Query 043837
Match_columns 409
No_of_seqs 811 out of 4627
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 08:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0624 dsRNA-activated protei 100.0 1.7E-62 3.7E-67 403.8 38.3 401 1-409 85-503 (504)
2 KOG0550 Molecular chaperone (D 100.0 2.6E-56 5.6E-61 375.8 30.5 402 2-409 63-486 (486)
3 KOG4626 O-linked N-acetylgluco 100.0 2.4E-36 5.2E-41 267.2 23.9 272 2-290 232-504 (966)
4 KOG4626 O-linked N-acetylgluco 100.0 1.1E-35 2.4E-40 263.1 24.0 309 2-328 164-490 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 3.5E-28 7.5E-33 235.4 40.0 259 1-276 173-501 (615)
6 PRK15174 Vi polysaccharide exp 100.0 5.1E-28 1.1E-32 233.7 38.4 336 2-358 56-413 (656)
7 TIGR00990 3a0801s09 mitochondr 100.0 7.2E-28 1.6E-32 233.2 34.3 266 2-280 308-580 (615)
8 KOG0624 dsRNA-activated protei 100.0 1.9E-27 4.2E-32 197.1 31.5 289 2-304 52-371 (504)
9 PRK11447 cellulose synthase su 100.0 3.3E-27 7.1E-32 242.8 39.8 275 1-288 282-683 (1157)
10 PRK15174 Vi polysaccharide exp 100.0 1.3E-26 2.9E-31 223.9 36.2 257 2-275 90-385 (656)
11 KOG1126 DNA-binding cell divis 100.0 8E-28 1.7E-32 215.9 24.0 273 3-294 334-609 (638)
12 PRK11788 tetratricopeptide rep 100.0 4.3E-25 9.4E-30 203.4 36.0 266 2-284 49-324 (389)
13 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-24 5.3E-29 219.6 40.5 270 1-287 35-340 (899)
14 KOG0547 Translocase of outer m 100.0 1.8E-25 3.9E-30 193.5 27.0 209 66-291 337-552 (606)
15 TIGR02917 PEP_TPR_lipo putativ 100.0 5.6E-25 1.2E-29 224.3 35.5 275 1-294 580-855 (899)
16 PRK11447 cellulose synthase su 100.0 5.3E-25 1.2E-29 226.6 35.3 259 1-276 364-705 (1157)
17 PRK09782 bacteriophage N4 rece 99.9 1.4E-24 3E-29 214.6 35.1 264 6-289 459-724 (987)
18 KOG1155 Anaphase-promoting com 99.9 1.7E-24 3.6E-29 186.5 28.0 301 4-321 243-552 (559)
19 KOG1126 DNA-binding cell divis 99.9 1.8E-25 3.8E-30 201.0 20.2 261 1-278 366-627 (638)
20 PRK09782 bacteriophage N4 rece 99.9 2.5E-24 5.3E-29 212.8 29.9 267 2-288 490-756 (987)
21 KOG0547 Translocase of outer m 99.9 5.4E-24 1.2E-28 184.5 25.1 169 90-274 326-494 (606)
22 PRK10049 pgaA outer membrane p 99.9 6.5E-22 1.4E-26 195.3 39.2 324 1-355 62-479 (765)
23 KOG0548 Molecular co-chaperone 99.9 3.8E-22 8.2E-27 175.5 30.1 223 61-289 230-473 (539)
24 PRK10049 pgaA outer membrane p 99.9 1.9E-21 4.1E-26 192.1 38.8 307 1-327 28-426 (765)
25 KOG1155 Anaphase-promoting com 99.9 1.7E-22 3.6E-27 174.3 26.4 269 2-287 276-552 (559)
26 KOG1173 Anaphase-promoting com 99.9 1.6E-22 3.5E-27 178.5 25.9 273 2-288 258-535 (611)
27 PRK12370 invasion protein regu 99.9 3E-22 6.5E-27 190.7 26.6 226 3-271 276-502 (553)
28 KOG0548 Molecular co-chaperone 99.9 3.2E-21 6.9E-26 169.7 30.0 318 2-328 16-478 (539)
29 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.8E-25 173.7 35.7 252 23-289 36-295 (389)
30 PRK11189 lipoprotein NlpI; Pro 99.9 2.3E-21 5.1E-26 169.9 27.9 212 55-288 64-283 (296)
31 PF13429 TPR_15: Tetratricopep 99.9 8E-24 1.7E-28 185.2 12.2 253 1-271 21-277 (280)
32 KOG0550 Molecular chaperone (D 99.9 2.5E-22 5.3E-27 170.9 19.1 280 55-350 49-398 (486)
33 KOG2003 TPR repeat-containing 99.9 3.7E-20 8.1E-25 159.6 30.2 270 1-288 289-638 (840)
34 KOG2002 TPR-containing nuclear 99.9 2.7E-20 5.9E-25 174.0 30.8 284 4-291 252-579 (1018)
35 KOG1129 TPR repeat-containing 99.9 6.1E-22 1.3E-26 163.6 17.5 239 26-278 227-465 (478)
36 COG0484 DnaJ DnaJ-class molecu 99.9 5.6E-23 1.2E-27 176.7 8.7 71 294-365 3-73 (371)
37 PRK12370 invasion protein regu 99.9 2.2E-20 4.8E-25 178.0 26.7 202 69-287 275-486 (553)
38 KOG1174 Anaphase-promoting com 99.9 3.7E-20 8.1E-25 157.7 24.7 272 2-290 246-519 (564)
39 KOG1125 TPR repeat-containing 99.9 7.2E-21 1.6E-25 168.9 20.6 229 58-291 288-557 (579)
40 KOG2002 TPR-containing nuclear 99.9 6E-20 1.3E-24 171.7 27.7 276 4-292 146-430 (1018)
41 KOG2076 RNA polymerase III tra 99.9 5.1E-19 1.1E-23 164.5 32.8 285 2-291 153-498 (895)
42 TIGR02521 type_IV_pilW type IV 99.9 1.4E-19 3E-24 154.4 26.5 202 55-273 31-234 (234)
43 KOG2003 TPR repeat-containing 99.9 3.6E-19 7.7E-24 153.7 28.5 212 59-287 494-705 (840)
44 TIGR00540 hemY_coli hemY prote 99.9 5.6E-19 1.2E-23 162.4 31.7 274 2-291 98-385 (409)
45 COG3063 PilF Tfp pilus assembl 99.9 1.6E-19 3.5E-24 142.8 23.9 210 54-278 34-243 (250)
46 COG3063 PilF Tfp pilus assembl 99.9 7.7E-20 1.7E-24 144.5 21.4 187 90-290 35-221 (250)
47 PRK14574 hmsH outer membrane p 99.9 3.8E-18 8.3E-23 166.0 37.0 286 1-291 47-465 (822)
48 PF13429 TPR_15: Tetratricopep 99.9 2.2E-21 4.7E-26 169.9 12.5 255 16-291 4-263 (280)
49 COG2956 Predicted N-acetylgluc 99.9 4.8E-18 1E-22 140.6 28.9 261 2-279 49-319 (389)
50 PLN02789 farnesyltranstransfer 99.8 1.5E-18 3.3E-23 151.6 26.5 212 2-255 51-268 (320)
51 TIGR02521 type_IV_pilW type IV 99.8 3.2E-18 6.9E-23 145.9 27.1 188 88-289 29-216 (234)
52 KOG1173 Anaphase-promoting com 99.8 1.7E-18 3.7E-23 153.3 25.4 279 20-316 242-532 (611)
53 PLN02789 farnesyltranstransfer 99.8 6.9E-18 1.5E-22 147.5 27.5 206 66-288 48-267 (320)
54 KOG1125 TPR repeat-containing 99.8 2.3E-19 4.9E-24 159.5 17.1 242 2-260 299-560 (579)
55 KOG0495 HAT repeat protein [RN 99.8 8.5E-18 1.8E-22 151.1 27.2 267 2-289 598-864 (913)
56 PRK10747 putative protoheme IX 99.8 3.8E-17 8.2E-22 149.5 31.8 248 26-291 88-376 (398)
57 KOG1129 TPR repeat-containing 99.8 1.2E-19 2.5E-24 150.3 13.1 238 1-253 236-474 (478)
58 PRK11189 lipoprotein NlpI; Pro 99.8 1E-17 2.3E-22 146.9 23.9 232 3-255 41-284 (296)
59 KOG0495 HAT repeat protein [RN 99.8 2.6E-16 5.6E-21 141.8 30.5 257 2-276 530-787 (913)
60 KOG1174 Anaphase-promoting com 99.8 1.7E-16 3.7E-21 135.6 27.8 268 6-291 216-486 (564)
61 TIGR00540 hemY_coli hemY prote 99.8 8.9E-17 1.9E-21 147.9 27.3 257 1-271 131-399 (409)
62 KOG4162 Predicted calmodulin-b 99.8 7.6E-17 1.6E-21 147.9 25.9 257 4-277 460-789 (799)
63 KOG1840 Kinesin light chain [C 99.8 9.7E-17 2.1E-21 146.3 26.6 244 18-271 195-479 (508)
64 PRK10747 putative protoheme IX 99.8 2.8E-16 6.1E-21 143.8 28.1 250 2-272 98-391 (398)
65 PRK14574 hmsH outer membrane p 99.8 5E-16 1.1E-20 151.4 31.1 206 61-279 298-521 (822)
66 TIGR03302 OM_YfiO outer membra 99.8 1.1E-16 2.4E-21 136.5 22.5 186 54-273 32-234 (235)
67 KOG0712 Molecular chaperone (D 99.8 9E-19 1.9E-23 148.6 6.7 66 294-363 3-68 (337)
68 KOG0713 Molecular chaperone (D 99.8 1.8E-18 3.9E-23 144.6 7.9 69 293-362 14-82 (336)
69 KOG0553 TPR repeat-containing 99.8 3.8E-17 8.2E-22 134.8 14.8 124 166-293 77-200 (304)
70 KOG2076 RNA polymerase III tra 99.7 1.3E-15 2.9E-20 142.1 26.4 259 1-272 186-513 (895)
71 COG2956 Predicted N-acetylgluc 99.7 1.1E-14 2.4E-19 121.0 28.5 225 55-293 35-266 (389)
72 KOG4162 Predicted calmodulin-b 99.7 5.1E-15 1.1E-19 136.0 26.4 286 4-294 373-772 (799)
73 KOG1840 Kinesin light chain [C 99.7 2.8E-15 6.2E-20 136.8 24.7 226 1-237 212-479 (508)
74 KOG1156 N-terminal acetyltrans 99.7 6.6E-14 1.4E-18 126.5 31.4 280 2-282 21-445 (700)
75 PRK15359 type III secretion sy 99.7 3.4E-16 7.3E-21 121.5 14.7 99 184-286 38-136 (144)
76 PRK15359 type III secretion sy 99.7 6.3E-16 1.4E-20 120.0 15.5 120 110-255 13-139 (144)
77 cd05804 StaR_like StaR_like; a 99.7 3.3E-14 7.2E-19 129.4 29.1 209 17-239 1-217 (355)
78 PRK10370 formate-dependent nit 99.7 8.1E-15 1.8E-19 120.0 20.2 159 97-282 23-184 (198)
79 KOG1127 TPR repeat-containing 99.7 5.2E-15 1.1E-19 139.2 20.7 280 5-290 509-898 (1238)
80 KOG0553 TPR repeat-containing 99.7 1.2E-15 2.5E-20 126.1 13.8 164 4-174 31-196 (304)
81 cd05804 StaR_like StaR_like; a 99.7 6.7E-14 1.5E-18 127.4 26.3 264 1-272 56-337 (355)
82 KOG1156 N-terminal acetyltrans 99.7 2.4E-14 5.1E-19 129.3 22.5 250 25-287 10-264 (700)
83 PLN03218 maturation of RBCL 1; 99.7 4E-12 8.7E-17 127.8 39.5 251 2-270 451-712 (1060)
84 PLN03218 maturation of RBCL 1; 99.7 1.5E-12 3.3E-17 130.8 36.5 260 1-279 485-758 (1060)
85 KOG2376 Signal recognition par 99.6 7.2E-13 1.6E-17 118.7 29.3 190 2-204 26-258 (652)
86 TIGR03302 OM_YfiO outer membra 99.6 4.4E-14 9.6E-19 120.5 21.0 174 18-201 29-234 (235)
87 PRK15179 Vi polysaccharide bio 99.6 1.1E-13 2.3E-18 132.8 24.6 198 21-244 27-224 (694)
88 KOG3060 Uncharacterized conser 99.6 6.3E-13 1.4E-17 107.0 24.8 205 67-288 24-237 (289)
89 PRK10370 formate-dependent nit 99.6 1.5E-13 3.2E-18 112.6 21.1 121 69-202 53-176 (198)
90 PRK14296 chaperone protein Dna 99.6 1E-15 2.2E-20 136.8 9.1 67 294-362 3-69 (372)
91 PRK14288 chaperone protein Dna 99.6 5.4E-16 1.2E-20 138.6 7.3 67 295-362 3-69 (369)
92 PLN03081 pentatricopeptide (PP 99.6 3E-13 6.5E-18 133.6 27.2 266 2-290 273-542 (697)
93 TIGR02552 LcrH_SycD type III s 99.6 2.6E-14 5.7E-19 110.6 15.6 129 145-289 4-132 (135)
94 PRK14720 transcript cleavage f 99.6 1.3E-13 2.9E-18 133.1 22.8 239 2-288 45-303 (906)
95 PF04733 Coatomer_E: Coatomer 99.6 1.1E-14 2.5E-19 125.8 14.1 259 1-281 14-275 (290)
96 KOG1130 Predicted G-alpha GTPa 99.6 1.1E-14 2.3E-19 124.8 12.7 282 1-292 30-371 (639)
97 COG3071 HemY Uncharacterized e 99.6 4.3E-12 9.4E-17 108.8 28.1 117 2-119 98-216 (400)
98 COG5010 TadD Flp pilus assembl 99.6 2.2E-13 4.9E-18 110.6 19.4 169 82-267 59-227 (257)
99 KOG3785 Uncharacterized conser 99.6 1.2E-12 2.7E-17 110.2 24.3 254 1-265 70-451 (557)
100 KOG3060 Uncharacterized conser 99.6 1.6E-12 3.5E-17 104.7 23.9 179 60-255 57-238 (289)
101 PRK15179 Vi polysaccharide bio 99.6 1.3E-13 2.9E-18 132.2 21.0 155 106-276 68-222 (694)
102 PF12569 NARP1: NMDA receptor- 99.6 6.4E-12 1.4E-16 116.5 30.3 254 22-288 4-274 (517)
103 KOG1127 TPR repeat-containing 99.6 8.7E-13 1.9E-17 124.6 24.4 205 68-287 471-675 (1238)
104 PRK14279 chaperone protein Dna 99.6 4.2E-15 9.2E-20 133.8 8.8 67 295-362 9-75 (392)
105 PLN03081 pentatricopeptide (PP 99.6 1.5E-12 3.2E-17 128.7 27.5 247 1-271 303-557 (697)
106 PLN03077 Protein ECB2; Provisi 99.6 1.1E-11 2.5E-16 125.4 33.2 167 99-286 533-701 (857)
107 PRK14286 chaperone protein Dna 99.6 6.7E-15 1.5E-19 131.7 8.8 67 295-362 4-70 (372)
108 PRK14287 chaperone protein Dna 99.6 5.2E-15 1.1E-19 132.4 7.7 66 295-362 4-69 (371)
109 KOG1308 Hsp70-interacting prot 99.6 1.3E-14 2.8E-19 121.6 9.4 103 168-274 112-214 (377)
110 KOG1128 Uncharacterized conser 99.6 1.5E-12 3.2E-17 119.5 22.4 223 19-272 395-617 (777)
111 TIGR02552 LcrH_SycD type III s 99.6 2.3E-13 5E-18 105.3 14.8 116 112-243 5-120 (135)
112 PRK14720 transcript cleavage f 99.5 3E-12 6.5E-17 123.9 25.3 237 18-319 27-303 (906)
113 PRK14282 chaperone protein Dna 99.5 1.6E-14 3.5E-19 129.4 8.9 69 294-362 3-71 (369)
114 PRK14297 chaperone protein Dna 99.5 1.8E-14 4E-19 129.7 9.0 67 295-362 4-70 (380)
115 PF12569 NARP1: NMDA receptor- 99.5 2.2E-11 4.8E-16 112.9 28.8 255 1-272 17-335 (517)
116 PRK14284 chaperone protein Dna 99.5 2.8E-14 6.2E-19 128.8 9.4 67 296-363 2-68 (391)
117 PRK14298 chaperone protein Dna 99.5 2.9E-14 6.2E-19 127.8 8.8 67 294-362 4-70 (377)
118 PRK14281 chaperone protein Dna 99.5 3.2E-14 6.9E-19 128.6 8.9 67 295-362 3-69 (397)
119 PRK14285 chaperone protein Dna 99.5 2E-14 4.4E-19 128.3 7.5 68 295-363 3-70 (365)
120 COG5010 TadD Flp pilus assembl 99.5 3.7E-12 8E-17 103.6 19.5 170 105-291 48-217 (257)
121 PRK14301 chaperone protein Dna 99.5 2.4E-14 5.2E-19 128.3 7.7 67 295-362 4-70 (373)
122 PRK14295 chaperone protein Dna 99.5 3.9E-14 8.5E-19 127.5 9.0 65 295-360 9-73 (389)
123 PRK15363 pathogenicity island 99.5 7.6E-13 1.6E-17 100.6 14.5 121 151-287 27-148 (157)
124 PRK14277 chaperone protein Dna 99.5 4.1E-14 8.8E-19 127.5 8.8 68 294-362 4-71 (386)
125 PRK10767 chaperone protein Dna 99.5 5.6E-14 1.2E-18 126.4 8.9 68 294-362 3-70 (371)
126 PRK14299 chaperone protein Dna 99.5 3.5E-14 7.7E-19 123.0 7.3 68 294-363 3-70 (291)
127 PRK10866 outer membrane biogen 99.5 1.3E-11 2.8E-16 104.3 22.5 178 54-265 31-235 (243)
128 PRK15363 pathogenicity island 99.5 1.8E-12 4E-17 98.5 15.3 105 53-158 33-137 (157)
129 PRK14276 chaperone protein Dna 99.5 4.2E-14 9.2E-19 127.2 7.2 66 295-362 4-69 (380)
130 PRK14289 chaperone protein Dna 99.5 8.9E-14 1.9E-18 125.7 9.3 69 294-363 4-72 (386)
131 PLN03077 Protein ECB2; Provisi 99.5 5E-11 1.1E-15 120.7 30.0 242 2-271 438-720 (857)
132 PRK14278 chaperone protein Dna 99.5 3.9E-14 8.5E-19 127.1 6.6 67 295-363 3-69 (378)
133 PLN03088 SGT1, suppressor of 99.5 8.4E-13 1.8E-17 118.5 15.1 113 175-291 7-119 (356)
134 PRK14280 chaperone protein Dna 99.5 6.4E-14 1.4E-18 125.8 7.3 66 295-362 4-69 (376)
135 PTZ00037 DnaJ_C chaperone prot 99.5 6.8E-14 1.5E-18 126.3 7.3 64 294-362 27-90 (421)
136 PF04733 Coatomer_E: Coatomer 99.5 3E-12 6.4E-17 110.9 16.8 273 30-344 9-287 (290)
137 KOG1128 Uncharacterized conser 99.5 2.9E-12 6.3E-17 117.6 16.6 196 60-287 403-598 (777)
138 PRK14294 chaperone protein Dna 99.5 1.2E-13 2.6E-18 123.7 7.6 68 294-362 3-70 (366)
139 COG4783 Putative Zn-dependent 99.5 5.7E-11 1.2E-15 104.8 23.6 153 87-272 303-455 (484)
140 PRK14283 chaperone protein Dna 99.5 1.9E-13 4.2E-18 123.0 8.6 67 294-362 4-70 (378)
141 PRK14290 chaperone protein Dna 99.5 1.7E-13 3.6E-18 122.8 7.9 68 295-362 3-70 (365)
142 KOG4648 Uncharacterized conser 99.4 6.3E-14 1.4E-18 117.4 4.6 224 56-285 98-344 (536)
143 PF13525 YfiO: Outer membrane 99.4 2.9E-11 6.2E-16 99.9 20.4 170 54-225 4-195 (203)
144 KOG4234 TPR repeat-containing 99.4 2.6E-12 5.7E-17 99.6 13.1 122 166-287 91-213 (271)
145 PLN03088 SGT1, suppressor of 99.4 3.2E-12 6.9E-17 114.8 15.8 113 58-174 5-117 (356)
146 COG4783 Putative Zn-dependent 99.4 2.7E-11 5.8E-16 106.9 20.8 156 119-290 301-456 (484)
147 KOG3785 Uncharacterized conser 99.4 7.7E-12 1.7E-16 105.6 16.7 262 2-269 36-343 (557)
148 COG3071 HemY Uncharacterized e 99.4 3.4E-09 7.4E-14 91.4 32.7 256 27-291 89-376 (400)
149 PF00226 DnaJ: DnaJ domain; I 99.4 3.2E-13 7E-18 88.9 6.4 64 296-359 1-64 (64)
150 KOG1915 Cell cycle control pro 99.4 9.5E-09 2.1E-13 90.4 35.4 178 82-273 314-502 (677)
151 KOG2376 Signal recognition par 99.4 5.5E-11 1.2E-15 106.9 22.3 231 23-277 13-259 (652)
152 KOG0543 FKBP-type peptidyl-pro 99.4 4.1E-12 9E-17 109.8 14.4 127 166-292 204-341 (397)
153 TIGR02349 DnaJ_bact chaperone 99.4 4.3E-13 9.3E-18 120.2 8.4 65 296-362 1-65 (354)
154 KOG0717 Molecular chaperone (D 99.4 3E-13 6.5E-18 117.4 7.0 71 293-363 6-76 (508)
155 PRK14291 chaperone protein Dna 99.4 2.2E-13 4.8E-18 122.6 6.5 67 295-363 3-69 (382)
156 PRK10866 outer membrane biogen 99.4 5.7E-11 1.2E-15 100.4 20.2 181 88-289 30-222 (243)
157 KOG4340 Uncharacterized conser 99.4 1.8E-09 3.9E-14 89.5 27.1 260 2-265 24-333 (459)
158 PRK14292 chaperone protein Dna 99.4 9.1E-13 2E-17 118.6 8.7 67 295-363 2-68 (371)
159 PRK04841 transcriptional regul 99.4 7.2E-10 1.6E-14 113.6 30.3 271 1-277 465-766 (903)
160 KOG1915 Cell cycle control pro 99.4 1.1E-08 2.3E-13 90.1 32.4 300 2-304 87-499 (677)
161 PF13525 YfiO: Outer membrane 99.4 1.2E-10 2.5E-15 96.3 19.7 172 89-260 4-196 (203)
162 KOG0691 Molecular chaperone (D 99.4 8.6E-13 1.9E-17 111.5 6.9 67 294-361 4-70 (296)
163 PRK14300 chaperone protein Dna 99.4 6.6E-13 1.4E-17 119.2 5.7 66 295-362 3-68 (372)
164 KOG0718 Molecular chaperone (D 99.3 1.8E-12 3.9E-17 112.7 6.5 68 293-360 7-76 (546)
165 PRK10266 curved DNA-binding pr 99.3 3E-12 6.5E-17 112.0 6.0 66 295-362 4-69 (306)
166 COG4785 NlpI Lipoprotein NlpI, 99.3 3.3E-10 7.1E-15 89.4 16.6 200 50-272 60-267 (297)
167 KOG0719 Molecular chaperone (D 99.3 5.1E-12 1.1E-16 99.7 6.5 73 293-365 12-85 (264)
168 KOG0715 Molecular chaperone (D 99.3 3.5E-12 7.7E-17 109.2 6.1 66 296-363 44-109 (288)
169 KOG0716 Molecular chaperone (D 99.3 4.7E-12 1E-16 102.8 6.2 67 294-361 30-96 (279)
170 PRK14293 chaperone protein Dna 99.3 4E-12 8.7E-17 114.3 6.3 66 295-362 3-68 (374)
171 PF13414 TPR_11: TPR repeat; P 99.3 1.7E-11 3.7E-16 82.4 7.9 67 207-273 2-69 (69)
172 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.3E-10 2.8E-15 87.7 13.1 110 163-282 4-116 (119)
173 KOG3081 Vesicle coat complex C 99.3 6.6E-09 1.4E-13 84.8 23.4 256 1-278 21-278 (299)
174 PF13414 TPR_11: TPR repeat; P 99.3 1.8E-11 3.8E-16 82.3 7.5 67 89-155 2-69 (69)
175 KOG1130 Predicted G-alpha GTPa 99.3 5.7E-11 1.2E-15 102.3 11.6 237 28-273 23-306 (639)
176 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.8E-10 4E-15 86.8 13.2 103 56-159 3-111 (119)
177 KOG4648 Uncharacterized conser 99.2 1.3E-10 2.8E-15 97.9 12.5 117 167-287 94-210 (536)
178 CHL00033 ycf3 photosystem I as 99.2 6E-10 1.3E-14 89.5 15.8 128 69-202 13-152 (168)
179 PF12895 Apc3: Anaphase-promot 99.2 3.5E-11 7.6E-16 84.2 7.4 83 183-268 2-84 (84)
180 PF14938 SNAP: Soluble NSF att 99.2 8.9E-09 1.9E-13 89.9 23.9 172 91-272 76-267 (282)
181 PRK02603 photosystem I assembl 99.2 4.3E-10 9.4E-15 90.6 14.5 117 126-275 37-153 (172)
182 PTZ00341 Ring-infected erythro 99.2 1.7E-11 3.6E-16 116.9 6.9 66 294-361 572-637 (1136)
183 KOG1941 Acetylcholine receptor 99.2 2.9E-08 6.4E-13 84.6 25.4 240 24-272 8-276 (518)
184 KOG0543 FKBP-type peptidyl-pro 99.2 8.3E-10 1.8E-14 95.8 16.1 138 53-201 206-357 (397)
185 PF09976 TPR_21: Tetratricopep 99.2 2.3E-09 4.9E-14 83.7 17.3 132 52-197 8-145 (145)
186 smart00271 DnaJ DnaJ molecular 99.2 4.1E-11 8.9E-16 77.8 6.2 59 296-354 2-60 (60)
187 PRK10153 DNA-binding transcrip 99.2 1E-09 2.2E-14 102.7 17.8 151 118-277 331-488 (517)
188 COG4235 Cytochrome c biogenesi 99.2 1.5E-09 3.3E-14 91.0 16.5 130 140-285 138-270 (287)
189 PRK11906 transcriptional regul 99.2 8.3E-10 1.8E-14 98.2 15.8 159 4-198 274-435 (458)
190 COG4235 Cytochrome c biogenesi 99.2 2E-09 4.3E-14 90.2 17.2 122 106-240 138-259 (287)
191 PF09976 TPR_21: Tetratricopep 99.2 2.6E-09 5.6E-14 83.4 17.0 121 101-235 22-145 (145)
192 PRK04841 transcriptional regul 99.2 9.7E-08 2.1E-12 98.0 33.4 262 1-272 422-721 (903)
193 KOG4340 Uncharacterized conser 99.2 7.1E-10 1.5E-14 91.8 13.8 188 65-271 20-207 (459)
194 PF12895 Apc3: Anaphase-promot 99.2 6.8E-11 1.5E-15 82.8 6.9 81 68-150 2-84 (84)
195 CHL00033 ycf3 photosystem I as 99.2 7.8E-10 1.7E-14 88.8 13.9 106 104-222 13-120 (168)
196 PF13432 TPR_16: Tetratricopep 99.2 1.3E-10 2.9E-15 76.9 7.8 65 212-276 1-65 (65)
197 COG0457 NrfG FOG: TPR repeat [ 99.2 1.6E-07 3.4E-12 80.0 29.2 226 36-274 37-268 (291)
198 KOG3081 Vesicle coat complex C 99.2 4.1E-08 8.9E-13 80.3 23.2 273 30-346 16-295 (299)
199 PRK11906 transcriptional regul 99.2 5E-09 1.1E-13 93.3 19.6 159 94-268 259-433 (458)
200 cd00189 TPR Tetratricopeptide 99.2 7.5E-10 1.6E-14 79.6 12.1 97 93-201 3-99 (100)
201 PF14938 SNAP: Soluble NSF att 99.2 2E-09 4.3E-14 94.0 16.2 175 93-277 38-231 (282)
202 PRK02603 photosystem I assembl 99.2 1.3E-09 2.8E-14 87.8 14.0 86 86-174 31-119 (172)
203 COG4105 ComL DNA uptake lipopr 99.1 4.6E-08 9.9E-13 80.4 22.6 184 54-272 33-233 (254)
204 KOG0721 Molecular chaperone (D 99.1 1.8E-10 3.8E-15 90.4 8.0 74 294-368 98-171 (230)
205 KOG2047 mRNA splicing factor [ 99.1 1.3E-06 2.7E-11 80.2 33.4 191 69-273 361-581 (835)
206 PF13432 TPR_16: Tetratricopep 99.1 1.8E-10 3.9E-15 76.3 7.0 64 95-158 2-65 (65)
207 cd00189 TPR Tetratricopeptide 99.1 1.1E-09 2.4E-14 78.7 11.8 99 163-274 2-100 (100)
208 PRK15331 chaperone protein Sic 99.1 2.1E-09 4.6E-14 82.3 13.5 104 54-159 36-139 (165)
209 cd06257 DnaJ DnaJ domain or J- 99.1 1.6E-10 3.4E-15 73.6 6.1 55 296-351 1-55 (55)
210 COG0457 NrfG FOG: TPR repeat [ 99.1 1.8E-07 3.9E-12 79.7 27.4 221 3-240 38-268 (291)
211 PRK10803 tol-pal system protei 99.1 2.8E-09 6E-14 90.8 15.2 105 55-160 142-253 (263)
212 PRK10153 DNA-binding transcrip 99.1 7.9E-09 1.7E-13 96.8 19.5 142 85-243 332-488 (517)
213 PHA03102 Small T antigen; Revi 99.1 1.5E-10 3.2E-15 88.0 6.1 66 294-364 4-71 (153)
214 PRK15331 chaperone protein Sic 99.1 2.2E-09 4.9E-14 82.1 12.4 108 178-290 45-152 (165)
215 KOG1070 rRNA processing protei 99.1 8.7E-08 1.9E-12 94.6 25.7 214 6-237 1442-1663(1710)
216 PRK10803 tol-pal system protei 99.1 4.8E-09 1E-13 89.4 15.3 105 90-203 142-250 (263)
217 KOG4234 TPR repeat-containing 99.1 8.6E-09 1.9E-13 80.4 14.1 106 53-159 93-203 (271)
218 PF12688 TPR_5: Tetratrico pep 99.0 1.3E-08 2.8E-13 75.1 13.6 101 126-236 3-103 (120)
219 KOG2047 mRNA splicing factor [ 99.0 2.2E-06 4.8E-11 78.7 29.1 223 2-236 361-614 (835)
220 TIGR03835 termin_org_DnaJ term 99.0 5.6E-10 1.2E-14 104.1 6.5 66 295-362 2-67 (871)
221 COG4785 NlpI Lipoprotein NlpI, 99.0 1.8E-07 3.9E-12 74.2 19.2 217 21-256 64-289 (297)
222 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 1.3E-08 2.9E-13 91.1 14.7 128 129-275 174-301 (395)
223 KOG1308 Hsp70-interacting prot 99.0 1.2E-09 2.6E-14 92.2 6.9 91 132-238 122-212 (377)
224 COG4105 ComL DNA uptake lipopr 99.0 1.7E-07 3.7E-12 77.1 18.9 199 88-308 32-237 (254)
225 KOG1070 rRNA processing protei 99.0 2.2E-07 4.8E-12 91.9 22.7 200 73-290 1442-1648(1710)
226 PF13512 TPR_18: Tetratricopep 99.0 2.3E-08 5E-13 75.0 12.4 106 175-281 15-138 (142)
227 PF13512 TPR_18: Tetratricopep 99.0 2.1E-08 4.6E-13 75.2 12.1 106 54-160 9-135 (142)
228 PF13371 TPR_9: Tetratricopept 98.9 6E-09 1.3E-13 70.8 8.1 69 215-283 2-70 (73)
229 PF14559 TPR_19: Tetratricopep 98.9 3.1E-09 6.8E-14 71.0 6.6 65 219-283 2-66 (68)
230 KOG1941 Acetylcholine receptor 98.9 3.8E-07 8.1E-12 78.0 19.8 262 2-273 20-322 (518)
231 KOG0551 Hsp90 co-chaperone CNS 98.9 2E-08 4.2E-13 84.6 11.7 107 171-277 82-188 (390)
232 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 6.2E-08 1.3E-12 86.9 15.5 121 95-234 174-294 (395)
233 PF14559 TPR_19: Tetratricopep 98.9 6.6E-09 1.4E-13 69.5 7.0 58 102-159 3-60 (68)
234 COG4700 Uncharacterized protei 98.9 3.8E-07 8.3E-12 70.6 17.2 153 33-198 67-221 (251)
235 KOG2053 Mitochondrial inherita 98.9 3.6E-06 7.8E-11 80.2 26.5 234 2-275 23-259 (932)
236 PRK05014 hscB co-chaperone Hsc 98.9 5.4E-09 1.2E-13 82.5 6.7 65 296-360 2-72 (171)
237 COG2214 CbpA DnaJ-class molecu 98.9 4.8E-09 1E-13 89.5 6.9 68 294-361 5-72 (237)
238 PF12688 TPR_5: Tetratrico pep 98.9 9.3E-08 2E-12 70.6 12.4 98 163-270 3-103 (120)
239 COG4700 Uncharacterized protei 98.9 2.4E-06 5.3E-11 66.3 20.2 154 100-269 66-220 (251)
240 KOG0722 Molecular chaperone (D 98.8 2.8E-09 6E-14 85.5 4.1 69 294-364 32-100 (329)
241 PF13371 TPR_9: Tetratricopept 98.8 2.1E-08 4.5E-13 68.1 7.9 63 97-159 2-64 (73)
242 PRK01356 hscB co-chaperone Hsc 98.8 8.6E-09 1.9E-13 80.8 6.6 66 295-360 2-71 (166)
243 KOG4642 Chaperone-dependent E3 98.8 2.3E-08 5E-13 80.3 9.0 109 175-287 15-128 (284)
244 KOG0376 Serine-threonine phosp 98.8 7.7E-09 1.7E-13 91.7 6.8 114 174-291 8-121 (476)
245 COG1729 Uncharacterized protei 98.8 1.8E-07 3.9E-12 77.8 13.6 104 177-281 148-254 (262)
246 PRK09430 djlA Dna-J like membr 98.8 2.5E-07 5.5E-12 78.9 14.6 58 294-351 199-262 (267)
247 COG1729 Uncharacterized protei 98.8 1.9E-07 4.1E-12 77.6 12.9 101 93-202 144-247 (262)
248 KOG0720 Molecular chaperone (D 98.8 1.5E-08 3.2E-13 88.8 6.2 66 293-360 233-298 (490)
249 KOG4555 TPR repeat-containing 98.7 1.5E-06 3.3E-11 63.1 15.1 97 58-155 46-146 (175)
250 KOG3617 WD40 and TPR repeat-co 98.7 8.6E-06 1.9E-10 77.0 23.8 254 2-268 814-1171(1416)
251 KOG4555 TPR repeat-containing 98.7 4.3E-07 9.3E-12 65.9 12.1 92 180-275 53-148 (175)
252 COG3898 Uncharacterized membra 98.7 0.00012 2.6E-09 63.7 29.2 263 2-287 98-373 (531)
253 KOG0545 Aryl-hydrocarbon recep 98.7 3.1E-07 6.6E-12 74.3 12.3 105 174-278 182-300 (329)
254 KOG2796 Uncharacterized conser 98.7 2E-05 4.4E-10 64.7 22.6 193 25-275 125-319 (366)
255 PRK00294 hscB co-chaperone Hsc 98.7 4E-08 8.6E-13 77.4 6.6 67 294-360 3-75 (173)
256 PRK03578 hscB co-chaperone Hsc 98.7 4.5E-08 9.8E-13 77.5 6.6 67 294-360 5-77 (176)
257 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1E-07 2.2E-12 85.0 9.4 70 85-154 70-142 (453)
258 PF13424 TPR_12: Tetratricopep 98.7 1E-07 2.2E-12 65.6 7.3 66 207-272 4-76 (78)
259 KOG4642 Chaperone-dependent E3 98.7 9.5E-08 2.1E-12 76.9 7.6 98 55-153 10-107 (284)
260 KOG1586 Protein required for f 98.7 3.2E-05 7E-10 62.4 21.8 143 90-242 74-229 (288)
261 COG5407 SEC63 Preprotein trans 98.7 4.3E-08 9.2E-13 85.5 6.0 75 295-369 98-176 (610)
262 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.3E-07 2.8E-12 84.4 9.1 65 207-271 74-141 (453)
263 PF13281 DUF4071: Domain of un 98.7 2.7E-05 5.9E-10 68.9 23.5 190 89-286 140-349 (374)
264 KOG2053 Mitochondrial inherita 98.6 0.00016 3.4E-09 69.4 29.3 186 63-266 17-214 (932)
265 PF06552 TOM20_plant: Plant sp 98.6 5E-07 1.1E-11 70.1 10.5 97 186-286 7-124 (186)
266 KOG0714 Molecular chaperone (D 98.6 4E-08 8.7E-13 87.4 5.2 70 294-363 2-71 (306)
267 PTZ00100 DnaJ chaperone protei 98.6 8.6E-08 1.9E-12 68.9 5.4 52 294-350 64-115 (116)
268 COG3898 Uncharacterized membra 98.6 0.00011 2.3E-09 64.1 24.1 246 2-271 134-392 (531)
269 KOG2610 Uncharacterized conser 98.6 2.1E-05 4.5E-10 67.0 19.5 167 56-235 104-274 (491)
270 KOG4507 Uncharacterized conser 98.6 1.5E-05 3.1E-10 72.7 19.5 99 184-285 621-719 (886)
271 PF13424 TPR_12: Tetratricopep 98.6 8.2E-08 1.8E-12 66.1 4.2 67 87-153 2-75 (78)
272 PF06552 TOM20_plant: Plant sp 98.5 2.1E-06 4.6E-11 66.6 11.6 98 4-125 7-115 (186)
273 PHA02624 large T antigen; Prov 98.5 1.7E-07 3.6E-12 86.9 6.1 62 292-358 8-71 (647)
274 KOG2471 TPR repeat-containing 98.5 2.1E-05 4.5E-10 70.2 18.0 146 27-175 211-383 (696)
275 KOG0376 Serine-threonine phosp 98.5 4.7E-07 1E-11 80.6 7.5 112 57-172 6-117 (476)
276 KOG3617 WD40 and TPR repeat-co 98.4 8.7E-05 1.9E-09 70.5 22.0 229 2-272 742-997 (1416)
277 KOG1150 Predicted molecular ch 98.4 5.4E-07 1.2E-11 69.8 6.2 64 295-358 53-116 (250)
278 KOG0545 Aryl-hydrocarbon recep 98.4 1.5E-05 3.3E-10 64.7 14.1 105 55-159 178-299 (329)
279 PF04184 ST7: ST7 protein; In 98.4 1.8E-05 4E-10 71.1 15.2 181 95-279 173-383 (539)
280 KOG2796 Uncharacterized conser 98.4 2.7E-05 5.8E-10 64.1 14.6 147 57-217 179-332 (366)
281 KOG1586 Protein required for f 98.4 8.1E-05 1.8E-09 60.2 16.9 187 69-279 28-232 (288)
282 KOG0551 Hsp90 co-chaperone CNS 98.3 4.9E-06 1.1E-10 70.5 10.2 106 54-159 80-188 (390)
283 PF13428 TPR_14: Tetratricopep 98.3 2.1E-06 4.6E-11 51.3 5.3 42 91-132 2-43 (44)
284 KOG1585 Protein required for f 98.3 0.00014 3.1E-09 59.3 16.8 176 90-272 31-220 (308)
285 PF04184 ST7: ST7 protein; In 98.3 0.00026 5.7E-09 63.9 20.0 186 3-203 183-379 (539)
286 KOG2610 Uncharacterized conser 98.3 0.00013 2.7E-09 62.3 16.8 164 93-269 106-274 (491)
287 KOG2471 TPR repeat-containing 98.2 2.9E-05 6.3E-10 69.3 13.3 224 22-255 100-382 (696)
288 PF02259 FAT: FAT domain; Int 98.2 0.00093 2E-08 60.7 24.0 145 121-274 143-341 (352)
289 TIGR00714 hscB Fe-S protein as 98.2 2.9E-06 6.4E-11 66.1 6.3 54 307-360 3-60 (157)
290 PF13281 DUF4071: Domain of un 98.2 0.0011 2.4E-08 59.0 23.0 172 57-242 143-339 (374)
291 PF13431 TPR_17: Tetratricopep 98.2 1.4E-06 3E-11 48.5 3.3 33 10-42 1-33 (34)
292 PF13431 TPR_17: Tetratricopep 98.2 1.8E-06 3.9E-11 48.0 3.0 32 113-144 2-33 (34)
293 PF13428 TPR_14: Tetratricopep 98.2 3.8E-06 8.2E-11 50.2 4.6 41 210-250 3-43 (44)
294 KOG0530 Protein farnesyltransf 98.2 0.00097 2.1E-08 55.1 19.3 169 69-254 57-233 (318)
295 PRK01773 hscB co-chaperone Hsc 98.2 4.6E-06 1E-10 65.8 5.8 66 295-360 2-73 (173)
296 PF05843 Suf: Suppressor of fo 98.1 0.00014 3.1E-09 63.3 15.1 142 92-280 3-145 (280)
297 PF05843 Suf: Suppressor of fo 98.1 0.00015 3.3E-09 63.2 15.1 114 163-289 3-120 (280)
298 PF10300 DUF3808: Protein of u 98.1 0.00032 7E-09 65.7 18.1 160 102-273 200-378 (468)
299 PF00515 TPR_1: Tetratricopept 98.1 8.1E-06 1.7E-10 45.7 4.4 32 243-274 2-33 (34)
300 COG3118 Thioredoxin domain-con 98.1 0.00062 1.3E-08 57.5 17.1 132 2-138 148-286 (304)
301 KOG0530 Protein farnesyltransf 98.1 0.0013 2.8E-08 54.4 18.2 235 99-357 52-305 (318)
302 PF12968 DUF3856: Domain of Un 98.0 0.00039 8.5E-09 49.8 12.8 108 164-271 3-129 (144)
303 PF07719 TPR_2: Tetratricopept 98.0 1.6E-05 3.4E-10 44.4 4.8 33 243-275 2-34 (34)
304 COG3118 Thioredoxin domain-con 98.0 0.00096 2.1E-08 56.4 17.0 131 56-201 135-267 (304)
305 PF00515 TPR_1: Tetratricopept 98.0 1.3E-05 2.8E-10 44.8 4.3 34 208-241 1-34 (34)
306 COG2976 Uncharacterized protei 97.9 0.0015 3.4E-08 51.6 15.8 89 184-274 103-191 (207)
307 PF07719 TPR_2: Tetratricopept 97.9 3.1E-05 6.6E-10 43.2 4.9 32 91-122 2-33 (34)
308 PF10300 DUF3808: Protein of u 97.9 0.0059 1.3E-07 57.3 22.1 121 68-200 246-377 (468)
309 KOG0985 Vesicle coat protein c 97.9 0.024 5.1E-07 56.0 25.3 183 88-287 1102-1324(1666)
310 COG2976 Uncharacterized protei 97.8 0.0048 1E-07 48.9 17.2 120 108-241 70-192 (207)
311 KOG1585 Protein required for f 97.8 0.013 2.7E-07 48.3 20.7 204 23-266 32-251 (308)
312 PF02259 FAT: FAT domain; Int 97.8 0.013 2.9E-07 53.2 22.6 109 180-288 156-304 (352)
313 PF08424 NRDE-2: NRDE-2, neces 97.8 0.0037 8.1E-08 55.6 18.1 150 78-237 8-183 (321)
314 PF03704 BTAD: Bacterial trans 97.7 0.0016 3.4E-08 50.8 13.7 94 178-271 14-125 (146)
315 PF08631 SPO22: Meiosis protei 97.7 0.031 6.8E-07 48.8 26.2 171 90-270 84-274 (278)
316 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00039 8.5E-09 42.8 7.0 48 243-290 2-49 (53)
317 PF04910 Tcf25: Transcriptiona 97.6 0.006 1.3E-07 55.0 17.2 171 84-274 34-225 (360)
318 COG2909 MalT ATP-dependent tra 97.6 0.069 1.5E-06 52.2 24.6 205 58-273 418-649 (894)
319 PF13181 TPR_8: Tetratricopept 97.6 0.00011 2.5E-09 40.9 4.0 32 243-274 2-33 (34)
320 PF03704 BTAD: Bacterial trans 97.6 0.0032 6.9E-08 49.1 12.9 63 90-152 62-124 (146)
321 COG5269 ZUO1 Ribosome-associat 97.5 0.00017 3.6E-09 59.1 5.5 73 290-362 38-114 (379)
322 KOG0568 Molecular chaperone (D 97.5 0.00025 5.5E-09 56.6 6.1 56 294-351 46-102 (342)
323 KOG0890 Protein kinase of the 97.5 0.06 1.3E-06 58.1 24.2 262 3-272 1398-1732(2382)
324 COG0790 FOG: TPR repeat, SEL1 97.5 0.061 1.3E-06 47.4 22.9 196 62-275 48-270 (292)
325 PF04910 Tcf25: Transcriptiona 97.5 0.044 9.5E-07 49.5 20.8 171 52-246 37-231 (360)
326 PF13181 TPR_8: Tetratricopept 97.5 0.00025 5.4E-09 39.4 4.1 30 92-121 3-32 (34)
327 KOG2300 Uncharacterized conser 97.5 0.083 1.8E-06 48.1 26.9 120 184-303 289-429 (629)
328 PRK15180 Vi polysaccharide bio 97.5 0.056 1.2E-06 49.1 20.2 120 2-122 303-423 (831)
329 KOG3783 Uncharacterized conser 97.4 0.03 6.5E-07 51.6 18.4 247 6-275 251-524 (546)
330 PRK10941 hypothetical protein; 97.4 0.0024 5.1E-08 54.7 11.0 78 207-284 180-257 (269)
331 KOG1914 mRNA cleavage and poly 97.4 0.11 2.3E-06 48.0 23.3 189 72-275 310-505 (656)
332 PF08424 NRDE-2: NRDE-2, neces 97.4 0.025 5.5E-07 50.4 17.8 146 111-272 6-184 (321)
333 KOG3616 Selective LIM binding 97.3 0.035 7.6E-07 53.0 18.5 34 242-275 995-1028(1636)
334 KOG1550 Extracellular protein 97.3 0.14 3E-06 49.5 23.1 246 5-272 229-505 (552)
335 PF13174 TPR_6: Tetratricopept 97.3 0.00052 1.1E-08 37.7 4.2 31 244-274 2-32 (33)
336 KOG3364 Membrane protein invol 97.2 0.013 2.7E-07 43.5 11.5 84 207-290 31-119 (149)
337 KOG1550 Extracellular protein 97.2 0.063 1.4E-06 51.8 19.9 251 2-274 263-541 (552)
338 PF13176 TPR_7: Tetratricopept 97.2 0.00036 7.7E-09 39.4 2.8 26 245-270 2-27 (36)
339 PF04781 DUF627: Protein of un 97.2 0.0061 1.3E-07 43.7 9.5 96 176-272 2-108 (111)
340 PF13174 TPR_6: Tetratricopept 97.2 0.00078 1.7E-08 37.0 4.1 31 92-122 2-32 (33)
341 KOG2300 Uncharacterized conser 97.2 0.049 1.1E-06 49.5 17.0 174 92-277 325-520 (629)
342 KOG1258 mRNA processing protei 97.2 0.13 2.8E-06 48.2 20.2 192 89-296 296-495 (577)
343 PF04781 DUF627: Protein of un 97.2 0.0049 1.1E-07 44.1 8.8 93 61-154 2-108 (111)
344 KOG1310 WD40 repeat protein [G 97.1 0.0033 7.1E-08 57.3 9.3 102 173-278 377-481 (758)
345 PF07079 DUF1347: Protein of u 97.1 0.18 4E-06 45.6 26.9 126 25-151 9-155 (549)
346 PF08631 SPO22: Meiosis protei 97.1 0.08 1.7E-06 46.2 17.3 153 135-292 4-172 (278)
347 PRK10941 hypothetical protein; 97.1 0.0095 2.1E-07 51.1 11.2 70 91-160 182-251 (269)
348 KOG3824 Huntingtin interacting 97.1 0.003 6.5E-08 53.6 7.8 79 53-132 114-192 (472)
349 KOG4507 Uncharacterized conser 97.0 0.0035 7.6E-08 57.8 8.7 100 68-168 620-720 (886)
350 PF14561 TPR_20: Tetratricopep 97.0 0.0095 2.1E-07 41.7 9.1 65 227-291 7-73 (90)
351 PTZ00009 heat shock 70 kDa pro 97.0 0.0034 7.4E-08 61.7 9.0 16 387-402 624-639 (653)
352 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0049 1.1E-07 38.0 6.4 33 127-159 4-36 (53)
353 PF13176 TPR_7: Tetratricopept 97.0 0.0011 2.4E-08 37.3 3.2 30 210-239 1-30 (36)
354 KOG3824 Huntingtin interacting 96.9 0.0047 1E-07 52.4 7.9 73 176-252 122-194 (472)
355 COG4649 Uncharacterized protei 96.9 0.11 2.4E-06 40.6 14.2 123 29-152 65-195 (221)
356 KOG1839 Uncharacterized protei 96.9 0.017 3.8E-07 58.6 12.5 172 54-234 931-1125(1236)
357 PF09986 DUF2225: Uncharacteri 96.9 0.027 5.9E-07 46.7 11.9 93 184-276 91-199 (214)
358 KOG3616 Selective LIM binding 96.8 0.099 2.2E-06 50.1 16.4 16 29-44 622-637 (1636)
359 PF14561 TPR_20: Tetratricopep 96.8 0.027 5.8E-07 39.4 9.9 48 110-157 8-55 (90)
360 PF12968 DUF3856: Domain of Un 96.8 0.096 2.1E-06 38.0 12.5 102 97-237 16-129 (144)
361 PF09613 HrpB1_HrpK: Bacterial 96.8 0.035 7.6E-07 43.0 11.2 97 58-156 13-109 (160)
362 KOG1463 26S proteasome regulat 96.8 0.32 6.9E-06 42.4 22.6 270 3-286 19-328 (411)
363 KOG2396 HAT (Half-A-TPR) repea 96.8 0.057 1.2E-06 49.3 13.7 98 73-171 89-187 (568)
364 PF09613 HrpB1_HrpK: Bacterial 96.8 0.072 1.6E-06 41.3 12.5 86 207-292 9-94 (160)
365 KOG2396 HAT (Half-A-TPR) repea 96.7 0.028 6.2E-07 51.1 11.7 95 188-286 89-184 (568)
366 COG3914 Spy Predicted O-linked 96.6 0.16 3.5E-06 47.4 16.0 139 104-258 45-192 (620)
367 KOG2041 WD40 repeat protein [G 96.6 0.59 1.3E-05 44.8 19.7 128 13-150 684-822 (1189)
368 PF10602 RPN7: 26S proteasome 96.6 0.042 9.1E-07 44.2 11.0 26 127-152 39-64 (177)
369 KOG1258 mRNA processing protei 96.6 0.66 1.4E-05 43.7 21.7 179 64-256 306-489 (577)
370 PF09986 DUF2225: Uncharacteri 96.6 0.08 1.7E-06 43.9 12.7 113 136-250 89-208 (214)
371 smart00028 TPR Tetratricopepti 96.5 0.0042 9E-08 33.5 3.6 31 244-274 3-33 (34)
372 COG2909 MalT ATP-dependent tra 96.5 0.93 2E-05 44.8 26.5 233 21-267 414-684 (894)
373 KOG0985 Vesicle coat protein c 96.5 1 2.3E-05 45.2 24.1 218 20-264 1102-1376(1666)
374 COG3914 Spy Predicted O-linked 96.5 0.26 5.6E-06 46.2 16.3 149 65-224 40-192 (620)
375 KOG1310 WD40 repeat protein [G 96.5 0.013 2.8E-07 53.6 7.9 106 53-159 372-480 (758)
376 KOG1914 mRNA cleavage and poly 96.5 0.73 1.6E-05 42.9 25.6 175 82-271 271-464 (656)
377 smart00028 TPR Tetratricopepti 96.5 0.0056 1.2E-07 32.9 3.9 31 92-122 3-33 (34)
378 KOG1789 Endocytosis protein RM 96.5 0.0085 1.8E-07 59.2 7.0 55 295-353 1281-1339(2235)
379 PRK13184 pknD serine/threonine 96.4 0.37 8E-06 49.0 18.3 129 3-159 490-626 (932)
380 KOG0546 HSP90 co-chaperone CPR 96.4 0.0043 9.3E-08 53.8 4.3 85 207-291 274-358 (372)
381 COG4976 Predicted methyltransf 96.4 0.0062 1.3E-07 49.5 4.8 57 219-275 6-62 (287)
382 PRK15180 Vi polysaccharide bio 96.3 0.13 2.7E-06 46.9 13.1 126 64-202 298-423 (831)
383 KOG1464 COP9 signalosome, subu 96.3 0.59 1.3E-05 39.5 16.9 198 3-237 42-260 (440)
384 KOG2422 Uncharacterized conser 96.2 0.74 1.6E-05 43.1 17.4 159 103-274 251-451 (665)
385 PF10602 RPN7: 26S proteasome 96.2 0.12 2.6E-06 41.5 11.2 107 156-272 31-143 (177)
386 TIGR02561 HrpB1_HrpK type III 96.1 0.11 2.4E-06 39.6 10.0 79 62-141 17-95 (153)
387 KOG3364 Membrane protein invol 96.1 0.18 3.8E-06 37.6 10.7 72 88-159 30-106 (149)
388 COG4976 Predicted methyltransf 96.1 0.011 2.4E-07 48.1 4.8 61 99-159 4-64 (287)
389 KOG4814 Uncharacterized conser 96.0 0.45 9.7E-06 45.1 15.4 98 176-273 360-459 (872)
390 PF15015 NYD-SP12_N: Spermatog 96.0 0.068 1.5E-06 47.7 9.7 96 175-270 181-290 (569)
391 COG0790 FOG: TPR repeat, SEL1 96.0 0.96 2.1E-05 39.8 22.9 149 69-237 91-266 (292)
392 KOG0529 Protein geranylgeranyl 95.9 1.2 2.6E-05 40.1 18.8 178 59-248 32-235 (421)
393 PF07079 DUF1347: Protein of u 95.9 1.3 2.8E-05 40.4 27.6 151 129-290 384-544 (549)
394 KOG2041 WD40 repeat protein [G 95.9 1.9 4E-05 41.6 18.9 141 65-234 673-822 (1189)
395 PF11207 DUF2989: Protein of u 95.8 0.33 7.3E-06 39.2 12.1 74 68-144 119-198 (203)
396 PF10345 Cohesin_load: Cohesin 95.8 2.1 4.6E-05 42.2 30.4 58 209-266 362-428 (608)
397 KOG1839 Uncharacterized protei 95.7 0.31 6.8E-06 50.0 14.1 171 91-271 933-1128(1236)
398 KOG4814 Uncharacterized conser 95.7 0.11 2.4E-06 48.9 9.9 96 57-153 356-457 (872)
399 KOG1538 Uncharacterized conser 95.6 0.33 7.2E-06 46.0 12.9 179 26-234 636-830 (1081)
400 COG2912 Uncharacterized conser 95.6 0.11 2.4E-06 43.9 9.2 73 207-279 180-252 (269)
401 TIGR02561 HrpB1_HrpK type III 95.6 0.31 6.8E-06 37.2 10.5 84 209-292 11-94 (153)
402 KOG0921 Dosage compensation co 95.6 0.015 3.2E-07 56.7 4.3 17 351-367 1164-1180(1282)
403 COG5159 RPN6 26S proteasome re 95.5 1.4 3E-05 37.6 21.7 267 2-286 17-326 (421)
404 COG5191 Uncharacterized conser 95.5 0.056 1.2E-06 46.2 6.8 90 83-172 100-190 (435)
405 PF04053 Coatomer_WDAD: Coatom 95.5 0.58 1.3E-05 43.6 14.2 101 26-150 299-399 (443)
406 KOG4151 Myosin assembly protei 95.5 0.14 3E-06 49.5 10.1 127 163-289 46-174 (748)
407 PRK13184 pknD serine/threonine 95.5 0.37 8.1E-06 48.9 13.6 146 129-281 480-630 (932)
408 PF12862 Apc5: Anaphase-promot 95.4 0.071 1.5E-06 37.7 6.4 58 181-238 9-71 (94)
409 PF10579 Rapsyn_N: Rapsyn N-te 95.4 0.16 3.5E-06 33.9 7.3 62 174-236 10-71 (80)
410 COG4649 Uncharacterized protei 95.3 1.1 2.3E-05 35.3 17.3 125 136-270 70-195 (221)
411 KOG2422 Uncharacterized conser 95.3 1.1 2.4E-05 42.1 14.9 141 84-240 278-451 (665)
412 KOG0890 Protein kinase of the 95.2 6.3 0.00014 43.8 24.9 101 160-275 1669-1788(2382)
413 KOG0723 Molecular chaperone (D 95.1 0.073 1.6E-06 37.3 5.4 53 294-351 55-107 (112)
414 COG2912 Uncharacterized conser 95.0 0.25 5.3E-06 41.9 9.2 75 93-167 184-258 (269)
415 PF13374 TPR_10: Tetratricopep 95.0 0.058 1.2E-06 31.2 4.2 28 210-237 4-31 (42)
416 PF13374 TPR_10: Tetratricopep 95.0 0.064 1.4E-06 31.0 4.3 31 242-272 2-32 (42)
417 PRK12798 chemotaxis protein; R 94.8 3.1 6.6E-05 37.8 23.0 214 54-280 111-335 (421)
418 KOG0529 Protein geranylgeranyl 94.8 2 4.4E-05 38.7 14.6 162 106-281 45-234 (421)
419 COG5191 Uncharacterized conser 94.7 0.08 1.7E-06 45.3 5.7 88 195-286 98-186 (435)
420 PF15015 NYD-SP12_N: Spermatog 94.7 0.19 4E-06 45.0 8.0 60 92-151 230-289 (569)
421 PF10345 Cohesin_load: Cohesin 94.6 5.2 0.00011 39.4 26.5 237 25-270 304-605 (608)
422 PF10516 SHNi-TPR: SHNi-TPR; 94.5 0.068 1.5E-06 30.3 3.4 29 243-271 2-30 (38)
423 COG1747 Uncharacterized N-term 94.4 4.4 9.6E-05 37.8 24.0 161 76-254 87-251 (711)
424 PF10579 Rapsyn_N: Rapsyn N-te 94.4 0.65 1.4E-05 31.1 8.1 62 128-198 10-71 (80)
425 PF00244 14-3-3: 14-3-3 protei 94.3 2.9 6.4E-05 35.4 14.7 171 93-271 4-198 (236)
426 KOG2581 26S proteasome regulat 94.2 3.4 7.3E-05 37.2 14.5 134 134-276 136-281 (493)
427 KOG1464 COP9 signalosome, subu 94.2 3.1 6.7E-05 35.3 14.6 212 69-290 41-284 (440)
428 KOG0686 COP9 signalosome, subu 94.0 1.1 2.3E-05 40.3 11.0 169 99-276 119-309 (466)
429 KOG3807 Predicted membrane pro 93.9 4 8.8E-05 35.7 19.0 53 64-119 193-245 (556)
430 PF04053 Coatomer_WDAD: Coatom 93.8 5.2 0.00011 37.5 16.0 101 32-150 271-373 (443)
431 PF10516 SHNi-TPR: SHNi-TPR; 93.7 0.14 3E-06 29.0 3.6 28 92-119 3-30 (38)
432 PF12862 Apc5: Anaphase-promot 93.6 0.55 1.2E-05 33.2 7.5 62 133-203 7-74 (94)
433 COG3629 DnrI DNA-binding trans 93.6 0.5 1.1E-05 40.7 8.3 65 89-153 152-216 (280)
434 PF04190 DUF410: Protein of un 93.5 4.4 9.6E-05 34.9 19.5 28 122-149 88-115 (260)
435 KOG3783 Uncharacterized conser 93.4 2.5 5.3E-05 39.6 12.8 68 163-239 451-522 (546)
436 COG5107 RNA14 Pre-mRNA 3'-end 93.3 6.5 0.00014 36.1 23.1 190 73-271 285-495 (660)
437 KOG0431 Auxilin-like protein a 93.3 0.21 4.6E-06 46.4 6.1 72 275-349 371-448 (453)
438 COG4455 ImpE Protein of avirul 93.2 4.1 8.9E-05 33.5 12.6 73 98-170 9-81 (273)
439 COG4941 Predicted RNA polymera 93.1 5.7 0.00012 34.9 16.3 166 106-283 212-406 (415)
440 PF11817 Foie-gras_1: Foie gra 93.1 5.2 0.00011 34.2 15.2 62 207-268 177-244 (247)
441 COG1076 DjlA DnaJ-domain-conta 93.0 1.2 2.7E-05 35.6 9.4 55 295-349 113-173 (174)
442 PF07720 TPR_3: Tetratricopept 92.9 0.43 9.3E-06 26.7 4.7 30 244-273 3-34 (36)
443 PF11207 DUF2989: Protein of u 92.9 1.8 4E-05 35.1 10.1 44 184-227 154-197 (203)
444 PF07721 TPR_4: Tetratricopept 92.7 0.15 3.3E-06 26.0 2.6 22 244-265 3-24 (26)
445 KOG1538 Uncharacterized conser 92.7 3.8 8.3E-05 39.3 13.1 122 61-196 709-843 (1081)
446 PF09670 Cas_Cas02710: CRISPR- 92.6 4.3 9.3E-05 37.2 13.5 64 56-119 132-198 (379)
447 PTZ00009 heat shock 70 kDa pro 92.6 0.092 2E-06 51.8 2.9 14 383-396 624-637 (653)
448 COG4907 Predicted membrane pro 92.6 0.55 1.2E-05 42.4 7.3 41 249-289 482-522 (595)
449 KOG2581 26S proteasome regulat 92.4 8.3 0.00018 34.9 21.2 246 61-318 132-405 (493)
450 KOG0546 HSP90 co-chaperone CPR 92.3 0.3 6.5E-06 42.8 5.3 74 90-163 275-348 (372)
451 COG3629 DnrI DNA-binding trans 92.3 0.94 2E-05 39.0 8.1 65 207-271 152-216 (280)
452 PF07720 TPR_3: Tetratricopept 92.2 0.67 1.5E-05 25.9 4.9 20 93-112 4-23 (36)
453 KOG3807 Predicted membrane pro 92.1 7.9 0.00017 34.0 19.3 131 4-147 200-334 (556)
454 KOG4279 Serine/threonine prote 92.0 2.3 5.1E-05 41.3 11.0 187 89-284 200-408 (1226)
455 PF10255 Paf67: RNA polymerase 91.8 1.1 2.5E-05 40.8 8.6 61 92-152 124-192 (404)
456 PF07721 TPR_4: Tetratricopept 91.7 0.32 7E-06 24.7 3.0 21 127-147 4-24 (26)
457 COG5159 RPN6 26S proteasome re 91.4 8.5 0.00018 33.1 17.3 201 26-237 7-235 (421)
458 COG3947 Response regulator con 91.4 1.2 2.6E-05 38.1 7.6 60 210-269 281-340 (361)
459 TIGR03504 FimV_Cterm FimV C-te 91.2 1.1 2.3E-05 26.4 5.2 25 246-270 3-27 (44)
460 cd02682 MIT_AAA_Arch MIT: doma 90.9 2.3 5.1E-05 28.3 7.2 25 55-79 6-30 (75)
461 PF10373 EST1_DNA_bind: Est1 D 90.7 1.2 2.5E-05 38.9 7.6 62 109-173 1-62 (278)
462 COG0484 DnaJ DnaJ-class molecu 90.6 0.08 1.7E-06 47.1 0.2 11 340-350 19-29 (371)
463 PRK11619 lytic murein transgly 90.4 20 0.00043 35.6 23.1 237 9-268 116-372 (644)
464 KOG3192 Mitochondrial J-type c 90.3 0.73 1.6E-05 35.1 4.9 68 293-360 6-79 (168)
465 PF10373 EST1_DNA_bind: Est1 D 89.8 1.5 3.2E-05 38.2 7.5 62 189-254 1-62 (278)
466 PF09670 Cas_Cas02710: CRISPR- 89.3 15 0.00032 33.8 13.6 62 92-153 133-198 (379)
467 COG4455 ImpE Protein of avirul 89.2 11 0.00024 31.2 10.9 61 217-277 10-70 (273)
468 KOG0686 COP9 signalosome, subu 88.9 8.9 0.00019 34.7 11.2 99 161-269 150-256 (466)
469 COG5107 RNA14 Pre-mRNA 3'-end 88.8 20 0.00042 33.2 20.0 243 10-277 290-537 (660)
470 PF04190 DUF410: Protein of un 88.7 15 0.00032 31.7 18.4 34 238-271 136-170 (260)
471 COG3947 Response regulator con 88.4 2.2 4.8E-05 36.6 7.0 59 92-150 281-339 (361)
472 COG1747 Uncharacterized N-term 88.1 24 0.00051 33.3 23.1 215 86-318 62-284 (711)
473 COG4907 Predicted membrane pro 88.0 0.43 9.3E-06 43.1 2.7 12 342-353 528-539 (595)
474 smart00386 HAT HAT (Half-A-TPR 87.8 1.7 3.8E-05 22.9 4.3 30 2-31 1-30 (33)
475 PF00244 14-3-3: 14-3-3 protei 86.6 19 0.00041 30.6 15.2 176 59-236 5-197 (236)
476 PF14863 Alkyl_sulf_dimr: Alky 86.5 3.5 7.6E-05 31.6 6.6 48 91-138 71-118 (141)
477 TIGR03504 FimV_Cterm FimV C-te 86.5 2.9 6.2E-05 24.6 4.8 23 129-151 4-26 (44)
478 KOG2063 Vacuolar assembly/sort 86.2 22 0.00048 36.2 13.4 174 92-270 506-712 (877)
479 PF10255 Paf67: RNA polymerase 86.0 5.9 0.00013 36.3 8.8 64 172-236 124-192 (404)
480 KOG4151 Myosin assembly protei 85.6 5.7 0.00012 39.0 8.9 114 57-171 55-174 (748)
481 KOG2561 Adaptor protein NUB1, 85.6 9.1 0.0002 35.0 9.5 98 55-152 163-295 (568)
482 smart00386 HAT HAT (Half-A-TPR 85.6 2.9 6.2E-05 22.0 4.4 26 105-130 2-27 (33)
483 TIGR03362 VI_chp_7 type VI sec 85.5 25 0.00055 31.0 17.9 47 102-149 111-157 (301)
484 PF11817 Foie-gras_1: Foie gra 85.0 7.6 0.00016 33.2 8.8 62 90-151 178-245 (247)
485 PF12854 PPR_1: PPR repeat 84.9 2.9 6.3E-05 22.9 4.1 27 89-115 6-32 (34)
486 KOG2114 Vacuolar assembly/sort 84.9 24 0.00052 35.3 12.5 150 98-268 342-516 (933)
487 KOG1924 RhoA GTPase effector D 84.4 1.3 2.9E-05 43.0 4.1 39 364-402 564-602 (1102)
488 KOG0712 Molecular chaperone (D 84.3 0.67 1.5E-05 40.8 2.1 16 339-354 18-36 (337)
489 PHA02537 M terminase endonucle 84.2 24 0.00052 29.6 12.0 107 183-290 96-225 (230)
490 PF12739 TRAPPC-Trs85: ER-Golg 83.2 40 0.00087 31.5 14.8 166 92-273 210-401 (414)
491 KOG4521 Nuclear pore complex, 83.1 65 0.0014 33.8 16.2 72 184-259 997-1071(1480)
492 PF14863 Alkyl_sulf_dimr: Alky 83.0 5.1 0.00011 30.7 6.1 52 54-106 69-120 (141)
493 COG3014 Uncharacterized protei 82.9 34 0.00073 30.4 12.0 42 240-281 211-252 (449)
494 PF09797 NatB_MDM20: N-acetylt 81.8 28 0.0006 31.9 11.6 44 4-47 199-242 (365)
495 KOG1463 26S proteasome regulat 81.6 38 0.00083 30.1 18.2 168 59-239 132-318 (411)
496 PF12854 PPR_1: PPR repeat 81.5 3.8 8.2E-05 22.4 3.7 24 208-231 7-30 (34)
497 cd02683 MIT_1 MIT: domain cont 81.4 14 0.0003 24.9 7.8 23 57-79 8-30 (77)
498 COG5536 BET4 Protein prenyltra 81.1 35 0.00076 29.4 13.3 210 71-284 90-324 (328)
499 smart00299 CLH Clathrin heavy 81.0 22 0.00048 27.0 12.4 119 2-139 21-140 (140)
500 KOG0276 Vesicle coat complex C 80.5 34 0.00073 33.0 11.3 124 23-195 615-746 (794)
No 1
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=100.00 E-value=1.7e-62 Score=403.84 Aligned_cols=401 Identities=29% Similarity=0.407 Sum_probs=358.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----------------HHHHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----------------QAQSTFDSALK 64 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----------------~~~~~~~~a~~ 64 (409)
+|+-.-|+..++++|++.|++..+...+|.+++++|.+++|...+...+...+ ...........
