeCCCCce
Q 043833 111 EAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLPPFSQDTRERT 153 (237)
Q Consensus 111 ~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~lp~F~q~~~~~t 153 (237)
.-+ |..+.++|+...+ +...+..+.++++.+...+.+
T Consensus 110 ~Y~--~~~~~v~Y~g~~v----G~a~~p~g~~~ar~T~~l~~t 146 (219)
T PLN03160 110 KYS--NTTTTIYYGGTVV----GEARTPPGKAKARRTMRMNVT 146 (219)
T ss_pred EEc--CeEEEEEECCEEE----EEEEcCCcccCCCCeEEEEEE
Confidence 554 3458899987543 233455555666655555555
No 8
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.91 E-value=2.6 Score=43.97 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=18.3
Q ss_pred CCeEEEEEEEEEEEEEEE---eEEEEeeeeEEEECC
Q 043833 180 RGAVKFDFRLEAIAGFKY---GGWRTRRRLVRVWCP 212 (237)
Q Consensus 180 ~g~v~~~v~v~~~vr~k~---g~~~s~~~~~~v~C~ 212 (237)
+|-+.+-.+.-.+-.+++ |.+.++.+.+.+.|.
T Consensus 319 n~i~rii~r~pi~~ey~vafp~lynsrprsvav~~y 354 (2365)
T COG5178 319 NGIVRIIRRPPIDDEYPVAFPGLYNSRPRSVAVECY 354 (2365)
T ss_pred cceeeEEEeCCcCCccccccchhhcCcccceeeecc
Confidence 344444444333333333 566667788888886
No 9
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=74.12 E-value=5.7 Score=39.94 Aligned_cols=6 Identities=50% Similarity=0.600 Sum_probs=2.3
Q ss_pred CCCCCC
Q 043833 5 RPATGY 10 (237)
Q Consensus 5 ~~~~~~ 10 (237)
.|+||-
T Consensus 533 ~pp~gG 538 (1102)
T KOG1924|consen 533 LPPTGG 538 (1102)
T ss_pred CCCCCC
Confidence 333343
No 10
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=72.24 E-value=56 Score=27.18 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=22.4
Q ss_pred eCCCcEEEEEeeEEeeeccCCCceeEEEEEE
Q 043833 79 RPRIPEFHLTSLSVSNFSTNQSQVTGNWDAA 109 (237)
Q Consensus 79 rP~~P~~~v~s~~v~~~n~s~s~l~~~~~~~ 109 (237)
.++.|.|.+++++...|+.++ .++..+.+.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G-~l~y~l~a~ 66 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG-ALSYKLVAQ 66 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC-CEEEEEEec
Confidence 467899999999999998864 455555443
No 11
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=72.19 E-value=44 Score=25.92 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhee--eeeeCCCcEEEEEeeEEeeeccCCCceeEEEEEEEEEeCCCc
Q 043833 63 VTVILGCALLIFW--LVVRPRIPEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNK 117 (237)
Q Consensus 63 l~lllgi~~~i~~--lvlrP~~P~~~v~s~~v~~~n~s~s~l~~~~~~~l~v~NPN~ 117 (237)
++++++++.+++| +.-+.+.|.+++......+ .....+-+-++++|--.
T Consensus 12 ~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r------~~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 12 TLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER------MQTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE------EeCCEEEEEEEEEeCCC
Confidence 3445555556655 5556789999998877765 23345667777888665
No 12
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=71.49 E-value=12 Score=22.68 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=7.5
Q ss_pred CCCcchHHHHHHHH
Q 043833 48 RRNNLLRPLVVAAV 61 (237)
Q Consensus 48 ~r~~~~r~l~~~l~ 61 (237)
+...|+...+++|.
T Consensus 15 ~~~g~l~gClaaLc 28 (37)
T PF12734_consen 15 GGDGCLAGCLAALC 28 (37)
T ss_pred CCCChHHHHHHHHH
Confidence 34456666555543
No 13
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=66.79 E-value=53 Score=24.82 Aligned_cols=79 Identities=15% Similarity=0.303 Sum_probs=36.1
Q ss_pred hheeeeee-CCCcEEEEEeeEEeeeccCCCceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEee--eecCCceeC
Q 043833 72 LIFWLVVR-PRIPEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTR--TPLPPFSQD 148 (237)
Q Consensus 72 ~i~~lvlr-P~~P~~~v~s~~v~~~n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~--~~lp~F~q~ 148 (237)
++.|+.+. -..+.++-+.+..+-. +++.+..+|+++ - +|....--.-. ...+++..+|. ..+|+ +
T Consensus 20 ~~~w~~~~~~~~~~v~~~~~gf~vv--~d~~v~v~f~Vt--r-~~~~~a~C~Vr----A~~~d~aeVGrreV~vp~---~ 87 (112)
T PF14155_consen 20 VVAWFGYSQFGSPPVSAEVIGFEVV--DDSTVEVTFDVT--R-DPGRPAVCIVR----ALDYDGAEVGRREVLVPP---S 87 (112)
T ss_pred HHhHhhhhhccCCCceEEEEEEEEC--CCCEEEEEEEEE--E-CCCCCEEEEEE----EEeCCCCEEEEEEEEECC---C
Confidence 44455554 4455554444433321 233444444433 2 26552222222 23467778885 45666 3
Q ss_pred CCCceEEEEEEEEe
Q 043833 149 TRERTPLSAKFSVI 162 (237)
Q Consensus 149 ~~~~t~v~~~l~~~ 162 (237)
...+..+..++...
T Consensus 88 ~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 88 GERTVRVTVTVRTT 101 (112)
T ss_pred CCcEEEEEEEEEec
Confidence 34444455555443
No 14
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=65.95 E-value=22 Score=30.89 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.7
Q ss_pred ceeEEEEEEEEEeCCCceeeEEE
Q 043833 101 QVTGNWDAAIEAYNPNKKMRVSY 123 (237)
Q Consensus 101 ~l~~~~~~~l~v~NPN~k~~i~Y 123 (237)
.+.-.=++++.++|||.++.-++
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EEEeccCeeEEccCCCCceeeeE
Confidence 45667789999999998765444
No 15
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.18 E-value=7.8 Score=32.06 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=25.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhheeeeeeCCCcEEEEEeeE
Q 043833 50 NNLLRPLVVAAVAVTVILGCALLIFWLVVRPRIPEFHLTSLS 91 (237)
Q Consensus 50 ~~~~r~l~~~l~~l~lllgi~~~i~~lvlrP~~P~~~v~s~~ 91 (237)
.+...++|.+++++.+++ +++++..++.|+.+...+.+++
T Consensus 8 ~n~WKw~f~iLLAln~l~--~~~i~~~vlsp~ee~t~~~~a~ 47 (197)
T COG4698 8 LNYWKWLFFILLALNTLL--AVLIALFVLSPREEPTHLEDAS 47 (197)
T ss_pred ccHHHHHHHHHHHHHHHH--HHHhheeeccCCCCCchhhccC
Confidence 345566666655544444 3566678899999777766554
No 16
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=64.85 E-value=4 Score=24.79 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhheeeeee
Q 043833 60 AVAVTVILGCALLIFWLVVR 79 (237)
Q Consensus 60 l~~l~lllgi~~~i~~lvlr 79 (237)
+.++++++.|.++|+|.++.
T Consensus 14 l~~llflv~imliif~f~le 33 (43)
T PF11395_consen 14 LSFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333444445566776653
No 17
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=64.57 E-value=41 Score=26.25 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=39.9
Q ss_pred EEEEeeEEeeeccCC-CceeEEEEEEEEEeCCCceeeEEEeceEEEEE-ECCEEEeeeec
Q 043833 85 FHLTSLSVSNFSTNQ-SQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIY-YDGNYLTRTPL 142 (237)
Q Consensus 85 ~~v~s~~v~~~n~s~-s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~-Y~g~~lg~~~l 142 (237)
-.++.+++++..+.. ..-+-.+.++.+++|... ....|-.++++++ -+|+.+++..+
T Consensus 48 ~~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEE
Confidence 345555554443321 134567788889999997 8889999999988 58888887655
No 18
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=62.99 E-value=32 Score=27.90 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeee
Q 043833 53 LRPLVVAAVAVTVILGCALLIFWLVV 78 (237)
Q Consensus 53 ~r~l~~~l~~l~lllgi~~~i~~lvl 78 (237)
+..++.+++++++++++.+.++|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344444445555666666777765
No 19
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.99 E-value=13 Score=34.98 Aligned_cols=7 Identities=43% Similarity=0.890 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 043833 39 YPPYYQP 45 (237)
Q Consensus 39 y~~~~~~ 45 (237)
|+|++..
