Query 043837
Match_columns 409
No_of_seqs 811 out of 4627
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 15:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y4t_A DNAJ homolog subfamily 100.0 2.9E-45 9.8E-50 343.1 38.9 360 1-361 73-450 (450)
2 3ieg_A DNAJ homolog subfamily 100.0 4.6E-33 1.6E-37 251.9 37.3 291 2-293 51-357 (359)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6E-33 2.1E-37 254.5 38.0 272 2-290 13-285 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-33 7.8E-38 257.3 34.5 275 1-292 46-321 (388)
5 3ieg_A DNAJ homolog subfamily 100.0 8.7E-31 3E-35 236.8 38.0 295 1-326 16-338 (359)
6 3hym_B Cell division cycle pro 100.0 1E-31 3.5E-36 240.3 28.8 274 1-287 35-315 (330)
7 2y4t_A DNAJ homolog subfamily 100.0 5.5E-30 1.9E-34 239.4 36.1 277 1-294 39-347 (450)
8 1fch_A Peroxisomal targeting s 100.0 1.1E-30 3.9E-35 237.4 22.6 275 1-293 38-347 (368)
9 2gw1_A Mitochondrial precursor 100.0 1.9E-29 6.6E-34 239.5 31.4 257 1-275 52-405 (514)
10 2h6f_A Protein farnesyltransfe 100.0 2.2E-30 7.4E-35 234.5 22.5 258 14-288 89-365 (382)
11 2xpi_A Anaphase-promoting comp 100.0 5.2E-29 1.8E-33 241.2 31.5 273 1-286 318-594 (597)
12 3hym_B Cell division cycle pro 100.0 4.3E-29 1.5E-33 223.2 28.2 264 11-291 11-285 (330)
13 3fp2_A TPR repeat-containing p 100.0 2.3E-28 8E-33 233.5 33.2 187 71-275 218-411 (537)
14 4eqf_A PEX5-related protein; a 100.0 9.3E-30 3.2E-34 231.3 22.0 266 9-291 48-342 (365)
15 1fch_A Peroxisomal targeting s 100.0 3.6E-29 1.2E-33 227.4 24.4 253 1-271 77-359 (368)
16 2xpi_A Anaphase-promoting comp 100.0 3.3E-28 1.1E-32 235.6 31.8 289 2-326 286-582 (597)
17 4eqf_A PEX5-related protein; a 100.0 3.2E-29 1.1E-33 227.7 23.2 253 1-270 78-355 (365)
18 3cv0_A Peroxisome targeting si 100.0 2.5E-29 8.4E-34 224.5 21.5 256 2-274 35-318 (327)
19 3fp2_A TPR repeat-containing p 100.0 1.3E-28 4.6E-33 235.1 27.0 269 2-283 216-503 (537)
20 3mkr_A Coatomer subunit epsilo 100.0 5.6E-28 1.9E-32 211.8 27.6 259 1-281 12-274 (291)
21 2gw1_A Mitochondrial precursor 100.0 8.9E-29 3E-33 234.9 24.4 273 1-286 202-493 (514)
22 2h6f_A Protein farnesyltransfe 100.0 1.7E-27 5.9E-32 215.5 29.0 247 54-326 96-351 (382)
23 2pl2_A Hypothetical conserved 100.0 2.5E-28 8.5E-33 204.9 21.4 196 57-270 7-213 (217)
24 3uq3_A Heat shock protein STI1 100.0 9E-28 3.1E-32 206.8 23.1 241 20-285 3-256 (258)
25 3u4t_A TPR repeat-containing p 100.0 9.8E-28 3.4E-32 208.6 22.3 247 23-287 4-266 (272)
26 4g1t_A Interferon-induced prot 100.0 4.3E-26 1.5E-30 214.4 32.5 261 1-278 64-370 (472)
27 3u4t_A TPR repeat-containing p 100.0 3.2E-27 1.1E-31 205.3 21.1 242 1-255 16-268 (272)
28 3cv0_A Peroxisome targeting si 100.0 1.4E-26 4.7E-31 206.6 24.9 254 21-291 20-301 (327)
29 4g1t_A Interferon-induced prot 100.0 7.9E-27 2.7E-31 219.4 22.1 268 2-283 152-471 (472)
30 2pl2_A Hypothetical conserved 100.0 2E-26 7E-31 193.2 22.1 197 87-291 2-200 (217)
31 3vtx_A MAMA; tetratricopeptide 99.9 3.7E-26 1.3E-30 186.6 22.4 174 88-277 3-176 (184)
32 3uq3_A Heat shock protein STI1 99.9 1.7E-25 5.7E-30 192.6 26.4 226 1-252 18-257 (258)
33 2q7f_A YRRB protein; TPR, prot 99.9 6.6E-26 2.3E-30 193.4 21.8 216 54-286 22-237 (243)
34 2pzi_A Probable serine/threoni 99.9 2E-26 6.8E-31 225.3 20.6 243 66-326 402-662 (681)
35 3sf4_A G-protein-signaling mod 99.9 5.5E-25 1.9E-29 202.3 27.7 280 1-290 22-361 (406)
36 2ho1_A Type 4 fimbrial biogene 99.9 2.6E-24 8.9E-29 184.7 29.1 211 55-282 37-249 (252)
37 4a1s_A PINS, partner of inscut 99.9 7.2E-25 2.5E-29 202.2 26.2 266 1-276 61-377 (411)
38 4i17_A Hypothetical protein; T 99.9 8.2E-25 2.8E-29 185.0 23.1 187 89-287 6-225 (228)
39 3ro2_A PINS homolog, G-protein 99.9 1.2E-24 4.1E-29 194.4 24.6 265 1-275 18-336 (338)
40 2vq2_A PILW, putative fimbrial 99.9 1E-23 3.6E-28 177.4 28.8 210 56-282 9-222 (225)
41 1ouv_A Conserved hypothetical 99.9 1.6E-23 5.4E-28 182.2 28.8 232 18-277 2-257 (273)
42 3mkr_A Coatomer subunit epsilo 99.9 7.7E-24 2.6E-28 185.5 26.8 276 29-346 6-288 (291)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.2E-25 1.8E-29 191.5 18.4 202 58-278 46-251 (275)
44 3vtx_A MAMA; tetratricopeptide 99.9 6.4E-24 2.2E-28 173.2 22.7 171 56-243 6-176 (184)
45 4abn_A Tetratricopeptide repea 99.9 4.6E-24 1.6E-28 200.0 24.7 204 55-268 102-318 (474)
46 2ond_A Cleavage stimulation fa 99.9 1.9E-23 6.6E-28 185.0 26.8 231 5-277 33-276 (308)
47 4abn_A Tetratricopeptide repea 99.9 2.1E-24 7.3E-29 202.3 21.4 212 71-291 84-307 (474)
48 4gyw_A UDP-N-acetylglucosamine 99.9 7.8E-25 2.7E-29 213.0 19.0 174 85-274 4-177 (723)
49 1xnf_A Lipoprotein NLPI; TPR, 99.9 6E-24 2E-28 184.8 21.5 246 2-265 19-269 (275)
50 2q7f_A YRRB protein; TPR, prot 99.9 4.8E-24 1.6E-28 181.8 20.5 219 21-256 22-241 (243)
51 3qky_A Outer membrane assembly 99.9 4.5E-23 1.5E-27 178.1 23.6 202 83-286 8-239 (261)
52 2ho1_A Type 4 fimbrial biogene 99.9 8.4E-23 2.9E-27 175.3 24.2 216 16-248 30-249 (252)
53 2vq2_A PILW, putative fimbrial 99.9 4E-22 1.4E-26 167.6 25.7 215 17-248 3-222 (225)
54 3sf4_A G-protein-signaling mod 99.9 1.8E-22 6.1E-27 185.5 25.1 263 19-291 6-322 (406)
55 4i17_A Hypothetical protein; T 99.9 7.3E-22 2.5E-26 166.8 25.8 213 18-254 3-226 (228)
56 4a1s_A PINS, partner of inscut 99.9 9.9E-23 3.4E-27 187.9 21.5 246 20-275 46-336 (411)
57 3dra_A Protein farnesyltransfe 99.9 2.2E-21 7.4E-26 168.9 26.4 233 4-284 49-301 (306)
58 3nf1_A KLC 1, kinesin light ch 99.9 7.5E-23 2.6E-27 181.0 17.6 247 18-274 23-310 (311)
59 4gyw_A UDP-N-acetylglucosamine 99.9 2.3E-22 7.8E-27 195.7 21.8 160 66-242 20-179 (723)
60 1ouv_A Conserved hypothetical 99.9 7.9E-21 2.7E-25 165.1 28.8 218 1-246 19-260 (273)
61 3qky_A Outer membrane assembly 99.9 4.8E-22 1.7E-26 171.6 19.8 205 56-262 16-252 (261)
62 3urz_A Uncharacterized protein 99.9 7.9E-22 2.7E-26 164.0 19.9 179 89-285 3-199 (208)
63 3ulq_A Response regulator aspa 99.9 1.3E-21 4.4E-26 178.8 23.1 235 25-274 106-371 (383)
64 3ro2_A PINS homolog, G-protein 99.9 9E-22 3.1E-26 175.7 21.7 244 22-275 5-296 (338)
65 1qqe_A Vesicular transport pro 99.9 8.9E-22 3E-26 172.8 20.2 251 6-284 3-282 (292)
66 2ond_A Cleavage stimulation fa 99.9 1.1E-20 3.7E-25 167.2 26.9 225 72-330 33-277 (308)
67 2ooe_A Cleavage stimulation fa 99.9 3.6E-20 1.2E-24 176.5 31.9 274 1-291 25-440 (530)
68 2xm6_A Protein corresponding t 99.9 4.5E-19 1.5E-23 167.3 39.0 241 2-272 57-326 (490)
69 2xm6_A Protein corresponding t 99.9 7.4E-19 2.5E-23 165.8 39.7 223 20-270 37-287 (490)
70 2pzi_A Probable serine/threoni 99.9 8.2E-22 2.8E-26 192.7 19.1 185 84-288 388-580 (681)
71 3as5_A MAMA; tetratricopeptide 99.9 3.5E-21 1.2E-25 156.6 19.9 173 89-277 7-179 (186)
72 3urz_A Uncharacterized protein 99.9 2.1E-21 7.4E-26 161.4 18.5 171 55-241 4-190 (208)
73 3ulq_A Response regulator aspa 99.9 3.3E-20 1.1E-24 169.4 28.1 275 2-291 26-354 (383)
74 2yhc_A BAMD, UPF0169 lipoprote 99.9 2.6E-20 9E-25 156.9 23.1 188 55-276 4-218 (225)
75 1hz4_A MALT regulatory protein 99.9 2.7E-19 9.3E-24 162.7 31.0 265 1-273 27-324 (373)
76 4ga2_A E3 SUMO-protein ligase 99.9 4E-22 1.4E-26 156.5 10.0 146 96-257 3-149 (150)
77 1qqe_A Vesicular transport pro 99.9 4.1E-20 1.4E-24 162.1 22.1 214 29-252 44-284 (292)
78 3dra_A Protein farnesyltransfe 99.9 2E-19 6.7E-24 156.5 25.0 234 59-326 36-291 (306)
79 3nf1_A KLC 1, kinesin light ch 99.9 3.4E-21 1.2E-25 170.3 13.6 229 1-240 40-310 (311)
80 3edt_B KLC 2, kinesin light ch 99.9 2.5E-20 8.6E-25 162.2 17.9 236 2-272 15-282 (283)
81 3e4b_A ALGK; tetratricopeptide 99.9 1.9E-19 6.6E-24 167.6 24.8 259 3-287 89-365 (452)
82 3q15_A PSP28, response regulat 99.8 1.8E-19 6.3E-24 164.2 23.3 234 24-272 103-366 (378)
83 3as5_A MAMA; tetratricopeptide 99.8 1.2E-19 4.1E-24 147.4 19.9 171 55-242 8-178 (186)
84 4ga2_A E3 SUMO-protein ligase 99.8 3.5E-21 1.2E-25 151.1 9.1 143 129-287 2-145 (150)
85 3dss_A Geranylgeranyl transfer 99.8 1.2E-17 4.1E-22 146.0 31.2 208 59-283 33-279 (331)
86 2ooe_A Cleavage stimulation fa 99.8 8.6E-19 3E-23 167.0 24.6 229 5-275 255-496 (530)
87 3q15_A PSP28, response regulat 99.8 2.2E-18 7.5E-23 157.0 25.7 220 56-290 102-350 (378)
88 3dss_A Geranylgeranyl transfer 99.8 1.2E-17 4.1E-22 146.0 28.8 249 5-284 47-317 (331)
89 2r5s_A Uncharacterized protein 99.8 4.9E-20 1.7E-24 148.9 12.7 169 86-270 2-172 (176)
90 3e4b_A ALGK; tetratricopeptide 99.8 1.2E-18 4.2E-23 162.1 23.8 255 2-287 17-329 (452)
91 3qou_A Protein YBBN; thioredox 99.8 3.7E-19 1.3E-23 155.5 18.8 173 82-270 109-283 (287)
92 4gco_A Protein STI-1; structur 99.8 3E-19 1E-23 135.4 14.5 121 149-285 4-124 (126)
93 4gco_A Protein STI-1; structur 99.8 2.5E-19 8.4E-24 135.9 12.8 108 83-202 6-113 (126)
94 3q7a_A Farnesyltransferase alp 99.8 1.3E-17 4.6E-22 146.2 23.3 233 3-284 69-345 (349)
95 2vsy_A XCC0866; transferase, g 99.8 2E-18 6.7E-23 165.9 18.2 164 69-249 3-169 (568)
96 2r5s_A Uncharacterized protein 99.8 1.3E-18 4.3E-23 140.6 14.1 165 56-236 7-172 (176)
97 3gyz_A Chaperone protein IPGC; 99.8 3.7E-19 1.3E-23 138.8 9.8 116 145-276 23-138 (151)
98 1hz4_A MALT regulatory protein 99.8 1.5E-16 5.2E-21 144.5 28.7 243 22-274 14-285 (373)