T Consensus 85 mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 85 MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 46667788888888888888888888888888888999999888877766321 12233445666
Q ss_pred HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
++..|++..|+..++. +++..|.++..+..++.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++
T Consensus 165 ~~~~GD~~~ai~~i~~-llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITH-LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHH-HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 7788999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
..++.||+++|++..|...|..+..+...+..++..+..++|.++++..+++++.+|..+.........++.|+...+++
T Consensus 244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999986655667778899999999999
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhccc
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVS 304 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 304 (409)
.+|+..|.++|..+|++..+++.+|.+|+-...|+.|+..|++|.+.++++..+++.+.+++...+++.+.|||++|||.
T Consensus 324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVk 403 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVK 403 (504)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhccCCCCCCC--chHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcccccCCCCCCCCCCCCCC
Q 043837 305 KTASISEIKRAYKKLALQWHPDKNVD--NREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFGGGGQQ 382 (409)
Q Consensus 305 ~~~~~~e~~~~y~~~a~~~~~d~~~~--~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 382 (409)
++++..||.++||++|.+||||..++ +++.|+++|-+|..|-|+|+||++|.+||+|+||-+|..+.||++ |++++
T Consensus 404 RnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~Es~q~GGG--g~~Hg 481 (504)
T KOG0624|consen 404 RNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDPESQQGGGG--GPFHG 481 (504)
T ss_pred ccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCChhhccCCCC--CCCCC
Confidence 99999999999999999999998554 579999999999999999999999999999999999875433211 11122
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCC
Q 043837 383 FTFHFEGGFPGGFGGDGGFPGGFGFNF 409 (409)
Q Consensus 383 ~~~~~~gg~~gg~~~~gg~~g~~~~~f 409 (409)
| .. +.|+.||+||+||+|+|||
T Consensus 482 f----~n-~hgF~~F~~Gg~~~~~F~F 503 (504)
T KOG0624|consen 482 F----WN-EHGFNPFGGGGPFQFKFHF 503 (504)
T ss_pred C----cc-ccCCCCCCCCCCCCccccc
Confidence 2 11 4566677788889999998
No 2
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-56 Score=375.81 Aligned_cols=402 Identities=42% Similarity=0.603 Sum_probs=348.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHhC
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-------------QLLQAQSTFDSALKLYDS 68 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------------~~~~~~~~~~~a~~~~~~ 68 (409)
.+|.+|+..|..||+..|+++..|..++.++..++++++|...++..+. ...........|...++.
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 4689999999999999999999999999999999999999777765543 222333444445555544
Q ss_pred CC---chHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837 69 GE---YTKPLEYIDKVVLVFS--PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 69 ~~---~~~A~~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 143 (409)
.+ -..|+..+++++.... |....+....+.|+...+++++|+..--.++++++.+.++++..|.+++...+.+.|
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA 222 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence 33 2233444444232222 555678888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~ 223 (409)
+.+|+++|.++|++.....+......+......++.+++.|+|.+|.++|..+|.++|++...++.+|.++|.+...+|+
T Consensus 223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence 99999999999999998888999999999999999999999999999999999999999988899999999999999999
Q ss_pred hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcc
Q 043837 224 GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGV 303 (409)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 303 (409)
..+|+..|+.+++++|....++..+|.|+..+++|++|+++|+++++...+ .+++..+..+...++++++++||++||+
T Consensus 303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi 381 (486)
T KOG0550|consen 303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGI 381 (486)
T ss_pred chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhh
Confidence 999999999999999999999999999999999999999999999999877 8999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcccccCCCCCCCCC----CC
Q 043837 304 SKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGMGGGGFNFG----GG 379 (409)
Q Consensus 304 ~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~~~~~~~~g~~~~----~~ 379 (409)
...++..+|+++|+++++.||||++...++++|.+|+++.+||.+|+||.+|.+||+|.|.++.+++++|+.+. .+
T Consensus 382 ~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 382 SRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGSGGAGFDPFNIFRAF 461 (486)
T ss_pred hhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcCCCcCcChhhhhhhc
Confidence 99999999999999999999999999889999999999999999999999999999999999988877777632 22
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 043837 380 GQQFTFHFEGGFPGGFGGDGGFPGGFGFNF 409 (409)
Q Consensus 380 ~~~~~~~~~gg~~gg~~~~gg~~g~~~~~f 409 (409)
+.+..|+ |||||++.++++| |.|.|
T Consensus 462 qa~~~f~----f~gg~~~n~~g~g-~~f~f 486 (486)
T KOG0550|consen 462 QALVQFG----FPGGFSENSSGFG-FIFQF 486 (486)
T ss_pred ccceEEe----ccCCCCCCCCCcc-cccCC
Confidence 2233343 4444444333333 55655
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-36 Score=267.25 Aligned_cols=272 Identities=19% Similarity=0.210 Sum_probs=260.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|+...||..|+++++++|+++++|+++|.+|-..+.+++|+..|.+++.. +..+...-+.|..|+++|..+-||..|++
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999884 45566777888999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
+++.+|+.+.++.++|..+...|+..+|..+|.+++.+.|+.+++.++||.+|..++.+++|...|.++++..|....
T Consensus 312 -al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa- 389 (966)
T KOG4626|consen 312 -ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA- 389 (966)
T ss_pred -HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
++.+++.++... |++++|+.+|++++++.|. .+.++.++|.+|..+|+...|+.+|.+||.++|.
T Consensus 390 --a~nNLa~i~kqq---------gnl~~Ai~~YkealrI~P~----fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 390 --AHNNLASIYKQQ---------GNLDDAIMCYKEALRIKPT----FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred --hhhhHHHHHHhc---------ccHHHHHHHHHHHHhcCch----HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 999999999998 9999999999999999999 8889999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
.++++.++|.+|...|+..+|+..|+.++++.|+.+++.-.+..+...+.
T Consensus 455 ~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 455 FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888887776554
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=263.10 Aligned_cols=309 Identities=20% Similarity=0.192 Sum_probs=249.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|+.+.|.++|..+|+++|+...++..+|.++-..|+..+|...|.+++... .-+..+-+.+..+..+|+...||..|++
T Consensus 164 ~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 164 GDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred CCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHH
Confidence 567788888888888888888888888888888888888888888887743 3456666777788888888888888888
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
+++++|+..++|+++|.+|...+.++.|+.+|.+++.+.|+++.++-++|.+|+.+|..+-|+.+|+++++++|+.++
T Consensus 244 -AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~- 321 (966)
T KOG4626|consen 244 -AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD- 321 (966)
T ss_pred -hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH-
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
++.+++..+..+ |+..+|+.+|.+++.++|+ .+.+.++||.++.+++.+++|...|.++++..|.
T Consensus 322 --Ay~NlanALkd~---------G~V~ea~~cYnkaL~l~p~----hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 322 --AYNNLANALKDK---------GSVTEAVDCYNKALRLCPN----HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred --HHhHHHHHHHhc---------cchHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh
Confidence 888888888888 8888888888888888888 5668888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchh---------------hhhhhhcc-c
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRK---------------DWYKILGV-S 304 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---------------~~~~~l~~-~ 304 (409)
.+.++.++|.+|..+|++++|+.+|++++++.|...++...++..++.+...... +.+..|+. .
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 8888888888888888888888888888888888877777766666655543321 22222222 1
Q ss_pred -ccCCHHHHHHHHHHHHhccCCCCC
Q 043837 305 -KTASISEIKRAYKKLALQWHPDKN 328 (409)
Q Consensus 305 -~~~~~~e~~~~y~~~a~~~~~d~~ 328 (409)
......+...+|+. +++..||..
T Consensus 467 kDsGni~~AI~sY~~-aLklkPDfp 490 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRT-ALKLKPDFP 490 (966)
T ss_pred hccCCcHHHHHHHHH-HHccCCCCc
Confidence 22346888899987 788888863
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=3.5e-28 Score=235.45 Aligned_cols=259 Identities=19% Similarity=0.223 Sum_probs=221.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--------------H--HHH--------
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--------------L--QAQ-------- 56 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------------~--~~~-------- 56 (409)
+|++++|+..++++++++|++..+++.+|.+|..+|++++|+..+...+... . ...
T Consensus 173 l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~ 252 (615)
T TIGR00990 173 LGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILE 252 (615)
T ss_pred hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999876554332100 0 000
Q ss_pred -------------HH---------------------------HHHHHHH---HhCCCchHHHHHHHHHHHhh---CCCcH
Q 043837 57 -------------ST---------------------------FDSALKL---YDSGEYTKPLEYIDKVVLVF---SPACS 90 (409)
Q Consensus 57 -------------~~---------------------------~~~a~~~---~~~~~~~~A~~~~~~~~~~~---~p~~~ 90 (409)
.. ...+... ...++|++|+..|++ ++.. .|...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~-al~~~~~~~~~a 331 (615)
T TIGR00990 253 TKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK-ALDLGKLGEKEA 331 (615)
T ss_pred cCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH-HHhcCCCChhhH
Confidence 00 0000000 112578899999988 6654 57788
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 170 (409)
.++..+|.++..+|++++|+..|+++++++|++..+|+.+|.++..+|++++|+..|++++..+|++.. ++..++.+
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---IYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837 171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE 250 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 250 (409)
+... |++++|+.+|+++++++|+ +..++.++|.++..+|++++|+..|++++...|+++.++..+|.
T Consensus 409 ~~~~---------g~~~~A~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 409 HFIK---------GEFAQAGKDYQKSIDLDPD----FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred HHHc---------CCHHHHHHHHHHHHHcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9888 9999999999999999999 67789999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837 251 AKLLTEDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 251 ~~~~~~~~~~A~~~~~~al~~~p~~~ 276 (409)
++..+|++++|+..|++++++.|++.
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999998753
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=5.1e-28 Score=233.66 Aligned_cols=336 Identities=14% Similarity=0.088 Sum_probs=201.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|++++|+..+..++...|+++.++..++.+....|++++|+..+.+.+.. +.....+...+..+...|++++|+..|++
T Consensus 56 g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666777777777777777777777776666677777776666666663 23344556666666666777777777766
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
++..+|.++.++..++.++...|++++|+..+.+++...|+++.++..++ .+...|++++|+..+++++..+|.....
T Consensus 136 -Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 136 -AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 66666666666666777777777777777766666666666666555443 3556666666666666666665432221
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhH----HHHHHHHHHh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKD----ALSSCTEALN 236 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~ 236 (409)
....++.++... |++++|+..+.+++...|+ ...++.++|.++...|++++ |+..|+++++
T Consensus 214 --~~~~l~~~l~~~---------g~~~eA~~~~~~al~~~p~----~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 214 --SAGLAVDTLCAV---------GKYQEAIQTGESALARGLD----GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred --HHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 223333444433 6666666666666666665 44566666666666666654 5666666666
Q ss_pred cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchh--hhhhhhc------------
Q 043837 237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRK--DWYKILG------------ 302 (409)
Q Consensus 237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~------------ 302 (409)
++|+++.++..+|.++...|++++|+..++++++++|+++.+...+..+....+..... .+-.++.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 66666666666666666666666666666666666666665555555444333322210 0111111
Q ss_pred ---ccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837 303 ---VSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARY 358 (409)
Q Consensus 303 ---~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~ 358 (409)
+......++....|++ +...+|+..+... ......+.++++.++.++++..+
T Consensus 359 a~al~~~G~~deA~~~l~~-al~~~P~~~~~~~---~ea~~~~~~~~~~~~~~~~~~~W 413 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEH-YIQARASHLPQSF---EEGLLALDGQISAVNLPPERLDW 413 (656)
T ss_pred HHHHHHCCCHHHHHHHHHH-HHHhChhhchhhH---HHHHHHHHHHHHhcCCccchhhH
Confidence 1222346777777777 5556677654433 34556777888888888776333
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=7.2e-28 Score=233.23 Aligned_cols=266 Identities=19% Similarity=0.161 Sum_probs=238.7
Q ss_pred CChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHH
Q 043837 2 KHYSEALDDLNTAIEA---DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEY 77 (409)
Q Consensus 2 g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~ 77 (409)
++|++|+..|+++++. .|....++..+|.++..+|++++|+..+.+++... .....++..+..+...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999986 47888999999999999999999999999998854 3466778899999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837 78 IDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157 (409)
Q Consensus 78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 157 (409)
|++ ++..+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|++++...|++
T Consensus 388 ~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 388 FDK-ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc--hHHHHHHHHHHH-HHcCChhHHHHHHHHH
Q 043837 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--NVHLYLGLCKVL-VKLGRGKDALSSCTEA 234 (409)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~la~~~-~~~~~~~~A~~~~~~a 234 (409)
+. ++..++.++... |++++|+..|++++.+.|.+... +...+.+.+.++ ...+++++|+..|+++
T Consensus 467 ~~---~~~~lg~~~~~~---------g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 467 PD---VYNYYGELLLDQ---------NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred hH---HHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 98 888999998887 99999999999999999874321 122233444444 4479999999999999
Q ss_pred HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837 235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRE 280 (409)
Q Consensus 235 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 280 (409)
+.++|++..++..+|.++..+|++++|+.+|++++++.+...+...
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~ 580 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ 580 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999887665433
No 8
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.97 E-value=1.9e-27 Score=197.12 Aligned_cols=289 Identities=19% Similarity=0.240 Sum_probs=240.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|++..|+..|-.+++.||++..+++.+|.+|+.+|+-..|+..+.+.+.. +.-.....+++..++++|++++|..-|+.
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999884 44456778899999999999999999999
Q ss_pred HHHhhCCCc---HHHH------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837 81 VVLVFSPAC---SKAK------------LLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 81 ~~~~~~p~~---~~~~------------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 145 (409)
++..+|.+ .+++ ......+...|++..|++....+|++.|-++..+..++.||...|+...||.
T Consensus 132 -vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 132 -VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred -HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHH
Confidence 88888843 2222 2234455667899999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH---------HHHH
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL---------GLCK 216 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~---------~la~ 216 (409)
.++.+-++..++.+ .++.++.++... |+.+.++...+++++++|++.. ....|- .-+.
T Consensus 211 Dlk~askLs~DnTe---~~ykis~L~Y~v---------gd~~~sL~~iRECLKldpdHK~-Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 211 DLKQASKLSQDNTE---GHYKISQLLYTV---------GDAENSLKEIRECLKLDPDHKL-CFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HHHHHHhccccchH---HHHHHHHHHHhh---------hhHHHHHHHHHHHHccCcchhh-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999988 9999999999999999999764 111121 1234
Q ss_pred HHHHcCChhHHHHHHHHHHhcChhcHHH----HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837 217 VLVKLGRGKDALSSCTEALNINEELIEA----LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS 292 (409)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 292 (409)
.....++|.++++..+++++.+|..+.+ ...+..|+..-+++.+|+....+++.++|++.++.-..+.++..-...
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 4567889999999999999999985543 345778899999999999999999999999988776666666544443
Q ss_pred ch--hhhhhhhccc
Q 043837 293 KR--KDWYKILGVS 304 (409)
Q Consensus 293 ~~--~~~~~~l~~~ 304 (409)
.. .+|-+.+.+.
T Consensus 358 D~AI~dye~A~e~n 371 (504)
T KOG0624|consen 358 DDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 32 3444444443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.3e-27 Score=242.81 Aligned_cols=275 Identities=19% Similarity=0.115 Sum_probs=209.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH---------------HHHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA---------------QSTFDSALKL 65 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~a~~~ 65 (409)
.|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.+++...+.. ......+..+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999988743211 1123456778
Q ss_pred HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-------------
Q 043837 66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR------------- 132 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~------------- 132 (409)
+..|++++|+..|++ ++..+|.++.++..+|.++...|++++|+..|+++++++|++..++..++.
T Consensus 362 ~~~g~~~eA~~~~~~-Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 362 LKANNLAQAERLYQQ-ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 899999999999999 889999999999999999999999999999999999999998876655444
Q ss_pred -----------------------------HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhc
Q 043837 133 -----------------------------AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK 183 (409)
Q Consensus 133 -----------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (409)
++...|++++|+..|+++++++|++.. ++..++.++...
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~---~~~~LA~~~~~~--------- 508 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW---LTYRLAQDLRQA--------- 508 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc---------
Confidence 344678999999999999999999988 788888888777
Q ss_pred CCHHHHHHHHHHHHccCCCCccc---------------------------------------------------------
Q 043837 184 GKLRVAVEDFKAALALDPNHTAH--------------------------------------------------------- 206 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~--------------------------------------------------------- 206 (409)
|++++|+..++++++..|+++..
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 88888888888888877764310
Q ss_pred -------------hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 207 -------------NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 207 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
+..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++++++..|
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 1123344555555555666666666666666666666666666666666666666666665555555
Q ss_pred CcHHHHHHHHHHHHH
Q 043837 274 QDMNIREALMRAEKA 288 (409)
Q Consensus 274 ~~~~~~~~l~~~~~~ 288 (409)
++..+...+..+...
T Consensus 669 ~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 669 DSLNTQRRVALAWAA 683 (1157)
T ss_pred CChHHHHHHHHHHHh
Confidence 555555555444443
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.3e-26 Score=223.85 Aligned_cols=257 Identities=16% Similarity=0.106 Sum_probs=172.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHH----------------
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALK---------------- 64 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~---------------- 64 (409)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++.. +.....+...+..
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666555552 2222233333333
Q ss_pred -----------------HHhCCCchHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 043837 65 -----------------LYDSGEYTKPLEYIDKVVLVFSP-ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEA 126 (409)
Q Consensus 65 -----------------~~~~~~~~~A~~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 126 (409)
++..|++++|+..+++ ++..+| ........++.++...|++++|+..+++++..+|+++.+
T Consensus 170 ~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~-~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 170 QAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA-LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 4445555555555554 344433 222333445666667777777777777777777777777
Q ss_pred HHHHHHHHHhcCChHH----HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 127 LLHRGRAYYYLADHDV----AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 127 ~~~l~~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
+..+|.++...|++++ |+..|++++.++|++.. ++..++.++... |++++|+..+++++.++|+
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~---------g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---IVTLYADALIRT---------GQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC
Confidence 7777777777777764 67777777777777776 677777776666 7777777777777777777
Q ss_pred CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 203 HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 203 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
+..++.++|.++...|++++|+..|++++..+|+++..+..+|.++...|++++|+..|+++++..|++
T Consensus 317 ----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 317 ----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 556777777777777777777777777777777777666667777777777777777777777777764
No 11
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=8e-28 Score=215.90 Aligned_cols=273 Identities=17% Similarity=0.174 Sum_probs=241.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH---HHHHHHHHHHhCCCchHHHHHHH
Q 043837 3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ---STFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
+..+|+..|.+.-...++..-++..+|++|+.+++|++|...+...-...+-.. ..|.-.+=++ +-+-++.++-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHHHH
Confidence 457899999997778888888999999999999999999988887655322111 1111111111 2234555555
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+-++..+|+.+..|..+|.||.-+++++.|+++|+++++++|.+..+|..+|.-+..+.+++.|..+|++||..+|.+..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 55788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
+|+-+|.+|... ++++.|.-+|++|++++|. +..+...+|.++.++|+.++|+..+++|+.++|
T Consensus 491 ---AwYGlG~vy~Kq---------ek~e~Ae~~fqkA~~INP~----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 491 ---AWYGLGTVYLKQ---------EKLEFAEFHFQKAVEINPS----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred ---HHHhhhhheecc---------chhhHHHHHHHhhhcCCcc----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 999999999888 9999999999999999999 777999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR 294 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 294 (409)
.++-..+.+|.+++.++++++|+..+++..++.|++..+...+++++..+++...
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 9999999999999999999999999999999999999999999999998876443
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=4.3e-25 Score=203.39 Aligned_cols=266 Identities=18% Similarity=0.152 Sum_probs=236.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHhCCCchHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-----LQAQSTFDSALKLYDSGEYTKPLE 76 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~A~~ 76 (409)
|++++|+..|.++++.+|+++.++..+|.++...|++++|+..+...+... .........+..+...|++++|+.
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 789999999999999999999999999999999999999999998877632 123456778999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE-----ALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
.|.+ ++..+|.+..++..++.++...|++++|++.++++++..|.+.. .+..+|.++...+++++|+..+++++
T Consensus 129 ~~~~-~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQ-LVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHH-HHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999 78888999999999999999999999999999999998887532 56689999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
+.+|++.. .+..++.++... |++++|+..+++++..+|.+ ...++..++.+|...|++++|+..+
T Consensus 208 ~~~p~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 208 AADPQCVR---ASILLGDLALAQ---------GDYAAAIEALERVEEQDPEY---LSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred hHCcCCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHChhh---HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999877 788888888777 99999999999999998873 3567889999999999999999999
Q ss_pred HHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 232 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
+++++..|+... +..++.++...|++++|+..++++++..|++..+...+..
T Consensus 273 ~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 273 RRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 999999997754 4889999999999999999999999999998766544443
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.4e-24 Score=219.59 Aligned_cols=270 Identities=23% Similarity=0.261 Sum_probs=202.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH----------------------------
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL---------------------------- 52 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------------------------- 52 (409)
.|++++|+..++++++.+|+++.+++.+|.++...|++++|...+.+.+...
T Consensus 35 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~ 114 (899)
T TIGR02917 35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELP 114 (899)
T ss_pred cCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhc
Confidence 3789999999999999999999999999999999999999988887766421
Q ss_pred --------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 043837 53 --------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL 124 (409)
Q Consensus 53 --------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 124 (409)
......+..+..+...|++++|+..|++ ++..+|.++.++..+|.++...|++++|+..++++++.+|.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (899)
T TIGR02917 115 GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ-ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV 193 (899)
T ss_pred ccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 1123334556666667777777777777 6677777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT 204 (409)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 204 (409)
.++..+|.++...|++++|+..|++++..+|++.. .+..++.++... |++++|...++++++..|+
T Consensus 194 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~~~~~~~~~---------g~~~~A~~~~~~~~~~~~~-- 259 (899)
T TIGR02917 194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNPA---VLLALATILIEA---------GEFEEAEKHADALLKKAPN-- 259 (899)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC--
Confidence 77777777777777777777777777777777766 666666666555 7777777777777777776
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 205 AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 205 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
....++..+.++...|++++|+..++++++.+|++..++..+|.++..+|++++|+..++++++..|++..+...+..
T Consensus 260 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 337 (899)
T TIGR02917 260 --SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337 (899)
T ss_pred --CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 444666677777777777777777777777777777777777777777777777777777777777777666555554
Q ss_pred HHH
Q 043837 285 AEK 287 (409)
Q Consensus 285 ~~~ 287 (409)
+..
T Consensus 338 ~~~ 340 (899)
T TIGR02917 338 IQL 340 (899)
T ss_pred HHH
Confidence 443
No 14
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-25 Score=193.53 Aligned_cols=209 Identities=21% Similarity=0.255 Sum_probs=140.1
Q ss_pred HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837 66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 145 (409)
+-.|++-.|-..++. ++.++|.....|+.+|.+|....+.++-...|.++.+++|+++++|+.+|.+++-++++++|+.
T Consensus 337 fL~g~~~~a~~d~~~-~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDA-AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHH-HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 344666666666666 6666666666677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~ 225 (409)
.|++++.++|++.- .+..++.+.... ++++++...|+.+++..|+ .++++...|.++..+++++
T Consensus 416 DF~Kai~L~pe~~~---~~iQl~~a~Yr~---------~k~~~~m~~Fee~kkkFP~----~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 416 DFQKAISLDPENAY---AYIQLCCALYRQ---------HKIAESMKTFEEAKKKFPN----CPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHhhcChhhhH---HHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHhhHHhHH
Confidence 77777777777666 666666666555 6677777777777777776 5556777777777777777
Q ss_pred HHHHHHHHHHhcChh------cHHHHHHHHHHHH-hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 226 DALSSCTEALNINEE------LIEALVQRGEAKL-LTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 226 ~A~~~~~~al~~~p~------~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
+|++.|++++++.|. ++..+...|.+.. -.+++..|+..+++|++++|....+...++.++....+
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 777777777777666 4555555444332 23666777777777777777766666666666555444
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=5.6e-25 Score=224.26 Aligned_cols=275 Identities=21% Similarity=0.176 Sum_probs=236.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++++|+..+++++...|.++.++..++.++...|++++|+..+.+.+... ......+..+..+...|++++|+..|.
T Consensus 580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998887743 345567778888889999999999998
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+ ++..+|++..++..++.++...|++++|+..++.+.+..|.++..+..+|.++...|++++|+..|++++...|++.
T Consensus 660 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 737 (899)
T TIGR02917 660 R-ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ- 737 (899)
T ss_pred H-HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch-
Confidence 8 88889999999999999999999999999999999999999999999999999999999999999999999888873
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
.+..++.++... |++++|+..++++++..|+ +..++..+|.++...|++++|+..|+++++.+|
T Consensus 738 ---~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 738 ---NAIKLHRALLAS---------GNTAEAVKTLEAWLKTHPN----DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred ---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 567777777777 8888888888888888888 667888888888888888888888888888888
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR 294 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 294 (409)
+++.++..++.++...|+ .+|+..+++++++.|+++.+...++.+....++...
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 888888888888888888 778888888888888888887777777665554443
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=5.3e-25 Score=226.56 Aligned_cols=259 Identities=17% Similarity=0.109 Sum_probs=216.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-HH-----------------------
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-AQ----------------------- 56 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~----------------------- 56 (409)
.|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...+. ..
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 378999999999999999999999999999999999999999888887752111 00
Q ss_pred -------------------HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 043837 57 -------------------STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLL 117 (409)
Q Consensus 57 -------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 117 (409)
....++..+...|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..+++++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~-Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ-RLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112244556677889999999988 888889998899999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc----------------------------------------cCCCc
Q 043837 118 KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR----------------------------------------LDPEH 157 (409)
Q Consensus 118 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------------------------------------~~p~~ 157 (409)
+.+|+++.+++.++..+...+++++|+..++++.. ..|.+
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~ 602 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS 602 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 88898888888888888888888888877766432 12333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
.. .+..++.+ +...|++++|+..|+++++.+|+ +..++..++.++...|++++|+..++++++.
T Consensus 603 ~~---~~~~La~~---------~~~~g~~~~A~~~y~~al~~~P~----~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 603 TR---IDLTLADW---------AQQRGDYAAARAAYQRVLTREPG----NADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred ch---HHHHHHHH---------HHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 32 33334444 44559999999999999999999 7789999999999999999999999999999
Q ss_pred ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837 238 NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 238 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 276 (409)
.|+++.++..+|.++..+|++++|++.|++++...|+++
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 999999999999999999999999999999999887654
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.4e-24 Score=214.63 Aligned_cols=264 Identities=14% Similarity=0.075 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837 6 EALDDLNTAIEADPT--LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL 83 (409)
Q Consensus 6 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 83 (409)
.+...+.+++..+|. ++.+|+.+|.|+.. +++.+|+..+.+.+...+.....+..+..+...|++++|+..+.+ +.
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk-a~ 536 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQK-IS 536 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHH-Hh
Confidence 355666667777788 99999999999998 899999998888888766655666677788899999999999998 66
Q ss_pred hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837 84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163 (409)
Q Consensus 84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (409)
...|. ...++.+|.++...|++++|+.+|+++++.+|.+...+..++......|++++|+..+++++.++|+ .. .
T Consensus 537 ~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~---a 611 (987)
T PRK09782 537 LHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN---A 611 (987)
T ss_pred ccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH---H
Confidence 55554 4567899999999999999999999999999999888888888888889999999999999999996 66 8
Q ss_pred HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243 (409)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 243 (409)
+..++.++... |++++|+..|++++.++|+ +..++.++|.++...|++++|+..|+++++++|+++.
T Consensus 612 ~~~LA~~l~~l---------G~~deA~~~l~~AL~l~Pd----~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 612 YVARATIYRQR---------HNVPAAVSDLRAALELEPN----NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 89999998888 9999999999999999999 7789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
++.++|.++..+|++++|+..|+++++++|++..+...+..+....
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 9999999999999999999999999999999988887766655433
No 18
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-24 Score=186.45 Aligned_cols=301 Identities=17% Similarity=0.155 Sum_probs=225.8
Q ss_pred hHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHH-HHHHHHhCCCchHHHHHHHHH
Q 043837 4 YSEALDDLNTAIEA-DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD-SALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 4 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~ 81 (409)
.++++..+...+.. -|.+.-.-...|.+...+.++++|+..++......+--..... ....++-. +-...+.++...
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~-~~~skLs~LA~~ 321 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK-NDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH-hhhHHHHHHHHH
Confidence 45566666666665 5666666666677777777777777777666554222111111 11111111 122333333333
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
+..++.--++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+..
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR-- 399 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR-- 399 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH--
Confidence 555566666667778888888999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
+|+.+|+.|..+ +-..=|+-+|++|+.+-|+ +..+|..+|.||.++++.++|+++|.+++.....+
T Consensus 400 -AWYGLGQaYeim---------~Mh~YaLyYfqkA~~~kPn----DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 400 -AWYGLGQAYEIM---------KMHFYALYYFQKALELKPN----DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred -HHhhhhHHHHHh---------cchHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 999999999998 8889999999999999999 67799999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHH
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ-------SPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKR 314 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~ 314 (409)
..++..+|.+|.++++.++|..+|++.++. .|+-..+...|+.-....+..++..+|-.+.+.-+...+|.+.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~ 545 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA 545 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence 999999999999999999999999999984 3444455555555555555555666665554444444555555
Q ss_pred HHHHHHh
Q 043837 315 AYKKLAL 321 (409)
Q Consensus 315 ~y~~~a~ 321 (409)
-.|.+..
T Consensus 546 LlReir~ 552 (559)
T KOG1155|consen 546 LLREIRK 552 (559)
T ss_pred HHHHHHH
Confidence 5555433
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.8e-25 Score=200.95 Aligned_cols=261 Identities=16% Similarity=0.168 Sum_probs=237.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
|.+|++|..+|+.+-...|-..+..-....+++.+.+--+--..+...+. .....+.|...+.++--+++++.||++|.
T Consensus 366 l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~ 445 (638)
T KOG1126|consen 366 LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFK 445 (638)
T ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHH
Confidence 46799999999999999998887777778888888774432233333333 23456788888999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+ +++++|....+|..+|.-+....++++|..+|+++|..+|.+..+|+.+|.+|.++++++.|.-+|++|+.++|.+..
T Consensus 446 R-AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 446 R-AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred H-hhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
....++.++..+ |+.++|+.+|++|+.++|. ++...+..+.++..++++++|+..+++.-++-|
T Consensus 525 ---i~~~~g~~~~~~---------k~~d~AL~~~~~A~~ld~k----n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 525 ---ILCHIGRIQHQL---------KRKDKALQLYEKAIHLDPK----NPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred ---HHhhhhHHHHHh---------hhhhHHHHHHHHHHhcCCC----CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 899999999999 9999999999999999999 666999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI 278 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 278 (409)
++..+++.+|.+|..+|+.+.|+..|.-|+.++|.-.++
T Consensus 589 ~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 999999999999999999999999999999999986553
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.5e-24 Score=212.83 Aligned_cols=267 Identities=13% Similarity=-0.013 Sum_probs=242.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
+++.+|+..+.+++...|++. .+..+|.++...|++++|+..+.+.+.........+..+..+...|++++|+.++.+
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q- 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ- 567 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence 467889999999999999865 467778888999999999999998776544455577888999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
++..+|.....+..++......|++++|+..|+++++++|+ +.++..+|.++..+|++++|+..|++++.++|++..
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~-- 644 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN-- 644 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--
Confidence 88889998888888887778889999999999999999996 999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
++.+++.++... |++++|+..|++++++.|+ ++.++.++|.++..+|++++|+..|+++++++|++
T Consensus 645 -a~~nLG~aL~~~---------G~~eeAi~~l~~AL~l~P~----~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 645 -YQAALGYALWDS---------GDIAQSREMLERAHKGLPD----DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred -HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999888 9999999999999999999 77899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
..+....|.+.....++..|.+.+++...++|+.. +......+...
T Consensus 711 a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~ 756 (987)
T PRK09782 711 ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTA 756 (987)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhh
Confidence 99999999999999999999999999999999977 55555554443
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.4e-24 Score=184.47 Aligned_cols=169 Identities=22% Similarity=0.286 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN 169 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 169 (409)
+.++...|..++-.|++-.|...++.+|.++|.+...|..++.+|...++.++-...|.+|..++|++++ +|+..+.
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d---vYyHRgQ 402 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD---VYYHRGQ 402 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc---hhHhHHH
Confidence 5677888899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
+...+ +++++|+..|++++.++|+ ++..+..+|.+.+++++++++...|+.+++..|+.++.+...|
T Consensus 403 m~flL---------~q~e~A~aDF~Kai~L~pe----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fA 469 (606)
T KOG0547|consen 403 MRFLL---------QQYEEAIADFQKAISLDPE----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFA 469 (606)
T ss_pred HHHHH---------HHHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99988 9999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 250 EAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
.++..+++++.|++.|.+|+++.|.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999998
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=6.5e-22 Score=195.31 Aligned_cols=324 Identities=13% Similarity=0.020 Sum_probs=224.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
+|++++|+..|+++++.+|.++.++..++.++...|++++|+..+.+.+...+ ... ++..+..+...|++++|+..++
T Consensus 62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888888877543 334 6777888888888888888888
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHH----------------------------------------------HHH
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAI----------------------------------------------SET 113 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~----------------------------------------------~~~ 113 (409)
+ ++...|+++.++..++.++...+..++|+ ..+
T Consensus 141 ~-al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 141 Q-ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred H-HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 8 78888888887777777776555544333 333
Q ss_pred HHHHhhCCCCHHH-------HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH-------------
Q 043837 114 GYLLKEDENNLEA-------LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK------------- 173 (409)
Q Consensus 114 ~~al~~~p~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~------------- 173 (409)
+.+++..|.++.. ......++...+++++|+..|+++++..|..+.....+ ++.++..
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHH
Confidence 3333322222111 11111123455667777777777666543211100010 1111110
Q ss_pred ----------------HHHHhhHHhcCCHHHHHHHHHHHHccCCCCc----------c-chHHHHHHHHHHHHHcCChhH
Q 043837 174 ----------------TKSAEDNVSKGKLRVAVEDFKAALALDPNHT----------A-HNVHLYLGLCKVLVKLGRGKD 226 (409)
Q Consensus 174 ----------------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~-~~~~~~~~la~~~~~~~~~~~ 226 (409)
...+..+++.+++++|+..++++....|... . ....++..++.++...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 0012233456999999999999999877421 1 024577899999999999999
Q ss_pred HHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhccccc
Q 043837 227 ALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKT 306 (409)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 306 (409)
|+..+++++...|.++.++..+|.++...|++++|+..++++++++|++..+...+..+...++.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~--------------- 442 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE--------------- 442 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC---------------
Confidence 99999999999999999999999999999999999999999999999999987777766555443
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhh
Q 043837 307 ASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355 (409)
Q Consensus 307 ~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~ 355 (409)
.+++...++++.. ..||.. ..+.+.+++++---|+.|
T Consensus 443 --~~~A~~~~~~ll~-~~Pd~~---------~~~~~~~~~~~~~~~~l~ 479 (765)
T PRK10049 443 --WRQMDVLTDDVVA-REPQDP---------GVQRLARARDVHHMAELR 479 (765)
T ss_pred --HHHHHHHHHHHHH-hCCCCH---------HHHHHHHHHHhccCceEE
Confidence 6777777777444 455543 233455566555555554
No 23
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.8e-22 Score=175.47 Aligned_cols=223 Identities=20% Similarity=0.277 Sum_probs=186.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHH
Q 043837 61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-------EALLHRGRA 133 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~ 133 (409)
.+...++..++..|++.|.. ++.++ .+...+.+.+.+|+..+.+.+++..+.++++...... .++..+|..
T Consensus 230 lgnaaykkk~f~~a~q~y~~-a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAK-ALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHH-HHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 33444556889999999998 88888 8889999999999999999999999999888654422 234456778
Q ss_pred HHhcCChHHHHHHHHHHHccCCC--cHH-------HH-----HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPE--HSE-------LK-----KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL 199 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~--~~~-------~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 199 (409)
|...++++.|+.+|.+++.-..+ ... .. .++..--........+..++..++|..|+..|+++|..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 88889999999999999875433 211 00 01111111233445688899999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837 200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 279 (409)
+|+ ++.+|.|+|.||.+++.+..|+..++.+++++|+...+|.+.|.++..+.+|++|.+.|+++++++|++.++.
T Consensus 388 ~P~----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 388 DPE----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred CCc----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 999 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 043837 280 EALMRAEKAL 289 (409)
Q Consensus 280 ~~l~~~~~~~ 289 (409)
..+.+|...+
T Consensus 464 ~~~~rc~~a~ 473 (539)
T KOG0548|consen 464 DGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=1.9e-21 Score=192.06 Aligned_cols=307 Identities=14% Similarity=0.041 Sum_probs=227.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++++|+..+.+++..+|..+.++..+|.++...|++++|...+.+.+.. +......+..+..+...+++++|+..+.
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999886 3446667788999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHH-----------
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ----------- 148 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~----------- 148 (409)
+ ++...|.++. +..+|.++...|++++|+..++++++.+|+++.++..++.++...+..++|+..++
T Consensus 108 ~-~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 108 Q-LVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred H-HHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 9 8899999999 99999999999999999999999999999999999999999887777665554444
Q ss_pred -----------------------------------HHHccCCCcHH----HHHHHHH-HHHHHHH---------------
Q 043837 149 -----------------------------------KGLRLDPEHSE----LKKAYFA-LKNLLKK--------------- 173 (409)
Q Consensus 149 -----------------------------------~al~~~p~~~~----~~~~~~~-l~~~~~~--------------- 173 (409)
.++...|.++. ...+... ++.++..
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 33332222211 0001110 1111100
Q ss_pred ----------HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---
Q 043837 174 ----------TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE--- 240 (409)
Q Consensus 174 ----------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--- 240 (409)
...+..++..+++++|+..|++++...|.++.........++.++...+++++|+..++++....|.
T Consensus 266 ~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 266 EGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 0023345556777777777777777666532112345666666777778888888888877776652
Q ss_pred ------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCC
Q 043837 241 ------------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTAS 308 (409)
Q Consensus 241 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (409)
...++..++.++...|++++|+..+++++...|++..++..++.+....+.
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~----------------- 408 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW----------------- 408 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-----------------
Confidence 234666777788888888888888888888888887777777776665554
Q ss_pred HHHHHHHHHHHHhccCCCC
Q 043837 309 ISEIKRAYKKLALQWHPDK 327 (409)
Q Consensus 309 ~~e~~~~y~~~a~~~~~d~ 327 (409)
.++..+.+++ +...+||.
T Consensus 409 ~~~A~~~l~~-al~l~Pd~ 426 (765)
T PRK10049 409 PRAAENELKK-AEVLEPRN 426 (765)
T ss_pred HHHHHHHHHH-HHhhCCCC
Confidence 5566666665 45555665
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-22 Score=174.26 Aligned_cols=269 Identities=19% Similarity=0.159 Sum_probs=223.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
.++++|+..|+.+++.+|-..+-.-...++++-..+-.+-.-.+...... -...+..--.|.-+--.++.++|+.+|.+
T Consensus 276 rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkR 355 (559)
T KOG1155|consen 276 RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKR 355 (559)
T ss_pred hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHH
Confidence 57999999999999999977666666666665554422211111111110 00111122234445556788999999988
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
+++++|....+|..+|.-|..+++...|++.|++|++++|.+..+|+.+|.+|..++-+.=|+-+|++|+.+-|++..
T Consensus 356 -ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR- 433 (559)
T KOG1155|consen 356 -ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR- 433 (559)
T ss_pred -HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh----
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN---- 236 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---- 236 (409)
.|..+|.+|..+ ++.++|+.+|.+++..... +..++..+|.+|-++++..+|..+|++.++
T Consensus 434 --lw~aLG~CY~kl---------~~~~eAiKCykrai~~~dt----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 434 --LWVALGECYEKL---------NRLEEAIKCYKRAILLGDT----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred --HHHHHHHHHHHh---------ccHHHHHHHHHHHHhcccc----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999999999887 677999999999999999999999999998
Q ss_pred ---cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 237 ---INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 237 ---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
.+|+...+...+|.-+.+.+++++|..+..+++.-++.-.+....+..+..
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRK 552 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 567778889999999999999999999999999887666666555555443
No 26
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-22 Score=178.48 Aligned_cols=273 Identities=17% Similarity=0.138 Sum_probs=244.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
.+|.+..+.++..++.+|-+...+...--|+..+|+..+-.-...+.+.. +..+..|+..|.-++..+++.+|..+|.+
T Consensus 258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 57889999999999999988877766555999999977655555555553 44578899999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
+..++|....+|...|.++...++.++|+.+|..|-++-|......+.+|.-|..+++++.|..+|.+|+.+.|.++-
T Consensus 338 -at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl- 415 (611)
T KOG1173|consen 338 -ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL- 415 (611)
T ss_pred -HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC----CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP----NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
++..+|.+.... +.|.+|+.+|+.++..-+ ..+ .....+.++|.++.+++++++|+.+++++|.
T Consensus 416 --v~~Elgvvay~~---------~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 416 --VLHELGVVAYTY---------EEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred --hhhhhhheeehH---------hhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888887777 999999999999995332 221 1445789999999999999999999999999
Q ss_pred cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
+.|.++.++..+|.+|..+|+++.|+.+|.+++.+.|++.-+...|..+...
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998888877655
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=3e-22 Score=190.72 Aligned_cols=226 Identities=12% Similarity=0.006 Sum_probs=194.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837 3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV 82 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 82 (409)
++++|+.+|+++++++|+++.++..+|.++..++.... ....+++++|+..+++ +
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~------------------------~~~~~~~~~A~~~~~~-A 330 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI------------------------FDKQNAMIKAKEHAIK-A 330 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC------------------------cccchHHHHHHHHHHH-H
Confidence 36789999999999999999999999988875543110 1123567888888888 9
Q ss_pred HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837 83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162 (409)
Q Consensus 83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (409)
++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++.++|.+..
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--- 407 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--- 407 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
.+..++.++... |++++|+..+++++... |+ .+.++.++|.++..+|++++|+..+.+++...|..
T Consensus 408 ~~~~~~~~~~~~---------g~~eeA~~~~~~~l~~~~p~----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 408 AGITKLWITYYH---------TGIDDAIRLGDELRSQHLQD----NPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred hHHHHHHHHHhc---------cCHHHHHHHHHHHHHhcccc----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 444444444444 99999999999999875 66 56689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
..+...++.+|...|+ +|...+++.++.
T Consensus 475 ~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 475 LIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 9999999999998884 777777766553
No 28
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.2e-21 Score=169.69 Aligned_cols=318 Identities=17% Similarity=0.150 Sum_probs=227.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|+|+.|+.+|..+|.++|.+.-.|.++..+|..+|+|++|+....+.....+ -+..+..++..++-.|+|++|+..|.+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999988888877433 456777888999999999999999988
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccC------------------------HHHHHHHHHHHHhhCCCC-------------
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKD------------------------YASAISETGYLLKEDENN------------- 123 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~------------------------~~~A~~~~~~al~~~p~~------------- 123 (409)
-++.+|++..++..++.++...-. .+.+.......+..+|.+
T Consensus 96 -GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 96 -GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred -HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 888888888877777776622200 000111111111111100
Q ss_pred -------------------------------------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837 124 -------------------------------------------------LEALLHRGRAYYYLADHDVAQRHFQKGLRLD 154 (409)
Q Consensus 124 -------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 154 (409)
....-.+|...+...+++.|+++|..++.++
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 0023456667777777777777777777766
Q ss_pred CCcHHHHHHHHH----------------------------------HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC
Q 043837 155 PEHSELKKAYFA----------------------------------LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD 200 (409)
Q Consensus 155 p~~~~~~~~~~~----------------------------------l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 200 (409)
.+.. .+.+ |+.++.. .+..+...++++.|+.+|.+++...
T Consensus 255 -~~it---~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r--~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 255 -TDIT---YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR--LGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred -hhhH---HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH--hhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 3332 2222 2222222 2445556689999999999988643
Q ss_pred CC--Cc--------------------cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837 201 PN--HT--------------------AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW 258 (409)
Q Consensus 201 ~~--~~--------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 258 (409)
.+ .. .....--...|..++..|+|..|+..|.++|..+|+++.+|.++|.||.+++.+
T Consensus 329 Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~ 408 (539)
T KOG0548|consen 329 RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY 408 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH
Confidence 22 10 002334456699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch--hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC
Q 043837 259 EGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR--KDWYKILGVSKTASISEIKRAYKKLALQWHPDKN 328 (409)
Q Consensus 259 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~ 328 (409)
..|+.+.+++++++|+....+..-+.+...++.... ..|.+.|.++ .+..++...|++.....+.+..
T Consensus 409 ~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~a~~~~~~ 478 (539)
T KOG0548|consen 409 PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVEAQRGDET 478 (539)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999988888888888876654 3344555444 5567777777776555444433
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.3e-20 Score=173.70 Aligned_cols=252 Identities=17% Similarity=0.047 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc----HHHHHHHH
Q 043837 23 EAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC----SKAKLLKV 97 (409)
Q Consensus 23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~----~~~~~~~a 97 (409)
...+.+|..+...|++++|+..+.+++... ......+..+..+...|++++|+..+++ ++...+.. ..++..+|
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQN-LLSRPDLTREQRLLALQELG 114 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHH
Confidence 456677999999999999999999999853 3455678889999999999999999988 55543222 35788999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHHHHHH
Q 043837 98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL--KKAYFALKNLLKKTK 175 (409)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~l~~~~~~~~ 175 (409)
.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+... ...+..++.++...
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~- 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR- 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999999999999999999999988776431 12334455554444
Q ss_pred HHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-HHHHHHHHHHHHh
Q 043837 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL-IEALVQRGEAKLL 254 (409)
Q Consensus 176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 254 (409)
+++++|+..++++++..|+ ...++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|..
T Consensus 194 --------~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 194 --------GDLDAARALLKKALAADPQ----CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred --------CCHHHHHHHHHHHHhHCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 9999999999999999998 67789999999999999999999999999998876 4677889999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 255 TEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 255 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
.|++++|+..++++++..|+...+ ..+..+....
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~ 295 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQ 295 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHh
Confidence 999999999999999999987544 4455544433
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.91 E-value=2.3e-21 Score=169.87 Aligned_cols=212 Identities=19% Similarity=0.156 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY 134 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 134 (409)
+..++.++..+...|++++|+..|.+ +++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.++|.++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~-Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQ-ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44456666666777777788888877 89999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837 135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 214 (409)
...|++++|+..+++++..+|+++.. ..|..+ .... +++++|+..+.+++...+.. .| ..
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l---~~~~---------~~~~~A~~~l~~~~~~~~~~------~~-~~ 202 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYL---AESK---------LDPKQAKENLKQRYEKLDKE------QW-GW 202 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHH---HHcc---------CCHHHHHHHHHHHHhhCCcc------cc-HH
Confidence 99999999999999999999998731 122211 1222 88999999998877554321 12 13
Q ss_pred HHHHHHcCChhHHHHHHHHH-------HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHH
Q 043837 215 CKVLVKLGRGKDALSSCTEA-------LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP-QDMNIREALMRAE 286 (409)
Q Consensus 215 a~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 286 (409)
+.++..+|++..+ ..++.+ +++.|+.+++|+.+|.++..+|++++|+.+|+++++.+| +..+.+..+....
T Consensus 203 ~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 203 NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5666667776544 233333 356677889999999999999999999999999999996 6666665555544
Q ss_pred HH
Q 043837 287 KA 288 (409)
Q Consensus 287 ~~ 288 (409)
..
T Consensus 282 ~~ 283 (296)
T PRK11189 282 LL 283 (296)
T ss_pred HH
Confidence 43
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=8e-24 Score=185.24 Aligned_cols=253 Identities=23% Similarity=0.239 Sum_probs=115.8
Q ss_pred CCChHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837 1 MKHYSEALDDLNTAIE-A-DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYI 78 (409)
Q Consensus 1 lg~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 78 (409)
.|++++|++++.+.+. . .|+++..|..+|.+...+++++.|...+.+.+.........+.....++..+++++|+.++
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~ 100 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLA 100 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3789999999976654 4 4889999999999999999999999999998887666666666666668899999999998
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 043837 79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED--ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE 156 (409)
Q Consensus 79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 156 (409)
.+ ..+.. .++..+.....++...++++++...+.++.... +.++..|..+|.++...|++++|+..++++++++|+
T Consensus 101 ~~-~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 101 EK-AYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp -------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred cc-ccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 77 44444 456777788888999999999999999987655 677889999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 157 HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
+.. ++..++.++... |+++++...+....+..|++ +.++..+|.++..+|++++|+.++++++.
T Consensus 179 ~~~---~~~~l~~~li~~---------~~~~~~~~~l~~~~~~~~~~----~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 179 DPD---ARNALAWLLIDM---------GDYDEAREALKRLLKAAPDD----PDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp -HH---HHHHHHHHHCTT---------CHHHHHHHHHHHHHHH-HTS----CCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHC---------CChHHHHHHHHHHHHHCcCH----HHHHHHHHHHhcccccccccccccccccc
Confidence 998 777777776555 99999888888887777773 34888999999999999999999999999
Q ss_pred cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
.+|+++..+..+|.++...|+.++|...++++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999988763
No 32
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-22 Score=170.89 Aligned_cols=280 Identities=20% Similarity=0.228 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH----
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHR---- 130 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---- 130 (409)
+.....++..++++.+|.+|+..|.. ++...|.++..|.+++.+++..++|++|.-..++.++++|..+..+...
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~-Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTF-AIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHH-HHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 34445555566666666666666666 6666666666666666666666666666666666666665554444444
Q ss_pred ------------------------------------------------HHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837 131 ------------------------------------------------GRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162 (409)
Q Consensus 131 ------------------------------------------------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (409)
+.|+..++++++|...--..+++++.+.+
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~--- 204 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE--- 204 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH---
Confidence 44555555555555555555666666655
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc--------hHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--------NVHLYLGLCKVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a 234 (409)
+++..+.++... .+.+.|+..|++++.++|++... ....+...|.-.++.|++..|.++|..+
T Consensus 205 al~vrg~~~yy~---------~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 205 ALYVRGLCLYYN---------DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred HHHhcccccccc---------cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 555555555555 89999999999999999986531 3456677888899999999999999999
Q ss_pred HhcChhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch--hhhhhhhcccccCC
Q 043837 235 LNINEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR--KDWYKILGVSKTAS 308 (409)
Q Consensus 235 l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~ 308 (409)
|.++|++ ...|.+++.+...+|+..+|+...+.+++++|....+....+.|+..+.+... .++-+.+..+.+
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-- 353 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-- 353 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence 9999975 67789999999999999999999999999999999988888899888887665 344455555544
Q ss_pred HHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcC
Q 043837 309 ISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLG 350 (409)
Q Consensus 309 ~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~ 350 (409)
-++++..+++.+.....+... -.-.-...-.+|++||+++.
T Consensus 354 -~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~A 398 (486)
T KOG0550|consen 354 -CEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLA 398 (486)
T ss_pred -cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHH
Confidence 344444444333222111111 00111122337999998877
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=3.7e-20 Score=159.64 Aligned_cols=270 Identities=18% Similarity=0.156 Sum_probs=174.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhH-------------------------------------
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNS------------------------------------- 43 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~------------------------------------- 43 (409)
+|+|+.||..|+.+++..|+...++ ++..|++..|+-++-..
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~-nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAAL-NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhh-hhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 4889999999999999999877655 56677777777544311
Q ss_pred ------------------------------------HHHHHHHH----HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837 44 ------------------------------------VAEKELSQ----LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL 83 (409)
Q Consensus 44 ------------------------------------~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 83 (409)
++.+.+.. .........+|..++++|+++.|++++.- ..
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv-~~ 446 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV-FE 446 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH-HH
Confidence 11111111 11122235677888999999999998864 22
Q ss_pred hhC-CCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 84 VFS-PACSKAKLLKVKLLLAA--KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 84 ~~~-p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
..+ .....+-.++..+++.+ .++..|..+...++.++.-++.++.+.|.+-+..|++++|.+.|+.+|.-+....+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e- 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE- 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-
Confidence 222 12233344444444442 35666777777777777767777777777777777777777777777665544444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
++++++..+..+ |+.++|+.+|-+...+--+ ++.+++.++.+|..+.+..+|++++.++..+-|+
T Consensus 526 --alfniglt~e~~---------~~ldeald~f~klh~il~n----n~evl~qianiye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 526 --ALFNIGLTAEAL---------GNLDEALDCFLKLHAILLN----NAEVLVQIANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred --HHHHhcccHHHh---------cCHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 677777766666 7777777777666665555 5666777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
++.++..+|.+|-+.|+..+|.+++-......|.+.+..++|...+..
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 777777777777777777777776666666667666666666554443
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.7e-20 Score=173.97 Aligned_cols=284 Identities=21% Similarity=0.188 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH----HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL----LQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
+..++..+.++...+|++|.++..++.-++..|+++.+...+..++... ..+.+.|..|..+..+|+|++|..+|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 5667777777777888888888888888888888888888888877754 667889999999999999999999999
Q ss_pred HHHHhhCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHccC
Q 043837 80 KVVLVFSPAC-SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA----DHDVAQRHFQKGLRLD 154 (409)
Q Consensus 80 ~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~~ 154 (409)
+ ++..+|++ ...++.+|..++..|+++.|+.+|+++++..|++.++...+|.+|...+ ..+.|..++.+++...
T Consensus 332 ~-s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 E-SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred H-HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 8 78888877 8889999999999999999999999999999999999999999998886 6789999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHH-----------------------------HHhhHHhcCCHHHHHHHHHHHHcc-----C
Q 043837 155 PEHSELKKAYFALKNLLKKTK-----------------------------SAEDNVSKGKLRVAVEDFKAALAL-----D 200 (409)
Q Consensus 155 p~~~~~~~~~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~A~~~~~~al~~-----~ 200 (409)
|.+.. +|..++.++.... .|...+..|++.+|...+.+++.. +
T Consensus 411 ~~d~~---a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 411 PVDSE---AWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cccHH---HHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 99988 7777777665332 233445559999999999999876 2
Q ss_pred CCC-ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837 201 PNH-TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 201 ~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 279 (409)
++. ...+....+|+|.++-.+++++.|.+.|..+++.+|...+++..++......++..+|...+..++..+..+++++
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 222 1124557899999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 043837 280 EALMRAEKALKM 291 (409)
Q Consensus 280 ~~l~~~~~~~~~ 291 (409)
..++..+.....
T Consensus 568 sl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 568 SLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHHhhhh
Confidence 999977655443
No 35
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=6.1e-22 Score=163.64 Aligned_cols=239 Identities=17% Similarity=0.142 Sum_probs=225.3
Q ss_pred HHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC
Q 043837 26 FHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD 105 (409)
Q Consensus 26 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~ 105 (409)
..+|+||+++|-+.+|...++..+...+..+...-.+..+-+..+...|+..+.+ .+...|.++..+...|+++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~-gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGE-GLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhh-hhhcCCchhhhhhhhHHHHHHHHh
Confidence 5689999999999999999999999988888899999999999999999999998 889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK 185 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (409)
+++|+++|+.+++.+|.+.++.-.+|.-|+.-++.+-|+.+|++.|.+--.+++ .+.+++.+...- ++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---Lf~NigLCC~ya---------qQ 373 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---LFCNIGLCCLYA---------QQ 373 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH---HHhhHHHHHHhh---------cc
Confidence 999999999999999999999999999999999999999999999999999998 999999999888 99
Q ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837 186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDL 265 (409)
Q Consensus 186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 265 (409)
++-++..|.+++....+... .+.+|+|+|.+....|++.-|..+|+-++..++++.+++.++|.+-...|+.++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~-aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQ-AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcch-hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 99999999999987654333 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHH
Q 043837 266 KSAAQQSPQDMNI 278 (409)
Q Consensus 266 ~~al~~~p~~~~~ 278 (409)
+.+-...|+-.+.
T Consensus 453 ~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 453 NAAKSVMPDMAEV 465 (478)
T ss_pred HHhhhhCcccccc
Confidence 9999999985443
No 36
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.6e-23 Score=176.66 Aligned_cols=71 Identities=56% Similarity=0.892 Sum_probs=66.1
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcc
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIE 365 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~ 365 (409)
..+||++|+|+++++.+|||+|||+||++||||+++.+ ++|+++|++|++|||+|+||+||+.||++....
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~ 73 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAG 73 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccc
Confidence 57899999999999999999999999999999999964 699999999999999999999999999966544
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=2.2e-20 Score=177.99 Aligned_cols=202 Identities=16% Similarity=0.048 Sum_probs=181.4
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---------DYASAISETGYLLKEDENNLEALLHRGRAYYYLAD 139 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 139 (409)
.++++|+.+|++ +++.+|+++.++..+|.|+...+ ++++|+..++++++++|+++.++..+|.++...|+
T Consensus 275 ~~~~~A~~~~~~-Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQ-CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 456899999998 99999999999999999887543 48999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837 140 HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV 219 (409)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~ 219 (409)
+++|+..|+++++++|++.. ++..++.++... |++++|+..++++++++|. ....+..++.+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~---------G~~~eAi~~~~~Al~l~P~----~~~~~~~~~~~~~ 417 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISAD---IKYYYGWNLFMA---------GQLEEALQTINECLKLDPT----RAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHH
Confidence 99999999999999999999 899999998888 9999999999999999999 4445566677788
Q ss_pred HcCChhHHHHHHHHHHhcC-hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 220 KLGRGKDALSSCTEALNIN-EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
..|++++|+..+++++... |+++.++..+|.++..+|++++|+..+.++....|.+......+...+.
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 8999999999999999875 7889999999999999999999999999998888887777666655543
No 38
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.7e-20 Score=157.67 Aligned_cols=272 Identities=18% Similarity=0.139 Sum_probs=234.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|++++|+..|+++.-+||.+..+.-..|.++...|+++.-.......+... ..+..++..+..++..+++..|+.+-++
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 788888888888888888888888888888888888887666666666654 4566777788888899999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
++..+|++..++...|..+...++.++|+-.|+.+..+-|...+.|..+-.+|...+++.+|.-.-+.++...|.+..
T Consensus 326 -~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~- 403 (564)
T KOG1174|consen 326 -CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR- 403 (564)
T ss_pred -HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh-
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHH-HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 161 KKAYFALK-NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 161 ~~~~~~l~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
.+..+| .+... ...--++|...+++++++.|. ...+...++.++...|.+..++..+++.+...|
T Consensus 404 --~LtL~g~~V~~~--------dp~~rEKAKkf~ek~L~~~P~----Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 404 --SLTLFGTLVLFP--------DPRMREKAKKFAEKSLKINPI----YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP 469 (564)
T ss_pred --hhhhhcceeecc--------CchhHHHHHHHHHhhhccCCc----cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence 666664 32221 113357899999999999999 677889999999999999999999999999887
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
+ ...+..+|.++...+.+.+|.++|..|+.++|++....+.+.++++..+
T Consensus 470 D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 470 D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 5 4578899999999999999999999999999999988888887766443
No 39
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=7.2e-21 Score=168.88 Aligned_cols=229 Identities=21% Similarity=0.228 Sum_probs=190.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL 137 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 137 (409)
-|..+..+++.|+..+|+-+|+. ++..+|.+.++|..||.+....++-..||..++++++++|++.+++..||.+|...
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEA-AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEA-AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHH-HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 47899999999999999999988 89999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCCCcHHH-----------------HHHHHHHHHHHH--------------HHHHHhhHHhcCCH
Q 043837 138 ADHDVAQRHFQKGLRLDPEHSEL-----------------KKAYFALKNLLK--------------KTKSAEDNVSKGKL 186 (409)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~-----------------~~~~~~l~~~~~--------------~~~~~~~~~~~~~~ 186 (409)
|.-.+|+.++.+-+...|..... ...+..+...+. ....+..+.-.++|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999999987644321100 001111111111 11123333444999
Q ss_pred HHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHH
Q 043837 187 RVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLK 266 (409)
Q Consensus 187 ~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 266 (409)
+.|+.+|+.||...|+ +..+|..||.++..-.+.++|+..|++|+++.|....+++++|.+++.+|.|++|+++|-
T Consensus 447 draiDcf~~AL~v~Pn----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPN----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHhcCCc----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999 788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCc----------HHHHHHHHHHHHHHhh
Q 043837 267 SAAQQSPQD----------MNIREALMRAEKALKM 291 (409)
Q Consensus 267 ~al~~~p~~----------~~~~~~l~~~~~~~~~ 291 (409)
.||.+.+.. ..++..|..+....+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999987662 2466766655554443
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6e-20 Score=171.69 Aligned_cols=276 Identities=16% Similarity=0.168 Sum_probs=245.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH--HHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ--AQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
++.|...|..++...|++..+++..|.+.+..++|..|+.+|..++...+. +....-.+.++.+.++.+.|+..+.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r- 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER- 224 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH-
Confidence 588999999999999999999999999999999999999999998775443 44556677888999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKD---YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (409)
+++++|.++.++..||.+-+...+ +..++..+.++...+|.+|.++..|+.-++..++|..+......++.......
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999998876654 67899999999999999999999999999999999999999999998776655
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 238 (409)
.....++.+|.++..+ |+|++|..+|.++++.+|++ ....++.+|+.++..|+++.|+.+|+++++..
T Consensus 305 ~~aes~Y~~gRs~Ha~---------Gd~ekA~~yY~~s~k~~~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQ---------GDFEKAFKYYMESLKADNDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred HHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHccCCCC---ccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 5566789999999888 99999999999999999984 36678899999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHhcc----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837 239 EELIEALVQRGEAKLLTE----DWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS 292 (409)
Q Consensus 239 p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 292 (409)
|++.++...+|.+|...+ ..+.|..++.++++..|.+.+++..++.+...-...
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH
Confidence 999999999999998886 678999999999999999999888888776654433
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=5.1e-19 Score=164.51 Aligned_cols=285 Identities=16% Similarity=0.152 Sum_probs=216.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|++++|+..+.++|..+|.++.+|..+|.+|.++|+.+++......+-. .+.+..-|...+.....+|++.+|+-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7899999999999999999999999999999999999998766544433 333446677777888888999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-----EALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 155 (409)
+++.+|.+....+.++.+|.++|+...|++.|.+++..+|... +.....+..+...++-+.|++.++.++....
T Consensus 233 -AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 -AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred -HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999321 2334557788888888999999999888322
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhh------------------------------------------------------HH
Q 043837 156 EHSELKKAYFALKNLLKKTKSAED------------------------------------------------------NV 181 (409)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~------------------------------------------------------~~ 181 (409)
+-... .-+..++.++........ .+
T Consensus 312 ~~~~~-ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASL-EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred ccccc-cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 11110 022223333322210000 00
Q ss_pred hcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-hcHHHHHHHHHHHHhccCHHH
Q 043837 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE-ELIEALVQRGEAKLLTEDWEG 260 (409)
Q Consensus 182 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~ 260 (409)
+..+..+++..+..--...|. ..+.++..++.++...|++.+|+.++..++...+ ++..+|+.+|.||..++.+++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~---d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVS---DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccchHHHHHHHHHHhcCChh---hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 112222222222211111122 2577899999999999999999999999988766 457899999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 261 AVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
|+++|++++.+.|++.+++..|..++..+..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 9999999999999999999999998887765
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=1.4e-19 Score=154.37 Aligned_cols=202 Identities=19% Similarity=0.126 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY 134 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 134 (409)
....+..+..++..+++++|+..+++ ++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~-~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDK-ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 45556677777888888888888887 77778888888888888888888888888888888888888888888888888
Q ss_pred HhcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837 135 YYLADHDVAQRHFQKGLRLD--PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL 212 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 212 (409)
...|++++|+..+++++... +.... .+..++.++... |++++|+..+.+++...|+ ....+.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~----~~~~~~ 173 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPAR---SLENAGLCALKA---------GDFDKAEKYLTRALQIDPQ----RPESLL 173 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcC----ChHHHH
Confidence 88888888888888888753 22333 566667666666 8888888888888888887 566788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 213 GLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 213 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
.++.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 8888888888888888888888888787888888888888888888888888777665543
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=3.6e-19 Score=153.66 Aligned_cols=212 Identities=17% Similarity=0.135 Sum_probs=138.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 043837 59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA 138 (409)
Q Consensus 59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 138 (409)
.+++...+..|++++|.+.|.+ ++..+.....+++++|..+..+|+.++|+++|-++-.+--++.++++.++.+|..+.
T Consensus 494 ~nkgn~~f~ngd~dka~~~yke-al~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKE-ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHH-HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3344444555666666666666 666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHH
Q 043837 139 DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL 218 (409)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~ 218 (409)
+..+|++++-++..+-|+++. ++..++.+|... |+-.+|..++-...+..|. +.+....++..|
T Consensus 573 d~aqaie~~~q~~slip~dp~---ilskl~dlydqe---------gdksqafq~~ydsyryfp~----nie~iewl~ayy 636 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPNDPA---ILSKLADLYDQE---------GDKSQAFQCHYDSYRYFPC----NIETIEWLAAYY 636 (840)
T ss_pred CHHHHHHHHHHhcccCCCCHH---HHHHHHHHhhcc---------cchhhhhhhhhhcccccCc----chHHHHHHHHHH
Confidence 666666666666666666666 666666666555 6666666666666666666 555666666666
Q ss_pred HHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
....-+++|+.+|+++--+.|+.......++.|+...|+|.+|...|+..-...|.+.+....|.++..