T Consensus 455 ~P~~~~p 461 (483)
T KOG2236|consen 455 YPHQQSP 461 (483)
T ss_pred CccccCC
Confidence 4454433
No 20
>PRK05529 cell division protein FtsQ; Provisional
Probab=61.86 E-value=17 Score=31.68 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=28.5
Q ss_pred CcEEEEEeeEEeeeccCC--------------C--------------ceeEEEEEEEEEeCCCceeeEEEec
Q 043833 82 IPEFHLTSLSVSNFSTNQ--------------S--------------QVTGNWDAAIEAYNPNKKMRVSYYD 125 (237)
Q Consensus 82 ~P~~~v~s~~v~~~n~s~--------------s--------------~l~~~~~~~l~v~NPN~k~~i~Y~~ 125 (237)
.|.|.|+++.|++-+.-+ + .+-.-=+++++-+.||. +.|+-.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 589999999998753211 1 12233356788889997 7777754
No 21
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=60.16 E-value=85 Score=25.47 Aligned_cols=83 Identities=14% Similarity=0.268 Sum_probs=43.3
Q ss_pred EeeEEeeeccCCCcee--EEEEEEEEEeCCCceeeEEEeceEEEEEECC-EEEeeeecCCceeCCCCceEEEE-EEEE--
Q 043833 88 TSLSVSNFSTNQSQVT--GNWDAAIEAYNPNKKMRVSYYDVVSGIYYDG-NYLTRTPLPPFSQDTRERTPLSA-KFSV-- 161 (237)
Q Consensus 88 ~s~~v~~~n~s~s~l~--~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g-~~lg~~~lp~F~q~~~~~t~v~~-~l~~-- 161 (237)
..+++..+-..+|... -.+.+.+.+..-+..+.|.|..+-=+++=.| ..+.++.+-. . ..+.+ ++-+
T Consensus 58 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~~-----~--g~F~A~evLAKh 130 (159)
T PRK13150 58 QRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTLEK-----G--NHVLAHEVLAKH 130 (159)
T ss_pred CEEEEeeEEeCCcEEECCCCcEEEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEECC-----C--CEEEEeEEEeCC
Confidence 4555555544333111 1344555666666667777766544444444 3455555521 1 13444 2333
Q ss_pred eeeecChHHHHHHHHH
Q 043833 162 IDSYVERKVLDSINAE 177 (237)
Q Consensus 162 ~~~~l~~~~~~~l~~d 177 (237)
++.+.+.++++.|++.
T Consensus 131 dekYmPpEv~~al~~~ 146 (159)
T PRK13150 131 DENYTPPEVEKAMQEN 146 (159)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 4677888888888653
No 22
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=59.52 E-value=15 Score=30.10 Aligned_cols=15 Identities=40% Similarity=0.910 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCC
Q 043833 17 GYPPPNTAYPYSAAP 31 (237)
Q Consensus 17 ~~~~~~~~~~y~~~p 31 (237)
+..+-..+++|+.+|
T Consensus 138 ~~~~m~~~~~y~~~~ 152 (182)
T PF06495_consen 138 QFNPMQGAYPYQMPP 152 (182)
T ss_pred cccccccccccccCC
Confidence 344444578888775
No 23
>PF14927 Neurensin: Neurensin
Probab=57.85 E-value=17 Score=28.90 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=15.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhe-ee
Q 043833 48 RRNNLLRPLVVAAVAVTVILGCALLIF-WL 76 (237)
Q Consensus 48 ~r~~~~r~l~~~l~~l~lllgi~~~i~-~l 76 (237)
+..+.+.-++.++-++++++|++++++ |+
T Consensus 38 ~w~s~~wkV~~i~g~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 38 RWSSVCWKVGFISGLLLLLLGIVALTVGYL 67 (140)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333323444455677788876654 44
No 24
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=56.26 E-value=14 Score=31.93 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=8.0
Q ss_pred HHhheeeeeeC
Q 043833 70 ALLIFWLVVRP 80 (237)
Q Consensus 70 ~~~i~~lvlrP 80 (237)
++.+.|+.+||
T Consensus 238 ~Ia~aW~~yRP 248 (248)
T PF07787_consen 238 TIALAWLFYRP 248 (248)
T ss_pred HHHHhheeeCc
Confidence 44567888887
No 25
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=55.44 E-value=58 Score=26.17 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=35.6
Q ss_pred EEEEEEEeCCCceeeEEEeceEEEEEECCE-EEeeeecCCceeCCCCceEEEEE--EE-EeeeecChHHHHHHHH
Q 043833 106 WDAAIEAYNPNKKMRVSYYDVVSGIYYDGN-YLTRTPLPPFSQDTRERTPLSAK--FS-VIDSYVERKVLDSINA 176 (237)
Q Consensus 106 ~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~-~lg~~~lp~F~q~~~~~t~v~~~--l~-~~~~~l~~~~~~~l~~ 176 (237)
+.+.+.+..-|.++.|.|+.+-=+++-.|+ .++++.+.. + ..+.+. +. =+..+.+.++.++|+.
T Consensus 72 ~~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~~~----~---~~f~A~~vLAKHdEnY~P~ev~~~mk~ 139 (153)
T COG2332 72 LKVSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQLQG----G---GVFEAKEVLAKHDENYTPPEVAKAMKK 139 (153)
T ss_pred cEEEEEEecCCceEEEEEeccCchhhhcCCeEEEEEEecC----C---CEEEeeehhhcCCcccCCHHHHHHhhh
Confidence 334444446677788888876556666554 445565522 1 123331 22 2356677777777765
No 26
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=53.39 E-value=82 Score=24.52 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=36.6
Q ss_pred CceeEEEEEEEEEeCCCceeeEEEeceEEEEEE--CCEEEeeeecCCceeCCCCceEEE
Q 043833 100 SQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYY--DGNYLTRTPLPPFSQDTRERTPLS 156 (237)
Q Consensus 100 s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y--~g~~lg~~~lp~F~q~~~~~t~v~ 156 (237)
.....+|+++|++||.+.+-.+.-.+++ +| +|..+-+--=.|...++-.+..+-
T Consensus 19 ~~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~v 74 (125)
T PF11322_consen 19 KHRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFV 74 (125)
T ss_pred CCceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEE
Confidence 3567889999999999887777665542 34 466665544456667777665543
No 27
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=52.27 E-value=73 Score=25.58 Aligned_cols=18 Identities=6% Similarity=-0.236 Sum_probs=11.8
Q ss_pred eEEEeceEEEEEECCEEE
Q 043833 120 RVSYYDVVSGIYYDGNYL 137 (237)
Q Consensus 120 ~i~Y~~~~~~v~Y~g~~l 137 (237)
+-+|=.+++++.+.+...
T Consensus 77 ~~rylkv~i~L~~~~~~~ 94 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEAT 94 (162)
T ss_pred CceEEEEEEEEEECCHHH
Confidence 357777777777765433
No 28
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=51.91 E-value=1e+02 Score=23.36 Aligned_cols=62 Identities=10% Similarity=0.169 Sum_probs=36.8
Q ss_pred EEeeeecCCceeCCCCceEE-EEEEEEeeeecChHHHHHHHHHh-cCCeEEEEEEEEEEEEEEEeEEEEe
Q 043833 136 YLTRTPLPPFSQDTRERTPL-SAKFSVIDSYVERKVLDSINAER-ARGAVKFDFRLEAIAGFKYGGWRTR 203 (237)
Q Consensus 136 ~lg~~~lp~F~q~~~~~t~v-~~~l~~~~~~l~~~~~~~l~~d~-~~g~v~~~v~v~~~vr~k~g~~~s~ 203 (237)
+++...+|+....+.++..+ +.++. ..+.+...++.++. ...++.+.++.+ .+.++|.++..
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~----i~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~ 65 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLT----ITDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFS 65 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEE----ecCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEE
Confidence 57888899988832222222 22222 23455677787775 355666666655 46778888554
No 29
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=50.57 E-value=12 Score=33.60 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=28.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhheee---eeeCCCcEEEEEe
Q 043833 47 TRRNNLLRPLVVAAVAVTVILGCALLIFWL---VVRPRIPEFHLTS 89 (237)
Q Consensus 47 ~~r~~~~r~l~~~l~~l~lllgi~~~i~~l---vlrP~~P~~~v~s 89 (237)
+..++++..++.-+++-+++++++++.+|. .+-|+.|++. ++
T Consensus 39 RT~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~ 83 (300)
T KOG3927|consen 39 RTGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS 83 (300)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc
Confidence 344667777666666666666666666664 4579999999 44
No 30
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=49.06 E-value=19 Score=24.65 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=11.6
Q ss_pred HHHHHHhheeeeeeCC
Q 043833 66 ILGCALLIFWLVVRPR 81 (237)
Q Consensus 66 llgi~~~i~~lvlrP~ 81 (237)
+.+.+.++.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4444666789999998
No 31
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.65 E-value=8.9 Score=30.75 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhheeeeeeCC
Q 043833 51 NLLRPLVVAAVAVTVILGCALLIFWLVVRPR 81 (237)
Q Consensus 51 ~~~r~l~~~l~~l~lllgi~~~i~~lvlrP~ 81 (237)
+.+..+..++++++++++.+++.+|.+.+|.
