BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043837
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 191/376 (50%), Gaps = 25/376 (6%)
Query: 7 ALDDLNTAIEADPTLSEAYFHRGSVL-------------RQLCRVKARNSVAEKELSQLL 53
AL DL I+ + A RG +L +++ + + ++ SQL+
Sbjct: 79 ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138
Query: 54 QA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SXXXXXXXXXXXXXXDYA 107
++ Q AL + SG+YT + ++DK++ V C + +
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPR 194
Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
AIS+ K +N EA YY L DH+++ ++ L+LD +H Y +
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
K L K +SAE+ + G+ A +++ + +P+ + V +C K + +A
Sbjct: 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
+ C+E L + + + AL R EA L+ E ++ A++D ++A + + D IRE L +A++
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREIAAA 345
LK S+++D+YKILGV + A EI +AY+KLALQWHPD +N + +++AE KF +IAAA
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 346 YEVLGDDDKRARYDRG 361
EVL D + R ++D G
Sbjct: 435 KEVLSDPEMRKKFDDG 450
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
++ G+L A+ F AA+ DP+ N Y V + +G+ K AL T+ + + +
Sbjct: 37 LAAGQLADALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281
A +QRG L + A +D K + +P + +EA
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 189/376 (50%), Gaps = 25/376 (6%)
Query: 7 ALDDLNTAIEADPTLSEAYFHRGSVL-------------RQLCRVKARNSVAEKELSQLL 53
AL DL I+ + A RG +L +++ + + ++ SQL+
Sbjct: 79 ALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138
Query: 54 QA---QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SXXXXXXXXXXXXXXDYA 107
++ Q AL + SG+YT + ++DK++ V C + +
Sbjct: 139 KSDEXQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPR 194
Query: 108 SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167
AIS+ K +N EA YY L DH+++ ++ L+LD +H Y +
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Query: 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227
K L K +SAE+ + G+ A +++ +P+ + V +C K + +A
Sbjct: 255 KKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
Query: 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
+ C+E L + + AL R EA L+ E ++ A++D ++A + + D IRE L +A++
Sbjct: 315 IRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD--KNVDNREEAENKFREIAAA 345
LK S+++D+YKILGV + A EI +AY+KLALQWHPD +N + +++AE KF +IAAA
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 346 YEVLGDDDKRARYDRG 361
EVL D + R ++D G
Sbjct: 435 KEVLSDPEXRKKFDDG 450
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
++ G+L A+ F AA+ DP+ N Y V + G+ K AL T+ + + +
Sbjct: 37 LAAGQLADALSQFHAAVDGDPD----NYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281
A +QRG L + A +D K + +P + +EA
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 7/254 (2%)
Query: 45 AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SXXXXXXXXXXX 101
AE +L + + Q AL +D +YT + ++DK++ V C +
Sbjct: 110 AESQLVKADEXQRLRSQALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECFI 165
Query: 102 XXXDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161
+ AIS+ K +N EA YY L DH+++ ++ L+LD +H
Sbjct: 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225
Query: 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL 221
Y +K L K +SAE+ + G+ A +++ +P+ + V +C K
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKD 285
Query: 222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281
+ +A+ C+E L + + AL R EA L+ E ++ A++D ++A + + D IRE
Sbjct: 286 EKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREG 345
Query: 282 LMRAEKALKMSKRK 295
L +A++ LK S+++
Sbjct: 346 LEKAQRLLKQSQKR 359
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240
++ G+L A+ F AA+ DP+ N Y V + G+ K AL T+ + + +
Sbjct: 14 LAAGQLADALSQFHAAVDGDPD----NYIAYYRRATVFLAXGKSKAALPDLTKVIALKXD 69
Query: 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA---LMRAEKALKM-SKRKD 296
A +QRG L + A +D K + +P + +EA L++A++ ++ S+ D
Sbjct: 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRLRSQALD 129
Query: 297 WYKILGVSKTASIS 310
+ G TA+I+
Sbjct: 130 AFD--GADYTAAIT 141
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 53/65 (81%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
++Y++LGV +AS +IK+AY+KLAL+WHPDKN DN+EEAE KF+ ++ AYEVL D KR
