Query 043833
Match_columns 237
No_of_seqs 143 out of 867
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.3 6E-06 2E-10 66.8 10.6 77 81-162 43-120 (174)
2 1xo8_A AT1G01470; structural g 98.2 2.4E-06 8.2E-11 67.6 6.6 103 81-193 20-124 (151)
3 3but_A Uncharacterized protein 98.0 6.9E-05 2.3E-09 58.2 11.9 73 102-175 16-89 (136)
4 2kyg_C Protein CBFA2T1; protei 55.3 5.1 0.00017 23.2 1.3 10 1-10 2-11 (38)
5 2knc_B Integrin beta-3; transm 50.8 9.9 0.00034 26.1 2.5 21 56-76 13-33 (79)
6 2k9j_B Integrin beta-3; transm 40.0 24 0.00084 21.1 2.8 20 56-75 12-31 (43)
7 3s8f_C Cytochrome C oxidase po 33.6 16 0.00056 20.9 1.1 15 62-76 10-24 (34)
8 2lk9_A Bone marrow stromal ant 31.5 54 0.0019 18.6 3.1 7 62-68 13-19 (35)
9 2l0d_A Cell surface protein; s 30.8 1.5E+02 0.0052 21.4 7.3 66 83-158 3-68 (114)
10 3kdp_B Sodium/potassium-transp 30.3 26 0.0009 29.9 2.4 40 50-90 13-55 (286)
11 3ixz_B Potassium-transporting 26.8 39 0.0013 28.9 2.9 49 39-87 22-75 (290)
12 3hd7_B Syntaxin-1A; membrane p 25.6 41 0.0014 24.1 2.5 7 67-73 97-103 (109)
13 2l8s_A Integrin alpha-1; trans 21.5 67 0.0023 20.3 2.5 23 60-82 16-40 (54)
14 4gyx_A Type III collagen fragm 21.2 48 0.0016 17.8 1.5 8 7-14 14-21 (31)
15 2jp3_A FXYD domain-containing 20.2 1E+02 0.0035 20.3 3.3 13 60-72 24-36 (67)
16 2knc_A Integrin alpha-IIB; tra 20.0 75 0.0026 20.1 2.5 24 59-82 18-43 (54)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.28 E-value=6e-06 Score=66.82 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=69.9
Q ss_pred CCcEEEEEeeEEeeeccCCCceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEeeeecC-CceeCCCCceEEEEEE
Q 043833 81 RIPEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLP-PFSQDTRERTPLSAKF 159 (237)
Q Consensus 81 ~~P~~~v~s~~v~~~n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~lp-~F~q~~~~~t~v~~~l 159 (237)
+.|+++++++++.+++... .+|.+.|+++|||. ..+.+..++..+.-+|..|+++..+ ++..++++++.+.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~~----~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv 117 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG----VDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPV 117 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS----EEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEE
T ss_pred CCCEEEEEEeEEeccccce----EEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEE
Confidence 6899999999999886653 88999999999998 9999999999999999999999887 5899999999999988
Q ss_pred EEe
Q 043833 160 SVI 162 (237)
Q Consensus 160 ~~~ 162 (237)
+..