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 3444444444556666667778889988884
No 32
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=46.44 E-value=11 Score=28.87 Aligned_cols=11 Identities=9% Similarity=0.274 Sum_probs=7.3
Q ss_pred hheeeeeeCCC
Q 043833 72 LIFWLVVRPRI 82 (237)
Q Consensus 72 ~i~~lvlrP~~ 82 (237)
+++|+++||+.
T Consensus 14 ~i~yf~iRPQk 24 (113)
T PRK06531 14 GLIFFMQRQQK 24 (113)
T ss_pred HHHHheechHH
Confidence 34566799964
No 33
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=46.44 E-value=1.4e+02 Score=23.29 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=37.7
Q ss_pred hheeeeeeC--CCcEEEEEeeEEeeeccCCCceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEee
Q 043833 72 LIFWLVVRP--RIPEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTR 139 (237)
Q Consensus 72 ~i~~lvlrP--~~P~~~v~s~~v~~~n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~ 139 (237)
+++|.++.- +.++.++.+.+- ++ .+-.+-+..+++|-.+ ..+..=.+++++..++...+.
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~--l~-----~~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 35 FFGYYWLDKYLKKIELTLTSQKR--LQ-----YSESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred HHHHHHHhhhcCCceEEEeeeee--ee-----eccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCc
Confidence 344444444 456666555443 32 3456677789999987 788887888888875544433
No 34
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=46.04 E-value=14 Score=29.88 Aligned_cols=17 Identities=41% Similarity=1.099 Sum_probs=11.3
Q ss_pred HHHHHHHHhheeeeeeC
Q 043833 64 TVILGCALLIFWLVVRP 80 (237)
Q Consensus 64 ~lllgi~~~i~~lvlrP 80 (237)
++++|+++.++|+.+||
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 33444444788999998
No 35
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=45.14 E-value=11 Score=32.17 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=2.5
Q ss_pred HHHHHH
Q 043833 172 DSINAE 177 (237)
Q Consensus 172 ~~l~~d 177 (237)
.+|.+.
T Consensus 153 ~Em~~A 158 (217)
T PF07423_consen 153 NEMLKA 158 (217)
T ss_pred HHHHHH
Confidence 344443
No 36
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=44.60 E-value=47 Score=24.20 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=24.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhheeeeeeCCCcE
Q 043833 50 NNLLRPLVVAAVAVTVILGCALLIFWLVVRPRIPE 84 (237)
Q Consensus 50 ~~~~r~l~~~l~~l~lllgi~~~i~~lvlrP~~P~ 84 (237)
.+..-++.++++.+++++|++++-.|=--+|+.+.
T Consensus 44 ~wRalSii~FIlG~vl~lGilifs~y~~C~~~~~~ 78 (91)
T PHA02680 44 VWRALSVTCFIVGAVLLLGLFVFSMYRKCSGSMPY 78 (91)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 33444566677788889998888888755666665
No 37
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=43.90 E-value=1.8e+02 Score=24.70 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=37.6
Q ss_pred EEEEE-eeEEeeeccCCCceeEEEEEEEEEeCCCceeeEEEec--eEEEEEECCEEEe
Q 043833 84 EFHLT-SLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYD--VVSGIYYDGNYLT 138 (237)
Q Consensus 84 ~~~v~-s~~v~~~n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~--~~~~v~Y~g~~lg 138 (237)
+|+++ +++.....-++..+...-+.+|.++=||+ +.+.+.. .+..++|+|..+.
T Consensus 18 ~fs~~~~~t~d~v~~~gqklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 18 SFSFTADSTYDVVTPDGQKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred EEEEEEEeeeeeecCCCceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEE
Confidence 44443 23333333344578888899999999997 9999954 3578999987653
No 38
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.73 E-value=7 Score=34.96 Aligned_cols=16 Identities=6% Similarity=0.297 Sum_probs=6.9
Q ss_pred CCCCcchHHHHHHHHH
Q 043833 47 TRRNNLLRPLVVAAVA 62 (237)
Q Consensus 47 ~~r~~~~r~l~~~l~~ 62 (237)
.|+..|++++|+++++
T Consensus 267 aRK~k~i~ii~~iii~ 282 (297)
T KOG0810|consen 267 ARKWKIIIIIILIIII 282 (297)
T ss_pred hhhceeeeehHHHHHH
Confidence 3444444444444333
No 39
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=43.61 E-value=20 Score=33.15 Aligned_cols=12 Identities=17% Similarity=-0.064 Sum_probs=5.8
Q ss_pred CCcchHHHHHHH
Q 043833 49 RNNLLRPLVVAA 60 (237)
Q Consensus 49 r~~~~r~l~~~l 60 (237)
|.+|.|..+|++
T Consensus 296 r~~~~r~~~c~~ 307 (387)
T PF12751_consen 296 RSWFSRFASCIY 307 (387)
T ss_pred ccHHhhhhHHHH
Confidence 455555444443
No 40
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=42.99 E-value=33 Score=21.86 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeC
Q 043833 57 VVAAVAVTVILGCALLIFWLVVRP 80 (237)
Q Consensus 57 ~~~l~~l~lllgi~~~i~~lvlrP 80 (237)
..+|.+..+++++....+|+.|-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 334555667778888888999987
No 41
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=42.53 E-value=14 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=11.1
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 043833 63 VTVILGCALLIFWLVVRPR 81 (237)
Q Consensus 63 l~lllgi~~~i~~lvlrP~ 81 (237)
.++.+++.+..++..++|.
T Consensus 5 ~~v~~~L~~YL~~aLl~PE 23 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPE 23 (25)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 3444455555666667775
No 42
>PHA02692 hypothetical protein; Provisional
Probab=42.53 E-value=27 Score=24.26 Aligned_cols=14 Identities=14% Similarity=-0.014 Sum_probs=6.2
Q ss_pred CCCcchHHHHHHHH
Q 043833 48 RRNNLLRPLVVAAV 61 (237)
Q Consensus 48 ~r~~~~r~l~~~l~ 61 (237)
.++++..+...+++
T Consensus 38 ~~~~~~~~~~~ii~ 51 (70)
T PHA02692 38 DRSKGVPWTTVFLI 51 (70)
T ss_pred cccCCcchHHHHHH
Confidence 44444444444443
No 43
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.37 E-value=14 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=9.8
Q ss_pred HHHHHHHHHhheeeeee-CCCcEEEEEe
Q 043833 63 VTVILGCALLIFWLVVR-PRIPEFHLTS 89 (237)
Q Consensus 63 l~lllgi~~~i~~lvlr-P~~P~~~v~s 89 (237)
++-++|+|++|+|++-| -|.....++.
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 33345556666666654 2444444443
No 44
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=41.80 E-value=31 Score=30.30 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=12.7
Q ss_pred ceeEEEEEEEEEeCCCce
Q 043833 101 QVTGNWDAAIEAYNPNKK 118 (237)
Q Consensus 101 ~l~~~~~~~l~v~NPN~k 118 (237)
.+..+=++++.++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 444555688888888875
No 45
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=41.46 E-value=64 Score=27.88 Aligned_cols=6 Identities=33% Similarity=0.612 Sum_probs=2.9
Q ss_pred CCcchH
Q 043833 49 RNNLLR 54 (237)
Q Consensus 49 r~~~~r 54 (237)
|..++|
T Consensus 44 R~~FiR 49 (237)
T KOG2322|consen 44 RWGFIR 49 (237)
T ss_pred HHHHHH
Confidence 444554
No 46
>PHA02844 putative transmembrane protein; Provisional
Probab=39.85 E-value=54 Score=23.11 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhheee
Q 043833 50 NNLLRPLVVAAVAVTVILGCALLIFWL 76 (237)
Q Consensus 50 ~~~~r~l~~~l~~l~lllgi~~~i~~l 76 (237)
+++.....+++++++++++++.+++||
T Consensus 43 ~~~~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 43 VCSSSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333344334444454
No 47
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=39.68 E-value=34 Score=29.83 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhheeeeeeCCCcEEEEEeeEEeee
Q 043833 61 VAVTVILGCALLIFWLVVRPRIPEFHLTSLSVSNF 95 (237)
Q Consensus 61 ~~l~lllgi~~~i~~lvlrP~~P~~~v~s~~v~~~ 95 (237)
..+++++++.++++|...-++.|.|.++.+.|++=
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn 70 (269)
T COG1589 36 GLYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSGN 70 (269)
T ss_pred HHHHHHHHHHHHHHheehhhhcCCccceEEEEecC
Confidence 34444555566777888888899999999998863
No 48
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=38.55 E-value=29 Score=21.85 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhheeeeeeC
Q 043833 59 AAVAVTVILGCALLIFWLVVRP 80 (237)
Q Consensus 59 ~l~~l~lllgi~~~i~~lvlrP 80 (237)
++.+..+++++....+|..|.|
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCC
Confidence 4445666777788888999976
No 49
>CHL00020 psbN photosystem II protein N
Probab=38.07 E-value=38 Score=21.27 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhheeeeeeC
Q 043833 58 VAAVAVTVILGCALLIFWLVVRP 80 (237)
Q Consensus 58 ~~l~~l~lllgi~~~i~~lvlrP 80 (237)
.+|.+..+++++....+|..|-|
T Consensus 7 ~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 7 VAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHHHhhheeeeeccCC
Confidence 34455666778888888998887
No 50
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=37.87 E-value=63 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=20.2
Q ss_pred eeEEEEEEEEEeCCCceeeEEEeceEEE
Q 043833 102 VTGNWDAAIEAYNPNKKMRVSYYDVVSG 129 (237)
Q Consensus 102 l~~~~~~~l~v~NPN~k~~i~Y~~~~~~ 129 (237)
-..++.+++.+.||.. +++..+.+.+.