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 356 ARYDR 360
+ YDR
Sbjct: 70 SLYDR 74
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 50/64 (78%)
Query: 297 WYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRA 356
+Y+IL V ++AS +IK+AY++ ALQWHPDKN DN+E AE KF+E+A AYEVL D KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 357 RYDR 360
YDR
Sbjct: 64 IYDR 67
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
D+Y++L V + AS IK+AY+KLAL+WHPDKN +N+EEAE +F+++A AYEVL D KR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 356 ARYDR 360
YDR
Sbjct: 70 DIYDR 74
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
++D+Y+ILGVSKTA EI++AYK+LA+++HPD+N ++ EAE KF+EI AYEVL D
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQ 60
Query: 354 KRARYDR 360
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
++D+Y+ILGVSKTA EI++AYK+LA+++HPD+N ++ EAE KF+EI AYEVL D
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQ 60
Query: 354 KRARYDR 360
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
++D+Y+ILGVSKTA EI++AYK+LA+++HPD+N ++ EAE KF+EI AYEVL D
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQ 60
Query: 354 KRARYDR 360
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
D Y++LGVS+TAS ++IK+AYKKLA +WHPDKN D AE++F +I+ AYE+L +++KR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKR 75
Query: 356 ARYD 359
YD
Sbjct: 76 TNYD 79
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 4/71 (5%)
Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
M K +Y +LGV AS +E+K+AY+K+AL++HPDKN D E+ F++I+ AYEVL
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ----FKQISQAYEVLS 59
Query: 351 DDDKRARYDRG 361
D+ KR YD+G
Sbjct: 60 DEKKRQIYDQG 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 297 WYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRA 356
+Y ILGV K+AS +IK+A+ KLA+++HPDKN +AE KFREIA AYE L D ++R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKN--KSPDAEAKFREIAEAYETLSDANRRK 66
Query: 357 RYD 359
YD
Sbjct: 67 EYD 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
M K +Y +LGV A+ E+K+AY+KLAL++HPDKN + E KF++I+ AYEVL
Sbjct: 2 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLS 57
Query: 351 DDDKRARYDRG 361
D KR YD+G
Sbjct: 58 DAKKRELYDKG 68
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
KD+Y+ LG+++ AS EIKRAY++ AL++HPDKN + AE KF+EIA AY+VL D K
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRK 60
Query: 355 RARYDR 360
R +DR
Sbjct: 61 REIFDR 66
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
+++Y +LGVSKTAS EI++A+KKLAL+ HPDKN +N A F +I AYEVL D+D
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDL 79
Query: 355 RARYDR 360
R +YD+
Sbjct: 80 RKKYDK 85
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
+++Y +LGVSKTAS EI++A+KKLAL+ HPDKN +N A F +I AYEVL D+D
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDL 60
Query: 355 RARYDR 360
R +YD+
Sbjct: 61 RKKYDK 66
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
D+Y+ILGV + AS EIK+AY +LA ++HPD N D+ +A+ KF ++A AYEVL D+ KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKR 66
Query: 356 ARYD 359
+YD
Sbjct: 67 KQYD 70
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 298 YKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRAR 357
Y +LG+ K A+ +IK++Y+KLAL++HPDKN DN E A+ KF+EI A+ +L D KR
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD-KFKEINNAHAILTDATKRNI 78
Query: 358 YDR 360
YD+
Sbjct: 79 YDK 81
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355
D+Y+ILGVS+ AS ++K+AY++LAL++HPDKN + A F+ I AY VL + +KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN--HAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 356 ARYDR 360
+YD+
Sbjct: 66 KQYDQ 70
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-----VDNREEAENKFREI 342
AL+ + +KDWY ILG +A++S++K+ Y+KL L +HPDK EE KF EI
Sbjct: 9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68
Query: 343 AAAYEVLGDDDKRARYD 359
A+++LG+++ + +YD
Sbjct: 69 DQAWKILGNEETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 288 ALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-----VDNREEAENKFREI 342
A++ +KDWY ILG +A+IS++K+ Y+KL L +HPDK EE KF EI
Sbjct: 3 AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEI 62
Query: 343 AAAYEVLGDDDKRARYD--RGED 363
A+++LG+++ + YD R ED
Sbjct: 63 DQAWKILGNEETKREYDLQRCED 85