T Consensus 118 ~v~ 120 (174)
T 1yyc_A 118 KVA 120 (174)
T ss_dssp EES
T ss_pred EEE
Confidence 775
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.20 E-value=2.4e-06 Score=67.64 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=80.1
Q ss_pred CCcEEEEEeeEEeeeccCCCceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEeeeecC-CceeCCCCceEEEEEE
Q 043833 81 RIPEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLP-PFSQDTRERTPLSAKF 159 (237)
Q Consensus 81 ~~P~~~v~s~~v~~~n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~lp-~F~q~~~~~t~v~~~l 159 (237)
+.|+++++++++.+++.. ..+|.+.|+++|||. ..+.+..++..+.-+|..++++..+ ++..++++++.+.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~~----~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv 94 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD----SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPV 94 (151)
T ss_dssp CSCCCBCSEEEECCCTTT----EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECC
T ss_pred CCCEEEEEEeEEeccCcc----eeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEE
Confidence 679999999999877554 578999999999998 9999999999999999999998887 5889999999999888
Q ss_pred EEeeeecChHHHHHHHHHh-cCCeEEEEEEEEEEE
Q 043833 160 SVIDSYVERKVLDSINAER-ARGAVKFDFRLEAIA 193 (237)
Q Consensus 160 ~~~~~~l~~~~~~~l~~d~-~~g~v~~~v~v~~~v 193 (237)
+..-.. ..++..++ ..+.++.+++.+..+
T Consensus 95 ~v~~~~-----l~~~~~~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 95 VVPYSI-----LFNLARDVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp CEEHHH-----HHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred EEEHHH-----HHHHHHhcccCCcccEEEEEEEEE
Confidence 776321 12222332 346777777555543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.05 E-value=6.9e-05 Score=58.20 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=62.0
Q ss_pred eeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEeeee-cCCceeCCCCceEEEEEEEEeeeecChHHHHHHH
Q 043833 102 VTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTP-LPPFSQDTRERTPLSAKFSVIDSYVERKVLDSIN 175 (237)
Q Consensus 102 l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~-lp~F~q~~~~~t~v~~~l~~~~~~l~~~~~~~l~ 175 (237)
-...|.+.|++.|||. +.+.++.++..+..+|..||++. ...+..++.+++.+.+.+..+...+.+...+.+.
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ 89 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA 89 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence 3577999999999997 99999999999999999999987 5689999999999999999887666665444444
No 4
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=55.28 E-value=5.1 Score=23.24 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=8.6
Q ss_pred CCCCCCCCCC
Q 043833 1 MENSRPATGY 10 (237)
Q Consensus 1 ~~~~~~~~~~ 10 (237)
|..|||.|||
T Consensus 2 ~~~~r~gtGY 11 (38)
T 2kyg_C 2 MADIGSASGY 11 (38)
T ss_dssp CSCCSCCCSS
T ss_pred cccCCCCCCC
Confidence 6789999998
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.81 E-value=9.9 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.664 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhheee
Q 043833 56 LVVAAVAVTVILGCALLIFWL 76 (237)
Q Consensus 56 l~~~l~~l~lllgi~~~i~~l 76 (237)
+...+++.++++|++++++|-
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334455566778888887773
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=40.05 E-value=24 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.732 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhee
Q 043833 56 LVVAAVAVTVILGCALLIFW 75 (237)
Q Consensus 56 l~~~l~~l~lllgi~~~i~~ 75 (237)
+...++..++++|++++++|
T Consensus 12 Iv~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 12 VLLSVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33344556777888888777
No 7
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=33.63 E-value=16 Score=20.93 Aligned_cols=15 Identities=47% Similarity=1.048 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhheee
Q 043833 62 AVTVILGCALLIFWL 76 (237)
Q Consensus 62 ~l~lllgi~~~i~~l 76 (237)
+.++++|++++++|+
T Consensus 10 ~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 10 AVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 444556666666664
No 8
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=31.47 E-value=54 Score=18.63 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 043833 62 AVTVILG 68 (237)
Q Consensus 62 ~l~lllg 68 (237)
+++++++
T Consensus 13 ~LLviV~ 19 (35)
T 2lk9_A 13 VLLIIVI 19 (35)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 9
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=30.77 E-value=1.5e+02 Score=21.37 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=38.0
Q ss_pred cEEEEEeeEEeeeccCCCceeEEEEEEEEEeCCCceeeEEEeceEEEEEECCEEEeeeecCCceeCCCCceEEEEE
Q 043833 83 PEFHLTSLSVSNFSTNQSQVTGNWDAAIEAYNPNKKMRVSYYDVVSGIYYDGNYLTRTPLPPFSQDTRERTPLSAK 158 (237)
Q Consensus 83 P~~~v~s~~v~~~n~s~s~l~~~~~~~l~v~NPN~k~~i~Y~~~~~~v~Y~g~~lg~~~lp~F~q~~~~~t~v~~~ 158 (237)
|...+.+++-+. ..-+-..++++.++|.-.... ....+.++-+|..++...+++. .++.++.+.+.