99 2vsy_A XCC0866; transferase, g 99.8 2.6E-18 8.8E-23 165.1 16.9 158 103-276 2-162 (568)
100 4f3v_A ESX-1 secretion system 99.8 2.5E-18 8.4E-23 146.1 14.7 212 54-283 6-248 (282)
101 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.7E-17 6E-22 139.5 19.7 174 21-204 3-218 (225)
102 2ifu_A Gamma-SNAP; membrane fu 99.8 3.6E-18 1.2E-22 150.9 15.8 206 2-241 5-227 (307)
103 3gyz_A Chaperone protein IPGC; 99.8 7.4E-19 2.5E-23 137.2 9.8 121 106-242 18-138 (151)
104 3q7a_A Farnesyltransferase alp 99.8 2.3E-16 7.7E-21 138.5 25.5 177 65-258 63-258 (349)
105 1xi4_A Clathrin heavy chain; a 99.8 2.9E-16 9.8E-21 156.6 28.9 229 20-293 1103-1331(1630)
106 3qou_A Protein YBBN; thioredox 99.8 2.1E-17 7.2E-22 144.3 18.5 168 54-236 116-283 (287)
107 3rjv_A Putative SEL1 repeat pr 99.8 7.3E-17 2.5E-21 134.3 20.8 192 72-284 3-208 (212)
108 2vgx_A Chaperone SYCD; alterna 99.8 3E-18 1E-22 133.9 11.2 131 145-291 8-138 (148)
109 3edt_B KLC 2, kinesin light ch 99.8 1.3E-17 4.4E-22 144.9 16.5 211 67-291 13-267 (283)
110 2ifu_A Gamma-SNAP; membrane fu 99.8 5.7E-17 1.9E-21 143.1 20.1 184 68-277 29-229 (307)
111 3mv2_B Coatomer subunit epsilo 99.8 1.8E-16 6E-21 136.4 21.2 250 1-281 26-292 (310)
112 1b89_A Protein (clathrin heavy 99.7 2E-18 6.7E-23 154.9 9.0 243 1-293 16-258 (449)
113 1dce_A Protein (RAB geranylger 99.7 1.5E-17 5.3E-22 158.0 14.0 195 64-275 37-271 (567)
114 1p5q_A FKBP52, FK506-binding p 99.7 2.6E-18 8.9E-23 153.5 8.1 157 102-271 125-294 (336)
115 2xcb_A PCRH, regulatory protei 99.7 1.9E-17 6.6E-22 128.5 11.3 131 145-291 5-135 (142)
116 2c2l_A CHIP, carboxy terminus 99.7 1.5E-17 5.1E-22 144.8 11.2 194 56-271 5-199 (281)
117 4f3v_A ESX-1 secretion system 99.7 6.3E-17 2.2E-21 137.4 14.4 201 2-249 20-248 (282)
118 2c2l_A CHIP, carboxy terminus 99.7 7.6E-17 2.6E-21 140.3 15.1 179 87-287 1-180 (281)
119 2qfc_A PLCR protein; TPR, HTH, 99.7 6.7E-16 2.3E-20 135.3 20.9 177 87-272 72-267 (293)
120 2vgx_A Chaperone SYCD; alterna 99.7 1E-17 3.5E-22 130.8 8.1 109 82-202 13-121 (148)
121 2fo7_A Synthetic consensus TPR 99.7 6.6E-16 2.3E-20 118.0 18.0 133 126-274 3-135 (136)
122 1p5q_A FKBP52, FK506-binding p 99.7 2.2E-17 7.7E-22 147.4 10.3 153 68-237 126-294 (336)
123 2hr2_A Hypothetical protein; a 99.7 4E-17 1.4E-21 125.6 10.1 126 166-291 7-151 (159)
124 2xcb_A PCRH, regulatory protei 99.7 5.5E-17 1.9E-21 125.9 10.2 119 112-246 6-124 (142)
125 2fo7_A Synthetic consensus TPR 99.7 9.4E-16 3.2E-20 117.2 17.0 134 91-240 2-135 (136)
126 3rjv_A Putative SEL1 repeat pr 99.7 2.2E-15 7.5E-20 125.3 20.1 189 5-249 3-207 (212)
127 3upv_A Heat shock protein STI1 99.7 6E-16 2.1E-20 117.3 14.1 113 163-288 6-124 (126)
128 1hh8_A P67PHOX, NCF-2, neutrop 99.7 9.8E-16 3.4E-20 127.5 16.7 135 92-241 8-154 (213)
129 1xi4_A Clathrin heavy chain; a 99.7 1.2E-14 4.1E-19 145.2 26.5 233 1-265 1118-1378(1630)
130 2fbn_A 70 kDa peptidylprolyl i 99.7 6.3E-17 2.1E-21 133.2 8.8 171 90-294 4-174 (198)
131 3u3w_A Transcriptional activat 99.7 2.4E-15 8.2E-20 131.8 19.4 171 93-272 78-267 (293)
132 2e2e_A Formate-dependent nitri 99.7 3.4E-16 1.2E-20 126.3 12.8 134 135-284 21-157 (177)
133 1b89_A Protein (clathrin heavy 99.7 6.8E-16 2.3E-20 138.6 14.9 228 2-269 75-309 (449)
134 2qfc_A PLCR protein; TPR, HTH, 99.7 1.2E-14 4.2E-19 127.2 22.8 175 53-237 73-266 (293)
135 3upv_A Heat shock protein STI1 99.7 1.8E-15 6.1E-20 114.7 14.8 69 91-159 5-73 (126)
136 3rkv_A Putative peptidylprolyl 99.7 1.5E-15 5E-20 120.7 14.3 119 175-293 16-149 (162)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.7 8.4E-15 2.9E-19 121.8 19.2 137 54-203 5-154 (213)
138 4gcn_A Protein STI-1; structur 99.7 3.3E-15 1.1E-19 113.2 14.6 108 163-284 10-124 (127)
139 2e2e_A Formate-dependent nitri 99.7 2.3E-15 7.8E-20 121.4 14.5 127 65-204 20-149 (177)
140 1dce_A Protein (RAB geranylger 99.7 6E-15 2E-19 140.2 19.6 173 102-290 40-240 (567)
141 1a17_A Serine/threonine protei 99.7 6.4E-15 2.2E-19 117.1 16.8 129 127-271 16-146 (166)
142 2fbn_A 70 kDa peptidylprolyl i 99.6 1.2E-15 4.3E-20 125.4 12.7 149 22-174 4-169 (198)
143 3sz7_A HSC70 cochaperone (SGT) 99.6 2.3E-15 7.7E-20 119.8 13.7 112 163-287 13-126 (164)
144 3u3w_A Transcriptional activat 99.6 1.4E-14 4.7E-19 127.0 20.0 172 56-237 76-266 (293)
145 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.6E-16 5.6E-21 147.9 7.6 148 102-262 246-405 (457)
146 1a17_A Serine/threonine protei 99.6 8.8E-15 3E-19 116.3 16.4 131 90-236 13-145 (166)
147 1bq0_A DNAJ, HSP40; chaperone, 99.6 8.5E-17 2.9E-21 115.5 4.0 68 295-363 3-70 (103)
148 2hr2_A Hypothetical protein; a 99.6 1.9E-15 6.6E-20 116.3 11.1 110 49-159 5-137 (159)
149 2lni_A Stress-induced-phosphop 99.6 7.2E-15 2.5E-19 112.1 14.3 72 88-159 14-85 (133)
150 3sz7_A HSC70 cochaperone (SGT) 99.6 5.1E-15 1.7E-19 117.8 13.5 71 89-159 10-80 (164)
151 2lni_A Stress-induced-phosphop 99.6 8.7E-15 3E-19 111.6 14.3 122 120-257 12-133 (133)
152 2vyi_A SGTA protein; chaperone 99.6 7.9E-15 2.7E-19 111.4 14.0 123 86-224 8-130 (131)
153 4gcn_A Protein STI-1; structur 99.6 4.3E-15 1.5E-19 112.6 11.7 106 88-202 6-115 (127)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 7.9E-16 2.7E-20 143.3 9.2 145 69-230 248-407 (457)
155 3q49_B STIP1 homology and U bo 99.6 1.3E-14 4.5E-19 111.4 14.6 122 153-290 4-130 (137)
156 2vyi_A SGTA protein; chaperone 99.6 6.7E-15 2.3E-19 111.8 11.8 123 120-258 8-130 (131)
157 2o37_A Protein SIS1; HSP40, J- 99.6 9.3E-16 3.2E-20 107.5 6.3 66 293-362 6-71 (92)
158 1hxi_A PEX5, peroxisome target 99.6 9.9E-15 3.4E-19 109.5 12.1 101 58-159 20-120 (121)
159 3rkv_A Putative peptidylprolyl 99.6 2.4E-14 8.2E-19 113.6 14.9 116 55-174 11-145 (162)
160 2dmx_A DNAJ homolog subfamily 99.6 1.8E-15 6.1E-20 106.3 7.2 68 294-361 8-75 (92)
161 2yua_A Williams-beuren syndrom 99.6 2.1E-15 7.3E-20 107.2 7.5 71 293-364 15-85 (99)
162 3gw4_A Uncharacterized protein 99.6 2.7E-14 9.2E-19 117.6 15.1 165 101-274 3-179 (203)
163 3gw4_A Uncharacterized protein 99.6 6E-14 2.1E-18 115.5 17.1 165 65-239 2-178 (203)
164 1hxi_A PEX5, peroxisome target 99.6 1.3E-14 4.5E-19 108.8 11.7 101 164-277 20-120 (121)
165 3q49_B STIP1 homology and U bo 99.6 3E-14 1E-18 109.4 14.1 104 86-201 5-108 (137)
166 1na0_A Designed protein CTPR3; 99.6 1E-13 3.5E-18 104.2 15.5 70 90-159 9-78 (125)
167 1na0_A Designed protein CTPR3; 99.6 1.4E-13 4.7E-18 103.5 16.1 121 120-256 4-125 (125)
168 2ej7_A HCG3 gene; HCG3 protein 99.6 7.3E-15 2.5E-19 100.9 8.0 69 294-362 8-76 (82)
169 1elw_A TPR1-domain of HOP; HOP 99.6 2.7E-13 9.3E-18 100.7 16.9 113 55-171 4-116 (118)
170 2ctr_A DNAJ homolog subfamily 99.6 8.3E-15 2.8E-19 101.8 7.4 67 294-362 6-72 (88)
171 2lgw_A DNAJ homolog subfamily 99.6 3E-15 1E-19 105.9 4.9 67 295-361 2-68 (99)
172 1elw_A TPR1-domain of HOP; HOP 99.5 2.6E-13 9E-18 100.8 15.5 71 210-280 40-110 (118)
173 2dba_A Smooth muscle cell asso 99.5 2.5E-13 8.6E-18 105.5 15.9 121 153-286 23-143 (148)
174 2dba_A Smooth muscle cell asso 99.5 2.6E-13 9E-18 105.4 16.0 122 119-253 23-144 (148)
175 3mv2_B Coatomer subunit epsilo 99.5 5.8E-13 2E-17 114.6 19.4 267 30-346 21-306 (310)
176 2if4_A ATFKBP42; FKBP-like, al 99.5 2.3E-14 8E-19 127.9 11.0 139 54-204 178-333 (338)
177 2xev_A YBGF; tetratricopeptide 99.5 3.1E-13 1E-17 102.5 15.7 111 57-168 4-120 (129)
178 1zu2_A Mitochondrial import re 99.5 4.3E-14 1.5E-18 108.5 10.8 100 184-287 16-136 (158)
179 2if4_A ATFKBP42; FKBP-like, al 99.5 3.2E-15 1.1E-19 133.6 4.5 133 121-286 176-308 (338)
180 2ctp_A DNAJ homolog subfamily 99.5 2.5E-14 8.5E-19 97.1 7.9 68 294-363 6-73 (78)
181 1wao_1 Serine/threonine protei 99.5 1.9E-14 6.6E-19 134.4 9.9 135 56-203 7-154 (477)
182 2xev_A YBGF; tetratricopeptide 99.5 4E-13 1.4E-17 101.8 15.5 107 180-287 12-121 (129)
183 1hdj_A Human HSP40, HDJ-1; mol 99.5 2.1E-14 7.2E-19 97.2 7.0 67 295-363 3-69 (77)
184 4b4t_Q 26S proteasome regulato 99.5 8.2E-13 2.8E-17 122.3 20.3 206 57-272 6-246 (434)
185 1elr_A TPR2A-domain of HOP; HO 99.5 3.3E-13 1.1E-17 102.3 14.7 116 163-292 6-128 (131)
186 1wao_1 Serine/threonine protei 99.5 3.1E-15 1.1E-19 139.8 3.9 136 90-241 6-154 (477)
187 1wjz_A 1700030A21RIK protein; 99.5 1.1E-14 3.6E-19 103.1 5.6 71 293-363 14-89 (94)
188 4e6h_A MRNA 3'-END-processing 99.5 3.7E-12 1.3E-16 122.7 25.0 226 7-281 328-580 (679)
189 2och_A Hypothetical protein DN 99.5 2.8E-14 9.4E-19 95.4 6.8 66 293-362 6-71 (73)
190 2dn9_A DNAJ homolog subfamily 99.5 2.1E-14 7.3E-19 97.8 6.1 68 294-362 6-73 (79)
191 4e6h_A MRNA 3'-END-processing 99.5 4.4E-11 1.5E-15 115.3 30.8 221 73-323 327-571 (679)
192 1ihg_A Cyclophilin 40; ppiase 99.5 4.5E-13 1.5E-17 120.8 15.3 115 56-174 224-354 (370)
193 3k9i_A BH0479 protein; putativ 99.5 7.2E-14 2.5E-18 104.2 8.5 99 184-283 4-102 (117)
194 1zu2_A Mitochondrial import re 99.5 1.7E-13 5.9E-18 105.1 10.3 90 69-159 16-126 (158)
195 2cug_A Mkiaa0962 protein; DNAJ 99.5 3.4E-14 1.1E-18 98.7 5.6 67 294-362 16-82 (88)
196 2kck_A TPR repeat; tetratricop 99.5 1.6E-13 5.6E-18 100.9 9.4 107 154-276 2-111 (112)
197 1ihg_A Cyclophilin 40; ppiase 99.5 4.9E-13 1.7E-17 120.6 14.1 137 124-294 223-359 (370)
198 1elr_A TPR2A-domain of HOP; HO 99.5 4.1E-13 1.4E-17 101.8 11.6 118 126-256 6-126 (131)