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
KD+Y ILGV T + IK AY++LA ++HPD + +N +AE KF+++A A+EVL D+ +
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQR 85
Query: 355 RARYDR 360
RA YD+
Sbjct: 86 RAEYDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 292 SKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD 351
S+ KD+Y I+GV T + IK AY++LA ++HPD V +AE +F+E+A A+EVL D
Sbjct: 2 SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD--VSKEPDAEARFKEVAEAWEVLSD 59
Query: 352 DDKRARYDR 360
+ +RA YD+
Sbjct: 60 EQRRAEYDQ 68
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 291 MSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350
M K Y +LGVS +A+ E+K+ Y+K AL++HPDK + E KF+EI+ A+E+L
Sbjct: 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILN 59
Query: 351 DDDKRARYDR 360
D KR YD+
Sbjct: 60 DPQKREIYDQ 69
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
N+ EA + G AYY D+D A ++QK L LDP ++E A++ L N K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYK-------- 55
Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
+G A+E ++ AL LDPN N + L K G +A+ +AL ++
Sbjct: 56 -QGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Query: 242 IEALVQRGEAK 252
EA G AK
Sbjct: 111 AEAKQNLGNAK 121
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAISETG 114
A++ ++ Y G+Y + +EY K L P + DY AI
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKA-LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 115 YLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162
L+ D NN EA + G AYY D+D A ++QK L LDP ++E K+
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSA 62
Y EA++ A+E DP +EA+++ G+ + +K L A++ ++
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 63 LKLYDSGEYTKPLEYIDKVV 82
Y G+Y + +EY K +
Sbjct: 85 NAYYKQGDYDEAIEYYQKAL 104
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353
R Y +LGV TA+ ++IK AY + +HPD+N + E AE +F I+ AY VLG
Sbjct: 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE-RFTRISQAYVVLGSAT 74
Query: 354 KRARYDRG 361
R +YDRG
Sbjct: 75 LRRKYDRG 82
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184
EA + G AYY D+D A ++QK L LDP +E A++ L N K +G
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYK---------QG 49
Query: 185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244
A+E ++ AL LDP + + L K G +A+ +AL ++ EA
Sbjct: 50 DYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Query: 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274
G A D++ A+E + A + P+
Sbjct: 106 WYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
DY AI L+ D + EA + G AYY D+D A ++QK L LDP +E A+
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AW 72
Query: 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224
+ L N K +G A+E ++ AL LDP + + L K G
Sbjct: 73 YNLGNAYYK---------QGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDY 119
Query: 225 KDALSSCTEALNIN 238
+A+ +AL ++
Sbjct: 120 DEAIEYYQKALELD 133
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 34/152 (22%)
Query: 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL 63
Y EA++ A+E DP +EA+++ G+
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAY------------------------------- 45
Query: 64 KLYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAISETGYLLKEDENN 123
Y G+Y + +EY K L P + DY AI L+ D +
Sbjct: 46 --YKQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102
Query: 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155
EA + G AYY D+D A ++QK L LDP
Sbjct: 103 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354
+D+Y +LG + +S+ +I +K AL+ HPDK+ +N + E F+++ A E+L +++
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVET-FQKLQKAKEILTNEES 78
Query: 355 RARYD 359
RARYD
Sbjct: 79 RARYD 83
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
N+ EA + G AYY D+D A ++QK L LDP ++E A++ L N K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYK-------- 55
Query: 182 SKGKLRVAVEDFKAALALDPNHT 204
+G A+E ++ AL LDPN+
Sbjct: 56 -QGDYDEAIEYYQKALELDPNNA 77
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162
DY AI L+ D NN EA + G AYY D+D A ++QK L LDP ++E K+
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 65 LYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAISETGYLLKEDENNL 124
Y G+Y K +EY K L P + DY AI L+ D NN
Sbjct: 19 YYKQGDYQKAIEYYQKA-LELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNA 77
Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162
+A RG AYY D+ A +QK L LDP +++ K+
Sbjct: 78 KAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
N+ EA + G AYY D+ A ++QK L LDP ++ A++ L N K
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNAS---AWYNLGNAYYK-------- 55
Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
+G + A+E ++ AL LDPN N + K G + A+ +AL ++
Sbjct: 56 -QGDYQKAIEYYQKALELDPN----NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Query: 242 IEALVQRGEAK 252
+A G AK
Sbjct: 111 AKAKQNLGNAK 121
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
+G + A+E ++ AL LDPN N + L K G + A+ +AL ++
Sbjct: 22 QGDYQKAIEYYQKALELDPN----NASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNA 77
Query: 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287
+A +RG A D++ A+ED + A + P + ++ L A++
Sbjct: 78 KAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 7 ALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKL 65
A+D N+A EA L AY+ +G + + +K L A + ++
Sbjct: 2 AMDPGNSA-EAWKNLGNAYYKQGDYQKAI-------EYYQKALELDPNNASAWYNLGNAY 53
Query: 66 YDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAISETGYLLKEDENNLE 125
Y G+Y K +EY K L P + DY AI + L+ D NN +
Sbjct: 54 YKQGDYQKAIEYYQKA-LELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAK 112
Query: 126 ALLHRGRA 133
A + G A
Sbjct: 113 AKQNLGNA 120
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181
N+ EA + G AYY D+D A ++QK L L P ++E A++ L N K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE---AWYNLGNAYYK-------- 55
Query: 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241
+G A+E ++ AL L PN N + L K G +A+ +AL +
Sbjct: 56 -QGDYDEAIEYYQKALELYPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
Query: 242 IEALVQRGEAK 252
EA G AK
Sbjct: 111 AEAKQNLGNAK 121
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSXXXXXXXXXXXXXXDYASAISETG 114
A++ ++ Y G+Y + +EY K + ++ P + DY AI
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELY-PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 115 YLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162
L+ NN EA + G AYY D+D A ++QK L L P ++E K+
Sbjct: 68 KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 187 RVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV 246
R A ED A L P A + L +G CK+ K+ + A+ SC EAL I+ +AL
Sbjct: 257 RAAAEDADGA-KLQP--VALSCVLNIGACKL--KMSDWQGAVDSCLEALEIDPSNTKALY 311
Query: 247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKD 296
+R + ++++ A+ DLK A + +P+D I+ L++ ++ +K K K+
Sbjct: 312 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 296 DWYKILGVSKTA-SISEIKRAYKKLALQWHPDKNVDNREE---AENKFREIAAAYEVLGD 351
+ Y +L V++ ++ +AY+ LA + HPD+ V N+EE AE +FR IA AYE L D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRVIATAYETLKD 74
Query: 352 DDKRARYD 359
D+ + YD
Sbjct: 75 DEAKTNYD 82
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 208 VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKS 267
HL + C L+KL R +A+ C L E+ +AL +RG+AK + A +D +
Sbjct: 232 CHLNIAAC--LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289
Query: 268 AAQQSPQDMNIR---EALMRAEKALKMSKRKDWYK 299
A + +P D IR AL EKAL K+K+ YK
Sbjct: 290 AQKYAPDDKAIRRELRALAEQEKAL-YQKQKEMYK 323
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165
Y AI +L E+E N +AL RG+A L D A+ F+K + P+ +++
Sbjct: 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305
Query: 166 AL----KNLLKKTKSAEDNVSKGK 185
AL K L +K K + KGK
Sbjct: 306 ALAEQEKALYQKQKEMYKGIFKGK 329
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184
EA + G AYY D+D A ++QK L LDP +E A++ L N K +G
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYK---------QG 51
Query: 185 KLRVAVEDFKAALALDP 201
A+E ++ AL LDP
Sbjct: 52 DYDEAIEYYQKALELDP 68
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155
DY AI L+ D + EA + G AYY D+D A ++QK L LDP
Sbjct: 18 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 284 RAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIA 343
+A+ ++ KD + +LGV AS E+ +AY+KLA+ HPDK V +E+ F+ +
Sbjct: 16 QADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV--APGSEDAFKAVV 73
Query: 344 AAYEVL 349
A L
Sbjct: 74 NARTAL 79
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 211 YLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270