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 3567788888899997 88877766554
No 51
>PHA02819 hypothetical protein; Provisional
Probab=37.11 E-value=45 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhee
Q 043833 52 LLRPLVVAAVAVTVILGCALLIFW 75 (237)
Q Consensus 52 ~~r~l~~~l~~l~lllgi~~~i~~ 75 (237)
+..+...++++++++++++.+++|
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flY 66 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFY 66 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333333333333334
No 52
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=36.84 E-value=41 Score=28.59 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=12.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhh
Q 043833 51 NLLRPLVVAAVAVTVILGCALLI 73 (237)
Q Consensus 51 ~~~r~l~~~l~~l~lllgi~~~i 73 (237)
+....+|.+|++++++++.++++
T Consensus 127 K~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 127 KMAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666655554
No 53
>PTZ00116 signal peptidase; Provisional
Probab=36.58 E-value=88 Score=26.04 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=21.4
Q ss_pred CCCcEEEEEeeEEeeeccCCC------ceeEEEEEEEE-EeCCCceeeEEE
Q 043833 80 PRIPEFHLTSLSVSNFSTNQS------QVTGNWDAAIE-AYNPNKKMRVSY 123 (237)
Q Consensus 80 P~~P~~~v~s~~v~~~n~s~s------~l~~~~~~~l~-v~NPN~k~~i~Y 123 (237)
...|..+++-..|.++...+. .++.++++.|+ .-|=|.|--+-|
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy 86 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLY 86 (185)
T ss_pred CCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEEE
Confidence 345656665555566653221 44444444443 235566544433
No 54
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.27 E-value=16 Score=32.67 Aligned_cols=15 Identities=27% Similarity=0.673 Sum_probs=9.3
Q ss_pred HHHHHHHhheeeeee
Q 043833 65 VILGCALLIFWLVVR 79 (237)
Q Consensus 65 lllgi~~~i~~lvlr 79 (237)
+++.++++|+||+||
T Consensus 266 liIVLIMvIIYLILR 280 (299)
T PF02009_consen 266 LIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334446667788776
No 55
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=35.46 E-value=65 Score=24.96 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=6.3
Q ss_pred EEEeCCCceeeEEEec
Q 043833 110 IEAYNPNKKMRVSYYD 125 (237)
Q Consensus 110 l~v~NPN~k~~i~Y~~ 125 (237)
+.+...++.+.+.|+.
T Consensus 75 F~i~D~~~~i~V~Y~G 90 (131)
T PF03100_consen 75 FTITDGGKEIPVVYTG 90 (131)
T ss_dssp EEEE-SS-EEEEEEES
T ss_pred EEEEECCcEEEEEECC
Confidence 3333445445555543
No 56
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=35.12 E-value=24 Score=20.92 Aligned_cols=13 Identities=46% Similarity=1.055 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhee
Q 043833 63 VTVILGCALLIFW 75 (237)
Q Consensus 63 l~lllgi~~~i~~ 75 (237)
.+.+++++++++|
T Consensus 11 vv~iLt~~ILvFW 23 (34)
T PF08113_consen 11 VVMILTAFILVFW 23 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHH
Confidence 3344555555555
No 57
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=34.80 E-value=58 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.382 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhheeeeeeC
Q 043833 56 LVVAAVAVTVILGCALLIFWLVVRP 80 (237)
Q Consensus 56 l~~~l~~l~lllgi~~~i~~lvlrP 80 (237)
+...++++++.++++.++++|++.-
T Consensus 64 fvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 64 FVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeec
Confidence 3445566777777777888887764
No 58
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.22 E-value=20 Score=22.74 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=6.9
Q ss_pred HHhheeeeeeCCC
Q 043833 70 ALLIFWLVVRPRI 82 (237)
Q Consensus 70 ~~~i~~lvlrP~~ 82 (237)
.++++|.+++|+.
T Consensus 22 F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 22 FIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHcccc
Confidence 3344445567763
No 59
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=34.18 E-value=2.5e+02 Score=22.67 Aligned_cols=82 Identities=10% Similarity=0.252 Sum_probs=39.0
Q ss_pred EeeEEeeeccCCCcee--EEEEEEEEEeCCCceeeEEEeceEEEEEECC-EEEeeeecCCceeCCCCceEEEEE-EEE--
Q 043833 88 TSLSVSNFSTNQSQVT--GNWDAAIEAYNPNKKMRVSYYDVVSGIYYDG-NYLTRTPLPPFSQDTRERTPLSAK-FSV-- 161 (237)
Q Consensus 88 ~s~~v~~~n~s~s~l~--~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g-~~lg~~~lp~F~q~~~~~t~v~~~-l~~-- 161 (237)
+.+++.++-..+|... -++.+.+.+..-+..+.|.|..+-=+++=.| ..++++.+. + + ++.++ +-+
T Consensus 52 ~~~RlGG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVaeG~~~----~--g--~F~A~~vLAKH 123 (155)
T PRK13159 52 QQFRLGGMVKAGSIQRAADSLKVSFTVIDKNAATQVEYTGILPDLFRDNQSVIANGRMQ----G--G--RFVANEVLAKH 123 (155)
T ss_pred CeEEEccEEecCcEEEcCCCcEEEEEEEcCCcEEEEEEccCCCccccCCCeEEEEEEEc----C--C--EEEEeEEEecC
Confidence 5556655533332110 1222333333334446666665433333333 345555553 1 1 34442 333
Q ss_pred eeeecChHHHHHHHHH
Q 043833 162 IDSYVERKVLDSINAE 177 (237)
Q Consensus 162 ~~~~l~~~~~~~l~~d 177 (237)
++.+.+.++++.|++.
T Consensus 124 de~YmP~Ev~~al~~~ 139 (155)
T PRK13159 124 DETYMPKELKDAMAEG 139 (155)
T ss_pred CCcCCCHHHHHHHHhc
Confidence 4567888888878653
No 60
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=33.67 E-value=44 Score=22.24 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=9.7
Q ss_pred HHHHHHhheeeeeeCC
Q 043833 66 ILGCALLIFWLVVRPR 81 (237)
Q Consensus 66 llgi~~~i~~lvlrP~ 81 (237)
++.+|++++|+.-||+
T Consensus 41 ~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 41 VFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHhheeEEeccCC
Confidence 3334556678877774
No 61
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=33.42 E-value=1.1e+02 Score=25.10 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=6.9
Q ss_pred eeeCCCcEEEEE
Q 043833 77 VVRPRIPEFHLT 88 (237)
Q Consensus 77 vlrP~~P~~~v~ 88 (237)
++.+..|..++.