199 3lz8_A Putative chaperone DNAJ 99.5 4.1E-15 1.4E-19 129.2 0.0 67 293-361 26-92 (329)
200 4b4t_Q 26S proteasome regulato 99.5 1.7E-11 5.8E-16 113.4 23.6 188 2-199 18-245 (434)
201 3k9i_A BH0479 protein; putativ 99.5 1.4E-13 4.7E-18 102.6 7.5 91 68-159 3-96 (117)
202 2ctq_A DNAJ homolog subfamily 99.4 7.8E-14 2.7E-18 101.5 5.7 69 293-362 18-86 (112)
203 2ctw_A DNAJ homolog subfamily 99.4 2E-13 6.7E-18 98.8 7.4 69 294-363 16-84 (109)
204 3ro3_A PINS homolog, G-protein 99.4 9.5E-13 3.3E-17 103.7 12.2 140 126-274 11-161 (164)
205 2kck_A TPR repeat; tetratricop 99.4 2.8E-12 9.4E-17 94.2 12.1 97 61-158 12-111 (112)
206 3ro3_A PINS homolog, G-protein 99.4 2E-12 6.8E-17 101.8 11.1 141 90-239 9-160 (164)
207 2qsa_A DNAJ homolog DNJ-2; J-d 99.4 2E-13 6.7E-18 99.1 4.4 70 293-362 13-85 (109)
208 1iur_A KIAA0730 protein; DNAJ 99.4 3.8E-13 1.3E-17 92.2 4.6 62 294-355 15-76 (88)
209 2ys8_A RAB-related GTP-binding 99.4 6.4E-13 2.2E-17 92.4 4.9 63 293-357 25-87 (90)
210 1gh6_A Large T antigen; tumor 99.3 2.7E-13 9.2E-18 97.9 1.9 63 294-361 7-71 (114)
211 2l6l_A DNAJ homolog subfamily 99.3 2.2E-12 7.6E-17 100.1 7.1 71 292-362 7-82 (155)
212 2kat_A Uncharacterized protein 99.3 2.5E-11 8.7E-16 89.8 12.7 84 188-275 3-86 (115)
213 1faf_A Large T antigen; J doma 99.3 2.5E-12 8.6E-17 86.7 4.9 62 294-360 10-73 (79)
214 2kat_A Uncharacterized protein 99.3 5.5E-11 1.9E-15 88.0 12.8 86 72-158 2-87 (115)
215 2pf4_E Small T antigen; PP2A, 99.3 5.4E-13 1.9E-17 103.1 1.6 67 292-363 8-76 (174)
216 3apq_A DNAJ homolog subfamily 99.3 4E-12 1.4E-16 105.2 5.9 67 295-362 2-68 (210)
217 2l6j_A TPR repeat-containing p 99.3 5.6E-12 1.9E-16 92.6 5.9 83 89-174 3-91 (111)
218 3n71_A Histone lysine methyltr 99.3 2E-10 6.7E-15 106.7 17.0 134 129-272 314-465 (490)
219 2l6j_A TPR repeat-containing p 99.2 9.6E-12 3.3E-16 91.3 6.4 94 55-149 4-103 (111)
220 2qwo_B Putative tyrosine-prote 99.2 1.1E-12 3.8E-17 90.0 1.1 73 277-351 17-91 (92)
221 2uy1_A Cleavage stimulation fa 99.2 7.4E-08 2.5E-12 90.1 34.1 237 73-350 197-450 (493)
222 3hho_A CO-chaperone protein HS 99.2 6.6E-12 2.3E-16 98.7 5.1 67 294-360 3-75 (174)
223 1fpo_A HSC20, chaperone protei 99.2 9.2E-12 3.2E-16 97.5 5.4 66 296-361 2-73 (171)
224 1n4c_A Auxilin; four helix bun 99.2 4.5E-12 1.5E-16 98.6 3.5 64 295-358 117-182 (182)
225 1na3_A Designed protein CTPR2; 99.2 1.8E-10 6.1E-15 81.0 11.4 83 88-173 7-89 (91)
226 3bvo_A CO-chaperone protein HS 99.2 1.3E-11 4.5E-16 99.5 4.9 67 294-360 42-114 (207)
227 1na3_A Designed protein CTPR2; 99.2 3.5E-10 1.2E-14 79.5 11.8 82 207-288 8-89 (91)
228 3n71_A Histone lysine methyltr 99.2 4E-10 1.4E-14 104.6 15.2 134 94-237 313-464 (490)
229 3ma5_A Tetratricopeptide repea 99.2 1.1E-10 3.6E-15 84.0 7.9 74 85-158 2-75 (100)
230 3ag7_A Putative uncharacterize 99.1 6.5E-12 2.2E-16 89.5 1.2 59 294-353 40-104 (106)
231 3ma5_A Tetratricopeptide repea 99.1 1.5E-10 5.2E-15 83.2 8.3 70 207-276 6-75 (100)
232 3u64_A Protein TP_0956; tetrat 99.1 8.4E-09 2.9E-13 86.6 18.8 119 152-275 146-273 (301)
233 2kc7_A BFR218_protein; tetratr 99.1 9.8E-11 3.4E-15 84.0 5.9 90 59-157 4-94 (99)
234 3ly7_A Transcriptional activat 99.1 5.6E-09 1.9E-13 91.5 17.3 152 85-277 189-345 (372)
235 2uy1_A Cleavage stimulation fa 99.1 1.4E-07 4.7E-12 88.3 28.0 264 2-287 28-365 (493)
236 3u64_A Protein TP_0956; tetrat 99.1 7.1E-09 2.4E-13 87.0 17.1 186 6-203 50-273 (301)
237 2kc7_A BFR218_protein; tetratr 99.1 1.8E-10 6E-15 82.7 6.5 79 184-274 14-93 (99)
238 1pc2_A Mitochondria fission pr 99.1 4.1E-09 1.4E-13 79.9 13.0 102 184-289 12-118 (152)
239 3uo3_A J-type CO-chaperone JAC 99.0 4E-11 1.4E-15 94.5 1.9 66 291-360 7-79 (181)
240 1klx_A Cysteine rich protein B 99.0 6E-09 2E-13 79.6 13.7 109 105-237 10-126 (138)
241 2guz_A Mitochondrial import in 99.0 8.1E-11 2.8E-15 77.6 2.7 56 295-355 14-70 (71)
242 3ly7_A Transcriptional activat 99.0 1.6E-08 5.4E-13 88.7 16.1 149 53-243 194-345 (372)
243 3bee_A Putative YFRE protein; 99.0 9.6E-09 3.3E-13 72.1 11.4 74 86-159 2-78 (93)
244 3qww_A SET and MYND domain-con 98.9 3.1E-08 1E-12 90.5 16.5 111 172-283 300-428 (433)
245 1klx_A Cysteine rich protein B 98.9 2.2E-08 7.6E-13 76.4 13.1 112 69-201 9-128 (138)
246 3bee_A Putative YFRE protein; 98.9 1.4E-08 4.8E-13 71.2 10.9 71 207-277 5-78 (93)
247 1pc2_A Mitochondria fission pr 98.9 3.1E-08 1.1E-12 75.1 11.4 86 73-159 16-106 (152)
248 3qwp_A SET and MYND domain-con 98.8 8.5E-08 2.9E-12 87.7 15.0 109 175-284 292-418 (429)
249 3qwp_A SET and MYND domain-con 98.8 2.1E-07 7.2E-12 85.1 16.6 114 131-254 294-425 (429)
250 2v5f_A Prolyl 4-hydroxylase su 98.8 1E-07 3.5E-12 68.7 11.5 83 207-289 4-93 (104)
251 3apo_A DNAJ homolog subfamily 98.8 1.1E-09 3.6E-14 109.0 0.8 70 293-363 19-88 (780)
252 3qww_A SET and MYND domain-con 98.7 3E-07 1E-11 84.0 15.1 102 134-245 308-424 (433)
253 1nzn_A CGI-135 protein, fissio 98.6 5.8E-07 2E-11 65.5 12.0 103 184-290 15-122 (126)
254 2v5f_A Prolyl 4-hydroxylase su 98.6 4.9E-07 1.7E-11 65.0 11.5 77 89-168 4-87 (104)
255 1nzn_A CGI-135 protein, fissio 98.3 8.1E-06 2.8E-10 59.5 10.7 83 76-159 22-109 (126)
256 4g26_A Pentatricopeptide repea 98.3 0.0002 6.8E-09 66.9 22.0 167 92-277 28-212 (501)
257 4g26_A Pentatricopeptide repea 98.2 0.00021 7.2E-09 66.8 21.5 154 65-236 36-203 (501)
258 3o48_A Mitochondria fission 1 98.2 7.5E-05 2.6E-09 54.5 13.8 85 207-291 39-127 (134)
259 1y8m_A FIS1; mitochondria, unk 98.1 4.3E-05 1.5E-09 56.5 11.6 84 207-290 38-125 (144)
260 4h7y_A Dual specificity protei 98.0 0.00024 8.1E-09 52.9 13.6 115 152-279 7-131 (161)
261 4h7y_A Dual specificity protei 97.9 0.00028 9.7E-09 52.5 11.5 112 119-244 8-130 (161)
262 1y8m_A FIS1; mitochondria, unk 97.8 0.0014 4.9E-08 48.5 14.0 73 87-159 36-112 (144)
263 3o48_A Mitochondria fission 1 97.8 0.00062 2.1E-08 49.7 11.8 72 88-159 38-113 (134)
264 2guz_B Mitochondrial import in 97.8 4E-05 1.4E-09 48.6 4.7 51 295-350 4-57 (65)
265 3ffl_A Anaphase-promoting comp 97.7 0.00026 8.8E-09 54.0 9.9 92 58-150 23-148 (167)
266 3ffl_A Anaphase-promoting comp 97.7 0.00028 9.5E-09 53.8 10.0 112 173-285 23-164 (167)
267 3txn_A 26S proteasome regulato 97.4 0.033 1.1E-06 49.7 20.2 24 23-46 20-43 (394)
268 3mkq_A Coatomer beta'-subunit; 97.3 0.016 5.3E-07 57.7 18.8 70 64-150 638-707 (814)
269 4gns_B Protein CSD3, chitin bi 97.2 0.0095 3.2E-07 57.8 16.1 125 103-234 261-397 (754)
270 1zbp_A Hypothetical protein VP 97.1 0.0098 3.4E-07 49.3 12.9 60 100-159 7-66 (273)
271 3kae_A CDC27, possible protein 97.1 0.062 2.1E-06 40.9 20.5 95 59-159 37-149 (242)
272 4gns_B Protein CSD3, chitin bi 97.0 0.023 7.9E-07 55.1 15.9 61 90-150 337-397 (754)
273 3txn_A 26S proteasome regulato 97.0 0.031 1.1E-06 49.9 15.4 176 91-272 20-211 (394)
274 3kae_A CDC27, possible protein 96.9 0.081 2.8E-06 40.2 21.4 189 65-274 12-240 (242)
275 3mkq_A Coatomer beta'-subunit; 96.9 0.18 6.1E-06 50.0 22.7 97 66-196 610-707 (814)
276 4b4t_P 26S proteasome regulato 96.5 0.48 1.6E-05 43.3 22.4 261 3-273 31-326 (445)
277 1zbp_A Hypothetical protein VP 96.4 0.042 1.4E-06 45.6 11.1 63 62-125 4-66 (273)
278 2ff4_A Probable regulatory pro 96.4 0.091 3.1E-06 47.1 14.4 96 175-270 120-233 (388)
279 4b4t_S RPN3, 26S proteasome re 96.1 0.33 1.1E-05 44.6 16.6 198 64-277 145-379 (523)
280 2ff4_A Probable regulatory pro 95.8 0.2 6.9E-06 44.9 13.7 61 92-152 173-233 (388)
281 4fhn_B Nucleoporin NUP120; pro 95.5 2.5 8.5E-05 43.8 22.5 189 64-271 821-1050(1139)
282 1ya0_A SMG-7 transcript varian 95.4 0.13 4.3E-06 47.6 11.1 79 92-173 154-232 (497)
283 4b4t_R RPN7, 26S proteasome re 95.4 0.082 2.8E-06 48.2 9.8 106 123-237 130-237 (429)
284 4fhn_B Nucleoporin NUP120; pro 95.3 0.93 3.2E-05 46.9 18.6 151 95-259 817-988 (1139)
285 1ya0_A SMG-7 transcript varian 95.2 0.13 4.6E-06 47.4 10.8 72 177-252 159-230 (497)
286 3mkq_B Coatomer subunit alpha; 95.2 0.82 2.8E-05 35.4 13.3 43 68-116 18-60 (177)
287 3mkq_B Coatomer subunit alpha; 95.1 0.85 2.9E-05 35.3 13.9 54 89-150 7-60 (177)
288 4b4t_P 26S proteasome regulato 95.1 1.9 6.5E-05 39.3 21.9 104 125-237 138-247 (445)
289 1qsa_A Protein (soluble lytic 94.9 2.7 9.4E-05 40.0 22.2 50 66-120 83-132 (618)
290 4b4t_R RPN7, 26S proteasome re 94.7 0.23 7.7E-06 45.2 10.6 102 163-274 133-240 (429)
291 1qsa_A Protein (soluble lytic 94.4 3.6 0.00012 39.2 25.6 127 130-270 220-347 (618)
292 4b4t_S RPN3, 26S proteasome re 94.2 0.17 5.8E-06 46.5 8.5 134 133-275 145-303 (523)
293 2pk2_A Cyclin-T1, protein TAT; 93.5 0.055 1.9E-06 47.8 4.0 26 296-323 220-245 (358)
294 2pk2_A Cyclin-T1, protein TAT; 92.7 0.046 1.6E-06 48.2 2.2 19 332-350 231-249 (358)
295 3spa_A Mtrpol, DNA-directed RN 92.6 1.9 6.3E-05 43.4 13.3 88 64-152 136-229 (1134)
296 3lpz_A GET4 (YOR164C homolog); 92.1 5.4 0.00018 34.4 27.9 32 239-270 183-215 (336)
297 3spa_A Mtrpol, DNA-directed RN 92.0 2.3 7.9E-05 42.7 13.1 99 90-202 127-235 (1134)
298 3lpz_A GET4 (YOR164C homolog); 87.7 13 0.00044 32.1 25.0 27 122-148 134-160 (336)
299 4gq2_M Nucleoporin NUP120; bet 85.7 18 0.00061 36.6 14.8 53 96-152 816-868 (950)
300 4ady_A RPN2, 26S proteasome re 85.6 32 0.0011 34.5 24.0 258 2-281 388-666 (963)