+L L +KL A+ C +AL ++ + L +RGEA+LL ++E A D + +
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 271 QSPQDMNIREALMRAEKALKMSKRKD 296
+PQ+ R + +K K +D
Sbjct: 380 VNPQNKAARLQIFMCQKKAKEHNERD 405
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 211 YLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270
+L L +KL A+ C +AL ++ + L +RGEA+LL ++E A D + +
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 271 QSPQDMNIREALMRAEKALKMSKRKD 296
+PQ+ R + +K K +D
Sbjct: 380 VNPQNKAARLQISMCQKKAKEHNERD 405
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
HL L +C + KL A+ SC +AL ++ + L +RGEA L D+E A D +
Sbjct: 199 HLNLAMCHL--KLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKV 256
Query: 269 AQQSPQD 275
Q P +
Sbjct: 257 LQLYPNN 263
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155
+++AI L+ D NN + L RG A+ + D ++A+ FQK L+L P
Sbjct: 212 FSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYP 261
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
LK D NN HRG+ + L ++D A + F K LDPE+
Sbjct: 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
DY A + LK D N A L R Y YL +D AQ F++ L + P+ +E+ Y
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82
Query: 165 --FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH-TAHNVHLYLGLC 215
F L + +S + F ALA DP + T + +L G+C
Sbjct: 83 GWFLCGRLNRPAES-------------MAYFDKALA-DPTYPTPYIANLNKGIC 122
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268
HL L +C + KL A+ SC +AL ++ + L +RGEA L D+E A D +
Sbjct: 199 HLNLAMCHL--KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256
Query: 269 AQQSPQD 275
Q P +
Sbjct: 257 LQLYPNN 263
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155
+++AI L+ D NN + L RG A+ + D ++A+ FQK L+L P
Sbjct: 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
DY AI +LK D+NN++AL G A Y + A+ + K L+P + +++ +Y
Sbjct: 103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 162
Query: 165 FALKNLLKKTK 175
N LK+ +
Sbjct: 163 ELCVNKLKEAR 173
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
HRG+ Y+ L D+ A+ FQK L+PE+
Sbjct: 311 HRGQMYFILQDYKNAKEDFQKAQSLNPEN 339
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 203 HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV 262
H N +++L L L ++ +A+++N E RG+ + +D++ A
Sbjct: 269 HPTPNSYIFLAL--TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 326
Query: 263 EDLKSAAQQSPQDM 276
ED + A +P+++
Sbjct: 327 EDFQKAQSLNPENV 340
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 310 SEIKRAYKKLALQWHPDKNVDNREEAENKFREI 342
SE K+ ++L L+WHPDKN +N + A F+ +
Sbjct: 31 SERKKIIRRLYLKWHPDKNPENHDIANEVFKHL 63
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEH 157
HRG+ Y+ L D+ A+ FQK L+PE+
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 203 HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV 262
H N +++L L L ++ +A+++N E RG+ + +D++ A
Sbjct: 273 HPTPNSYIFLAL--TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330
Query: 263 EDLKSAAQQSPQDM 276
ED + A +P+++
Sbjct: 331 EDFQKAQSLNPENV 344
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
D+ AI +LK D NN+E LL G+ Y + + A +K + LD +E AY
Sbjct: 20 DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---AY 76
Query: 165 FALK--NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG 222
+ L N + K A A++ + A+AL N + + LGL V +G
Sbjct: 77 YILGSANFMIDEKQA-----------AIDALQRAIAL--NTVYADAYYKLGL--VYDSMG 121
Query: 223 RGKDALSSCTEALNINEELIEALVQRGEA 251
A+ + + ++I I A G A
Sbjct: 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLA 150
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 211 YLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270
Y L V + G+ ++A+ AL + + I+ + A + D EGAV+ SA Q
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 271 QSPQDMNIREALMRAEKAL 289
+P +R L KAL
Sbjct: 130 YNPDLYCVRSDLGNLLKAL 148
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 50/154 (32%)
Query: 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRV 188
++G Y+ D+ A RH+ + ++ DPE
Sbjct: 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPE-------------------------------- 45
Query: 189 AVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR 248
N LY L KL + AL C + ++ + I+ +++
Sbjct: 46 ------------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87
Query: 249 GEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL 282