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 666666677777777666666666666666677777777777777776666666666665555555443
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.87 E-value=5.6e-19 Score=162.44 Aligned_cols=274 Identities=12% Similarity=0.011 Sum_probs=220.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH--HHHHHHHHHHhCCCchHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ--STFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
|+++.|.+.+.++.+..|+....+...|.++..+|+++.|...+.+.....+... .....+..++..++++.|+..++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999999888899999999999999999999999877555443 33445888899999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALL----HRGRAYYYLADHDVAQRHFQKGLRLDP 155 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~l~~~~~~~~~~~~A~~~~~~al~~~p 155 (409)
. +.+..|+++.++..++.++...|++++|++.+.+.++..+.++..+. ....-+...+..+++...+.++....|
T Consensus 178 ~-l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 178 K-LLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred H-HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 8 88999999999999999999999999999999999987554444331 222222444455566678888888777
Q ss_pred ----CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 156 ----EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 156 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
+++. .+..++..+... |++++|+..++++++..|++.... ............++.+.+++.+
T Consensus 257 ~~~~~~~~---l~~~~a~~l~~~---------g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 257 RHRRHNIA---LKIALAEHLIDC---------DDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHhCCHH---HHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCCcccch--hHHHHHhhhcCCCChHHHHHHH
Confidence 3555 777777777666 999999999999999999854211 1123333444567889999999
Q ss_pred HHHHhcChhcH--HHHHHHHHHHHhccCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 232 TEALNINEELI--EALVQRGEAKLLTEDWEGAVEDLK--SAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 232 ~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
+++++.+|+++ ..+..+|++++..|+|++|.++|+ .+++..|++... ..+..+...++.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~ 385 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGD 385 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCC
Confidence 99999999999 889999999999999999999999 688888987664 477777766655
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.87 E-value=1.6e-19 Score=142.76 Aligned_cols=210 Identities=20% Similarity=0.153 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA 133 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 133 (409)
.......+|+.++..|++..|...+++ +++.+|++..+|..+|.+|...|+.+.|-+.|+++++++|++.+++++.|..
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlek-AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEK-ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 344556677777777777777777777 7777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 213 (409)
++.+|++++|...|++|+.. |........+.+++.|.... |+++.|..+|+++++++|+ .+.....
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~---------gq~~~A~~~l~raL~~dp~----~~~~~l~ 178 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKA---------GQFDQAEEYLKRALELDPQ----FPPALLE 178 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhc---------CCchhHHHHHHHHHHhCcC----CChHHHH
Confidence 77777777777777777652 44433333666666666555 7777777777777777777 4446667
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837 214 LCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI 278 (409)
Q Consensus 214 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 278 (409)
++..+++.|++..|..++++....-+-..+.+.....+-...|+-+.|-++=.+.....|...+.
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 77777777777777777777666656666666666666666777777766666666666666554
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.87 E-value=7.7e-20 Score=144.53 Aligned_cols=187 Identities=24% Similarity=0.240 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN 169 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 169 (409)
..+++.+|.-|+..|++..|...++++|+.+|++..+|..++.+|..+|+.+.|.+.|++|++++|++.+ ++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---VLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---VLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---hhhhhhH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
.+... |++++|...|++|+.. |..+. .+..+.|+|.|.++.|+++.|..+|+++++++|+.+.+...++
T Consensus 112 FLC~q---------g~~~eA~q~F~~Al~~-P~Y~~-~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 112 FLCAQ---------GRPEEAMQQFERALAD-PAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred HHHhC---------CChHHHHHHHHHHHhC-CCCCC-cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 99888 9999999999999973 33222 5679999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 250 EAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
..+++.|+|-.|..++++....-+-..+......++.+.+.
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g 221 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG 221 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence 99999999999999999998887765555544455555554
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=3.8e-18 Score=166.00 Aligned_cols=286 Identities=14% Similarity=0.063 Sum_probs=219.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+..+++.+.. ..........|..+...|++++|+++|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 389999999999999999999755558889999999999999999998832 2223444445778889999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+ +++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..+|+..+++++..+|++..
T Consensus 127 k-aL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 127 S-SLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred H-HHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 9 999999999999999999999999999999999999999985554 55666666677887799999999999999876
Q ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Q 043837 160 LKKAYFALKNLLKKTK---------------------------------------------------------------- 175 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~---------------------------------------------------------------- 175 (409)
. +..+..++....
T Consensus 205 ~---~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 205 V---LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred H---HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 2 222211111100
Q ss_pred ---------------------------------------------------HHhhHHhcCCHHHHHHHHHHHHccCCCC-
Q 043837 176 ---------------------------------------------------SAEDNVSKGKLRVAVEDFKAALALDPNH- 203 (409)
Q Consensus 176 ---------------------------------------------------~~~~~~~~~~~~~A~~~~~~al~~~~~~- 203 (409)
.|..++..++.++|+.+|.+++.-.|..
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 1222222366777777777776644321
Q ss_pred c-cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---------------hhcHHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837 204 T-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN---------------EELIEALVQRGEAKLLTEDWEGAVEDLKS 267 (409)
Q Consensus 204 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 267 (409)
. .........|-.+|+..+++++|..++++..... |+..++...++.++...|++.+|.+.+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 0023334667788888899999999998888743 34577888888888999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 268 AAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 268 al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
.+...|.|..++..++.++...+.
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCC
Confidence 999999998888888888776665
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=2.2e-21 Score=169.85 Aligned_cols=255 Identities=22% Similarity=0.228 Sum_probs=120.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH---HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHH
Q 043837 16 EADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL---LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKA 92 (409)
Q Consensus 16 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~ 92 (409)
+..|. ...+.+|.+++..|++++|+..+.+.+... .....+...|......++++.|+..|++ ++..++.++..
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~-l~~~~~~~~~~ 80 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEK-LLASDKANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 44566 333477999999999999999997665543 3334444566677788999999999999 78888888888
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD--PEHSELKKAYFALKNL 170 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~l~~~ 170 (409)
+..++.+ ...+++++|+..+.++.+..+ ++..+.....++...++++++...++++.... +.+.. .|..++.+
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~a~~ 155 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSAR---FWLALAEI 155 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HH---HHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHH---HHHHHHHH
Confidence 8888888 799999999999999988765 46777788888999999999999999977654 45555 78888888
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837 171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE 250 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 250 (409)
+... |++++|+..|+++++++|+ +..+...++.++...|+++++...+.......|+++..+..+|.
T Consensus 156 ~~~~---------G~~~~A~~~~~~al~~~P~----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 156 YEQL---------GDPDKALRDYRKALELDPD----DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp HHHC---------CHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred HHHc---------CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 8877 9999999999999999999 67799999999999999999999999998888999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 251 AKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 251 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
++..+|++++|+.+|+++++.+|+|+.+...++.+....++
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred Hhccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999988776665
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.8e-18 Score=140.62 Aligned_cols=261 Identities=16% Similarity=0.173 Sum_probs=222.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCchHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-----LLQAQSTFDSALKLYDSGEYTKPLE 76 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~A~~ 76 (409)
.+.++|++.|..+++.+|...++++.+|+++.+.|..+.|+..-+..+.. .......++.|..++..|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 46789999999999999999999999999999999999999998887763 3456677889999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN-----LEALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
.|.. +......-..+.-.+..+|....+|++|++..++..++.+.. +..|..++..+....+.+.|+..+.+++
T Consensus 129 ~f~~-L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQ-LVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHH-HhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9987 444444557788899999999999999999999999988764 3356788888888999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
+.+|++.. +-..+|.+.... |+|+.|++.++.+++.+|+. .+.+...+..||..+|+.++.+..+
T Consensus 208 qa~~~cvR---Asi~lG~v~~~~---------g~y~~AV~~~e~v~eQn~~y---l~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 208 QADKKCVR---ASIILGRVELAK---------GDYQKAVEALERVLEQNPEY---LSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhCcccee---hhhhhhHHHHhc---------cchHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999887 777788887777 99999999999999999984 6778889999999999999999999
Q ss_pred HHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837 232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 232 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 279 (409)
.++++..+. +.+...++..-....-.+.|..++.+-+...|+-.-..
T Consensus 273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 999988764 45556667777777778888999988899888854433
No 50
>PLN02789 farnesyltranstransferase
Probab=99.85 E-value=1.5e-18 Score=151.57 Aligned_cols=212 Identities=16% Similarity=0.102 Sum_probs=174.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
+++++|+..+.++|+++|++..+|..++.++..++. ++++++..+++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~--------------------------------~l~eeL~~~~~- 97 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA--------------------------------DLEEELDFAED- 97 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch--------------------------------hHHHHHHHHHH-
Confidence 456677777777777777777777777776654431 35677777777
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDY--ASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
++..+|.+..+|..++.++...++. ++++.++.++++.+|.+..+|..++.++...+++++|++++.++++.+|.+..
T Consensus 98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 8899999999999999999999874 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEAL 235 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al 235 (409)
+|...+.+...+..-.. .....++++.+..++|.++|+ +..+|..++.++.. +++..+|+..+.+++
T Consensus 178 ---AW~~R~~vl~~~~~l~~--~~~~~e~el~y~~~aI~~~P~----N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 178 ---AWNQRYFVITRSPLLGG--LEAMRDSELKYTIDAILANPR----NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred ---HHHHHHHHHHhcccccc--ccccHHHHHHHHHHHHHhCCC----CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 88888887654311000 001245788999999999999 56699999999988 456678999999999
Q ss_pred hcChhcHHHHHHHHHHHHhc
Q 043837 236 NINEELIEALVQRGEAKLLT 255 (409)
Q Consensus 236 ~~~p~~~~~~~~la~~~~~~ 255 (409)
...|+++.++..++.+|...
T Consensus 249 ~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccCCcHHHHHHHHHHHHhh
Confidence 99999999999999999863
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=3.2e-18 Score=145.94 Aligned_cols=188 Identities=21% Similarity=0.195 Sum_probs=169.1
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l 167 (409)
..+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+.. .+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---VLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHH
Confidence 347889999999999999999999999999999999999999999999999999999999999999999887 88888
Q ss_pred HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHH
Q 043837 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQ 247 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (409)
+.++... |++++|+..+.+++...+.. . ....+..+|.++...|++++|...+.+++..+|+++.++..
T Consensus 106 ~~~~~~~---------g~~~~A~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 106 GTFLCQQ---------GKYEQAMQQFEQAIEDPLYP-Q-PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHHHHc---------ccHHHHHHHHHHHHhccccc-c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 8888777 99999999999999854321 1 56688999999999999999999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 248 RGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 248 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
++.++...|++++|+..++++++..|.++.....+..+....
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999888777666555554443
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.7e-18 Score=153.33 Aligned_cols=279 Identities=20% Similarity=0.160 Sum_probs=229.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH-HH-HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837 20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-QS-TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKV 97 (409)
Q Consensus 20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a 97 (409)
++++.....+..+...+++.+-.......+...+-. .. .+..| +++..|+..+-..+-.+ +....|..+..|+..|
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~-LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHK-LVDLYPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHH-HHHhCCCCCcchhhHH
Confidence 456777778888888888888777777776643221 11 22333 67777777766666666 7788899999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837 98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177 (409)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 177 (409)
..|+..+++.+|..+|.++..++|....+|...|.++...++.++|+.+|..|-++.|.... -...+|.-+..+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl---P~LYlgmey~~t--- 393 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL---PSLYLGMEYMRT--- 393 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc---hHHHHHHHHHHh---
Confidence 99999999999999999999999999999999999999999999999999999999888766 667777777777
Q ss_pred hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-------hcHHHHHHHHH
Q 043837 178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE-------ELIEALVQRGE 250 (409)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~ 250 (409)
++++.|..+|.+|+.+.|. .+.++..+|.+.+..+.|.+|+.+|+.++..-+ .....+.++|.
T Consensus 394 ------~n~kLAe~Ff~~A~ai~P~----Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 394 ------NNLKLAEKFFKQALAIAPS----DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred ------ccHHHHHHHHHHHHhcCCC----cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 9999999999999999999 556999999999999999999999999994322 24567899999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch-h-hhhhhhcccccC-CHHHHHHHH
Q 043837 251 AKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR-K-DWYKILGVSKTA-SISEIKRAY 316 (409)
Q Consensus 251 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-~-~~~~~l~~~~~~-~~~e~~~~y 316 (409)
++.+++.+++|+.++++++.+.|.+..+...++.++..++.... . -+.+.|.+.++. ...++.+..
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987665 2 356788888877 445554443
No 53
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=6.9e-18 Score=147.46 Aligned_cols=206 Identities=13% Similarity=0.039 Sum_probs=186.4
Q ss_pred HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCh--HH
Q 043837 66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADH--DV 142 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~ 142 (409)
...+.+++|+..+.+ ++..+|.+..+|..++.++..++ ++++++..+.++++.+|++..+|+.++.++..+++. ++
T Consensus 48 ~~~e~serAL~lt~~-aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTAD-VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHH-HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 346788999999999 99999999999999999999998 689999999999999999999999999999999874 78
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-
Q 043837 143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL- 221 (409)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~- 221 (409)
++.++.++++.+|++.. +|...+.++..+ ++++++++++.++|+.+|. +..+|..++.++...
T Consensus 127 el~~~~kal~~dpkNy~---AW~~R~w~l~~l---------~~~~eeL~~~~~~I~~d~~----N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 127 ELEFTRKILSLDAKNYH---AWSHRQWVLRTL---------GGWEDELEYCHQLLEEDVR----NNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHHHHhCcccHH---HHHHHHHHHHHh---------hhHHHHHHHHHHHHHHCCC----chhHHHHHHHHHHhcc
Confidence 89999999999999999 999999999988 9999999999999999999 777999999998776
Q ss_pred --CCh----hHHHHHHHHHHhcChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 222 --GRG----KDALSSCTEALNINEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 222 --~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
+.+ ++++.+..++|.++|++..+|..++.++.. +++..+|++.+.+++...|++..+...|..+...
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 333 478889999999999999999999999988 4567889999999999999999888888877653
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=159.46 Aligned_cols=242 Identities=18% Similarity=0.155 Sum_probs=193.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|+..+|+-.|+.++..+|.++++|..||.+....++-..|+..+.+.+. ++........+|+.+...|.-.+|+.++.+
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~ 378 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDK 378 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5678899999999999999999999999999999998888888888888 455667778889999999988999999988
Q ss_pred HHHhhCCCcHHHHHH-------HHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 81 VVLVFSPACSKAKLL-------KVKLLLAAKDYASAISETGYLLKEDE--NNLEALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~-------~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
+ +...|........ ..........+..-.+.|..+....| .+++++..||.+|...++|++|+.+|+.||
T Consensus 379 W-i~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL 457 (579)
T KOG1125|consen 379 W-IRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL 457 (579)
T ss_pred H-HHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence 4 4444332111110 00011122234455667777777778 688999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
...|++.. .|..||.++..- .+..+||..|++|+++.|. .+.+++|+|.+++.+|.|++|+++|
T Consensus 458 ~v~Pnd~~---lWNRLGAtLAN~---------~~s~EAIsAY~rALqLqP~----yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 458 QVKPNDYL---LWNRLGATLANG---------NRSEEAISAYNRALQLQPG----YVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hcCCchHH---HHHHhhHHhcCC---------cccHHHHHHHHHHHhcCCC----eeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999 999999999877 8999999999999999999 7889999999999999999999999
Q ss_pred HHHHhcChhc----------HHHHHHHHHHHHhccCHHH
Q 043837 232 TEALNINEEL----------IEALVQRGEAKLLTEDWEG 260 (409)
Q Consensus 232 ~~al~~~p~~----------~~~~~~la~~~~~~~~~~~ 260 (409)
-.||.+.+.. ..+|..|=.++...++.+-
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 9999886541 2355554455555555553
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=8.5e-18 Score=151.12 Aligned_cols=267 Identities=15% Similarity=0.032 Sum_probs=195.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
|+...|...+.++++.+|++.+.|+....+.....+++.|...+.++.........++..+.....+++.++|+.++++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe- 676 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE- 676 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH-
Confidence 5667788888888888888888888888888888888888888877777777777777777777788899999999988
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
+++..|.....|+.+|.++.++++.+.|...|...++..|..+..|..++.+-...|....|...++++...+|++..
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~-- 754 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL-- 754 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch--
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
.|.......... |+.+.|.....+||+-+|++ ..+|..--...-.-++-.. ...|++....+
T Consensus 755 -lwle~Ir~ElR~---------gn~~~a~~lmakALQecp~s----g~LWaEaI~le~~~~rkTk----s~DALkkce~d 816 (913)
T KOG0495|consen 755 -LWLESIRMELRA---------GNKEQAELLMAKALQECPSS----GLLWAEAIWLEPRPQRKTK----SIDALKKCEHD 816 (913)
T ss_pred -hHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCcc----chhHHHHHHhccCcccchH----HHHHHHhccCC
Confidence 666666666555 99999999999999999884 2233222222111222111 22222333344
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
+.+++..|.++....+++.|.++|.++++.+|++.+++..+-+.+...
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRH 864 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHh
Confidence 444555555555555555555555555555555555444444444333
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=3.8e-17 Score=149.54 Aligned_cols=248 Identities=13% Similarity=0.093 Sum_probs=150.1
Q ss_pred HHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhCCCchHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHc
Q 043837 26 FHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDS-ALKLYDSGEYTKPLEYIDKVVLVFSPACSK-AKLLKVKLLLAA 103 (409)
Q Consensus 26 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~-~~~~~a~~~~~~ 103 (409)
+..|.+....|+++.|.......-.........+.. +......|+++.|..++.+ +.+.+|+... .....+.++...
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~-A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLER-AAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHC
Confidence 344445555555555554444333321111222222 3333555555555555555 4444444432 222335555555
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH---------------------
Q 043837 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK--------------------- 162 (409)
Q Consensus 104 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------------------- 162 (409)
|++++|+..++++++.+|+++.++..++.+|...|++++|+..+.+..+..+.+.....
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 55555555555555555555555555555555555555555555554443332221100
Q ss_pred ------------------HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 163 ------------------AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 163 ------------------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
++..+ +..+...|+.++|...++++++..|+ ..+....+. ...++.
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~---------A~~l~~~g~~~~A~~~L~~~l~~~~~-----~~l~~l~~~--l~~~~~ 310 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAM---------AEHLIECDDHDTAQQIILDGLKRQYD-----ERLVLLIPR--LKTNNP 310 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHH---------HHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHhh--ccCCCh
Confidence 33333 33444559999999999999996554 223333333 345899
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
+++++.+++.++.+|+++..+..+|.++...++|++|.++|+++++..|++.. ...+..+.....+
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~ 376 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK 376 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999765 3356666665554
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=150.28 Aligned_cols=238 Identities=14% Similarity=0.136 Sum_probs=217.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
||-+.+|.+.++.+|+..| .++.+..++++|.+..+...|+..+.+.+... .+.......|..+-..+++++|+++|+
T Consensus 236 Lgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK 314 (478)
T ss_pred hcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence 5778999999999999987 47888999999999999999999999988854 445556778888889999999999998
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
. +++.+|.++++.-.+|.-|+-.++.+-|+.+|++++++.-.+++.+.++|.|++..++++-++..|.+++....+...
T Consensus 315 ~-vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~ 393 (478)
T KOG1129|consen 315 L-VLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ 393 (478)
T ss_pred H-HHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999998776666
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
...+|++++.+.... |++..|..+|+-++..+++ ..+++.|+|.+-.+.|+.++|..+++.+-.+.|
T Consensus 394 aaDvWYNlg~vaV~i---------GD~nlA~rcfrlaL~~d~~----h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTI---------GDFNLAKRCFRLALTSDAQ----HGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhhhhhccceeEEec---------cchHHHHHHHHHHhccCcc----hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 777999999998888 9999999999999999999 788999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHH
Q 043837 240 ELIEALVQRGEAKL 253 (409)
Q Consensus 240 ~~~~~~~~la~~~~ 253 (409)
+-.+..++++.+-.
T Consensus 461 ~m~E~~~Nl~~~s~ 474 (478)
T KOG1129|consen 461 DMAEVTTNLQFMSV 474 (478)
T ss_pred cccccccceeEEee
Confidence 88877777665433
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=1e-17 Score=146.85 Aligned_cols=232 Identities=19% Similarity=0.142 Sum_probs=180.8
Q ss_pred ChHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837 3 HYSEALDDLNTAIEAD---PT-LSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEY 77 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 77 (409)
+.+.++..+.++|... |. .+..|+.+|.++...|++++|...+.+++.. +.....++..|..+...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678999999999743 33 4778999999999999999999999999884 44567888999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837 78 IDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157 (409)
Q Consensus 78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 157 (409)
|++ +++++|++..++.++|.++...|++++|+..++++++++|+++.....+ .+....+++++|+..+.+++...+..
T Consensus 121 ~~~-Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 121 FDS-VLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 999 8999999999999999999999999999999999999999987432222 23456788999999998877554332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHH--HHHHHHHHH----ccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRV--AVEDFKAAL----ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
.. .+ +.+...+ +++.+ ++..+.+.+ ++.|. ...+|+++|.++..+|++++|+.+|
T Consensus 199 ~~---~~---~~~~~~l---------g~~~~~~~~~~~~~~~~~~~~l~~~----~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 199 QW---GW---NIVEFYL---------GKISEETLMERLKAGATDNTELAER----LCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred cc---HH---HHHHHHc---------cCCCHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 21 11 2222223 54433 333333333 33444 6779999999999999999999999
Q ss_pred HHHHhcCh-hcHHHHHHHHHHHHhc
Q 043837 232 TEALNINE-ELIEALVQRGEAKLLT 255 (409)
Q Consensus 232 ~~al~~~p-~~~~~~~~la~~~~~~ 255 (409)
+++++.+| +..+..+.+..+....
T Consensus 260 ~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 260 KLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH
Confidence 99999996 6666666555554443
No 59
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=2.6e-16 Score=141.76 Aligned_cols=257 Identities=16% Similarity=0.133 Sum_probs=233.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQST-FDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
+.++-|...|..+|+..|.....|...+..--.-|..+.-.+.+++++...+.+... +..|......|+...|..++..
T Consensus 530 ~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 530 PAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred chHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 346778899999999999999999999998888899999889999998887766554 4566777888999999999998
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
+.+.+|++.++|+....+.....+++.|...|.++....|. ..+|+.-+.....+++.++|+..++.+++..|+...
T Consensus 610 -af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K- 686 (913)
T KOG0495|consen 610 -AFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK- 686 (913)
T ss_pred -HHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH-
Confidence 89999999999999999999999999999999999987775 678888899999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
.|..+|.++..+ ++.+.|...|...++..|. ...+|..++.+--+.|....|...++++.-.+|.
T Consensus 687 --l~lmlGQi~e~~---------~~ie~aR~aY~~G~k~cP~----~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 687 --LWLMLGQIEEQM---------ENIEMAREAYLQGTKKCPN----SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred --HHHHHhHHHHHH---------HHHHHHHHHHHhccccCCC----CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 999999999999 9999999999999999999 6669999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 276 (409)
+...|......-+..|+.+.|.....+|++-.|++.
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999888764
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-16 Score=135.63 Aligned_cols=268 Identities=16% Similarity=0.067 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 043837 6 EALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLV 84 (409)
Q Consensus 6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 84 (409)
.+..++-.-...-|+|...+..+|.|+...|++.+|+..+++.... +......=.-|..+-..|++++--.+-.. +..
T Consensus 216 ~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~-Lf~ 294 (564)
T KOG1174|consen 216 SQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY-LFA 294 (564)
T ss_pred hhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH-HHh
Confidence 3455566666778999999999999999999999999999888763 33444444456667778898887777766 677
Q ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837 85 FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164 (409)
Q Consensus 85 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 164 (409)
.......-|+.-+...+..+++..|+.+-+++|+.+|.+..++...|.++...++.++|+-.|+.|..+.|-... .|
T Consensus 295 ~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---~Y 371 (564)
T KOG1174|consen 295 KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---IY 371 (564)
T ss_pred hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH---HH
Confidence 776778888888999999999999999999999999999999999999999999999999999999999998888 77
Q ss_pred HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH-HHHHH-cCChhHHHHHHHHHHhcChhcH
Q 043837 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC-KVLVK-LGRGKDALSSCTEALNINEELI 242 (409)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la-~~~~~-~~~~~~A~~~~~~al~~~p~~~ 242 (409)
.-+-.+|... +++.+|...-+.+++.-|. ++..+..+| .++.. ----++|.+.+++++.+.|...
T Consensus 372 ~GL~hsYLA~---------~~~kEA~~~An~~~~~~~~----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 372 RGLFHSYLAQ---------KRFKEANALANWTIRLFQN----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred HHHHHHHHhh---------chHHHHHHHHHHHHHHhhc----chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 7787777777 9999999999999999999 677888886 44443 3345899999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
.+...+|.++...|.++.++..+++.+...|+. .+...|+.+..+.+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE 486 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999885 455566666665554
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=8.9e-17 Score=147.91 Aligned_cols=257 Identities=14% Similarity=0.010 Sum_probs=204.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLS-EAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYI 78 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~ 78 (409)
+|+++.|..++.++.+..|++. .+....+.++...|+++.|...+...+... .........+..+...|+|++|++.+
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l 210 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDII 210 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4899999999999999999885 567778999999999999999999988864 34566777888899999999999999
Q ss_pred HHHHHhhCCCcHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 79 DKVVLVFSPACSKAK----LLKVKLLLAAKDYASAISETGYLLKEDE----NNLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 79 ~~~~~~~~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
.+ ..+..+.++..+ .....-++..+..+++.+.+.++.+..| +++.++..++..+...|++++|++.++++
T Consensus 211 ~~-l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 211 DN-MAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred HH-HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 88 665533333322 1222222445555666778888888887 58999999999999999999999999999
Q ss_pred HccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH
Q 043837 151 LRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS 230 (409)
Q Consensus 151 l~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 230 (409)
++..|++.... +..+. .+ ..+..++...++..++++++..|+++ ...++..+|++++..|+|++|.++
T Consensus 290 l~~~pd~~~~~--~~~l~-~~-------~~l~~~~~~~~~~~~e~~lk~~p~~~--~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 290 LKKLGDDRAIS--LPLCL-PI-------PRLKPEDNEKLEKLIEKQAKNVDDKP--KCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred HhhCCCcccch--hHHHH-Hh-------hhcCCCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999987511 01110 00 11223788999999999999999943 127889999999999999999999
Q ss_pred HH--HHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 231 CT--EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 231 ~~--~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
|+ .+++..|+... +..+|.++.++|+.++|.+++++++..
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 57788887666 559999999999999999999998764
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.79 E-value=7.6e-17 Score=147.86 Aligned_cols=257 Identities=23% Similarity=0.192 Sum_probs=212.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
..++++.+++|++.+|+|+.+.+.++.-|..+++.+.|...+.+.+.. -.....+.-.|+.+-.++++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~- 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA- 538 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH-
Confidence 467999999999999999999999999999999999999999998885 45677888899999999999999999988
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----------------------------------------
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE---------------------------------------- 121 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------------------------------------- 121 (409)
++...|.+.........+-...++.++|+..+...+.+-.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 7777777655555555555555665555555444432211
Q ss_pred ------------------------CC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837 122 ------------------------NN-----LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172 (409)
Q Consensus 122 ------------------------~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 172 (409)
+. ...|...+..+...+..++|..++.++-.++|.... .|+..|.++.
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~---~~~~~G~~~~ 695 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS---VYYLRGLLLE 695 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH---HHHHhhHHHH
Confidence 00 114567778888888888898899999888888887 8888888888
Q ss_pred HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH--HHHHHHhcChhcHHHHHHHHH
Q 043837 173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS--SCTEALNINEELIEALVQRGE 250 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~ 250 (409)
.. |++.+|...|..++.++|+ .+.....+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.
T Consensus 696 ~~---------~~~~EA~~af~~Al~ldP~----hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 696 VK---------GQLEEAKEAFLVALALDPD----HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred HH---------HhhHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 77 9999999999999999999 45588899999999998888877 999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 251 AKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 251 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
++..+|+.++|.++|+.++++.+.+|-
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999887753
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.79 E-value=9.7e-17 Score=146.33 Aligned_cols=244 Identities=18% Similarity=0.172 Sum_probs=202.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--------HHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHhh---
Q 043837 18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--------LQAQSTF-DSALKLYDSGEYTKPLEYIDKVVLVF--- 85 (409)
Q Consensus 18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~-~~a~~~~~~~~~~~A~~~~~~~~~~~--- 85 (409)
+|....+...++..|..+|+++.|...+..++... ....... ..|..+...+++.+|+.+|.+ ++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~-AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE-ALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHH
Confidence 67777888889999999999999999999998872 3333333 488899999999999999998 4433
Q ss_pred -----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 86 -----SPACSKAKLLKVKLLLAAKDYASAISETGYLLKED--------ENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 86 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+|..+.++.++|..|...|++.+|..++++++++. |.-...+..++.++...+++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667889999999999999999999999999863 22344678999999999999999999999988
Q ss_pred c-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC----CccchHHHHHHHHHHHHHcCC
Q 043837 153 L-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN----HTAHNVHLYLGLCKVLVKLGR 223 (409)
Q Consensus 153 ~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~la~~~~~~~~ 223 (409)
+ -++++.+...+.+++.++... |++++|.+.+++|+.+... ........+.++|..+.+.++
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~---------gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKM---------GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHh---------cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 5 345556677888888888888 9999999999999986521 111146678899999999999
Q ss_pred hhHHHHHHHHHHhc-------ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 224 GKDALSSCTEALNI-------NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 224 ~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
+.+|...|.+++.+ .|+....+.+|+.+|..+|+++.|+++.++++..
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999998865 4566788999999999999999999999998853
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=2.8e-16 Score=143.84 Aligned_cols=250 Identities=13% Similarity=0.097 Sum_probs=205.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH--HHHHHHHHHHhCCCchHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ--STFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
|+|++|.+.+.++-+..+...-.+...+.+..+.|+++.|...+.++....+... .....+..+...|++++|+..++
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8999999888876665443344444446676999999999999999988655442 22345788899999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----------------------------------------
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE---------------------------------------- 119 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------------------------- 119 (409)
+ +.+.+|+++.++..++.+|...|+|++|++.+.++.+.
T Consensus 178 ~-~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 178 K-LLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred H-HHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 9 89999999999999999999999999999666555432
Q ss_pred --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Q 043837 120 --DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAAL 197 (409)
Q Consensus 120 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 197 (409)
.|+++.++..++..+...|+.++|...++++++..| +.. .....+.+ ..++.++++..+++.+
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~---l~~l~~~l-----------~~~~~~~al~~~e~~l 321 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER---LVLLIPRL-----------KTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH---HHHHHhhc-----------cCCChHHHHHHHHHHH
Confidence 244666778889999999999999999999999544 444 22222222 2289999999999999
Q ss_pred ccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 198 ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 198 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
+..|+ ++..+..+|.++...++|++|.++|+++++..|++.. +..++.++..+|+.++|..+|++++.+.
T Consensus 322 k~~P~----~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 322 KQHGD----TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999 6779999999999999999999999999999998654 6689999999999999999999998764
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=5e-16 Score=151.38 Aligned_cols=206 Identities=11% Similarity=0.034 Sum_probs=168.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q 043837 61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE------NNLEALLHRGRAY 134 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~ 134 (409)
.-..+...+++.+++..|+.+-....|-...+....|..|+..++.++|+.+|.+++.-.| ........|-.+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 3344555688888888887622223344567788889999999999999999999987653 2233346778888
Q ss_pred HhcCChHHHHHHHHHHHccCC------------CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 135 YYLADHDVAQRHFQKGLRLDP------------EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
...+++++|..++++..+..| .+++.......++.++... |++.+|.+.+++.+...|.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~---------gdl~~Ae~~le~l~~~aP~ 448 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL---------NDLPTAQKKLEDLSSTAPA 448 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Confidence 999999999999999887555 2333334556666666666 9999999999999999999
Q ss_pred CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837 203 HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 203 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 279 (409)
+..++..+|.++...|.+..|+..++.++.++|++..+...++.++..+++|.+|......+++..|+++.+.
T Consensus 449 ----n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 449 ----NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999998654
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.78 E-value=1.1e-16 Score=136.54 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS---KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---AL 127 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 127 (409)
.....+..+..++..|++++|+..+++ ++..+|.++ .+++.+|.++...+++++|+..++++++.+|+++. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEA-LESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345667778888888888888888888 777777765 57788888888889999999999999888887665 67
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837 128 LHRGRAYYYL--------ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL 199 (409)
Q Consensus 128 ~~l~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 199 (409)
+.+|.++... +++++|++.+++++..+|++.....++..+......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~-------------------------- 164 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR-------------------------- 164 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH--------------------------
Confidence 8888888876 778888888888888888887633333333222211
Q ss_pred CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
.......+|.++...|++.+|+..+++++...|+ .+.+++.++.++..+|++++|..+++......|
T Consensus 165 -------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 -------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1123457788888999999999999999988665 457889999999999999999998877766655
No 67
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9e-19 Score=148.62 Aligned_cols=66 Identities=58% Similarity=0.876 Sum_probs=61.9
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
...+|.+|+|.++++..||+++||+++++|||||++. +.++|++|.+|||+|+||+||+.||.+.+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~yD~~g~ 68 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIYDQYGE 68 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence 4578999999999999999999999999999999987 77899999999999999999999999664
No 68
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-18 Score=144.59 Aligned_cols=69 Identities=57% Similarity=0.906 Sum_probs=65.1
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
...|+|++|+|+++++.+|||+|||+||+++|||+++++ +.|..+|++|+.||++|+||++|+.||+..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 357999999999999999999999999999999999988 689999999999999999999999999954
No 69
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=3.8e-17 Score=134.81 Aligned_cols=124 Identities=26% Similarity=0.341 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHH
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEAL 245 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 245 (409)
..+.......++..+++.++|.+|+..|.+||+++|. ++.+|.+++.+|.++|+++.|++.|+.+|.++|.+.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence 3444555567788889999999999999999999999 777999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Q 043837 246 VQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK 293 (409)
Q Consensus 246 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 293 (409)
.++|.+|..+|++++|++.|+++|+++|++...+..|..+...++..+
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999998887644
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.3e-15 Score=142.05 Aligned_cols=259 Identities=15% Similarity=0.160 Sum_probs=183.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
+|+.++|+..+-.|-.++|.+.+.|..++....++|++..|.-++.+++.. +......+.++..+-+.|++..|...|.
T Consensus 186 rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 186 RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 366777777777777777777777777777777777777777777777774 3345555667777777777777777777
Q ss_pred HHHHhhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 80 KVVLVFSPAC-----SKAKLLKVKLLLAAKDYASAISETGYLLKED--ENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 80 ~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+ +....|.. ...-...+..+...++-+.|++.+..++... ....+-+..++.++.....++.|+..+.....
T Consensus 266 ~-l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 266 Q-LLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred H-HHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 7 66666622 1222334556666666677777777776622 22333455666666666666666655544332
Q ss_pred ----------------------cC--CC-------------------------------------cHHHHHHHHHHHHHH
Q 043837 153 ----------------------LD--PE-------------------------------------HSELKKAYFALKNLL 171 (409)
Q Consensus 153 ----------------------~~--p~-------------------------------------~~~~~~~~~~l~~~~ 171 (409)
+. |+ ..+....+..+
T Consensus 345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~---- 420 (895)
T KOG2076|consen 345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDL---- 420 (895)
T ss_pred cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHH----
Confidence 00 00 00011133333
Q ss_pred HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHH
Q 043837 172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEA 251 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 251 (409)
+..+.+.|++.+|+.++..++...+.. +..+|+.+|.||..++.+++|+.+|++++.+.|++.++...++.+
T Consensus 421 -----a~al~~~~~~~~Al~~l~~i~~~~~~~---~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 421 -----ADALTNIGKYKEALRLLSPITNREGYQ---NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL 492 (895)
T ss_pred -----HHHHHhcccHHHHHHHHHHHhcCcccc---chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence 445555599999999999999887764 578999999999999999999999999999999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHhhC
Q 043837 252 KLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 252 ~~~~~~~~~A~~~~~~al~~~ 272 (409)
+..+|+.++|++.++....-+
T Consensus 493 ~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 493 YQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999877433
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.1e-14 Score=120.98 Aligned_cols=225 Identities=20% Similarity=0.188 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-----EALLH 129 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~ 129 (409)
....|..++.++-..+.++|+..|-. +++.+|...++.+.+|..+.+.|+.+.||..-+..++ .|+.+ -+...
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e-~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~q 112 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLE-MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQ 112 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHH-HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHH
Confidence 44567788888888888888888888 7888888888888888888888888888887666554 45432 26678
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc-cchH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT-AHNV 208 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~ 208 (409)
||.-|...|-++.|...|........--.. ++..+..+|... .+|++||+.-++..++.+..- ...+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~---AlqqLl~IYQ~t---------reW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEG---ALQQLLNIYQAT---------REWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHH---HHHHHHHHHHHh---------hHHHHHHHHHHHHHHcCCccchhHHH
Confidence 888888888888888888887664433334 677777777777 888888888888888777532 2245
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHH
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD-MNIREALMRAEK 287 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~ 287 (409)
..|..++..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..|+.
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888888888888888888888888888888888888888888875 556677777777
Q ss_pred HHhhcc
Q 043837 288 ALKMSK 293 (409)
Q Consensus 288 ~~~~~~ 293 (409)
.+.+..
T Consensus 261 ~lg~~~ 266 (389)
T COG2956 261 QLGKPA 266 (389)
T ss_pred HhCCHH
Confidence 666543
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.73 E-value=5.1e-15 Score=136.05 Aligned_cols=286 Identities=16% Similarity=0.060 Sum_probs=218.4
Q ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHH-HHHHHcCChHHHhHHHHHHHHHHH------HHHHHHHHHHHHHh-------
Q 043837 4 YSEALDDLNTAIEAD--PTLSEAYFHRG-SVLRQLCRVKARNSVAEKELSQLL------QAQSTFDSALKLYD------- 67 (409)
Q Consensus 4 ~~~A~~~~~~al~~~--p~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~a~~~~~------- 67 (409)
-..|+..++..+... |.++..+...+ .|+...+..++++.++.+++.... ....++..++.|-.
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 345777777777766 66665555544 455667788888888888777332 23334444444421
Q ss_pred ----CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcCChHH
Q 043837 68 ----SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-DENNLEALLHRGRAYYYLADHDV 142 (409)
Q Consensus 68 ----~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~ 142 (409)
.-...+++..+++ +++.+|+++.+.+.++.-|...++.+.|+...++++++ ..+++.+|..++.++...+++..
T Consensus 453 ~seR~~~h~kslqale~-av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEE-AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred hHHHHHHHHHHHHHHHH-HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 1235688899988 89999999999999999999999999999999999999 45678899999999999999999
Q ss_pred HHHHHHHHHccCCCcHHHH------------------------HHHHHHHHHHH--------------------------
Q 043837 143 AQRHFQKGLRLDPEHSELK------------------------KAYFALKNLLK-------------------------- 172 (409)
Q Consensus 143 A~~~~~~al~~~p~~~~~~------------------------~~~~~l~~~~~-------------------------- 172 (409)
|+.....++.-.|+|.... ..|...-.+..
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 9999999998777732100 00110000000
Q ss_pred -----------------------------------------HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH
Q 043837 173 -----------------------------------------KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY 211 (409)
Q Consensus 173 -----------------------------------------~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 211 (409)
.+..+..+...++.++|..++.++-.++|. .+..|
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l----~~~~~ 687 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL----SASVY 687 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh----hHHHH
Confidence 001122333336777788888888888887 78899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 212 LGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE--DLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 212 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
+..|.++...|++.+|...|..++.++|+++.+...+|.++.+.|+..-|.. .+..+++++|.++++|..++.+.+.+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998887777 99999999999999999999998888
Q ss_pred hhcch
Q 043837 290 KMSKR 294 (409)
Q Consensus 290 ~~~~~ 294 (409)
...+.
T Consensus 768 Gd~~~ 772 (799)
T KOG4162|consen 768 GDSKQ 772 (799)
T ss_pred cchHH
Confidence 77554
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=2.8e-15 Score=136.84 Aligned_cols=226 Identities=17% Similarity=0.169 Sum_probs=187.4
Q ss_pred CCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH---------HHHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEA--------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL---------QAQSTFDSAL 63 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---------~~~~~~~~a~ 63 (409)
.|+|+.|+..|+++++. .|.-......+|.+|..++++.+|...|.+++.... .+....++|.
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 37999999999999998 666666667799999999999999999999988543 4566788899
Q ss_pred HHHhCCCchHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--------CCHHHH
Q 043837 64 KLYDSGEYTKPLEYIDKVVLVF--------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE--------NNLEAL 127 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~ 127 (409)
.+++.|++.+|..++++ ++.+ .|.-...+..++.++..++++++|+.++++++++.- .-+..+
T Consensus 292 ly~~~GKf~EA~~~~e~-Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCER-ALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHhccCChHHHHHHHHH-HHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 99999999999999988 4433 234466788899999999999999999999998632 335578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccC-----CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc---
Q 043837 128 LHRGRAYYYLADHDVAQRHFQKGLRLD-----PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--- 199 (409)
Q Consensus 128 ~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 199 (409)
.++|.+|..+|++++|.+.+++|+.+. ..+......+..++..+... +++.+|...|.+++.+
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~---------k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL---------KKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh---------cccchHHHHHHHHHHHHHH
Confidence 899999999999999999999999864 22333445777777777777 9999999999988775
Q ss_pred -CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 200 -DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 200 -~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
.|+++. ....+.+||.+|..+|++++|+++.+.++..
T Consensus 442 ~g~~~~~-~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 442 CGPDHPD-VTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hCCCCCc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345544 6778999999999999999999999999854
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=6.6e-14 Score=126.47 Aligned_cols=280 Identities=16% Similarity=0.149 Sum_probs=227.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
++|...++..+++|+..|+..+.+..+|..+..+|+.++|.......+.. ..+...+...++.+-...+|++||++|..
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999998888774 44566778889999999999999999998
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCc
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD---PEH 157 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~ 157 (409)
++...|++..++.-++....++++++-....-.+.+++.|..-..|...+.++...|++..|...++...+.. |+.
T Consensus 101 -Al~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 101 -ALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred -HHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887766544 332
Q ss_pred HHHHH--HHHHHHHHHH-------------------------HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc------
Q 043837 158 SELKK--AYFALKNLLK-------------------------KTKSAEDNVSKGKLRVAVEDFKAALALDPNHT------ 204 (409)
Q Consensus 158 ~~~~~--~~~~l~~~~~-------------------------~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------ 204 (409)
..... .......+.. ...++..+++.+++++|+..|...+..+|++-
T Consensus 180 ~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 180 EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence 22100 0000000000 11134555566888888888887777666541
Q ss_pred --------------------------------------------------------------------------------
Q 043837 205 -------------------------------------------------------------------------------- 204 (409)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (409)
T Consensus 260 ~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~l 339 (700)
T KOG1156|consen 260 EKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFL 339 (700)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHH
Confidence
Q ss_pred ----------------------------cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837 205 ----------------------------AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE 256 (409)
Q Consensus 205 ----------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 256 (409)
....+.++.++.-+...|+++.|..+++.|+...|+.++.+...|+++...|
T Consensus 340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G 419 (700)
T KOG1156|consen 340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAG 419 (700)
T ss_pred HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcC
Confidence 0122445567777888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837 257 DWEGAVEDLKSAAQQSPQDMNIREAL 282 (409)
Q Consensus 257 ~~~~A~~~~~~al~~~p~~~~~~~~l 282 (409)
+.++|..++.++.+++-.|.-+....
T Consensus 420 ~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 420 LLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred ChHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999999999987776655433
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=3.4e-16 Score=121.53 Aligned_cols=99 Identities=21% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE 263 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 263 (409)
|++++|+..|++++.++|. +..++.++|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+.
T Consensus 38 g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred CCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444444 333444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHH
Q 043837 264 DLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 264 ~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
.|++++++.|+++..+..+..+.
T Consensus 114 ~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 114 AFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHhCCCChHHHHHHHHHH
Confidence 44444444444444444444333
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=6.3e-16 Score=120.04 Aligned_cols=120 Identities=18% Similarity=0.105 Sum_probs=88.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH-------HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 043837 110 ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR-------HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS 182 (409)
Q Consensus 110 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 182 (409)
...++++++++|++ ++.+|.++. -.. +|++++.++|.+.. ++..++.++...
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~-------~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~-------- 71 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASW-------QEGDYSRAVIDFSWLVMAQPWSWR---AHIALAGTWMML-------- 71 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHH-------HcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHH--------
Confidence 45778888888774 334444332 122 35566677888777 788888888777
Q ss_pred cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT 255 (409)
Q Consensus 183 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 255 (409)
|++++|+..|.+++.++|+ ++.+++++|.++..+|++++|+..|++++++.|+++..+..++.+...+
T Consensus 72 -g~~~~A~~~y~~Al~l~p~----~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 72 -KEYTTAINFYGHALMLDAS----HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred -hhHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 8888888888888888888 5668888888888888888888888888888888888887777766543
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=3.3e-14 Score=129.37 Aligned_cols=209 Identities=16% Similarity=0.107 Sum_probs=164.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHH
Q 043837 17 ADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKA 92 (409)
Q Consensus 17 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~ 92 (409)
.||+++.++..+|.++...++.+.+...+........ .....+..+..++..|++++|+..+++ ++..+|.+..+
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~-~l~~~P~~~~a 79 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQ-LLDDYPRDLLA 79 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCcHHH
Confidence 3799999999999999999999988666666555332 334566778888999999999999988 78888988877
Q ss_pred HHHHHHHHHHccCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837 93 KLLKVKLLLAAKDY----ASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK 168 (409)
Q Consensus 93 ~~~~a~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 168 (409)
+.. +..+...+++ ..+...+......+|....++..+|.++..+|++++|+..+++++.+.|++.. .+..++
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---~~~~la 155 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---AVHAVA 155 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---HHHHHH
Confidence 665 5555555444 34444444433566777777788899999999999999999999999999877 788888
Q ss_pred HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
.++... |++++|+.++.+++...|.++......+..++.++...|++++|+..+++++...|
T Consensus 156 ~i~~~~---------g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 156 HVLEMQ---------GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHc---------CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 888877 99999999999999988764433445677899999999999999999999876655
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.69 E-value=8.1e-15 Score=119.98 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=126.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Q 043837 97 VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKS 176 (409)
Q Consensus 97 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~ 176 (409)
+-.|+..|+++......++.. +|.. -+...++.++++..+++++..+|++.. .|..++.++...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~---~w~~Lg~~~~~~-- 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSE---QWALLGEYYLWR-- 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHC--
Confidence 446777888777644442221 2211 111356778888889999999999888 888888888877
Q ss_pred HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHH-HHcCC--hhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVL-VKLGR--GKDALSSCTEALNINEELIEALVQRGEAKL 253 (409)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 253 (409)
|++++|+..|++++++.|+ +..++..+|.++ ...|+ +++|...++++++.+|+++.++..+|.++.
T Consensus 87 -------g~~~~A~~a~~~Al~l~P~----~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~ 155 (198)
T PRK10370 87 -------NDYDNALLAYRQALQLRGE----NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAF 155 (198)
T ss_pred -------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 8999999999999999998 677899999875 67777 599999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837 254 LTEDWEGAVEDLKSAAQQSPQDMNIREAL 282 (409)
Q Consensus 254 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l 282 (409)
..|++++|+.++++++++.|.+.+-...+
T Consensus 156 ~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 156 MQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999999999999999998776544444
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=5.2e-15 Score=139.17 Aligned_cols=280 Identities=11% Similarity=-0.007 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ---LLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
..|..+|++|.++||.++++.-..+..|.+..+++.|.......-.. ......+...+..+++.++...|+..+..
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs- 587 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS- 587 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH-
Confidence 34666677777777777666666677777777777665553333221 12234455577778888999999999987
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH--
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE-- 159 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 159 (409)
++..+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|+|.+|+..+...+........
T Consensus 588 ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q 667 (1238)
T KOG1127|consen 588 ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ 667 (1238)
T ss_pred HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999999999999999998888899999999999999999887776543221110
Q ss_pred --HHH------------------------------------------HHHHHHHHHHH---HH-----------------
Q 043837 160 --LKK------------------------------------------AYFALKNLLKK---TK----------------- 175 (409)
Q Consensus 160 --~~~------------------------------------------~~~~l~~~~~~---~~----------------- 175 (409)
... .|..++.+... .+
T Consensus 668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLE 747 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 000 00000000000 00
Q ss_pred ---------------------------------HHhhHHh------c--CCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837 176 ---------------------------------SAEDNVS------K--GKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214 (409)
Q Consensus 176 ---------------------------------~~~~~~~------~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 214 (409)
.+..++. . .+...|+.++.++++++.+ +...|..|
T Consensus 748 ~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an----n~~~WnaL 823 (1238)
T KOG1127|consen 748 KTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN----NEGLWNAL 823 (1238)
T ss_pred hcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc----cHHHHHHH
Confidence 0000000 0 2334678888888888877 66688888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 215 CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 215 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
|.+ ...|++.-|..+|-+++...|.....|.++|.++.+..+++-|...+.++..++|.+...+...+.+-..+.
T Consensus 824 GVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 824 GVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred HHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 877 556788888888888888888888899999999999999999999999999999998877766666655554
No 80
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=126.11 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 4 YSEALDDLNTAIEADPTLSEAYF--HRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
.+.|+++++.++.+.++...... .+..+.....+....+ .... .....++..-.++..+++.++|.+|+..|.+
T Consensus 31 leva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~-e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~- 106 (304)
T KOG0553|consen 31 LEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEI--LTPE-EDKALAESLKNEGNKLMKNKDYQEAVDKYTE- 106 (304)
T ss_pred HHHhHHHHHHHhCcchhhccccccccHHHHHHHhccCcccc--cChH-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-
Confidence 35577777777777665432211 1111222222200000 0000 2344566777889999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
++.++|.++..|.++|.+|.++|.++.|++.++.+|.++|....+|..||.+|+.+|++++|++.|+++|.++|++..
T Consensus 107 AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~-- 184 (304)
T KOG0553|consen 107 AIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES-- 184 (304)
T ss_pred HHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHH
Q 043837 162 KAYFALKNLLKKT 174 (409)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (409)
++.+|..+...+
T Consensus 185 -~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 185 -YKSNLKIAEQKL 196 (304)
T ss_pred -HHHHHHHHHHHh
Confidence 565555554433
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=6.7e-14 Score=127.36 Aligned_cols=264 Identities=12% Similarity=-0.023 Sum_probs=182.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCchHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-----LLQAQSTFDSALKLYDSGEYTKPL 75 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~A~ 75 (409)
.|++++|+..++++++.+|++..++.. +..+...+++..+...+...+.. ..........+..+...|++++|+
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 378889999999999999998877765 66666666655554444444431 112334456777889999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 76 EYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL----EALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 76 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
..+++ ++..+|.++.++..+|.++...|++++|+..+++++...|..+ ..+..++.++...|++++|+..+++++
T Consensus 135 ~~~~~-al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 135 EAARR-ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHH-HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999 8999999999999999999999999999999999999887533 246689999999999999999999998
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
...|..............+......+. .-...+++....... ...+. .. ........+.++...++.++|...+
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~w~~~~~~~~---~~~~~-~~-~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 214 APSAESDPALDLLDAASLLWRLELAGH-VDVGDRWEDLADYAA---WHFPD-HG-LAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred ccccCCChHHHHhhHHHHHHHHHhcCC-CChHHHHHHHHHHHH---hhcCc-cc-chHHHHHHHHHHhcCCCHHHHHHHH
Confidence 776632221111011011111110000 000012222222211 11122 11 2333347888999999999999999
Q ss_pred HHHHhcCh---------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 232 TEALNINE---------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 232 ~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
+.+..... ....+....|.++...|++++|++.+..++.+.
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88765322 235677889999999999999999999999765
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.67 E-value=2.4e-14 Score=129.32 Aligned_cols=250 Identities=16% Similarity=0.133 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 043837 25 YFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA 103 (409)
Q Consensus 25 ~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~ 103 (409)
++..+.-.+..++|...+..+...+.. +...+..-.+++.+...|+-++|..+... .+..++.+.-.|..+|.++...
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~-glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRL-GLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHH-HhccCcccchhHHHHHHHHhhh
Confidence 344444444444444444444444442 22233334444444445555555554444 4444444445555555555555
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhc
Q 043837 104 KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSK 183 (409)
Q Consensus 104 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 183 (409)
.+|++|+.+|+.|+.++|+|...|.-++....++++++-....-.+.+++.|.... .|...+......
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra---~w~~~Avs~~L~--------- 156 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA---SWIGFAVAQHLL--------- 156 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH---HHHHHHHHHHHH---------
Confidence 55555555555555555555555555555555555555554444444555444444 444444444444
Q ss_pred CCHHHHHHHHHHHHccC---CCCc-cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHH
Q 043837 184 GKLRVAVEDFKAALALD---PNHT-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWE 259 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~---~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 259 (409)
|++..|+..++...+.. |+.. .....+......++.+.|.+++|++.+..--..--+........+.++.++++++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 66666666665555433 2210 0122333444555556666666655554433222233444566888999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 260 GAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 260 ~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
+|+..|...+..+|++......+..+.-
T Consensus 237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 9999999999999999888887777763
No 83
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.66 E-value=4e-12 Score=127.79 Aligned_cols=251 Identities=14% Similarity=0.012 Sum_probs=164.3
Q ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPT-LSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYI 78 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~ 78 (409)
|++++|...|.++.+.... +...|..+..+|.+.|++++|...+...... .++...+-.....+.+.|++++|+.+|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 5667777777777665432 4566777777777777777777777666542 123334444455566777777777777
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837 79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE----DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD 154 (409)
Q Consensus 79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 154 (409)
..+....-..+..+|..+...+.+.|++++|.+.+.+.... .|+ ...|..+...|.+.|++++|.+.|+.+.+..
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 76322222234566777777777777777777777777642 343 4566667777777777777777777777654
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 155 -PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 155 -p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
+.+.. .|..+...+... |++++|+..|.+..+. .|+ ...|..+..++.+.|++++|...+
T Consensus 610 i~p~~~---tynsLI~ay~k~---------G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 610 IKGTPE---VYTIAVNSCSQK---------GDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCCChH---HHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 22333 555665555555 7777777777777664 333 446667777777777777777777
Q ss_pred HHHHhcC-hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 232 TEALNIN-EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 232 ~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
.+..+.. +.+..++..+..+|.+.|++++|.+.|+++.+
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7776643 23556677777777777777777777777654
No 84
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.66 E-value=1.5e-12 Score=130.79 Aligned_cols=260 Identities=12% Similarity=0.025 Sum_probs=211.0
Q ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPT-LSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEY 77 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~ 77 (409)
.|++++|...|+++.+.... +...|..+...|.+.|++++|...+...... .++...+......+.+.|++++|..+
T Consensus 485 ~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 37889999999999887543 6788999999999999999999998887653 23344455566677888999999999
Q ss_pred HHHHHHh----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 78 IDKVVLV----FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED-ENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 78 ~~~~~~~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+.+ +.. ..| +..+|..+..+|.+.|++++|++.|+...+.+ +.+...|..+...|.+.|++++|+..|++...
T Consensus 565 f~e-M~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 565 LAE-MKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHH-HHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 998 443 234 46788889999999999999999999999876 45678899999999999999999999999887
Q ss_pred c--CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH
Q 043837 153 L--DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS 230 (409)
Q Consensus 153 ~--~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 230 (409)
. .|+.. .|..+...+... |++++|..++..+.+..... +...|..+..+|.+.|++++|+..
T Consensus 643 ~Gv~PD~~----TynsLI~a~~k~---------G~~eeA~~l~~eM~k~G~~p---d~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 643 KGVKPDEV----FFSALVDVAGHA---------GDLDKAFEILQDARKQGIKL---GTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCCCCHH----HHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5 45533 566666666666 99999999999998754321 466899999999999999999999
Q ss_pred HHHHHhc--ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--CCCcHHHH
Q 043837 231 CTEALNI--NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ--SPQDMNIR 279 (409)
Q Consensus 231 ~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 279 (409)
|++.... .| +...|..+...|.+.|++++|++.|+++... .|+.....
T Consensus 707 f~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 707 YEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9988653 44 5678999999999999999999999988764 46644433
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=7.2e-13 Score=118.67 Aligned_cols=190 Identities=19% Similarity=0.211 Sum_probs=154.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
++|++|++...+++...|++..+....-.++.++++|++|+................|++|.+.|+.+..++|+..++.
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~- 104 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKG- 104 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhc-
Confidence 5799999999999999999999999999999999999999966555444333333348999999999999999999973
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------------------------------CHHHHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-------------------------------NLEALLHR 130 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~~~~~~l 130 (409)
.++.+..+....|.+++++++|++|+..|+.+++.+.+ +.+.+++.
T Consensus 105 ---~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~ 181 (652)
T KOG2376|consen 105 ---LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNT 181 (652)
T ss_pred ---ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHH
Confidence 46667789999999999999999999999998654322 33468999
Q ss_pred HHHHHhcCChHHHHHHHHHHHcc--------CCCcH----HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 131 GRAYYYLADHDVAQRHFQKGLRL--------DPEHS----ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~--------~p~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
+.++...|+|.+|++.+++++.+ +.... ++..+...++.++... |+.++|...|...++
T Consensus 182 Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~---------Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 182 ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ---------GQTAEASSIYVDIIK 252 (652)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHH
Confidence 99999999999999999999432 11111 1334666777777777 999999999999998
Q ss_pred cCCCCc
Q 043837 199 LDPNHT 204 (409)
Q Consensus 199 ~~~~~~ 204 (409)
.+|.+.
T Consensus 253 ~~~~D~ 258 (652)
T KOG2376|consen 253 RNPADE 258 (652)
T ss_pred hcCCCc
Confidence 877654
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.65 E-value=4.4e-14 Score=120.50 Aligned_cols=174 Identities=18% Similarity=0.125 Sum_probs=151.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH--
Q 043837 18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK-- 91 (409)
Q Consensus 18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~-- 91 (409)
++..+..++.+|..+...|++++|...+.+.+...+ ....++..|..++..+++++|+..|++ +++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~-~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR-FIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCcCCCchH
Confidence 445788999999999999999999999999887533 235678899999999999999999999 8888887765
Q ss_pred -HHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHhcCChHHHHH
Q 043837 92 -AKLLKVKLLLAA--------KDYASAISETGYLLKEDENNLEAL-----------------LHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 92 -~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~ 145 (409)
+++.+|.++... +++++|++.+++++..+|++..++ ..+|.+++..|++.+|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 789999999886 889999999999999999986542 367889999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP 201 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 201 (409)
.+++++...|+++....++..++.++..+ |++++|+.+++......|
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~l---------g~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKL---------GLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCC
Confidence 99999999888765556999999999988 999999999888766555
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=1.1e-13 Score=132.82 Aligned_cols=198 Identities=11% Similarity=0.032 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLL 100 (409)
Q Consensus 21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~ 100 (409)
++..+..+-.+....|..++|-......+...........++.. ...++.. .....|.++.++.++|.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~La~i~ 96 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAA-----ALPELLD-----YVRRYPHTELFQVLVARAL 96 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHh-----hHHHHHH-----HHHhccccHHHHHHHHHHH
Confidence 45556666677777888777755554444433332222222211 1222222 2334788899999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 043837 101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN 180 (409)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~ 180 (409)
...|.+++|...++.++++.|++..++..++.++.+++++++|+..+++++..+|++.. .+..++.++..+
T Consensus 97 ~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---~~~~~a~~l~~~------ 167 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---EILLEAKSWDEI------ 167 (694)
T ss_pred HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999998 899999999888
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 181 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (409)
|++++|+..|++++...|+ ...++..+|.++...|+.++|...|+++++...+-...
T Consensus 168 ---g~~~~A~~~y~~~~~~~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 168 ---GQSEQADACFERLSRQHPE----FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred ---cchHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999999998887 67799999999999999999999999999876544444
No 88
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=6.3e-13 Score=107.03 Aligned_cols=205 Identities=14% Similarity=0.002 Sum_probs=168.8
Q ss_pred hCCCchHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCh
Q 043837 67 DSGEYTKPLEYIDKVVLV------FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADH 140 (409)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 140 (409)
...+.++.+++... ++. ..|+.-.++-....+.+..++.+-|..++++.....|.+..+....|..+...+++
T Consensus 24 ~~rnseevv~l~~~-~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSE-VLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHH-HHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 34455555555554 222 23344555666777888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837 141 DVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK 220 (409)
Q Consensus 141 ~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~ 220 (409)
++|+++|+..+.-||.+.. .+...-.+.... |+..+|++.+...++..+. +.++|..++.+|+.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v---~~KRKlAilka~---------GK~l~aIk~ln~YL~~F~~----D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTV---IRKRKLAILKAQ---------GKNLEAIKELNEYLDKFMN----DQEAWHELAEIYLS 166 (289)
T ss_pred hhHHHHHHHHhccCcchhH---HHHHHHHHHHHc---------CCcHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHh
Confidence 9999999999999999987 555555555555 8889999999999999999 67799999999999
Q ss_pred cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 221 LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE---DWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
.++|++|.-++++.+-+.|.++..+..+|.+++-+| +++-|.++|.++++++|.+......+-.+-..
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998876 67789999999999999776665555444433
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=1.5e-13 Score=112.60 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCC--hHHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY-YYLAD--HDVAQR 145 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~ 145 (409)
++.++++..+.+ ++..+|+++..|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 53 ~~~~~~i~~l~~-~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQD-KIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 444555555555 55556666666666666666666666666666666666666666666666543 44444 355666
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
.++++++.+|++.. ++..++..+... |++++|+.++++++++.|.
T Consensus 132 ~l~~al~~dP~~~~---al~~LA~~~~~~---------g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVT---ALMLLASDAFMQ---------ADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChh---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Confidence 66666666665555 555555555544 5555555555555555554
No 90
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=1e-15 Score=136.77 Aligned_cols=67 Identities=54% Similarity=0.789 Sum_probs=62.5
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..+||++|+|+++++.++|+++|+++|++||||+++. ..|+++|++|++||++|+||+||..||+..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 3689999999999999999999999999999999874 578899999999999999999999999954
No 91
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=5.4e-16 Score=138.57 Aligned_cols=67 Identities=49% Similarity=0.818 Sum_probs=62.4
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|.++++.+||+++||++|++||||+++.. .+++++|++|++||++|+||++|..||+..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G 69 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYG 69 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 5899999999999999999999999999999998754 468999999999999999999999999954
No 92
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.62 E-value=3e-13 Score=133.57 Aligned_cols=266 Identities=11% Similarity=-0.019 Sum_probs=192.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
|++++|...|++. .+.+..+|..+...|.+.|++++|...+...... .++...+......+.+.|++++|.+++.
T Consensus 273 g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 273 GDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 6778888888765 3456778888888888888888888888777552 2233344445556777888888888888
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc--cCCCc
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR--LDPEH 157 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 157 (409)
.+....-+.+..++..+...|.+.|++++|...|++..+ | +...|..+...|...|+.++|++.|++... ..|+.
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 733333356677888888888888888888888887754 2 456788888888888888888888888776 34554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
. .+..+...+... |..++|..+|+...+..+-.| +...|..+..++.+.|++++|.+.+++. ..
T Consensus 427 ~----T~~~ll~a~~~~---------g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~ 490 (697)
T PLN03081 427 V----TFLAVLSACRYS---------GLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRRA-PF 490 (697)
T ss_pred H----HHHHHHHHHhcC---------CcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC-CC
Confidence 4 345554555444 888888888888875322211 3456777888888889998888887764 23
Q ss_pred ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 238 NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 238 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
.| +...|..+..++...|+++.|...+++++++.|++...+..+..++...+
T Consensus 491 ~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 491 KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC
Confidence 33 45567888888888889999988888888888887766666666554443
No 93
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.62 E-value=2.6e-14 Score=110.62 Aligned_cols=129 Identities=25% Similarity=0.277 Sum_probs=117.8
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
..+++++..+|++.. ....++.++... +++++|+..+++++..+|. +..++..+|.++...+++
T Consensus 4 ~~~~~~l~~~p~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE---QIYALAYNLYQQ---------GRYDEALKLFQLLAAYDPY----NSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hhHHHHHcCChhhHH---HHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHH
Confidence 468899999999887 777888887777 9999999999999999999 778999999999999999
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
++|+..+++++..+|+++..++.+|.++...|++++|+..++++++++|++........++...+
T Consensus 68 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 68 EEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988777666665543
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.61 E-value=1.3e-13 Score=133.12 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=176.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDS-GEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~ 80 (409)
+++++|+..++.+++.+|+...+|+.+|.++.+.+++.++... .+...+.. .++ .+++++..
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~~~~~~~~~-~~ve~~~~ 107 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------NLIDSFSQNLKW-AIVEHICD 107 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh----------------hhhhhcccccch-hHHHHHHH
Confidence 6778888888888888888888888888888877776554322 22222222 234 55555555
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
.+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+|+...
T Consensus 108 -~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~------ 179 (906)
T PRK14720 108 -KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF------ 179 (906)
T ss_pred -HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH------
Confidence 44456777789999999999999999999999999999999999999999999999 9999999999987751
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc----------------hHHHHHHHHHHHHHcCCh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH----------------NVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------------~~~~~~~la~~~~~~~~~ 224 (409)
+..++|.++.+++.+.+..+|++... ...++.-+-.+|...++|
T Consensus 180 --------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 180 --------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred --------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 11166777777777777777764321 233445555888899999
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHH
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS---PQDMNIREALMRAEKA 288 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 288 (409)
++++..++.+++.+|.+..+...++.||. +.|.. ...++..+++. .....+...+......
T Consensus 240 ~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 240 DEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred hHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999998 44443 44555555443 3334455555555544
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.61 E-value=1.1e-14 Score=125.79 Aligned_cols=259 Identities=17% Similarity=0.124 Sum_probs=182.9
Q ss_pred CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADP-TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
+|+|..++..++ ....+| ...+..+.+.+++..+|+++..+......- .+........|..+....+-+.++..+.