301 2wpv_A GET4, UPF0363 protein Y 80.2 27 0.00092 29.8 19.0 27 122-148 132-158 (312)
302 3ax2_A Mitochondrial import re 78.9 8 0.00027 24.8 6.0 35 246-280 21-55 (73)
303 3ax2_A Mitochondrial import re 76.7 7.9 0.00027 24.8 5.5 31 129-159 22-52 (73)
304 4gq2_M Nucleoporin NUP120; bet 75.7 30 0.001 35.0 12.4 94 61-159 816-933 (950)
305 2w2u_A Hypothetical P60 katani 75.2 14 0.00047 24.4 6.7 27 54-80 18-44 (83)
306 1wy6_A Hypothetical protein ST 74.8 23 0.00078 26.1 14.6 80 69-153 75-154 (172)
307 3lay_A Zinc resistance-associa 74.3 2.6 8.7E-05 32.5 3.4 7 338-344 118-124 (175)
308 2v6y_A AAA family ATPase, P60 73.9 15 0.0005 24.2 6.6 27 54-80 10-36 (83)
309 2vkj_A TM1634; membrane protei 73.8 14 0.00049 24.4 6.2 28 53-80 51-78 (106)
310 2br9_A 14-3-3E, 14-3-3 protein 73.6 35 0.0012 27.7 16.5 45 91-135 6-51 (234)
311 2qx5_A Nucleoporin NIC96; mRNA 72.3 70 0.0024 30.6 15.8 31 244-275 538-570 (661)
312 1o9d_A 14-3-3-like protein C; 72.2 40 0.0014 27.8 16.6 44 91-134 9-55 (260)
313 3t5v_B Nuclear mRNA export pro 70.6 21 0.00072 32.4 9.0 92 184-275 140-254 (455)
314 1wfd_A Hypothetical protein 15 70.4 22 0.00075 24.0 8.2 23 57-79 17-39 (93)
315 3ubw_A 14-3-3E, 14-3-3 protein 70.2 45 0.0015 27.5 17.4 174 90-270 31-227 (261)
316 2crb_A Nuclear receptor bindin 69.7 8 0.00027 25.8 4.4 23 210-232 17-39 (97)
317 4a5x_A MITD1, MIT domain-conta 68.2 23 0.0008 23.5 8.4 25 56-80 17-41 (86)
318 4aez_C MAD3, mitotic spindle c 67.2 47 0.0016 26.7 9.3 50 225-274 131-182 (223)
319 3mv2_A Coatomer subunit alpha; 66.9 60 0.0021 27.7 13.1 110 168-277 112-242 (325)
320 1om2_A Protein (mitochondrial 64.7 13 0.00045 25.2 4.8 32 246-277 24-55 (95)
321 3t5x_A PCI domain-containing p 63.0 19 0.00064 28.6 6.4 32 91-122 15-46 (203)
322 2crb_A Nuclear receptor bindin 62.4 15 0.00052 24.5 4.6 28 90-117 15-42 (97)
323 2wpv_A GET4, UPF0363 protein Y 61.3 77 0.0026 27.0 21.7 33 238-270 183-216 (312)
324 1om2_A Protein (mitochondrial 59.7 13 0.00044 25.2 4.0 31 129-159 25-55 (95)
325 2uwj_G Type III export protein 59.6 39 0.0013 23.1 7.3 74 69-149 20-93 (115)
326 3uzd_A 14-3-3 protein gamma; s 59.3 72 0.0025 26.1 17.0 44 92-135 6-50 (248)
327 2ijq_A Hypothetical protein; s 59.3 55 0.0019 24.7 8.5 22 59-80 36-57 (161)
328 2ynq_A ESSB; membrane protein, 59.0 55 0.0019 24.6 8.3 90 56-150 9-99 (161)
329 2p58_C Putative type III secre 58.6 41 0.0014 23.1 7.9 74 69-149 21-94 (116)
330 3ruv_A Chaperonin, CPN; double 58.4 2.1 7.1E-05 40.1 0.0 18 256-273 424-441 (543)
331 3t5x_A PCI domain-containing p 58.0 20 0.00068 28.4 5.7 26 177-202 21-46 (203)
332 2ijq_A Hypothetical protein; s 56.9 58 0.002 24.6 7.7 61 211-271 35-104 (161)
333 2p58_C Putative type III secre 56.8 45 0.0015 22.9 9.5 75 36-116 21-95 (116)
334 3t5v_B Nuclear mRNA export pro 55.9 91 0.0031 28.3 10.3 64 178-241 184-254 (455)
335 2uwj_G Type III export protein 55.9 46 0.0016 22.8 7.9 56 56-117 40-95 (115)
336 2npm_A 14-3-3 domain containin 55.4 87 0.003 25.8 16.7 45 91-135 29-77 (260)
337 4a5x_A MITD1, MIT domain-conta 53.3 46 0.0016 22.0 8.8 16 254-269 28-43 (86)
338 4ady_A RPN2, 26S proteasome re 53.2 1.9E+02 0.0065 29.1 21.0 85 64-152 383-482 (963)
339 2v6x_A Vacuolar protein sortin 52.2 47 0.0016 21.8 8.2 24 57-80 15-38 (85)
340 2w2u_A Hypothetical P60 katani 51.9 24 0.00082 23.2 4.4 21 250-270 27-47 (83)
341 2cfu_A SDSA1; SDS-hydrolase, l 50.0 35 0.0012 32.8 7.0 52 89-140 448-499 (658)
342 2cpt_A SKD1 protein, vacuolar 48.7 69 0.0023 22.7 8.4 21 59-79 22-42 (117)
343 2v6y_A AAA family ATPase, P60 47.6 30 0.001 22.7 4.4 19 252-270 21-39 (83)
344 2rpa_A Katanin P60 ATPase-cont 47.3 18 0.0006 23.5 3.1 27 245-271 15-41 (78)
345 2dl1_A Spartin; SPG20, MIT, st 45.5 28 0.00094 24.6 4.0 16 224-239 19-34 (116)
346 2rpa_A Katanin P60 ATPase-cont 45.4 19 0.00066 23.3 3.0 25 213-237 17-41 (78)
347 1kp8_A Groel protein; chaperon 44.2 4.8 0.00016 37.6 0.0 10 261-270 438-447 (547)
348 2cfu_A SDSA1; SDS-hydrolase, l 43.6 43 0.0015 32.1 6.5 52 123-177 448-499 (658)
349 3mkr_B Coatomer subunit alpha; 43.0 1.6E+02 0.0054 25.2 13.8 107 169-275 101-231 (320)
350 3re2_A Predicted protein; meni 42.7 1.7E+02 0.0058 25.5 9.7 57 227-283 276-343 (472)
351 4aez_C MAD3, mitotic spindle c 42.6 67 0.0023 25.8 6.4 77 144-239 97-181 (223)
352 3lvg_A Clathrin heavy chain 1; 39.4 0.088 3E-06 47.8 -11.6 167 61-262 150-324 (624)
353 3u84_A Menin; MLL, JUND, ledgf 37.5 2.2E+02 0.0076 25.3 9.6 58 227-284 298-366 (550)
354 1wfd_A Hypothetical protein 15 36.9 94 0.0032 20.8 10.3 14 262-275 42-55 (93)
355 3myv_A SUSD superfamily protei 36.6 80 0.0027 28.6 6.9 31 207-237 189-219 (454)
356 1wy6_A Hypothetical protein ST 36.4 1.3E+02 0.0044 22.2 14.9 54 218-271 101-154 (172)
357 3myv_A SUSD superfamily protei 36.0 48 0.0017 30.0 5.4 46 107-152 165-218 (454)
358 4b4t_W RPN10, 26S proteasome r 35.2 9.7 0.00033 31.7 0.5 18 276-293 85-102 (268)
359 3mcx_A SUSD superfamily protei 35.0 97 0.0033 28.2 7.3 31 207-237 201-231 (477)
360 3eab_A Spastin; spastin, MIT, 34.3 6 0.00021 26.4 -0.7 15 140-154 13-27 (89)
361 3lew_A SUSD-like carbohydrate 34.0 89 0.003 28.7 6.9 31 207-237 202-232 (495)
362 3kez_A Putative sugar binding 33.9 87 0.003 28.4 6.7 31 207-237 195-225 (461)
363 3iqu_A 14-3-3 protein sigma; s 33.6 1.9E+02 0.0065 23.4 17.7 46 90-135 8-54 (236)
364 3ubw_A 14-3-3E, 14-3-3 protein 33.2 2E+02 0.007 23.6 16.4 177 57-236 33-227 (261)
365 3kez_A Putative sugar binding 32.9 53 0.0018 29.9 5.1 46 107-152 171-224 (461)
366 1iok_A Chaperonin 60; chaperon 31.5 10 0.00034 35.5 0.0 9 261-269 439-447 (545)
367 3mcx_A SUSD superfamily protei 31.5 59 0.002 29.7 5.2 48 106-153 176-231 (477)
368 3lew_A SUSD-like carbohydrate 31.4 1E+02 0.0036 28.2 6.9 30 124-153 203-232 (495)
369 2ynq_A ESSB; membrane protein, 30.8 1.7E+02 0.0058 22.0 10.1 84 94-195 12-98 (161)
370 2cwy_A Hypothetical protein TT 30.6 1.2E+02 0.0042 20.3 6.1 56 95-152 6-67 (94)
371 1g1e_B SIN3A; four-helix bundl 30.2 1.2E+02 0.0042 20.1 6.8 34 257-290 9-42 (89)
372 3dza_A Uncharacterized putativ 29.9 2E+02 0.0067 22.4 6.9 101 94-198 39-178 (191)
373 3k1s_A PTS system, cellobiose- 29.7 1.4E+02 0.0049 20.7 5.9 35 46-80 13-47 (109)
374 3q2s_C Cleavage and polyadenyl 29.1 12 0.0004 30.4 0.0 19 301-319 74-92 (229)
375 3q2s_C Cleavage and polyadenyl 28.9 12 0.0004 30.4 0.0 10 308-317 121-130 (229)
376 4b4t_O 26S proteasome regulato 27.8 3.1E+02 0.011 24.1 11.5 87 184-270 90-197 (393)
377 1wcr_A PTS system, N, N'-diace 27.0 1.5E+02 0.0053 20.3 6.0 34 47-80 10-43 (103)
378 2e2a_A Protein (enzyme IIA); h 26.9 1.6E+02 0.0054 20.3 5.9 34 47-80 12-45 (105)
379 3l8r_A PTCA, putative PTS syst 26.8 1.7E+02 0.0059 20.7 6.4 36 45-80 27-62 (120)
380 3mv2_A Coatomer subunit alpha; 26.7 3E+02 0.01 23.5 14.5 105 55-159 114-242 (325)
381 4abx_A DNA repair protein RECN 26.4 2.1E+02 0.0073 21.7 7.6 50 225-274 73-122 (175)
382 4a1g_A Mitotic checkpoint seri 26.2 2E+02 0.0069 21.4 12.8 50 225-274 82-133 (152)
383 3ruv_A Chaperonin, CPN; double 26.1 14 0.00048 34.5 0.0 14 89-102 146-159 (543)
384 2cwy_A Hypothetical protein TT 26.1 1.5E+02 0.0052 19.8 6.2 55 214-270 7-67 (94)
385 2v6x_A Vacuolar protein sortin 25.7 1.4E+02 0.0048 19.4 8.7 17 254-270 25-41 (85)
386 3re2_A Predicted protein; meni 25.4 3.4E+02 0.012 23.7 9.4 44 109-152 276-324 (472)
387 3qnk_A Putative lipoprotein; a 25.3 1.5E+02 0.0051 27.3 6.8 30 207-236 181-210 (517)
388 3hdx_A SUSD homolog, SUSD supe 25.0 1.6E+02 0.0056 26.7 7.0 31 207-237 196-226 (478)
389 3qtm_A Uncharacterized protein 24.1 3.1E+02 0.01 22.7 10.9 80 175-254 27-131 (346)
390 3rtk_A 60 kDa chaperonin 2; he 24.1 16 0.00056 34.1 0.0 10 399-408 532-541 (546)
391 3efz_A 14-3-3 protein; 14-3-3, 24.0 3.1E+02 0.01 22.7 11.7 65 207-271 141-226 (268)
392 4gq4_A Menin; tumor suppressor 23.4 4E+02 0.014 23.8 10.0 60 226-285 282-352 (489)
393 3s6n_M SurviVal motor neuron p 23.3 64 0.0022 17.0 2.1 15 4-18 18-32 (37)
394 2qx5_A Nucleoporin NIC96; mRNA 23.1 3.1E+02 0.011 26.3 8.5 21 96-116 449-469 (661)
395 3snx_A SUSD homolog, putative 22.2 1.6E+02 0.0056 26.6 6.3 31 207-237 190-220 (460)
396 3bu8_A Telomeric repeat-bindin 22.0 3E+02 0.01 21.9 9.9 66 106-174 88-161 (235)
397 3lvg_A Clathrin heavy chain 1; 21.8 0.73 2.5E-05 42.0 -8.9 146 61-229 176-325 (624)
398 1a6d_A Thermosome (alpha subun 20.6 21 0.00072 33.4 0.0 18 256-273 428-445 (545)
399 3qtm_A Uncharacterized protein 20.6 3.7E+02 0.013 22.3 13.4 32 4-35 101-132 (346)
400 2dl1_A Spartin; SPG20, MIT, st 20.2 1.5E+02 0.0051 20.9 4.2 26 245-270 25-50 (116)
401 1h2v_Z 20 kDa nuclear CAP bind 20.1 27 0.00093 26.0 0.6 20 300-319 44-63 (156)
No 1
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.9e-45 Score=343.07 Aligned_cols=360 Identities=31% Similarity=0.496 Sum_probs=312.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----------------HHHHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----------------QAQSTFDSALK 64 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----------------~~~~~~~~a~~ 64 (409)
+|++++|+..|+++++.+|+++.++..+|.+|..+|++++|...+.+.+...+ .....+..|..