+ +W A + A Q P + RE +
Sbjct: 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
>pdb|3ED6|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
pdb|3ED6|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
pdb|3FG0|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
Length = 520
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 8 LDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEK 47
DD + + D L+ YFH G V R+ +NS+ +K
Sbjct: 289 FDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIKDK 328
>pdb|3B3D|A Chain A, B.Subtilis Ytbe
pdb|3B3D|B Chain B, B.Subtilis Ytbe
pdb|3B3D|C Chain C, B.Subtilis Ytbe
Length = 314
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 8 LDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ 56
L+DL TA E P +++ FH ++L R + + S L+Q Q
Sbjct: 186 LEDLMTAAEIKPMINQVEFHPRLTQKELIRYCQNQGIQMEAWSPLMQGQ 234
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242
+G + AV ++ AL + P A + L VL + G+ ++AL EA+ I+
Sbjct: 22 QGNIEEAVRLYRKALEVFPEFAA----AHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77
Query: 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSP--------------QDMNIREALMRAEKA 288
+A G +D +GA++ A Q +P NI EA+ A
Sbjct: 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137
Query: 289 LKM 291
LK+
Sbjct: 138 LKL 140
>pdb|3NUQ|A Chain A, Structure Of A Putative Nucleotide Phosphatase From
Saccharomyces Cerevisiae
Length = 282
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164
D A+ +E + +++ +LE+L H G + D D++ P++ LK +
Sbjct: 11 DLATYQNEVNEQIAKNKAHLESLTHPGSKVTFPIDQDISAT---------PQNPNLKVFF 61
Query: 165 FALKNLLKKTKS-AEDNVSKGKLRVAVEDFKAALALDP 201
F + N L K+ + D + + LR F+ L L P
Sbjct: 62 FDIDNCLYKSSTRIHDLMQQSILRF----FQTHLKLSP 95
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155
+Y + +L + ++N++A RG+A+ + + AQ F K L LDP
Sbjct: 81 EYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 131
>pdb|3GQ2|A Chain A, Crystal Structure Of The Dimer Of The P115 Tether Globular
Head Domain
pdb|3GQ2|B Chain B, Crystal Structure Of The Dimer Of The P115 Tether Globular
Head Domain
pdb|3GRL|A Chain A, Crystal Structure Of The Monomer Of The P115 Tether
Globular Head Domain
Length = 651
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 207 NVHLYLGLCKVLVKLGRGKDALSSCTEAL---NINEELIEALVQRG-EAKLLTEDWEGAV 262
N+HL L L +VLV A SSC +A+ + ++L L+ G A +LTE
Sbjct: 279 NLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVS 338
Query: 263 EDLKSA 268
E ++
Sbjct: 339 EVIRGC 344
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 274 QDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNRE 333
++ NIR L L + K +K +G + + ++K+ Y+K L HPDK
Sbjct: 17 KERNIRALLSTXHTVLWAGETK--WKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPY 74
Query: 334 E--AENKFREIAAAYEVLGDDDKRARY 358
E A+ F E+ A+ + ++ Y
Sbjct: 75 EQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155
+Y + +L + ++N++A RG+A+ + + AQ F K L LDP
Sbjct: 75 EYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSV 31
+ + EA+ D N AIE DP AY + +
Sbjct: 51 LMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81
>pdb|2W3C|A Chain A, Globular Head Region Of The Human General Vesicular
Transport Factor P115
Length = 577
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 207 NVHLYLGLCKVLVKLGRGKDALSSCTEAL---NINEELIEALVQRG-EAKLLTEDWEGAV 262
N+HL L L +VLV A SSC +A+ + ++L L+ G A +LTE
Sbjct: 227 NLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVS 286
Query: 263 EDLKSA 268
E ++
Sbjct: 287 EVIRGC 292
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 4 YSEALDDLNTAIEADPTLSEAYFHRGSV 31
+ EA+ D N AIE DP AY + +
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATA 216
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 277 NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREE-- 334
NIR L L + K +K +G++ + ++K+ Y+K L HPDK E
Sbjct: 33 NIRALLSTMHTVLWAGETK--WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQY 90
Query: 335 AENKFREIAAAYEVLGDDDKRARY 358
A+ F E+ A+ + ++ Y
Sbjct: 91 AKMIFMELNDAWSEFENQGQKPLY 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,840,775
Number of Sequences: 62578
Number of extensions: 359791
Number of successful extensions: 1091
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 140
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)