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~ 90 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKESALEELK 90 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchHHHHHHHH
Confidence 588999997777 333344 345677888999999999876544332211 1111111222222222345566676665
Q ss_pred HHHHhhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837 80 KVVLVFSP-ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 80 ~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (409)
..+....+ .++.+....|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~ 165 (290)
T PF04733_consen 91 ELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI 165 (290)
T ss_dssp HCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH
Confidence 52222222 35667777888999999999999988865 5678888899999999999999999999998877654
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 238 (409)
...++..+..+..+ .+++.+|...|++..+..+. ++.++..++.|++.+|+|++|...+.+++..+
T Consensus 166 -----l~qLa~awv~l~~g-----~e~~~~A~y~f~El~~~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 166 -----LTQLAEAWVNLATG-----GEKYQDAFYIFEELSDKFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp -----HHHHHHHHHHHHHT-----TTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred -----HHHHHHHHHHHHhC-----chhHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 34444444333211 14799999999998887776 67789999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhCCCcHHHHHH
Q 043837 239 EELIEALVQRGEAKLLTEDW-EGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 239 p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
|++++++.+++.+...+|+. +.+.+++.+....+|+++-+...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999998 66778888888899998775543
No 96
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-14 Score=124.77 Aligned_cols=282 Identities=18% Similarity=0.131 Sum_probs=208.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhCC
Q 043837 1 MKHYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDSG 69 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~ 69 (409)
+|++...+..|+.+++...++. .+|..+|.+|..+++|++|+.+-...+... -.+.+.-+.+..+--.|
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G 109 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG 109 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence 4788899999999999987654 568899999999999999987765544422 22333445566677789
Q ss_pred CchHHHHHHHHHHHhh----C--CCcHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhhCCCC
Q 043837 70 EYTKPLEYIDKVVLVF----S--PACSKAKLLKVKLLLAAKD--------------------YASAISETGYLLKEDENN 123 (409)
Q Consensus 70 ~~~~A~~~~~~~~~~~----~--p~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~al~~~p~~ 123 (409)
.|++|+.+..+ -+.+ . -....+++++|.+|...|+ ++.|.++|..-+++....
T Consensus 110 ~fdeA~~cc~r-hLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 110 AFDEALTCCFR-HLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred ccchHHHHHHH-HhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876 2222 1 1246789999999998775 345556666555554332
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH
Q 043837 124 ------LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK 194 (409)
Q Consensus 124 ------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~ 194 (409)
..++-++|..|+.+|+|+.|+..-+.-|.+... ......++.+++.++..+ |+++.|+++|+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl---------g~fe~A~ehYK 259 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL---------GNFELAIEHYK 259 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh---------cccHhHHHHHH
Confidence 236778999999999999999998887776443 333456888999999888 99999999999
Q ss_pred HHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHHHHHHHH
Q 043837 195 AALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEGAVEDLK 266 (409)
Q Consensus 195 ~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~ 266 (409)
..+.+.- .+....+...+.+|..|.-..++++||.+.++-+.+.. ....+++.+|.++-.+|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8876432 23333677889999999999999999999999887643 346788999999999999999999888
Q ss_pred HHHhhC----CCc--HHHHHHHHHHHHHHhhc
Q 043837 267 SAAQQS----PQD--MNIREALMRAEKALKMS 292 (409)
Q Consensus 267 ~al~~~----p~~--~~~~~~l~~~~~~~~~~ 292 (409)
+.+++. ... ...+..|......+.+.
T Consensus 340 ~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 340 LHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 877653 222 23445555555555543
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=4.3e-12 Score=108.83 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
|+|.+|.....+.-+..+...-++..-+.+-.+.|+++.|..+..++-+. ..........+..++.+++++.|..-.+
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 78999999999998888888888888899999999999999988887765 4556667888999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE 119 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 119 (409)
+ ++...|.++.+......+|...|+|......+.+.-+.
T Consensus 178 ~-ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 178 Q-LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA 216 (400)
T ss_pred H-HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 9 89999999999999999999999999988888776553
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.60 E-value=2.2e-13 Score=110.62 Aligned_cols=169 Identities=19% Similarity=0.114 Sum_probs=156.0
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
....+|.+..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++..+.|++..
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~-- 135 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE-- 135 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh--
Confidence 46668999899 999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
.|..++.++... |++++|...|.+++++.|+ .+.+..|+|..+.-.|+++.|..++..+....+.+
T Consensus 136 -~~~~lgaaldq~---------Gr~~~Ar~ay~qAl~L~~~----~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 136 -AWNLLGAALDQL---------GRFDEARRAYRQALELAPN----EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred -hhhHHHHHHHHc---------cChhHHHHHHHHHHHhccC----CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 999999999998 9999999999999999999 56699999999999999999999999999888889
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKS 267 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~ 267 (409)
..+..+++.+....|++.+|.....+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999876643
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.2e-12 Score=110.24 Aligned_cols=254 Identities=13% Similarity=0.049 Sum_probs=168.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH---------------------------HHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS---------------------------QLL 53 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---------------------------~~~ 53 (409)
||+|++|+..|+-+.+.+.-+.+.+.++|.|+.-+|.|.+|.....++-. ...
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD 149 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 68999999999999888777889999999999999999999444333111 011
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA 133 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 133 (409)
..+..+..|...+..-.|++||..|.+ ++..+|.....-..+|.||.++.-|+-+.+.+.--++..|+++.+...++..
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkr-vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn 228 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKR-VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACN 228 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 224445667777777899999999999 8899999999999999999999999999999998888888877655555444
Q ss_pred HH------------------------------------------------------------------hcCChHHHHHHH
Q 043837 134 YY------------------------------------------------------------------YLADHDVAQRHF 147 (409)
Q Consensus 134 ~~------------------------------------------------------------------~~~~~~~A~~~~ 147 (409)
.+ .+++..+|+..+
T Consensus 229 ~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 229 LFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLC 308 (557)
T ss_pred HhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHH
Confidence 43 334444443333
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHHHHH----------------------------------HHhhHHhcCCHHHHHHHH
Q 043837 148 QKGLRLDPEHSELKKAYFALKNLLKKTK----------------------------------SAEDNVSKGKLRVAVEDF 193 (409)
Q Consensus 148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~----------------------------------~~~~~~~~~~~~~A~~~~ 193 (409)
+ .++|..+. -+...+.+...+. .+..++-..++++.+.++
T Consensus 309 K---dl~PttP~---EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 309 K---DLDPTTPY---EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred h---hcCCCChH---HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 2 24555444 3333333333221 111112224555555555
Q ss_pred HHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-hhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837 194 KAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-EELIEALVQRGEAKLLTEDWEGAVEDL 265 (409)
Q Consensus 194 ~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~ 265 (409)
+..-....+ +....++++.++...|++.+|.+.|-++-..+ .+.......+|+||+..++.+-|-..+
T Consensus 383 nSi~sYF~N----dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 383 NSIESYFTN----DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHhcC----cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 554444444 33366677777777777777777776654433 233444556777777777777766554
No 100
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.6e-12 Score=104.67 Aligned_cols=179 Identities=20% Similarity=0.153 Sum_probs=160.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 043837 60 DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLAD 139 (409)
Q Consensus 60 ~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 139 (409)
...+..+..++.+-|..++++ +....|.+..+-...|..+...|++++|+++|+..++-+|.+...+-..-.+...+|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~-L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQ-LRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHH-HHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 345667778999999999998 5556699999999999999999999999999999999999999999988888999999
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837 140 HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV 219 (409)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~ 219 (409)
.-+|++.+..-++..+.+.+ +|..++.+|... ++|++|.-++++++-+.|. ++.++..+|.+++
T Consensus 136 ~l~aIk~ln~YL~~F~~D~E---AW~eLaeiY~~~---------~~f~kA~fClEE~ll~~P~----n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQE---AWHELAEIYLSE---------GDFEKAAFCLEELLLIQPF----NPLYFQRLAEVLY 199 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhH---------hHHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHH
Confidence 99999999999999999999 999999999888 9999999999999999999 6778889999988
Q ss_pred HcC---ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837 220 KLG---RGKDALSSCTEALNINEELIEALVQRGEAKLLT 255 (409)
Q Consensus 220 ~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 255 (409)
-+| ++.-|.++|.++++++|.+..+++.+-.|-...
T Consensus 200 t~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 776 567899999999999998888888776665433
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.60 E-value=1.3e-13 Score=132.21 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK 185 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (409)
..+++..+.......|.+++++.+||.+....|.+++|...++.++++.|++.. ++..++.++... ++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---a~~~~a~~L~~~---------~~ 135 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---AFILMLRGVKRQ---------QG 135 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHh---------cc
Confidence 344444555556678999999999999999999999999999999999999999 999999999998 99
Q ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837 186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDL 265 (409)
Q Consensus 186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 265 (409)
+++|+..+++++..+|+ +...++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|
T Consensus 136 ~eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 136 IEAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcH
Q 043837 266 KSAAQQSPQDM 276 (409)
Q Consensus 266 ~~al~~~p~~~ 276 (409)
++++....+-.
T Consensus 212 ~~a~~~~~~~~ 222 (694)
T PRK15179 212 QAGLDAIGDGA 222 (694)
T ss_pred HHHHHhhCcch
Confidence 99999876543
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=6.4e-12 Score=116.45 Aligned_cols=254 Identities=15% Similarity=0.084 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 22 SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLL 100 (409)
Q Consensus 22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~ 100 (409)
.++++..+.++...|++++|+..+........+. ...-.+|..+++.|++++|...|.. ++..+|++...+..+..+.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~-Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRE-LIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCcHHHHHHHHHHH
Confidence 4556666677777777776666665544433332 2233456666666666666666666 6666666666666666665
Q ss_pred HHcc-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837 101 LAAK-----DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDV-AQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174 (409)
Q Consensus 101 ~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 174 (409)
.... +.+.-...|++.....|....+ ..+...+..-.++.. +..++...+.. .-+. ...++..+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRK--GVPS---LFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhc--CCch---HHHHHHHHHcCh
Confidence 2222 3455556666666666553222 112222222122222 22333333322 2222 444444444322
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHccC----------CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALALD----------PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (409)
.+. .-..+-+.-|...++.. ...|....++++.+|..|...|++++|+++++++|+..|..++.
T Consensus 157 ~K~------~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 157 EKA------AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred hHH------HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 000 00111122222222211 11222235677899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
++..|.++.+.|++.+|.+.++.+-++++.|..+.....+....
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877766655443
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.59 E-value=8.7e-13 Score=124.56 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=173.2
Q ss_pred CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043837 68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHF 147 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 147 (409)
..+...|+..+-+ ++.++|....++..+|.+|...-+...|..+|.+|.++|+.+..+.-..+..|....+++.|....
T Consensus 471 rK~~~~al~ali~-alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 471 RKNSALALHALIR-ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3557888888888 889999999999999999998889999999999999999999999999999999999999999886
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837 148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227 (409)
Q Consensus 148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 227 (409)
-.+-+.+|.... ...|..+|..+ ++.++...|+..++.+++.+|. +..+|..+|.+|...|++..|
T Consensus 550 l~~~qka~a~~~-k~nW~~rG~yy---------Lea~n~h~aV~~fQsALR~dPk----D~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 550 LRAAQKAPAFAC-KENWVQRGPYY---------LEAHNLHGAVCEFQSALRTDPK----DYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHhhhchHHHH-Hhhhhhccccc---------cCccchhhHHHHHHHHhcCCch----hHHHHHHHHHHHHhcCceehH
Confidence 666665554332 11333344444 4449999999999999999999 788999999999999999999
Q ss_pred HHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 228 LSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
++.|.++..++|.+....+..+.+....|+|.+|+..+...+............+..+..
T Consensus 616 lKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~i 675 (1238)
T KOG1127|consen 616 LKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVI 675 (1238)
T ss_pred HHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999999999999998877665555544444443
No 104
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=4.2e-15 Score=133.81 Aligned_cols=67 Identities=49% Similarity=0.769 Sum_probs=62.6
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|+++++.+||+++||+++++||||+++.. ..++++|++|++||++|+||+||+.||+..
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 6999999999999999999999999999999998754 578899999999999999999999999953
No 105
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.58 E-value=1.5e-12 Score=128.67 Aligned_cols=247 Identities=12% Similarity=0.007 Sum_probs=202.8
Q ss_pred CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--HHHHHHHHHHHHHHhCCCchHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADP-TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--LQAQSTFDSALKLYDSGEYTKPLEY 77 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~A~~~ 77 (409)
.|++++|+..|++..+..- -+...+..+..++.+.|++++|...+...+... ......-.....+.+.|++++|..+
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 3789999999999877532 245688899999999999999998888776642 2223334456667889999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc--
Q 043837 78 IDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL-- 153 (409)
Q Consensus 78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 153 (409)
|++ +.. .+..+|..+...|.+.|+.++|++.|++.++. .| +..++..+..++...|..++|..+|+...+.
T Consensus 383 f~~-m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 383 FDR-MPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHh-CCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 987 432 35678999999999999999999999998874 44 4667888889999999999999999998753
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837 154 -DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232 (409)
Q Consensus 154 -~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 232 (409)
.|+.. .|..+...+... |++++|.+.+++. ...| +..+|..+..++...|+++.|...++
T Consensus 458 ~~p~~~----~y~~li~~l~r~---------G~~~eA~~~~~~~-~~~p-----~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 458 IKPRAM----HYACMIELLGRE---------GLLDEAYAMIRRA-PFKP-----TVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CCCCcc----chHhHHHHHHhc---------CCHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34432 566677777666 9999999998764 2334 35678999999999999999999999
Q ss_pred HHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 233 EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 233 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
+.+++.|++...|..++.+|...|++++|.+.++...+.
T Consensus 519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999988765
No 106
>PLN03077 Protein ECB2; Provisional
Probab=99.57 E-value=1.1e-11 Score=125.38 Aligned_cols=167 Identities=13% Similarity=0.097 Sum_probs=75.3
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHHHHHHH
Q 043837 99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR--LDPEHSELKKAYFALKNLLKKTKS 176 (409)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~l~~~~~~~~~ 176 (409)
.|.+.|+.++|...|+.. +.+...|..+...|...|+.++|+..|++... ..|+... +..+-..+...
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T----~~~ll~a~~~~-- 602 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT----FISLLCACSRS-- 602 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc----HHHHHHHHhhc--
Confidence 333444444444444432 22344455555555555555555555555443 2333332 22222222222
Q ss_pred HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE 256 (409)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 256 (409)
|.+++|..+|+...+..+-.| +...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-.++...+
T Consensus 603 -------g~v~ea~~~f~~M~~~~gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 603 -------GMVTQGLEYFHSMEEKYSITP--NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHR 671 (857)
T ss_pred -------ChHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC
Confidence 555555555555542211111 2344555555555555555555555543 22332 333444444444455
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 257 DWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 257 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
+.+.|....+++++++|++...+..+..++
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 555555555555555555555444444443
No 107
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=6.7e-15 Score=131.73 Aligned_cols=67 Identities=54% Similarity=0.872 Sum_probs=62.4
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|.++++.++|+++|++++++||||+++.. .+++++|++|++||++|+||++|..||+..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFG 70 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence 5899999999999999999999999999999998754 468899999999999999999999999854
No 108
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=5.2e-15 Score=132.38 Aligned_cols=66 Identities=47% Similarity=0.884 Sum_probs=61.9
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|.++++.+||+++|++++++||||+++. ..++++|++|++||++|+||++|..||+..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G 69 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFG 69 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHhhC
Confidence 589999999999999999999999999999999864 578899999999999999999999999954
No 109
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.57 E-value=1.3e-14 Score=121.59 Aligned_cols=103 Identities=28% Similarity=0.425 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHH
Q 043837 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQ 247 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (409)
.........+..++..|.+++|++.+..++.++|. .+.++..++.+++++++...|+..|..+++++|+....|..
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~----~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPP----LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhcccccccccCCc----hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 33345556778888999999999999999999999 78899999999999999999999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 248 RGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 248 la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
++.+...+|+|++|..++..+.+++-+
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999998755
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=1.5e-12 Score=119.49 Aligned_cols=223 Identities=18% Similarity=0.169 Sum_probs=177.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 19 PTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVK 98 (409)
Q Consensus 19 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~ 98 (409)
|........++.++..+|-...|+..+++. ..+-....+|...|+..+|..+..+ .++ .|+++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q-~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQ-ELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHH-Hhc-CCCcchhHHHhhh
Confidence 344566778899999999988877766543 3344566677778888888888876 555 6777888888777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHh
Q 043837 99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178 (409)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~ 178 (409)
+....-=|++|.++.+.. +..+...+|......+++.++..+++..++++|-... .|+.+|.+..++
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---~wf~~G~~ALql---- 532 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---TWFGLGCAALQL---- 532 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---HHHhccHHHHHH----
Confidence 766665566666555543 3446677777777788899999999999999888888 888888888888
Q ss_pred hHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW 258 (409)
Q Consensus 179 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 258 (409)
++++.|+..|..++.++|+ +...|.|++.+|...++-.+|...++++++.+-.+...|.+.-.+....|.+
T Consensus 533 -----ek~q~av~aF~rcvtL~Pd----~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 533 -----EKEQAAVKAFHRCVTLEPD----NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred -----hhhHHHHHHHHHHhhcCCC----chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH
Confidence 8899999999999999998 7778999999999999999999999999988888888888888888899999
Q ss_pred HHHHHHHHHHHhhC
Q 043837 259 EGAVEDLKSAAQQS 272 (409)
Q Consensus 259 ~~A~~~~~~al~~~ 272 (409)
++|++.+.+.+.+.
T Consensus 604 eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 604 EDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988887764
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=2.3e-13 Score=105.33 Aligned_cols=116 Identities=26% Similarity=0.302 Sum_probs=61.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH
Q 043837 112 ETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE 191 (409)
Q Consensus 112 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 191 (409)
.+++++..+|++..+.+.+|.++...+++++|+..+++++..+|.+.. ++..++.++... +++++|+.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~---------~~~~~A~~ 72 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---YWLGLAACCQML---------KEYEEAID 72 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHH---------HHHHHHHH
Confidence 344555555555555555555555555555555555555555555544 455555555444 55555555
Q ss_pred HHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837 192 DFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243 (409)
Q Consensus 192 ~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 243 (409)
.+++++..+|+ +...++.+|.++...|++++|+..++++++++|++..
T Consensus 73 ~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 73 AYALAAALDPD----DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 55555555555 3445555555555555555555555555555554443
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.55 E-value=3e-12 Score=123.94 Aligned_cols=237 Identities=14% Similarity=0.115 Sum_probs=162.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837 18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKV 97 (409)
Q Consensus 18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a 97 (409)
+|.+..++..+...+...+++++|...+.. .+..+|+...+++.+|
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~----------------------------------~l~~~P~~i~~yy~~G 72 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEE----------------------------------HLKEHKKSISALYISG 72 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------HHHhCCcceehHHHHH
Confidence 455666666666665555555555444443 4444555555555555
Q ss_pred HHHHHccCHHHH-----------------HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 98 KLLLAAKDYASA-----------------ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 98 ~~~~~~~~~~~A-----------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
.++.+.+++.++ ++++...+...+.+..+++.+|.||-.+|++++|...++++++++|+++.
T Consensus 73 ~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~- 151 (906)
T PRK14720 73 ILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE- 151 (906)
T ss_pred HHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-
Confidence 555544444443 44444444445555588999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
++.+++..+... +.++|+.++.+|+.. +...+++..+.+++.+.+..+|+
T Consensus 152 --aLNn~AY~~ae~----------dL~KA~~m~~KAV~~------------------~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 152 --IVKKLATSYEEE----------DKEKAITYLKKAIYR------------------FIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred --HHHHHHHHHHHh----------hHHHHHHHHHHHHHH------------------HHhhhcchHHHHHHHHHHhcCcc
Confidence 888888877542 788888888887764 44455667777777777777776
Q ss_pred cHHH--------------------HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc--chhhhh
Q 043837 241 LIEA--------------------LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS--KRKDWY 298 (409)
Q Consensus 241 ~~~~--------------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~~~~~ 298 (409)
+.+. +.-+-.+|...++|++++..++.+++++|+|..++..+..++...=.. .-.++.
T Consensus 202 d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l 281 (906)
T PRK14720 202 DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYL 281 (906)
T ss_pred cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHH
Confidence 5433 333447888999999999999999999999999999999998732221 124556
Q ss_pred hhhccccc-CCHHHHHHHHHHH
Q 043837 299 KILGVSKT-ASISEIKRAYKKL 319 (409)
Q Consensus 299 ~~l~~~~~-~~~~e~~~~y~~~ 319 (409)
++.++... .........|.+.
T Consensus 282 ~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 282 KMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred HHhccccCCccHHHHHHHHHHH
Confidence 66666665 4456666667664
No 113
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1.6e-14 Score=129.44 Aligned_cols=69 Identities=61% Similarity=1.006 Sum_probs=64.3
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..+||++|+|+++++.+||+++|++++++||||+++.....++++|++|++||++|+||++|..||+..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 368999999999999999999999999999999987765679999999999999999999999999854
No 114
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1.8e-14 Score=129.65 Aligned_cols=67 Identities=55% Similarity=0.913 Sum_probs=62.5
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G 70 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence 5899999999999999999999999999999998754 468899999999999999999999999954
No 115
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=2.2e-11 Score=112.93 Aligned_cols=255 Identities=18% Similarity=0.165 Sum_probs=183.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHH------hCCCchHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLY------DSGEYTKP 74 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~~~A 74 (409)
.|++++|++++.+....-++....+..+|.++..+|++++|...+...+...+....+|..-.... ...+.+.-
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 478999999999988888888899999999999999999999999998887666655555443333 11234555
Q ss_pred HHHHHHHHHhhCCCc--------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHH---hh
Q 043837 75 LEYIDKVVLVFSPAC--------------------------------SKAKLLKVKLLLAAKDYASAISETGYLL---KE 119 (409)
Q Consensus 75 ~~~~~~~~~~~~p~~--------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~ 119 (409)
..+|++ +....|.+ |.++..+-.+|....+..-....+...+ +.
T Consensus 97 ~~~y~~-l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 97 LELYDE-LAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHH-HHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 666665 33333422 2222222222222222111122222221 11
Q ss_pred ------------CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837 120 ------------DENN--LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK 185 (409)
Q Consensus 120 ------------~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (409)
.|.. .++++.++..|...|++++|+.++++|+...|+.++ .+...+.++... |+
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---ly~~KarilKh~---------G~ 243 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---LYMTKARILKHA---------GD 243 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHC---------CC
Confidence 1111 245688999999999999999999999999999998 999999999988 99
Q ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--hh-------cHHHHHHHHHHHHhcc
Q 043837 186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--EE-------LIEALVQRGEAKLLTE 256 (409)
Q Consensus 186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-------~~~~~~~la~~~~~~~ 256 (409)
+.+|...++.+-.+++. +-.+-...+..+++.|+.++|.+.+..-...+ |. ........|.+|...|
T Consensus 244 ~~~Aa~~~~~Ar~LD~~----DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA----DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred HHHHHHHHHHHHhCChh----hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998 44466667778889999999999988876654 21 1233456799999999
Q ss_pred CHHHHHHHHHHHHhhC
Q 043837 257 DWEGAVEDLKSAAQQS 272 (409)
Q Consensus 257 ~~~~A~~~~~~al~~~ 272 (409)
++..|+..|..+.+..
T Consensus 320 ~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHF 335 (517)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999888764
No 116
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=2.8e-14 Score=128.77 Aligned_cols=67 Identities=60% Similarity=0.955 Sum_probs=62.3
Q ss_pred hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
+||++|+|+++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+...
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 799999999999999999999999999999998764 4688999999999999999999999999543
No 117
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=2.9e-14 Score=127.80 Aligned_cols=67 Identities=57% Similarity=0.987 Sum_probs=62.3
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..+||++|+|.++++.+||+++|++++++||||+++. ..++++|++|++||++|+||++|..||+..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 3689999999999999999999999999999999864 568899999999999999999999999854
No 118
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=3.2e-14 Score=128.55 Aligned_cols=67 Identities=60% Similarity=1.016 Sum_probs=62.2
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|++.++.++|+++|++++++||||++... ..++++|++|++||++|+||++|..||...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g 69 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 5899999999999999999999999999999998754 468889999999999999999999999854
No 119
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=2e-14 Score=128.35 Aligned_cols=68 Identities=59% Similarity=0.927 Sum_probs=62.7
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
.+||++|+|.+.++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+...
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 5899999999999999999999999999999998754 5688899999999999999999999999543
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.52 E-value=3.7e-12 Score=103.64 Aligned_cols=170 Identities=22% Similarity=0.180 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC
Q 043837 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184 (409)
Q Consensus 105 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (409)
+...+...+-.....+|++..+ ..++..+...|+-+.+..+..++....|.+.. .+..++...... |
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~---ll~~~gk~~~~~---------g 114 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE---LLAAQGKNQIRN---------G 114 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH---HHHHHHHHHHHh---------c
Confidence 3344777777888889999999 99999999999999999999999999999887 555555555555 9
Q ss_pred CHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHH
Q 043837 185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVED 264 (409)
Q Consensus 185 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 264 (409)
++..|+..+.++..+.|+ +..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..+
T Consensus 115 ~~~~A~~~~rkA~~l~p~----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 115 NFGEAVSVLRKAARLAPT----DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred chHHHHHHHHHHhccCCC----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 999999999999999999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 265 LKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 265 ~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
+..+....+.+..+...+..+......
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 999999999899999998887665543
No 121
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=2.4e-14 Score=128.25 Aligned_cols=67 Identities=66% Similarity=1.017 Sum_probs=62.4
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|+++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||.+|..||+..
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g 70 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFG 70 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence 6899999999999999999999999999999998764 568889999999999999999999999854
No 122
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=3.9e-14 Score=127.46 Aligned_cols=65 Identities=54% Similarity=0.956 Sum_probs=61.3
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
.+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 5899999999999999999999999999999998654 4689999999999999999999999997
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.52 E-value=7.6e-13 Score=100.58 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=102.0
Q ss_pred HccC-CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837 151 LRLD-PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS 229 (409)
Q Consensus 151 l~~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 229 (409)
..++ ++.-+ ..+.++..+... |++++|...|+-...++|. +...|++||.|+..+|+|++|+.
T Consensus 27 ~~~~~~~~l~---~lY~~A~~ly~~---------G~l~~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 27 LDDDVTQPLN---TLYRYAMQLMEV---------KEFAGAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HCCChHHHHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444 44444 666666666555 9999999999999999999 88899999999999999999999
Q ss_pred HHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 230 SCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 230 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
.|.+++.++|+++.++++.|.|++..|+.+.|++.|+.++.....+++......+++.
T Consensus 91 aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 91 AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988555444443344433
No 124
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=4.1e-14 Score=127.54 Aligned_cols=68 Identities=53% Similarity=0.901 Sum_probs=62.8
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 36899999999999999999999999999999998754 468899999999999999999999999843
No 125
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=5.6e-14 Score=126.39 Aligned_cols=68 Identities=56% Similarity=0.955 Sum_probs=62.5
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||...
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 36899999999999999999999999999999998754 458899999999999999999999999854
No 126
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3.5e-14 Score=122.97 Aligned_cols=68 Identities=54% Similarity=0.794 Sum_probs=62.6
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
..+||++|+|.++++.++|+++|+++++++|||+++. ..++++|++|++||++|+||++|..||+...
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 3689999999999999999999999999999999864 5788899999999999999999999999543
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.50 E-value=1.3e-11 Score=104.30 Aligned_cols=178 Identities=16% Similarity=0.098 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHH---HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAK---LLKVKLLLAAKDYASAISETGYLLKEDENNL---EAL 127 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 127 (409)
.....|..|...+..|+|++|+..|++ ++...|..+.+. +.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~-l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEA-LDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 466688999999999999999999999 888999886554 8999999999999999999999999998864 578
Q ss_pred HHHHHHHHhcC---------------C---hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHH
Q 043837 128 LHRGRAYYYLA---------------D---HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVA 189 (409)
Q Consensus 128 ~~l~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A 189 (409)
+.+|.++..++ + ..+|+..|+..+...|++.-...+...+..+...+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l--------------- 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL--------------- 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH---------------
Confidence 89998865543 1 24788999999999999887666666665554433
Q ss_pred HHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---cHHHHHHHHHHHHhccCHHHHHHHH
Q 043837 190 VEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---LIEALVQRGEAKLLTEDWEGAVEDL 265 (409)
Q Consensus 190 ~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~ 265 (409)
+.--+.+|..|.+.|.|..|+.-++.+++..|+ ..+++..+..+|..+|..++|....
T Consensus 175 ------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 175 ------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred ------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 112234455555555555555555555555443 2455555555565556555555544
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.50 E-value=1.8e-12 Score=98.50 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837 53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR 132 (409)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 132 (409)
......|..|..++..|++++|...|.- +...+|.+...|+++|.|+..+|+|++|+..|.+++.++|+++.+++++|.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~-L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQL-LTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4567779999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCcH
Q 043837 133 AYYYLADHDVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (409)
|++..|+.+.|.+.|+.++.....++
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999999999999874444
No 129
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=4.2e-14 Score=127.15 Aligned_cols=66 Identities=50% Similarity=0.806 Sum_probs=61.7
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|.++++.+||+++|++++++||||+++. ..++++|++|++||++|+||++|..||+..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 69 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence 589999999999999999999999999999999874 468889999999999999999999999854
No 130
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=8.9e-14 Score=125.65 Aligned_cols=69 Identities=58% Similarity=0.977 Sum_probs=63.2
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
..+||++|+|.+.++.+||+++|+++++++|||+++.. .+++++|++|++||++|+||++|..||.+..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 36899999999999999999999999999999998765 4688999999999999999999999998543
No 131
>PLN03077 Protein ECB2; Provisional
Probab=99.49 E-value=5e-11 Score=120.72 Aligned_cols=242 Identities=11% Similarity=0.023 Sum_probs=191.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH--------------------HHHHH--
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ--------------------AQSTF-- 59 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------------------~~~~~-- 59 (409)
|++++|.+.|++..+ .+...|..+...|.+.|++++|+..+.+.+..... ....+
T Consensus 438 g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 438 KCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 678888888887643 34567888888888889999888888776542100 00000
Q ss_pred --------------HHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCC
Q 043837 60 --------------DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DENN 123 (409)
Q Consensus 60 --------------~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~ 123 (409)
.....+.+.|+.++|...|+. . +.+..+|..+...|...|+.++|++.|++..+. .|+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd- 588 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-H----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD- 588 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh-c----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-
Confidence 112345677999999999987 3 567889999999999999999999999998874 454
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC
Q 043837 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRL---DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD 200 (409)
Q Consensus 124 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 200 (409)
...+..+-..+...|.+++|..+|+...+. .|+. . .|..+..++... |++++|.+.+++. .+.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~---~y~~lv~~l~r~---------G~~~eA~~~~~~m-~~~ 654 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-K---HYACVVDLLGRA---------GKLTEAYNFINKM-PIT 654 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-H---HHHHHHHHHHhC---------CCHHHHHHHHHHC-CCC
Confidence 445666667899999999999999998843 4443 3 677777777777 9999999999885 355
Q ss_pred CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 201 PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 201 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
|+ ..+|..+-.++...++.+.+....+++++++|+++..+..++.+|...|+|++|.+..+...+.
T Consensus 655 pd-----~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 655 PD-----PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 54 5577777777888999999999999999999999999999999999999999999999887653
No 132
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=3.9e-14 Score=127.11 Aligned_cols=67 Identities=60% Similarity=0.902 Sum_probs=62.6
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
.+||++|+|+++++.++|+++|++++++||||++++ ..++++|++|++||++|+||++|..||++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 589999999999999999999999999999999874 5788999999999999999999999999644
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.49 E-value=8.4e-13 Score=118.52 Aligned_cols=113 Identities=23% Similarity=0.428 Sum_probs=106.9
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL 254 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 254 (409)
..|..++..++|++|+..|+++++++|+ +..++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 4577778889999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 255 TEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 255 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
+|++++|+..|+++++++|++..+...+..+...++.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887754
No 134
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=6.4e-14 Score=125.82 Aligned_cols=66 Identities=58% Similarity=0.953 Sum_probs=61.7
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|+++++.++|+++|++++++||||+++. ..++++|++|++||++|+||++|..||+..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 69 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFG 69 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence 589999999999999999999999999999999865 468889999999999999999999999954
No 135
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.48 E-value=6.8e-14 Score=126.26 Aligned_cols=64 Identities=50% Similarity=0.803 Sum_probs=59.3
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..+||++|+|+++++.+||+++||++|++||||++.. .++|++|++||++|+||+||..||+..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G 90 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEYG 90 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHHHHhhhc
Confidence 4699999999999999999999999999999999753 369999999999999999999999854
No 136
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.47 E-value=3e-12 Score=110.87 Aligned_cols=273 Identities=21% Similarity=0.163 Sum_probs=187.5
Q ss_pred HHHHHcCChHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHH
Q 043837 30 SVLRQLCRVKARNSVAEK-ELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYAS 108 (409)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 108 (409)
+-++-+|+|..++..+.. ...........+-.++.++..|+++..+..+.. ..+....+...++..+....+.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----CCChhHHHHHHHHHHHhCccchHH
Confidence 445678999988866551 122334456667788889999998877665532 234445666777777766567778
Q ss_pred HHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCH
Q 043837 109 AISETGYLLKEDE--NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL 186 (409)
Q Consensus 109 A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 186 (409)
++..++..+.... .++......|.++...|++++|++.+.+. .+.+ .......++..+ +++
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE---~~al~Vqi~L~~---------~R~ 147 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLE---LLALAVQILLKM---------NRP 147 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHH---HHHHHHHHHHHT---------T-H
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Cccc---HHHHHHHHHHHc---------CCH
Confidence 8887776654332 34556677888999999999999888764 3444 444444555555 999
Q ss_pred HHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHH
Q 043837 187 RVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG--RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVED 264 (409)
Q Consensus 187 ~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 264 (409)
+.|.+.++.+-+.+.+ ...+....+++.+..| ++.+|...|++.....+.++..+..++.+++.+|+|++|.+.
T Consensus 148 dlA~k~l~~~~~~~eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~ 223 (290)
T PF04733_consen 148 DLAEKELKNMQQIDED----SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEEL 223 (290)
T ss_dssp HHHHHHHHHHHCCSCC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998887 5555555666666666 699999999999888888999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC-CCchHHHHHHHHHHH
Q 043837 265 LKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-VDNREEAENKFREIA 343 (409)
Q Consensus 265 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~-~~~~~~a~~~~~~i~ 343 (409)
++++++.+|+++++...+..+...+++ ..+....|....+..||+.. .....+.+..|.++.
T Consensus 224 L~~al~~~~~~~d~LaNliv~~~~~gk-----------------~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCSLHLGK-----------------PTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAV 286 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHHHHTT------------------TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCC-----------------ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999988888777766654 22333444444555566642 223345555565554
Q ss_pred H
Q 043837 344 A 344 (409)
Q Consensus 344 ~ 344 (409)
.
T Consensus 287 ~ 287 (290)
T PF04733_consen 287 A 287 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 137
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=2.9e-12 Score=117.62 Aligned_cols=196 Identities=16% Similarity=0.051 Sum_probs=142.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 043837 60 DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLAD 139 (409)
Q Consensus 60 ~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 139 (409)
..+..+...|=...|+..+++ ...|-....||...|+..+|.....+-++ .|+++..|..+|.+....--
T Consensus 403 ~laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence 344455555666666666655 34555666666666666666666666666 44455556666655555444
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837 140 HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV 219 (409)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~ 219 (409)
|++|.+..+..-.. +...+ +...+.+++|+++..+++..++++|- ....|+.+|.+..
T Consensus 473 yEkawElsn~~sar---------A~r~~---------~~~~~~~~~fs~~~~hle~sl~~npl----q~~~wf~~G~~AL 530 (777)
T KOG1128|consen 473 YEKAWELSNYISAR---------AQRSL---------ALLILSNKDFSEADKHLERSLEINPL----QLGTWFGLGCAAL 530 (777)
T ss_pred HHHHHHHhhhhhHH---------HHHhh---------ccccccchhHHHHHHHHHHHhhcCcc----chhHHHhccHHHH
Confidence 44444444331110 11111 22223449999999999999999998 7789999999999
Q ss_pred HcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 220 KLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
++++++.|..+|..++.++|++.++|.+++.+|+..++..+|...++++++.+-++..+++....+..
T Consensus 531 qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsv 598 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSV 598 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhh
Confidence 99999999999999999999999999999999999999999999999999999888777766554443
No 138
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=1.2e-13 Score=123.71 Aligned_cols=68 Identities=51% Similarity=0.890 Sum_probs=62.8
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..+||++|+|.++++.++|+++|++++++||||+++.. ..++++|++|++||++|+||++|..||++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 36899999999999999999999999999999998754 468889999999999999999999999854
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=5.7e-11 Score=104.84 Aligned_cols=153 Identities=24% Similarity=0.203 Sum_probs=111.5
Q ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837 87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA 166 (409)
Q Consensus 87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 166 (409)
|....+++..|..++..+++++|+..++..+...|+|+..+...+.++...++..+|++.+++++.++|+... .+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---l~~~ 379 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL---LQLN 379 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---HHHH
Confidence 5666777777777777777777777777777777777777777777777777777777777777777777766 6777
Q ss_pred HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837 167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV 246 (409)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (409)
++.++... |++.+|+..++..+..+|+ ++..|..++.+|..+|+-.+|..
T Consensus 380 ~a~all~~---------g~~~eai~~L~~~~~~~p~----dp~~w~~LAqay~~~g~~~~a~~----------------- 429 (484)
T COG4783 380 LAQALLKG---------GKPQEAIRILNRYLFNDPE----DPNGWDLLAQAYAELGNRAEALL----------------- 429 (484)
T ss_pred HHHHHHhc---------CChHHHHHHHHHHhhcCCC----CchHHHHHHHHHHHhCchHHHHH-----------------
Confidence 77777766 7777777777777777777 45577777777777777655543
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 247 QRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 247 ~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
..+..|...|++++|+..+..+.+..
T Consensus 430 A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 430 ARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 34455666677777777777777665
No 140
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.9e-13 Score=123.00 Aligned_cols=67 Identities=52% Similarity=0.917 Sum_probs=62.7
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..+||++|+|.++++.+||+++|++++++||||+++. ..++++|++|++||++|+||++|..||+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 4699999999999999999999999999999999875 578999999999999999999999999843
No 141
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.7e-13 Score=122.82 Aligned_cols=68 Identities=54% Similarity=0.947 Sum_probs=63.8
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|.++++.+||+++|+++++++|||+++.....++++|++|++||++|+||.+|..||+..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G 70 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG 70 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence 58999999999999999999999999999999988766679999999999999999999999999954
No 142
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.45 E-value=6.3e-14 Score=117.41 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY 135 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 135 (409)
...-+++..++++|.|++||.+|.+ .+..+|.++-.+.++|..|+++..+..|...+..++.++.....+|..++.+-.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~-~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYST-AIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhh-hhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3356789999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH-----------------------HHhhHHhcCCHHHHHHH
Q 043837 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK-----------------------SAEDNVSKGKLRVAVED 192 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~~~~~~~~~A~~~ 192 (409)
.+|...+|.+.++.+|.+.|++.++...+..+.......- .+..+...+.++.++.+
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~ 256 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVD 256 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeE
Confidence 9999999999999999999999886555555544322110 11112222334444444
Q ss_pred HHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 193 FKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 193 ~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
+..-+....+ +..+..+ +..+.+..+++.++..+.+++..+|.........+.+-.-.|...++...++.++.+.
T Consensus 257 ~~~~~A~~~~----~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 257 VVSPRATIDD----SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred eeccccccCc----cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence 4333333332 2223333 6667777788888888888888887776666667777777777788888888888888
Q ss_pred CCcHHHHHHHHHH
Q 043837 273 PQDMNIREALMRA 285 (409)
Q Consensus 273 p~~~~~~~~l~~~ 285 (409)
|.+......+.+.
T Consensus 332 P~~~~~~~~~sr~ 344 (536)
T KOG4648|consen 332 PAVETPKETETRK 344 (536)
T ss_pred cccccchhhhhhh
Confidence 8776655555444
No 143
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.45 E-value=2.9e-11 Score=99.94 Aligned_cols=170 Identities=22% Similarity=0.291 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA---CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL---EAL 127 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 127 (409)
.....|..|...+..|+|.+|+..|++ +....|. .+.+.+.+|.+++..+++.+|+..+++.++..|+++ .++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~-l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEK-LIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHH-HHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 456789999999999999999999999 7776665 468899999999999999999999999999999864 578
Q ss_pred HHHHHHHHhcC-----------ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH-----HHHhhHHhcCCHHHHHH
Q 043837 128 LHRGRAYYYLA-----------DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT-----KSAEDNVSKGKLRVAVE 191 (409)
Q Consensus 128 ~~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~A~~ 191 (409)
+.+|.+++.+. ...+|+..|+..+...|++.-+..+...+..+...+ ..+..+++.+.|..|+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 89999876653 245899999999999999877555555555544333 12333344444444444
Q ss_pred HHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837 192 DFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225 (409)
Q Consensus 192 ~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~ 225 (409)
.++.+++..|+.+. ...++..++.+|..+|..+
T Consensus 163 r~~~v~~~yp~t~~-~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 163 RFQYVIENYPDTPA-AEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHSTTSHH-HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHCCCCch-HHHHHHHHHHHHHHhCChH
Confidence 44444444444332 2333444444444444433
No 144
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.6e-12 Score=99.62 Aligned_cols=122 Identities=26% Similarity=0.378 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc-chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA-HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (409)
.+..+-.....++.++..|+|++|...|..||.+.|..+. ....+|.++|.++++++.++.|+..|.++|+++|.+..+
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 3455556667788999999999999999999999997443 356688899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
+.++|.+|.++.++++|++.|++.++.+|...+++..+.++-.
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 9999999999999999999999999999998888877776644
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.45 E-value=3.2e-12 Score=114.78 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=106.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL 137 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 137 (409)
....|..++..++|++|+.+|.+ ++..+|.++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~-Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQ-AIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 56778999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837 138 ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174 (409)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 174 (409)
|++++|+..|++++.++|++.. +...++.+...+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~---~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSR---FTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence 9999999999999999999998 677777766555
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.44 E-value=2.7e-11 Score=106.89 Aligned_cols=156 Identities=23% Similarity=0.195 Sum_probs=142.8
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
..|....+++..+..++..+++++|+..+...+...|+|+. .+...+.++... ++..+|.+.+++++.
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~---~~~~~~~i~~~~---------nk~~~A~e~~~kal~ 368 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY---YLELAGDILLEA---------NKAKEAIERLKKALA 368 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHh
Confidence 34788889999999999999999999999999999999998 777777777766 999999999999999
Q ss_pred cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI 278 (409)
Q Consensus 199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 278 (409)
++|+ ...++.++|.++++.|++.+|+..++..+..+|+++..|..+|.+|..+|+..+|...+-+...+......+
T Consensus 369 l~P~----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A 444 (484)
T COG4783 369 LDPN----SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQA 444 (484)
T ss_pred cCCC----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHH
Confidence 9999 677999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHh
Q 043837 279 REALMRAEKALK 290 (409)
Q Consensus 279 ~~~l~~~~~~~~ 290 (409)
...+..+....+
T Consensus 445 ~~~l~~A~~~~~ 456 (484)
T COG4783 445 IIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHhcc
Confidence 777777666554
No 147
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=7.7e-12 Score=105.57 Aligned_cols=262 Identities=16% Similarity=0.126 Sum_probs=188.6
Q ss_pred CChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLS-EAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.+|..|+..++-.+..+.+.. .....+|.|+..+|+|++|+..+...... ...+......|.+.+-.|.|.+|...-.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 478899999998887765444 66778999999999999999988876662 3345566778888888888888877665
Q ss_pred HH-------------HHhhC------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837 80 KV-------------VLVFS------------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY 134 (409)
Q Consensus 80 ~~-------------~~~~~------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 134 (409)
+. +.+++ .+..+-...+|.+++..-.|++||+.|++++..+|+....-..++.||
T Consensus 116 ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 116 KAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred hCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 41 11111 012234456777888888999999999999999999888889999999
Q ss_pred HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhH-------Hhc--CCHHHHHHHHH----------H
Q 043837 135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDN-------VSK--GKLRVAVEDFK----------A 195 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~--~~~~~A~~~~~----------~ 195 (409)
+++.-++-+.+.+.--+...|++.- +....+.....+-.++.+ .+. ..|..+...++ -
T Consensus 196 yKlDYydvsqevl~vYL~q~pdSti---A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEg 272 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLRQFPDSTI---AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEG 272 (557)
T ss_pred HhcchhhhHHHHHHHHHHhCCCcHH---HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCcc
Confidence 9999999999999999999999886 444443333322111111 111 12333333332 2
Q ss_pred HHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837 196 ALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAA 269 (409)
Q Consensus 196 al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 269 (409)
|++.-|.--...+++..++...|+++++.++|+..++ .++|..|.-+...|.++..+|+--...++++-|.
T Consensus 273 ALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 273 ALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred HHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 3333343222356699999999999999999998886 4789999999999999999998766666665553
No 148
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=3.4e-09 Score=91.35 Aligned_cols=256 Identities=19% Similarity=0.141 Sum_probs=189.3
Q ss_pred HHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHH-HHHHHHhCCCchHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcc
Q 043837 27 HRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD-SALKLYDSGEYTKPLEYIDKVVLVF-SPACSKAKLLKVKLLLAAK 104 (409)
Q Consensus 27 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~ 104 (409)
.-|..-+..|+|..|...+.+.-...+.....|- -|...-..|+++.+-.++.+ +.+. ......+...++.+....+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~e-aae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAE-AAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHhCC
Confidence 3455666779999998888887665555444444 45556677999999999998 5555 3345678889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH-------------------------
Q 043837 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE------------------------- 159 (409)
Q Consensus 105 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------------- 159 (409)
++..|.....++++..|.++.++.....+|...|+|......+.+.-+..--+..
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 9999999999999999999999999999999999999998888776543211111
Q ss_pred HHHHHHHHHHHHH-----HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837 160 LKKAYFALKNLLK-----KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 160 ~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 234 (409)
....|.++-.... ....+..++..|+.++|.+...++++..-+. .+...++ ...-++...=++..++.
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-----~L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-----RLCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-----hHHHHHh--hcCCCCchHHHHHHHHH
Confidence 0111222111111 1123455566699999999999999876662 1222222 34567888888999999
Q ss_pred HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 235 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+.. .+..++.+...+..
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~ 376 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGE 376 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999988754 45556666655544
No 149
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.43 E-value=3.2e-13 Score=88.87 Aligned_cols=64 Identities=52% Similarity=0.862 Sum_probs=60.4
Q ss_pred hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhh
Q 043837 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYD 359 (409)
Q Consensus 296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~ 359 (409)
++|++|||.+.++.++|+++|+++++.+|||+.......++..+..|++||++|++|++|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5799999999999999999999999999999977765789999999999999999999999997
No 150
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=9.5e-09 Score=90.45 Aligned_cols=178 Identities=15% Similarity=0.070 Sum_probs=132.7
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHH---HhcCChHHHHHHHHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE-------ALLHRGRAY---YYLADHDVAQRHFQKGL 151 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~---~~~~~~~~A~~~~~~al 151 (409)
.+..+|.+.++|+..-.+....|+.+.-.+.|++|+...|...+ .|..+-.++ ....+.+.+.+.|+.||
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 46667888888888888888888888888888888887765332 122222222 34577888888888888
Q ss_pred ccCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH
Q 043837 152 RLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS 230 (409)
Q Consensus 152 ~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 230 (409)
++-|...- ..++|...+...... .+...|...+-.|+-.+|.+. +.-..-.+-.++++++.+...
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq---------~~l~~ARkiLG~AIG~cPK~K-----lFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQ---------LNLTGARKILGNAIGKCPKDK-----LFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHH---------cccHHHHHHHHHHhccCCchh-----HHHHHHHHHHHHhhHHHHHHH
Confidence 88876432 334555555555444 888888888888888888733 445555666778889999999
Q ss_pred HHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 231 CTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 231 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
|++-|+..|.+..+|...|.+-..+|+.+.|...|+-|++...
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999988887643
No 151
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=5.5e-11 Score=106.87 Aligned_cols=231 Identities=16% Similarity=0.104 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 23 EAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLL 101 (409)
Q Consensus 23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~ 101 (409)
..++.--..+...++|++|...+.+.+... ......+.+..+++...+|++|+...+. -.... ......+..|.|.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk-~~~~~-~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK-NGALL-VINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh-cchhh-hcchhhHHHHHHHH
Confidence 344444456677888999998888888754 3455667788888999999999966554 11111 11222378999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 043837 102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181 (409)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 181 (409)
+++..++|+.+++ ..++.+..+....|.+++++++|++|+..|+..++-+.++.+... ..++..+-...
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~-r~nl~a~~a~l------- 159 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER-RANLLAVAAAL------- 159 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHhh-------
Confidence 9999999999998 456666778889999999999999999999998887766555111 11111111000
Q ss_pred hcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--------hh-------cHHHHH
Q 043837 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--------EE-------LIEALV 246 (409)
Q Consensus 182 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~-------~~~~~~ 246 (409)
... ..+.+...|+ .....++|.+.++...|+|.+|++.+++++.+. .+ -..+..
T Consensus 160 -------~~~-~~q~v~~v~e---~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 160 -------QVQ-LLQSVPEVPE---DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred -------hHH-HHHhccCCCc---chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 111 3333334443 378899999999999999999999999995431 11 134567
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 247 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
.++.++..+|+..+|.+.|...++.+|.|..
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 8999999999999999999999999887653
No 152
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.1e-12 Score=109.80 Aligned_cols=127 Identities=22% Similarity=0.371 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC----c-------cchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH----T-------AHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 234 (409)
.+...-.....+..+++.++|..|+..|++++..-... . .....++.|++.|+.++++|.+|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 34444455667888888899999999999998753321 1 123567899999999999999999999999
Q ss_pred HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837 235 LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS 292 (409)
Q Consensus 235 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 292 (409)
|+++|+|..+++++|.++..+++|+.|+..|++++++.|+|..+...|..+....+..
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988776653
No 153
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.42 E-value=4.3e-13 Score=120.17 Aligned_cols=65 Identities=63% Similarity=0.977 Sum_probs=60.3
Q ss_pred hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
+||++|+|.+.++.++|+++|++++++||||++.. ..++++|++|++||++|+||.+|..||+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 65 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFG 65 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence 58999999999999999999999999999999873 567889999999999999999999999843
No 154
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3e-13 Score=117.35 Aligned_cols=71 Identities=52% Similarity=0.841 Sum_probs=66.8
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
....||++|+|.++++..+|+++||++|++||||+++....++.+.|+.|..||++||||+.|.=||+...
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999998543
No 155
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.2e-13 Score=122.64 Aligned_cols=67 Identities=54% Similarity=0.871 Sum_probs=62.3
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
.+||++|+|.+.++.++|+++|+++++++|||+++. ..++++|++|++||++|+||++|..||+...
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 589999999999999999999999999999999875 5788899999999999999999999998543
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.41 E-value=5.7e-11 Score=100.43 Aligned_cols=181 Identities=18% Similarity=0.158 Sum_probs=137.5
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEA---LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 164 (409)
.++..++..|..++..|+|++|++.|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|+++.+..++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467778899999999999999999999999999998665 48999999999999999999999999999999888889
Q ss_pred HHHHHHHHHHHHH--hhH-------HhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 165 FALKNLLKKTKSA--EDN-------VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 165 ~~l~~~~~~~~~~--~~~-------~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
+.++.+...+... ..+ .+.....+|+..+++.++..|+++- . .+|...+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-a-----------------~~A~~rl~~-- 169 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-T-----------------TDATKRLVF-- 169 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-H-----------------HHHHHHHHH--
Confidence 9998875444211 000 0112246788999999999998432 1 122221111
Q ss_pred hcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 236 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
+...-..--+..|..|.+.|.|..|+.-++.+++..|+.+...+.+..+....
T Consensus 170 -l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay 222 (243)
T PRK10866 170 -LKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAY 222 (243)
T ss_pred -HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 11122333457889999999999999999999999999887777666555444
No 157
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.8e-09 Score=89.46 Aligned_cols=260 Identities=14% Similarity=0.066 Sum_probs=187.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
.+|..||+++..-.+.+|.+-..+..+|.||+...+|..|..++++.-.. +......+-.|..+++.+.+..|+.....
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 36889999999999999999999999999999999999999888876553 33344555667777777777776665543
Q ss_pred H-----------------------------HHhhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 043837 81 V-----------------------------VLVFSP--ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH 129 (409)
Q Consensus 81 ~-----------------------------~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 129 (409)
+ +++.-| +.+....+.|.+.++.|+++.|++-|+.+++...-++-.-++
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn 183 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN 183 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHH
Confidence 1 111123 567778888999999999999999999999999888999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcc----CCCcH--------HHH-----HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRL----DPEHS--------ELK-----KAYFALKNLLKKTKSAEDNVSKGKLRVAVED 192 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~----~p~~~--------~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~ 192 (409)
++.+++..+++..|+++....+.. .|.-. ++. ..+..-+.+....-++...++.++++.|.+.
T Consensus 184 iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~ea 263 (459)
T KOG4340|consen 184 LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEA 263 (459)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHH
Confidence 999999999999999998887752 22210 000 0122222222222234455666999888877
Q ss_pred HHHHHccCCCCc-cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837 193 FKAALALDPNHT-AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDL 265 (409)
Q Consensus 193 ~~~al~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 265 (409)
+.. +-|... ...+..+.+++..-. .+++.+...-++-.+.++|--.+...++-.+|++..-|+-|...+
T Consensus 264 LtD---mPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 264 LTD---MPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred hhc---CCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 653 333211 114557777775433 466778888888889999977888888888888888777776554
No 158
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=9.1e-13 Score=118.60 Aligned_cols=67 Identities=55% Similarity=0.892 Sum_probs=61.9
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
.+||++|+|.+.++.++|+++|+++++++|||++.. ..++++|++|++||++|+||++|..||+...
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 379999999999999999999999999999999874 5788999999999999999999999999543
No 159
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=7.2e-10 Score=113.57 Aligned_cols=271 Identities=14% Similarity=-0.011 Sum_probs=196.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHhC
Q 043837 1 MKHYSEALDDLNTAIEADPTLS-----EAYFHRGSVLRQLCRVKARNSVAEKELSQLL-------QAQSTFDSALKLYDS 68 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~a~~~~~~ 68 (409)
.|++++|...+++++...|... .+...+|.++...|++++|...+.+.+.... ........+..++..
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4789999999999998655422 3567788999999999999999888875322 233445678888999
Q ss_pred CCchHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFS--------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-----NLEALLHRGRAYY 135 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~ 135 (409)
|++++|...+.+ ++... +....++..+|.++...|++++|...+.+++..... ....+..++.++.
T Consensus 545 G~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 545 GFLQAAYETQEK-AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCHHHHHHHHHH-HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 999999999988 44431 112344667899999999999999999999876332 2445667899999
Q ss_pred hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC 215 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la 215 (409)
..|+++.|...+.++..+.+..............+ ....+...|+.+.|...+.......+.........+..++
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV-----RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH-----HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 99999999999999977543321100011110000 0111222489999999988766543332211223356899
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 216 KVLVKLGRGKDALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
.++...|++++|+..+++++.... ....++..+|.++...|+.++|...+.+++++.....-
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 999999999999999999987632 34567888999999999999999999999998765443
No 160
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.1e-08 Score=90.13 Aligned_cols=300 Identities=12% Similarity=0.053 Sum_probs=159.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL-KLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~ 80 (409)
+++..|...|++||..+..+...|+..+.+-.+......|..+..+++...+.....+.+-+ .--..|+..-|.++|++
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45677888899999998888888888888888888888887777777766555444333222 22233555555555555
Q ss_pred HHHhhCCC--------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---
Q 043837 81 VVLVFSPA--------------------------------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE--- 125 (409)
Q Consensus 81 ~~~~~~p~--------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 125 (409)
-+...|+ ....|...|..-.+.|+..-|...|.+|++.-.++..
T Consensus 167 -W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 167 -WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred -HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344332 2344444445555555555555555555544333211
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH---------------HHhhH----------
Q 043837 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK---------------SAEDN---------- 180 (409)
Q Consensus 126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~---------------~~~~~---------- 180 (409)
.+...|..-..+..++.|...|+-||..-|.+..- ..+..+.....+.+ +.+..
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~rae-eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDs 324 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAE-ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchH
Confidence 22333344444555666666666666555544210 00000000000000 00000
Q ss_pred --------HhcCCHHHHHHHHHHHHccCC--------------------------------------------CCccchH
Q 043837 181 --------VSKGKLRVAVEDFKAALALDP--------------------------------------------NHTAHNV 208 (409)
Q Consensus 181 --------~~~~~~~~A~~~~~~al~~~~--------------------------------------------~~~~~~~ 208 (409)
-..|+.+.-.+.|++|+...| ...-..+
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFa 404 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFA 404 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHH
Confidence 001445555555555555444 3222233
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
.+|...|.....+.+...|.+.+-.||-..|.+ .+......+-.++++++.....|++-++..|.+-.++...+.+...
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence 444444444445555555555555555555532 2223333455567788888888888888888888888887777777
Q ss_pred Hhhcchhhhhhhhccc
Q 043837 289 LKMSKRKDWYKILGVS 304 (409)
Q Consensus 289 ~~~~~~~~~~~~l~~~ 304 (409)
+....+.-..-.|.++
T Consensus 484 LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 484 LGDTDRARAIFELAIS 499 (677)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 7766654433333333
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.38 E-value=1.2e-10 Score=96.32 Aligned_cols=172 Identities=22% Similarity=0.184 Sum_probs=121.9
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 165 (409)
.+..++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..+++++|+..+++.+...|+++.+..+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999998875 568899999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHh--hHHhcCCHHHHHHHHHHHHccCCCCccc-------------hHHHHHHHHHHHHHcCChhHHHHH
Q 043837 166 ALKNLLKKTKSAE--DNVSKGKLRVAVEDFKAALALDPNHTAH-------------NVHLYLGLCKVLVKLGRGKDALSS 230 (409)
Q Consensus 166 ~l~~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~ 230 (409)
.++.++....... ...+.....+|+..|+..++..|+++-. ...--+.+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888876553221 1234466789999999999999986531 111123456666666666666666
Q ss_pred HHHHHhcChhc---HHHHHHHHHHHHhccCHHH
Q 043837 231 CTEALNINEEL---IEALVQRGEAKLLTEDWEG 260 (409)
Q Consensus 231 ~~~al~~~p~~---~~~~~~la~~~~~~~~~~~ 260 (409)
++.+++..|+. .+++..++.+|.++|..+.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 66666665543 3455666666666666653
No 162
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8.6e-13 Score=111.46 Aligned_cols=67 Identities=51% Similarity=0.880 Sum_probs=64.2
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
..+||.+||+..+++..+|+++|+..++++||||++++.+ |..+|+.+++||++|+|+++|..||..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~~YDk~ 70 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRAAYDKL 70 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999976 999999999999999999999999983
No 163
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=6.6e-13 Score=119.16 Aligned_cols=66 Identities=59% Similarity=0.911 Sum_probs=61.1
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|.++++.++|+++|++++++||||++.. ..++++|++|++||++|+||.+|..||+..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 589999999999999999999999999999999863 457889999999999999999999999943
No 164
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.8e-12 Score=112.66 Aligned_cols=68 Identities=46% Similarity=0.758 Sum_probs=64.1
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC--CCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN--VDNREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~--~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
.+.++|.+|++.++++.+||+++||+++..+|||+. ++.++.|+.+|+.|.+|||+|+||.+|.-||.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~ 76 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN 76 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 346899999999999999999999999999999994 56889999999999999999999999999999
No 165
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.30 E-value=3e-12 Score=112.00 Aligned_cols=66 Identities=45% Similarity=0.824 Sum_probs=61.4
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.++|++|++++.++.++|+++|+++++++|||++.. ..++++|++|++||++|+||.+|..||...
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 589999999999999999999999999999999764 468999999999999999999999999853
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=3.3e-10 Score=89.38 Aligned_cols=200 Identities=19% Similarity=0.119 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 043837 50 SQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH 129 (409)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 129 (409)
.....+.-.++++..+-..|-+.-|.--|.+ ++.+.|..+.++..+|..+...|+|+.|.+.|+.+++++|.+.-++.+
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQ-aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQ-ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhh-hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 3455667778888888888888888888888 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHH-HHccCCCCccchH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKA-ALALDPNHTAHNV 208 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~ 208 (409)
+|..++.-|++.-|.+.+.+-...||+++-- ..|..+.. .. -+..+|...+.+ +...+.+ .
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR-~LWLYl~E---~k---------~dP~~A~tnL~qR~~~~d~e-----~ 200 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPFR-SLWLYLNE---QK---------LDPKQAKTNLKQRAEKSDKE-----Q 200 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcCCCChHH-HHHHHHHH---hh---------CCHHHHHHHHHHHHHhccHh-----h
Confidence 9999999999999999999999999998852 12322221 11 466666655543 3333332 2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINE-------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
+-|+... +.+|+..+ ...++++..-.. .-.++++.+|..+...|+.++|...|+-++..+
T Consensus 201 WG~~iV~---~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 201 WGWNIVE---FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hhHHHHH---HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2222221 22233221 122333332222 236789999999999999999999999888754
No 167
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5.1e-12 Score=99.71 Aligned_cols=73 Identities=47% Similarity=0.847 Sum_probs=66.2
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcc
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD-NREEAENKFREIAAAYEVLGDDDKRARYDRGEDIE 365 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~-~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~ 365 (409)
...+.|++|||.++++..+|+++|+++++.||||++++ ...++..+|+.++.+|.+|+|.++|..||....++
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 34589999999999999999999999999999999864 56889999999999999999999999999866554
No 168
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.5e-12 Score=109.18 Aligned_cols=66 Identities=55% Similarity=0.904 Sum_probs=62.5
Q ss_pred hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
++|++||+.+.++..||+++|+++++++|||.+... +++++|++|.+|||+|+|++||..||...-
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~ 109 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQEYDVYGL 109 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 899999999999999999999999999999998875 899999999999999999999999998433
No 169
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.7e-12 Score=102.80 Aligned_cols=67 Identities=57% Similarity=0.893 Sum_probs=63.4
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
..++|.+||+.++++.++|+++||++++++|||++.++ +++-.+|++|+.||.+|+||.+|..||..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-PEATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-chhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 45799999999999999999999999999999999888 78889999999999999999999999995
No 170
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=4e-12 Score=114.34 Aligned_cols=66 Identities=53% Similarity=0.893 Sum_probs=61.3
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++|+|.++++.++|+++|+++++++|||+++. ..++++|++|++||++|+||.+|..||...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g 68 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQFG 68 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 589999999999999999999999999999999875 457889999999999999999999999854
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.29 E-value=1.7e-11 Score=82.38 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhCC
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE-DWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 273 (409)
++.+|..+|.++...+++++|+.+|+++++++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56799999999999999999999999999999999999999999999999 79999999999999998
No 172
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.28 E-value=1.3e-10 Score=87.71 Aligned_cols=110 Identities=22% Similarity=0.197 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL- 241 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~- 241 (409)
.++.++..+... +++++|+..|.+++...|+++. ...+++.+|.++...+++++|+..|++++..+|++
T Consensus 4 ~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 4 AYYDAALLVLKA---------GDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 455555555555 9999999999999999988543 46789999999999999999999999999998875
Q ss_pred --HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837 242 --IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL 282 (409)
Q Consensus 242 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 282 (409)
+.++..+|.++..++++++|+..++++++..|++..+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 67899999999999999999999999999999987765443
No 173
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=6.6e-09 Score=84.84 Aligned_cols=256 Identities=18% Similarity=0.101 Sum_probs=176.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
+|+|.++|..-.+.-... ...+..+.+.+.|+.+|.+..-+......-.....+. ...+...-.-++-+.-+.-+.+
T Consensus 21 ~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAv--r~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAV--RLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHH--HHHHHHhhCcchhHHHHHHHHH
Confidence 466777776666544333 6777888889999999987654333322211111111 1111111112333333333333
Q ss_pred HH-HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 81 VV-LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 81 ~~-~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
.+ ......+......-|.++...+++++|+...... .+.++...--.|+.++.+.+-|...++++..++.+.
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-- 170 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA-- 170 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--
Confidence 23 3333344466677788999999999999888763 345666677788899999999999999999987664
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
.+..++..+..+..+ .+++.+|.-+|++.-+..|. .+.+....+.|++.+++|++|...++.++..++
T Consensus 171 ---tLtQLA~awv~la~g-----gek~qdAfyifeE~s~k~~~----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 171 ---TLTQLAQAWVKLATG-----GEKIQDAFYIFEELSEKTPP----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred ---HHHHHHHHHHHHhcc-----chhhhhHHHHHHHHhcccCC----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 344455555443222 26689999999999886665 577899999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHH-HHHHHHhhCCCcHHH
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVE-DLKSAAQQSPQDMNI 278 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~~ 278 (409)
++++++.++-.+-..+|...++.+ .+.+....+|+++-+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999999999999999998866654 556666667877654
No 174
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.28 E-value=1.8e-11 Score=82.31 Aligned_cols=67 Identities=33% Similarity=0.398 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA-DHDVAQRHFQKGLRLDP 155 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p 155 (409)
++.+|..+|.+++..+++++|+..|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57789999999999999999999999999999999999999999999999 79999999999999987
No 175
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.27 E-value=5.7e-11 Score=102.34 Aligned_cols=237 Identities=16% Similarity=0.097 Sum_probs=168.1
Q ss_pred HHHHHHHcCChHHHhHHHHHHHHH----HHH-HHHHHHHHHHHHhCCCchHHHHHHHHH-----HHhhCCCcHHHHHHHH
Q 043837 28 RGSVLRQLCRVKARNSVAEKELSQ----LLQ-AQSTFDSALKLYDSGEYTKPLEYIDKV-----VLVFSPACSKAKLLKV 97 (409)
Q Consensus 28 la~~~~~~g~~~~A~~~~~~~l~~----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~-----~~~~~p~~~~~~~~~a 97 (409)
-|.-+++.|+....+..++.++.. ... ...+-+.+..++-.++|.+|+++-..- .+...-..+..--++|
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 356678889999888888888773 222 233445778888899999999875431 1111223455667899
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCh-------------HHHHHHHHHHHccCCCcH
Q 043837 98 KLLLAAKDYASAISETGYLLKEDEN------NLEALLHRGRAYYYLADH-------------DVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~-------------~~A~~~~~~al~~~p~~~ 158 (409)
.++-.+|.|++|+.++.+-+.+... ...++|++|.+|...|+. +++...++.|++..-.+.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876432 345899999999887642 233344444443322222
Q ss_pred H----------HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--ccchHHHHHHHHHHHHHcCChhH
Q 043837 159 E----------LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--TAHNVHLYLGLCKVLVKLGRGKD 226 (409)
Q Consensus 159 ~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 226 (409)
. ...++-+++..|..+ |+|+.||..-+.-+.+.... ......++.++|.|+.-+|+++.
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlL---------Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLL---------GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeee---------ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 1 112344444444444 99999999998888775532 22245688999999999999999
Q ss_pred HHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 227 ALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 227 A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
|+++|++.+.+.- ..+...+.+|..|.-+.++++|+.++++-+.+..
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876532 3466788999999999999999999999887653
No 176
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=1.8e-10 Score=86.82 Aligned_cols=103 Identities=22% Similarity=0.302 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLH 129 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 129 (409)
...+..+..++..|++++|+..|.+ ++...|++ +.+++.+|.++...++++.|+..|++++..+|++ +.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQA-FLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4567888889999999999999988 77777765 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+|.++..++++++|+.++++++...|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999999876
No 177
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.25 E-value=1.3e-10 Score=97.89 Aligned_cols=117 Identities=18% Similarity=0.274 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837 167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV 246 (409)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (409)
|...-...++++.++++|+|++|+.+|.+++..+|. ++.++.+++.+|++++.+..|...|+.++.++.....+|.
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~----NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH----NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC----CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 333344567899999999999999999999999998 5669999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 247 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
+++.+...+|+..+|.+.++.++++.|++.+++..+..+..