T Consensus 31 ~~~~~~~~~~i~ 42 (175)
T PF04573_consen 31 YFHPPSPSVSIS 42 (175)
T ss_pred hccCCCCceEEE
Confidence 366666665554
No 62
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.11 E-value=2.1e+02 Score=22.82 Aligned_cols=63 Identities=14% Similarity=0.299 Sum_probs=29.2
Q ss_pred EEEEEeCCCceeeEEEeceEEEEEECC-EEEeeeecCCceeCCCCceEEEEE-EEE--eeeecChHHHHHHHHH
Q 043833 108 AAIEAYNPNKKMRVSYYDVVSGIYYDG-NYLTRTPLPPFSQDTRERTPLSAK-FSV--IDSYVERKVLDSINAE 177 (237)
Q Consensus 108 ~~l~v~NPN~k~~i~Y~~~~~~v~Y~g-~~lg~~~lp~F~q~~~~~t~v~~~-l~~--~~~~l~~~~~~~l~~d 177 (237)
+++.+...+..+.+.|+..-=+.+=.| ..+..+.+.+ .+ .+.++ +-. ++...+.++.++|.++
T Consensus 73 ~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~~~-----~g--~F~A~~vLaKc~skY~p~ev~~~~~~~ 139 (148)
T PRK13254 73 VRFVVTDGNATVPVVYTGILPDLFREGQGVVAEGRLQD-----GG--VFVADEVLAKHDENYMPKEVADALKKA 139 (148)
T ss_pred EEEEEEeCCeEEEEEECCCCCccccCCCEEEEEEEECC-----CC--eEEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 344444445556666665322222222 3445555422 11 33332 222 3456667776666653
No 63
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=32.84 E-value=3.2e+02 Score=23.56 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=15.8
Q ss_pred eecCC-ceeCCCCceEEEEEEEE
Q 043833 140 TPLPP-FSQDTRERTPLSAKFSV 161 (237)
Q Consensus 140 ~~lp~-F~q~~~~~t~v~~~l~~ 161 (237)
...|| |..++++...+++...+
T Consensus 88 ivtPPlfrl~p~~~q~lRIi~~~ 110 (243)
T PRK15290 88 TVIPPVSRLEPSQEKVLRIIHTK 110 (243)
T ss_pred EEcCCeEEECCCCceEEEEEEcC
Confidence 34555 78888888888876654
No 64
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=32.75 E-value=31 Score=24.97 Aligned_cols=9 Identities=22% Similarity=0.612 Sum_probs=4.9
Q ss_pred CCCCcchHH
Q 043833 47 TRRNNLLRP 55 (237)
Q Consensus 47 ~~r~~~~r~ 55 (237)
+|.+.++|=
T Consensus 27 srN~sfird 35 (84)
T PF06143_consen 27 SRNRSFIRD 35 (84)
T ss_pred HhChHHHHH
Confidence 345566663
No 65
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.69 E-value=36 Score=27.40 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=14.8
Q ss_pred HHHHHHHHhheeeeeeCCCcEE
Q 043833 64 TVILGCALLIFWLVVRPRIPEF 85 (237)
Q Consensus 64 ~lllgi~~~i~~lvlrP~~P~~ 85 (237)
.+||+++++++|+..|.+.=.|
T Consensus 61 ~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHhheeEEEecccCcc
Confidence 3445667777788888876443
No 66
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=32.31 E-value=12 Score=20.89 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=10.3
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 043833 63 VTVILGCALLIFWLVVRPR 81 (237)
Q Consensus 63 l~lllgi~~~i~~lvlrP~ 81 (237)
+++.+++.+..++..+||.
T Consensus 4 ~~l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 3344444555556667774
No 67
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=32.15 E-value=27 Score=20.03 Aligned_cols=19 Identities=26% Similarity=0.516 Sum_probs=10.6
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 043833 63 VTVILGCALLIFWLVVRPR 81 (237)
Q Consensus 63 l~lllgi~~~i~~lvlrP~ 81 (237)
.++.+|+++..++-.+||.
T Consensus 9 ~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 3344445555556667885
No 68
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=31.93 E-value=66 Score=23.85 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhee-eeee
Q 043833 62 AVTVILGCALLIFW-LVVR 79 (237)
Q Consensus 62 ~l~lllgi~~~i~~-lvlr 79 (237)
.++.++.++.+|.| .++|
T Consensus 70 s~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 70 SFVCILVILYAIYYFVILR 88 (101)
T ss_pred HHHHHHHHHhhheEEEEEe
Confidence 33333333334445 4554
No 69
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=31.72 E-value=38 Score=28.94 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 043833 56 LVVAAVAVTVIL 67 (237)
Q Consensus 56 l~~~l~~l~lll 67 (237)
++-+++++++||
T Consensus 15 iLNiaI~IV~lL 26 (217)
T PF07423_consen 15 ILNIAIGIVSLL 26 (217)
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 70
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.20 E-value=45 Score=30.32 Aligned_cols=20 Identities=40% Similarity=0.868 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 043833 24 AYPYSAAPPQSQPYSYPPYYQ 44 (237)
Q Consensus 24 ~~~y~~~p~~~~~~~y~~~~~ 44 (237)
.+-|+.|||+ +||-|++-++
T Consensus 43 ~~~~~~PpPq-~~~~~~~~~g 62 (362)
T KOG1546|consen 43 PSSYPNPPPQ-PPYQYPQMAG 62 (362)
T ss_pred CCCCCCCCCC-CCCCCccccc
Confidence 5577777776 4565664443
No 71
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=30.97 E-value=37 Score=21.76 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=9.4
Q ss_pred HHHHHHhheeeeeeCCC
Q 043833 66 ILGCALLIFWLVVRPRI 82 (237)
Q Consensus 66 llgi~~~i~~lvlrP~~ 82 (237)
++++.+.+++.+++|+.
T Consensus 19 ~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 19 LALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 33444455556678753
No 72
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.82 E-value=83 Score=25.98 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhheeeeeeCCC--------------------------------------cEEEEEeeEEeeecc
Q 043833 56 LVVAAVAVTVILGCALLIFWLVVRPRI--------------------------------------PEFHLTSLSVSNFST 97 (237)
Q Consensus 56 l~~~l~~l~lllgi~~~i~~lvlrP~~--------------------------------------P~~~v~s~~v~~~n~ 97 (237)
++.+|.++++++++..++.|+.+.... |-+.++.+.+ |+.-
T Consensus 20 ~~iIi~~~llll~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~fvV-NL~~ 98 (182)
T PRK08455 20 LIIIIGVVVLLLLIVGVIAMLLMGSKEEEKENAQKPTQEVQANPPANSAQEAKEGSNIQDFLNIGPLYPLDPFTV-NLLS 98 (182)
T ss_pred EEehHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhcccCCccccccccccccccccccccceEecCCEEE-EccC
Q ss_pred CCCceeEEEEEEEEEeCC
Q 043833 98 NQSQVTGNWDAAIEAYNP 115 (237)
Q Consensus 98 s~s~l~~~~~~~l~v~NP 115 (237)
.+..=-..++++|.++++
T Consensus 99 ~~~~ryLkv~i~Le~~~~ 116 (182)
T PRK08455 99 QSGRRYLKTSISLELSNE 116 (182)
T ss_pred CCCceEEEEEEEEEECCH
No 73
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=30.57 E-value=59 Score=22.99 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.4
Q ss_pred HHHHHH
Q 043833 64 TVILGC 69 (237)
Q Consensus 64 ~lllgi 69 (237)
++++|+
T Consensus 55 llv~G~ 60 (82)
T PF11239_consen 55 LLVAGV 60 (82)
T ss_pred HHHHHH
Confidence 333344
No 74
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=29.29 E-value=78 Score=29.38 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=7.5
Q ss_pred ceeEEEEEEEEEeCC
Q 043833 101 QVTGNWDAAIEAYNP 115 (237)
Q Consensus 101 ~l~~~~~~~l~v~NP 115 (237)
.|+-.++++.++++-
T Consensus 83 NLtkeLN~t~~~K~~ 97 (442)
T PF06637_consen 83 NLTKELNLTTRAKDA 97 (442)
T ss_pred HHHHHhchhHHHHHH
Confidence 445555555555443
No 75
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=29.14 E-value=20 Score=31.82 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=5.0
Q ss_pred HHHHHHhheeee
Q 043833 66 ILGCALLIFWLV 77 (237)
Q Consensus 66 llgi~~~i~~lv 77 (237)
++.++++|+|++
T Consensus 270 il~vvliiLYiW 281 (295)
T TIGR01478 270 ILTVVLIILYIW 281 (295)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 76
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=28.89 E-value=37 Score=26.39 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhheeee
Q 043833 56 LVVAAVAVTVILGCALLIFWLV 77 (237)
Q Consensus 56 l~~~l~~l~lllgi~~~i~~lv 77 (237)
+.-++..|+++++++.++.||+
T Consensus 18 l~qv~~~L~lVl~lI~~~aWLl 39 (124)
T PRK11486 18 LLQVSGALIGIIALILAAAWLV 39 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666777778985
No 77