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888887777665211 11234556777
Q ss_pred HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
++..|++++|+..|++ ++...|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+
T Consensus 153 ~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDK-ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999998 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
..|++++..+|++......+..+..+......+..+...|++++|+.+|++++++.|+++.....++..+|.++...|++
T Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 99999999999998854444444444444555666677799999999999999999996554467899999999999999
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhccc
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVS 304 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 304 (409)
++|+..+++++.++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+..+...++.....++|.++++.
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ccCCHHHHHHHHHHHHhccCCCCCCCc--hHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 305 KTASISEIKRAYKKLALQWHPDKNVDN--REEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 305 ~~~~~~e~~~~y~~~a~~~~~d~~~~~--~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
+.++.++++++|+++++.+|||+.+.. +..++++|++|.+||++|+||++|.+||+|
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 999999999999999999999997764 478999999999999999999999999986
No 2
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4.6e-33 Score=251.85 Aligned_cols=291 Identities=25% Similarity=0.388 Sum_probs=242.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----HHHHH------------HHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----QAQST------------FDSALKL 65 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~------------~~~a~~~ 65 (409)
|++++|+..|+++++.+|+++.++..+|.++...|++++|...+.+.+...+ ..... +..|..+
T Consensus 51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777777777777766655222 22222 2336778
Q ss_pred HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837 66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 145 (409)
...|++++|+..+++ ++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.
T Consensus 131 ~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 131 FDGADYTAAITFLDK-ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHccCHHHHHHHHHH-HHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888888 7888888888888889999999999999999999998888888888899999999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~ 225 (409)
.+++++..+|++......+..+..+......+..++..|++++|+..++++++..|+++.....++..+|.++...|+++
T Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 99999988888887555555555555566667778888999999999999999999966545567889999999999999
Q ss_pred HHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Q 043837 226 DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK 293 (409)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 293 (409)
+|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+..+...+++++
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988887654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6e-33 Score=254.51 Aligned_cols=272 Identities=17% Similarity=0.160 Sum_probs=200.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|++++|+..|.++++.+|+++.++..++.++...|++++|...+...+... .....++..+..+...|++++|+..|++
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677888888888888888888888888888888888888877777776643 3455667777777777777777777777
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|++++..+|++..
T Consensus 93 -al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~- 170 (388)
T 1w3b_A 93 -ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV- 170 (388)
T ss_dssp -HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH-
T ss_pred -HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-
Confidence 677777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
++..++.++... |++++|+..|+++++++|+ ...++.++|.++...+++++|+..+++++.++|+
T Consensus 171 --~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 171 --AWSNLGCVFNAQ---------GEIWLAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp --HHHHHHHHHHTT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred --HHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 777777776665 7777777777777777776 5556777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
++.++..+|.++...|++++|+..|+++++++|+++.++..+..+....+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 77777777777777777777777777777777776666666655554443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-33 Score=257.32 Aligned_cols=275 Identities=19% Similarity=0.188 Sum_probs=237.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++++|+..++++++.+|.++.++..+|.++...|++++|+..+.+++...+ ....++..+..+...|++++|+..|.
T Consensus 46 ~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999887533 34567788888999999999999998
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+ ++..+|+...++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++..
T Consensus 126 ~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 204 (388)
T 1w3b_A 126 S-ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp H-HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred H-HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 8 888899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
++..++.++... +++++|+..+++++.++|+ +..++.++|.++...|++++|+..++++++++|
T Consensus 205 ---~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 268 (388)
T 1w3b_A 205 ---AYINLGNVLKEA---------RIFDRAVAAYLRALSLSPN----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp ---HHHHHHHHHHTT---------TCTTHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred ---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888777 8888888888888888887 666888888888888888888888888888888
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS 292 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 292 (409)
+++.++..+|.++...|++++|+..|++++++.|++..++..+..+....+..
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 88888888888888888888888888888888888888777777766554443
No 5
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=8.7e-31 Score=236.85 Aligned_cols=295 Identities=18% Similarity=0.225 Sum_probs=263.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+.+.+...+ ....++..+..+...|++++|+..+.
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999988533 45778889999999999999999999
Q ss_pred HHHHhhCC---CcHHHHHHH------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 80 KVVLVFSP---ACSKAKLLK------------VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 80 ~~~~~~~p---~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
+ ++...| .+..++..+ |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+
T Consensus 96 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 96 K-VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp H-HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred H-HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 9 899999 888888777 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH--------HHHHHHHH
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV--------HLYLGLCK 216 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~la~ 216 (409)
..+++++..+|++.. ++..++.++... |++++|+..++++++..|+++.... .....+|.
T Consensus 175 ~~~~~~~~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 175 SDLKAASKLKSDNTE---AFYKISTLYYQL---------GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHHHHHHTTCSCCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 899999999888 9999999999999999998543100 11235589
Q ss_pred HHHHcCChhHHHHHHHHHHhcChhcHH----HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837 217 VLVKLGRGKDALSSCTEALNINEELIE----ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS 292 (409)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 292 (409)
++...|++++|+..++++++..|+++. ++..+|.++...|++++|+..++++++.+|+++.++..++.+....+.
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 321 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM- 321 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-
Confidence 999999999999999999999998874 466799999999999999999999999999999999999888876655
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPD 326 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d 326 (409)
.++....|++ +....|+
T Consensus 322 ----------------~~~A~~~~~~-a~~~~p~ 338 (359)
T 3ieg_A 322 ----------------YDEAIQDYEA-AQEHNEN 338 (359)
T ss_dssp ----------------HHHHHHHHHH-HHTTCTT
T ss_pred ----------------HHHHHHHHHH-HHhcCCC
Confidence 5667777776 4444554
No 6
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=240.29 Aligned_cols=274 Identities=16% Similarity=0.101 Sum_probs=255.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCC-CchHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSG-EYTKPLEYI 78 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~-~~~~A~~~~ 78 (409)
.|++++|+..|+++++.+|.+..++..++.++...|++++|...+.+.+... .....++..+..+...| ++++|+.++
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 114 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999998854 34677888999999999 999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837 79 DKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 79 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (409)
.+ ++..+|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++..+|++.
T Consensus 115 ~~-a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 115 SK-ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HH-HHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HH-HHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 99 89999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc-----cchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT-----AHNVHLYLGLCKVLVKLGRGKDALSSCTE 233 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 233 (409)
. ++..++.++... |++++|+.++++++++.|... .....++..+|.++...|++++|+.++++
T Consensus 194 ~---~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 194 F---VMHEVGVVAFQN---------GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp H---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHc---------ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8 899999998887 999999999999999763211 11467999999999999999999999999
Q ss_pred HHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 234 ALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 234 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
+++++|+++.++..+|.++..+|++++|+.+++++++++|+++.++..+..+..
T Consensus 262 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888888763
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=5.5e-30 Score=239.38 Aligned_cols=277 Identities=18% Similarity=0.219 Sum_probs=253.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+.+++... .....++..+..+...|++++|+..|+
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999998853 346677889999999999999999999
Q ss_pred HHHHhhCCCcH---HHHHHH------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 80 KVVLVFSPACS---KAKLLK------------VKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 80 ~~~~~~~p~~~---~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
+ ++..+|.+. .++..+ |.++...|++++|+..|+++++..|.++.++..+|.+|...|++++|+
T Consensus 119 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 119 K-VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp H-HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred H-HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 9 899999988 776555 677999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH----------
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL---------- 214 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l---------- 214 (409)
..|++++..+|++.. ++..++.++... |++++|+..+++++.+.|++ ...+..+
T Consensus 198 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 198 SDLKAASKLKNDNTE---AFYKISTLYYQL---------GDHELSLSEVRECLKLDQDH----KRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHHHHCSCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHH
Confidence 999999999999988 899999998888 99999999999999999994 4444444
Q ss_pred --HHHHHHcCChhHHHHHHHHHHhcChhcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 215 --CKVLVKLGRGKDALSSCTEALNINEELI----EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 215 --a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
|.++...|++++|+..|++++++.|+++ .++..+|.++...|++++|+..++++++++|++..++..+..+...
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999874 4788999999999999999999999999999999999999998887
Q ss_pred Hhhcch
Q 043837 289 LKMSKR 294 (409)
Q Consensus 289 ~~~~~~ 294 (409)
.+....
T Consensus 342 ~~~~~~ 347 (450)
T 2y4t_A 342 EEMYDE 347 (450)
T ss_dssp TTCHHH
T ss_pred hcCHHH
Confidence 765443
No 8
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.1e-30 Score=237.38 Aligned_cols=275 Identities=17% Similarity=0.134 Sum_probs=244.9
Q ss_pred CCChHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHH
Q 043837 1 MKHYSEALD-DLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKP 74 (409)
Q Consensus 1 lg~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A 74 (409)
+++|++|+. .|++++.+.|+++ ..++.+|.++...|++++|+..+.+.+.. +.....++..+..+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 478999999 9999999988774 56899999999999999999999999884 34566778899999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH----------------HHHHHHHhcC
Q 043837 75 LEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALL----------------HRGRAYYYLA 138 (409)
Q Consensus 75 ~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~~~~ 138 (409)
+..+.+ ++..+|.++.++..+|.++...|++++|+..+++++..+|.+...+. .++.++ ..|
T Consensus 118 ~~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (368)
T 1fch_A 118 ISALRR-CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS 195 (368)
T ss_dssp HHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH
T ss_pred HHHHHH-HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc
Confidence 999999 89999999999999999999999999999999999999999877664 466666 999
Q ss_pred ChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH
Q 043837 139 DHDVAQRHFQKGLRLDPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK 216 (409)
Q Consensus 139 ~~~~A~~~~~~al~~~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~ 216 (409)
++++|+..+++++..+|+ +.. ++..++.++... |++++|+..+++++.+.|+ ...++.++|.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~----~~~~~~~l~~ 259 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPD---VQCGLGVLFNLS---------GEYDKAVDCFTAALSVRPN----DYLLWNKLGA 259 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcC----CHHHHHHHHH
Confidence 999999999999999999 677 888899888887 9999999999999999999 6779999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc-----------HHHHHHHHHH
Q 043837 217 VLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD-----------MNIREALMRA 285 (409)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~ 285 (409)
++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|++++++.|++ ..++..+..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988 7888888888
Q ss_pred HHHHhhcc
Q 043837 286 EKALKMSK 293 (409)
Q Consensus 286 ~~~~~~~~ 293 (409)
...+++..