T Consensus 3 PDL~vt~itP~~-----~~~~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~L--aaG~s~tv~~~ 68 (114)
T 2l0d_A 3 PDLVPVSLTPVT-----VVPNTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTSL--ESENSTNVDFH 68 (114)
T ss_dssp CCEEEEEEECSE-----ECTTSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESCB--CBTCEEEEEEE
T ss_pred CCcEEEeccCCC-----cCCCCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceecccc--cCCCEEEEEEE
Confidence 555555553222 123345567778899865322 4456777779999988777653 23344444443
No 10
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=30.27 E-value=26 Score=29.90 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=23.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhee---eeeeCCCcEEEEEee
Q 043833 50 NNLLRPLVVAAVAVTVILGCALLIFW---LVVRPRIPEFHLTSL 90 (237)
Q Consensus 50 ~~~~r~l~~~l~~l~lllgi~~~i~~---lvlrP~~P~~~v~s~ 90 (237)
+++..+++.=+++-++|+|++++.+| +.|.++.|++. +..
T Consensus 13 ~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~ 55 (286)
T 3kdp_B 13 GSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRV 55 (286)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCC
Confidence 44555555544454455555555444 44789999998 544
No 11
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=26.77 E-value=39 Score=28.89 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCCCCCCCCC--CcchHHHHHHHHHHHHHHHHHHhhee---eeeeCCCcEEEE
Q 043833 39 YPPYYQPPTRR--NNLLRPLVVAAVAVTVILGCALLIFW---LVVRPRIPEFHL 87 (237)
Q Consensus 39 y~~~~~~~~~r--~~~~r~l~~~l~~l~lllgi~~~i~~---lvlrP~~P~~~v 87 (237)
|++..+.=-.| +++..+++.=+++-++|+|++++.+| ..+.|..|++.-
T Consensus 22 ~N~~t~~~lGRT~~sW~~IllFYliFY~~LaglFa~~m~v~l~Tld~~~Pkyqd 75 (290)
T 3ixz_B 22 WNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQD 75 (290)
T ss_pred EcCCCCceeCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 56665542233 34444444434444444444444443 456788888863
No 12
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=25.56 E-value=41 Score=24.15 Aligned_cols=7 Identities=0% Similarity=-0.695 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 043833 67 LGCALLI 73 (237)
Q Consensus 67 lgi~~~i 73 (237)
+.+++++
T Consensus 97 ~~i~~~~ 103 (109)
T 3hd7_B 97 GIIIAST 103 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 13
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=21.50 E-value=67 Score=20.30 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhee--eeeeCCC
Q 043833 60 AVAVTVILGCALLIFW--LVVRPRI 82 (237)
Q Consensus 60 l~~l~lllgi~~~i~~--lvlrP~~ 82 (237)
++.-+++++++++++| =.|+.+.
T Consensus 16 vl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 16 AFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3334445555666777 2355443
No 14
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=21.20 E-value=48 Score=17.84 Aligned_cols=8 Identities=38% Similarity=1.124 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 043833 7 ATGYPAPT 14 (237)
Q Consensus 7 ~~~~~~~~ 14 (237)
+||+|-|+
T Consensus 14 vmgfpgpp 21 (31)
T 4gyx_A 14 VMGFPGPP 21 (31)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 56665433
No 15
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.20 E-value=1e+02 Score=20.30 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 043833 60 AVAVTVILGCALL 72 (237)
Q Consensus 60 l~~l~lllgi~~~ 72 (237)
+..+++++||+++
T Consensus 24 fA~vLfi~GI~ii 36 (67)
T 2jp3_A 24 FGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3345555665544
No 16
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.03 E-value=75 Score=20.06 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhee--eeeeCCC
Q 043833 59 AAVAVTVILGCALLIFW--LVVRPRI 82 (237)
Q Consensus 59 ~l~~l~lllgi~~~i~~--lvlrP~~ 82 (237)
+++.-+++++++++++| =.|+.+.
T Consensus 18 svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 18 GVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 33344445555666777 2344443
Done!