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=28.86 E-value=2.1e+02 Score=20.78 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=33.3
Q ss_pred ceeEEEEEEEEEeCCCceeeEE---EeceEEEEEECCEEEee--eecCCceeCCCCceEEEEEE
Q 043833 101 QVTGNWDAAIEAYNPNKKMRVS---YYDVVSGIYYDGNYLTR--TPLPPFSQDTRERTPLSAKF 159 (237)
Q Consensus 101 ~l~~~~~~~l~v~NPN~k~~i~---Y~~~~~~v~Y~g~~lg~--~~lp~F~q~~~~~t~v~~~l 159 (237)
.+.-++++.+++.||.. ..++ -.=....+.|.|..... ....-...+++++..+...+
T Consensus 12 ~vG~d~~v~v~~~N~~~-~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSS-EPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp BTTSEEEEEEEEEE-SS-S-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEeCCc-CccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 45578889999999965 2222 22234567888876422 22334455667776666655
No 78
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.68 E-value=3.2e+02 Score=22.18 Aligned_cols=82 Identities=13% Similarity=0.291 Sum_probs=38.2
Q ss_pred EeeEEeeeccCCCce--eEEEEEEEEEeCCCceeeEEEeceEEEEEECC-EEEeeeecCCceeCCCCceEEEE-EEEE--
Q 043833 88 TSLSVSNFSTNQSQV--TGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDG-NYLTRTPLPPFSQDTRERTPLSA-KFSV-- 161 (237)
Q Consensus 88 ~s~~v~~~n~s~s~l--~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g-~~lg~~~lp~F~q~~~~~t~v~~-~l~~-- 161 (237)
+.++|..+-..+|.. .-.+.+.+.+..-...+.|.|..+-=+++=.| ..+.++.+.+ .+ .+.+ ++-+
T Consensus 58 ~~iRvgG~V~~GSi~r~~~~l~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~~-----~g--~F~A~~vLAKh 130 (160)
T PRK13165 58 QRLRVGGMVMPGSVQRDPNSLKVSFTLYDAGGSVTVTYEGILPDLFREGQGIVAQGVLEE-----GN--HIEAKEVLAKH 130 (160)
T ss_pred CEEEEeeEEeCCcEEECCCCeEEEEEEEcCCeEEEEEEcccCCccccCCCeEEEEEEECC-----CC--eEEEEEEEecC
Confidence 455555554433211 11223333333444456666665433344433 3445555421 11 3333 2333
Q ss_pred eeeecChHHHHHHHH
Q 043833 162 IDSYVERKVLDSINA 176 (237)
Q Consensus 162 ~~~~l~~~~~~~l~~ 176 (237)
++.+.+.++++.|++
T Consensus 131 dekYmPpEv~~al~~ 145 (160)
T PRK13165 131 DENYTPPEVEEAMKK 145 (160)
T ss_pred CCCCCCHHHHHHHHh
Confidence 356778888877765
No 79
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=28.62 E-value=2.4e+02 Score=27.32 Aligned_cols=95 Identities=9% Similarity=0.154 Sum_probs=45.9
Q ss_pred CcEEEEEeeEEeeeccCCCceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEeeeecCCceeCCCCceEEEEEEEE
Q 043833 82 IPEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLPPFSQDTRERTPLSAKFSV 161 (237)
Q Consensus 82 ~P~~~v~s~~v~~~n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~lp~F~q~~~~~t~v~~~l~~ 161 (237)
+-++++.++++.++.+++ +.+.+++-+.++. .+.+++.+ |+|..=+.+.+..- .....++....+
T Consensus 439 ~~~l~~~~l~~~~l~i~~--------~~~~~~~~~G~l~--l~~l~~~l-~~G~~~~~~~ld~~----~~~~~~~~~~~~ 503 (604)
T PF05170_consen 439 DLTLSAGSLKANGLPISN--------LKLQLKAKDGLLT--LDPLSAKL-YGGSLSGSASLDAR----QDPPQYSLNLNL 503 (604)
T ss_pred eEEEEhhheEECCceecc--------cEEEEEecCCeEE--EeeeeEec-CCcEEEEEEEEecc----CCCccEEEeeee
Confidence 455666677776665553 2233344444333 33555554 77776666666531 122345555555
Q ss_pred eeeecChHHHHHHHH-HhcCCeEEEEEEEEEE
Q 043833 162 IDSYVERKVLDSINA-ERARGAVKFDFRLEAI 192 (237)
Q Consensus 162 ~~~~l~~~~~~~l~~-d~~~g~v~~~v~v~~~ 192 (237)
+++++..- ...+.. +.-.|...+++.+++.
T Consensus 504 ~~v~l~~L-l~~~~~~~~l~G~~~~~~~l~g~ 534 (604)
T PF05170_consen 504 RGVQLQPL-LQDLALPDPLSGTGDLNLDLTGQ 534 (604)
T ss_pred CCcchHHH-HhhhccccCceEEEEEEEEEEeC
Confidence 55555321 112211 2234555555555443
No 80
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=28.09 E-value=26 Score=26.60 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=7.5
Q ss_pred HHhheeeeeeCCC
Q 043833 70 ALLIFWLVVRPRI 82 (237)
Q Consensus 70 ~~~i~~lvlrP~~ 82 (237)
++++.|+++||+.
T Consensus 14 ~~i~yF~~iRPQk 26 (109)
T PRK05886 14 MGGFMYFASRRQR 26 (109)
T ss_pred HHHHHHHHccHHH
Confidence 3334456789963
No 81
>PTZ00370 STEVOR; Provisional
Probab=27.27 E-value=23 Score=31.51 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=4.5
Q ss_pred HHHHHhheeee
Q 043833 67 LGCALLIFWLV 77 (237)
Q Consensus 67 lgi~~~i~~lv 77 (237)
+.++++|+|++
T Consensus 267 l~vvliilYiw 277 (296)
T PTZ00370 267 LAVVLIILYIW 277 (296)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 82
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=26.98 E-value=42 Score=26.70 Aligned_cols=10 Identities=50% Similarity=0.790 Sum_probs=8.8
Q ss_pred eeeeCCCcEE
Q 043833 76 LVVRPRIPEF 85 (237)
Q Consensus 76 lvlrP~~P~~ 85 (237)
|+|+|..|.|
T Consensus 24 LVY~PvNPsF 33 (142)
T PF10614_consen 24 LVYTPVNPSF 33 (142)
T ss_pred eEeeccCCCC
Confidence 8999999876
No 83
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=26.91 E-value=87 Score=30.36 Aligned_cols=15 Identities=27% Similarity=0.591 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCC
Q 043833 26 PYSAAPPQSQPYSYP 40 (237)
Q Consensus 26 ~y~~~p~~~~~~~y~ 40 (237)
+|++++|++++..|+
T Consensus 575 ~y~~p~p~~n~~~~p 589 (694)
T KOG4264|consen 575 GYHGPPPHHNNHHNP 589 (694)
T ss_pred cCCCCCCCCCCCCCC
Confidence 677887776655555
No 84
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.78 E-value=1.5e+02 Score=22.62 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=10.7
Q ss_pred eEEEEEEEEEeCCCce
Q 043833 103 TGNWDAAIEAYNPNKK 118 (237)
Q Consensus 103 ~~~~~~~l~v~NPN~k 118 (237)
+...+.++.+-|-|.+
T Consensus 51 ~~~y~y~i~ayn~~Gk 66 (113)
T COG5294 51 SPGYEYTITAYNKNGK 66 (113)
T ss_pred CccceeeehhhccCCc
Confidence 3356677888887763
No 85
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=26.75 E-value=48 Score=25.18 Aligned_cols=17 Identities=18% Similarity=0.481 Sum_probs=9.0
Q ss_pred HHHhheeeeeeCCCcEE
Q 043833 69 CALLIFWLVVRPRIPEF 85 (237)
Q Consensus 69 i~~~i~~lvlrP~~P~~ 85 (237)
+-+.+.|++.++..|.+
T Consensus 17 ~~~~vt~~l~~~~~p~i 33 (111)
T PF09677_consen 17 LSAWVTWLLASQPQPRI 33 (111)
T ss_pred HHHHHHHHHHhcCCCce
Confidence 33445555566556643
No 86
>PHA03054 IMV membrane protein; Provisional
Probab=26.56 E-value=67 Score=22.40 Aligned_cols=10 Identities=0% Similarity=-0.247 Sum_probs=3.9
Q ss_pred chHHHHHHHH
Q 043833 52 LLRPLVVAAV 61 (237)
Q Consensus 52 ~~r~l~~~l~ 61 (237)
+..+...+++
T Consensus 45 ~~~~~~~ii~ 54 (72)
T PHA03054 45 CWGWYWLIII 54 (72)
T ss_pred CchHHHHHHH
Confidence 3344333333
No 87
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.33 E-value=1.1e+02 Score=19.22 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=10.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHH
Q 043833 47 TRRNNLLRPLVVAAVAVTVILG 68 (237)
Q Consensus 47 ~~r~~~~r~l~~~l~~l~lllg 68 (237)
+.+.+.....+.++-++.+++|
T Consensus 18 Kg~~SL~HF~LT~~gll~~lv~ 39 (45)
T PF11688_consen 18 KGGTSLFHFGLTAVGLLGFLVG 39 (45)
T ss_pred ccCcchhHHHHHHHHHHHHHHH
Confidence 4455555554444433333333
No 88
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=26.28 E-value=73 Score=23.05 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHHHHHHH
Q 043833 52 LLRPLVVAAVAVTVILGC 69 (237)
Q Consensus 52 ~~r~l~~~l~~l~lllgi 69 (237)
++-.+|++++++++++.+
T Consensus 36 FvLVic~~lVfVii~lFi 53 (84)
T PF06143_consen 36 FVLVICCFLVFVIIVLFI 53 (84)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566665554444433
No 89
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=26.23 E-value=83 Score=26.06 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeeeeCCCc
Q 043833 54 RPLVVAAVAVTVILGCALLIFWLVVRPRIP 83 (237)
Q Consensus 54 r~l~~~l~~l~lllgi~~~i~~lvlrP~~P 83 (237)
+++|+++ +.++++++++++..+++|..+