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999887776655543
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.24 E-value=6e-10 Score=89.49 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCchHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPA--CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A 143 (409)
..|..+...+.. ++..++. ...+++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|
T Consensus 13 ~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 13 KTFTIVADILLR-ILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred cccccchhhhhH-hccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 345555555544 4334444 36778999999999999999999999999987763 45899999999999999999
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH-------HHHHHHHHHHccCCC
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLR-------VAVEDFKAALALDPN 202 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~al~~~~~ 202 (409)
+..+++++.++|.... .+..++.++... +..+...|+++ +|+.++++++..+|.
T Consensus 92 ~~~~~~Al~~~~~~~~---~~~~la~i~~~~--~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 92 LEYYFQALERNPFLPQ---ALNNMAVICHYR--GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHhCcCcHH---HHHHHHHHHHHh--hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999887 788888888755 33344456655 444444455555554
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.23 E-value=3.5e-11 Score=84.23 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHH
Q 043837 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV 262 (409)
Q Consensus 183 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 262 (409)
+++|+.|+.+++++++..|.++ +..+++.+|.|++..|++++|+..+++ +..+|.+....+.+|.|+..+|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4899999999999999999643 456788899999999999999999999 8888988999999999999999999999
Q ss_pred HHHHHH
Q 043837 263 EDLKSA 268 (409)
Q Consensus 263 ~~~~~a 268 (409)
+.|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.23 E-value=8.9e-09 Score=89.90 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHhc-CChHHHHHHHHHHHccCC---CcHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDE--N----NLEALLHRGRAYYYL-ADHDVAQRHFQKGLRLDP---EHSEL 160 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p---~~~~~ 160 (409)
..+...+.++... ++++|+.+|++++.+.- . -...+..+|.+|... +++++|+++|++|+.+.. .....
T Consensus 76 ~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a 154 (282)
T PF14938_consen 76 KAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA 154 (282)
T ss_dssp HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence 4455556666555 88888888888887632 1 134678899999998 999999999999998632 22333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--c-hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--H-NVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
...+..++.++..+ ++|++|+..|+++....-+++. . ....++..+.|++..|++..|...+++....
T Consensus 155 ~~~~~~~A~l~~~l---------~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 155 AECLLKAADLYARL---------GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44666667666666 9999999999999876543321 1 2245677888999999999999999999998
Q ss_pred Chhc-----HHHHHHHHHHHHh--ccCHHHHHHHHHHHHhhC
Q 043837 238 NEEL-----IEALVQRGEAKLL--TEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 238 ~p~~-----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~ 272 (409)
+|.. ......+-.++-. ...+.+|+..|.+..+++
T Consensus 226 ~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 226 DPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp STTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 8743 3444444555443 356778888777665554
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=4.3e-10 Score=90.59 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205 (409)
Q Consensus 126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 205 (409)
+++.+|.++...|++++|+.+|++++...|+......++..++.++... |++++|+..+.+++...|+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~--- 104 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN---------GEHDKALEYYHQALELNPK--- 104 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcc---
Confidence 4445555555555555555555555544433222122444455544444 5555555555555555555
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
....+..+|.++...++...+...+..++. .+++|++++++++..+|++
T Consensus 105 -~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 -QPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -cHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 344555666666666665555554444432 2566777777777777765
No 182
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.22 E-value=1.7e-11 Score=116.90 Aligned_cols=66 Identities=41% Similarity=0.641 Sum_probs=61.7
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
..+||.+|||.++++..+|+++|+++|+++|||+++.. .+..+|+.|.+||++|+||++|..||.+
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~ 637 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKF 637 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 46899999999999999999999999999999998764 5788999999999999999999999984
No 183
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.22 E-value=2.9e-08 Score=84.56 Aligned_cols=240 Identities=18% Similarity=0.121 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHH----HHHHHHhCCCchHHHHHHHHHH---HhhC--CCcHHHHH
Q 043837 24 AYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFD----SALKLYDSGEYTKPLEYIDKVV---LVFS--PACSKAKL 94 (409)
Q Consensus 24 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~A~~~~~~~~---~~~~--p~~~~~~~ 94 (409)
-....|.-++...+++.|+....+.+....+....+. .+...-++|.|++++.+--..+ .+.+ .....++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777766666665555444432 3334555666666665543211 1111 12357788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH---HHHHHHH
Q 043837 95 LKVKLLLAAKDYASAISETGYLLKEDENNL-----EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE---LKKAYFA 166 (409)
Q Consensus 95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~ 166 (409)
+++..+...-++.+++.+.+..+.+....+ .++..++.++.-++.++++++.|++|+.+..++.+ -..++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 999999999999999999998887643332 46778999999999999999999999987544332 1236788
Q ss_pred HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC------ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--
Q 043837 167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH------TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-- 238 (409)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 238 (409)
++..+..+ .++++|+.+..+|.++.... ..+...+++.++.++..+|+.-.|.++++++.++.
T Consensus 168 Lgslf~~l---------~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 168 LGSLFAQL---------KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred HHHHHHHH---------HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 88888888 99999999999998865431 12345677889999999999999999999998763
Q ss_pred ----hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 239 ----EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 239 ----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
+-......-+|.+|...|+.+.|..-|+.|....
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3456677889999999999999999999998765
No 184
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.3e-10 Score=95.76 Aligned_cols=138 Identities=24% Similarity=0.298 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCC--------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 043837 53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSP--------------ACSKAKLLKVKLLLAAKDYASAISETGYLLK 118 (409)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 118 (409)
..+...-..+..+++.|+|..|+..|++++.-+.- .-..+++++|.|++++++|.+|+..+.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34444556666777777777777777763222210 1245789999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
++|+|..+++..|.++..+++++.|+..|+++++++|+|.. +...+..+..... ...+...+.|..++.
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka---~~~el~~l~~k~~--------~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA---ARAELIKLKQKIR--------EYEEKEKKMYANMFA 354 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988 6666665554441 223344667777776
Q ss_pred cCC
Q 043837 199 LDP 201 (409)
Q Consensus 199 ~~~ 201 (409)
..+
T Consensus 355 k~~ 357 (397)
T KOG0543|consen 355 KLA 357 (397)
T ss_pred ccc
Confidence 544
No 185
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.21 E-value=2.3e-09 Score=83.68 Aligned_cols=132 Identities=20% Similarity=0.142 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HH
Q 043837 52 LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LE 125 (409)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 125 (409)
...+...|..+...+..++...+...++. +....|.. ..+.+.+|.+++..|++++|+..|+.++...|+. ..
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQ-LAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 34566678888888889999999888988 77778887 6778889999999999999999999999987664 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Q 043837 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAAL 197 (409)
Q Consensus 126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 197 (409)
+.+.++.++...|++++|+..++.. .-.+-.+. ++..+|.++... |++++|+..|+++|
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~---~~~~~Gdi~~~~---------g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQI-PDEAFKAL---AAELLGDIYLAQ---------GDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHH---HHHHHHHHHHHC---------CCHHHHHHHHHHhC
Confidence 7789999999999999999999762 22222222 666777777766 99999999999875
No 186
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.21 E-value=4.1e-11 Score=77.78 Aligned_cols=59 Identities=63% Similarity=1.054 Sum_probs=54.3
Q ss_pred hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhh
Q 043837 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDK 354 (409)
Q Consensus 296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~ 354 (409)
++|++||+.+.++.++|+++|+++++.+|||+.......++..|..|++||++|+||.+
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 68999999999999999999999999999999875457889999999999999999863
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.21 E-value=1e-09 Score=102.71 Aligned_cols=151 Identities=16% Similarity=0.124 Sum_probs=116.9
Q ss_pred hhCCCCHHHH--HHHHHHHHhcCC---hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHH
Q 043837 118 KEDENNLEAL--LHRGRAYYYLAD---HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVED 192 (409)
Q Consensus 118 ~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~ 192 (409)
..-|.+..+| +..|..+....+ ...|+.+|+++++++|++.. ++..++.++....... -....+...+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---a~A~la~~~~~~~~~~-~~~~~~l~~a~~~ 406 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---AQAEKALADIVRHSQQ-PLDEKQLAALSTE 406 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 3456666665 566766665544 77899999999999999987 7777666654331111 0112345566777
Q ss_pred HHHHHcc--CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 193 FKAALAL--DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 193 ~~~al~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
..+++.+ +|. .+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.
T Consensus 407 ~~~a~al~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 407 LDNIVALPELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHhhhcccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7776665 444 456888899999999999999999999999999 588999999999999999999999999999
Q ss_pred hCCCcHH
Q 043837 271 QSPQDMN 277 (409)
Q Consensus 271 ~~p~~~~ 277 (409)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9999875
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.5e-09 Score=90.98 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837 140 HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV 219 (409)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~ 219 (409)
.+.-+.-++.-+..+|++.. -|..++.++... +++..|...|.+++++.|+ ++.++..+|.+++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~e---gW~~Lg~~ym~~---------~~~~~A~~AY~~A~rL~g~----n~~~~~g~aeaL~ 201 (287)
T COG4235 138 MEALIARLETHLQQNPGDAE---GWDLLGRAYMAL---------GRASDALLAYRNALRLAGD----NPEILLGLAEALY 201 (287)
T ss_pred HHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHh---------cchhHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Confidence 56677788888999999999 999999999999 9999999999999999999 7789999999987
Q ss_pred HcC---ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837 220 KLG---RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285 (409)
Q Consensus 220 ~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 285 (409)
.+. ...++...+++++.++|+++.+.+.+|..++..|+|.+|+..++..+...|.+..-+..+.+.
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 765 457899999999999999999999999999999999999999999999998876655555444
No 189
>PRK11906 transcriptional regulator; Provisional
Probab=99.20 E-value=8.3e-10 Score=98.17 Aligned_cols=159 Identities=11% Similarity=0.009 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 4 YSEALDDLNTAI---EADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 4 ~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
.+.|+.+|.+++ +++|+++.+|..++.|+...-- .+..- ...+..+|+.+.++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-----------------------~g~~~-~~~~~~~a~~~A~r 329 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-----------------------HGKSE-LELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-----------------------hcCCC-chHHHHHHHHHHHH
Confidence 467999999999 9999999999999999875411 00000 11223445555555
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
+++++|.++.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+.++|++.++++++++|.....
T Consensus 330 -Aveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 330 -VSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred -HHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
......+ ..| -....++|+..|-+-.+
T Consensus 409 ~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 409 VVIKECV-DMY----------VPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHH-HHH----------cCCchhhhHHHHhhccc
Confidence 1111111 011 11667778877765443
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2e-09 Score=90.24 Aligned_cols=122 Identities=22% Similarity=0.232 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK 185 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (409)
.+.-+.-++.-+..+|++.+-|..||.+|..++++..|...|.+++++.|++++ .+..++.++.... ....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---~~~g~aeaL~~~a------~~~~ 208 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---ILLGLAEALYYQA------GQQM 208 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhc------CCcc
Confidence 455555566666666666666666666666666666666666666666666666 5555555554431 1134
Q ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
..++...+++++..+|+ +..+...+|..++..|+|.+|+..++..+...|.
T Consensus 209 ta~a~~ll~~al~~D~~----~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 209 TAKARALLRQALALDPA----NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 55666666666666666 5556666666666666666666666666666553
No 191
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.20 E-value=2.6e-09 Score=83.35 Aligned_cols=121 Identities=22% Similarity=0.202 Sum_probs=80.0
Q ss_pred HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837 101 LAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177 (409)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 177 (409)
...++...+...++.+++.+|+. ..+.+.+|.+++..|++++|+..|+.++...|+......+...++.++...
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~--- 98 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ--- 98 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc---
Confidence 35777777877788888888877 445677888888888888888888888887665543333455555555544
Q ss_pred hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
|++++|+..++.+ .-.+ ..+.++..+|.++...|++++|+..|+++|
T Consensus 99 ------~~~d~Al~~L~~~-~~~~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 ------GQYDEALATLQQI-PDEA----FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ------CCHHHHHHHHHhc-cCcc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777777776441 1111 145566666777777777777776666653
No 192
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=9.7e-08 Score=98.03 Aligned_cols=262 Identities=16% Similarity=0.047 Sum_probs=183.2
Q ss_pred CCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH------HHHHHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPT---------LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL------QAQSTFDSALKL 65 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~a~~~ 65 (409)
.+++++|...+.++...-+. .......++.++...|++++|...+...+.... ........+..+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 36889999999888764221 234455678889999999999999988776211 223345567778
Q ss_pred HhCCCchHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHH
Q 043837 66 YDSGEYTKPLEYIDKVVLVFSPA------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--------NLEALLHRG 131 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~ 131 (409)
...|++++|+..+.+ ++..... ...++..+|.++...|++++|...+.+++..... ....+..+|
T Consensus 502 ~~~G~~~~A~~~~~~-al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 502 HCKGELARALAMMQQ-TEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHcCCHHHHHHHHHH-HHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 889999999999988 5433211 1346678899999999999999999999886221 123456789
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccch--
Q 043837 132 RAYYYLADHDVAQRHFQKGLRLDPEH--SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN-- 207 (409)
Q Consensus 132 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-- 207 (409)
.++...|++++|...+.+++...... ......+..++.+.... |++++|...+.++..+.+......
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---------G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR---------GDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhcccccHhH
Confidence 99999999999999999998864321 11122344444444444 999999999999987644321100
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 208 -VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI----EALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 208 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
..........+...|+.+.|..++.......+... ..+..++.++...|++++|...+++++...
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11111123455668899999998877655332221 225678999999999999999999999864
No 193
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=7.1e-10 Score=91.77 Aligned_cols=188 Identities=15% Similarity=0.054 Sum_probs=151.0
Q ss_pred HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
+++..+|..||+++.. -.+.+|.+...+..+|.||+...+|..|.++|++.-.+.|......+..+..++..+.+..|+
T Consensus 20 lI~d~ry~DaI~~l~s-~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGS-ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHH-HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 4566788899998877 778889899999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
......... .. .+...-.+. +...++.+++..+....++.-.. + .+....+.|.+.++.|++
T Consensus 99 rV~~~~~D~----~~---L~~~~lqLq-----aAIkYse~Dl~g~rsLveQlp~e--n----~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 99 RVAFLLLDN----PA---LHSRVLQLQ-----AAIKYSEGDLPGSRSLVEQLPSE--N----EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHhcCC----HH---HHHHHHHHH-----HHHhcccccCcchHHHHHhccCC--C----ccchhccchheeeccccH
Confidence 888775443 22 222111111 22233446776666665543211 1 455888999999999999
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
+.|++-|+.+++...-++-.-++++.+++..+++..|+++..+.++.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999888999999999999999999999988887764
No 194
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.19 E-value=6.8e-11 Score=82.78 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=71.8
Q ss_pred CCCchHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837 68 SGEYTKPLEYIDKVVLVFSPA--CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 145 (409)
+++|++|+.++++ ++...|. +..+++.+|.|++..|++++|+..+++ ++.+|.+...++.+|.++..+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k-~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEK-LLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHH-HHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHH-HHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5789999999999 7888774 567788899999999999999999999 88889888999999999999999999999
Q ss_pred HHHHH
Q 043837 146 HFQKG 150 (409)
Q Consensus 146 ~~~~a 150 (409)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 195
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.18 E-value=7.8e-10 Score=88.80 Aligned_cols=106 Identities=12% Similarity=0.117 Sum_probs=86.0
Q ss_pred cCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 043837 104 KDYASAISETGYLLKEDENN--LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181 (409)
Q Consensus 104 ~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 181 (409)
..+..+...+...++..+.. ...++.+|.++...+++++|+..|++++.+.|++.....++.+++.++...
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~------- 85 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN------- 85 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-------
Confidence 34566666666665555554 557799999999999999999999999999877554445889999999888
Q ss_pred hcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC
Q 043837 182 SKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG 222 (409)
Q Consensus 182 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~ 222 (409)
|++++|+..+++++.+.|. ....+.++|.++...+
T Consensus 86 --g~~~eA~~~~~~Al~~~~~----~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 86 --GEHTKALEYYFQALERNPF----LPQALNNMAVICHYRG 120 (168)
T ss_pred --CCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHhh
Confidence 9999999999999999998 5667888888888444
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.18 E-value=1.3e-10 Score=76.89 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837 212 LGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 212 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 276 (409)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788899999999999999999999999999999999999999999999999999999999874
No 197
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.18 E-value=1.6e-07 Score=80.02 Aligned_cols=226 Identities=30% Similarity=0.332 Sum_probs=180.0
Q ss_pred CChHHHhHHHHHHHHHHHH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHccCHHHHH
Q 043837 36 CRVKARNSVAEKELSQLLQ---AQSTFDSALKLYDSGEYTKPLEYIDKVVLV--FSPACSKAKLLKVKLLLAAKDYASAI 110 (409)
Q Consensus 36 g~~~~A~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~ 110 (409)
+.+..+...+...+..... .......+..+...+++..++..+.. ... ..+.....+...+.++...+++..++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK-ALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHH-HHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4555555555555554333 45667777788888999999999887 554 67788899999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHH
Q 043837 111 SETGYLLKEDENNLEALLHRGR-AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVA 189 (409)
Q Consensus 111 ~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A 189 (409)
..+..++...+.........+. ++...++++.|+..+.+++..+|........+......+... ++++.|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a 186 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL---------GRYEEA 186 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh---------cCHHHH
Confidence 9999999988887666666666 899999999999999999887763111111344444444444 899999
Q ss_pred HHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837 190 VEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAA 269 (409)
Q Consensus 190 ~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 269 (409)
+..+.+++...+.. ....+..++.++...+++..|+..+..++...|.....+..++..+...+.++++...+.+++
T Consensus 187 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 187 LELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999998872 255789999999999999999999999999999877788888888887778999999999999
Q ss_pred hhCCC
Q 043837 270 QQSPQ 274 (409)
Q Consensus 270 ~~~p~ 274 (409)
...|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 99987
No 198
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.1e-08 Score=80.30 Aligned_cols=273 Identities=19% Similarity=0.125 Sum_probs=183.4
Q ss_pred HHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHH
Q 043837 30 SVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASA 109 (409)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 109 (409)
+-++-+|+|..++.................-.+..++..|.+...+.-... .......+...++.....-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~----~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKE----GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccc----ccCChHHHHHHHHHHhhCcchhHHH
Confidence 334556777777666665544434455556677778888877776665533 1122334455556665555665555
Q ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH
Q 043837 110 ISETGYLLKED--ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLR 187 (409)
Q Consensus 110 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (409)
+..+.+.+... ..+...+..-+.+|..-+++++|+........+ + +...-..+...+ .+.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-----E---~~Al~VqI~lk~---------~r~d 154 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-----E---AAALNVQILLKM---------HRFD 154 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-----H---HHHHHHHHHHHH---------HHHH
Confidence 55555544432 233345667788999999999999988873322 2 232233344444 7888
Q ss_pred HHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837 188 VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE 263 (409)
Q Consensus 188 ~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 263 (409)
-|...++++.+++.+. .+..||.++.+ -.++.+|.-+|++.-+..|..+..+...+.|++.+++|++|..
T Consensus 155 ~A~~~lk~mq~ided~------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 155 LAEKELKKMQQIDEDA------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHccchHH------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 8999999999988763 34445555544 3468899999999999888889999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCC-CCCchHHHHHHHHHH
Q 043837 264 DLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDK-NVDNREEAENKFREI 342 (409)
Q Consensus 264 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~-~~~~~~~a~~~~~~i 342 (409)
.++.++..++++++....+..+-..+.+ ..++...+-...+..||.. ......+.+..|.++
T Consensus 229 lL~eaL~kd~~dpetL~Nliv~a~~~Gk-----------------d~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl 291 (299)
T KOG3081|consen 229 LLEEALDKDAKDPETLANLIVLALHLGK-----------------DAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRL 291 (299)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhCC-----------------ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999988888777666654 3344444444455556654 333345556666666
Q ss_pred HHHH
Q 043837 343 AAAY 346 (409)
Q Consensus 343 ~~ay 346 (409)
..-|
T Consensus 292 ~~qy 295 (299)
T KOG3081|consen 292 VLQY 295 (299)
T ss_pred HHHh
Confidence 5544
No 199
>PRK11906 transcriptional regulator; Provisional
Probab=99.17 E-value=5e-09 Score=93.33 Aligned_cols=159 Identities=12% Similarity=0.017 Sum_probs=109.8
Q ss_pred HHHHHHHHHcc---CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHccCCCcH
Q 043837 94 LLKVKLLLAAK---DYASAISETGYLL---KEDENNLEALLHRGRAYYYL---------ADHDVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 94 ~~~a~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~~ 158 (409)
+.+|...+..+ ....|+.+|.+++ .++|....+|..++.|++.. .+..+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 55566554443 3467778888888 88888888888888877654 134466777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 238 (409)
. ++..+|.+.... ++++.|+..|++|+.++|+ .+.+++..|.+..-.|+.++|++.++++++++
T Consensus 339 ~---a~~~~g~~~~~~---------~~~~~a~~~f~rA~~L~Pn----~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 339 K---ILAIMGLITGLS---------GQAKVSHILFEQAKIHSTD----IASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred H---HHHHHHHHHHhh---------cchhhHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 7 777777776666 7777777777777777777 66677777777777777777777777777777
Q ss_pred hhcHHHHHHHHHH-HHhccCHHHHHHHHHHH
Q 043837 239 EELIEALVQRGEA-KLLTEDWEGAVEDLKSA 268 (409)
Q Consensus 239 p~~~~~~~~la~~-~~~~~~~~~A~~~~~~a 268 (409)
|.-..+-...-.+ .+-....++|+..|-+-
T Consensus 403 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred chhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 7655544443333 34445566666666543
No 200
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=7.5e-10 Score=79.58 Aligned_cols=97 Identities=33% Similarity=0.470 Sum_probs=63.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 172 (409)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+.. .+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK---AYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh---HHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666666666654 5566666655
Q ss_pred HHHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837 173 KTKSAEDNVSKGKLRVAVEDFKAALALDP 201 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 201 (409)
.. +++++|...+.++++..|
T Consensus 80 ~~---------~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KL---------GKYEEALEAYEKALELDP 99 (100)
T ss_pred HH---------HhHHHHHHHHHHHHccCC
Confidence 55 666666666666666554
No 201
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.16 E-value=2e-09 Score=93.97 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=123.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH---HHHHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDE--N----NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS---ELKKA 163 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 163 (409)
+...|.+|...+++++|.++|.++....- + -...+...+.++... ++++|+.+|++++.+.-... .....
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34457778888888888888888866532 1 123566677777666 99999999999998643222 22334
Q ss_pred HHHHHHHHHHHHHHhhHHhc-CCHHHHHHHHHHHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-
Q 043837 164 YFALKNLLKKTKSAEDNVSK-GKLRVAVEDFKAALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE- 239 (409)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p- 239 (409)
+..++.+ +... +++++|+++|++|+++.. +.+.....++..+|.++..+++|++|+..|+++....-
T Consensus 117 ~~~lA~~---------ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 117 LKELAEI---------YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHH---------HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHH---------HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 4444444 3444 799999999999998643 22233567888999999999999999999999987421
Q ss_pred ------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 240 ------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 240 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
.-...++..+.|++..||+..|...+++....+|....
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 12245677888999999999999999999999986543
No 202
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.15 E-value=1.3e-09 Score=87.79 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837 86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162 (409)
Q Consensus 86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (409)
.+....+++.+|.++...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+.+++...|++..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 107 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS--- 107 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---
Confidence 34567778889999999999999999999998877653 457889999999999999999999999999888877
Q ss_pred HHHHHHHHHHHH
Q 043837 163 AYFALKNLLKKT 174 (409)
Q Consensus 163 ~~~~l~~~~~~~ 174 (409)
.+..++.++...
T Consensus 108 ~~~~lg~~~~~~ 119 (172)
T PRK02603 108 ALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHHHHHc
Confidence 777777777666
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.15 E-value=4.6e-08 Score=80.40 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---AL 127 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 127 (409)
.+..+|..+...+..|+|++|+..|+. +....|.. ..+.+.++..+++.++++.|+...++-+.+.|+++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~-l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEA-LDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 567889999999999999999999998 77776654 678899999999999999999999999999988654 67
Q ss_pred HHHHHHHHhcC--------ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837 128 LHRGRAYYYLA--------DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL 199 (409)
Q Consensus 128 ~~l~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 199 (409)
+..|.+++..= -..+|+..|+..+...|++.-...+...+..+-..+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L------------------------- 166 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL------------------------- 166 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH-------------------------
Confidence 78888876542 234788889999999999865443444433332222
Q ss_pred CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
+..-..+|..|.+.|.+..|+.-++.+++..|+ ..+++..+..+|..+|-.++|...- ++|..+
T Consensus 167 --------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N 233 (254)
T COG4105 167 --------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGAN 233 (254)
T ss_pred --------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhc
Confidence 223344556666666666666666666665443 2455566666666666666665543 334433
No 204
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.8e-10 Score=90.38 Aligned_cols=74 Identities=36% Similarity=0.616 Sum_probs=66.0
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCccccc
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETG 368 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~~~~ 368 (409)
.-|-|++||+++.++.+|||++||+|..++||||.+.. ...++.+..|.+||+.|+|+..|+.|.....|+.|+
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq 171 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQ 171 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCcc
Confidence 35789999999999999999999999999999997665 567889999999999999999999999977766544
No 205
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=1.3e-06 Score=80.24 Aligned_cols=191 Identities=11% Similarity=0.089 Sum_probs=120.0
Q ss_pred CCchHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCC
Q 043837 69 GEYTKPLEYIDKVVLVFSPAC-----SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN----LEALLHRGRAYYYLAD 139 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~ 139 (409)
++..+-+..|.+++...+|.. ...|...|..|...|+.+.|...|+++++..-.. ..+|..-|..-....+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 445555555555555555532 2455566666666666666666666666543221 2345555555555566
Q ss_pred hHHHHHHHHHHHccCCCcHH----------------HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837 140 HDVAQRHFQKGLRLDPEHSE----------------LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH 203 (409)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 203 (409)
++.|++.++.|... |..+. ..++|..++...... |-++.....|++++++---
T Consensus 441 ~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~---------gtfestk~vYdriidLria- 509 (835)
T KOG2047|consen 441 FEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL---------GTFESTKAVYDRIIDLRIA- 509 (835)
T ss_pred HHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHhcC-
Confidence 66666666665543 11100 112333344444444 7788888888898887655
Q ss_pred ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--hhcHHHHHH---HHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 204 TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--EELIEALVQ---RGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 204 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~---la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
.+.+-.|.|..+....-++++.+.|++.+.+. |.-.++|.. .....+.--..+.|...|++|++..|
T Consensus 510 ---TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 510 ---TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred ---CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 55588899999999999999999999999875 444555543 23333344578999999999999887
No 206
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.14 E-value=1.8e-10 Score=76.28 Aligned_cols=64 Identities=31% Similarity=0.426 Sum_probs=46.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837 95 LKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (409)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777653
No 207
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=1.1e-09 Score=78.71 Aligned_cols=99 Identities=31% Similarity=0.444 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (409)
++..++.++... +++++|+..++++++..|. ...++..+|.++...+++++|+..+++++...|.+.
T Consensus 2 ~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKL---------GDYDEALEYYEKALELDPD----NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHH---------hcHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 355566666555 9999999999999999998 557899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
.++..++.++...+++++|...+.++++..|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999988874
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=99.14 E-value=2.1e-09 Score=82.28 Aligned_cols=104 Identities=10% Similarity=0.152 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA 133 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 133 (409)
.....|..|..++.+|++++|..+|.- +...+|.++..++.+|.|+..+++|++|+..|..+..++++++...+..|.|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~-L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRF-LCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 456779999999999999999999977 7778999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
|..+|+.+.|+.+|..++. .|.+..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 9999999999999999998 355443
No 209
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.13 E-value=1.6e-10 Score=73.55 Aligned_cols=55 Identities=65% Similarity=1.020 Sum_probs=51.1
Q ss_pred hhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 043837 296 DWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD 351 (409)
Q Consensus 296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d 351 (409)
++|++||+...++.++|+++|+++++.+|||+.... ..+...|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999998765 6788999999999999986
No 210
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.13 E-value=1.8e-07 Score=79.68 Aligned_cols=221 Identities=30% Similarity=0.388 Sum_probs=185.9
Q ss_pred ChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHhHHHHHHHH---HHHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837 3 HYSEALDDLNTAIEADPT--LSEAYFHRGSVLRQLCRVKARNSVAEKELS---QLLQAQSTFDSALKLYDSGEYTKPLEY 77 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~A~~~ 77 (409)
.+..++..+..++...+. ........+..+...+++..+...+...+. ........+..+......+++..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 456677888888888876 478888999999999999999888888774 445556667778888888899999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 043837 78 IDKVVLVFSPACSKAKLLKVK-LLLAAKDYASAISETGYLLKEDE---NNLEALLHRGRAYYYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 78 ~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 153 (409)
+.. +....+........... ++...++++.|+..+.+++..+| .....+..++..+...++++.|+..+.+++..
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEK-ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHH-HHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 998 77776776566666666 89999999999999999998777 35566777777788999999999999999999
Q ss_pred CCC-cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837 154 DPE-HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232 (409)
Q Consensus 154 ~p~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 232 (409)
.+. ... .+..++..+... +++..|+..+..++...|. ....+..++..+...+.++++...+.
T Consensus 197 ~~~~~~~---~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 197 NPDDDAE---ALLNLGLLYLKL---------GKYEEALEYYEKALELDPD----NAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred CcccchH---HHHHhhHHHHHc---------ccHHHHHHHHHHHHhhCcc----cHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 998 465 788888888777 8999999999999999998 56677888888887778999999999
Q ss_pred HHHhcChh
Q 043837 233 EALNINEE 240 (409)
Q Consensus 233 ~al~~~p~ 240 (409)
+++...|.
T Consensus 261 ~~~~~~~~ 268 (291)
T COG0457 261 KALELDPD 268 (291)
T ss_pred HHHHhCcc
Confidence 99999887
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.12 E-value=2.8e-09 Score=90.80 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=95.7
Q ss_pred HHHHHHHHHHH-HhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHH
Q 043837 55 AQSTFDSALKL-YDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN---NLEAL 127 (409)
Q Consensus 55 ~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 127 (409)
....|..|..+ +..++|++|+..|.. .+...|++ +.+++.+|.+|+..|++++|+..|+++++.+|+ .++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~-fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQN-FVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 36678899987 667999999999999 88889987 589999999999999999999999999998887 47789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 128 LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 128 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
+.+|.++..+|++++|+..|+++++..|++...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999998763
No 212
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.12 E-value=7.9e-09 Score=96.79 Aligned_cols=142 Identities=18% Similarity=0.074 Sum_probs=111.4
Q ss_pred hCCCcHHH--HHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 043837 85 FSPACSKA--KLLKVKLLLAAKD---YASAISETGYLLKEDENNLEALLHRGRAYYYLA--------DHDVAQRHFQKGL 151 (409)
Q Consensus 85 ~~p~~~~~--~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al 151 (409)
..|.+..+ ++.+|..++...+ ...|+.+|+++++++|+++.++-.++.++.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34555544 4556766665544 789999999999999999999998888776542 2345566666666
Q ss_pred cc--CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837 152 RL--DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS 229 (409)
Q Consensus 152 ~~--~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 229 (409)
.+ +|.++. ++..++...... |++++|...+++++.++|+ ..+|..+|.++...|++++|+.
T Consensus 412 al~~~~~~~~---~~~ala~~~~~~---------g~~~~A~~~l~rAl~L~ps-----~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 412 ALPELNVLPR---IYEILAVQALVK---------GKTDEAYQAINKAIDLEMS-----WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hcccCcCChH---HHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCHHHHHH
Confidence 64 555555 666666665555 9999999999999999985 4689999999999999999999
Q ss_pred HHHHHHhcChhcHH
Q 043837 230 SCTEALNINEELIE 243 (409)
Q Consensus 230 ~~~~al~~~p~~~~ 243 (409)
.|++|+.++|.++.
T Consensus 475 ~~~~A~~L~P~~pt 488 (517)
T PRK10153 475 AYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHhcCCCCch
Confidence 99999999998875
No 213
>PHA03102 Small T antigen; Reviewed
Probab=99.11 E-value=1.5e-10 Score=88.04 Aligned_cols=66 Identities=30% Similarity=0.572 Sum_probs=58.7
Q ss_pred hhhhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCc
Q 043837 294 RKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDI 364 (409)
Q Consensus 294 ~~~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~ 364 (409)
....+++|||++++ +..+|+++|+++++.+|||+... +++|++|++||++|+|+.+|.+||.+...
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 35688999999999 99999999999999999999643 35899999999999999999999986543
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=99.11 E-value=2.2e-09 Score=82.14 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=93.9
Q ss_pred hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccC
Q 043837 178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTED 257 (409)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 257 (409)
-.++..|++++|...|+-....+|. +...+..||.|+..+++|++|+..|..+..++++++...+..|.|++.+|+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3445559999999999999999998 677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 258 WEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 258 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
.+.|+.+|+.+++ .|.+..++..-......++
T Consensus 121 ~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 121 AAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 9999999999999 5776666555444444443
No 215
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.10 E-value=8.7e-08 Score=94.60 Aligned_cols=214 Identities=13% Similarity=0.167 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--HHHHHHHHHHHHHHh----CCCchHHHHHHH
Q 043837 6 EALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--LQAQSTFDSALKLYD----SGEYTKPLEYID 79 (409)
Q Consensus 6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~a~~~~~----~~~~~~A~~~~~ 79 (409)
+..+.|++.+..+|+.+-.|+.....++++++.++|...++++|... .......+.-..++. -|.-+...+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 45678999999999999999999999999999999999999998854 122222222222222 244556666777
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--c
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE--H 157 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~ 157 (409)
+ +.+.+ +...++..|.-+|...+++++|.++++..++...+....|..++..++.+++-+.|...+.+|++.-|. +
T Consensus 1522 R-Acqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1522 R-ACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred H-HHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 7 44433 335678888888888888888998888888888877888888888888888888888888888888887 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
.. .....+.+.... |+.+.+...|+..+.-.|. ...+|.-+...-.+.++.+.+...|++++.+
T Consensus 1600 v~---~IskfAqLEFk~---------GDaeRGRtlfEgll~ayPK----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1600 VE---FISKFAQLEFKY---------GDAERGRTLFEGLLSAYPK----RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HH---HHHHHHHHHhhc---------CCchhhHHHHHHHHhhCcc----chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 43 445555555444 8888888888888888887 6668888888888888888888888888775
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.09 E-value=4.8e-09 Score=89.37 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=96.5
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837 90 SKAKLLKVKLL-LAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165 (409)
Q Consensus 90 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 165 (409)
....+..|..+ +..++|++|+..|+..++.+|++ +.+++++|.+|+..|++++|+..|++++...|+++....++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888876 56799999999999999999998 579999999999999999999999999999999888777999
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH 203 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 203 (409)
.++.++..+ |++++|+..|+++++..|++
T Consensus 222 klg~~~~~~---------g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDK---------GDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHHHCcCC
Confidence 999999888 99999999999999999984
No 217
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=8.6e-09 Score=80.43 Aligned_cols=106 Identities=22% Similarity=0.281 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 043837 53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC-----SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEAL 127 (409)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 127 (409)
..+...-..+..++..|+|++|..-|.. ++...|.. ...|.++|.++++++.++.|+..+.++|+++|.+..++
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~-Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQE-ALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHH-HHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 3455566788899999999999999999 88888864 45788899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 128 LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 128 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..++.+|..+..+++|+..|++++..+|....
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999999999999999887
No 218
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.04 E-value=1.3e-08 Score=75.14 Aligned_cols=101 Identities=27% Similarity=0.288 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205 (409)
Q Consensus 126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 205 (409)
+++.+|.++-.+|+.++|+.+|++++....+......++..++..+..+ |++++|+..+++++...|+++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L---------G~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL---------GRYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHCCCccc
Confidence 4566666666677777777777776665555444444666666666666 6666666666666666565433
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
+..+...++.++...|++++|+..+-.++.
T Consensus 74 -~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 -NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444555666677777777777777666554
No 219
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=2.2e-06 Score=78.67 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=166.7
Q ss_pred CChHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHcCChHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhCCC
Q 043837 2 KHYSEALDDLNTAIE-ADPTL-----SEAYFHRGSVLRQLCRVKARNSVAEKELSQ-----LLQAQSTFDSALKLYDSGE 70 (409)
Q Consensus 2 g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~ 70 (409)
|+..+-+..|..|+. .+|.- ...|...|..|...|+.+.|...+.++... ...+..+..-|..-++..+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 456777888888885 57743 467999999999999999999999998773 2345666777777888899
Q ss_pred chHHHHHHHHHHHhhCC------------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837 71 YTKPLEYIDKVVLVFSP------------------ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR 132 (409)
Q Consensus 71 ~~~A~~~~~~~~~~~~p------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 132 (409)
++.|+.+..+ +...-. .+..+|...+......|-++.....|++++++---.|....+.|.
T Consensus 441 ~~~Al~lm~~-A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 441 FEAALKLMRR-ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred HHHHHHHHHh-hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999887 332211 235677788888888999999999999999998888999999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHH
Q 043837 133 AYYYLADHDVAQRHFQKGLRLDPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHL 210 (409)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 210 (409)
.+....-+++|.+.|++.+.+.+- -.+ +|...-... ..-+..-+.+.|..+|++|++.+|. ...-.+
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~d---iW~tYLtkf------i~rygg~klEraRdLFEqaL~~Cpp--~~aKti 588 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYD---IWNTYLTKF------IKRYGGTKLERARDLFEQALDGCPP--EHAKTI 588 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHH---HHHHHHHHH------HHHhcCCCHHHHHHHHHHHHhcCCH--HHHHHH
Confidence 999999999999999999998653 333 333322211 1123336789999999999998883 223445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 211 YLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 211 ~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
+...+..--.-|--..|+..|++|..
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55666666666777777777777654
No 220
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.00 E-value=5.6e-10 Score=104.13 Aligned_cols=66 Identities=42% Similarity=0.768 Sum_probs=61.4
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.+||++||+.++++..+|+++|+++++++|||+... ..++.+|++|++||++|+||.+|..||...
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 589999999999999999999999999999999766 577889999999999999999999999853
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=1.8e-07 Score=74.23 Aligned_cols=217 Identities=19% Similarity=0.134 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837 21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL 99 (409)
Q Consensus 21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~ 99 (409)
.+..++.+|..|-.+|-+.-|.-.+.+++...+. +...--.++-+...|+|+.|.+.|+. +++++|....+..++|..
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds-~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS-VLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhh-HhccCCcchHHHhcccee
Confidence 4567788899998888888888888888875433 44444577778888999999999998 999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHccCCCcHHHHHHHHHHHHHHHHHHHHh
Q 043837 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHF-QKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178 (409)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~ 178 (409)
++--|++.-|.+.+.+--+.+|++|---.++-.+-.+. ++.+|...+ +++-..+.+... |..+...+
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-dP~~A~tnL~qR~~~~d~e~WG----~~iV~~yL------- 210 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-DPKQAKTNLKQRAEKSDKEQWG----WNIVEFYL------- 210 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-CHHHHHHHHHHHHHhccHhhhh----HHHHHHHH-------
Confidence 99999999999999999999999886433333333333 455665554 444445444332 33333222
Q ss_pred hHHhcCCHHHHHHHHHHHHccCCCCc---cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh----cHHHHHHHHHH
Q 043837 179 DNVSKGKLRVAVEDFKAALALDPNHT---AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE----LIEALVQRGEA 251 (409)
Q Consensus 179 ~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~ 251 (409)
|+..+ ...++++..-..++. ....+.++.+|..+...|+.++|...|+-++..+-- +--+.+.++.+
T Consensus 211 -----gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l 284 (297)
T COG4785 211 -----GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLL 284 (297)
T ss_pred -----hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 22111 112222222222221 124678999999999999999999999999876542 22344445554
Q ss_pred HHhcc
Q 043837 252 KLLTE 256 (409)
Q Consensus 252 ~~~~~ 256 (409)
.....
T Consensus 285 ~q~~~ 289 (297)
T COG4785 285 GQDQD 289 (297)
T ss_pred ccccc
Confidence 44443
No 222
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.00 E-value=1.3e-08 Score=91.09 Aligned_cols=128 Identities=20% Similarity=0.140 Sum_probs=109.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV 208 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 208 (409)
.+-.++...++++.|+..+++..+.+|+ +...++.++... ++-.+|+..+.+++...|. +.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe------v~~~LA~v~l~~---------~~E~~AI~ll~~aL~~~p~----d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE------VAVLLARVYLLM---------NEEVEAIRLLNEALKENPQ----DS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc------HHHHHHHHHHhc---------CcHHHHHHHHHHHHHhCCC----CH
Confidence 4455666678999999999999998886 344566666655 8889999999999999998 68
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
.++...+..+...++++.|+...++++++.|++...|+.|+.+|..+|++++|+..+..+--..+++
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999998887554443333
No 223
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.98 E-value=1.2e-09 Score=92.25 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=71.2
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH
Q 043837 132 RAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY 211 (409)
Q Consensus 132 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 211 (409)
.-.+..|.++.|+++|..++.++|.... .+...+.++..+ ++...|+..+..+++++|+ .+.-|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~---l~~kr~sv~lkl---------~kp~~airD~d~A~ein~D----sa~~y 185 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAI---LYAKRASVFLKL---------KKPNAAIRDCDFAIEINPD----SAKGY 185 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhh---hcccccceeeec---------cCCchhhhhhhhhhccCcc----ccccc
Confidence 3345567788888888888888887776 666666666666 8888888888888888888 55677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837 212 LGLCKVLVKLGRGKDALSSCTEALNIN 238 (409)
Q Consensus 212 ~~la~~~~~~~~~~~A~~~~~~al~~~ 238 (409)
-.++.+...+|+|++|..++..+.+++
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 788888889999999999999998873
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.97 E-value=1.7e-07 Score=77.11 Aligned_cols=199 Identities=20% Similarity=0.175 Sum_probs=141.2
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 164 (409)
..+..++.-|...++.|+|++|++.|+.+....|.. ..+.+.++.++++.+++++|+..+++-+.+.|+++++.-++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 357889999999999999999999999999998875 45789999999999999999999999999999998866666
Q ss_pred HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (409)
+..+.++... ....--+..-..+|+..++..+...|+++- ...+...+. .+. ..-..-
T Consensus 112 YlkgLs~~~~-i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-a~dA~~~i~--------------~~~------d~LA~~ 169 (254)
T COG4105 112 YLKGLSYFFQ-IDDVTRDQSAARAAFAAFKELVQRYPNSRY-APDAKARIV--------------KLN------DALAGH 169 (254)
T ss_pred HHHHHHHhcc-CCccccCHHHHHHHHHHHHHHHHHCCCCcc-hhhHHHHHH--------------HHH------HHHHHH
Confidence 6666653221 000001113345778888888888888432 111111111 111 112233
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh---cch-hhhhhhhcccccCC
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM---SKR-KDWYKILGVSKTAS 308 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~-~~~~~~l~~~~~~~ 308 (409)
-..+|..|.+.|.+..|+.-++.+++..|+.+.+.+.|......... ... ...-++|+.....+
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 35678899999999999999999999999888877777666655443 222 34556666554443
No 225
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=2.2e-07 Score=91.85 Aligned_cols=200 Identities=13% Similarity=0.079 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHH----HHHHHHHHHHhcCChHHHHHHH
Q 043837 73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-DENNLE----ALLHRGRAYYYLADHDVAQRHF 147 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~----~~~~l~~~~~~~~~~~~A~~~~ 147 (409)
+..+-+++ .+..+|++.-.|......+++.++.++|.+..++||.. ++...+ .|..+-.....-|.-+.-.+.|
T Consensus 1442 esaeDfer-lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFER-LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred cCHHHHHH-HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34455556 67789999999999999999999999999999999974 444333 3333333333345666777888
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837 148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227 (409)
Q Consensus 148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 227 (409)
++|.+..... .+|..|..+|... +++++|.++|+..++...+ ...+|..++..++...+-+.|
T Consensus 1521 eRAcqycd~~----~V~~~L~~iy~k~---------ek~~~A~ell~~m~KKF~q----~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1521 ERACQYCDAY----TVHLKLLGIYEKS---------EKNDEADELLRLMLKKFGQ----TRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred HHHHHhcchH----HHHHHHHHHHHHh---------hcchhHHHHHHHHHHHhcc----hhhHHHHHHHHHhcccHHHHH
Confidence 8888765432 2788888899888 9999999999999998886 677999999999999999999
Q ss_pred HHHHHHHHhcChh--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 228 LSSCTEALNINEE--LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 228 ~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
...+.+|++.-|. +.+.....|.+-++.|+.+.+...|+-.+.-+|...++|..+........
T Consensus 1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence 9999999999887 88888999999999999999999999999999999999988877765543
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.96 E-value=2.3e-08 Score=74.96 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=92.4
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH---HHHHHHHHH
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI---EALVQRGEA 251 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~ 251 (409)
..|..+++.|+|++|++.|+.+....|..+. ...+.+.++.+|++.+++++|+..+++-++++|+++ .+++.+|.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3455666669999999999999999997665 678999999999999999999999999999999774 688999999
Q ss_pred HHhccC---------------HHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 252 KLLTED---------------WEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 252 ~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
++.+.. ..+|...|++.+...|++..+...
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 999877 889999999999999998765543
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.96 E-value=2.1e-08 Score=75.15 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA---CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---AL 127 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 127 (409)
.....|..|...+..|+|++|++.|+. +....|. ...+.+.++.+|+..+++++|+..+++.++++|+++. ++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~-L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEA-LDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 356778999999999999999999998 7776665 5688999999999999999999999999999998754 78
Q ss_pred HHHHHHHHhcCC---------------hHHHHHHHHHHHccCCCcHHH
Q 043837 128 LHRGRAYYYLAD---------------HDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 128 ~~l~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 160 (409)
+.+|.+++.+.. ..+|...|++.+...|++...
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999876 788999999999999988753
No 228
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.94 E-value=6e-09 Score=70.77 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=60.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837 215 CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM 283 (409)
Q Consensus 215 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 283 (409)
..+|...+++++|++++++++.++|+++..+..+|.++..+|++.+|++.++++++..|+++.+.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999998877655443
No 229
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.94 E-value=3.1e-09 Score=71.03 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=46.0
Q ss_pred HHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837 219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM 283 (409)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 283 (409)
+..|++++|+..|++++..+|++..+++.+|.+++..|++++|...+++++..+|+++.++..+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45677777777777777777777777777777777777777777777777777777666555444
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.92 E-value=3.8e-07 Score=77.98 Aligned_cols=262 Identities=16% Similarity=0.090 Sum_probs=180.5
Q ss_pred CChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCc
Q 043837 2 KHYSEALDDLNTAIEADPTLS---EAYFHRGSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDSGEY 71 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~~~ 71 (409)
.++++|+..+.+.|..-.+.. ..+-.+..+...+|.+++++...-..+... ...+.+.+.+...-+.-++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888888887543322 234445678889999998876665554422 2233344455555555567
Q ss_pred hHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCh
Q 043837 72 TKPLEYIDKVVLVFSPAC-----SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADH 140 (409)
Q Consensus 72 ~~A~~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~ 140 (409)
.+++.+-.. .+...... ..+...++..+.-++.++++++.|+++++...++. .++..+|..|..+.++
T Consensus 100 ~kt~~y~k~-~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 100 HKTISYCKT-CLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhHHHHHHH-HhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 777776654 44443222 35677799999999999999999999998754432 3678999999999999
Q ss_pred HHHHHHHHHHHccCCCc----HH---HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC--CCccchHHHH
Q 043837 141 DVAQRHFQKGLRLDPEH----SE---LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP--NHTAHNVHLY 211 (409)
Q Consensus 141 ~~A~~~~~~al~~~p~~----~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~ 211 (409)
++|+.+..+|.++.... .. -..+++.++..+..+ |..-.|.++.+++.++.- .+....+...
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~---------G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL---------GRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh---------cccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999998864321 11 112445555555555 999999999999987543 3333366778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHH-----HHHHHHHHHhhCC
Q 043837 212 LGLCKVLVKLGRGKDALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEG-----AVEDLKSAAQQSP 273 (409)
Q Consensus 212 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~-----A~~~~~~al~~~p 273 (409)
.-+|.+|...|+.+.|..-|+.|..... ....++...|.+.....-..+ |++.-++++++..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 8899999999999999999999986532 234555666666655444443 7777777776643
No 231
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2e-08 Score=84.62 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=97.7
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837 171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE 250 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 250 (409)
......++.+++.++|..|+..|.+.|+..-.++..++.+|.|+|.|.+.+|+|..|+..|.+++.++|.+..++++-|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34456688888889999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 251 AKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 251 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
|++.+.++.+|+.+.+..++++.+...
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999999999999888755443
No 232
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.90 E-value=6.2e-08 Score=86.91 Aligned_cols=121 Identities=23% Similarity=0.305 Sum_probs=104.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837 95 LKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174 (409)
Q Consensus 95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 174 (409)
.+..++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+.. .+...+..+...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---LLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhc
Confidence 3445566778999999999999998875 5667899999999999999999999999999876 666666666555
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 234 (409)
++++.|+.+.++++.+.|+ ....|..|+.+|..+|+++.|+..++.+
T Consensus 248 ---------~~~~lAL~iAk~av~lsP~----~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 ---------KKYELALEIAKKAVELSPS----EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ---------CCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999 7889999999999999999999877754
No 233
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.90 E-value=6.6e-09 Score=69.45 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=31.9
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..|++++|+..|++++..+|++..+++.++.+|...|++++|...+++++..+|+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 4455555555555555555555555555555555555555555555555555555444
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.90 E-value=3.8e-07 Score=70.59 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=125.9
Q ss_pred HHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHH
Q 043837 33 RQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISE 112 (409)
Q Consensus 33 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 112 (409)
.+.=+.+.+.....+.+...+.....+..+..+.+.|++.+|..+|.+.+......++..++.++...+..+++..|...
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 34445556666677777788888899999999999999999999999966667788999999999999999999999999
Q ss_pred HHHHHhhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHH
Q 043837 113 TGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAV 190 (409)
Q Consensus 113 ~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 190 (409)
++++.+.+|. .++....++.++..+|.+.+|...|+.++...|+.. .....+..+..+ |+..+|.
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~----ar~~Y~e~La~q---------gr~~ea~ 213 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ----ARIYYAEMLAKQ---------GRLREAN 213 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH----HHHHHHHHHHHh---------cchhHHH
Confidence 9999999886 577889999999999999999999999999999865 344445555554 7666666
Q ss_pred HHHHHHHc
Q 043837 191 EDFKAALA 198 (409)
Q Consensus 191 ~~~~~al~ 198 (409)
.-+..+.+
T Consensus 214 aq~~~v~d 221 (251)
T COG4700 214 AQYVAVVD 221 (251)
T ss_pred HHHHHHHH
Confidence 55554443
No 235
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.88 E-value=3.6e-06 Score=80.19 Aligned_cols=234 Identities=13% Similarity=0.078 Sum_probs=151.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
+++.+|+..+.+.++..|+...+....|.++.++|+.+ +|..+++.
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~---------------------------------ea~~~Le~- 68 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD---------------------------------EALKLLEA- 68 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch---------------------------------hHHHHHhh-
Confidence 35667777777777777777666666666666665544 44444443
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
.-...+++...+-.+-.||..++++++|..+|++++..+|+ .+.++.+-.+|.+.+.|.+=.+.--+..+..|.++-.
T Consensus 69 ~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy- 146 (932)
T KOG2053|consen 69 LYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY- 146 (932)
T ss_pred hccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch-
Confidence 44455667788888899999999999999999999999998 7777788888888887776555555555566776652
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH--hcC
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL--NIN 238 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~ 238 (409)
.|..+..+...+..-+.....--..-|....++.++.. +-.. ..++. ..-.++..++++++|...+..-+ .+.
T Consensus 147 -fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s--~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~ 222 (932)
T KOG2053|consen 147 -FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIES--EAEII-LYLLILELQGKYQEALEFLAITLAEKLT 222 (932)
T ss_pred -HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccch--HHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence 34444443333211111111112334555666666665 2211 22222 23356677888999999884332 334
Q ss_pred hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 239 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
+.+..........+..+++|.+-.+...+++...+++
T Consensus 223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 4455555566777788889999888888888888886
No 236
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.87 E-value=5.4e-09 Score=82.54 Aligned_cols=65 Identities=29% Similarity=0.463 Sum_probs=56.5
Q ss_pred hhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 296 DWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 296 ~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
+||++||+.+. .+..+|+++|++++..+|||+... .+..+...+..|++||++|+||.+|..|.-
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 68999999986 567999999999999999999543 233467789999999999999999999974
No 237
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.8e-09 Score=89.48 Aligned_cols=68 Identities=53% Similarity=0.905 Sum_probs=63.3
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
..++|.+|++.+.++..+|+++|+++++.+|||++......++.+|+.|++||++|+|+.+|..||..
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 46899999999999999999999999999999998876547999999999999999999999999984
No 238
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.85 E-value=9.3e-08 Score=70.65 Aligned_cols=98 Identities=23% Similarity=0.137 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh--
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE-- 240 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-- 240 (409)
+++.++.++... |+.++|+.+|++++....+.+. ...++..+|.++..+|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~---------G~~~~Ai~~Y~~Al~~gL~~~~-~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 3 ALYELAWAHDSL---------GREEEAIPLYRRALAAGLSGAD-RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred hHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 677788888887 9999999999999997665443 5779999999999999999999999999999888
Q ss_pred -cHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 241 -LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 241 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
+..+...++.++...|++++|++.+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788889999999999999999999987775
No 239
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.85 E-value=2.4e-06 Score=66.27 Aligned_cols=154 Identities=15% Similarity=0.097 Sum_probs=122.0
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCcHHHHHHHHHHHHHHHHHHHHh
Q 043837 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR-LDPEHSELKKAYFALKNLLKKTKSAE 178 (409)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~l~~~~~~~~~~~ 178 (409)
..+.=+.+..+....+.+.+-|. ..-.+.++.....+|++.+|..+|.+++. +..++.. .+..++.....+
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a---~lLglA~Aqfa~---- 137 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA---MLLGLAQAQFAI---- 137 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH---HHHHHHHHHHhh----
Confidence 33444666677777777777776 44578899999999999999999999987 4555665 667777777666
Q ss_pred hHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW 258 (409)
Q Consensus 179 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 258 (409)
+++..|...+++..+.+|... .+.....++.++...|++.+|...|+.++...|. +.+....+..+.++|+.
T Consensus 138 -----~~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 138 -----QEFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRL 209 (251)
T ss_pred -----ccHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence 999999999999999887644 4557788899999999999999999999998874 67788888999999988
Q ss_pred HHHHHHHHHHH
Q 043837 259 EGAVEDLKSAA 269 (409)
Q Consensus 259 ~~A~~~~~~al 269 (409)
.+|..-+....
T Consensus 210 ~ea~aq~~~v~ 220 (251)
T COG4700 210 REANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHHH
Confidence 88776554443
No 240
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.8e-09 Score=85.49 Aligned_cols=69 Identities=43% Similarity=0.751 Sum_probs=61.7
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCc
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDI 364 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~ 364 (409)
..+||.+|||.++++..+|.++|++++.++|||++.. ++..+.|+.|..||++|.|.+.|..||---|-
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~--~e~k~~F~~iAtayeilkd~e~rt~ydyaldh 100 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD--PESKKLFVKIATAYEILKDNETRTQYDYALDH 100 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC--chhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence 3689999999999999999999999999999999876 35558999999999999999999999875443
No 241
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=2.1e-08 Score=68.05 Aligned_cols=63 Identities=24% Similarity=0.434 Sum_probs=51.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 97 VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 97 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..+|...+++++|+.++++++.++|+++..+..+|.++..+|++.+|+..++++++..|++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 456777888888888888888888888888888888888888888888888888888887776
No 242
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.83 E-value=8.6e-09 Score=80.79 Aligned_cols=66 Identities=26% Similarity=0.519 Sum_probs=56.0
Q ss_pred hhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCC--chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 295 KDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVD--NREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 295 ~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~--~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
.+||++||+.+. .+..+++++|++++.++|||+... ++..+...+..|++||++|+||.+|..|.-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 478999999987 678999999999999999999754 223344567899999999999999999965
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.3e-08 Score=80.28 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=94.4
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL 254 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 254 (409)
+.++.++...+|..|+.+|.++|.++|. .+.+|.+.+.|++++++|+.+...+.++++++|+...+++.+|.+...
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~----~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPT----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCC----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3455555668999999999999999999 677999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHH
Q 043837 255 TEDWEGAVEDLKSAAQQS-----PQDMNIREALMRAEK 287 (409)
Q Consensus 255 ~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~ 287 (409)
...|++|+..++++..+. |.-.++...|..++.
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~ 128 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK 128 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence 999999999999997653 222456666666653
No 244
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.83 E-value=7.7e-09 Score=91.66 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=107.3
Q ss_pred HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837 174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL 253 (409)
Q Consensus 174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 253 (409)
..++..++..+.++.|+..|.++|+++|+ .+.++-+++.++++.+++..|+..+.++++++|....+|+..|.+..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpn----ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPN----CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCc----ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34577778889999999999999999999 77799999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 254 LTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 254 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
.++.+.+|+..|+....+.|+++.+...+..+....++
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887765
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.80 E-value=1.8e-07 Score=77.76 Aligned_cols=104 Identities=21% Similarity=0.158 Sum_probs=92.9
Q ss_pred HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc---HHHHHHHHHHHH
Q 043837 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL---IEALVQRGEAKL 253 (409)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 253 (409)
+..++..|+|..|...|..-++..|+++. .+.+++.||.+++.+|+++.|...|..+++-.|++ +++++.+|.+..
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 33444559999999999999999998776 78899999999999999999999999999987754 789999999999
Q ss_pred hccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 254 LTEDWEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 254 ~~~~~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
.+|+.++|...|+++++..|+.+.+...
T Consensus 227 ~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 227 RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999998775543
No 246
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.78 E-value=2.5e-07 Score=78.90 Aligned_cols=58 Identities=50% Similarity=0.691 Sum_probs=51.6
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCC------CchHHHHHHHHHHHHHHHhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV------DNREEAENKFREIAAAYEVLGD 351 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~------~~~~~a~~~~~~i~~ay~~l~d 351 (409)
..++|++|+++++++.++|+++|+++++++|||+.. +..+.+++++++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999953 2346789999999999999974
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=1.9e-07 Score=77.58 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=48.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN 169 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 169 (409)
.+..|.-++..|+|..|...|..-++..|++ +.++++||.+++.+|+++.|...|..+.+-.|+++.....++.++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3444444455555555555555555554442 3344555555555555555555555555544444443334444444
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
+...+ ++.++|...|+++++..|+
T Consensus 224 ~~~~l---------~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRL---------GNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHh---------cCHHHHHHHHHHHHHHCCC
Confidence 44444 4444444444444444444
No 248
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.5e-08 Score=88.77 Aligned_cols=66 Identities=39% Similarity=0.650 Sum_probs=62.7
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
+..|.|.+||+..+++.++||+.|+++|...||||+.. +.|++.|+.+..||++++|+++|..||.
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 36789999999999999999999999999999999984 7899999999999999999999999987
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.75 E-value=1.5e-06 Score=63.08 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHH
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL----EALLHRGRA 133 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~ 133 (409)
.-.+++.+...|+.+.|++.|.+ ++.+.|..+.+|.+++..+.-.|+.++|++.+++++++..... .++...|.+
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~q-al~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQ-ALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHH-HHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 34456666667777777777777 7777777777777777777777777777777777777654332 356677777
Q ss_pred HHhcCChHHHHHHHHHHHccCC
Q 043837 134 YYYLADHDVAQRHFQKGLRLDP 155 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p 155 (409)
|..+|+.+.|...|+.+-.+-.
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCC
Confidence 7777777777777777666543
No 250
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=8.6e-06 Score=77.01 Aligned_cols=254 Identities=19% Similarity=0.116 Sum_probs=154.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
|-.++|+.+|.++-..| .+-.+|...|.+++|.+.++.. .....-..+|+.|..+-..++.+.|+++|++.
T Consensus 814 gMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~-DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETK-DRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhc-cceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 34455555555543322 4445666666666665554432 11122234566666677777888888888763
Q ss_pred ---------HHhhCC----------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---------------------CC
Q 043837 82 ---------VLVFSP----------ACSKAKLLKVKLLLAAKDYASAISETGYLLKE---------------------DE 121 (409)
Q Consensus 82 ---------~~~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------~p 121 (409)
++..+| .+...|...|..+...|+.+.|+.+|..+-.. ..
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~es 964 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEES 964 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhc
Confidence 233334 34567778899999999999999999988542 23
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHc------cCCCcHHHHHHHHHHHHHHH--HHHHHhhHHh-cC-CHHHHHH
Q 043837 122 NNLEALLHRGRAYYYLADHDVAQRHFQKGLR------LDPEHSELKKAYFALKNLLK--KTKSAEDNVS-KG-KLRVAVE 191 (409)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~~l~~~~~--~~~~~~~~~~-~~-~~~~A~~ 191 (409)
.+..+.|.+|+.|...|++.+|+..|.+|-. +...+.- ..-+.+++..-. .+-.+..+++ .| +...|+.
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~-~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM-KDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence 4556889999999999999999998877644 3322221 011222221110 1111111221 13 5556665
Q ss_pred HHHHH------Hc-----------------cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHH------HHhcC----
Q 043837 192 DFKAA------LA-----------------LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE------ALNIN---- 238 (409)
Q Consensus 192 ~~~~a------l~-----------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------al~~~---- 238 (409)
+|.+| ++ ++|+. .+.++..-+..+....+|++|+..+-. |+.+.
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s---Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS---DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC---CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55533 11 33332 566777778888888889888876543 33331
Q ss_pred ------------h---------hcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837 239 ------------E---------ELIEALVQRGEAKLLTEDWEGAVEDLKSA 268 (409)
Q Consensus 239 ------------p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~a 268 (409)
| .-..++..+|.+..++|.|..|.+-|.+|
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1 12467788999999999999998887765
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.74 E-value=4.3e-07 Score=65.90 Aligned_cols=92 Identities=29% Similarity=0.339 Sum_probs=82.7
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh----cHHHHHHHHHHHHhc
Q 043837 180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE----LIEALVQRGEAKLLT 255 (409)
Q Consensus 180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~ 255 (409)
+.+.|+.+.|++.|.+++.+.|. .+.+|.|++.++.-+|+.++|+..+++++++... -..+++.+|.+|..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 33449999999999999999999 7889999999999999999999999999998543 356789999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCc
Q 043837 256 EDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 256 ~~~~~A~~~~~~al~~~p~~ 275 (409)
|+.+.|...|+.+-++....
T Consensus 129 g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred CchHHHHHhHHHHHHhCCHH
Confidence 99999999999999987654
No 252
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.74 E-value=0.00012 Score=63.72 Aligned_cols=263 Identities=17% Similarity=0.116 Sum_probs=174.7
Q ss_pred CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPT--LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ-STFDSALKLYDSGEYTKPLEYI 78 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~ 78 (409)
|+-..|.+.-.++-++-.. .+-+++.-+..-.-.|+++.|..-|+.++..++.-. ..--+-+..-+.|+.+.|+.+-
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yA 177 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYA 177 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence 3444555555555433222 334455557777888999999998888888654322 1222233445568888888888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CCCCHH---HHHHHHHHHHh-cCChHHHHHHHHHHH
Q 043837 79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE---DENNLE---ALLHRGRAYYY-LADHDVAQRHFQKGL 151 (409)
Q Consensus 79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~---~~~~l~~~~~~-~~~~~~A~~~~~~al 151 (409)
++ +....|..+.++...-...+..|+|+.|+++.+..... .++-.+ +-..-+..... .-+...|...-..++
T Consensus 178 e~-Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~ 256 (531)
T COG3898 178 ER-AAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN 256 (531)
T ss_pred HH-HHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 88 78888988888888888888999999999988766543 333221 22222222222 235778888888889
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
++.|+-.. .-..-+..+. ..|+..++-.+++.+.+..|.. . ++.+|....--+.++.-+
T Consensus 257 KL~pdlvP---aav~AAralf---------~d~~~rKg~~ilE~aWK~ePHP-----~----ia~lY~~ar~gdta~dRl 315 (531)
T COG3898 257 KLAPDLVP---AAVVAARALF---------RDGNLRKGSKILETAWKAEPHP-----D----IALLYVRARSGDTALDRL 315 (531)
T ss_pred hcCCccch---HHHHHHHHHH---------hccchhhhhhHHHHHHhcCCCh-----H----HHHHHHHhcCCCcHHHHH
Confidence 99888776 4444444443 4499999999999999998872 1 223333333334444444
Q ss_pred HHH---HhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 232 TEA---LNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 232 ~~a---l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
+++ ..+.|++.+....++..-+.-|++..|...-+.+....|... +...+..+..
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIee 373 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEE 373 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHh
Confidence 444 456889999999999999999999999999999998888743 3444444433
No 253
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.1e-07 Score=74.25 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=90.7
Q ss_pred HHHHhhHHhcCCHHHHHHHHHHHHcc--------CCCCcc------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 174 TKSAEDNVSKGKLRVAVEDFKAALAL--------DPNHTA------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 174 ~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
..+++.++..|+|.+|...|..|+.. .|.++. ....++.|.+.|++..++|-++++.+..++..+|
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 35677777779999999999988752 344432 2456789999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI 278 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 278 (409)
.+..+++.+|.++...=+..+|...|.++++++|.-..+
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999986443
No 254
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2e-05 Score=64.73 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=128.1
Q ss_pred HHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 043837 25 YFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEY-TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA 103 (409)
Q Consensus 25 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~ 103 (409)
...-|.+...+|+..+.+.-+..... ...+.+..++++.. +..+...++ ....+.+.++.|+.-.
T Consensus 125 R~lhAe~~~~lgnpqesLdRl~~L~~-------~V~~ii~~~e~~~~~ESsv~lW~K-------Rl~~Vmy~~~~~llG~ 190 (366)
T KOG2796|consen 125 RILHAELQQYLGNPQESLDRLHKLKT-------VVSKILANLEQGLAEESSIRLWRK-------RLGRVMYSMANCLLGM 190 (366)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHH-------HHHHHHHHHHHHHhcc
Confidence 34457777788887765544443333 33333444444444 444555554 2345677888888889
Q ss_pred cCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 043837 104 KDYASAISETGYLLKED-ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS 182 (409)
Q Consensus 104 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 182 (409)
++|.-.+..+.++++.+ |..+.....+|.+..+.|+.+.|..+++.+-+.... +...
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k----------L~~~------------ 248 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK----------LDGL------------ 248 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----------hhcc------------
Confidence 99999999999999888 556677778999999999988888888865321100 0000
Q ss_pred cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHH
Q 043837 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV 262 (409)
Q Consensus 183 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 262 (409)
.. ...+..+.+.++.-.+++..|...+.+++..+|.++.+..+.|.|+.-+|+..+|+
T Consensus 249 ------------------q~----~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 249 ------------------QG----KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred ------------------ch----hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 00 23355666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhCCCc
Q 043837 263 EDLKSAAQQSPQD 275 (409)
Q Consensus 263 ~~~~~al~~~p~~ 275 (409)
+.++.+++..|..