T Consensus 340 ~~~~g~~~ 347 (368)
T 1fch_A 340 LSMLGQSD 347 (368)
T ss_dssp HHHHTCGG
T ss_pred HHHhCChH
Confidence 87776543
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=239.54 Aligned_cols=257 Identities=16% Similarity=0.098 Sum_probs=180.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH---------------------------
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL--------------------------- 53 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--------------------------- 53 (409)
+|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.+.+...+
T Consensus 52 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 52 VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999999999999999999998887776543210
Q ss_pred -----------------------------------------------------HHHHHHHHHHHHHh---CCCchHHHHH
Q 043837 54 -----------------------------------------------------QAQSTFDSALKLYD---SGEYTKPLEY 77 (409)
Q Consensus 54 -----------------------------------------------------~~~~~~~~a~~~~~---~~~~~~A~~~ 77 (409)
.....+..+..++. .|++++|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 13344555555554 6778888888
Q ss_pred HHHHHHh-----h--C-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837 78 IDKVVLV-----F--S-------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 78 ~~~~~~~-----~--~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 143 (409)
+++ ++. . + |..+.++..+|.++...|++++|+..++++++.+|. ..++..+|.++...|++++|
T Consensus 212 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 212 FTK-AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHH-HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTG
T ss_pred HHH-HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHH
Confidence 877 555 3 2 455677888888888888888888888888888888 77888888888888888888
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~ 223 (409)
+..+++++..+|.+.. ++..++.++... |++++|+..+++++++.|. +..++..+|.++...|+
T Consensus 290 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 290 YNYFDKALKLDSNNSS---VYYHRGQMNFIL---------QNYDQAGKDFDKAKELDPE----NIFPYIQLACLAYRENK 353 (514)
T ss_dssp GGHHHHHHTTCTTCTH---HHHHHHHHHHHT---------TCTTHHHHHHHHHHHTCSS----CSHHHHHHHHHTTTTTC
T ss_pred HHHHHHHhhcCcCCHH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHHcCC
Confidence 8888888888887777 777777777665 5666666666666665555 33355555555555555
Q ss_pred hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 224 GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
+++|+..++++++..|+++.++..+|.++...|++++|+..++++++..|++
T Consensus 354 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 5555555555555555555555555555555555555555555555555554
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=2.2e-30 Score=234.52 Aligned_cols=258 Identities=14% Similarity=0.053 Sum_probs=232.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHhhCCCcHH
Q 043837 14 AIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGE-YTKPLEYIDKVVLVFSPACSK 91 (409)
Q Consensus 14 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~p~~~~ 91 (409)
+|.++|++..++..+|.++...|++++|+..+.+++... .....++.++..+...|+ +++|+..|++ ++..+|++..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~-al~l~P~~~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHCTTCHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHH-HHHHCCCCHH
Confidence 356778889999999999999999999999999998854 446778889999999996 9999999999 9999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL 171 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 171 (409)
+|+.+|.++..+|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+.+|++++.++|++.. +|..++.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~---a~~~lg~~l 244 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS---VWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 999999998
Q ss_pred HHHHHHhhHHhcCCHHHH-----HHHHHHHHccCCCCccchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcChhcHHH
Q 043837 172 KKTKSAEDNVSKGKLRVA-----VEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG--RGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~ 244 (409)
..+ .+.+++| +.+|++++.++|+ +..+|.+++.++...| ++++|+..+.++ +.+|+++.+
T Consensus 245 ~~l--------~~~~~eA~~~~el~~~~~Al~l~P~----~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~a 311 (382)
T 2h6f_A 245 SNT--------TGYNDRAVLEREVQYTLEMIKLVPH----NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYL 311 (382)
T ss_dssp HHT--------TCSCSHHHHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHH
T ss_pred HHh--------cCcchHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHH
Confidence 873 0554777 5999999999999 6779999999999988 699999999998 999999999
Q ss_pred HHHHHHHHHhcc--------C-HHHHHHHHHHH-HhhCCCcHHHHHHHHHHHHH
Q 043837 245 LVQRGEAKLLTE--------D-WEGAVEDLKSA-AQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 245 ~~~la~~~~~~~--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 288 (409)
+..+|.+|..++ + +++|+.+|+++ ++++|.....+..+......
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 999999999984 3 59999999999 99999999988877766543
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.2e-29 Score=241.24 Aligned_cols=273 Identities=14% Similarity=0.079 Sum_probs=250.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++++|+..|+++++.+|++..++..++.++...|++++|...+...+... .....+...+..+...|++++|+.+|+
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998887643 345667778899999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+ ++..+|.+..++..++.++...|++++|+..|+++++..|++..++..++.+|...|++++|+..|++++...|++..
T Consensus 398 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 476 (597)
T 2xpi_A 398 K-SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476 (597)
T ss_dssp H-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred H-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 9 888999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC---CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN---HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
++..++.++... |++++|+..|++++++.|+ ++.....++..++.++...|++++|+..++++++
T Consensus 477 ---~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 477 ---LLNELGVVAFNK---------SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp ---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 899999998887 9999999999999998432 2221378999999999999999999999999999
Q ss_pred cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
++|+++.++..++.+|...|++++|+..|+++++++|+++.++..+..++
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777653
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.3e-29 Score=223.23 Aligned_cols=264 Identities=13% Similarity=0.040 Sum_probs=237.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc
Q 043837 11 LNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC 89 (409)
Q Consensus 11 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~ 89 (409)
....+...|+++..+..+|.++...|++++|+..+.+.+...+. .......+..++..|++++|+..+.+ ++..+|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~ 89 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK-LVDLYPSN 89 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTS
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHH-HHHhCcCC
Confidence 44566677888899999999999999999999999998875433 34455678888999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK 168 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 168 (409)
+.++..+|.++...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|++.. .+..++
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~ 166 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL---PMLYIG 166 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH---HHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH---HHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999888 788888
Q ss_pred HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---------h
Q 043837 169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN---------E 239 (409)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p 239 (409)
.++... |++++|+..++++++..|+ +..++..+|.++...|++++|+..+++++... |
T Consensus 167 ~~~~~~---------~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 167 LEYGLT---------NNSKLAERFFSQALSIAPE----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp HHHHHT---------TCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred HHHHHH---------hhHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence 888877 9999999999999999999 67899999999999999999999999999986 6
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
..+.++..+|.++...|++++|+..++++++++|++..++..++.+....+.
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 7788999999999999999999999999999999999999999988877765
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=2.3e-28 Score=233.48 Aligned_cols=187 Identities=18% Similarity=0.146 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837 71 YTKPLEYIDKVVLVFSPACSK-------AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 71 ~~~A~~~~~~~~~~~~p~~~~-------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 143 (409)
+++|+..+++ ++..+|.++. ++..+|.++...|++++|+..++++++.+|+ ..++..+|.++...|++++|
T Consensus 218 ~~~A~~~~~~-~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 218 LTKSTDMYHS-LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHH-HHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHH-HHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 3444444444 4555565543 4555566666666666666666666666666 66666666666666666666
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~ 223 (409)
+..+++++..+|++.. ++..++.++... |++++|+..+++++++.|+ ...++..+|.++...|+
T Consensus 296 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPP---TYYHRGQMYFIL---------QDYKNAKEDFQKAQSLNPE----NVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCCHH---HHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCC
Confidence 6666666666666666 666666666655 6666666666666666666 34466666666666666
Q ss_pred hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 224 GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
+++|+..++++++.+|+++.++..+|.++...|++++|+..|++++++.|++
T Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 6666666666666666666666666666666666666666666666665544
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=9.3e-30 Score=231.26 Aligned_cols=266 Identities=15% Similarity=0.123 Sum_probs=228.3
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837 9 DDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVL 83 (409)
Q Consensus 9 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 83 (409)
..+.+++...|.++ ..++.+|.++...|++++|+..+.+++... .....++..+..+...|++++|+..|++ ++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR-CL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HH
Confidence 34444444455444 459999999999999999999999998853 4567788999999999999999999999 89
Q ss_pred hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHhcCChHHHHHHHHHHHcc
Q 043837 84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHR----------GRAYYYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~al~~ 153 (409)
..+|.++.++..+|.++...|++++|+..++++++++|++..++..+ |.++...|++++|+.++++++..
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999876666554 99999999999999999999999
Q ss_pred CCC--cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHH
Q 043837 154 DPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSC 231 (409)
Q Consensus 154 ~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 231 (409)
+|+ +.. ++..++.++... |++++|+.+|++++++.|+ +..++.++|.++...|++++|+..|
T Consensus 207 ~p~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 207 NGDMIDPD---LQTGLGVLFHLS---------GEFNRAIDAFNAALTVRPE----DYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp SCSSCCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCccCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999 777 889999999888 9999999999999999999 6779999999999999999999999
Q ss_pred HHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------------HHHHHHHHHHHHHHhh
Q 043837 232 TEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD------------MNIREALMRAEKALKM 291 (409)
Q Consensus 232 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~ 291 (409)
+++++++|+++.++..+|.++..+|++++|+.+|++++++.|++ ..++..+..+...+..
T Consensus 271 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999884 4566666666655543
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=3.6e-29 Score=227.42 Aligned_cols=253 Identities=16% Similarity=0.127 Sum_probs=235.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++... .....++..+..+...|++++|+..+.
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999998854 346677889999999999999999999
Q ss_pred HHHHhhCCCcHHHHH----------------HHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChH
Q 043837 80 KVVLVFSPACSKAKL----------------LKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHD 141 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~----------------~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~ 141 (409)
+ ++...|.+...+. .++.++ ..|++++|+..++++++.+|+ ++.++..+|.++...|+++
T Consensus 157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 157 D-WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp H-HHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred H-HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence 9 8889998877665 456666 999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc
Q 043837 142 VAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL 221 (409)
Q Consensus 142 ~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~ 221 (409)
+|+..|++++.++|++.. ++..++.++... |++++|+..|++++++.|+ ...++.++|.++...
T Consensus 235 ~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 235 KAVDCFTAALSVRPNDYL---LWNKLGATLANG---------NQSEEAVAAYRRALELQPG----YIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHC
Confidence 999999999999999988 899999998888 9999999999999999998 778999999999999
Q ss_pred CChhHHHHHHHHHHhcChhc-----------HHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 222 GRGKDALSSCTEALNINEEL-----------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
|++++|+..+++++.+.|++ ..++..++.++..+|++++|...++++++.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999999999988 899999999999999999999999877764
No 16
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.3e-28 Score=235.62 Aligned_cols=289 Identities=17% Similarity=0.094 Sum_probs=261.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|++++|+..|+++++. |.++.++..++.++...|++++|+..+.+.+...+ ....+...+..+...|++++|+..+.+
T Consensus 286 g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5688999999999988 78899999999999999999999999999887432 344566778888999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
++...|.++.++..++.+|...|++++|+..|+++++++|.+..+|..++.+|...|++++|+..|++++...|++..
T Consensus 365 -~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 442 (597)
T 2xpi_A 365 -LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL- 442 (597)
T ss_dssp -HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH-
T ss_pred -HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH-
Confidence 779999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--- 237 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 237 (409)
.+..++.++... |++++|+..|+++++..|. +..++..++.++...|++++|+..|+++++.
T Consensus 443 --~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 443 --PYLFLGMQHMQL---------GNILLANEYLQSSYALFQY----DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp --HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 899999999888 9999999999999999999 6779999999999999999999999999998
Q ss_pred ---Chhc-HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHH
Q 043837 238 ---NEEL-IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIK 313 (409)
Q Consensus 238 ---~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~ 313 (409)
+|++ ..++..++.++...|++++|+..++++++++|++..++..+..+....++ .++..
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------------~~~A~ 570 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI-----------------PGLAI 570 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC-----------------HHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----------------HHHHH
Confidence 5654 88999999999999999999999999999999999999999988876665 55666
Q ss_pred HHHHHHHhccCCC
Q 043837 314 RAYKKLALQWHPD 326 (409)
Q Consensus 314 ~~y~~~a~~~~~d 326 (409)
+.|++ +...+|+
T Consensus 571 ~~~~~-~l~~~p~ 582 (597)
T 2xpi_A 571 THLHE-SLAISPN 582 (597)
T ss_dssp HHHHH-HHHHCTT
T ss_pred HHHHH-HHhcCCC
Confidence 66666 3334444
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=3.2e-29 Score=227.69 Aligned_cols=253 Identities=15% Similarity=0.088 Sum_probs=226.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
.|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.+++... .....++..+..+...|++++|+..+.
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 157 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999998854 346778889999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHH----------HHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 043837 80 KVVLVFSPACSKAKLLK----------VKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHDVAQRHF 147 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~----------a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~ 147 (409)
+ ++...|.+..++..+ +.++...|++++|+..++++++++|+ ++.++..+|.++...|++++|+.+|
T Consensus 158 ~-al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 158 N-WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp H-HHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred H-HHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9 888888876666555 99999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHH
Q 043837 148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDA 227 (409)
Q Consensus 148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 227 (409)
++++..+|++.. ++..++.++... |++++|+..|++++++.|+ ...++.++|.++..+|++++|
T Consensus 237 ~~al~~~p~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 237 NAALTVRPEDYS---LWNRLGATLANG---------DRSEEAVEAYTRALEIQPG----FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHCCCHHHH
Confidence 999999999988 899999999888 9999999999999999999 788999999999999999999
Q ss_pred HHHHHHHHhcChh------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 228 LSSCTEALNINEE------------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 228 ~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
+.+|++++++.|+ +..+|..++.++..+|+.+.|....++.+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999887 367899999999999999998877765433
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=2.5e-29 Score=224.48 Aligned_cols=256 Identities=12% Similarity=0.086 Sum_probs=174.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
|++++|+..|+++++.+|+++.++..+|.++...|++++|...+.+.+... .....++..+..+...|++++|+..+.+
T Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567777777777777777777777777777777777777777777666642 2344556666677777777777777766
Q ss_pred HHHhhCCCcHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837 81 VVLVFSPACSKAKLLK--------------VK-LLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 145 (409)
++...|.+..++..+ +. ++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 115 -WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp -HHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 666666666655555 54 56666777777777777777777777777777777777777777777
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~ 225 (409)
.+++++..+|++.. ++..++.++... |++++|+..++++++..|+ ...++..+|.++...|+++
T Consensus 194 ~~~~~~~~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 194 NLRRAVELRPDDAQ---LWNKLGATLANG---------NRPQEALDAYNRALDINPG----YVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCCcHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhccHH
Confidence 77777777777666 666666666655 7777777777777777776 5556777777777777777
Q ss_pred HHHHHHHHHHhcChh------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 226 DALSSCTEALNINEE------------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 226 ~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
+|+..+++++...|+ ++.++..++.++..+|++++|...++++++..|+
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 777777777777766 6667777777777777777777777666655443
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.3e-28 Score=235.14 Aligned_cols=269 Identities=14% Similarity=0.141 Sum_probs=243.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSE-------AYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKP 74 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 74 (409)
+++++|+..|+++++.+|+++. ++..+|.++...|++++|+..+.+.+...+....++..+..+...|++++|
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 4689999999999999999865 578888999999999999999999998766677788899999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 043837 75 LEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD 154 (409)
Q Consensus 75 ~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 154 (409)
+.++.+ ++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+
T Consensus 296 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 296 FKFFQK-AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc--hHHHHHHHHHHHHHc----------C
Q 043837 155 PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--NVHLYLGLCKVLVKL----------G 222 (409)
Q Consensus 155 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~la~~~~~~----------~ 222 (409)
|++.. ++..++.++... |++++|+..|++++++.|+++.. ....+..+|.++... |
T Consensus 375 ~~~~~---~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 375 PTLPE---VPTFFAEILTDR---------GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp TTCTH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred CCChH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 99998 888999988887 99999999999999988764431 334467889999999 9
Q ss_pred ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837 223 RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM 283 (409)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 283 (409)
++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++++.|++.+....+.