T Consensus 4 K~aF~~L--la~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 4 KWAFLIL--LALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHH--HHHHHHHHhheeeEEEccCCC
Confidence 4444444 333444455666778888865
No 90
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=26.22 E-value=76 Score=18.90 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=13.2
Q ss_pred CCCcchHHHHHHHHHHHHHH
Q 043833 48 RRNNLLRPLVVAAVAVTVIL 67 (237)
Q Consensus 48 ~r~~~~r~l~~~l~~l~lll 67 (237)
|+++-++-||.+++.-.+++
T Consensus 4 RKsK~~~tLCGa~Lgt~~~~ 23 (34)
T TIGR03726 4 RKSKKYRTLCGAALGTAVTA 23 (34)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 55677788888776554443
No 91
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=26.19 E-value=22 Score=26.67 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 043833 51 NLLRPLVVAAVAVTVILGCA 70 (237)
Q Consensus 51 ~~~r~l~~~l~~l~lllgi~ 70 (237)
+|+-.+++.+++++++++++
T Consensus 29 k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 29 KCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444
No 92
>PHA02898 virion envelope protein; Provisional
Probab=26.18 E-value=71 Score=23.32 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhheee-eeeCCCcE
Q 043833 52 LLRPLVVAAVAVTVILGCALLIFWL-VVRPRIPE 84 (237)
Q Consensus 52 ~~r~l~~~l~~l~lllgi~~~i~~l-vlrP~~P~ 84 (237)
..-|+.++++.+++++|++++-.|- --+|+.+.
T Consensus 45 RalSii~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 45 RSISIISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 3345566777788888888888774 44554443
No 93
>PHA03049 IMV membrane protein; Provisional
Probab=26.12 E-value=35 Score=23.50 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhheeeeee
Q 043833 60 AVAVTVILGCALLIFWLVVR 79 (237)
Q Consensus 60 l~~l~lllgi~~~i~~lvlr 79 (237)
++++++.++++++|+|-+++
T Consensus 5 ~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34555566667777776665
No 94
>PHA02650 hypothetical protein; Provisional
Probab=26.06 E-value=68 Score=22.89 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=10.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhheee
Q 043833 51 NLLRPLVVAAVAVTVILGCALLIFWL 76 (237)
Q Consensus 51 ~~~r~l~~~l~~l~lllgi~~~i~~l 76 (237)
++..+...+++++++++.++.+++||
T Consensus 45 ~~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333344444
No 95
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.03 E-value=32 Score=23.27 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=8.2
Q ss_pred HHhheeeeeeCCC
Q 043833 70 ALLIFWLVVRPRI 82 (237)
Q Consensus 70 ~~~i~~lvlrP~~ 82 (237)
.+.++|.+|||+.
T Consensus 22 fiavi~~ayr~~~ 34 (60)
T COG4736 22 FIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHhcccc
Confidence 3345577788853
No 96
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=25.98 E-value=66 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeeeeCC
Q 043833 54 RPLVVAAVAVTVILGCALLIFWLVVRPR 81 (237)
Q Consensus 54 r~l~~~l~~l~lllgi~~~i~~lvlrP~ 81 (237)
.|++.++-++++++|+++.++ =|.|+
T Consensus 39 Sg~~l~lG~lvllvGiaMAv~--GYwp~ 64 (141)
T PF10177_consen 39 SGLFLLLGILVLLVGIAMAVL--GYWPK 64 (141)
T ss_pred HHHHHHHHHHHHHHhhHhhee--ecccc
Confidence 455555556777778776553 23454
No 97
>PHA03048 IMV membrane protein; Provisional
Probab=25.55 E-value=88 Score=22.88 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhheee-eeeC
Q 043833 53 LRPLVVAAVAVTVILGCALLIFWL-VVRP 80 (237)
Q Consensus 53 ~r~l~~~l~~l~lllgi~~~i~~l-vlrP 80 (237)
.-|+.++++.+++++|++++-.|= .-.|
T Consensus 45 alsii~FIlgivl~lG~~ifsmy~r~C~~ 73 (93)
T PHA03048 45 ALSGIAFVLGIVMTIGMLIYSMWGRYCTP 73 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 345556677788888988888884 3344
No 98
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=25.37 E-value=33 Score=25.51 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=7.9
Q ss_pred HHhheeeeeeCCC
Q 043833 70 ALLIFWLVVRPRI 82 (237)
Q Consensus 70 ~~~i~~lvlrP~~ 82 (237)
+++..++++||+.
T Consensus 19 ~~ifyFli~RPQr 31 (97)
T COG1862 19 FAIFYFLIIRPQR 31 (97)
T ss_pred HHHHHHhhcCHHH
Confidence 3344446899964
No 99
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.74 E-value=31 Score=24.35 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=5.1
Q ss_pred HHhheeeeee
Q 043833 70 ALLIFWLVVR 79 (237)
Q Consensus 70 ~~~i~~lvlr 79 (237)
++..+||+++
T Consensus 16 fVap~WL~lH 25 (75)
T PF06667_consen 16 FVAPIWLILH 25 (75)
T ss_pred HHHHHHHHHH
Confidence 4444566553
No 100
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.84 E-value=59 Score=23.94 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=6.8
Q ss_pred HHHHHHHhheeeee
Q 043833 65 VILGCALLIFWLVV 78 (237)
Q Consensus 65 lllgi~~~i~~lvl 78 (237)
++.+|+.+++|+.+
T Consensus 78 ~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 78 VVGGLVGFLCWWFV 91 (96)
T ss_pred HHHHHHHHHhheeE
Confidence 33344445556544
No 101
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=23.74 E-value=39 Score=21.96 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhheeeeeeCCCcEEEEE
Q 043833 60 AVAVTVILGCALLIFWLVVRPRIPEFHLT 88 (237)
Q Consensus 60 l~~l~lllgi~~~i~~lvlrP~~P~~~v~ 88 (237)
++.+++++|++.+.+|.+++-+.=+-+++
T Consensus 6 iV~i~iv~~lLg~~I~~~~K~ygYkht~d 34 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICTTLKAYGYKHTVD 34 (50)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 34455555555566666666554444333
No 102
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=23.58 E-value=39 Score=23.33 Aligned_cols=20 Identities=10% Similarity=0.203 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhheeeeee
Q 043833 60 AVAVTVILGCALLIFWLVVR 79 (237)
Q Consensus 60 l~~l~lllgi~~~i~~lvlr 79 (237)
++++++.++++++|+|-+++
T Consensus 5 ~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455556666677776664
No 103
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=23.22 E-value=57 Score=34.80 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 043833 20 PPNTAYPYSAAPPQSQPYS 38 (237)
Q Consensus 20 ~~~~~~~y~~~p~~~~~~~ 38 (237)
||| +=|-.||||+|+|++
T Consensus 15 ppg-~epps~pppPppPg~ 32 (2365)
T COG5178 15 PPG-FEPPSQPPPPPPPGV 32 (2365)
T ss_pred CCC-CCCCCCCCCccCCCc
Confidence 344 445556666655654
No 104
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.69 E-value=55 Score=30.00 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhheeeeee--CC---CcEEEEEeeEEeee
Q 043833 60 AVAVTVILGCALLIFWLVVR--PR---IPEFHLTSLSVSNF 95 (237)
Q Consensus 60 l~~l~lllgi~~~i~~lvlr--P~---~P~~~v~s~~v~~~ 95 (237)
|++++|+=.|+-+|+|+++. ++ .|...-+-.-+.+|
T Consensus 232 IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF 272 (372)
T KOG2927|consen 232 ILVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESF 272 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhh
Confidence 33333333444456677766 33 35444444334443
No 105
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=22.57 E-value=46 Score=25.26 Aligned_cols=16 Identities=56% Similarity=1.211 Sum_probs=8.4
Q ss_pred hheeeee--eCCCcEEEE
Q 043833 72 LIFWLVV--RPRIPEFHL 87 (237)
Q Consensus 72 ~i~~lvl--rP~~P~~~v 87 (237)
+++||++ |-..|.|.|
T Consensus 11 li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHccccCceEEEE
Confidence 6667654 333455544
No 106
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.54 E-value=83 Score=27.92 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=10.4
Q ss_pred HHHHHhheeeeeeCCC
Q 043833 67 LGCALLIFWLVVRPRI 82 (237)
Q Consensus 67 lgi~~~i~~lvlrP~~ 82 (237)
|.|+++|+|++-|-|.