T Consensus 307 K~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 307 KQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHhccCCcc
Confidence 7777777777764
No 255
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.70 E-value=4e-08 Score=77.36 Aligned_cols=67 Identities=22% Similarity=0.413 Sum_probs=57.8
Q ss_pred hhhhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 294 RKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 294 ~~~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
..+||.++++.+.. +..+++++|++++..+|||+... ++..+...+..|++||++|+||.+|..|.-
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 45789999999884 57999999999999999999643 234567789999999999999999999984
No 256
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.69 E-value=4.5e-08 Score=77.47 Aligned_cols=67 Identities=27% Similarity=0.418 Sum_probs=56.3
Q ss_pred hhhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCCc----hHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 294 RKDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVDN----REEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 294 ~~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~~----~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
..+||++||+... .+..+++++|++++..+|||+.... +..+......|++||++|+||.+|..|.-
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3689999999985 5788999999999999999996542 22344556899999999999999999974
No 257
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.68 E-value=1e-07 Score=84.98 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=66.3
Q ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837 85 FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEA---LLHRGRAYYYLADHDVAQRHFQKGLRLD 154 (409)
Q Consensus 85 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~ 154 (409)
.+|+++.+++++|.+|...|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999999999999999865 9999999999999999999999999973
No 258
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.67 E-value=1e-07 Score=65.55 Aligned_cols=66 Identities=29% Similarity=0.360 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-------hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-------EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
.+.++.++|.+|..+|++++|+.+|++++++. |....++.++|.++..+|++++|++++++++++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 57789999999999999999999999999761 2346788999999999999999999999998763
No 259
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.5e-08 Score=76.86 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY 134 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 134 (409)
+...-+.+..++....|+.|+.+|.+ ++..+|..+..+.++|.|+++..+++.+...+.++++++|+.+..++.+|.+.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~r-aI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSR-AICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHH-HHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 33445567778888899999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHcc
Q 043837 135 YYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~ 153 (409)
.....+++|+..+.++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 9999999999999999764
No 260
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3.2e-05 Score=62.42 Aligned_cols=143 Identities=7% Similarity=0.029 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhc-CChHHHHHHHHHHHccCCCcHH---
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYL-ADHDVAQRHFQKGLRLDPEHSE--- 159 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~--- 159 (409)
...|...+.||.+ .+.++|+.++++++++..+-.. .+..+|.+|..- .++++|+.+|+++-+.......
T Consensus 74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 4455555666654 4999999999999998765332 456888888775 8999999999999876544322
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH---NVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
..+.+...+..-..+ ++|.+|+..|+++....-+++.. .-..++.-|.|++-..+.-.+...+++..+
T Consensus 153 ANKC~lKvA~yaa~l---------eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQL---------EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 233555555555566 99999999999998866554321 123455677888887888888888888888
Q ss_pred cChhcH
Q 043837 237 INEELI 242 (409)
Q Consensus 237 ~~p~~~ 242 (409)
++|...
T Consensus 224 ~dP~F~ 229 (288)
T KOG1586|consen 224 LDPAFT 229 (288)
T ss_pred cCCccc
Confidence 888654
No 261
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.66 E-value=4.3e-08 Score=85.48 Aligned_cols=75 Identities=33% Similarity=0.574 Sum_probs=69.0
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCC----CchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCcccccC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV----DNREEAENKFREIAAAYEVLGDDDKRARYDRGEDIEETGM 369 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~----~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~~~~~~ 369 (409)
=|.|++||++.+.+.++|+++||++..++||||.+ +.+.+.|+++.+|.+||+.|+|...|+.|-+...|+.|+.
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQh 176 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQH 176 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCcc
Confidence 47899999999999999999999999999999954 5789999999999999999999999999999888877754
No 262
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.65 E-value=1.3e-07 Score=84.42 Aligned_cols=65 Identities=26% Similarity=0.261 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH---HHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA---LVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
.+..++++|.+|..+|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999865 999999999999999999999999997
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.65 E-value=2.7e-05 Score=68.94 Aligned_cols=190 Identities=14% Similarity=0.114 Sum_probs=138.5
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHH-ccCCCcHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKE----DENNLEALLHRGRAYYY---LADHDVAQRHFQKGL-RLDPEHSEL 160 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al-~~~p~~~~~ 160 (409)
++.+...+-.+|....+|+.-+...+..-.+ .++.+.+.+.+|.++.+ .|+.++|+..+..++ ...+.+++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d- 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD- 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH-
Confidence 5667778888899999999998888887666 45566777889999998 999999999999954 45566677
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH-hc--
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL-NI-- 237 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~-- 237 (409)
.+..+|.++..+-.....-.....++|+..|.++.+++|+ ...=.|++.++...|...+....+.+.. .+
T Consensus 219 --~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-----~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ 291 (374)
T PF13281_consen 219 --TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-----YYSGINAATLLMLAGHDFETSEELRKIGVKLSS 291 (374)
T ss_pred --HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-----ccchHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 8999999998774332223345689999999999999986 2234566777777675433332222221 11
Q ss_pred ---------ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 238 ---------NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 238 ---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
.-.+...+-.++.+..-.+++++|++.+++++.+.|........+..+.
T Consensus 292 llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 292 LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 1234555667888889999999999999999999988766555444443
No 264
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.64 E-value=0.00016 Score=69.44 Aligned_cols=186 Identities=18% Similarity=0.120 Sum_probs=129.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHH
Q 043837 63 LKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDV 142 (409)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 142 (409)
...+..+++.+|+....+ ++...|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++
T Consensus 17 ~d~ld~~qfkkal~~~~k-llkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGK-LLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHhhhHHHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 345667888899999988 8999999999999999999999999999988887777788888889999999999999999
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH-HHHHHHc
Q 043837 143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL-CKVLVKL 221 (409)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l-a~~~~~~ 221 (409)
|..+|++++..+|. .. .+..+-.++... +.|.+-.+.--+.-+..|.+ +.+++.. ..+....
T Consensus 96 ~~~~Ye~~~~~~P~-ee---ll~~lFmayvR~---------~~yk~qQkaa~~LyK~~pk~----~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EE---LLYHLFMAYVRE---------KSYKKQQKAALQLYKNFPKR----AYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhCCc-HH---HHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCcc----cchHHHHHHHHHHhc
Confidence 99999999999999 44 333333333333 34433333222333356663 3333333 3333332
Q ss_pred CCh---------hHHHHHHHHHHhcC-hhcHHH-HHHHHHHHHhccCHHHHHHHHH
Q 043837 222 GRG---------KDALSSCTEALNIN-EELIEA-LVQRGEAKLLTEDWEGAVEDLK 266 (409)
Q Consensus 222 ~~~---------~~A~~~~~~al~~~-p~~~~~-~~~la~~~~~~~~~~~A~~~~~ 266 (409)
... .-|...+++.++.. +-...+ ....-.++..++++++|...+.
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 222 23556667777665 322111 1223356677899999999983
No 265
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.63 E-value=5e-07 Score=70.06 Aligned_cols=97 Identities=28% Similarity=0.268 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837 186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR----------GKDALSSCTEALNINEELIEALVQRGEAKLLT 255 (409)
Q Consensus 186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 255 (409)
++.|.+.++.....+|. ++..+++-|.+++.+.+ +++|+.-|+++|.++|+..++++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~nP~----DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL----DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH----hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 67788999999999999 67788888888877643 56788899999999999999999999999876
Q ss_pred cC-----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 256 ED-----------WEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 256 ~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
+. |++|..+|++|...+|++...+..|..+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 53 78899999999999999988887776654
No 266
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4e-08 Score=87.43 Aligned_cols=70 Identities=57% Similarity=0.909 Sum_probs=63.4
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
..++|++|++.+.++..+|+++|+++++.||||+++.....++.++++|.+||++|+|+.+|..||...+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 3689999999999999999999999999999999776655666789999999999999999999999776
No 267
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.60 E-value=8.6e-08 Score=68.87 Aligned_cols=52 Identities=35% Similarity=0.436 Sum_probs=45.4
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~ 350 (409)
..++|++|++.++++.++|+++|+++++.+|||+... ...+++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999998422 246788999999984
No 268
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.58 E-value=0.00011 Score=64.08 Aligned_cols=246 Identities=17% Similarity=0.128 Sum_probs=172.7
Q ss_pred CChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLS-EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ-STFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
|+|+.|.+-|+..+. +|+.- ..+..|-.--..+|..+.|..+...+....+... .....-...+..|+|+.|+++.+
T Consensus 134 G~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 134 GDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred CchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 789999999987654 44322 2233333344578888888888887766543322 22223335677899999999998
Q ss_pred HHH--HhhCCCcH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 80 KVV--LVFSPACS-----KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 80 ~~~--~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
... ..+.++.. -.+...+.... .-+...|.....+++++.|+...+-..-+..++..|+..++-..++.+.+
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 632 11222211 11222222222 34688999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH---HccCCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837 153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA---LALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS 229 (409)
Q Consensus 153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a---l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 229 (409)
..|...- ..+|... .--+.++.-++++ ..+.|+ +.+....++...+..|++..|..
T Consensus 292 ~ePHP~i--------a~lY~~a---------r~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 292 AEPHPDI--------ALLYVRA---------RSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred cCCChHH--------HHHHHHh---------cCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHH
Confidence 9886432 2222222 2223344444443 446677 78899999999999999999999
Q ss_pred HHHHHHhcChhcHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhh
Q 043837 230 SCTEALNINEELIEALVQRGEAKLLT-EDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 230 ~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 271 (409)
..+.+....|.. .++..++.+-... ||-.+...++-++++-
T Consensus 351 ~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 351 KAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 999999999864 4566777776655 9999999999999874
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=2.1e-05 Score=66.97 Aligned_cols=167 Identities=12% Similarity=-0.003 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCC---HHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-DENN---LEALLHRG 131 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~l~ 131 (409)
+.....+..++..|++.+|....++ ++...|.+..++..--..++.+|+...-...+++++.. +|+- ..+.-.++
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdk-lL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDK-LLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHH-HHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 3344455566667777777777777 67777777666666666777777777777777777665 4443 33344566
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH
Q 043837 132 RAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY 211 (409)
Q Consensus 132 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 211 (409)
..+...|-|++|.+.-+++++++|.+.. +...++.++... ++..++++...+.-..-....-....-|
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN~~D~W---a~Ha~aHVlem~---------~r~Keg~eFM~~ted~Wr~s~mlasHNy 250 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQINRFDCW---ASHAKAHVLEMN---------GRHKEGKEFMYKTEDDWRQSWMLASHNY 250 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCCCcchH---HHHHHHHHHHhc---------chhhhHHHHHHhcccchhhhhHHHhhhh
Confidence 6667777777777777777777777766 666666666666 7777777766654332222111112234
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 043837 212 LGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 212 ~~la~~~~~~~~~~~A~~~~~~al 235 (409)
...+.++...++|+.|++.|++-+
T Consensus 251 WH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 251 WHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhhcccchhHHHHHHHHHH
Confidence 456666777777777777776544
No 270
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.57 E-value=1.5e-05 Score=72.71 Aligned_cols=99 Identities=23% Similarity=0.268 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE 263 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 263 (409)
|+...|+.++..|+...|.. ......++|.++...+-...|-..+.+++.+....+-.++.+|..+..+.+.+.|++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~---~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQ---QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred CCcHHHHHHHHHHhccChhh---hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 88899999999999988863 334577899999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHH
Q 043837 264 DLKSAAQQSPQDMNIREALMRA 285 (409)
Q Consensus 264 ~~~~al~~~p~~~~~~~~l~~~ 285 (409)
.|+.|+.++|+++.+.+.|..+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999988776554
No 271
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.56 E-value=8.2e-08 Score=66.06 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CC-C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 043837 87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKE---DE-N---NLEALLHRGRAYYYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 153 (409)
|....++.++|.+|..+|++++|+++|++++++ .+ + ...++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445678899999999999999999999999975 22 2 2457889999999999999999999999875
No 272
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.53 E-value=2.1e-06 Score=66.62 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL 83 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 83 (409)
|+.|.+.++.....+|.+++++++-|.+++.+.++.. ....... +++|+.-|++ ++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~-----------g~es~~m------------iedAisK~ee-AL 62 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQ-----------GPESKKM------------IEDAISKFEE-AL 62 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS------------HHHHHHH------------HHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccC-----------cchHHHH------------HHHHHHHHHH-HH
Confidence 6789999999999999999999999999988766432 1111122 3455666666 89
Q ss_pred hhCCCcHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHH
Q 043837 84 VFSPACSKAKLLKVKLLLAAKD-----------YASAISETGYLLKEDENNLE 125 (409)
Q Consensus 84 ~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~ 125 (409)
.++|+...+++.+|.+|...+. |++|..+|++++..+|++..
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999999987763 55666666666666666543
No 273
>PHA02624 large T antigen; Provisional
Probab=98.51 E-value=1.7e-07 Score=86.92 Aligned_cols=62 Identities=29% Similarity=0.553 Sum_probs=56.1
Q ss_pred cchhhhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837 292 SKRKDWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARY 358 (409)
Q Consensus 292 ~~~~~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~ 358 (409)
....++|++||+.+++ +..+|+++|+++++++|||+... +++|++|++||++|+|+.++.+|
T Consensus 8 ee~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 8 EESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 3456899999999999 99999999999999999998532 46899999999999999999998
No 274
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=2.1e-05 Score=70.23 Aligned_cols=146 Identities=12% Similarity=0.026 Sum_probs=104.9
Q ss_pred HHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC--------cHHHHHHHH
Q 043837 27 HRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA--------CSKAKLLKV 97 (409)
Q Consensus 27 ~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~--------~~~~~~~~a 97 (409)
.....|++..+...+.......+.. ...+...+-++...|..|++.+|.+.+...-+...|. .-.+|.++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 3344445554544443333333221 1234556778888889999999999986533333333 234568999
Q ss_pred HHHHHccCHHHHHHHHHHHHhh---------CC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 98 KLLLAAKDYASAISETGYLLKE---------DE---------NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
.++++.+.|.-+..+|.++++. .| ...+.+|+.|..|...|++-.|.++|.++....-.++.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 9999999999999999999961 11 23457899999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 043837 160 LKKAYFALKNLLKKTK 175 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~ 175 (409)
.|.+++.+...-.
T Consensus 371 ---lWLRlAEcCima~ 383 (696)
T KOG2471|consen 371 ---LWLRLAECCIMAL 383 (696)
T ss_pred ---HHHHHHHHHHHHh
Confidence 8999988876543
No 275
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.47 E-value=4.7e-07 Score=80.60 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY 136 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 136 (409)
..-.+|...+..+.|+.|+..|.+ ++.++|+++..+-+++..+++.+++..|+..+.++++.+|....+|+..|.+...
T Consensus 6 e~k~ean~~l~~~~fd~avdlysK-aI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSK-AIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHH-HHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 345677888999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837 137 LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172 (409)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 172 (409)
++.+.+|+..|+....+.|+++. +...+..+..
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~---~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPD---ATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHH---HHHHHHHHHH
Confidence 99999999999999999999998 5555544443
No 276
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=8.7e-05 Score=70.49 Aligned_cols=229 Identities=14% Similarity=0.088 Sum_probs=146.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHH--------HHHHHHHH-H-HHHHHHHHHHHhCCCc
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAE--------KELSQLLQ-A-QSTFDSALKLYDSGEY 71 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~~l~~~~~-~-~~~~~~a~~~~~~~~~ 71 (409)
|+.+.|.+..+-+ .+..+|-++|....+..+.+-|.-.+- +++..... . .....-|......|-.
T Consensus 742 G~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMl 816 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGML 816 (1416)
T ss_pred ccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhH
Confidence 4555555444321 234578888888888888776632221 11111111 0 2223445556677888
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
++|+.+|.+ . .-+-.+-..|...|.|++|.+..+.-=++.- -..|++.+..+...++.+.|+++|+++-
T Consensus 817 EeA~~lYr~-c--------kR~DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 817 EEALILYRQ-C--------KRYDLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHHHHHHH-H--------HHHHHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 999999977 3 2344566788888999999887664322222 3468888999999999999999998852
Q ss_pred ----------ccCCCcHHH-------HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837 152 ----------RLDPEHSEL-------KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214 (409)
Q Consensus 152 ----------~~~p~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 214 (409)
.-+|..... ...|...+..+... |+.+.|+.+|..|- -|+.+
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~---------GemdaAl~~Y~~A~------------D~fs~ 944 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESV---------GEMDAALSFYSSAK------------DYFSM 944 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcc---------cchHHHHHHHHHhh------------hhhhh
Confidence 222222110 01333334444333 77888888876543 45566
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 215 CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 215 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
..+..-+|+.++|-...++ ..+..+.+.+|+.|...|++.+|+..|.+|....
T Consensus 945 VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred eeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 6667777888887665543 4677889999999999999999999998886543
No 277
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.4e-07 Score=69.78 Aligned_cols=64 Identities=33% Similarity=0.587 Sum_probs=59.4
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARY 358 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~ 358 (409)
-..|++|.|.+..+.++|++.|++++...|||+++++..+|+.+|.-+.+||..|-|+..|.+-
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999998865543
No 278
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.5e-05 Score=64.74 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHH-------HhhCCCc----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVV-------LVFSPAC----------SKAKLLKVKLLLAAKDYASAISETGYLL 117 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al 117 (409)
.......+..+++.|+|.+|...|..++ ++..|.. ...+.+.+.|++..++|-++++.+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445677888899999888888887643 3334544 3567889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 118 KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 118 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..+|.+..+|+.+|.++...-+..+|...|.++|+++|.-..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 999999999999999999999999999999999999997655
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.38 E-value=1.8e-05 Score=71.10 Aligned_cols=181 Identities=15% Similarity=0.095 Sum_probs=117.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH----------HHHHHH
Q 043837 95 LKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS----------ELKKAY 164 (409)
Q Consensus 95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~ 164 (409)
.+..-..+..+.+.-++...+|++++|+.+++|..|+.-.. .-..+|..+++++++...... .....+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 34444556778888888888888888888888887775322 224566666666654211100 000000
Q ss_pred HH---HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-Chh
Q 043837 165 FA---LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-NEE 240 (409)
Q Consensus 165 ~~---l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~ 240 (409)
.. --.++.....+..+.+.|+.++|++.+...++..|... +..++.++..+++.++.|.++...+.+.-++ -|.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~--~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD--NLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc--hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 00 00122222334444455999999999999999887532 5678999999999999999999999886443 356
Q ss_pred cHHHHHHHHHHHHhc-cC---------------HHHHHHHHHHHHhhCCCcHHHH
Q 043837 241 LIEALVQRGEAKLLT-ED---------------WEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 241 ~~~~~~~la~~~~~~-~~---------------~~~A~~~~~~al~~~p~~~~~~ 279 (409)
++...+..|.+..+. ++ -..|++.+.+|++.+|.-+...
T Consensus 329 SAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 329 SATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 677666666654331 11 2357788999999999877643
No 280
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=2.7e-05 Score=64.06 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----C--CCCHHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVFS-PACSKAKLLKVKLLLAAKDYASAISETGYLLKE----D--ENNLEALLH 129 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~ 129 (409)
..+..+..+.-.++|.-.+..+.+ +++.+ |..+.....++.+.++.|+.+.|..+++++-+. + ..+..++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~-vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHS-VIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHH-HHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345567778888999999999999 55555 778999999999999999999999999965432 2 223446778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVH 209 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 209 (409)
.+.+|.-.+++..|...+.+++..||.++. +.++.+.|+..+ |+..+|++.++.++.+.|.... +-.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~---a~NnKALcllYl---------g~l~DAiK~~e~~~~~~P~~~l-~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAV---ANNNKALCLLYL---------GKLKDALKQLEAMVQQDPRHYL-HES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchh---hhchHHHHHHHH---------HHHHHHHHHHHHHhccCCccch-hhh
Confidence 889999999999999999999999999998 888888888888 9999999999999999998654 333
Q ss_pred HHHHHHHH
Q 043837 210 LYLGLCKV 217 (409)
Q Consensus 210 ~~~~la~~ 217 (409)
+..++...
T Consensus 325 ~~~nL~tm 332 (366)
T KOG2796|consen 325 VLFNLTTM 332 (366)
T ss_pred HHHHHHHH
Confidence 44444443
No 281
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=8.1e-05 Score=60.19 Aligned_cols=187 Identities=12% Similarity=0.152 Sum_probs=123.0
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHhcCChHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED-----EN-NLEALLHRGRAYYYLADHDV 142 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~~~~ 142 (409)
+.+++|.++|.+ -+..|...++|..|=..|.++-+.. .. ....|...+.+|.+ .++++
T Consensus 28 ~k~eeAadl~~~---------------Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYER---------------AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred cchHHHHHHHHH---------------HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 456666666655 2334444455555555555554321 11 12344445555544 48999
Q ss_pred HHHHHHHHHccCCCcHH---HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--chHHHHHHHHHH
Q 043837 143 AQRHFQKGLRLDPEHSE---LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--HNVHLYLGLCKV 217 (409)
Q Consensus 143 A~~~~~~al~~~p~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~la~~ 217 (409)
|+.++++++.+..+-.. ....+..++.++..- ..++++||.+|+++-+....... .....+...+..
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd--------l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD--------LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh--------HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 99999999887654433 223455666665421 17899999999999875543221 133466677777
Q ss_pred HHHcCChhHHHHHHHHHHhcChhcH-------HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837 218 LVKLGRGKDALSSCTEALNINEELI-------EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 279 (409)
-..+++|.+|+..|+++....-++. ..++.-|.|++...+.-.+...+++..+++|...+.+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 8889999999999999887644432 3445678888888999999999999999999876644
No 282
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.9e-06 Score=70.51 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA---CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHR 130 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 130 (409)
.+..+-..+..+++.++|..|+..|.+.+....++ ++..|.++|.|.+..|+|..|+..+.+++.++|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 56677788999999999999999999944444333 467899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 131 GRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+.|++.+.++.+|...++..+.++.+...
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 99999999999999999999887766554
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.30 E-value=2.1e-06 Score=51.27 Aligned_cols=42 Identities=17% Similarity=-0.045 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR 132 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 132 (409)
.++..+|.+|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777888888888888888888888888888887777764
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00014 Score=59.26 Aligned_cols=176 Identities=18% Similarity=0.071 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (409)
...|..-+.+|...++|++|..++.++++-..++. .++-..+.....+..+.++..+++++..+.-.+....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd-- 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD-- 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc--
Confidence 34455567788888999999999999986554432 3455677777788889999999999887532221100
Q ss_pred HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----
Q 043837 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI---- 237 (409)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 237 (409)
..-..++++-..++.-+.++|+.+|++++.+-..+. ..-...+-..+.++.+..++.+|-..+.+-...
T Consensus 109 -----tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 109 -----TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred -----hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 011233455555666899999999999988654322 124566778889999999999998887765432
Q ss_pred --ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 238 --NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 238 --~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
.++....+.....+|....+|..|..+++...++.
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 34445666777778888889999999999887764
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.27 E-value=0.00026 Score=63.92 Aligned_cols=186 Identities=17% Similarity=0.100 Sum_probs=112.5
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837 3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV 82 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 82 (409)
+...-++.-.+||+++|+.+.+|..+|.-.. .-..+|...+.+++...+.. +.+.......|..-+.. ..
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~~~e~~--~~--- 252 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEAS---LGKSQFLQHHGHFWEAW--HR--- 252 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHh---hchhhhhhcccchhhhh--hc---
Confidence 5677889999999999999999999886322 22455555555554432221 11111111111110100 00
Q ss_pred HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-CCCcHH
Q 043837 83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHFQKGLRL-DPEHSE 159 (409)
Q Consensus 83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 159 (409)
........+...+|.|..++|+.++|++.++..++..|. +..++.++..++..++.|.++...+.+-=++ -|+...
T Consensus 253 -Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 253 -RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred -cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence 000112456678999999999999999999999998875 4568899999999999999999999885322 234443
Q ss_pred HHHHHHHHHHHHHHHHHHh-----hHHhcCC---HHHHHHHHHHHHccCCCC
Q 043837 160 LKKAYFALKNLLKKTKSAE-----DNVSKGK---LRVAVEDFKAALALDPNH 203 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~-----~~~~~~~---~~~A~~~~~~al~~~~~~ 203 (409)
..+.-+.+ .....++ .+.++|- -..|++.+.+|++.+|.-
T Consensus 332 ---i~YTaALL-kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 332 ---ICYTAALL-KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred ---HHHHHHHH-HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 22222221 1111111 1122221 234677788888888873
No 286
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00013 Score=62.35 Aligned_cols=164 Identities=15% Similarity=0.055 Sum_probs=132.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL-DPEHSELKKAYFALKNLL 171 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~l~~~~ 171 (409)
....+.+..-.|++.+|...++++++..|.+.-++..--.+++.+|+...-...+++++.. +|+-+-..-+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3444566777899999999999999999999888888888999999999999999999987 666654323444555556
Q ss_pred HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh----cHHHHHH
Q 043837 172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE----LIEALVQ 247 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~ 247 (409)
... |-|++|.+.-++++++++. ...+...++.++...+++.++.+...+.-..-.. -...|..
T Consensus 186 ~E~---------g~y~dAEk~A~ralqiN~~----D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH 252 (491)
T KOG2610|consen 186 EEC---------GIYDDAEKQADRALQINRF----DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH 252 (491)
T ss_pred HHh---------ccchhHHHHHHhhccCCCc----chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH
Confidence 666 9999999999999999999 7788999999999999999999998876433211 1234566
Q ss_pred HHHHHHhccCHHHHHHHHHHHH
Q 043837 248 RGEAKLLTEDWEGAVEDLKSAA 269 (409)
Q Consensus 248 la~~~~~~~~~~~A~~~~~~al 269 (409)
.|.++++-+.|+.|++.|.+-+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHH
Confidence 8889999999999999997654
No 287
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=2.9e-05 Score=69.33 Aligned_cols=224 Identities=13% Similarity=0.137 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHH------HHHhCCCchHHHHHHHHHH--Hh---------
Q 043837 22 SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSAL------KLYDSGEYTKPLEYIDKVV--LV--------- 84 (409)
Q Consensus 22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~------~~~~~~~~~~A~~~~~~~~--~~--------- 84 (409)
.-.++..|.+++....+..|+......+.........+..+. .+....+.++|+.+++-.. +.
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 456777888888888888887766665554443333222222 2233344455554443210 00
Q ss_pred ---------hCC------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837 85 ---------FSP------------ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 85 ---------~~p------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 143 (409)
.-| .-..+.......++++.+...+....+.++.+..+.+.++...+..++..|++.+|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence 001 01234455566777888888888888888888888999999999999999999999
Q ss_pred HHHHHHHH-cc------CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc-c--------CCC-----
Q 043837 144 QRHFQKGL-RL------DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA-L--------DPN----- 202 (409)
Q Consensus 144 ~~~~~~al-~~------~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~--------~~~----- 202 (409)
.+.+...- .. .|.... ...|.++|.+...+ +.|.-+..+|.+|++ . .|.
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~-cif~NNlGcIh~~~---------~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSS-CIFNNNLGCIHYQL---------GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHHHhcccccccCccccchhhh-heeecCcceEeeeh---------hhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 99876531 11 222211 12568888888888 999999999999995 1 111
Q ss_pred CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837 203 HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT 255 (409)
Q Consensus 203 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 255 (409)
......++.++.|..|+..|+.-.|.++|.+++...-.+|..|.++|.|.+..
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 00125688999999999999999999999999999999999999999998753
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.25 E-value=0.00093 Score=60.73 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL 199 (409)
Q Consensus 121 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 199 (409)
......+...+.+....|.++.|...+.++....+.... ...+....+.++-.. |+..+|+..++..+..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~---------g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ---------GEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Confidence 345567888888888888888888888888876532211 011333333333333 8888888888777761
Q ss_pred CCC------------------------------CccchHHHHHHHHHHHHHc------CChhHHHHHHHHHHhcChhcHH
Q 043837 200 DPN------------------------------HTAHNVHLYLGLCKVLVKL------GRGKDALSSCTEALNINEELIE 243 (409)
Q Consensus 200 ~~~------------------------------~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~ 243 (409)
... .....+.++..+|...... +..++++..|.++++++|+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 214 RLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 110 1112456677777777777 7888999999999999999999
Q ss_pred HHHHHHHHHHhccCH-----------------HHHHHHHHHHHhhCCC
Q 043837 244 ALVQRGEAKLLTEDW-----------------EGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 244 ~~~~la~~~~~~~~~-----------------~~A~~~~~~al~~~p~ 274 (409)
+|...|..+...=+. ..|+..|-+++...++
T Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 294 AWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999888876544211 3467777777777666
No 289
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.24 E-value=2.9e-06 Score=66.09 Aligned_cols=54 Identities=28% Similarity=0.379 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 307 ASISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 307 ~~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
.+..+++++|++++..+|||+... .+..+...+..|++||++|+||-+|..|.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 357889999999999999998433 334577889999999999999999999986
No 290
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.23 E-value=0.0011 Score=58.98 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHhhCCCCHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVF----SPACSKAKLLKVKLLLA---AKDYASAISETGY-LLKEDENNLEALL 128 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~ 128 (409)
...+.-+.+-...+|+.-+.+.+. +... -+....+.+.+|.++.+ .|+.++|+..+.. +....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~-l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVET-LEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHH-hhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344555667777899999999987 4444 34467788889999998 9999999999999 5555677899999
Q ss_pred HHHHHHHhc---------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH-------H
Q 043837 129 HRGRAYYYL---------ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE-------D 192 (409)
Q Consensus 129 ~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~-------~ 192 (409)
.+|.+|-.. ...++|+..|.++..++|+... -.+++.++... |.-.+... .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~----GIN~AtLL~~~---------g~~~~~~~el~~i~~~ 288 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS----GINAATLLMLA---------GHDFETSEELRKIGVK 288 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc----hHHHHHHHHHc---------CCcccchHHHHHHHHH
Confidence 999988542 2478999999999999976542 33444443333 32111111 1
Q ss_pred HHHHH-ccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837 193 FKAAL-ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242 (409)
Q Consensus 193 ~~~al-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (409)
+...+ +........+.+.+-.+..+..-.+++++|+..+++++.+.|...
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 11111 111111112566777888899999999999999999999977644
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.23 E-value=1.4e-06 Score=48.47 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHh
Q 043837 10 DLNTAIEADPTLSEAYFHRGSVLRQLCRVKARN 42 (409)
Q Consensus 10 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 42 (409)
+|+++|+++|+++.+|+.+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999875
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.18 E-value=1.8e-06 Score=48.02 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=26.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 113 TGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 113 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67788888888888888888888888888775
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=3.8e-06 Score=50.17 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837 210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE 250 (409)
Q Consensus 210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 250 (409)
++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45556666666666666666666666666666666655553
No 294
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00097 Score=55.13 Aligned_cols=169 Identities=12% Similarity=0.051 Sum_probs=115.2
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH-HHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD-VAQRH 146 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~ 146 (409)
..-..|+.+... ++.++|.+..+|..+-.|+..++ +..+-++++..+++.+|.+..+|..+-.+...+|++. .-+..
T Consensus 57 E~S~RAl~LT~d-~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTED-AIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHH-HHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 445677777777 78888888888777777766554 5667778888888888888888888877888888777 77788
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC----
Q 043837 147 FQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG---- 222 (409)
Q Consensus 147 ~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~---- 222 (409)
.+.++..+..+-- +|.....+.... +.|+.-+.+..+.++.+-- +-.+|..+-.+.....
T Consensus 136 ~~~~l~~DaKNYH---aWshRqW~~r~F---------~~~~~EL~y~~~Lle~Di~----NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 136 TKLMLDDDAKNYH---AWSHRQWVLRFF---------KDYEDELAYADELLEEDIR----NNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred HHHHHhccccchh---hhHHHHHHHHHH---------hhHHHHHHHHHHHHHHhhh----ccchhheeeEEEEeccCCcc
Confidence 8888887777766 666666666666 7788888887777776654 2224443322222211
Q ss_pred --ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837 223 --RGKDALSSCTEALNINEELIEALVQRGEAKLL 254 (409)
Q Consensus 223 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 254 (409)
..+.-+.+..+.|.+.|++..+|..+.-++..
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 12334556667777788888887777666654
No 295
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.15 E-value=4.6e-06 Score=65.80 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=56.1
Q ss_pred hhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 295 KDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 295 ~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
.+||+++++... .+...+.+.|+.+....|||+... ++..+...-..|++||.+|.||-+|..|--
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 368999999887 678999999999999999998543 344566677899999999999999999965
No 296
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=0.00014 Score=63.35 Aligned_cols=142 Identities=16% Similarity=0.160 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY-LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 170 (409)
+|..+.....+.+..+.|..+|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+.. .|......
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---FWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHH
Confidence 344444555555556666666666654444445555555555444 34444466666666666565555 34333333
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH
Q 043837 171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE 250 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 250 (409)
+..+ ++.+.|..+|++++..-|.... ...+|.....
T Consensus 80 l~~~---------~d~~~aR~lfer~i~~l~~~~~-----------------------------------~~~iw~~~i~ 115 (280)
T PF05843_consen 80 LIKL---------NDINNARALFERAISSLPKEKQ-----------------------------------SKKIWKKFIE 115 (280)
T ss_dssp HHHT---------T-HHHHHHHHHHHCCTSSCHHH-----------------------------------CHHHHHHHHH
T ss_pred HHHh---------CcHHHHHHHHHHHHHhcCchhH-----------------------------------HHHHHHHHHH
Confidence 3333 5555555555555554443110 2234444555
Q ss_pred HHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837 251 AKLLTEDWEGAVEDLKSAAQQSPQDMNIRE 280 (409)
Q Consensus 251 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 280 (409)
.-...|+.+......+++.+..|++..+..
T Consensus 116 fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 116 FESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 555556666666666666666666554443
No 297
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.11 E-value=0.00015 Score=63.15 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcChhc
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK-LGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~ 241 (409)
+|..+....... +..+.|...|.+|++..+. ...+|...|.+-.. .++.+.|...|+.+++..|.+
T Consensus 3 v~i~~m~~~~r~---------~g~~~aR~vF~~a~~~~~~----~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRT---------EGIEAARKVFKRARKDKRC----TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHCCCCS-----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHh---------CChHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 455555555555 5688888888888865544 55678888888666 455566999999999998988
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHH
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM---NIREALMRAEKAL 289 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~ 289 (409)
...|......+...++.+.|...|++++..-|... .++......+...
T Consensus 70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~ 120 (280)
T PF05843_consen 70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY 120 (280)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc
Confidence 88888888888899999999999999988877655 3555444444433
No 298
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.11 E-value=0.00032 Score=65.68 Aligned_cols=160 Identities=13% Similarity=0.020 Sum_probs=121.4
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHH-H------HHHHHHHHH----hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837 102 AAKDYASAISETGYLLKEDENNLE-A------LLHRGRAYY----YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170 (409)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~p~~~~-~------~~~l~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 170 (409)
-.|+-+.++..+.++.+...-... + |+.....+. ...+.+.|.+.+.......|+..- .+...+.+
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l---fl~~~gR~ 276 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL---FLFFEGRL 276 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHH
Confidence 458899999999998873221111 1 111111112 234678899999999999999887 77778888
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh-cHHHHHHHH
Q 043837 171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE-LIEALVQRG 249 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la 249 (409)
.... |+.++|++.|++++.....-+......++.+++++..+.+|++|..++.+.++.+.- .....+..|
T Consensus 277 ~~~~---------g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 277 ERLK---------GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHh---------cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 8777 999999999999997655555556678899999999999999999999999987553 344556789
Q ss_pred HHHHhccCH-------HHHHHHHHHHHhhCC
Q 043837 250 EAKLLTEDW-------EGAVEDLKSAAQQSP 273 (409)
Q Consensus 250 ~~~~~~~~~-------~~A~~~~~~al~~~p 273 (409)
.|+..+++. ++|.+.+.++-.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999 888888888766543
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.08 E-value=8.1e-06 Score=45.66 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
.+|+.+|.++..++++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35555666666666666666666666666554
No 300
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00062 Score=57.54 Aligned_cols=132 Identities=20% Similarity=0.100 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHhCCCchHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-----AQSTFDSALKLYDSGEYTKPLE 76 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~A~~ 76 (409)
|++.+|...|..++..+|++.++...++.||...|+.+.|...+...-..... ...........-...+......
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~ 227 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQR 227 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 67889999999999999999999999999999999999887776553222111 1112222222222333333333
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcC
Q 043837 77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN--LEALLHRGRAYYYLA 138 (409)
Q Consensus 77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~ 138 (409)
....+|++..+.+.+|..+...|+.+.|++.+-..++.+... ..+...+-.++...|
T Consensus 228 -----~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 228 -----RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred -----HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 345589999999999999999999999999998888876543 333344444444444
No 301
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0013 Score=54.44 Aligned_cols=235 Identities=17% Similarity=0.092 Sum_probs=166.9
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837 99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA-DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177 (409)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 177 (409)
++.+......|+.....+|.++|.+..+|..+-.++..++ +..+-++++..++.-+|.+-. +|.....+...+
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ---vWHHRr~ive~l--- 125 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ---VWHHRRVIVELL--- 125 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh---HHHHHHHHHHHh---
Confidence 3445556788999999999999999999887777776654 678889999999999999998 777777777777
Q ss_pred hhHHhcCCHH-HHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837 178 EDNVSKGKLR-VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE 256 (409)
Q Consensus 178 ~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 256 (409)
+++. .-++..+.++..+.. +..+|..+-.+....+.++.-+.++.+.|+.+-.+-.+|..+-.+.....
T Consensus 126 ------~d~s~rELef~~~~l~~DaK----NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~ 195 (318)
T KOG0530|consen 126 ------GDPSFRELEFTKLMLDDDAK----NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTK 195 (318)
T ss_pred ------cCcccchHHHHHHHHhcccc----chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEecc
Confidence 8877 788999999998888 78899999999999999999999999999988777667755433322211
Q ss_pred ------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-Hh---hcchhhhhhhhccc----ccCCHHHHHHHHHHHHhc
Q 043837 257 ------DWEGAVEDLKSAAQQSPQDMNIREALMRAEKA-LK---MSKRKDWYKILGVS----KTASISEIKRAYKKLALQ 322 (409)
Q Consensus 257 ------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~---~~~~~~~~~~l~~~----~~~~~~e~~~~y~~~a~~ 322 (409)
..+.-+.+..+.+.+.|++..++..|.-+... -+ .++-.++-.-|-.. ...-...+...|..-++.
T Consensus 196 ~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~ 275 (318)
T KOG0530|consen 196 GVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALA 275 (318)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhh
Confidence 23455678888999999999999888877665 12 11112222222112 222245566666444555
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHhcC---Chhhhhh
Q 043837 323 WHPDKNVDNREEAENKFREIAAAYEVLG---DDDKRAR 357 (409)
Q Consensus 323 ~~~d~~~~~~~~a~~~~~~i~~ay~~l~---d~~~~~~ 357 (409)
.+.+... ...+..++|+.|+ ||-.+..
T Consensus 276 ~~~~~~~--------~a~~a~~ly~~La~~~DpiR~ny 305 (318)
T KOG0530|consen 276 YKSSAEE--------LARKAVKLYEDLAIKVDPIRKNY 305 (318)
T ss_pred ccccchH--------HHHHHHHHHHHHhhccCcHHHHH
Confidence 4433221 2333667788887 6665543
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.02 E-value=0.00039 Score=49.82 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--------cchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--------AHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
+..++..|..+..++..+..+-|++|...+.++.++..+-| -..+.++..|+.++..+|+|++++....++|
T Consensus 3 LkeVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 3 LKEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45667777788888888888999999999999998654322 2356778889999999999999988888887
Q ss_pred hc-------Chhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 236 NI-------NEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 236 ~~-------~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
.. +.+. +.+.+.++.++..+|+.++|+..|+.+-++
T Consensus 83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 53 3333 456678999999999999999999988764
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.01 E-value=1.6e-05 Score=44.45 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
No 304
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00096 Score=56.42 Aligned_cols=131 Identities=25% Similarity=0.288 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH--HH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRG--RA 133 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~--~~ 133 (409)
...+..+......+++.+|...+.. ++...|.+..+...++.|+...|+.+.|...+...-....+. ......+ ..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~-al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~l 212 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQ-ALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIEL 212 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHH-HHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHH
Confidence 4445666667777777777777766 667777777777777777777777777666555432211111 1111111 22
Q ss_pred HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP 201 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 201 (409)
+.......+. ..+.+.+..+|++.+ +.+.++..+... |+.++|.+.+-..++.+.
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~---aa~~lA~~~~~~---------g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVE---AALALADQLHLV---------GRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcc
Confidence 2222222221 233444555666666 555565555555 666666666666555544
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.00 E-value=1.3e-05 Score=44.79 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 208 VHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 208 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
+.+|+++|.++..++++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3589999999999999999999999999999974
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=0.0015 Score=51.63 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE 263 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 263 (409)
+++++|+..++.++....+... ...+-..++.+.+.++.+++|+..++.....+ =.+..-..+|.++...|+.++|+.
T Consensus 103 ~~~d~A~aqL~~~l~~t~De~l-k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 103 NNLDKAEAQLKQALAQTKDENL-KALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred ccHHHHHHHHHHHHccchhHHH-HHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHH
Confidence 5555555555555544333211 34455566666666666666666665432210 112234456777777777777777
Q ss_pred HHHHHHhhCCC
Q 043837 264 DLKSAAQQSPQ 274 (409)
Q Consensus 264 ~~~~al~~~p~ 274 (409)
.|+++++..++
T Consensus 181 ay~kAl~~~~s 191 (207)
T COG2976 181 AYEKALESDAS 191 (207)
T ss_pred HHHHHHHccCC
Confidence 77777766533
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.93 E-value=3.1e-05 Score=43.24 Aligned_cols=32 Identities=22% Similarity=0.114 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDEN 122 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 122 (409)
.+++.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555566666666666666666666665554
No 308
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.89 E-value=0.0059 Score=57.34 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=96.1
Q ss_pred CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCChHHH
Q 043837 68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL----EALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A 143 (409)
..+.+.|..++.. .....|+.....+..|+++...|+.++|++.+++++....... -.++.++.++..+.+|++|
T Consensus 246 ~~~~~~a~~lL~~-~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEE-MLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4566788888888 8888999999999999999999999999999999985443322 2578999999999999999
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCH-------HHHHHHHHHHHccC
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL-------RVAVEDFKAALALD 200 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~~~ 200 (409)
..++.+.++.+.-+.. ...+..+.++... ++. ++|...+.++-...
T Consensus 325 ~~~f~~L~~~s~WSka--~Y~Y~~a~c~~~l---------~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKA--FYAYLAAACLLML---------GREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHhccccHHH--HHHHHHHHHHHhh---------ccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999987655443 1445556666665 666 88888888776543
No 309
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.024 Score=56.03 Aligned_cols=183 Identities=13% Similarity=-0.012 Sum_probs=126.1
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l 167 (409)
+.+.+|..+|...++.+...+|++.|-++ +++..|...-.+....|.|++-+.++..+.+......--....+.+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 56889999999999999999999998765 4567788888899999999999999998877543321111122222
Q ss_pred HHHHH---------------HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837 168 KNLLK---------------KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232 (409)
Q Consensus 168 ~~~~~---------------~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 232 (409)
+.... ...-+...++.+.|+.|.-+|. +..-|..++..+..+|+|+.|+...+
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~------------~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS------------NVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 22211 1123566677788888777775 34467788888889999998888887
Q ss_pred HHHhcCh-------------------------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 233 EALNINE-------------------------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 233 ~al~~~p-------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
+|-.... -+++-+-.+...|...|-+++-+..++.++-+..-+-.....|+.++.
T Consensus 1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 7643210 023344556677888888999888888888776555444444444443
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.0048 Score=48.95 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC
Q 043837 108 SAISETGYLLKEDENNLE---ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184 (409)
Q Consensus 108 ~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (409)
+.+...++.+..+|.+.. +-..++..+...+++++|+..++.++....+..-...+-.+++.+.... +
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~---------~ 140 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ---------K 140 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh---------h
Confidence 555556666666655433 3467889999999999999999999987655544344556677777666 9
Q ss_pred CHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 185 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
++++|+..++....-. +.+.....+|.++...|+-++|...|+++++..++.
T Consensus 141 k~D~AL~~L~t~~~~~-----w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 141 KADAALKTLDTIKEES-----WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hHHHHHHHHhcccccc-----HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9999999887644322 245567789999999999999999999999987543
No 311
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.013 Score=48.28 Aligned_cols=204 Identities=15% Similarity=0.054 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 23 EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA 102 (409)
Q Consensus 23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~ 102 (409)
..|..-+.+|....++++|...+.++..-.+...++|.-|. ++-..+.....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAK----------------------------ayEqaamLake 83 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAK----------------------------AYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHH----------------------------HHHHHHHHHHH
Confidence 34555566666666666666555555543333333333222 22222333333
Q ss_pred ccCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH---HHHHHHHHHHHHHHH
Q 043837 103 AKDYASAISETGYLLKED-----ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE---LKKAYFALKNLLKKT 174 (409)
Q Consensus 103 ~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~l~~~~~~~ 174 (409)
+..+.++..+++++..+. |+....-...+--.....++++|++.|++++.+-..+.. ....+...+.++..+
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 444444444444444331 222222222222233445678888888888775433322 223444455555555
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHcc----CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----ChhcHHHHH
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALAL----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI----NEELIEALV 246 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 246 (409)
.++.+|-..+.+-... +.-+. ....+...-.+++...+|..|..+++...++ .|++..++.
T Consensus 164 ---------~kf~Eaa~a~lKe~~~~~~~~~y~~--~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 164 ---------EKFTEAATAFLKEGVAADKCDAYNS--QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred ---------HHhhHHHHHHHHhhhHHHHHhhccc--HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 7777776666543322 11110 3445556666777778999999999987765 355566666
Q ss_pred HHHHHHHhccCHHHHHHHHH
Q 043837 247 QRGEAKLLTEDWEGAVEDLK 266 (409)
Q Consensus 247 ~la~~~~~~~~~~~A~~~~~ 266 (409)
+|-..| ..|+.++....+.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 655443 5567766555443
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.79 E-value=0.013 Score=53.16 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=82.4
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--C-h-----------------
Q 043837 180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--N-E----------------- 239 (409)
Q Consensus 180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~-p----------------- 239 (409)
+.+.|+++.|...+.++....+......+.+.+..+.++...|+..+|+..++..+.. . +
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 3344999999999999998764432224558888999999999999999999888871 0 0
Q ss_pred --------------hcHHHHHHHHHHHHhc------cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 240 --------------ELIEALVQRGEAKLLT------EDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 240 --------------~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
....++..+|...... +..++++..|+++++++|+....+..++.....
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 1134556666666666 788899999999999999988877766665543
No 313
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.78 E-value=0.0037 Score=55.64 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=103.2
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837 78 IDKVVLVFSPACSKAKLLKVKLLLAAKD------------YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 78 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 145 (409)
+++ .+..+|.+..+|+.++...-..-. .+.-+..|++||+.+|++...+..+-.+.....+.++..+
T Consensus 8 l~~-~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 8 LNR-RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHH-HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 344 677799999999998876554432 4677889999999999999999988888889999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--------------ccchHHHH
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--------------TAHNVHLY 211 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~~ 211 (409)
-+++++..+|++..++..|......... .-.++.....|.+++..-... ......++
T Consensus 87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~---------~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYLDFRQSNFA---------SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHhc---------cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 9999999999998854444333332211 145666777777666532110 01123444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 212 LGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 212 ~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
..++......|-.+.|+..++..+++
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 55555566666666666666666665
No 314
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.75 E-value=0.0016 Score=50.79 Aligned_cols=94 Identities=19% Similarity=0.092 Sum_probs=72.1
Q ss_pred hhHHhcCCHHHHHHHHHHHHccCCCCc--------c----------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 178 EDNVSKGKLRVAVEDFKAALALDPNHT--------A----------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~al~~~~~~~--------~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
......++.+.++..+.+++.+...+. . ....+...++..+...|++++|+..+++++..+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP 93 (146)
T PF03704_consen 14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP 93 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 333445889999999999998654321 0 1234556778888899999999999999999999
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
-+..++..+-.+|...|+..+|+..|+++...
T Consensus 94 ~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 94 YDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987553
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.68 E-value=0.031 Score=48.75 Aligned_cols=171 Identities=15% Similarity=0.106 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHccCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYA---SAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA 166 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 166 (409)
..++..++.+++..+.++ +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+-... .+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~---~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES---NFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc---hHHH
Confidence 456778888998887654 4555555666667887887766666666688899999999998876441111 1111
Q ss_pred HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCccchHHHHHHHHHHHHHcCChhHH--HHHHHHHHh------
Q 043837 167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTAHNVHLYLGLCKVLVKLGRGKDA--LSSCTEALN------ 236 (409)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A--~~~~~~al~------ 236 (409)
+...+... .......|...+...+.. .|........+...+-......++.... ++.....+.
T Consensus 161 ~l~~i~~l-------~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~ 233 (278)
T PF08631_consen 161 ILHHIKQL-------AEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSL 233 (278)
T ss_pred HHHHHHHH-------HhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHh
Confidence 11111111 003445666666666542 3321000111111111111121222222 333333222
Q ss_pred ---cChhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 237 ---INEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 237 ---~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
+.+.. ...+.+.|...++.++|++|..+|+-++.
T Consensus 234 ~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 234 GKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 11211 23456678899999999999999997763
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.66 E-value=0.00039 Score=42.79 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
+.++.+|..+.++|+|++|..+.+.++++.|++.++......+...+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 457788888899999999999999999999998888777666655443
No 317
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.63 E-value=0.006 Score=55.01 Aligned_cols=171 Identities=19% Similarity=0.067 Sum_probs=108.4
Q ss_pred hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837 84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163 (409)
Q Consensus 84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (409)
..+|.+.++++.++.++..+|+.+.|.+.+++||-.........+..-..-...|. + +.--..+.|.....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~-----rL~~~~~eNR~ffla 105 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---C-----RLDYRRPENRQFFLA 105 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---c-----ccCCccccchHHHHH
Confidence 44788888888888888888888888888888764322111000000000000000 0 000012445554444
Q ss_pred HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC-CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh---
Q 043837 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN-HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE--- 239 (409)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--- 239 (409)
+......+... |-+..|.++.+-.+.++|. || ..+++.+=...++.++++--+..++.......
T Consensus 106 l~r~i~~L~~R---------G~~rTAlE~~KlLlsLdp~~DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~ 173 (360)
T PF04910_consen 106 LFRYIQSLGRR---------GCWRTALEWCKLLLSLDPDEDP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW 173 (360)
T ss_pred HHHHHHHHHhc---------CcHHHHHHHHHHHHhcCCCCCc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh
Confidence 44444444444 9999999999999999998 54 33455555566777888877877777655211
Q ss_pred --hcHHHHHHHHHHHHhccCH---------------HHHHHHHHHHHhhCCC
Q 043837 240 --ELIEALVQRGEAKLLTEDW---------------EGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 240 --~~~~~~~~la~~~~~~~~~---------------~~A~~~~~~al~~~p~ 274 (409)
.-|..-+.++.+++.+++. +.|...+++|+...|.
T Consensus 174 ~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 174 LSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1235667888899988888 8999999999999876
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.62 E-value=0.069 Score=52.24 Aligned_cols=205 Identities=17% Similarity=0.106 Sum_probs=127.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPA--------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL----- 124 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----- 124 (409)
....|.......++.+|-.++.+......+. .....-..|.+....+++++|++..+.++..-|.+.
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 3556777788899999999998844333321 235566778899999999999999999999877643
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCC--HHHHHHHHHHH----H
Q 043837 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGK--LRVAVEDFKAA----L 197 (409)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a----l 197 (409)
.++..+|.+..-.|++++|..+...+.+....+.. ....|..+ .++.....+|+ +.+....+... +
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~-------~~s~il~~qGq~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL-------QQSEILEAQGQVARAEQEKAFNLIREQHL 570 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 36778899999999999999999998876433221 11122222 22333333362 23333333322 2
Q ss_pred ccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----Chh--cH-HHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 198 ALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI----NEE--LI-EALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 198 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~--~~-~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
...|-+ ......++.++...-+++.+.......+++ .|. .. -+++.++.+++..|+.++|...+..+..
T Consensus 571 ~q~~~~----~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 571 EQKPRH----EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred hhcccc----hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222331 222233333333222355555555555543 222 22 2335899999999999999999988877
Q ss_pred hCC
Q 043837 271 QSP 273 (409)
Q Consensus 271 ~~p 273 (409)
+-.
T Consensus 647 l~~ 649 (894)
T COG2909 647 LLL 649 (894)
T ss_pred Hhc
Confidence 643
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.61 E-value=0.00011 Score=40.86 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666663
No 320
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.56 E-value=0.0032 Score=49.05 Aligned_cols=63 Identities=25% Similarity=0.113 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
..+...++..+...|++++|+..+++++..+|.+..++..+-.+|...|+...|+..|+++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456777888899999999999999999999999999999999999999999999999998754
No 321
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00017 Score=59.14 Aligned_cols=73 Identities=38% Similarity=0.570 Sum_probs=58.4
Q ss_pred hhcchhhhhhhhcccc---cCCHHHHHHHHHHHHhccCCCCCC-CchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 290 KMSKRKDWYKILGVSK---TASISEIKRAYKKLALQWHPDKNV-DNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 290 ~~~~~~~~~~~l~~~~---~~~~~e~~~~y~~~a~~~~~d~~~-~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
+..+..+.|.+||++. .+...+|.++.++....+|||+.. .-.......|+-|+.|+++|+|+.+|..||+..
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 3445578898998874 556888999999999999999852 122344568999999999999999999999854
No 322
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00025 Score=56.56 Aligned_cols=56 Identities=32% Similarity=0.592 Sum_probs=48.1
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHH-hcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYE-VLGD 351 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~-~l~d 351 (409)
-.+||.+|++...++.++++.+|.++++++|||...++. ....|..|-+||+ +|++
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a--daa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA--DAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc--cHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999876643 3457899999998 6653
No 323
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.06 Score=58.11 Aligned_cols=262 Identities=17% Similarity=0.192 Sum_probs=159.0
Q ss_pred ChHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837 3 HYSEALDDLNTAIEADPT--L--SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYI 78 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 78 (409)
.|..|+.++++. ...+. + ...++.+-.+|...++++.-...... .......+++-...-..|+|..|..+|
T Consensus 1398 ~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~----r~a~~sl~~qil~~e~~g~~~da~~Cy 1472 (2382)
T KOG0890|consen 1398 AYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR----RFADPSLYQQILEHEASGNWADAAACY 1472 (2382)
T ss_pred HHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH----hhcCccHHHHHHHHHhhccHHHHHHHH
Confidence 466777777774 22221 1 12344445588888888764433322 122234456667777789999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCChHHHHHHHH---------
Q 043837 79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR-AYYYLADHDVAQRHFQ--------- 148 (409)
Q Consensus 79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~--------- 148 (409)
++ +++.+|.....+...-.+.+..+.+...+...+-.....++..+-++.++. +-+..++|+.-..+..
T Consensus 1473 e~-~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~ 1551 (2382)
T KOG0890|consen 1473 ER-LIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSV 1551 (2382)
T ss_pred HH-hhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhH
Confidence 99 899999988888888888888889988888777776665555554444332 3355555554443321
Q ss_pred ----HHH-ccCCCcHH-------------------------HHHHHHHHHHHHH---HHHHHhhHH--------------
Q 043837 149 ----KGL-RLDPEHSE-------------------------LKKAYFALKNLLK---KTKSAEDNV-------------- 181 (409)
Q Consensus 149 ----~al-~~~p~~~~-------------------------~~~~~~~l~~~~~---~~~~~~~~~-------------- 181 (409)
+++ .....+.- ....|..+-.... .....+...
T Consensus 1552 ~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~ 1631 (2382)
T KOG0890|consen 1552 ESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDN 1631 (2382)
T ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchh
Confidence 110 00001100 0000000000000 000000000
Q ss_pred ------hc---CCHHHHHHHHHHHHc---cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 182 ------SK---GKLRVAVEDFKAALA---LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 182 ------~~---~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
.. .+..+-+-.+++++- .+|+......+.|...|++....|+++.|..++-+|.+.. -+.++..+|
T Consensus 1632 W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~A 1709 (2382)
T KOG0890|consen 1632 WKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERA 1709 (2382)
T ss_pred HHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHH
Confidence 00 112222222333321 2343333478899999999999999999999999998876 678999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhC
Q 043837 250 EAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
..++..|+-..|+..+++.++.+
T Consensus 1710 K~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1710 KLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999765
No 324
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.50 E-value=0.061 Score=47.43 Aligned_cols=196 Identities=20% Similarity=0.095 Sum_probs=136.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-
Q 043837 62 ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA----KDYASAISETGYLLKEDENNLEALLHRGRAYYY- 136 (409)
Q Consensus 62 a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 136 (409)
........++..++..+.... . -..+.....++.+|... .+..+|+..|..+. ....+.+.+.+|.+|..
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~-~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAA-E--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANG 122 (292)
T ss_pred cccccccccHHHHHHHHHHhh-h--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcC
Confidence 334455678888888887732 2 23346778888888754 46888999999554 45678899999999988
Q ss_pred ---cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837 137 ---LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213 (409)
Q Consensus 137 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 213 (409)
..+..+|..+|+++........ ......++..+..-... .--..+...|+..|.++-... ...+..+
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~a--~~~~~~l~~~~~~g~~~--~~~~~~~~~A~~~~~~aa~~~------~~~a~~~ 192 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVEA--ALAMYRLGLAYLSGLQA--LAVAYDDKKALYLYRKAAELG------NPDAQLL 192 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChhH--HHHHHHHHHHHHcChhh--hcccHHHHhHHHHHHHHHHhc------CHHHHHH
Confidence 5589999999999998754432 11355666655442100 000123357888888887765 2347888
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc---------------CHHHHHHHHHHHHhhCCC
Q 043837 214 LCKVLVK----LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE---------------DWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 214 la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---------------~~~~A~~~~~~al~~~p~ 274 (409)
+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|..++..+....+.
T Consensus 193 lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 193 LGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 8888765 4488999999999998866 78888888 666555 777777777777766554
Q ss_pred c
Q 043837 275 D 275 (409)
Q Consensus 275 ~ 275 (409)
.
T Consensus 270 ~ 270 (292)
T COG0790 270 N 270 (292)
T ss_pred h
Confidence 3
No 325
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.49 E-value=0.044 Score=49.52 Aligned_cols=171 Identities=10% Similarity=0.066 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH-HHhh---CCCCH---
Q 043837 52 LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY-LLKE---DENNL--- 124 (409)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~---~p~~~--- 124 (409)
+......++.+..+..+|+...|.+++++++-.. ..+... .+......... ...+ .+.|-
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~-----------e~~~~~--~F~~~~~~~~~g~~rL~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF-----------ERAFHP--SFSPFRSNLTSGNCRLDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------HHHHHH--HhhhhhcccccCccccCCccccchHHH
Confidence 4457778889999999999999999998832221 111100 00000000000 0111 12232
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDPE-HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH 203 (409)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 203 (409)
.+++.....+.+.|-+..|+++.+-.+.+||. ++-. ++..+-... ++.++|+--+..++........+
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g--~ll~ID~~A---------Lrs~~y~~Li~~~~~~~~~~~~~ 172 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG--VLLFIDYYA---------LRSRQYQWLIDFSESPLAKCYRN 172 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch--hHHHHHHHH---------HhcCCHHHHHHHHHhHhhhhhhh
Confidence 24566677888889999999999999999998 5542 122222111 22377776666666554421110
Q ss_pred -ccchHHHHHHHHHHHHHcCCh---------------hHHHHHHHHHHhcChhcHHHHH
Q 043837 204 -TAHNVHLYLGLCKVLVKLGRG---------------KDALSSCTEALNINEELIEALV 246 (409)
Q Consensus 204 -~~~~~~~~~~la~~~~~~~~~---------------~~A~~~~~~al~~~p~~~~~~~ 246 (409)
-...+..-+.++.++...++- +.|...+.+|+...|.-...+.
T Consensus 173 ~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll 231 (360)
T PF04910_consen 173 WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLL 231 (360)
T ss_pred hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHH
Confidence 000123778888888888888 8999999999999886544433
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.48 E-value=0.00025 Score=39.44 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDE 121 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 121 (409)
+++.+|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 327
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.083 Score=48.07 Aligned_cols=120 Identities=17% Similarity=0.107 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHccCCCCcc----------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---Chh-------cHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTA----------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNI---NEE-------LIE 243 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~ 243 (409)
|-+++|.++-++++......+. .....+.++..|-.-.|++.+|++....+.+. .|. .+.
T Consensus 289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ 368 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ 368 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence 6677888877777764322111 12344557788888899999998887777654 333 356
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHhhcchhhhhhhhcc
Q 043837 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ-DMNIREALMRAEKALKMSKRKDWYKILGV 303 (409)
Q Consensus 244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 303 (409)
.++.+|......+.+++|...|..|.++-.. +-.+.-.+..+-..+...+..++|++|..
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~ 429 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL 429 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh
Confidence 6777888888889999999999999887533 33333334444445556677888888864
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.45 E-value=0.056 Score=49.06 Aligned_cols=120 Identities=8% Similarity=-0.061 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-QSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|+...|-.-+..++...|..+......+.+...+|.|+.+.+.....-...... ...--.-...+..+++++|.....-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 566778888888999999999999999999999999999876654432221111 1112233456677899999988876
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN 122 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 122 (409)
++...-.++++...-|-..-.++-++++.-.+++++.++|.
T Consensus 383 -~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 383 -MLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred -HhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 66666677788777788888899999999999999999875
No 329
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.03 Score=51.57 Aligned_cols=247 Identities=13% Similarity=0.034 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHH---HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837 6 EALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELS---QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV 82 (409)
Q Consensus 6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 82 (409)
...+.+....+..|.++--.+..+..+...|+.+.|+......+. ........|+.+....-+.+|.+|...+.. +
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~-L 329 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL-L 329 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-H
Confidence 344555666677999999899999999999996666666666655 122345567888888888899999998887 5
Q ss_pred HhhCCCcHHHHHHHH-HHHHHc--------cCHHHHHHHHHHH---HhhCCCCHH--H-HHHHHHHHHhcCChHHHHHHH
Q 043837 83 LVFSPACSKAKLLKV-KLLLAA--------KDYASAISETGYL---LKEDENNLE--A-LLHRGRAYYYLADHDVAQRHF 147 (409)
Q Consensus 83 ~~~~p~~~~~~~~~a-~~~~~~--------~~~~~A~~~~~~a---l~~~p~~~~--~-~~~l~~~~~~~~~~~~A~~~~ 147 (409)
...+..+-..|..++ .|++.. ++-++|....+.. +...|.+.. . ....+.-+...+.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------- 401 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------- 401 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc--------
Confidence 555555555555555 444322 2333333222222 222222211 1 1111111111110
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-CCCccchHHHHHHHHHHHHHcCChhH
Q 043837 148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-PNHTAHNVHLYLGLCKVLVKLGRGKD 226 (409)
Q Consensus 148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 226 (409)
+.+..... .-+..+..++.-. ......+.. -++..+... -++.......+..+|.++..+|+...
T Consensus 402 -----~~~~~~la-~P~~El~Y~Wngf-------~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~ 467 (546)
T KOG3783|consen 402 -----LNASILLA-SPYYELAYFWNGF-------SRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEV 467 (546)
T ss_pred -----cccccccc-chHHHHHHHHhhc-------ccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 11111100 0112222222211 111122222 111111111 01222245566788999999999999
Q ss_pred HHHHHHHHHhcCh-------hcHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhCCCc
Q 043837 227 ALSSCTEALNINE-------ELIEALVQRGEAKLLTED-WEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 227 A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~ 275 (409)
|..++..+++... -.|.+++.+|..++.++. ..++.+++.+|-+...+.
T Consensus 468 a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 468 APKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 9999998884311 137899999999999999 999999999999887554
No 330
>PRK10941 hypothetical protein; Provisional
Probab=97.40 E-value=0.0024 Score=54.72 Aligned_cols=78 Identities=19% Similarity=0.061 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
......++-.+|...++++.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|+..++..++..|+++.+......
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 456677888999999999999999999999999999999999999999999999999999999999999876544333
No 331
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.40 E-value=0.11 Score=48.03 Aligned_cols=189 Identities=12% Similarity=0.012 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCChHHHHHHH
Q 043837 72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---DYASAISETGYLLKEDENNLE-ALLHRGRAYYYLADHDVAQRHF 147 (409)
Q Consensus 72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~ 147 (409)
+++..+|++.+......+...++.++..-...- .++...+.+++++.+...++. +|..+-..-.+..-...|...|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555333333334455555555433333 377777788888776444333 4445555555555678888888
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837 148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227 (409)
Q Consensus 148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 227 (409)
.+|-+.--.... ++..-+.+. +..+++..-|...|+-.++..++ .+..-......+..+++-..|
T Consensus 390 ~kaR~~~r~~hh---VfVa~A~mE--------y~cskD~~~AfrIFeLGLkkf~d----~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 390 KKAREDKRTRHH---VFVAAALME--------YYCSKDKETAFRIFELGLKKFGD----SPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHhhccCCcch---hhHHHHHHH--------HHhcCChhHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCcchhH
Confidence 888764333222 232222221 12238899999999999999988 455666667777888888999
Q ss_pred HHHHHHHHhc--Chh-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 228 LSSCTEALNI--NEE-LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 228 ~~~~~~al~~--~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
...|++++.. .|+ ..+.|...-..-..-|+...+++.-++-....|.+
T Consensus 455 R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 455 RALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 9999999876 443 45677777777788899999888888877777743
No 332
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.38 E-value=0.025 Score=50.38 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=105.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHh
Q 043837 111 SETGYLLKEDENNLEALLHRGRAYYYLAD------------HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAE 178 (409)
Q Consensus 111 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~ 178 (409)
..+++.++.+|.+.++|..+....-..-. .+.-+..|++||+.+|++.. .+..+-.+....
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~---L~l~~l~~~~~~---- 78 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER---LLLGYLEEGEKV---- 78 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh----
Confidence 46788899999999999988876655432 45678899999999999888 444444444444
Q ss_pred hHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH---HcCChhHHHHHHHHHHhcCh----------------
Q 043837 179 DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV---KLGRGKDALSSCTEALNINE---------------- 239 (409)
Q Consensus 179 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p---------------- 239 (409)
-+.++....+++++..+|+ +..+|..+-.... ..-.+......|.+++..-.
T Consensus 79 -----~~~~~l~~~we~~l~~~~~----~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~ 149 (321)
T PF08424_consen 79 -----WDSEKLAKKWEELLFKNPG----SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPEL 149 (321)
T ss_pred -----CCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhH
Confidence 6778888899999999998 4555554333222 23356677777777765311
Q ss_pred --hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 240 --ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 240 --~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
....++..+.......|-.+.|+..++..++++
T Consensus 150 e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 150 EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 123556677778889999999999999999986
No 333
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.35 E-value=0.035 Score=52.98 Aligned_cols=34 Identities=12% Similarity=-0.026 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
++++..++..+...|++++|.+.|-++++++.-+
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 4556777788888999999999999999987554
No 334
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.31 E-value=0.14 Score=49.53 Aligned_cols=246 Identities=16% Similarity=0.120 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHhHHHHHHHHHHH------HHHHHHHHHHHHHhC----C
Q 043837 5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQL-----CRVKARNSVAEKELSQLL------QAQSTFDSALKLYDS----G 69 (409)
Q Consensus 5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~------~~~~~~~~a~~~~~~----~ 69 (409)
..|...++.+... .+..+...+|.||..- .+.+.|+..+..+..... .....+..+..++.. .