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988765444
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.97 E-value=5.6e-28 Score=211.79 Aligned_cols=259 Identities=13% Similarity=0.048 Sum_probs=224.3
Q ss_pred CCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTL-SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
+|+|.+|+..++++...+|++ .++...++.+|..+|+++.|+..+... ..+........+..+...+++++|++.++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 589999999999988888887 468889999999999999998877553 33445555667777888899999999999
Q ss_pred HHHHhh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc
Q 043837 80 KVVLVF--SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH 157 (409)
Q Consensus 80 ~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 157 (409)
+ ++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|.++..+|++++|+..+++++..+|++
T Consensus 90 ~-ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 90 R-EMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp H-HHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred H-HHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 8 5544 699999999999999999999999999998 8999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
.. ..++..+..+ ....|++++|+..|+++++..|+ ++.++.++|.++..+|++++|+..+++++++
T Consensus 164 ~~-----~~l~~a~~~l-----~~~~~~~~eA~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 164 TL-----TQLATAWVSL-----AAGGEKLQDAYYIFQEMADKCSP----TLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HH-----HHHHHHHHHH-----HHCTTHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHH-----HhCchHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 2222211111 12338999999999999999998 7789999999999999999999999999999
Q ss_pred ChhcHHHHHHHHHHHHhccCHHH-HHHHHHHHHhhCCCcHHHHHH
Q 043837 238 NEELIEALVQRGEAKLLTEDWEG-AVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 238 ~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~ 281 (409)
+|+++.++.+++.++..+|++++ +..+++++++++|+++.+...
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999976 568999999999999987653
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-29 Score=234.95 Aligned_cols=273 Identities=17% Similarity=0.169 Sum_probs=251.1
Q ss_pred CCChHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIE-----A--D-------PTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLY 66 (409)
Q Consensus 1 lg~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~ 66 (409)
.|++++|+..|+++++ + + |.++.++..+|.++...|++++|+..+.+.+...+....++..+..+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA 281 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 3789999999999999 6 4 555788999999999999999999999999885444777788999999
Q ss_pred hCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043837 67 DSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRH 146 (409)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 146 (409)
..|++++|+..+.+ ++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..
T Consensus 282 ~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 282 DRNDSTEYYNYFDK-ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp TSSCCTTGGGHHHH-HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHH-HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc--hHHHHHHHHHHHHH---c
Q 043837 147 FQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH--NVHLYLGLCKVLVK---L 221 (409)
Q Consensus 147 ~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~la~~~~~---~ 221 (409)
+++++..+|++.. ++..++.++... |++++|+..+++++...|+++.. ...++..+|.++.. .
T Consensus 361 ~~~~~~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 361 FSEAKRKFPEAPE---VPNFFAEILTDK---------NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp HHHHHHHSTTCSH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHcccCHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999988 889999988887 99999999999999998874321 14489999999999 9
Q ss_pred CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+...+....
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877765443
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=1.7e-27 Score=215.51 Aligned_cols=247 Identities=11% Similarity=0.033 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD-YASAISETGYLLKEDENNLEALLHRGR 132 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 132 (409)
....+...+..+...|++++|+..|++ ++..+|.+..+|+.+|.++..+|+ +++|+.+|+++++++|++..+|+.+|.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~-al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRD-AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHH-HHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 455667788889999999999999999 999999999999999999999997 999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837 133 AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL 212 (409)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 212 (409)
++..+|++++|+..|++++.++|++.. +|..++.++..+ |++++|+.+|+++++++|+ +..+|+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~---a~~~lg~~~~~~---------g~~~eAl~~~~~al~l~P~----~~~a~~ 238 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYH---AWQHRQWVIQEF---------KLWDNELQYVDQLLKEDVR----NNSVWN 238 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH---------TCCTTHHHHHHHHHHHCTT----CHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCC----CHHHHH
Confidence 999999999999999999999999999 999999999999 9999999999999999999 788999
Q ss_pred HHHHHHHH-cCChhHH-----HHHHHHHHhcChhcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 213 GLCKVLVK-LGRGKDA-----LSSCTEALNINEELIEALVQRGEAKLLTE--DWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 213 ~la~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
++|.++.. .+.+++| +.+|++++.++|++..+|..++.++...| ++++|++.++++ +.+|++..+...+..
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~ 317 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVD 317 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHH
Confidence 99999999 5555888 59999999999999999999999999988 799999999998 999999999999998
Q ss_pred HHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCC
Q 043837 285 AEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD 326 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d 326 (409)
++..+..... .......+++.+.|++++...+|+
T Consensus 318 ~~~~~~~~~~--------~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 318 IYEDMLENQC--------DNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHTTC--------SSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcccc--------cchHHHHHHHHHHHHHHHHHhCch
Confidence 8876642110 000001356777777764566655
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=2.5e-28 Score=204.89 Aligned_cols=196 Identities=19% Similarity=0.226 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY 136 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 136 (409)
.++..+..++..|++++|+..|++ ++..+|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFER-ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345556666666777788888888 8999999999999999999999999999999999999999999999999999999
Q ss_pred c-----------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837 137 L-----------ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205 (409)
Q Consensus 137 ~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 205 (409)
. |++++|+..|+++++++|++.. ++..++.++... |++++|+..|+++++++ +
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~-~--- 149 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP---LHLQRGLVYALL---------GERDKAEASLKQALALE-D--- 149 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC-C---
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHhcc-c---
Confidence 9 9999999999999999999998 899999999888 99999999999999999 6
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
++.++.++|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..++++-.
T Consensus 150 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 150 -TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred -chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 6789999999999999999999999999999999999999999999999999999999987643
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9e-28 Score=206.82 Aligned_cols=241 Identities=15% Similarity=0.182 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc-------HHH
Q 043837 20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC-------SKA 92 (409)
Q Consensus 20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~-------~~~ 92 (409)
..+.++..+|.++...|++++|+..+.+.+........++..|..+...|++++|+..+.+ ++...|.. +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLND-AVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHH-HHHhCcccccchHHHHHH
Confidence 3467888999999999999999999988887555566778888899999999999999988 77777766 799
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 172 (409)
+..+|.++...|++++|+..++++++++|. +.++..++++++|+..+++++..+|.+.. ++..++.++.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAE---EARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHH---HHHHHHHHHH
Confidence 999999999999999999999999999987 45677788899999999999999998887 8889998888
Q ss_pred HHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHH
Q 043837 173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAK 252 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 252 (409)
.. |++++|+..++++++..|. +..++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 151 ~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 151 TK---------SDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred Hh---------cCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 77 9999999999999999999 6789999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhhC------CCcHHHHHHHHHH
Q 043837 253 LLTEDWEGAVEDLKSAAQQS------PQDMNIREALMRA 285 (409)
Q Consensus 253 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 285 (409)
..+|++++|+.+++++++++ |++..+...+..+
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999999999999999 8888877776654
No 25
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=9.8e-28 Score=208.55 Aligned_cols=247 Identities=16% Similarity=0.104 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc----HHHHHHHH
Q 043837 23 EAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC----SKAKLLKV 97 (409)
Q Consensus 23 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~----~~~~~~~a 97 (409)
++++.+|.++...|++++|+..+.+.+...+ ....++..+..++..|++++|+..+.+ ++. .|.+ ..++..+|
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET-YFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHH-HHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH-HHh-ccCchhHHHHHHHHHH
Confidence 3455555555555555555555555554322 223445555555666666677777776 555 3332 45699999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837 98 KLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177 (409)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 177 (409)
.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++..+|.+.. ++..++......
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~--- 155 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK---VFYELGQAYYYN--- 155 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH---HHHHHHHHHHHT---
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH---HHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999998 888888333333
Q ss_pred hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcC---hh-----cHHHHH
Q 043837 178 EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR---GKDALSSCTEALNIN---EE-----LIEALV 246 (409)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~---p~-----~~~~~~ 246 (409)
+++++|+..+++++++.|+ +..++..+|.++..+++ +++|+..+++++++. |+ ...++.
T Consensus 156 ------~~~~~A~~~~~~a~~~~p~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (272)
T 3u4t_A 156 ------KEYVKADSSFVKVLELKPN----IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225 (272)
T ss_dssp ------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 7999999999999999999 67799999999999999 999999999999875 44 347889
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 247 QRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 247 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
.+|.++...|++++|+.+|+++++++|+++.++..+..+..
T Consensus 226 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999888776543
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.3e-26 Score=214.35 Aligned_cols=261 Identities=12% Similarity=0.043 Sum_probs=226.8
Q ss_pred CCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH---------HHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEA---------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ---------AQSTFDSA 62 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~a 62 (409)
+|++++|++.|++++++ +|....+|.++|.+|..+|++++|...+.+++..... +......+
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 58999999999999986 6788899999999999999999999999988774332 34455555
Q ss_pred HHHH--hCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-
Q 043837 63 LKLY--DSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLA---AKDYASAISETGYLLKEDENNLEALLHRGRAYYY- 136 (409)
Q Consensus 63 ~~~~--~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 136 (409)
..+. ..++|++|+.+|++ ++..+|+++.++..++.++.. .+++++|++.++++++++|+++.++..+|..+..
T Consensus 144 ~~~~~~~~~~y~~A~~~~~k-al~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEK-ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHccccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 5554 45689999999999 999999999999999988665 4677899999999999999999999988877655
Q ss_pred ---cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837 137 ---LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213 (409)
Q Consensus 137 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 213 (409)
.+++++|+.++++++..+|++.. ++..++.++... +++++|+..++++++..|+ +..++.+
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~~~~~---~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~ 286 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAPGVTD---VLRSAAKFYRRK---------DEPDKAIELLKKALEYIPN----NAYLHCQ 286 (472)
T ss_dssp C------CHHHHHHHHHHHHCSSCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHc---------CchHHHHHHHHHHHHhCCC----hHHHHHH
Confidence 46788999999999999999998 899999999888 9999999999999999999 7779999
Q ss_pred HHHHHHHc-------------------CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 214 LCKVLVKL-------------------GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 214 la~~~~~~-------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
+|.+|... ..+++|+..++++++++|.+..++..+|.++...|++++|+.+|+++++++|+
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 99988643 34678999999999999999999999999999999999999999999999988
Q ss_pred cHHH
Q 043837 275 DMNI 278 (409)
Q Consensus 275 ~~~~ 278 (409)
+...
T Consensus 367 ~~~~ 370 (472)
T 4g1t_A 367 PVAK 370 (472)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 6553
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=3.2e-27 Score=205.31 Aligned_cols=242 Identities=12% Similarity=0.056 Sum_probs=213.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH----HHHHHHHHHHHHhCCCchHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ----AQSTFDSALKLYDSGEYTKPLE 76 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~A~~ 76 (409)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+.+..... ...++..|..+...|++++|+.
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 479999999999999999999999999999999999999999999999883322 3447889999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 043837 77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE 156 (409)
Q Consensus 77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 156 (409)
.+.+ ++..+|.++.++..+|.++...|++++|+..++++++.+|.++.+++.+|...+..+++++|+..|+++++++|+
T Consensus 96 ~~~~-a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 96 QYQA-AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHH-HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHH-HHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999 899999999999999999999999999999999999999999999999994445556999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHhcCC---HHHHHHHHHHHHccCCCCcc----chHHHHHHHHHHHHHcCChhHHHH
Q 043837 157 HSELKKAYFALKNLLKKTKSAEDNVSKGK---LRVAVEDFKAALALDPNHTA----HNVHLYLGLCKVLVKLGRGKDALS 229 (409)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~ 229 (409)
+.. .+..++.++..+ ++ +++|+..+++++++....+. ....++..+|.++...|++++|+.
T Consensus 175 ~~~---~~~~~~~~~~~~---------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 175 IYI---GYLWRARANAAQ---------DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp CHH---HHHHHHHHHHHH---------STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chH---HHHHHHHHHHHc---------CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 988 889999998888 77 89999999999998632221 134789999999999999999999
Q ss_pred HHHHHHhcChhcHHHHHHHHHHHHhc
Q 043837 230 SCTEALNINEELIEALVQRGEAKLLT 255 (409)
Q Consensus 230 ~~~~al~~~p~~~~~~~~la~~~~~~ 255 (409)
+++++++++|+++.++..++.+....