T Consensus 284 lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 284 LVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHhheeEeccc
Confidence 3445667788887654
No 107
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=22.34 E-value=1.1e+02 Score=23.36 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhheeeeeeCCCcEEEE
Q 043833 56 LVVAAVAVTVILGCALLIFWLVVRPRIPEFHL 87 (237)
Q Consensus 56 l~~~l~~l~lllgi~~~i~~lvlrP~~P~~~v 87 (237)
.++.+..++.++++.+++.|++.+=..|.+-+
T Consensus 5 ~l~~~~~~~~~~~l~~~~s~~v~~~~~P~iV~ 36 (112)
T TIGR02744 5 PLWMIPGCLAMVVLSALVSYGIVRLNSPVTVA 36 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCeEEE
Confidence 34444444445555667778887755555543
No 108
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=22.21 E-value=45 Score=26.36 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhheeeeee
Q 043833 60 AVAVTVILGCALLIFWLVVR 79 (237)
Q Consensus 60 l~~l~lllgi~~~i~~lvlr 79 (237)
+..++++++++++..|++-|
T Consensus 28 ~gsL~~iL~lil~~~wl~kr 47 (137)
T COG3190 28 FGSLILILALILFLAWLVKR 47 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777787644
No 109
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=22.19 E-value=54 Score=23.77 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=8.5
Q ss_pred CCcchHHHHHHHHHHHHHHH
Q 043833 49 RNNLLRPLVVAAVAVTVILG 68 (237)
Q Consensus 49 r~~~~r~l~~~l~~l~lllg 68 (237)
|+..++..+..+++++++++
T Consensus 10 ~k~~l~~~~isi~~~lvi~~ 29 (96)
T PF13800_consen 10 RKSRLRTVVISIISALVIFI 29 (96)
T ss_pred HHHHHHHHHHHHhhhhhhHH
Confidence 34445544444433333333
No 110
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=21.53 E-value=1.1e+02 Score=23.44 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCcchHHHHHHH
Q 043833 39 YPPYYQPPTRRNNLLRPLVVAA 60 (237)
Q Consensus 39 y~~~~~~~~~r~~~~r~l~~~l 60 (237)
|..|+..-.+...|||.+-.++
T Consensus 50 y~e~~~~~~~~a~~CRsvAli~ 71 (118)
T PF12428_consen 50 YDEYAASNTRGAACCRSVALIF 71 (118)
T ss_pred cccccccCCCceeHHHHHHHHH
Confidence 4555555444556666544433
No 111
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=21.36 E-value=1.2e+02 Score=18.59 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=10.5
Q ss_pred HHHHHHhheeeeeeCC
Q 043833 66 ILGCALLIFWLVVRPR 81 (237)
Q Consensus 66 llgi~~~i~~lvlrP~ 81 (237)
++-++..++|++++.+
T Consensus 31 ~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 31 FFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHhheEEEeCC
Confidence 3455667778887754
No 112
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.22 E-value=2.3e+02 Score=22.86 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=11.1
Q ss_pred EEEeceEEEEEECCEE
Q 043833 121 VSYYDVVSGIYYDGNY 136 (237)
Q Consensus 121 i~Y~~~~~~v~Y~g~~ 136 (237)
.+|=.+.+++.+.+..
T Consensus 86 ~ryLkv~i~L~~~~~~ 101 (166)
T PRK12785 86 VQYLKLKVVLEVKDEK 101 (166)
T ss_pred ceEEEEEEEEEECCHH
Confidence 4777777777776643
No 113
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=21.05 E-value=32 Score=25.18 Aligned_cols=6 Identities=33% Similarity=0.827 Sum_probs=2.5
Q ss_pred eeeeCC
Q 043833 76 LVVRPR 81 (237)
Q Consensus 76 lvlrP~ 81 (237)
|++|-|
T Consensus 64 lv~KAk 69 (91)
T PF01708_consen 64 LVLKAK 69 (91)
T ss_pred heeeec
Confidence 344443
No 114
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=21.02 E-value=1.1e+02 Score=24.59 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhheeeeeeC
Q 043833 62 AVTVILGCALLIFWLVVRP 80 (237)
Q Consensus 62 ~l~lllgi~~~i~~lvlrP 80 (237)
+|++++...+..+|-.=+.
T Consensus 18 Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 18 LLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHhcceEEEeecc
Confidence 3334444455667765443
No 115
>PHA03160 hypothetical protein; Provisional
Probab=20.54 E-value=1.9e+02 Score=27.70 Aligned_cols=9 Identities=11% Similarity=0.383 Sum_probs=4.4
Q ss_pred CCCCCCCCC
Q 043833 3 NSRPATGYP 11 (237)
Q Consensus 3 ~~~~~~~~~ 11 (237)
+.+..+.||
T Consensus 277 ~~~~~~~~~ 285 (499)
T PHA03160 277 QHPRPACFP 285 (499)
T ss_pred CCCCCCCCC
Confidence 334445565
No 116
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=20.50 E-value=84 Score=27.05 Aligned_cols=9 Identities=11% Similarity=-0.149 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 043833 55 PLVVAAVAV 63 (237)
Q Consensus 55 ~l~~~l~~l 63 (237)
|+.++++++
T Consensus 228 ~~~~~~i~~ 236 (251)
T PF09753_consen 228 CWTWLMIFV 236 (251)
T ss_pred HHHHHHHHH
Confidence 444443333
No 117
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.28 E-value=34 Score=30.51 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhee
Q 043833 63 VTVILGCALLIFW 75 (237)
Q Consensus 63 l~lllgi~~~i~~ 75 (237)
+++++|+|+.++|
T Consensus 158 iLLIA~iIa~icy 170 (290)
T PF05454_consen 158 ILLIAGIIACICY 170 (290)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 3334444444443
No 118
>PTZ00046 rifin; Provisional
Probab=20.25 E-value=38 Score=31.11 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=9.4
Q ss_pred HHHHHhheeeeeeC
Q 043833 67 LGCALLIFWLVVRP 80 (237)
Q Consensus 67 lgi~~~i~~lvlrP 80 (237)
+.++++|+||+||=
T Consensus 327 IVLIMvIIYLILRY 340 (358)
T PTZ00046 327 IVLIMVIIYLILRY 340 (358)
T ss_pred HHHHHHHHHHHHHh
Confidence 33466778998873
No 119
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=89 Score=24.00 Aligned_cols=11 Identities=27% Similarity=0.108 Sum_probs=5.1
Q ss_pred hHHHHHHHHHH
Q 043833 53 LRPLVVAAVAV 63 (237)
Q Consensus 53 ~r~l~~~l~~l 63 (237)
.+.+|+.++++
T Consensus 96 ~~l~~~m~~f~ 106 (118)
T KOG3385|consen 96 ISLLCWMAVFS 106 (118)
T ss_pred cchHHHHHHHH
Confidence 34455554433
No 120
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=20.05 E-value=35 Score=26.15 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=0.0
Q ss_pred CCCCcchHHHHHHH---HHHHHHHHHHHhheeeeeeC
Q 043833 47 TRRNNLLRPLVVAA---VAVTVILGCALLIFWLVVRP 80 (237)
Q Consensus 47 ~~r~~~~r~l~~~l---~~l~lllgi~~~i~~lvlrP 80 (237)
.+|.+|-|++.++- ++.++|+|-+ +.+|++|.=
T Consensus 23 ~~~~s~sra~~vagltvLa~LLiAGQa-~TaYfv~~Q 58 (114)
T PF09307_consen 23 PQRGSCSRALKVAGLTVLACLLIAGQA-VTAYFVFQQ 58 (114)
T ss_dssp -------------------------------------
T ss_pred CCCCCccchhHHHHHHHHHHHHHHhHH-HHHHHHHHh
Confidence 45566767665543 2333344433 445666653
Done!