T Consensus 229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 4677777766555 4677888888888755 567888777777766211 122345666666663 2
Q ss_pred -CchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----CChH
Q 043837 70 -EYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---DYASAISETGYLLKEDENNLEALLHRGRAYYYL----ADHD 141 (409)
Q Consensus 70 -~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~ 141 (409)
++..|+.+|.+ +.. -.++.+.+.+|.++..-. ++..|..+|..|... .+..+.+.++.+|..- .+..
T Consensus 307 ~d~~~A~~~~~~-aA~--~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 307 IDYEKALKLYTK-AAE--LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccHHHHHHHHHH-HHh--cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 67789999977 333 345678888888888765 578899999988764 4678888888888753 5788
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc
Q 043837 142 VAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL 221 (409)
Q Consensus 142 ~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~ 221 (409)
.|..+++++....+ +. +...++..+... . +.+..+...+.......-..+..+...+..........
T Consensus 382 ~A~~~~k~aA~~g~--~~---A~~~~~~~~~~g-------~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN--PS---AAYLLGAFYEYG-------V-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFS 448 (552)
T ss_pred HHHHHHHHHHHccC--hh---hHHHHHHHHHHc-------c-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccc
Confidence 89999999888772 22 233333333221 0 33333333333333222211110111111111111111
Q ss_pred C----ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc----cCHHHHHHHHHHHHhhC
Q 043837 222 G----RGKDALSSCTEALNINEELIEALVQRGEAKLLT----EDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 222 ~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~ 272 (409)
. +...+...+.++.. ..++.+...++.+|..- .+++.|...|.++....
T Consensus 449 ~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred cccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 1 22334444444322 34566667777776654 35777777777776654
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.31 E-value=0.00052 Score=37.74 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777777665
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.24 E-value=0.013 Score=43.51 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHcCC---hhHHHHHHHHHHh-cCh-hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGR---GKDALSSCTEALN-INE-ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
.....+++++++....+ ..+.+..++..++ -+| ..-+..+.+|..+.++++|+.|+.+....++..|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 46688899999988765 4678889999986 444 346788899999999999999999999999999999998877
Q ss_pred HHHHHHHHh
Q 043837 282 LMRAEKALK 290 (409)
Q Consensus 282 l~~~~~~~~ 290 (409)
-..++..+.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 666665554
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.24 E-value=0.063 Score=51.80 Aligned_cols=251 Identities=17% Similarity=0.093 Sum_probs=163.7
Q ss_pred CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----ChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhC---
Q 043837 2 KHYSEALDDLNTAIEA-----DPTLSEAYFHRGSVLRQLC-----RVKARNSVAEKELSQLLQAQSTFDSALKLYDS--- 68 (409)
Q Consensus 2 g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 68 (409)
.+.+.|+.+|..+... .-..+.+...+|.+|.+-. +...|...+..+-. .......+..+..+...
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~~~a~~~lg~~~~~g~~~ 341 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGNPDAQYLLGVLYETGTKE 341 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCCchHHHHHHHHHHcCCcc
Confidence 4788999999998771 1125567889999998854 45556666655443 22234445555555443
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CChHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA----KDYASAISETGYLLKEDENNLEALLHRGRAYYYL-ADHDVA 143 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A 143 (409)
.++..|.++|..++ .-.+..+.+.++.||..- .+...|..+++++.+.. ++.+.+.++..+..- +.++.+
T Consensus 342 ~d~~~A~~yy~~Aa---~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAA---KAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred ccHHHHHHHHHHHH---HcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence 36789999997733 346789999999999753 58899999999999987 455566666555443 777777
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHh---cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS---KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK 220 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~ 220 (409)
...+.....+--........+...... ..... ..+...+...+.++.... +..+...++.+|..
T Consensus 417 ~~~~~~~a~~g~~~~q~~a~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~g------~~~a~~~lgd~y~~ 483 (552)
T KOG1550|consen 417 LALYLYLAELGYEVAQSNAAYLLDQSE-------EDLFSRGVISTLERAFSLYSRAAAQG------NADAILKLGDYYYY 483 (552)
T ss_pred HHHHHHHHHhhhhHHhhHHHHHHHhcc-------ccccccccccchhHHHHHHHHHHhcc------CHHHHhhhcceeee
Confidence 766665554433222211111111110 00011 134556666666655433 34477888888876
Q ss_pred c----CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc---cCHHHHHHHHHHHHhhCCC
Q 043837 221 L----GRGKDALSSCTEALNINEELIEALVQRGEAKLLT---EDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 221 ~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~ 274 (409)
- .+++.|...|..+.... +...+++|.++..- ..+..|..+|.++.+.+..
T Consensus 484 g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 484 GLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred cCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 4 46899999999998776 88999999998642 2278999999998887654
No 338
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.22 E-value=0.00036 Score=39.39 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=14.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
+..+|.+|..+|+|++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666666443
No 339
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.22 E-value=0.0061 Score=43.68 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=74.9
Q ss_pred HHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC-----------hhHHHHHHHHHHhcChhcHHH
Q 043837 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR-----------GKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~ 244 (409)
++..++.+|++-+|+++.+..+...+++.. .+.++..-|.++..+.. .-.+++++.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 466778889999999999999998887653 33566777777765432 246888999999999999888
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
++.+|.-+-...-|++++.-.++++.+.
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 8888887777777888888777777653
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.21 E-value=0.00078 Score=37.04 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDEN 122 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 122 (409)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 341
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.049 Score=49.47 Aligned_cols=174 Identities=14% Similarity=0.011 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKE---DEN-------NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
.+-.++.|-+-.|++.+|++....+.+. .|. .+..++.+|......+.++.|...|..|.++-....-..
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 4456778888999999999988877654 344 344678899999999999999999999998754433222
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc------chHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA------HNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
-.-.+++.+|... ++-+.-.+.+ -.+.|.+.. ....+++..|...+.++++.+|...+.+.+
T Consensus 405 ~~nlnlAi~YL~~---------~~~ed~y~~l---d~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 405 FCNLNLAISYLRI---------GDAEDLYKAL---DLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HHHHhHHHHHHHh---------ccHHHHHHHH---HhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2334445555443 5543332222 234454321 134567778888899999999999999999
Q ss_pred hcChh------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 236 NINEE------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 236 ~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
+.... ..-.+..++.+....|+..++.....-++.+..+.++
T Consensus 473 kmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 473 KMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 87521 2445677899999999999999988888877654443
No 342
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.20 E-value=0.13 Score=48.22 Aligned_cols=192 Identities=15% Similarity=0.009 Sum_probs=145.1
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCcHHHHHHHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD-PEHSELKKAYFAL 167 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~l 167 (409)
....|......-...|+++...-.|++++--.....+.|...+......|+.+-|-..+.++.++. |..+. .+..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~---i~L~~ 372 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI---IHLLE 372 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH---HHHHH
Confidence 345677777778899999999999999999888889999999999999999999999998888864 44444 45555
Q ss_pred HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHH---HHHHHHhc--Ch-hc
Q 043837 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALS---SCTEALNI--NE-EL 241 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~--~p-~~ 241 (409)
+.+.... |++..|...++....-.|. ...+-..........|+.+.+.. .+.....- ++ -.
T Consensus 373 a~f~e~~---------~n~~~A~~~lq~i~~e~pg----~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~ 439 (577)
T KOG1258|consen 373 ARFEESN---------GNFDDAKVILQRIESEYPG----LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGIL 439 (577)
T ss_pred HHHHHhh---------ccHHHHHHHHHHHHhhCCc----hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchh
Confidence 5555555 9999999999999988888 66677777778888888888874 33322221 11 12
Q ss_pred HHHHHHHHHH-HHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhh
Q 043837 242 IEALVQRGEA-KLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKD 296 (409)
Q Consensus 242 ~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 296 (409)
...+...++. +.-.++.+.|...+.++++..|++......+...........+.+
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d 495 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYD 495 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhh
Confidence 3444555554 345678999999999999999999998888877766555444433
No 343
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.19 E-value=0.0049 Score=44.15 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=69.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHH
Q 043837 61 SALKLYDSGEYTKPLEYIDKVVLVFSPACS---KAKLLKVKLLLAAKD-----------YASAISETGYLLKEDENNLEA 126 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~ 126 (409)
+|..++..|++-+|+++.++ .+...+++. ..+...|.++..+.. .-.+++++.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied-~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIED-LISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHH-HHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 46778888888888888888 555555544 455556666654432 346889999999999999888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837 127 LLHRGRAYYYLADHDVAQRHFQKGLRLD 154 (409)
Q Consensus 127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~ 154 (409)
++.+|.-+-....|++++.-.+++|...
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 8888888777777888888888888753
No 344
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.0033 Score=57.29 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=88.1
Q ss_pred HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG---RGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
.+..+...+....+..|+..|.+++...|. ...++.+++.++++.+ +.-.|+..+..+++++|....+++.++
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPD----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccc----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 344555666667889999999999999999 7889999999988754 566899999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837 250 EAKLLTEDWEGAVEDLKSAAQQSPQDMNI 278 (409)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 278 (409)
.++..++++.+|+.+...+....|.+...
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 99999999999999999888888866543
No 345
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.15 E-value=0.18 Score=45.57 Aligned_cols=126 Identities=7% Similarity=0.039 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHH------HHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 25 YFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTF------DSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVK 98 (409)
Q Consensus 25 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~ 98 (409)
+...|-++..++++.+|...+.+...........+ .+.+..+-..+.+.-...+.. ..+..|.++...+..|.
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~-l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLME-LRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH-HHHhcCCchHHHHHHHH
Confidence 34456667777777777766666655443332222 233344444555554444444 45556666666777777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCC-------------HHHH--HHHHHHHHhcCChHHHHHHHHHHH
Q 043837 99 LLLAAKDYASAISETGYLLKEDENN-------------LEAL--LHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~--~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
..++.+++.+|++.+...-..-... ++.+ ...+.++..+|++.++...+++.+
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 7777777777777665544331110 1111 245666677777777776666654
No 346
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.07 E-value=0.08 Score=46.22 Aligned_cols=153 Identities=16% Similarity=0.077 Sum_probs=100.9
Q ss_pred HhcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHHHHHHHhhHHhcC-CHHHHHHHHHHHHccC----CC---Cc-
Q 043837 135 YYLADHDVAQRHFQKGLRLD-PEHSELKKAYFALKNLLKKTKSAEDNVSKG-KLRVAVEDFKAALALD----PN---HT- 204 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~----~~---~~- 204 (409)
..+|+.+.|..++.++-... ..++. ....++.++... +...++.+ +++.|+.+++++.++. +. .+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~---~~~~La~~~yn~--G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPD---MAEELARVCYNI--GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcH---HHHHHHHHHHHH--HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 56788889998888876654 33333 334444444333 45555558 9999999999998872 21 11
Q ss_pred --cchHHHHHHHHHHHHHcCChh---HHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC-CcHHH
Q 043837 205 --AHNVHLYLGLCKVLVKLGRGK---DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP-QDMNI 278 (409)
Q Consensus 205 --~~~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 278 (409)
.....++..++.+|...+.++ +|....+.+-...|+.+..+...-.+..+.++.+++.+.+.+++..-+ .....
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 124567788999999888765 344455555555678788886666666668999999999999988765 44444
Q ss_pred HHHHHHHHHHHhhc
Q 043837 279 REALMRAEKALKMS 292 (409)
Q Consensus 279 ~~~l~~~~~~~~~~ 292 (409)
...+..+.......
T Consensus 159 ~~~l~~i~~l~~~~ 172 (278)
T PF08631_consen 159 DSILHHIKQLAEKS 172 (278)
T ss_pred HHHHHHHHHHHhhC
Confidence 44444444444433
No 347
>PRK10941 hypothetical protein; Provisional
Probab=97.07 E-value=0.0095 Score=51.08 Aligned_cols=70 Identities=21% Similarity=0.133 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
....++-.+|.+.++++.|+.+.+.++.+.|+++.-+.-+|.+|.+++.+..|...++..++..|+++..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3456677789999999999999999999999999999999999999999999999999999999999874
No 348
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.06 E-value=0.003 Score=53.55 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837 53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGR 132 (409)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 132 (409)
..+......|....+.|+.++|..+|+. ++.+.|.++.++...|......++.-+|-.+|-+++.++|.+.+++.+...
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeH-AlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEH-ALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHH-HHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3455566677777788888888888887 788888888888888888888888888888888888888888887776654
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.05 E-value=0.0035 Score=57.81 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=86.8
Q ss_pred CCCchHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043837 68 SGEYTKPLEYIDKVVLVFSPAC-SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRH 146 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 146 (409)
.|+...|+.++.. ++...|.. .-...++|.+.+..+-..+|-..+.+++.+....+-.++.+|..+..+.+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~-a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQR-ALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHH-HhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 5999999999988 66666654 345788999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHccCCCcHHHHHHHHHHH
Q 043837 147 FQKGLRLDPEHSELKKAYFALK 168 (409)
Q Consensus 147 ~~~al~~~p~~~~~~~~~~~l~ 168 (409)
|+.|++++|++..+...+..++
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999998655444443
No 350
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.04 E-value=0.0095 Score=41.66 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHhh
Q 043837 227 ALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD--MNIREALMRAEKALKM 291 (409)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 291 (409)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..++..+..+...+..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567788888899999999999999999999999999999999888765 5666666666555543
No 351
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=97.00 E-value=0.0034 Score=61.65 Aligned_cols=16 Identities=44% Similarity=0.979 Sum_probs=7.5
Q ss_pred cCCCCCCCCCCCCCCC
Q 043837 387 FEGGFPGGFGGDGGFP 402 (409)
Q Consensus 387 ~~gg~~gg~~~~gg~~ 402 (409)
|+|||||||||++|-|
T Consensus 624 ~~~~~~~~~~~~~~~~ 639 (653)
T PTZ00009 624 MPGGMPGGMPGGAGPA 639 (653)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 4455555555444333
No 352
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.99 E-value=0.0049 Score=37.97 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 127 LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
++.+|..++++|+|++|..+.+.+|+.+|++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 444555555555555555555555555555554
No 353
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.96 E-value=0.0011 Score=37.33 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 210 LYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
++.++|.+|..+|+|++|+.+|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999776543
No 354
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.93 E-value=0.0047 Score=52.44 Aligned_cols=73 Identities=29% Similarity=0.312 Sum_probs=62.7
Q ss_pred HHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHH
Q 043837 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAK 252 (409)
Q Consensus 176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 252 (409)
.+......|+.++|...|+.|+.+.|+ ++.++..+|......++.-+|-.+|-+|+.++|.+.+++.++++..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~----~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPT----NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCC----CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 344445559999999999999999999 6779999999998889999999999999999999999998887643
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.11 Score=40.59 Aligned_cols=123 Identities=16% Similarity=0.091 Sum_probs=77.0
Q ss_pred HHHHHHcCChHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC--c--HHHHHHHHHHHH
Q 043837 29 GSVLRQLCRVKARNSVAEKELSQ---LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA--C--SKAKLLKVKLLL 101 (409)
Q Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~--~--~~~~~~~a~~~~ 101 (409)
+.-+.+.+..++|+..+...-.. .......+..+.....+|+-..|+..|++ +....|- - ..+.+.-+.++.
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFde-ia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDE-IAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHH-HhccCCCcchhhHHHHHHHHHHHh
Confidence 34445556666666655544331 23345556677777778888888888887 3333222 1 234455566777
Q ss_pred HccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 102 AAKDYASAISETGYLL-KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 102 ~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
..|.|++.....+.+- ..+|-...+.-.||..-++.|++..|.+.|.....
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7888887766655543 22344445666788888888888888888888666
No 356
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.87 E-value=0.017 Score=58.57 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHhCCCchHHHH------HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLE------YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-------- 119 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~------~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------- 119 (409)
.+...++.+......+.+.+|.+ ++........|.....+..++.++..++++++|+....++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34455666666677777776766 7776667778999999999999999999999999998888654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH
Q 043837 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK 194 (409)
Q Consensus 120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~ 194 (409)
.|+....+.+++...+..++...|+..+.+++.+ .|+++.......++..++..+ ++++.|+.+++
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v---------~e~d~al~~le 1081 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV---------EEADTALRYLE 1081 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH---------HHHHHHHHHHH
Confidence 2445567889999999999999999999888764 355665555667777777766 88999999999
Q ss_pred HHHccCCC----CccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837 195 AALALDPN----HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 195 ~al~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 234 (409)
.|+.++.. ........+..++.++..++++..|+...+..
T Consensus 1082 ~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1082 SALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred HHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 99885432 00113444445555555555554444444433
No 357
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.86 E-value=0.027 Score=46.66 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHcc---CCCCccchHHHHHHHHHHHHHcCChhH-------HHHHHHHHHhcCh------hcHHHHHH
Q 043837 184 GKLRVAVEDFKAALAL---DPNHTAHNVHLYLGLCKVLVKLGRGKD-------ALSSCTEALNINE------ELIEALVQ 247 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~la~~~~~~~~~~~-------A~~~~~~al~~~p------~~~~~~~~ 247 (409)
..+++|++.|.-|+-. ....+...+.+++.+|++|...++.+. |+..|.++++... +...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 5778888888777652 122222367889999999999999554 5555555554322 23678889
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837 248 RGEAKLLTEDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 248 la~~~~~~~~~~~A~~~~~~al~~~p~~~ 276 (409)
+|.+..++|++++|+.+|.+++.....+.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999998654433
No 358
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.84 E-value=0.099 Score=50.08 Aligned_cols=16 Identities=0% Similarity=-0.153 Sum_probs=10.0
Q ss_pred HHHHHHcCChHHHhHH
Q 043837 29 GSVLRQLCRVKARNSV 44 (409)
Q Consensus 29 a~~~~~~g~~~~A~~~ 44 (409)
..+|.+.|....|...
T Consensus 622 iqlyika~~p~~a~~~ 637 (1636)
T KOG3616|consen 622 IQLYIKAGKPAKAARA 637 (1636)
T ss_pred HHHHHHcCCchHHHHh
Confidence 3567777777666443
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.83 E-value=0.027 Score=39.41 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=26.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837 110 ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157 (409)
Q Consensus 110 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 157 (409)
+..+++.+..+|++..+.+.++..+...|++++|++.+-.++..+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344555555666666666666666666666666666666666655443
No 360
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.83 E-value=0.096 Score=37.96 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=58.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837 97 VKLLLAAKDYASAISETGYLLKEDENN------------LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164 (409)
Q Consensus 97 a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 164 (409)
|.-.+.-|-|++|...+.++++...+- .-.+-.|+.++..+|+|++++..-.++|..
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y----------- 84 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY----------- 84 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----------
Confidence 334456677888888888888764332 224567777888888888777766665532
Q ss_pred HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
|++-=++..+.......+.++++.++..+|+.++|+..|+.+-+.
T Consensus 85 ----------------------------FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 85 ----------------------------FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp ----------------------------HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ----------------------------HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 111112222211113334556777777777777777777776543
No 361
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.81 E-value=0.035 Score=42.97 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=76.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL 137 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 137 (409)
.+......+..++.+++..++.. +..+.|..+.+-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|++.+
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~A-LrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDA-LRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHH-HHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444555666788888888876 78889999999999999999999999999999999999999998888999999999
Q ss_pred CChHHHHHHHHHHHccCCC
Q 043837 138 ADHDVAQRHFQKGLRLDPE 156 (409)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~ 156 (409)
++.+-= .+-..++...++
T Consensus 92 ~D~~Wr-~~A~evle~~~d 109 (160)
T PF09613_consen 92 GDPSWR-RYADEVLESGAD 109 (160)
T ss_pred CChHHH-HHHHHHHhcCCC
Confidence 886532 223344554443
No 362
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.32 Score=42.36 Aligned_cols=270 Identities=19% Similarity=0.204 Sum_probs=158.0
Q ss_pred ChHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCChHHHhHHHHHHHH---HHHHHH--HHHHHHHHHH-
Q 043837 3 HYSEALDDLNTAIEA--DPTL--------SEAYFHRGSVLRQLCRVKARNSVAEKELS---QLLQAQ--STFDSALKLY- 66 (409)
Q Consensus 3 ~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~--~~~~~a~~~~- 66 (409)
++++++..|.+++.. .|.+ ......++..|.+.|+..+-.......-. ....+. ....--...+
T Consensus 19 ~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~ 98 (411)
T KOG1463|consen 19 QVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFL 98 (411)
T ss_pred hhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 568899999998874 2221 25678899999999998764332222111 111110 0011111111
Q ss_pred -hCCCchHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHH
Q 043837 67 -DSGEYTKPLEYIDKVVLVFSPAC------SKAKLLKVKLLLAAKDYASAISETGYLLKE----D--ENNLEALLHRGRA 133 (409)
Q Consensus 67 -~~~~~~~A~~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~ 133 (409)
.....+.-+.++.. +++..... ...-..+...|...++|.+|+......++- + +.-.+++..-+.+
T Consensus 99 ~~~~~~~~~i~l~~~-cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~ 177 (411)
T KOG1463|consen 99 KIDDGTGDQIELCTE-CIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKA 177 (411)
T ss_pred cCCCCcchHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHH
Confidence 12344455555554 33322211 123345788999999999999988877652 2 2234577788899
Q ss_pred HHhcCChHHHHHHHHHHHccC-----CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--C-cc
Q 043837 134 YYYLADHDVAQRHFQKGLRLD-----PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--H-TA 205 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~-~~ 205 (409)
|+.+.+..+|...+..|-... |.... +- ..+..+-......+|..|..+|-++++-... + ..
T Consensus 178 y~~l~Nl~KakasLTsART~AnaiYcpPqlQ---a~-------lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 178 YHALRNLPKAKASLTSARTTANAIYCPPQLQ---AT-------LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred HHHHhcchhHHHHHHHHHHhhcccccCHHHH---HH-------HHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 999999999998888775532 21111 11 1111122222238999999999999984332 1 11
Q ss_pred -chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837 206 -HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL--TEDWEGAVEDLKSAAQQSPQDMNIREAL 282 (409)
Q Consensus 206 -~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l 282 (409)
....-|..++.+....-+--.++-.-+.+++....+.++....|.++.+ +.+|+.|+..|+.-+..+| -++..+
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl 324 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHL 324 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHH
Confidence 0122233444444433333344555566777788889999999998865 5789999999988777655 344444
Q ss_pred HHHH
Q 043837 283 MRAE 286 (409)
Q Consensus 283 ~~~~ 286 (409)
..++
T Consensus 325 ~~Ly 328 (411)
T KOG1463|consen 325 QSLY 328 (411)
T ss_pred HHHH
Confidence 4443
No 363
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.057 Score=49.31 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 043837 73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLAD-HDVAQRHFQKGL 151 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al 151 (409)
.-+..|.. +....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++|
T Consensus 89 rIv~lyr~-at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRR-ATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHH-HHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 33455655 6777788999999998888888889999999999999999999999988888777776 999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHH
Q 043837 152 RLDPEHSELKKAYFALKNLL 171 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~ 171 (409)
..+|+++.++..++.+-..+
T Consensus 168 R~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred hcCCCChHHHHHHHHHHHHH
Confidence 99999999766666654444
No 364
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.76 E-value=0.072 Score=41.30 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
....+..+..+-...++.+++...+...--+.|+.++.-..-|.+++..|+|.+|+..++.+.+..|..+-....+..|.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44566677777778888888888888888888999998888999999999999999999988888888888888888887
Q ss_pred HHHhhc
Q 043837 287 KALKMS 292 (409)
Q Consensus 287 ~~~~~~ 292 (409)
..++..
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 766543
No 365
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.028 Score=51.15 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=80.7
Q ss_pred HHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccC-HHHHHHHHH
Q 043837 188 VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTED-WEGAVEDLK 266 (409)
Q Consensus 188 ~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~ 266 (409)
.-+..|+.++...+. +..+|.+......+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...+.
T Consensus 89 rIv~lyr~at~rf~~----D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNG----DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHhcCC----CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 456678888888887 566888887777777779999999999999999999999999998888776 999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHH
Q 043837 267 SAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 267 ~al~~~p~~~~~~~~l~~~~ 286 (409)
++++.+|+++.++...-+++
T Consensus 165 rgLR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKEYFRME 184 (568)
T ss_pred HHhhcCCCChHHHHHHHHHH
Confidence 99999999999887655544
No 366
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.16 Score=47.41 Aligned_cols=139 Identities=24% Similarity=0.168 Sum_probs=94.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 043837 104 KDYASAISETGYLLKEDENNLEALLH--RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNV 181 (409)
Q Consensus 104 ~~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 181 (409)
+...-++..+...+.++|.++..+.. ++..+...+....+...+..++..+|++.. .+.+++......
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~L~~ale~~------- 114 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCP---AVQNLAAALELD------- 114 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccch---HHHHHHHHHHHh-------
Confidence 33444667777777778888776543 477777778888888888888888888887 777777766654
Q ss_pred hcCCHHHHHHHHH-HHHccCCCCccchHHHHHHH------HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837 182 SKGKLRVAVEDFK-AALALDPNHTAHNVHLYLGL------CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL 254 (409)
Q Consensus 182 ~~~~~~~A~~~~~-~al~~~~~~~~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 254 (409)
+....++..+. .+....|+ +......+ +.....+++..++.....++..+.|.++.+...+.....+
T Consensus 115 --~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 115 --GLQFLALADISEIAEWLSPD----NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred --hhHHHHHHHHHHHHHhcCcc----hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 55555554444 47777887 44444433 7777778888888888888888888876666555555433
Q ss_pred ccCH
Q 043837 255 TEDW 258 (409)
Q Consensus 255 ~~~~ 258 (409)
...|
T Consensus 189 ~cs~ 192 (620)
T COG3914 189 QCSW 192 (620)
T ss_pred hccc
Confidence 3333
No 367
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.59 Score=44.81 Aligned_cols=128 Identities=11% Similarity=0.065 Sum_probs=69.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHH-----H---HHHHH-HHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837 13 TAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKE-----L---SQLLQ-AQSTFDSALKLYDSGEYTKPLEYIDKVVL 83 (409)
Q Consensus 13 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-----l---~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 83 (409)
+-++.+| .+..|..+|...+..-.++-|...+.+. + ..... .....++|...---|++++|.+.|-. +
T Consensus 684 qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld-~- 760 (1189)
T KOG2041|consen 684 QFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD-A- 760 (1189)
T ss_pred HHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc-c-
Confidence 3455566 4678888888777766666664444331 1 11111 01112333333334778888777744 1
Q ss_pred hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
+ -.-.....+..+|+|-....+++..-.-+.+ -..++.++|..+..+..|++|.++|..+
T Consensus 761 --d-----rrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 761 --D-----RRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred --c-----hhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1122234556667776666655543221111 2346777777777777777777777664
No 368
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.62 E-value=0.042 Score=44.15 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 127 LLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 127 ~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+..+|..|...|+.+.|++.|.++..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 33444444444444444444444433
No 369
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.60 E-value=0.66 Score=43.68 Aligned_cols=179 Identities=13% Similarity=0.029 Sum_probs=130.9
Q ss_pred HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcCChHH
Q 043837 64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-DENNLEALLHRGRAYYYLADHDV 142 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~ 142 (409)
.-...|+++.....|++ ++--.......|...+.-....|+..-|-..+..+.++ .|..+..+..-+.+-...|++..
T Consensus 306 f~i~~g~~~~~~~l~er-cli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 306 FEITLGDFSRVFILFER-CLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhhcccHHHHHHHHHH-HHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence 33566999999999998 66556678899999999999999999999988888886 46677788888889999999999
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH---HHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837 143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE---DFKAALALDPNHTAHNVHLYLGLCKVLV 219 (409)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~---~~~~al~~~~~~~~~~~~~~~~la~~~~ 219 (409)
|...++++..-.|.... +-.......... ++.+.+.. .+..... ...+.......+...+....
T Consensus 385 A~~~lq~i~~e~pg~v~---~~l~~~~~e~r~---------~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 385 AKVILQRIESEYPGLVE---VVLRKINWERRK---------GNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHHHHHHhhCCchhh---hHHHHHhHHHHh---------cchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHH
Confidence 99999999987787766 322333333333 77777763 3333222 22222224445556665543
Q ss_pred -HcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837 220 -KLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE 256 (409)
Q Consensus 220 -~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 256 (409)
-.++.+.|...+.+++...|.+...+..+-.......
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 4567899999999999999999888877766655444
No 370
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.58 E-value=0.08 Score=43.94 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=72.2
Q ss_pred hcCChHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHH
Q 043837 136 YLADHDVAQRHFQKGLR----LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVH 209 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 209 (409)
....+++|++.|.-|+- ...++......+..++.++...+ +...+..-+..|+..|.+++..... .......
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~--~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLG--DEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 34456777777776664 23344444556777777777661 1222223356677777777765432 2223577
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH-HHHHHHHH
Q 043837 210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELI-EALVQRGE 250 (409)
Q Consensus 210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~ 250 (409)
+.+.+|.+..+.|++++|+.+|.+++.....+. ..+..+|+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 899999999999999999999999998643322 34444443
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.55 E-value=0.0042 Score=33.46 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
++..+|.++...+++++|+..+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455556666666666666666666555543
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.55 E-value=0.93 Score=44.82 Aligned_cols=233 Identities=15% Similarity=0.035 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc-
Q 043837 21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQL----------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC- 89 (409)
Q Consensus 21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~- 89 (409)
++...+..+.......++.+|.....+..... ..+...--+|......++.+.|+.+.+. ++..-|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~-al~~L~~~~ 492 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL-ALVQLPEAA 492 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhccccc
Confidence 34555666777888899999877766554422 2233344577788899999999999998 55544432
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----CC--HHHHHHHHHHHHhcCChH--HHHHHHHHHH----cc
Q 043837 90 ----SKAKLLKVKLLLAAKDYASAISETGYLLKEDE----NN--LEALLHRGRAYYYLADHD--VAQRHFQKGL----RL 153 (409)
Q Consensus 90 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~--~~~~~~l~~~~~~~~~~~--~A~~~~~~al----~~ 153 (409)
..++...+.+..-.|++++|......+.+... .. ..+.+..+.++..+|+.. +....+...- ..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 45677788999999999999999999887632 22 234456788889999433 3333332221 12
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc----CCCCccchHHHHHHHHHHHHHcCChhHHHH
Q 043837 154 DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL----DPNHTAHNVHLYLGLCKVLVKLGRGKDALS 229 (409)
Q Consensus 154 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 229 (409)
.|-+.-....+..+..++. +++.+.......+++ .|..-. ..-.++.++.+....|++++|..
T Consensus 573 ~~~~~f~~~~r~~ll~~~~------------r~~~~~~ear~~~~~~~~~~~~~~~-~~~~~~~LA~l~~~~Gdl~~A~~ 639 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWL------------RLDLAEAEARLGIEVGSVYTPQPLL-SRLALSMLAELEFLRGDLDKALA 639 (894)
T ss_pred cccchhHHHHHHHHHHHHH------------HHhhhhHHhhhcchhhhhcccchhH-HHHHHHHHHHHHHhcCCHHHHHH
Confidence 2333222222333333322 234444444444332 232111 22333589999999999999999
Q ss_pred HHHHHHhcChhc-------HHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837 230 SCTEALNINEEL-------IEALVQRGEAKLLTEDWEGAVEDLKS 267 (409)
Q Consensus 230 ~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~ 267 (409)
.+.+...+-.+. ..++.........+|+...|.....+
T Consensus 640 ~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 640 QLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 998887653221 12222233345567899999888877
No 373
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=1 Score=45.24 Aligned_cols=218 Identities=12% Similarity=0.047 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh--------------
Q 043837 20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF-------------- 85 (409)
Q Consensus 20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 85 (409)
+.+..|..+|.+.++.+...+|+..+.++-. ...+.+-....-+.|.|++-+.++.- +.+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikadD----ps~y~eVi~~a~~~~~~edLv~yL~M-aRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKADD----PSNYLEVIDVASRTGKYEDLVKYLLM-ARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcCC----cHHHHHHHHHHHhcCcHHHHHHHHHH-HHHhhcCccchHHHHHHH
Confidence 6788999999999999999999887765421 11222222223334555555555432 1111
Q ss_pred --------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 86 --------------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 86 --------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
.|+.+. .-..|.-++..+.|+.|.-+|. +..-|-.++..+..+|+|..|...-++|-
T Consensus 1177 Akt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 122221 1223444444455555544443 23356788889999999999998888864
Q ss_pred ccCCCcHHHHHHHHHHHHHHHH---------------------HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHH
Q 043837 152 RLDPEHSELKKAYFALKNLLKK---------------------TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHL 210 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 210 (409)
.. . .|..+...... -+..+.+-++|-+++-+..++.++-+... ....
T Consensus 1248 s~-----k---tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA----HMgm 1315 (1666)
T KOG0985|consen 1248 ST-----K---TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA----HMGM 1315 (1666)
T ss_pred ch-----h---HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH----HHHH
Confidence 32 1 22222222111 11233344569999999999999988877 5567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhc-C-h------hcHHHHHHHHHHHHhccCHHHHHHH
Q 043837 211 YLGLCKVLVKLGRGKDALSSCTEALNI-N-E------ELIEALVQRGEAKLLTEDWEGAVED 264 (409)
Q Consensus 211 ~~~la~~~~~~~~~~~A~~~~~~al~~-~-p------~~~~~~~~la~~~~~~~~~~~A~~~ 264 (409)
+..+|.+|.+- ++++-.++++--... + | +....|..+..+|.+-..|+.|.-.
T Consensus 1316 fTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1316 FTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 77888777654 345555555433321 1 1 3456677788888888888877543
No 374
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.26 Score=46.17 Aligned_cols=149 Identities=13% Similarity=0.013 Sum_probs=105.5
Q ss_pred HHhCCCchH-HHHHHHHHHHhhCCCcHHHHHH--HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH
Q 043837 65 LYDSGEYTK-PLEYIDKVVLVFSPACSKAKLL--KVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD 141 (409)
Q Consensus 65 ~~~~~~~~~-A~~~~~~~~~~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 141 (409)
.+..+.... ++..+.. -+..+|.++..... +...+...++...+.-....++..+|++..++.+++.+....+...
T Consensus 40 ~l~~~~~~~~~~~a~~~-~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~ 118 (620)
T COG3914 40 WLNAEGLQALAIYALLL-GIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF 118 (620)
T ss_pred HhcccCchhHHHHHHHc-cCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH
Confidence 344444444 4444433 45567777766443 4777788899989999999999999999999999999988888777
Q ss_pred HHHHHHHH-HHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837 142 VAQRHFQK-GLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK 220 (409)
Q Consensus 142 ~A~~~~~~-al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~ 220 (409)
.++..+.. +....|++.. ....+-.++. + +...-..++..++...+.++..+.|. ...+...+.....+
T Consensus 119 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~-~--~~~~~~l~~~~~~~~~l~~~~d~~p~----~~~~~~~~~~~r~~ 188 (620)
T COG3914 119 LALADISEIAEWLSPDNAE---FLGHLIRFYQ-L--GRYLKLLGRTAEAELALERAVDLLPK----YPRVLGALMTARQE 188 (620)
T ss_pred HHHHHHHHHHHhcCcchHH---HHhhHHHHHH-H--HHHHHHhccHHHHHHHHHHHHHhhhh----hhhhHhHHHHHHHH
Confidence 76666665 8888999887 5555555554 3 44445568889999999999999999 44444444444333
Q ss_pred cCCh
Q 043837 221 LGRG 224 (409)
Q Consensus 221 ~~~~ 224 (409)
.-.+
T Consensus 189 ~cs~ 192 (620)
T COG3914 189 QCSW 192 (620)
T ss_pred hccc
Confidence 3333
No 375
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.013 Score=53.62 Aligned_cols=106 Identities=10% Similarity=-0.041 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHHHHH
Q 043837 53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA---KDYASAISETGYLLKEDENNLEALLH 129 (409)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~ 129 (409)
+..+..+..+...+..+.+..|+..|.+ ++...|.....+.++|.++++. |+.-.|+..+..+++++|....+|+.
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~-a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSR-AIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHH-HhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 3444455566666667778889999988 8888899999999999998875 46778999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
|+.++..++++.+|+.+...+....|.+..
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 999999999999999999988888886654
No 376
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.48 E-value=0.73 Score=42.86 Aligned_cols=175 Identities=13% Similarity=0.025 Sum_probs=112.3
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcC---ChHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKD--------------YASAISETGYLLKEDEN-NLEALLHRGRAYYYLA---DHDVA 143 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~---~~~~A 143 (409)
++..-+.++++|+..+..+...++ .+++..+|++++...-. +...++.++..-...- .++..
T Consensus 271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence 444446667777776666665555 66777778777764322 2333344443322222 25666
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH-HHHHcC
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK-VLVKLG 222 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~-~~~~~~ 222 (409)
...+++++.+...+... +|..+-...... .-.+.|...|.++-+..-. ...++..-|. -|...+
T Consensus 351 ~~~~~~ll~~~~~~~tL--v~~~~mn~irR~---------eGlkaaR~iF~kaR~~~r~----~hhVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLTL--VYCQYMNFIRRA---------EGLKAARKIFKKAREDKRT----RHHVFVAAALMEYYCSK 415 (656)
T ss_pred HHHHHHHHhhhccCCce--ehhHHHHHHHHh---------hhHHHHHHHHHHHhhccCC----cchhhHHHHHHHHHhcC
Confidence 66777776654333331 333333333333 5567788888887765443 2223333332 356678
Q ss_pred ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 223 RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
+.+-|...|+-.++..++.+.........+..+++-..|...|++++..
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999999999999999988888888899999999999999999887
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.47 E-value=0.0056 Score=32.92 Aligned_cols=31 Identities=26% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDEN 122 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 122 (409)
++..+|.++...+++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555555556666666655555555543
No 378
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0085 Score=59.21 Aligned_cols=55 Identities=38% Similarity=0.604 Sum_probs=45.2
Q ss_pred hhhhhhhcccccC----CHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChh
Q 043837 295 KDWYKILGVSKTA----SISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDD 353 (409)
Q Consensus 295 ~~~~~~l~~~~~~----~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~ 353 (409)
.+.+++|.++... ....|++.|+++|.++||||+++-+ ++|..+++|||.|....
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGR----emFe~VnKAYE~L~~~t 1339 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGR----EMFERVNKAYELLSSET 1339 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHH----HHHHHHHHHHHHHHHHH
Confidence 4678998876432 4578999999999999999997765 48889999999998443
No 379
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.41 E-value=0.37 Score=48.99 Aligned_cols=129 Identities=22% Similarity=0.157 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 3 HYSEALDDLNTAIEADPTLS---EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++|+..|++.-..-|.-. ++.+..|..++.+ |...-....+++|+..|+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 543 (932)
T PRK13184 490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK--------------------------ASEQGDPRDFTQALSEFS 543 (932)
T ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH--------------------------HHhcCChHHHHHHHHHHH
Confidence 47788888888877777644 4555666554322 222211235677777776
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHccC
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL-----ADHDVAQRHFQKGLRLD 154 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~ 154 (409)
+ +...|..+--|...|.+|.+++++++-+++|.-+++..|..|..-...-.+-+++ .+...|....--++...
T Consensus 544 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (932)
T PRK13184 544 Y--LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIA 621 (932)
T ss_pred H--hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5 6667888889999999999999999999999999999998877433332222222 12345566666677777
Q ss_pred CCcHH
Q 043837 155 PEHSE 159 (409)
Q Consensus 155 p~~~~ 159 (409)
|....
T Consensus 622 ~~~~~ 626 (932)
T PRK13184 622 PEKIS 626 (932)
T ss_pred ccccc
Confidence 76554
No 380
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0043 Score=53.77 Aligned_cols=85 Identities=29% Similarity=0.329 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
....+.+++.+-++.+.+..|+.....+++.+++...+++.++..+..+.++++|++.++.+....|++..+...+....
T Consensus 274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 34567779999999999999999999999999999999999999999999999999999999999999999888887776
Q ss_pred HHHhh
Q 043837 287 KALKM 291 (409)
Q Consensus 287 ~~~~~ 291 (409)
...+.
T Consensus 354 ~~~~~ 358 (372)
T KOG0546|consen 354 QKKKQ 358 (372)
T ss_pred hHHHH
Confidence 65543
No 381
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.40 E-value=0.0062 Score=49.51 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 219 VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
.+.++.+.|.+.|.+++++.|++...|+++|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555666666666666666666666666666666666666666666666666654
No 382
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.34 E-value=0.13 Score=46.90 Aligned_cols=126 Identities=16% Similarity=0.044 Sum_probs=97.7
Q ss_pred HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837 64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 143 (409)
..+..|+.-.|-..+.. ++...|..+......+.+...+|+|+.|...+..+-..-..-..+...+-.....++++++|
T Consensus 298 k~~~~gd~~aas~~~~~-~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFA-ALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHH-HHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34556787777777766 78888999999999999999999999999888777666555556677777888899999999
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
...-...+.-.-++++ +...-+..-..+ +-++++.-++++.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~e---i~~iaa~sa~~l---------~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEE---VLTVAAGSADAL---------QLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChh---heeeecccHHHH---------hHHHHHHHHHHHHhccCCh
Confidence 9998888876666666 332223333344 8889999999999999885
No 383
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.26 E-value=0.59 Score=39.45 Aligned_cols=198 Identities=14% Similarity=0.052 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Q 043837 3 HYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYI 78 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 78 (409)
..++|+..|.+++++.|... .++-....+++.++++++-...+.+.+.-..++... +-.++++...
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr----------NySEKsIN~I 111 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR----------NYSEKSINSI 111 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc----------cccHHHHHHH
Confidence 46899999999999988754 467778889999999988777766665533322110 0111111111
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DENNLEAL----LHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
-. .+. ...+.+--.+.|+..++. +..+...| ..+|.+|+..++|.+-.+.+++.-.
T Consensus 112 lD-yiS-----------------tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 112 LD-YIS-----------------TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HH-HHh-----------------hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 11 000 111111112222222211 11222233 4688888888888776666655433
Q ss_pred cC---CCcH------HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--ccchHHHHHHHHHHHHHc
Q 043837 153 LD---PEHS------ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--TAHNVHLYLGLCKVLVKL 221 (409)
Q Consensus 153 ~~---p~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~la~~~~~~ 221 (409)
.. .... ....+|..-...|... ++-.+-...|++++.+...- |.....+..-=|..++..
T Consensus 174 SCq~edGedD~kKGtQLLEiYAlEIQmYT~q---------KnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlre 244 (440)
T KOG1464|consen 174 SCQTEDGEDDQKKGTQLLEIYALEIQMYTEQ---------KNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLRE 244 (440)
T ss_pred HhccccCchhhhccchhhhhHhhHhhhhhhh---------cccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccccc
Confidence 21 1111 1112222222333333 66666677888888765432 211122222335567788
Q ss_pred CChhHHHHHHHHHHhc
Q 043837 222 GRGKDALSSCTEALNI 237 (409)
Q Consensus 222 ~~~~~A~~~~~~al~~ 237 (409)
|+|++|-..|-+|.+.
T Consensus 245 g~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 245 GEFEKAHTDFFEAFKN 260 (440)
T ss_pred chHHHHHhHHHHHHhc
Confidence 8999998888888765
No 384
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.74 Score=43.15 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=101.2
Q ss_pred ccCHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc------------------
Q 043837 103 AKDYASAISETGYLLKE------------DENNLEALLHRGRAYYYLADHDVAQRHFQKGLR------------------ 152 (409)
Q Consensus 103 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------ 152 (409)
...|++|...|.-++.. .|-..+.+..++.++..+|+.+-|...+.++|-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34578888888877654 455677899999999999999988888877763
Q ss_pred ---cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC-CccchHHHHHHHHHHHHHcCChhHHH
Q 043837 153 ---LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN-HTAHNVHLYLGLCKVLVKLGRGKDAL 228 (409)
Q Consensus 153 ---~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 228 (409)
..|.|.. .|..+-.. ...+-++|-+..|.++.+-.+.++|. +|. -+.+.+=...++..+|+=-+
T Consensus 331 L~y~~~eNR~---FyL~l~r~------m~~l~~RGC~rTA~E~cKlllsLdp~eDPl---~~l~~ID~~ALrareYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQ---FYLALFRY------MQSLAQRGCWRTALEWCKLLLSLDPSEDPL---GILYLIDIYALRAREYQWII 398 (665)
T ss_pred CcccchhhHH---HHHHHHHH------HHHHHhcCChHHHHHHHHHHhhcCCcCCch---hHHHHHHHHHHHHHhHHHHH
Confidence 1233333 22222111 12223459999999999999999998 542 12222223334555666666
Q ss_pred HHHHHHH-----hcChhcHHHHHHHHHHHHhccC---HHHHHHHHHHHHhhCCC
Q 043837 229 SSCTEAL-----NINEELIEALVQRGEAKLLTED---WEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 229 ~~~~~al-----~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~ 274 (409)
..++..- ..-|+.+ .-..+|..|..... -..|...+.+|+...|.
T Consensus 399 ~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 6665542 2234322 22345555555554 56788999999999884
No 385
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.16 E-value=0.12 Score=41.49 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=81.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
...++...+..++..+... |+.++|++.|.++.+....... ....+.++..+.+..+++..+..++.++-
T Consensus 31 ~kesir~~~~~l~~~~~~~---------Gd~~~A~k~y~~~~~~~~~~~~-~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKI---------GDLEEALKAYSRARDYCTSPGH-KIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred chHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhcCCHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344556788888888888 9999999999998886654332 67788899999999999999999999887
Q ss_pred hcCh--hc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 236 NINE--EL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 236 ~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
.+-. .+ .......|..++..++|..|...|-.+..-.
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 6522 12 2344556778888999999999887665443
No 386
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.14 E-value=0.11 Score=39.56 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=64.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH
Q 043837 62 ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD 141 (409)
Q Consensus 62 a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 141 (409)
....+...+.+++..+++. +..+.|+.+.+-..-+.+++..|+|.+|+..++.+.+..+..+..--.++.|+..+++.+
T Consensus 17 ~~~aL~~~d~~D~e~lLdA-LrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDA-LRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHhcCCHHHHHHHHHH-HHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3334447788888888876 777889999999999999999999999999999998888887877778888888888754
No 387
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.11 E-value=0.18 Score=37.64 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=58.3
Q ss_pred CcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 88 ACSKAKLLKVKLLLAAK---DYASAISETGYLLK-EDEN-NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
-.....+++|.++.... +..+.+.+++..++ -+|. .-+..+.|+..++++++|+.++.+.+.+++..|++.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 34567788888887655 45678889999986 4454 3456789999999999999999999999999999987
No 388
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.06 E-value=0.011 Score=48.05 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=54.2
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 99 LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
.....++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456788899999999999999999999999999999999999999999999999998754
No 389
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.45 Score=45.08 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=83.4
Q ss_pred HHhhHHhcCCHHHHHHHHHHHHccCCCCcc--chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTA--HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL 253 (409)
Q Consensus 176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 253 (409)
.|...++..+|..+++.|...+..-|.+.. ..+....+++.||+.+.+.+.|++++++|-+.+|.++-.....-.+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 455666779999999999999997776432 135677899999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhhCC
Q 043837 254 LTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 254 ~~~~~~~A~~~~~~al~~~p 273 (409)
..++-++|+....+......
T Consensus 440 ~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HhcchHHHHHHHHHHHhhhc
Confidence 99999999999988776543
No 390
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.04 E-value=0.068 Score=47.69 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=73.9
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHccCCC--------Ccc------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALALDPN--------HTA------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~--------~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
..+...+.+++|..|.--|..+|++..+ .+. ....+...+..||+.+++.+.|+....+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 4455555567777777777777665322 111 12345567899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
+...+.+.|.|+..+.+|.+|...+--+.-
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887765543
No 391
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.04 E-value=0.96 Score=39.82 Aligned_cols=149 Identities=18% Similarity=0.120 Sum_probs=102.4
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcC-----
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA----AKDYASAISETGYLLKEDENN-LEALLHRGRAYYYLA----- 138 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~----- 138 (409)
.+..+|+..|.. ......+.+.+.+|.+|.. ..+..+|..+|.++.+..-.. ..+.+.++.+|..-.
T Consensus 91 ~~~~~A~~~~~~---~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRC---AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHH---HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 457778888864 3345677888999999987 559999999999999875433 344788888887752
Q ss_pred --ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH
Q 043837 139 --DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK 216 (409)
Q Consensus 139 --~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~ 216 (409)
+...|+..|.++-... +.. +...++.++..- .+ -..++.+|+.+|.++-+... ....+.++
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~---a~~~lg~~y~~G-~G----v~~d~~~A~~wy~~Aa~~g~------~~a~~~~~- 230 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPD---AQLLLGRMYEKG-LG----VPRDLKKAFRWYKKAAEQGD------GAACYNLG- 230 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHH---HHHHHHHHHHcC-CC----CCcCHHHHHHHHHHHHHCCC------HHHHHHHH-
Confidence 2337888888887765 333 667777665431 11 12689999999999988765 23667777
Q ss_pred HHHHcC---------------ChhHHHHHHHHHHhc
Q 043837 217 VLVKLG---------------RGKDALSSCTEALNI 237 (409)
Q Consensus 217 ~~~~~~---------------~~~~A~~~~~~al~~ 237 (409)
++...| +...|..++..+...
T Consensus 231 ~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 231 LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 666555 445555555555444
No 392
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=1.2 Score=40.11 Aligned_cols=178 Identities=13% Similarity=0.081 Sum_probs=122.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHhhCCCCHHH
Q 043837 59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA------------KDYASAISETGYLLKEDENNLEA 126 (409)
Q Consensus 59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~ 126 (409)
+......-..+.|+.-.-.+...++..+|....+|..+=.++... .-.++-+.+...+++.+|++..+
T Consensus 32 ~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~a 111 (421)
T KOG0529|consen 32 FSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGA 111 (421)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHH
Confidence 333344445566655444444448888998887777665544322 23566778889999999999999
Q ss_pred HHHHHHHHHhcCC--hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837 127 LLHRGRAYYYLAD--HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT 204 (409)
Q Consensus 127 ~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 204 (409)
|+.+..++.+... +..-+..++++++.||.+.. .|.....+....... .....+-+.+.++++.-++.
T Consensus 112 W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh---~W~YRRfV~~~~~~~-----~~~~~~El~ftt~~I~~nfS-- 181 (421)
T KOG0529|consen 112 WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH---AWHYRRFVVEQAERS-----RNLEKEELEFTTKLINDNFS-- 181 (421)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc---chHHHHHHHHHHhcc-----cccchhHHHHHHHHHhccch--
Confidence 9999999987764 68889999999999999987 554444444333111 13456678888999988888
Q ss_pred cchHHHHHHHHHHHHH------cCC------hhHHHHHHHHHHhcChhcHHHHHHH
Q 043837 205 AHNVHLYLGLCKVLVK------LGR------GKDALSSCTEALNINEELIEALVQR 248 (409)
Q Consensus 205 ~~~~~~~~~la~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~l 248 (409)
+..+|.++..++.. .|+ ...-+..-..|+-.+|++..+|+..
T Consensus 182 --NYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 182 --NYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred --hhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 77889888877662 231 1233445556666789988887663
No 393
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.93 E-value=1.3 Score=40.43 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=93.0
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHccCCCcHHHHHHHHH-HHHHHHHHHHHhhHHhcCCHHHHHHH--HHHHHccCCCCc
Q 043837 129 HRGRAYYYLAD-HDVAQRHFQKGLRLDPEHSELKKAYFA-LKNLLKKTKSAEDNVSKGKLRVAVED--FKAALALDPNHT 204 (409)
Q Consensus 129 ~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~A~~~--~~~al~~~~~~~ 204 (409)
.-|.-++..|. -++|+..++.++...|.+..+...... +...|... +.......-+.. +-.-+.+.|-..
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qa------Ls~~~~~rLlkLe~fi~e~gl~~i~i 457 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQA------LSMHAIPRLLKLEDFITEVGLTPITI 457 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHhcCCCcccc
Confidence 34455566666 788899999998888877763322211 12222111 111111111111 111122344322
Q ss_pred cchHHHHHHH--HHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC----cHHH
Q 043837 205 AHNVHLYLGL--CKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ----DMNI 278 (409)
Q Consensus 205 ~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~ 278 (409)
. +.+.-.-+ |..++..|+|.++.-+..-..++.| ++.++..+|.|+....+|++|..++.. +.|+ +..+
T Consensus 458 ~-e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskv 532 (549)
T PF07079_consen 458 S-EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKV 532 (549)
T ss_pred c-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHH
Confidence 2 34444444 4457789999999999999999999 899999999999999999999999864 3343 2345
Q ss_pred HHHHHHHHHHHh
Q 043837 279 REALMRAEKALK 290 (409)
Q Consensus 279 ~~~l~~~~~~~~ 290 (409)
...+..|++.+.
T Consensus 533 qKAl~lCqKh~~ 544 (549)
T PF07079_consen 533 QKALALCQKHLP 544 (549)
T ss_pred HHHHHHHHHhhh
Confidence 566666665543
No 394
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.86 E-value=1.9 Score=41.64 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=72.8
Q ss_pred HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HH---HHHHHHHHHH
Q 043837 65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LE---ALLHRGRAYY 135 (409)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~---~~~~l~~~~~ 135 (409)
+...-..++|+++.+. +| ++..|..+|...+..-.++.|...|-++-.. |.- .. --...+.+-.
T Consensus 673 Lve~vgledA~qfiEd-----nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~ 745 (1189)
T KOG2041|consen 673 LVEAVGLEDAIQFIED-----NP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA 745 (1189)
T ss_pred HHHHhchHHHHHHHhc-----CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh
Confidence 3444445666666654 44 5788888998888887888887777665321 110 00 0123444555
Q ss_pred hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC 215 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la 215 (409)
.-|++++|.+.|-.+=. .+. -.. +...+ |+|-.....++..-.-+.+ . ....++.++|
T Consensus 746 ~~g~feeaek~yld~dr---rDL-----Aie---lr~kl---------gDwfrV~qL~r~g~~d~dD-~-~~e~A~r~ig 803 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADR---RDL-----AIE---LRKKL---------GDWFRVYQLIRNGGSDDDD-E-GKEDAFRNIG 803 (1189)
T ss_pred hhcchhHhhhhhhccch---hhh-----hHH---HHHhh---------hhHHHHHHHHHccCCCcch-H-HHHHHHHHHH
Confidence 55777777776644311 111 000 11111 4444444444322111111 1 1345666666
Q ss_pred HHHHHcCChhHHHHHHHHH
Q 043837 216 KVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~a 234 (409)
..+..+..|++|.++|...
T Consensus 804 ~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666666666666543
No 395
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.84 E-value=0.33 Score=39.20 Aligned_cols=74 Identities=16% Similarity=0.049 Sum_probs=53.8
Q ss_pred CCCchHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcCChH
Q 043837 68 SGEYTKPLEYIDKVVLVFSP--ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN----NLEALLHRGRAYYYLADHD 141 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~ 141 (409)
+-.-+.|...|-+ ++..| +++...+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.++..+++++
T Consensus 119 r~~d~~A~~~fL~--~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 119 RFGDQEALRRFLQ--LEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred ccCcHHHHHHHHH--HcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3345667776654 33333 46777888887776 56788899999999887544 4788888999999998888
Q ss_pred HHH
Q 043837 142 VAQ 144 (409)
Q Consensus 142 ~A~ 144 (409)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 396
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.84 E-value=2.1 Score=42.15 Aligned_cols=58 Identities=14% Similarity=-0.130 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcC---h------hcHHHHHHHHHHHHhccCHHHHHHHHH
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNIN---E------ELIEALVQRGEAKLLTEDWEGAVEDLK 266 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p------~~~~~~~~la~~~~~~~~~~~A~~~~~ 266 (409)
.+....+.+.+-.+++..|....+.+.... | -.+..++..|..+...|+.+.|...|.
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344567777888999999998888777542 2 247788999999999999999999998
No 397
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.73 E-value=0.31 Score=49.99 Aligned_cols=171 Identities=17% Similarity=0.095 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHccCHHHHHH------HHHHH-HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-----CCcH
Q 043837 91 KAKLLKVKLLLAAKDYASAIS------ETGYL-LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD-----PEHS 158 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 158 (409)
.-....+......+.+.+|.+ .+... -.+.|.....+..++.++..++++++|+..-.++.-+. -++.
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 334555666677778887777 44422 23467888899999999999999999999988876542 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-----CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE 233 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 233 (409)
.....+.+++...... ++...|+..+.++..+ .|++|. .+....++..++...++++.|+.+.+.
T Consensus 1013 ~t~~~y~nlal~~f~~---------~~~~~al~~~~ra~~l~~Ls~ge~hP~-~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAV---------KNLSGALKSLNRALKLKLLSSGEDHPP-TALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred HHHHHhhHHHHHHHhc---------cCccchhhhHHHHHHhhccccCCCCCc-hhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 3334566666554444 7788888888877663 344554 667778999999999999999999999
Q ss_pred HHhcCh--------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 234 ALNINE--------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 234 al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
|+..+. .....+..+++++...+++..|+...+....+
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 998642 23455666777777777777777666655543
No 398
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.11 Score=48.90 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPA------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHR 130 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 130 (409)
..++.|...++..+|..+++.|.. .+..-|. .+.....++.||+.+.+.+.|.+++++|-+.+|.++-.....
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~-Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKL-SLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH-HHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 457788899999999999999988 4444343 356778889999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHcc
Q 043837 131 GRAYYYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~ 153 (409)
..+....+.-++|+.+..+....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 89999999999999988877653
No 399
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=0.33 Score=45.97 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=100.6
Q ss_pred HHHHHHHHHcCChHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-hhCCCcHHHHHHHHHH
Q 043837 26 FHRGSVLRQLCRVKARNSVAEKELS-----QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL-VFSPACSKAKLLKVKL 99 (409)
Q Consensus 26 ~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~p~~~~~~~~~a~~ 99 (409)
..+|.++.-.|++.+|...+.+.=. ........+..+.+++..|.-++-..+..+.+. ..+-+.+ ...|..
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEm 712 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEM 712 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHH
Confidence 4567777778888888777654311 223344557777777777777766666655221 0111111 234667
Q ss_pred HHHccCHHHHHHHHHH----------HHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837 100 LLAAKDYASAISETGY----------LLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN 169 (409)
Q Consensus 100 ~~~~~~~~~A~~~~~~----------al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 169 (409)
+...|+.++|+...-. +-+++....+.+...+..+..+..+.-|.+.|.+. +.
T Consensus 713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~-----------------gD 775 (1081)
T KOG1538|consen 713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM-----------------GD 775 (1081)
T ss_pred hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh-----------------cc
Confidence 7788888888765321 11222333334444444444444444444444432 21
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 234 (409)
.- ......++.++|.+|...-++--+.-|+ +|+-.|+.+.+..++++|.+.|-+|
T Consensus 776 ~k---siVqlHve~~~W~eAFalAe~hPe~~~d-------Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 776 LK---SLVQLHVETQRWDEAFALAEKHPEFKDD-------VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HH---HHhhheeecccchHhHhhhhhCcccccc-------ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 11 1122234448888888877776555555 7777777777777777777776655
No 400
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.11 Score=43.93 Aligned_cols=73 Identities=22% Similarity=0.142 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 279 (409)
......++=.++...++++.|..+.++.+.++|.++.-+..+|.+|.++|.+.-|++.++..++..|+++.+.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 4456667777889999999999999999999999999999999999999999999999999999999987643
No 401
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.60 E-value=0.31 Score=37.16 Aligned_cols=84 Identities=11% Similarity=-0.026 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
..+..+..+-....+.+++...+...--+.|+.++....-+.+++..|+|.+|+..++...+-.+..+-....+..|...
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34445555555577777777777776667788777777778888888888888888877777777777777777777666
Q ss_pred Hhhc
Q 043837 289 LKMS 292 (409)
Q Consensus 289 ~~~~ 292 (409)
+...
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 5543
No 402
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.58 E-value=0.015 Score=56.70 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=12.8
Q ss_pred ChhhhhhhhcCCCcccc
Q 043837 351 DDDKRARYDRGEDIEET 367 (409)
Q Consensus 351 d~~~~~~~~~~~~~~~~ 367 (409)
-|.|+.+||+|..-+..
T Consensus 1164 ~PPKmaryDnG~~~n~S 1180 (1282)
T KOG0921|consen 1164 GPPKMARYDNGPSNNNS 1180 (1282)
T ss_pred CCcccccccCCCccCcc
Confidence 68899999998655443
No 403
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=1.4 Score=37.64 Aligned_cols=267 Identities=14% Similarity=0.155 Sum_probs=147.4
Q ss_pred CChHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHhHHHHH---HHHHHHHHHHHHHHHHHHH----
Q 043837 2 KHYSEALDDLNTAIEADP--------TLSEAYFHRGSVLRQLCRVKARNSVAEK---ELSQLLQAQSTFDSALKLY---- 66 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~---~l~~~~~~~~~~~~a~~~~---- 66 (409)
+++++|+..|.+.+.... +...+...++.+|...|++..-...... .......+.. ......++
T Consensus 17 ~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~-~KiirtLiekf~ 95 (421)
T COG5159 17 NDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKI-TKIIRTLIEKFP 95 (421)
T ss_pred hhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhH-HHHHHHHHHhcC
Confidence 478999999999987621 1235678899999999997653222211 1111111000 00011111
Q ss_pred -hCCCchHHHHHHHHHH---HhhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 043837 67 -DSGEYTKPLEYIDKVV---LVFSPA--CSKAKLLKVKLLLAAKDYASAISETGYLLKE------DENNLEALLHRGRAY 134 (409)
Q Consensus 67 -~~~~~~~A~~~~~~~~---~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 134 (409)
....++.-+..++..+ ...... ....-..++..++..|+|.+|+......+.- .|+-..++..-+.+|
T Consensus 96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvy 175 (421)
T COG5159 96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVY 175 (421)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHH
Confidence 1233444444443322 222111 1234456788889999999999888777642 244566788888999
Q ss_pred HhcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHH-HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837 135 YYLADHDVAQRHFQKGLRL-----DPEHSELKKAYFAL-KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV 208 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 208 (409)
....+..++...+..|-.. .|.... +-..+ .-++. .+..+|..|-.+|-++++-...-.. ..
T Consensus 176 h~irnv~KskaSLTaArt~Ans~YCPpqlq---a~lDL~sGIlh--------cdd~dyktA~SYF~Ea~Egft~l~~-d~ 243 (421)
T COG5159 176 HEIRNVSKSKASLTAARTLANSAYCPPQLQ---AQLDLLSGILH--------CDDRDYKTASSYFIEALEGFTLLKM-DV 243 (421)
T ss_pred HHHHhhhhhhhHHHHHHHHhhccCCCHHHH---HHHHHhcccee--------eccccchhHHHHHHHHHhccccccc-hH
Confidence 9999988888877766542 333322 22222 22221 1127888899998888874432111 12
Q ss_pred HH-----HHHHHHHHHHcCChhHHHHHH--HHHHh-cChhcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhhCCCcHHH
Q 043837 209 HL-----YLGLCKVLVKLGRGKDALSSC--TEALN-INEELIEALVQRGEAKLL--TEDWEGAVEDLKSAAQQSPQDMNI 278 (409)
Q Consensus 209 ~~-----~~~la~~~~~~~~~~~A~~~~--~~al~-~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~ 278 (409)
.+ |..+..+.. +..++....+ ...++ .+....++....+.++-. +.+|..|+..|+.-+..+| -+
T Consensus 244 kAc~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~---~i 318 (421)
T COG5159 244 KACVSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS---FI 318 (421)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH---HH
Confidence 22 223333333 3333332222 23333 345567777777777743 5688888888887766554 44
Q ss_pred HHHHHHHH
Q 043837 279 REALMRAE 286 (409)
Q Consensus 279 ~~~l~~~~ 286 (409)
+..+...+
T Consensus 319 RsHl~~LY 326 (421)
T COG5159 319 RSHLQYLY 326 (421)
T ss_pred HHHHHHHH
Confidence 44444443
No 404
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.48 E-value=0.056 Score=46.23 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=77.3
Q ss_pred HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH-RGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
...-|+++..|...+......+-|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.+++.++|+++.++
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34458899999999999999999999999999999999999999975 66678888999999999999999999999966
Q ss_pred HHHHHHHHHHH
Q 043837 162 KAYFALKNLLK 172 (409)
Q Consensus 162 ~~~~~l~~~~~ 172 (409)
..++.+-..+.
T Consensus 180 ~eyfr~El~yi 190 (435)
T COG5191 180 IEYFRMELMYI 190 (435)
T ss_pred HHHHHHHHHHH
Confidence 66666554443
No 405
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.48 E-value=0.58 Score=43.62 Aligned_cols=101 Identities=11% Similarity=-0.054 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC
Q 043837 26 FHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD 105 (409)
Q Consensus 26 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~ 105 (409)
...+..+.+.|-.+.|+... .+....|+.|+. .|+.+.|.+...+ .+++..|..+|...+..|+
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~-------~D~~~rFeLAl~---lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFV-------TDPDHRFELALQ---LGNLDIALEIAKE------LDDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-------S-HHHHHHHHHH---CT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHCCCHHHHHhhc-------CChHHHhHHHHh---cCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCC
Confidence 33444455555544443332 223333444433 3666666655533 2355667777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
++-|.++|+++-. +-.+..+|...|+.+.-.+..+.|
T Consensus 363 ~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 363 IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7777766666432 234455555566554444443333
No 406
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.46 E-value=0.14 Score=49.54 Aligned_cols=127 Identities=19% Similarity=0.230 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcChh
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK--LGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~ 240 (409)
+...+...+....+++..+...++..|.--|..++.+-|.+....+....+.+.|+.. .++|..++..+.-++...|.
T Consensus 46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~ 125 (748)
T KOG4151|consen 46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR 125 (748)
T ss_pred hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch
Confidence 5666677777777888888889999999999999999985444356667777777765 56899999999999999999
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
...++..++.+|...++++-|++.+.-.....|.+........+.+..+
T Consensus 126 i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 126 ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999998888889999866655444444444
No 407
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.45 E-value=0.37 Score=48.94 Aligned_cols=146 Identities=19% Similarity=0.110 Sum_probs=104.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV 208 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 208 (409)
..-.++...+.|+.|+..|++.-...|...+-..+.+.+|...... +.+.-....+++|+..|++... .|. -+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~----~~ 552 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK--ASEQGDPRDFTQALSEFSYLHG-GVG----AP 552 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH--HHhcCChHHHHHHHHHHHHhcC-CCC----Cc
Confidence 3446777888999999999999999999888777888888876543 3333333468888888877544 333 34
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT-----EDWEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
.-|...|.+|..++++++-++++.-|++..|++|..-...-.+-.++ .+-..|....--++...|........
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREE 630 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHH
Confidence 46888999999999999999999999999888876544333322222 23355667777778888876554443
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.41 E-value=0.071 Score=37.74 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=38.5
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcc-----chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837 181 VSKGKLRVAVEDFKAALALDPNHTA-----HNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238 (409)
Q Consensus 181 ~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 238 (409)
+..++|..|++.+.+.++....... ....+..++|.++...|++++|+..+++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4458899998888888775543221 123456667777777777777777777777653
No 409
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.39 E-value=0.16 Score=33.89 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=41.2
Q ss_pred HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
++.+..++.+.+.++|+..++++++..++.+. ...++-.+..+|...|+|.+++++...=+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555667778888888888887776443 455555666777777777777766554443
No 410
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=1.1 Score=35.32 Aligned_cols=125 Identities=19% Similarity=0.031 Sum_probs=68.3
Q ss_pred hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC 215 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la 215 (409)
..+..++|+..|...-+..-.+.. ..+....+.+.... |+...|+..|.++-...|......-.+...-+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~k---------gdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQK---------GDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhc---------ccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 345566666666654443322221 01233333333333 77777777777766655432221233445556
Q ss_pred HHHHHcCChhHHHHHHHHHH-hcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 216 KVLVKLGRGKDALSSCTEAL-NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
.++...|-|++.....+-.- .-+|--..+.-.||.+-++.|++..|.+.|.....
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666777766554443321 22444455666677777777777777777776665
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=1.1 Score=42.06 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=93.5
Q ss_pred hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----C----------------CCCHH---HHHHHHHHHHhcCC
Q 043837 84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-----D----------------ENNLE---ALLHRGRAYYYLAD 139 (409)
Q Consensus 84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~----------------p~~~~---~~~~l~~~~~~~~~ 139 (409)
...|.+...++.++.+...+|+.+-|.....++|=. . |.|-. +++..-..+...|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 346788999999999999999998888887777631 1 22222 22333445567789
Q ss_pred hHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH-----HccCCCCccchHHHHHH
Q 043837 140 HDVAQRHFQKGLRLDPE-HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA-----LALDPNHTAHNVHLYLG 213 (409)
Q Consensus 140 ~~~A~~~~~~al~~~p~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~ 213 (409)
+..|.++++-.++++|. ++- ....+..++... ..+|+=-+..++.. +...|+ ...-..
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl---~~l~~ID~~ALr--------areYqwiI~~~~~~e~~n~l~~~PN-----~~yS~A 421 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPL---GILYLIDIYALR--------AREYQWIIELSNEPENMNKLSQLPN-----FGYSLA 421 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCch---hHHHHHHHHHHH--------HHhHHHHHHHHHHHHhhccHhhcCC-----chHHHH
Confidence 99999999999999998 665 333333333222 15555556555544 334454 224445
Q ss_pred HHHHHHHcCC---hhHHHHHHHHHHhcChh
Q 043837 214 LCKVLVKLGR---GKDALSSCTEALNINEE 240 (409)
Q Consensus 214 la~~~~~~~~---~~~A~~~~~~al~~~p~ 240 (409)
+|..|+.... -+.|...+.+|+...|.
T Consensus 422 lA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 422 LARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 5666666555 56788999999998884
No 412
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.25 E-value=6.3 Score=43.76 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN- 238 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 238 (409)
+...|...+.+.+.. |+++.|...+-.|.+..+ +.++...|..+...|+-..|+..+++.++.+
T Consensus 1669 ~ge~wLqsAriaR~a---------G~~q~A~nall~A~e~r~------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLA---------GHLQRAQNALLNAKESRL------PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hHHHHHHHHHHHHhc---------ccHHHHHHHHHhhhhccc------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 334566666555555 888888888887777653 2378888888888888888988888888652
Q ss_pred hh----------c------HHHHHHHHHHHHhccCH--HHHHHHHHHHHhhCCCc
Q 043837 239 EE----------L------IEALVQRGEAKLLTEDW--EGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 239 p~----------~------~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~ 275 (409)
|+ . ..+....+.-..+.+++ ++-++.|+.+.++.|..
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 22 1 12233344444444543 34456778888887754
No 413
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.073 Score=37.34 Aligned_cols=53 Identities=28% Similarity=0.387 Sum_probs=43.3
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGD 351 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d 351 (409)
+.+.-.+|+|++..+.+.|+++.|++....|||+.-.-- ....|++|++.|..
T Consensus 55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPY-----lAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPY-----LASKINEAKDLLEG 107 (112)
T ss_pred hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHH-----HHHHHHHHHHHHhc
Confidence 456678999999999999999999999999999864422 33458999988864
No 414
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.25 Score=41.93 Aligned_cols=75 Identities=17% Similarity=0.081 Sum_probs=64.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l 167 (409)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+++-+.-|++.+...+...|+.+.+..+...+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 334455778889999999999999999999999999999999999999999999999999999998744333333
No 415
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.99 E-value=0.058 Score=31.20 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 210 LYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 210 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
++.++|.+|...|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 5556666666666666666666666543
No 416
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.97 E-value=0.064 Score=30.99 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
..++.++|.+|..+|++++|..++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999998763
No 417
>PRK12798 chemotaxis protein; Reviewed
Probab=94.81 E-value=3.1 Score=37.84 Aligned_cols=214 Identities=21% Similarity=0.181 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCCCCH--H-HHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVK-LLLAAKDYASAISETGYLLKEDENNL--E-ALLH 129 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~--~-~~~~ 129 (409)
........+...|-.|+-.++.+.+..+....-|...-.++.+.. ..+...+..+|+..|+.+--..|... + ++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 345556677777888999999988876433344444445555544 34456788999999999988888743 2 3444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-CCCCccchH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-DPNHTAHNV 208 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~ 208 (409)
--.+....|+.+++..+-.+-+.....++.....+..+....... .+-. -...+...+.. +|.. ..
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~---------~d~~-~~~~l~~~ls~~d~~~---q~ 257 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRL---------DDEI-RDARLVEILSFMDPER---QR 257 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc---------cccc-cHHHHHHHHHhcCchh---HH
Confidence 444557889999888888888777777665444555555554443 2111 11224444443 4432 56
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCh----hcHHHHHHHHHHHHhccCHHHHHHHHHHHH--hhCCCcHHHHH
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINE----ELIEALVQRGEAKLLTEDWEGAVEDLKSAA--QQSPQDMNIRE 280 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~ 280 (409)
.+|..++..-.-.|+.+-|...-.+++.+.. +...+.+..+.+..-..++++|++.+...- ++.|.|..+.+
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~ 335 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLE 335 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHH
Confidence 6888999999999999999999999988743 345566666666677777888877775442 23444444433
No 418
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=2 Score=38.71 Aligned_cols=162 Identities=19% Similarity=0.121 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 043837 106 YASAISETGYLLKEDENNLEALLHRGRAYYY------------LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK 173 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~ 173 (409)
..++++.-.+.+..+|+...+|...=.++.. +.-.++-+.+...++..+|+... +|+....++..
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~---aW~hR~w~L~~ 121 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG---AWHHRKWVLQK 121 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH---HHHHHHHHHHh
Confidence 3567788888888899887777544333322 12356667888899999999888 88888887765
Q ss_pred HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC----ChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 174 TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG----RGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 174 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
.. .-++..-+...+++++.+|. +..+|..+=.+..... ...+=+.++.++|.-++.+..+|..+.
T Consensus 122 ~p-------~~~~~~EL~lcek~L~~D~R----Nfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs 190 (421)
T KOG0529|consen 122 NP-------HSDWNTELQLCEKALKQDPR----NFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRS 190 (421)
T ss_pred CC-------CchHHHHHHHHHHHHhcCcc----cccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHH
Confidence 41 13578889999999999998 5556665544444332 356778899999999999999999988
Q ss_pred HHHHh------ccC------HHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 250 EAKLL------TED------WEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 250 ~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
.++.. .|+ ...-++.-..|+-.+|+|..++..
T Consensus 191 ~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 191 LLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 87762 231 234455666777788988876654
No 419
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.75 E-value=0.08 Score=45.33 Aligned_cols=88 Identities=9% Similarity=0.006 Sum_probs=72.6
Q ss_pred HHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHH-HHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 195 AALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQ-RGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 195 ~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
++....|+ .+..|...+....+.+-+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...+.+++.++|
T Consensus 98 R~tnkff~----D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 98 RSTNKFFN----DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred hhhhcCCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 33344455 45578887777788889999999999999999999999987 56677888999999999999999999
Q ss_pred CcHHHHHHHHHHH
Q 043837 274 QDMNIREALMRAE 286 (409)
Q Consensus 274 ~~~~~~~~l~~~~ 286 (409)
+++.+|...-+.+
T Consensus 174 ~~p~iw~eyfr~E 186 (435)
T COG5191 174 RSPRIWIEYFRME 186 (435)
T ss_pred CCchHHHHHHHHH
Confidence 9999887655544
No 420
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.69 E-value=0.19 Score=45.03 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
+-..+..||+.+++.+-|+....+.|.++|.....+...|.|+..+.+|.+|...+--+.
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999999999999999999999999987665543
No 421
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.57 E-value=5.2 Score=39.44 Aligned_cols=237 Identities=14% Similarity=0.114 Sum_probs=128.0
Q ss_pred HHHHHHHHHHcCChHHHhHHHHHHHHHHHHHH---------------------------HHHHHHHHHHhCCCchHHHHH
Q 043837 25 YFHRGSVLRQLCRVKARNSVAEKELSQLLQAQ---------------------------STFDSALKLYDSGEYTKPLEY 77 (409)
Q Consensus 25 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------------------~~~~~a~~~~~~~~~~~A~~~ 77 (409)
|+.-+.+....+..+.|...+.+.+....... ..+..+...+-.+++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 34445566666666666555555554332222 223455556677999888888
Q ss_pred HHHHHHhh---CC------CcHHHHHHHHHHHHHccCHHHHHHHHH--------HHHhhCCCCHH---HHHHHHHHHHhc
Q 043837 78 IDKVVLVF---SP------ACSKAKLLKVKLLLAAKDYASAISETG--------YLLKEDENNLE---ALLHRGRAYYYL 137 (409)
Q Consensus 78 ~~~~~~~~---~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~--------~al~~~p~~~~---~~~~l~~~~~~~ 137 (409)
... +... .| ..+.+++..|..+...|+.+.|+..|. .+....+.+.- +..++..++...
T Consensus 384 l~~-~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 384 LEF-MRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred HHH-HHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhh
Confidence 876 3332 12 247788899999999999999999998 33333333221 334566666655
Q ss_pred CChHHHHHHHHHHHc-cCCC-----cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-C--CCccchH
Q 043837 138 ADHDVAQRHFQKGLR-LDPE-----HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-P--NHTAHNV 208 (409)
Q Consensus 138 ~~~~~A~~~~~~al~-~~p~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~--~~~~~~~ 208 (409)
+.-......+..+++ +.|. +.....++..+-.++ ..+..-...++...+.++++.. . ++.....
T Consensus 463 ~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~ 535 (608)
T PF10345_consen 463 SSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATY-------NTFEPFSSNEAKRHLQEALKMANNKLGNSQLLA 535 (608)
T ss_pred cccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHH-------hhCCccccHHHHHHHHHHHHHHHHhhccchHHH
Confidence 543332212233332 2221 112111222221111 1111123336666666666544 1 1111134
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc---HH-HH-----HHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEEL---IE-AL-----VQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~-~~-----~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
.++..++..++ .++..+.......+....... .. .| -.++..+...|+.++|.....+.-.
T Consensus 536 ~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 536 ILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 45556666666 777777666666666543322 32 33 2355567888999998887776544
No 422
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.55 E-value=0.068 Score=30.25 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
+++..+|.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888775
No 423
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.36 E-value=4.4 Score=37.76 Aligned_cols=161 Identities=15% Similarity=0.012 Sum_probs=99.5
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837 76 EYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155 (409)
Q Consensus 76 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 155 (409)
.++.+ ++... .+-.+++.++.||... ..++-...+++.++.+-++...-..++..|.. .+...+..+|.+++...-
T Consensus 87 h~c~~-~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 87 HLCTR-VLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHH-HHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence 34444 44443 4567888999999988 56788889999999988888777788887777 888899999999886432
Q ss_pred C---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHH-HHHHHHHHHHHcCChhHHHHHH
Q 043837 156 E---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVH-LYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 156 ~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~ 231 (409)
. +..+...|..+-.... .+.+.-+....+.-...... ... ++..+-.-|....++.+|+..+
T Consensus 163 ~~~q~~~i~evWeKL~~~i~-----------dD~D~fl~l~~kiqt~lg~~---~~~Vl~qdv~~~Ys~~eN~~eai~Il 228 (711)
T COG1747 163 PRRQNAAIKEVWEKLPELIG-----------DDKDFFLRLQKKIQTKLGEG---RGSVLMQDVYKKYSENENWTEAIRIL 228 (711)
T ss_pred chhhhhhHHHHHHHHHHhcc-----------ccHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHhccccCHHHHHHHH
Confidence 2 2223334444332211 23333333333322222211 122 2233334455667888888888
Q ss_pred HHHHhcChhcHHHHHHHHHHHHh
Q 043837 232 TEALNINEELIEALVQRGEAKLL 254 (409)
Q Consensus 232 ~~al~~~p~~~~~~~~la~~~~~ 254 (409)
.-.++.+..+..+...+..-+..
T Consensus 229 k~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 229 KHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHhhhcchhhhHHHHHHHHHHH
Confidence 88888887776666655554443
No 424
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.36 E-value=0.65 Score=31.09 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 128 LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 128 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
...|.-++..++.++|+..++++++..++......++-.+..++... |+|.+++.+-..-+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~---------Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEW---------GKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 34444455666667777777777776666666545555555555555 666666665544443
No 425
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.28 E-value=2.9 Score=35.37 Aligned_cols=171 Identities=16% Similarity=0.070 Sum_probs=84.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCCc--HHHHHHH-HHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDENN-LEALLHRGRAYYY-LADHDVAQRHFQKGLRLDPEH--SELKKAY-FAL 167 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~--~~~~~~~-~~l 167 (409)
+..+|.+..+.++|++.+.+.++++..+|.- .+-...++.+|-. .+..-.+...+.......... ....... ...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 5678888899999999999999999987763 3445555555532 233344444444433322211 1100000 000
Q ss_pred HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-----C-----ChhHHHHHHHHHHhc
Q 043837 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-----G-----RGKDALSSCTEALNI 237 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-----~-----~~~~A~~~~~~al~~ 237 (409)
..+...+. .--.+.+..++..+--...++...+..+-..|..|... + -.+.|...|++|+.+
T Consensus 84 ~kie~EL~--------~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 155 (236)
T PF00244_consen 84 KKIEDELI--------DICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEI 155 (236)
T ss_dssp HHHHHHHH--------HHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHH
Confidence 11111000 11223334444333222222221233333445544322 1 136778888888754
Q ss_pred -----ChhcH---HHHHHHHHHH-HhccCHHHHHHHHHHHHhh
Q 043837 238 -----NEELI---EALVQRGEAK-LLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 238 -----~p~~~---~~~~~la~~~-~~~~~~~~A~~~~~~al~~ 271 (409)
.|.+| ....+.+..| ..+++.++|+...++++..
T Consensus 156 a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 156 AKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 45554 3334445444 5589999999988887653
No 426
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=3.4 Score=37.25 Aligned_cols=134 Identities=18% Similarity=0.095 Sum_probs=89.2
Q ss_pred HHhcCChHHHHHHHHHHHcc-CCCc-----HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC--CCcc
Q 043837 134 YYYLADHDVAQRHFQKGLRL-DPEH-----SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP--NHTA 205 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~ 205 (409)
++.++++.+|...-+..+.. .-.+ .-....|+.+..++... ++...-...+...+.... ++..
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~---------~~l~~~rs~l~~~lrtAtLrhd~e 206 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELE---------GRLADIRSFLHALLRTATLRHDEE 206 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhh---------cchHHHHHHHHHHHHHhhhcCcch
Confidence 34457788888776665542 1111 11234566666666655 666665556655554321 1111
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHh----cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837 206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALN----INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 276 (409)
..+.+.+.+-..|+..+.|+.|-....++.- .+...+...+.+|.+..-+.+|..|.+++-.|+...|++.
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 1455666777888889999999888877652 1224567778899999999999999999999999999853
No 427
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.19 E-value=3.1 Score=35.31 Aligned_cols=212 Identities=17% Similarity=0.106 Sum_probs=110.0
Q ss_pred CCchHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-----CCHH-HHHHHHHHHHhcC
Q 043837 69 GEYTKPLEYIDKVVLVFSPACS----KAKLLKVKLLLAAKDYASAISETGYLLKEDE-----NNLE-ALLHRGRAYYYLA 138 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~-~~~~l~~~~~~~~ 138 (409)
.+.++|+..|.+ ++++.+... .++-.+..+.+.+++|.+-++.|.+.+..-. +..+ ....+-..-....
T Consensus 41 ~~p~~Al~sF~k-VlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 41 DEPKEALSSFQK-VLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred cCHHHHHHHHHH-HHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 466777777777 666665542 3455566677778888777777777664211 1111 1111111111112
Q ss_pred ChHHHHHHHHHHHc---cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--------ccch
Q 043837 139 DHDVAQRHFQKGLR---LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--------TAHN 207 (409)
Q Consensus 139 ~~~~A~~~~~~al~---~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~ 207 (409)
+.+--...|+..+. -..+..-+.+.-..++.++... +.|.+-...+.+.-..+... ....
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~---------~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL 190 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDR---------GEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL 190 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeH---------HHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence 22222222332222 1111111111222334444333 66666555555544322211 0113
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH--HHH----HHHHHHHhccCHHHHHHHHHHHHhhCC-----CcH
Q 043837 208 VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE--ALV----QRGEAKLLTEDWEGAVEDLKSAAQQSP-----QDM 276 (409)
Q Consensus 208 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~----~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~ 276 (409)
.++|..--..|..+++-.+-...|++++.+.+.-|. +.- -=|..+...|+|++|...|-+|++... ...
T Consensus 191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt 270 (440)
T KOG1464|consen 191 LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT 270 (440)
T ss_pred hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence 455666667788888888888899999887543322 221 124567888999999999989987643 333
Q ss_pred HHHHHHHHHHHHHh
Q 043837 277 NIREALMRAEKALK 290 (409)
Q Consensus 277 ~~~~~l~~~~~~~~ 290 (409)
.+...+..+...++
T Consensus 271 tCLKYLVLANMLmk 284 (440)
T KOG1464|consen 271 TCLKYLVLANMLMK 284 (440)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 428
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.95 E-value=1.1 Score=40.28 Aligned_cols=169 Identities=15% Similarity=0.012 Sum_probs=105.0
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837 99 LLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172 (409)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 172 (409)
+.....++..-.+.++.=++...++. .++..+|.-|...|+.+.|++.|.++-........+...+.++-.+-.
T Consensus 119 vE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI 198 (466)
T KOG0686|consen 119 VETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSI 198 (466)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 33333344444444444444444332 367889999999999999999999988877766666666766666666
Q ss_pred HHHHHhhHHhcCCHHHHHHHHHHHHccC----CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------Chh
Q 043837 173 KTKSAEDNVSKGKLRVAVEDFKAALALD----PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------NEE 240 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~ 240 (409)
.+ ++|.....+..++...- .......+.+...-|.+.+.+++|..|..++-.+..- .|.
T Consensus 199 ~~---------~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtps 269 (466)
T KOG0686|consen 199 YM---------GNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPS 269 (466)
T ss_pred hh---------cchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecch
Confidence 66 99988888888877652 1111123446667777888888999999988766432 344
Q ss_pred cHHHHHHH-HHHHHhccCHH---HHHHHHHHHHhhCCCcH
Q 043837 241 LIEALVQR-GEAKLLTEDWE---GAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 241 ~~~~~~~l-a~~~~~~~~~~---~A~~~~~~al~~~p~~~ 276 (409)
+..+|-.+ |.+-+...++. ..-..|+..+++.|.-.
T Consensus 270 dv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 270 DVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred hhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 54444332 22222222222 22245666666666543
No 429
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.94 E-value=4 Score=35.72 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=32.4
Q ss_pred HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837 64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE 119 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 119 (409)
...+..+..+-|+.... +++++|..+.++..+|.--.. -..+|...++++++.
T Consensus 193 ~AWRERnp~~RI~~A~~-ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQ-ALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKA 245 (556)
T ss_pred HHHHhcCcHHHHHHHHH-HHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHH
Confidence 34445555555666555 777788877777777654322 245666666666653
No 430
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.77 E-value=5.2 Score=37.47 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=59.5
Q ss_pred HHHcCChHHHhHHHH--HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHH
Q 043837 32 LRQLCRVKARNSVAE--KELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASA 109 (409)
Q Consensus 32 ~~~~g~~~~A~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 109 (409)
....++++++..... +.+...+ ....-..+.-+.++|-.+.|+.+.. ++...+.+ .++.|+.+.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~rFeL---Al~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVT---------DPDHRFEL---ALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHHhHH---HHhcCCHHHH
Confidence 344677776544443 1121111 1112233444455666677766653 35555554 4688999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 110 ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 110 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
.+..++ .+++..|..||.....+|+++-|..+|.++
T Consensus 338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 876654 346789999999999999999999999985
No 431
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.75 E-value=0.14 Score=28.97 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKE 119 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 119 (409)
++..+|.+-+..++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666666666654
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.65 E-value=0.55 Score=33.19 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCcH------HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837 133 AYYYLADHDVAQRHFQKGLRLDPEHS------ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH 203 (409)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 203 (409)
.....+++..|++.+.+.+....... ....++..++.+.... |++++|+..+++++++....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~---------G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF---------GHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHH
Confidence 34566778888777777776533222 1222455555555555 99999999999999986653
No 433
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.59 E-value=0.5 Score=40.66 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 153 (409)
...++..++..+...++++.+++.+++.+..+|.+...|..+-.+|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999987653
No 434
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.55 E-value=4.4 Score=34.91 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837 122 NNLEALLHRGRAYYYLADHDVAQRHFQK 149 (409)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 149 (409)
.++..+..+|..+++.+++.+|..+|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3677888888888888888888877643
No 435
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=2.5 Score=39.56 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc---cCCCCccchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcC
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA---LDPNHTAHNVHLYLGLCKVLVKLGR-GKDALSSCTEALNIN 238 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~ 238 (409)
.+..++.++..+ |+...|..++..+++ ....++...+.+++.+|..+..++. ..++.+++.+|-+..
T Consensus 451 k~lL~g~~lR~L---------g~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 451 KYLLKGVILRNL---------GDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 456678888888 999999999998884 3333444467799999999999999 999999999997765
Q ss_pred h
Q 043837 239 E 239 (409)
Q Consensus 239 p 239 (409)
.
T Consensus 522 ~ 522 (546)
T KOG3783|consen 522 S 522 (546)
T ss_pred c
Confidence 3
No 436
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.32 E-value=6.5 Score=36.11 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+-+.+..+.++..-|-.+.+|+.........++-+.|+....+++...|. ....++.+|...++.+.-..+|+++..
T Consensus 285 qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 285 QRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 33444333366667777888888888888888888888888888777665 566777777777776666666666543
Q ss_pred c--------C-------CCcHH-HHHHHHH-HH---HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837 153 L--------D-------PEHSE-LKKAYFA-LK---NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL 212 (409)
Q Consensus 153 ~--------~-------p~~~~-~~~~~~~-l~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 212 (409)
. + .++.. ....+.. .. .+..- ..+.-.+..-.+.|...|.++-+..-- ...++.
T Consensus 362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~--~~N~v~r~~Gl~aaR~~F~k~rk~~~~----~h~vyi 435 (660)
T COG5107 362 DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCV--HLNYVLRKRGLEAARKLFIKLRKEGIV----GHHVYI 435 (660)
T ss_pred HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHH--HHHHHHHHhhHHHHHHHHHHHhccCCC----Ccceee
Confidence 1 0 01110 0000000 00 00000 000111124456666777666554311 111332
Q ss_pred HHH-HHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 213 GLC-KVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 213 ~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
.-| .-+...+++..|...|+-.+...|+++......-..++..++-+.|...|+++++.
T Consensus 436 ~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 436 YCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred eHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 222 23556778888888888888888877766666666777788888888888877654
No 437
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=93.25 E-value=0.21 Score=46.39 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCc------hHHHHHHHHHHHHHHHh
Q 043837 275 DMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN------REEAENKFREIAAAYEV 348 (409)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~------~~~a~~~~~~i~~ay~~ 348 (409)
...++.+|..++..|-- ..-++-+.+..-.+...+|++|+++.+..||||.++. +-.+++.|.-+++|+..
T Consensus 371 E~NIRALLSTLh~VLW~---es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 371 EGNIRALLSTLHYVLWP---ESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cccHHHHHHHHhHhhcC---ccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555554432 1123344566677899999999999999999997663 45666666677776654
Q ss_pred c
Q 043837 349 L 349 (409)
Q Consensus 349 l 349 (409)
.
T Consensus 448 f 448 (453)
T KOG0431|consen 448 F 448 (453)
T ss_pred h
Confidence 4
No 438
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.20 E-value=4.1 Score=33.51 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=56.4
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837 98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170 (409)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 170 (409)
.-+++.+...+|+...+.-++..|.+......+-..+.-.|+|++|...++-+-.+.|+...-...|..+..+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888888888888888888876644445444444
No 439
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=93.12 E-value=5.7 Score=34.93 Aligned_cols=166 Identities=12% Similarity=-0.050 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------------------------ChHHHHHHHHHHHccCC-CcH
Q 043837 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLA--------------------------DHDVAQRHFQKGLRLDP-EHS 158 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------------------------~~~~A~~~~~~al~~~p-~~~ 158 (409)
-++|+..-.-++.+-|..++++-.++...+... -.+++...+.+++.... ...
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 468888888888899999998877777665422 23466666777666543 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI- 237 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 237 (409)
. ....+..+...- . .-..-+|..-..+|.-...+.|+ +.+-.|.+.+..+..-.+.++...+.....
T Consensus 292 q---lqAAIaa~HA~a---~-~aedtDW~~I~aLYdaL~~~apS-----PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~ 359 (415)
T COG4941 292 Q---LQAAIAALHARA---R-RAEDTDWPAIDALYDALEQAAPS-----PVVTLNRAVALAMREGPAAGLAMVEALLARP 359 (415)
T ss_pred H---HHHHHHHHHHhh---c-ccCCCChHHHHHHHHHHHHhCCC-----CeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence 2 222233222221 1 12225788878888887788876 446677888777777777777777665543
Q ss_pred -ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837 238 -NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM 283 (409)
Q Consensus 238 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 283 (409)
-..+...+-.+|..+.++|+.++|...|++++.+.++..+....+.
T Consensus 360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 2345567778999999999999999999999999988766444333
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.05 E-value=5.2 Score=34.23 Aligned_cols=62 Identities=21% Similarity=0.095 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh------cHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE------LIEALVQRGEAKLLTEDWEGAVEDLKSA 268 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a 268 (409)
...+...+|..|+..|++++|++.++.+...... ...++..+..|+..+|+.+..+...-+.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4456678899999999999999999988654322 2456677888888888888877665444
No 441
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=1.2 Score=35.63 Aligned_cols=55 Identities=42% Similarity=0.607 Sum_probs=46.6
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCC------CchHHHHHHHHHHHHHHHhc
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNV------DNREEAENKFREIAAAYEVL 349 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~------~~~~~a~~~~~~i~~ay~~l 349 (409)
.+.+.+|++.......++++.|+++....|||+.. +-.+.+++++++|.++|+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999832 23477888888999988753
No 442
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.93 E-value=0.43 Score=26.66 Aligned_cols=30 Identities=7% Similarity=-0.092 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhccCHHHHHHH--HHHHHhhCC
Q 043837 244 ALVQRGEAKLLTEDWEGAVED--LKSAAQQSP 273 (409)
Q Consensus 244 ~~~~la~~~~~~~~~~~A~~~--~~~al~~~p 273 (409)
.++.+|..+...|++++|+.. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555556666666665 224444444
No 443
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.92 E-value=1.8 Score=35.06 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 227 (409)
.+.++++..+.+++++.+.+...++.++..|+.++..+++++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555555555544433222444555555555555554444
No 444
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.70 E-value=0.15 Score=25.98 Aligned_cols=22 Identities=27% Similarity=0.083 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHH
Q 043837 244 ALVQRGEAKLLTEDWEGAVEDL 265 (409)
Q Consensus 244 ~~~~la~~~~~~~~~~~A~~~~ 265 (409)
+.+.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
No 445
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.69 E-value=3.8 Score=39.27 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=67.4
Q ss_pred HHHHHHhCCCchHHHHHHHH---------HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 043837 61 SALKLYDSGEYTKPLEYIDK---------VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRG 131 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~---------~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 131 (409)
.|..++..|+.++|+.+.-. +..+++....+.+...+..+..+..+.-|.+.|.+.-.. -.+.
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiV 780 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLV 780 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHh
Confidence 45556777888888776532 122233344455555566666666666666666554221 2344
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH----HHHhhHHhcCCHHHHHHHHHHH
Q 043837 132 RAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT----KSAEDNVSKGKLRVAVEDFKAA 196 (409)
Q Consensus 132 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~A~~~~~~a 196 (409)
..+...++|++|...-++--+.-|+ ++...+.-+... +.-..+.+.|+-.+|...+++.
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~d------Vy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDD------VYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hheeecccchHhHhhhhhCcccccc------ccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 5667788999998887776555554 444444444333 1112233345555555555543
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=92.61 E-value=4.3 Score=37.22 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH-HHHHHH--HHHHHHccCHHHHHHHHHHHHhh
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS-KAKLLK--VKLLLAAKDYASAISETGYLLKE 119 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~-~~~~~~--a~~~~~~~~~~~A~~~~~~al~~ 119 (409)
...+..+..+++.++|..|...+......+.+... ..+..+ |..++..-++.+|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45567888888999999999999884333233222 233333 33445677888898888887765
No 447
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=92.59 E-value=0.092 Score=51.85 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=8.4
Q ss_pred cccccCCCCCCCCC
Q 043837 383 FTFHFEGGFPGGFG 396 (409)
Q Consensus 383 ~~~~~~gg~~gg~~ 396 (409)
|+++|+|||||+++
T Consensus 624 ~~~~~~~~~~~~~~ 637 (653)
T PTZ00009 624 MPGGMPGGMPGGAG 637 (653)
T ss_pred CCCCCCCCCCCCCC
Confidence 34446777777554
No 448
>COG4907 Predicted membrane protein [Function unknown]
Probab=92.58 E-value=0.55 Score=42.43 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=24.4
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 249 GEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 249 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
+..+.+-..+..=+..|...-+..|++..+|+..-.--.++
T Consensus 482 ~~~~~~W~aFKnfLsd~s~lke~~pesI~~W~~ylVYatAL 522 (595)
T COG4907 482 AETISKWQAFKNFLSDYSQLKEAKPESIHLWEQYLVYATAL 522 (595)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhCCCcceehHhhhhhhhhhh
Confidence 33444445556666677777777788877776654433333
No 449
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=8.3 Score=34.90 Aligned_cols=246 Identities=17% Similarity=0.108 Sum_probs=138.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCC-CHHH
Q 043837 61 SALKLYDSGEYTKPLEYIDKVVLVFSPA--------CSKAKLLKVKLLLAAKDYASAISETGYLLKE-----DEN-NLEA 126 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~ 126 (409)
-.+.++.++++.+|.++-+..+..+.-. ....|+.+..+|...++...-...+...+.. +.. ....
T Consensus 132 v~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavL 211 (493)
T KOG2581|consen 132 VLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVL 211 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHH
Confidence 3444566688888888877755444322 2456777788888888866655555554432 222 2334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837 127 LLHRGRAYYYLADHDVAQRHFQKGLRLDP-EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205 (409)
Q Consensus 127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 205 (409)
.+.+-..|...+.|+.|-....++.--.. .+.+....++.+|.+.... .+|..|.+++.+|+...|.+..
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiq---------ldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQ---------LDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhh---------cchhHHHHHHHHHHHhCcchhh
Confidence 56778888899999999888877653221 2224556777777777766 9999999999999999997432
Q ss_pred chH--HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHH--HHhccCHHHHHHHHHHHHhhCCCcHHHH--
Q 043837 206 HNV--HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEA--KLLTEDWEGAVEDLKSAAQQSPQDMNIR-- 279 (409)
Q Consensus 206 ~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~-- 279 (409)
.-. .+...+..+-.-+|++.+-.-..+..++. ....|+.+..+ .-.+.++.+-++-|..-+..+....-+.
T Consensus 283 lGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~k---sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRL 359 (493)
T KOG2581|consen 283 LGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRK---SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRL 359 (493)
T ss_pred hhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHH
Confidence 111 11222233344567766544333332221 22334444333 3344556666666666665554432221
Q ss_pred ------HHHHHHHHHHhhcchhhhhhhhcccccCCHH-HHHHHHHH
Q 043837 280 ------EALMRAEKALKMSKRKDWYKILGVSKTASIS-EIKRAYKK 318 (409)
Q Consensus 280 ------~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-e~~~~y~~ 318 (409)
..+..+-....+-.-.|.-+.|++....+.+ -+.++.|.
T Consensus 360 R~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRD 405 (493)
T KOG2581|consen 360 RHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRD 405 (493)
T ss_pred HHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHh
Confidence 1111111111222234666677776655433 34455554
No 450
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.3 Score=42.79 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKA 163 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (409)
...+.+++.+-+..+.+..|+.....++..+++...+++.++..+..+.++++|++.++.+....|++..+...
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 44566788999999999999999999999999999999999999999999999999999999999999884333
No 451
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.25 E-value=0.94 Score=39.03 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
...++..++..+...++++.++..+++.+..+|-+..+|..+-.+|...|+...|+..|++..+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45578888999999999999999999999999999999999999999999999999999888765
No 452
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.18 E-value=0.67 Score=25.87 Aligned_cols=20 Identities=15% Similarity=-0.044 Sum_probs=8.9
Q ss_pred HHHHHHHHHHccCHHHHHHH
Q 043837 93 KLLKVKLLLAAKDYASAISE 112 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~ 112 (409)
++.+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33444444444444444444
No 453
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.08 E-value=7.9 Score=34.01 Aligned_cols=131 Identities=11% Similarity=-0.047 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL 83 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 83 (409)
..+-|+.-..+++++|..+.+|..++.--. --..+|...+.+++.... ..|.+....-..+.-.+| ..
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e---~~yr~sqq~qh~~~~~da-------~~ 267 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE---TIYRQSQQCQHQSPQHEA-------QL 267 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH---HHHhhHHHHhhhccchhh-------hh
Confidence 445677788899999999999988875321 123344444444444322 223222222222221111 11
Q ss_pred hhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCChHHHHHHH
Q 043837 84 VFSPAC--SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL--EALLHRGRAYYYLADHDVAQRHF 147 (409)
Q Consensus 84 ~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~ 147 (409)
..+ .+ ..+-..+|.|..++|+..+|++.++...+-.|-.. .++-++-..+....-|.+....+
T Consensus 268 rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 268 RRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred hcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22 33445679999999999999999999988777322 23345555555554444443333
No 454
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.01 E-value=2.3 Score=41.32 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=118.2
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHh---cCChHHHHHHHHHHHccC-CCcH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYY---LADHDVAQRHFQKGLRLD-PEHS 158 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~al~~~-p~~~ 158 (409)
.+++..++-..|....+|+.-++..+..- .-|+..+ ..+..+.++-+ -|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 57778888888888999987777666544 4453222 12223333332 367888888888887754 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhc
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR-GKDALSSCTEALNI 237 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~ 237 (409)
+ .+...|.+|..+-.+..+-+.+..+.|+++|+++++..|.. ..=.|++.++...|+ ++...+.-.-.+.+
T Consensus 279 D---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-----~sGIN~atLL~aaG~~Fens~Elq~IgmkL 350 (1226)
T KOG4279|consen 279 D---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-----YSGINLATLLRAAGEHFENSLELQQIGMKL 350 (1226)
T ss_pred c---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-----hccccHHHHHHHhhhhccchHHHHHHHHHH
Confidence 4 78888999988766666667788899999999999999972 233456666665553 44444433333333
Q ss_pred Ch--------hcHHHHHHHHH---HHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 238 NE--------ELIEALVQRGE---AKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 238 ~p--------~~~~~~~~la~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
+. .....|...|. +..-.+++.+|+..-+...++.|-...+...+..
T Consensus 351 n~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 351 NSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred HHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 21 11122222222 2234578999999999999988876554444433
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.80 E-value=1.1 Score=40.77 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLK--------EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+...+.+++.-+|+|..|++.++.+-- ..+-...+++..|.+|..+++|.+|++.|..++.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999998875411 1223455789999999999999999999999775
No 456
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.67 E-value=0.32 Score=24.75 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 043837 127 LLHRGRAYYYLADHDVAQRHF 147 (409)
Q Consensus 127 ~~~l~~~~~~~~~~~~A~~~~ 147 (409)
.+.+|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444444444443
No 457
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=8.5 Score=33.10 Aligned_cols=201 Identities=13% Similarity=0.022 Sum_probs=114.7
Q ss_pred HHHHHHHHHcCChHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHhCCCchHHHHHHHHH---HHhh-CCCcHHH
Q 043837 26 FHRGSVLRQLCRVKARNSVAEKELSQ---------LLQAQSTFDSALKLYDSGEYTKPLEYIDKV---VLVF-SPACSKA 92 (409)
Q Consensus 26 ~~la~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~-~p~~~~~ 92 (409)
..+|+-.....++++|+..+.+.+.. .+......+....+...|++..--...... .... .|....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45677777888888888888887763 223334455666677777776544443320 0000 1222222
Q ss_pred HHHHHHHH-HHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHcc---CCCcHHHHH
Q 043837 93 KLLKVKLL-LAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLRL---DPEHSELKK 162 (409)
Q Consensus 93 ~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 162 (409)
...+..-. .....++.-+..+...++-...... .-..+..+++..+.|.+|+..+...+.- ..+-.....
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22221111 1234455666666666553222111 2245677889999999999988776642 122222222
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-----CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
++..-..++..+ .+..++...+..|-.. +|. ...+.+-..-|..+....+|..|..+|-++++-
T Consensus 167 vhllESKvyh~i---------rnv~KskaSLTaArt~Ans~YCPp--qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYHEI---------RNVSKSKASLTAARTLANSAYCPP--QLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHHH---------HhhhhhhhHHHHHHHHhhccCCCH--HHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 555555666665 6677776666655432 232 112334444567777888999999999999874
No 458
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.37 E-value=1.2 Score=38.10 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837 210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAA 269 (409)
Q Consensus 210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 269 (409)
.+...+..|...|.+.+|+..+++++.++|-+...+..+-.++..+||--.|++.|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444567778888999999999999999999888888888888888888888888777653
No 459
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.21 E-value=1.1 Score=26.42 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=18.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 246 VQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 246 ~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
+.+|.+|+.+|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4677777777777777777777774
No 460
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.94 E-value=2.3 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
+.....+|+.+-..|++.+|+.+|.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~ 30 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYK 30 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3344455555555566665555553
No 461
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.72 E-value=1.2 Score=38.91 Aligned_cols=62 Identities=16% Similarity=0.019 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 043837 109 AISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK 173 (409)
Q Consensus 109 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~ 173 (409)
|..+|.+|+.+.|++...|+.+|.++...++.-.|+-+|-+++......+. +..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~---A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPS---ARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHH
Confidence 566777777777777777777777777777777777777777755433343 55555555443
No 462
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.08 Score=47.11 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=9.7
Q ss_pred HHHHHHHHhcC
Q 043837 340 REIAAAYEVLG 350 (409)
Q Consensus 340 ~~i~~ay~~l~ 350 (409)
.+|++||++|+
T Consensus 19 ~EIKkAYRkLA 29 (371)
T COG0484 19 EEIKKAYRKLA 29 (371)
T ss_pred HHHHHHHHHHH
Confidence 47999999998
No 463
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.41 E-value=20 Score=35.58 Aligned_cols=237 Identities=9% Similarity=-0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-----------------hHHHHHHHH--HHHHHHHHHHHHHHHHhCC
Q 043837 9 DDLNTAIEADPTLSEAYFHRGSVLRQLCRVKAR-----------------NSVAEKELS--QLLQAQSTFDSALKLYDSG 69 (409)
Q Consensus 9 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-----------------~~~~~~~l~--~~~~~~~~~~~a~~~~~~~ 69 (409)
..+.+.....|.+.......+.+....|+.++| ...+..... ..........+....+..+
T Consensus 116 ~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~ 195 (644)
T PRK11619 116 RGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG 195 (644)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q ss_pred CchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837 70 EYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQK 149 (409)
Q Consensus 70 ~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 149 (409)
+...|..+... + .+........+..++..-.+......... .+........++..-....+.+.|...+.+
T Consensus 196 ~~~lA~~l~~~-l---~~~~~~~a~a~~al~~~p~~~~~~~~~~~-----~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~ 266 (644)
T PRK11619 196 NTGLVTYLAKQ-L---PADYQTIASALIKLQNDPNTVETFARTTG-----PTDFTRQMAAVAFASVARQDAENARLMIPS 266 (644)
T ss_pred CHHHHHHHHHh-c---ChhHHHHHHHHHHHHHCHHHHHHHhhccC-----CChhhHHHHHHHHHHHHHhCHHHHHHHHHH
Q ss_pred HHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC-HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHH
Q 043837 150 GLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK-LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDAL 228 (409)
Q Consensus 150 al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 228 (409)
......-+..........-...... .. ..+|...+..+.....+ .........+.+..++++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~lA~~~a~---------~~~~~~a~~w~~~~~~~~~~-----~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 267 LVRAQKLNEDQRQELRDIVAWRLMG---------NDVTDEQAKWRDDVIMRSQS-----TSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHh---------ccCCHHHHHHHHhcccccCC-----cHHHHHHHHHHHHccCHHHHH
Q ss_pred HHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837 229 SSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268 (409)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 268 (409)
..+...-....+.....+.+|+++..+|+.++|...|+++
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
No 464
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=0.73 Score=35.11 Aligned_cols=68 Identities=26% Similarity=0.491 Sum_probs=46.3
Q ss_pred chhhhhhhhcc--cccCCHHHHHHHHHHHHhccCCCCC----CCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 293 KRKDWYKILGV--SKTASISEIKRAYKKLALQWHPDKN----VDNREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 293 ~~~~~~~~l~~--~~~~~~~e~~~~y~~~a~~~~~d~~----~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
....||.+.|. .....+.-+...|....+..|||.. ......+.+--.++++||..|.||=.|++|-.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34556666643 3333444444466666777788872 23445677778899999999999999999965
No 465
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.78 E-value=1.5 Score=38.23 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=41.0
Q ss_pred HHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHh
Q 043837 189 AVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLL 254 (409)
Q Consensus 189 A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 254 (409)
|+.+|.+|+.+.|+ +...|+.+|.++...++.=.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~----~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS----NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT----BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC----CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777777777777 566777777777777777777777777776544446666666666655
No 466
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=89.26 E-value=15 Score=33.79 Aligned_cols=62 Identities=23% Similarity=0.163 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH--HHHHH--HHHHHhcCChHHHHHHHHHHHcc
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLE--ALLHR--GRAYYYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--~~~~~~~~~~~~A~~~~~~al~~ 153 (409)
.....+..++..++|..|...+..++..-|.... .+..+ |..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456778888999999999999999986344333 34444 44556677899999999998765
No 467
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.19 E-value=11 Score=31.17 Aligned_cols=61 Identities=23% Similarity=0.202 Sum_probs=42.4
Q ss_pred HHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 217 VLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
.+++.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3455666677777777777777777776666777777777777777777777777776543
No 468
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.92 E-value=8.9 Score=34.73 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-- 238 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 238 (409)
..++..++.-|... |+.+.|++.|.++-..+.+... ....+.++-.+-..+++|.....+..++...-
T Consensus 150 Rra~~Dl~dhy~~c---------G~l~~Alr~YsR~RdYCTs~kh-vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 150 RRALEDLGDHYLDC---------GQLDNALRCYSRARDYCTSAKH-VINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHHHh---------ccHHHHHhhhhhhhhhhcchHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 34666666666666 9999999999998777665333 67788889999999999998888888876651
Q ss_pred --h----hcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837 239 --E----ELIEALVQRGEAKLLTEDWEGAVEDLKSAA 269 (409)
Q Consensus 239 --p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al 269 (409)
. -.+.+.+.-|.+.+.+++|..|..++-.+.
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 124566777888888889999999886654
No 469
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.79 E-value=20 Score=33.20 Aligned_cols=243 Identities=11% Similarity=-0.025 Sum_probs=127.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc
Q 043837 10 DLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC 89 (409)
Q Consensus 10 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~ 89 (409)
.+++++.--|-.++.|+.....+...++-+.|+......+...+.. .+..+..+-...+-+....+|++....+
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL--~~~lse~yel~nd~e~v~~~fdk~~q~L---- 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL--TMFLSEYYELVNDEEAVYGCFDKCTQDL---- 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch--heeHHHHHhhcccHHHHhhhHHHHHHHH----
Confidence 4677777778888888888888888888888877776665543331 1222222222222222233333311110
Q ss_pred HHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLA---AKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA 166 (409)
Q Consensus 90 ~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 166 (409)
.--+..+..-.. -|+++...+.+-+-+. ...-+|..+-..-.+..-.+.|...|-++-+.---... ++..
T Consensus 364 -~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~---vyi~ 436 (660)
T COG5107 364 -KRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH---VYIY 436 (660)
T ss_pred -HHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc---eeee
Confidence 000111111111 2233222222222111 22333433333333444466677777776654312222 2222
Q ss_pred HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc--HHH
Q 043837 167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL--IEA 244 (409)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~ 244 (409)
.+.+.. ..++++..|-..|+-.+...|+++ ......-..+...++-..|...|++++..-... ...
T Consensus 437 ~A~~E~--------~~~~d~~ta~~ifelGl~~f~d~~----~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 437 CAFIEY--------YATGDRATAYNIFELGLLKFPDST----LYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred HHHHHH--------HhcCCcchHHHHHHHHHHhCCCch----HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 222211 122777778888888887777743 233333445566777778888888776543322 455
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
|..+-..-..-|+...+...-++..++.|....
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 556666667778888888888888888887543
No 470
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.66 E-value=15 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=22.0
Q ss_pred ChhcHHHHHHHHH-HHHhccCHHHHHHHHHHHHhh
Q 043837 238 NEELIEALVQRGE-AKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 238 ~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~ 271 (409)
.|.....+..++. .|...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555566665554 466778999888877766655
No 471
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.45 E-value=2.2 Score=36.58 Aligned_cols=59 Identities=17% Similarity=-0.009 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
.+...+..|...|.+.+|++..++++.++|-+...+..+-.++...|+--.+++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445667777778888888888888888877777777777777777766666666653
No 472
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.07 E-value=24 Score=33.27 Aligned_cols=215 Identities=15% Similarity=0.073 Sum_probs=128.2
Q ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837 86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165 (409)
Q Consensus 86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 165 (409)
.|-+...+..+-.++.....+.-....+.+.+.... +..+++.++.+|... ..++-....++.++.+-++.. .-.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv---~~R 136 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV---IGR 136 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH---HHH
Confidence 455666666777777777778888888999998754 577899999999988 567778888888888877776 444
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC-CC--CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh-hc
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD-PN--HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE-EL 241 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~ 241 (409)
.++..|.. .+-+++..+|.+++... |. +.. ..++|..+-. +--.+.+.-+....+.-+... ..
T Consensus 137 eLa~~yEk----------ik~sk~a~~f~Ka~yrfI~~~q~~~-i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~ 203 (711)
T COG1747 137 ELADKYEK----------IKKSKAAEFFGKALYRFIPRRQNAA-IKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGR 203 (711)
T ss_pred HHHHHHHH----------hchhhHHHHHHHHHHHhcchhhhhh-HHHHHHHHHH--hccccHHHHHHHHHHHHHhhccch
Confidence 55555443 67788888898887632 21 100 2223332221 111223333332222222111 11
Q ss_pred HH-HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-Hh-hcchhhhhhhhccccc-CCHHHHHHHHH
Q 043837 242 IE-ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA-LK-MSKRKDWYKILGVSKT-ASISEIKRAYK 317 (409)
Q Consensus 242 ~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~-~~~~~~~~~~l~~~~~-~~~~e~~~~y~ 317 (409)
.. ++...-.-|....+|++|++.+...++.+..+..+++.+..-.+. .+ .+.-.+|.++-.++.. .+..+....+.
T Consensus 204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFe 283 (711)
T COG1747 204 GSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFE 283 (711)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHH
Confidence 12 222233456677899999999999999999988887776554332 11 1122345444444432 23344444444
Q ss_pred H
Q 043837 318 K 318 (409)
Q Consensus 318 ~ 318 (409)
+
T Consensus 284 k 284 (711)
T COG1747 284 K 284 (711)
T ss_pred H
Confidence 4
No 473
>COG4907 Predicted membrane protein [Function unknown]
Probab=88.00 E-value=0.43 Score=43.10 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=5.2
Q ss_pred HHHHHHhcCChh
Q 043837 342 IAAAYEVLGDDD 353 (409)
Q Consensus 342 i~~ay~~l~d~~ 353 (409)
+.+|++.+-+.+
T Consensus 528 Vvkam~~~~~~e 539 (595)
T COG4907 528 VVKAMRKALDME 539 (595)
T ss_pred HHHHHHHhCcHh
Confidence 444444444433
No 474
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.81 E-value=1.7 Score=22.93 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSV 31 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 31 (409)
|+++.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 578899999999999999999999877654
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=86.58 E-value=19 Score=30.56 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhCCC-cHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q 043837 59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPA-CSKAKLLKVKLLL-AAKDYASAISETGYLLKEDENNL-EALLHRGRAYY 135 (409)
Q Consensus 59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~-~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~ 135 (409)
...|...-..++|++.+.+..+ ++..+|. +..-...++.+|- ..+....+...+........... .....+..-|.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~-~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQ-LIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH-HHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-HHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 3344555555666666666666 4444443 3444445555442 23444455555544444332220 11111111111
Q ss_pred -----hcC-ChHHHHHHHHHHHccCCCcHHH-HHHHHHHHHHHHHHHHHhhHH-hcCCHHHHHHHHHHHHc-----cCCC
Q 043837 136 -----YLA-DHDVAQRHFQKGLRLDPEHSEL-KKAYFALKNLLKKTKSAEDNV-SKGKLRVAVEDFKAALA-----LDPN 202 (409)
Q Consensus 136 -----~~~-~~~~A~~~~~~al~~~p~~~~~-~~~~~~l~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~-----~~~~ 202 (409)
.+. --.+.+..+...|-....+... .-.+...|..+..+.....-- ...-.+.|...|++|+. +.|.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence 100 0122333333322222222222 223334555555542221110 01224667777777765 5677
Q ss_pred CccchHHHHHHHHHHH-HHcCChhHHHHHHHHHHh
Q 043837 203 HTAHNVHLYLGLCKVL-VKLGRGKDALSSCTEALN 236 (409)
Q Consensus 203 ~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~ 236 (409)
+|. ...+..|.+..| -.+++.++|+...++++.
T Consensus 164 ~p~-rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 164 HPL-RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SHH-HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 665 445555666555 448999999998888764
No 476
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.50 E-value=3.5 Score=31.58 Aligned_cols=48 Identities=29% Similarity=0.206 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA 138 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 138 (409)
+.....+.-.+..|++.-|.++++.++..+|++..+...++.++..++
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555555444443
No 477
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.46 E-value=2.9 Score=24.59 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=12.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 043837 129 HRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~al 151 (409)
.++.+|...|+.+.|...++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555554
No 478
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=22 Score=36.20 Aligned_cols=174 Identities=13% Similarity=0.041 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHccCCCcHHHHHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLK----EDENNLEALLHRGRAYYYLADH--DVAQRHFQKGLRLDPEHSELKKAYF 165 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~ 165 (409)
-+..++..|...|++++|++.+.+... .++...+.+-.+-..+..++.. +-..++-.-.+..+|..... ++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~--Ift 583 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ--IFT 583 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee--eee
Confidence 356778888889999999999988887 3333344444444444445544 55666666666666654320 111
Q ss_pred H---HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc--------CChhHHHHH--HH
Q 043837 166 A---LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL--------GRGKDALSS--CT 232 (409)
Q Consensus 166 ~---l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~--~~ 232 (409)
. ...-.........++.....+-++.+++.++...... ....+..+...|.+. ++-+++.+. .+
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~---~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~re 660 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT---STLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVRE 660 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc---chHHHHHHHHHHHHHHhhccCchhccccchhhhHHH
Confidence 1 0000011123444556688888999999998866552 122333333333221 122334333 22
Q ss_pred HHHhc-------Chh-------cHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 233 EALNI-------NEE-------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 233 ~al~~-------~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
+.... +|. ....|..++.++.++++.++|+..|-..+.
T Consensus 661 kl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 661 KLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 22211 221 245677788888888988888887766554
No 479
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.03 E-value=5.9 Score=36.32 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=32.4
Q ss_pred HHHHHHhhHHhcCCHHHHHHHHHHHHccCCC-----CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPN-----HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
......+...-.|+|..|++.++.. +++.. -+.....+++.+|.+|+.+++|.+|++.|..++.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666655532 11111 1111344556666666666666666666665553
No 480
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.65 E-value=5.7 Score=39.02 Aligned_cols=114 Identities=23% Similarity=0.330 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSP----ACSKAKLLKVKLLLAA--KDYASAISETGYLLKEDENNLEALLHR 130 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p----~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l 130 (409)
........++..+++..|..-|.. .+..-| .......+.+.|++.. ++|.+++....-++...|....+++..
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~-~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDC-AIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhh-hheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 334455666777777777655555 444444 3456667777777754 689999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837 131 GRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL 171 (409)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 171 (409)
+.+|...+.++-|++.+.-....+|.+..+......+..++
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999998888888999866433444444443
No 481
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.64 E-value=9.1 Score=34.97 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHH----------HHhhCCCcHHHHHHHHHHHHHccCH----------HHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKV----------VLVFSPACSKAKLLKVKLLLAAKDY----------ASAISETG 114 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~ 114 (409)
....+.+|..++....|++|+.++-.+ +++.-.+.+-...-+.+||+.+.+. ..|.+.|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 445677888888888888888877552 2222233444555667888887653 23333333
Q ss_pred HHHh--------h-CCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 115 YLLK--------E-DENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 115 ~al~--------~-~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
++.- + .+..++ .+..-|.+.+.+|+-++|.++++.+..
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3321 1 223332 456779999999999999999998865
No 482
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.59 E-value=2.9 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHH
Q 043837 105 DYASAISETGYLLKEDENNLEALLHR 130 (409)
Q Consensus 105 ~~~~A~~~~~~al~~~p~~~~~~~~l 130 (409)
+.+.|...|++++...|.++..|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34455555555555555555554443
No 483
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=85.50 E-value=25 Score=31.02 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=33.1
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837 102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQK 149 (409)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 149 (409)
..+++.+.++..++.+..+|-..+.++..+.++..+| ++.+...+..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~ 157 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRD 157 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 5566777777778877777777777788888888877 4444444443
No 484
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.95 E-value=7.6 Score=33.22 Aligned_cols=62 Identities=16% Similarity=-0.038 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN------NLEALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
..+...+|..|+..|++++|++.|+.+...... ...++..+..|+..+|+.+..+.+.-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345668899999999999999999999765432 23466788889999999988887766554
No 485
>PF12854 PPR_1: PPR repeat
Probab=84.94 E-value=2.9 Score=22.85 Aligned_cols=27 Identities=7% Similarity=-0.252 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGY 115 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 115 (409)
+...|..+...+.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455666677777777777777776654
No 486
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=24 Score=35.30 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837 98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177 (409)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 177 (409)
.++.+..-|.-|+...+.--.-...-...+...|..++..|++++|...|-+++..-....- .
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-----------------i 404 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-----------------I 404 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-----------------H
Q ss_pred hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH------------HHHHHhc--ChhcHH
Q 043837 178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS------------CTEALNI--NEELIE 243 (409)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~------------~~~al~~--~p~~~~ 243 (409)
..+++.....+-..+++...+..-. +..--..|-.||.++++.++-.+. ++.++++ ..+..+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla----~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA----NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc----cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHH
Q ss_pred HHHHHHH-----------HHHhccCHHHHHHHHHHH
Q 043837 244 ALVQRGE-----------AKLLTEDWEGAVEDLKSA 268 (409)
Q Consensus 244 ~~~~la~-----------~~~~~~~~~~A~~~~~~a 268 (409)
--..+|. ++..+++|++|+.+++.+
T Consensus 481 ~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC
No 487
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=84.42 E-value=1.3 Score=43.00 Aligned_cols=39 Identities=23% Similarity=0.016 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 043837 364 IEETGMGGGGFNFGGGGQQFTFHFEGGFPGGFGGDGGFP 402 (409)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~~~~~~gg~~gg~~~~gg~~ 402 (409)
|..+|++....+..|||++-+++++|||+||.|...|++
T Consensus 564 Pg~aG~PPpPppppg~~gppPPPpp~g~~Gg~ppPP~~g 602 (1102)
T KOG1924|consen 564 PGIAGGPPPPPPPPGGGGPPPPPPPGGFLGGPPPPPPPG 602 (1102)
T ss_pred CcccCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
No 488
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=0.67 Score=40.80 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcC---Chhh
Q 043837 339 FREIAAAYEVLG---DDDK 354 (409)
Q Consensus 339 ~~~i~~ay~~l~---d~~~ 354 (409)
-.+|++||++|+ +|+|
T Consensus 18 ~~eikkayrkla~k~HpDk 36 (337)
T KOG0712|consen 18 EEEIKKAYRKLALKYHPDK 36 (337)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 457999999998 5554
No 489
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=84.18 E-value=24 Score=29.65 Aligned_cols=107 Identities=17% Similarity=0.072 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHccCCCCcc--------chHHHHHHHHHHHHHcCChhH-H-HHHHHHHHhc--Chh--cHHHHHHH
Q 043837 183 KGKLRVAVEDFKAALALDPNHTA--------HNVHLYLGLCKVLVKLGRGKD-A-LSSCTEALNI--NEE--LIEALVQR 248 (409)
Q Consensus 183 ~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~-A-~~~~~~al~~--~p~--~~~~~~~l 248 (409)
.|+++.|+++..-+|+.+-.-|. ..++-...-+......|..-+ . ...+..+..- -|+ ....+...
T Consensus 96 ~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~ 175 (230)
T PHA02537 96 IGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKAA 175 (230)
T ss_pred ccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 39999999999999986432211 122333344445555555321 1 1112222110 122 34566667
Q ss_pred HHHHH---------hccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 249 GEAKL---------LTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 249 a~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
|..+. ..++...|+.++++|++++|+- -+...+.++...++
T Consensus 176 G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 176 GYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 77773 4568889999999999999873 45555566655554
No 490
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.19 E-value=40 Score=31.48 Aligned_cols=166 Identities=15% Similarity=0.066 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCh-------HHHHHHHHHHHccCCC--
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYLADH-------DVAQRHFQKGLRLDPE-- 156 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~p~-- 156 (409)
....+|.+++.+++|+-|...|+.+.+-..++.. ++-..+.+.+..+.. +....+++.++...-.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 4556899999999999999999998875433211 223344444444422 2333344443321111
Q ss_pred ----c--HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCcc-chHHHHHHHHHHH--HHcCChh
Q 043837 157 ----H--SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTA-HNVHLYLGLCKVL--VKLGRGK 225 (409)
Q Consensus 157 ----~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~-~~~~~~~~la~~~--~~~~~~~ 225 (409)
+ ............++... +.+.+|...+-+.... ..+... ..+.++...|.|+ .......
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~---------~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~ 360 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSR---------GGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPS 360 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhc---------CccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCC
Confidence 0 11112233333333333 7777777666655544 222110 0234455566666 2111100
Q ss_pred HHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 226 DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
.-..-++ ..+--+..-|.-|.+.|+...|..+|..++....
T Consensus 361 ~~~~r~R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 361 PGLTRFR-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ccchhhH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0000000 1122234456788999999999999999988764
No 491
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.08 E-value=65 Score=33.83 Aligned_cols=72 Identities=13% Similarity=0.003 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc---HHHHHHHHHHHHhccCHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL---IEALVQRGEAKLLTEDWE 259 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~ 259 (409)
+-.+.++..-.+|++.-|++.+..+..+..+=.-+..+|.+-+|...+ -.+|+. -..+..+-.++++.|.++
T Consensus 997 n~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 997 NHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred ccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 777888888888888666544335666666666677888888876543 334442 344555666777777665
No 492
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.02 E-value=5.1 Score=30.69 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY 106 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 106 (409)
.....+..|...+..|++.-|.++.+. ++..+|++..+...++.++.+++.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~-l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDH-LVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHH-HHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345667777777888888888888877 6777788888887777777766643
No 493
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.95 E-value=34 Score=30.44 Aligned_cols=42 Identities=14% Similarity=-0.084 Sum_probs=31.1
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
.++.+-+..+..+...+++.++.-.+.+++-+.|+...+...
T Consensus 211 ~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~q 252 (449)
T COG3014 211 LNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQ 252 (449)
T ss_pred chHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHH
Confidence 355666777777888888888888888888888885554443
No 494
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=81.77 E-value=28 Score=31.87 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHH
Q 043837 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEK 47 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 47 (409)
.-+|+..++.++..+|.+....+.+..+|..+|-...|...+..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45789999999999999999999999999999999988777754
No 495
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=81.56 E-value=38 Score=30.13 Aligned_cols=168 Identities=13% Similarity=0.035 Sum_probs=107.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCHH--H
Q 043837 59 FDSALKLYDSGEYTKPLEYIDKVVLVFS-----PACSKAKLLKVKLLLAAKDYASAISETGYLLKED-----ENNLE--A 126 (409)
Q Consensus 59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~--~ 126 (409)
...+..++..++|.+|+.+....+.++. +.-.+++..-..+|..+.+..+|...+..|-... |.... .
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 3455667888999999998877543332 3346777888889999999999988888775431 22111 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHccCC
Q 043837 127 LLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK--AALALDP 201 (409)
Q Consensus 127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~~ 201 (409)
=..-|..+....+|..|..+|-+|++-.. ++......+..+-.+-..+ +..++.-..+. .+++...
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMl---------n~~ddv~~lls~K~~l~y~g 282 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIML---------NLPDDVAALLSAKLALKYAG 282 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHh---------cCHHHHHHHHhhHHHHhccC
Confidence 24556777777999999999999998432 2233222222222233333 55555444443 3444333
Q ss_pred CCccchHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcCh
Q 043837 202 NHTAHNVHLYLGLCKVLVK--LGRGKDALSSCTEALNINE 239 (409)
Q Consensus 202 ~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p 239 (409)
. ...+....+.++.+ +.+|+.|+..|..-+..+|
T Consensus 283 ~----~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 283 R----DIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred c----chHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 3 46677777777654 4578888888888777766
No 496
>PF12854 PPR_1: PPR repeat
Probab=81.54 E-value=3.8 Score=22.37 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHH
Q 043837 208 VHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 208 ~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
...|..+-..|.+.|+.++|++.+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHH
Confidence 334444444555555555554444
No 497
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.44 E-value=14 Score=24.93 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCCchHHHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
....+|+..-..|+|++|+.+|.
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~ 30 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQ 30 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHH
Confidence 33444445555555555555543
No 498
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.13 E-value=35 Score=29.42 Aligned_cols=210 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HhcCChHH
Q 043837 71 YTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAA--KDYASAISETGYLLKEDENNLEALLHRGRAY------YYLADHDV 142 (409)
Q Consensus 71 ~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~------~~~~~~~~ 142 (409)
++.-+..++. ++..+|.+..+|..+-.++... .++..-+...++.++.||.|...|..+-.+. ..-.++..
T Consensus 90 ldneld~~~~-~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~ 168 (328)
T COG5536 90 LDNELDFLDE-ALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKH 168 (328)
T ss_pred hhcHHHHHHH-HHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHH
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC
Q 043837 143 AQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG 222 (409)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~ 222 (409)
-.++-..++..++.+.. +|...-......-......++.-+++-+++.-.++-.+|++...-.....-.+.-....-
T Consensus 169 e~eytt~~I~tdi~N~S---aW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~ 245 (328)
T COG5536 169 ELEYTTSLIETDIYNNS---AWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIV 245 (328)
T ss_pred HHHhHHHHHhhCCCChH---HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHH
Q ss_pred ChhHHHHHHHHHHhc-------------ChhcHHHHHHHHHHHHhccCHHHHHHHHH----HHHhhCCCcHHHHHHHHH
Q 043837 223 RGKDALSSCTEALNI-------------NEELIEALVQRGEAKLLTEDWEGAVEDLK----SAAQQSPQDMNIREALMR 284 (409)
Q Consensus 223 ~~~~A~~~~~~al~~-------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~----~al~~~p~~~~~~~~l~~ 284 (409)
.+.+-++.+.+-+.+ -|--...+..-..|+.......++-..-. ++++.+|-....+..+..
T Consensus 246 ~~~e~v~~L~k~~~iin~~el~l~~ken~~~l~~~l~lE~l~~~~~~~~te~d~e~~alv~~~i~~DP~Rr~~y~~l~~ 324 (328)
T COG5536 246 MIGEKVEDLGKYIVIINGKELDLGPKENLPCLHSLLELEFLCHAEKALLTERDIEQKALVELAIKVDPARRNLYSTLHE 324 (328)
T ss_pred HHHHHHHHHHhhheeccccccccCCccccHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHhcChHHHHHHHHHHh
No 499
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=80.96 E-value=22 Score=27.02 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
+.....+.+++.++..++.++..+..+..+|.....-+ ....+......-..-..+..+.+.+-+++++.++.+
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~-----ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k- 94 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQK-----EIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKK- 94 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHH-----HHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHh-
Q ss_pred HHhhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 043837 82 VLVFSPACSKAKLLKVKLLLAA-KDYASAISETGYLLKEDENNLEALLHRGRAYYYLAD 139 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 139 (409)
..-+.....++... ++++.|++++.+ +.+++.|..++..+.....
T Consensus 95 --------~~~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~~~~ 140 (140)
T smart00299 95 --------DGNFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLDKPR 140 (140)
T ss_pred --------hcCHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHccCC
No 500
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.52 E-value=34 Score=33.00 Aligned_cols=124 Identities=16% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 23 EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA 102 (409)
Q Consensus 23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~ 102 (409)
+.+...+..+..+|- .+++|....+....++.|+.+ |+++.|..+..+ .++..-|..+|...+.
T Consensus 615 ~~rt~va~Fle~~g~-------~e~AL~~s~D~d~rFelal~l---grl~iA~~la~e------~~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGM-------KEQALELSTDPDQRFELALKL---GRLDIAFDLAVE------ANSEVKWRQLGDAALS 678 (794)
T ss_pred hhhhhHHhHhhhccc-------hHhhhhcCCChhhhhhhhhhc---CcHHHHHHHHHh------hcchHHHHHHHHHHhh
Q ss_pred ccCHHHHHHHHHHH--------HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837 103 AKDYASAISETGYL--------LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174 (409)
Q Consensus 103 ~~~~~~A~~~~~~a--------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 174 (409)
.+++..|.+++.++ +.....+.+.+..+|......|...-|.-.+-..
T Consensus 679 ~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~------------------------ 734 (794)
T KOG0276|consen 679 AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLS------------------------ 734 (794)
T ss_pred cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHc------------------------
Q ss_pred HHHhhHHhcCCHHHHHHHHHH
Q 043837 175 KSAEDNVSKGKLRVAVEDFKA 195 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~ 195 (409)
|+++++++.+.+
T Consensus 735 ---------g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 735 ---------GDYEECLELLIS 746 (794)
T ss_pred ---------CCHHHHHHHHHh
Done!