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHhcCccHHHHHHHhhhhhccc
Confidence 99999999999999998887776544
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=1.4e-26 Score=206.61 Aligned_cols=254 Identities=11% Similarity=0.101 Sum_probs=229.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837 21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL 99 (409)
Q Consensus 21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~ 99 (409)
+...++.+|.++...|++++|+..+.+.+... .....++..+..+...|++++|+..+.+ ++..+|.+..++..+|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH-ARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCcCCHHHHHHHHHH
Confidence 34567899999999999999999999988853 3456677889999999999999999999 899999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837 100 LLAAKDYASAISETGYLLKEDENNLEALLHR--------------GR-AYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164 (409)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 164 (409)
+...|++++|+..++++++.+|.+...+..+ +. ++...|++++|+..+++++..+|++.. ++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ---LH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH---HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH---HH
Confidence 9999999999999999999999988877776 66 788999999999999999999999888 89
Q ss_pred HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (409)
..++.++... |++++|+..++++++..|+ ...++..+|.++...|++++|+..++++++.+|+++.+
T Consensus 176 ~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 242 (327)
T 3cv0_A 176 ASLGVLYNLS---------NNYDSAAANLRRAVELRPD----DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242 (327)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHh---------ccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 9999988887 9999999999999999998 67799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHHhh
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ------------DMNIREALMRAEKALKM 291 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~ 291 (409)
+..+|.++..+|++++|+..+++++++.|+ +..++..+..+...+++
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999 77888888887776654
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=7.9e-27 Score=219.40 Aligned_cols=268 Identities=16% Similarity=0.033 Sum_probs=199.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHH----hCCCchH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQ---LCRVKARNSVAEKELSQLL-QAQSTFDSALKLY----DSGEYTK 73 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~----~~~~~~~ 73 (409)
++|++|+.+|+++++++|+++.++..++.++.. .++.++|+..+.+++...+ ........+..+. ..+++++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 468999999999999999999999999988654 5677888888888887432 2333344444433 3578899
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----------------
Q 043837 74 PLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL---------------- 137 (409)
Q Consensus 74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------------- 137 (409)
|+.++++ ++..+|..+.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...
T Consensus 232 a~~~~~~-al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 232 GEKLVEE-ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHH-HHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHH-HHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999998 89999999999999999999999999999999999999999999999999988643
Q ss_pred ---CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837 138 ---ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214 (409)
Q Consensus 138 ---~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 214 (409)
..+++|+..+++++.++|.+.. ++..++.++... +++++|+.+|++++++.|++.. ...++..+
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~lg~~~~~~---------~~~~~A~~~~~kaL~~~~~~~~-~~~~~~~~ 377 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEANDNLFR---VCSILASLHALA---------DQYEEAEYYFQKEFSKELTPVA-KQLLHLRY 377 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCC---CHHHHHHHHHHT---------TCHHHHHHHHHHHHHSCCCHHH-HHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhhcCCchhh---hhhhHHHHHHHh---------ccHHHHHHHHHHHHhcCCCChH-HHHHHHHH
Confidence 3467899999999999999888 888999998888 9999999999999999887432 33456666
Q ss_pred HHH-HHHcCChhHHHHHHHHHHhcC------------------------hhcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837 215 CKV-LVKLGRGKDALSSCTEALNIN------------------------EELIEALVQRGEAKLLTEDWEGAVEDLKSAA 269 (409)
Q Consensus 215 a~~-~~~~~~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 269 (409)
|.+ +...+++++|+..|+++++++ |+++.++..+|.+|..+|++++|+++|++|+
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 654 457889999999999988764 5566788889999999999999999999999
Q ss_pred hhCCCcHHHHHHHH
Q 043837 270 QQSPQDMNIREALM 283 (409)
Q Consensus 270 ~~~p~~~~~~~~l~ 283 (409)
++.|.++.+...++
T Consensus 458 e~~~~~p~a~~~~G 471 (472)
T 4g1t_A 458 ESGSLIPSASSWNG 471 (472)
T ss_dssp --------------
T ss_pred hcCCCCCcHhhcCC
Confidence 99888887766553
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2e-26 Score=193.21 Aligned_cols=197 Identities=22% Similarity=0.181 Sum_probs=176.6
Q ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837 87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA 166 (409)
Q Consensus 87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 166 (409)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++.. ++..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---GYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999999999999998 8888
Q ss_pred HHHHHHHHHH--HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837 167 LKNLLKKTKS--AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 167 l~~~~~~~~~--~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (409)
++.++..... .......|++++|+..|+++++++|+ +..++.++|.++..+|++++|+..|+++++++ +++.+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 153 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR----YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI 153 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence 8888765410 01112238899999999999999999 77899999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
+..+|.++..+|++++|+..|+++++++|+++.+...+..+....+.
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999998888877655443
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.95 E-value=3.7e-26 Score=186.58 Aligned_cols=174 Identities=22% Similarity=0.253 Sum_probs=165.4
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l 167 (409)
.++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+.+++...|++.. ++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---AYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---HHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---HHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999998 88888
Q ss_pred HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHH
Q 043837 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQ 247 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (409)
+.++... ++++.|+..+.+++.+.|+ +..++..+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 80 ~~~~~~~---------~~~~~a~~~~~~a~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 80 GSANFMI---------DEKQAAIDALQRAIALNTV----YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHc---------CCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 8888777 9999999999999999999 77799999999999999999999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 248 RGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 248 la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
+|.+|..+|++++|+.+|+++++++|+++.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999999998644
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-25 Score=192.56 Aligned_cols=226 Identities=17% Similarity=0.175 Sum_probs=210.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCch
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ--------AQSTFDSALKLYDSGEYT 72 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~ 72 (409)
.|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+.+.+...+. ...++..+..+...|+++
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH
Confidence 489999999999999999 99999999999999999999999999999886554 577889999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+|+..+.+ ++...|. +.++...+++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++.
T Consensus 97 ~A~~~~~~-a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 97 KTIEYYQK-SLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHH-HHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999 8888876 56788889999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837 153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232 (409)
Q Consensus 153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 232 (409)
.+|++.. ++..++.++... |++++|+.+++++++..|+ ...++..+|.++...|++++|+..++
T Consensus 168 ~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 168 RAPEDAR---GYSNRAAALAKL---------MSFPEAIADCNKAIEKDPN----FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcccHH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999988 899999998888 9999999999999999999 77899999999999999999999999
Q ss_pred HHHhcC------hhcHHHHHHHHHHH
Q 043837 233 EALNIN------EELIEALVQRGEAK 252 (409)
Q Consensus 233 ~al~~~------p~~~~~~~~la~~~ 252 (409)
++++++ |++..++..++.++
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHhh
Confidence 999999 88888887777653
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.95 E-value=6.6e-26 Score=193.41 Aligned_cols=216 Identities=19% Similarity=0.191 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA 133 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 133 (409)
.+..++.+|..++..|++++|+.++++ ++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~-~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTK-AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHH-HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 455667788888889999999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 213 (409)
+...|++++|+..+++++..+|.+.. ++..++.++... |++++|+..++++++..|+ ...++..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~ 164 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGD---LFYMLGTVLVKL---------EQPKLALPYLQRAVELNEN----DTEARFQ 164 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHT---------SCHHHHHHHHHHHHHHCTT----CHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh---------ccHHHHHHHHHHHHHhCCc----cHHHHHH
Confidence 99999999999999999999999988 888888888877 9999999999999999998 6779999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 214 LCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 214 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|++..+...+..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877665543
No 34
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2e-26 Score=225.26 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=210.0
Q ss_pred HhCCCchHHHHHHHHHHH--------hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837 66 YDSGEYTKPLEYIDKVVL--------VFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL 137 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 137 (409)
+..+++++|+..+++ ++ ..+|.+..+++.+|.++...|++++|+..|+++++.+|++..+|+.+|.++..+
T Consensus 402 ~~~~~~~~A~~~~~~-al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRA-ARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHH-HHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHH-hhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 778999999999999 77 889999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHH
Q 043837 138 ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKV 217 (409)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~ 217 (409)
|++++|+..|+++++++|++.. ++.+++.++... |++++ +..|+++++++|+ +..+++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~---~~~~lg~~~~~~---------g~~~~-~~~~~~al~~~P~----~~~a~~~lg~~ 543 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELA---PKLALAATAELA---------GNTDE-HKFYQTVWSTNDG----VISAAFGLARA 543 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHH---------TCCCT-TCHHHHHHHHCTT----CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHc---------CChHH-HHHHHHHHHhCCc----hHHHHHHHHHH
Confidence 9999999999999999999998 999999999988 99999 9999999999999 77799999999
Q ss_pred HHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccC--------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 218 LVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTED--------WEGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
+..+|++++|+..|+++++++|++..++.++|.++...++ +++|.+.+.......|....+...+......+
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~ 623 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLGGALDW 623 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987555 55555544444333444455555555555556
Q ss_pred hhcchhhhhhhhcccccCCH--HHHHHHHHHHHhccCCC
Q 043837 290 KMSKRKDWYKILGVSKTASI--SEIKRAYKKLALQWHPD 326 (409)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~--~e~~~~y~~~a~~~~~d 326 (409)
......++|++||+...... .+++++||+++...+++
T Consensus 624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~ 662 (681)
T 2pzi_A 624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ 662 (681)
T ss_dssp HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh
Confidence 66667779999999766655 77999999998876544
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.5e-25 Score=202.32 Aligned_cols=280 Identities=17% Similarity=0.116 Sum_probs=232.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHhCC
Q 043837 1 MKHYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQ-------LLQAQSTFDSALKLYDSG 69 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~~~~~~~~~~a~~~~~~~ 69 (409)
+|++++|+..|+++++.+|.++ .++..+|.++...|++++|+..+.+++.. ..........+..+...|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999999984 67899999999999999999999988774 234667788999999999
Q ss_pred CchHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh----
Q 043837 70 EYTKPLEYIDKVVLVFSPAC------SKAKLLKVKLLLAAKD--------------------YASAISETGYLLKE---- 119 (409)
Q Consensus 70 ~~~~A~~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~al~~---- 119 (409)
++++|+.++.+ ++...|.. ..++..+|.++...|+ +++|+..+.+++.+
T Consensus 102 ~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 102 NFDEAIVCCQR-HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp CHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 66665432 5689999999999999 99999999999887
Q ss_pred --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH
Q 043837 120 --DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK 194 (409)
Q Consensus 120 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~ 194 (409)
.|....++..+|.++...|++++|+.++++++.+.+. ......++..++.++... |++++|+.+++
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~ 251 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL---------GEFETASEYYK 251 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc---------CChHHHHHHHH
Confidence 3334568899999999999999999999999987543 333444677777777766 99999999999
Q ss_pred HHHccCCCC--ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHH
Q 043837 195 AALALDPNH--TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLK 266 (409)
Q Consensus 195 ~al~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~ 266 (409)
+++.+.|.. ......++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++..+|++++|+.+++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999887652 22237789999999999999999999999999885543 7789999999999999999999999
Q ss_pred HHHhhCCCc------HHHHHHHHHHHHHHh
Q 043837 267 SAAQQSPQD------MNIREALMRAEKALK 290 (409)
Q Consensus 267 ~al~~~p~~------~~~~~~l~~~~~~~~ 290 (409)
+++++.+.. ..+...+..+...+.
T Consensus 332 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 332 KHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999985433 334445555554444
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.94 E-value=2.6e-24 Score=184.72 Aligned_cols=211 Identities=18% Similarity=0.108 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY 134 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 134 (409)
...++..|..++..|++++|+.++++ ++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRK-ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 56677888888899999999999998 88899999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837 135 YYLADHDVAQRHFQKGLR--LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL 212 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 212 (409)
...|++++|+.++++++. ..|.+.. ++..++.++... |++++|+.+++++++..|. ...++.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~----~~~~~~ 179 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSR---VFENLGLVSLQM---------KKPAQAKEYFEKSLRLNRN----QPSVAL 179 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCSC----CHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCcc----cHHHHH
Confidence 999999999999999999 7777776 888888888877 9999999999999999998 677999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837 213 GLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL 282 (409)
Q Consensus 213 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 282 (409)
.+|.++...|++++|+..++++++..|.+..++..++.++...|++++|...+++++++.|+++.+...+
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876543
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=7.2e-25 Score=202.20 Aligned_cols=266 Identities=20% Similarity=0.137 Sum_probs=228.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHhCC
Q 043837 1 MKHYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQ-------LLQAQSTFDSALKLYDSG 69 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~~~~~~~~~~a~~~~~~~ 69 (409)
.|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+.+++.. ......++..+..+...|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4899999999999999999987 58999999999999999999999998875 455677888999999999
Q ss_pred CchHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHhhC------
Q 043837 70 EYTKPLEYIDKVVLVF------SPACSKAKLLKVKLLLAAKD-----------------YASAISETGYLLKED------ 120 (409)
Q Consensus 70 ~~~~A~~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~-----------------~~~A~~~~~~al~~~------ 120 (409)
++++|+.++.+ ++.. .|....++..+|.++...|+ +++|+..+++++++.
T Consensus 141 ~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 141 RFDEAAICCER-HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp CHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999998 6666 56677899999999999999 999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Q 043837 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH---SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAAL 197 (409)
Q Consensus 121 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 197 (409)
+....++..+|.++...|++++|+.++++++.+.+.. .....++..++.++... |++++|+.++++++
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 290 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL---------GQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC---------cCHHHHHHHHHHHH
Confidence 2344588999999999999999999999999976543 22333566666666555 99999999999999
Q ss_pred ccCCCCc--cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh------cHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837 198 ALDPNHT--AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE------LIEALVQRGEAKLLTEDWEGAVEDLKSAA 269 (409)
Q Consensus 198 ~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al 269 (409)
.+.+... .....++..+|.++...|++++|+.++++++.+.+. ...++..+|.++..+|++++|+.++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9877422 124678999999999999999999999999988553 35689999999999999999999999999
Q ss_pred hhCCCcH
Q 043837 270 QQSPQDM 276 (409)
Q Consensus 270 ~~~p~~~ 276 (409)
++.+...
T Consensus 371 ~~~~~~~ 377 (411)
T 4a1s_A 371 QLAXXXX 377 (411)
T ss_dssp HHCCHHH
T ss_pred HHHhhcc
Confidence 9987643
No 38
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.94 E-value=8.2e-25 Score=185.02 Aligned_cols=187 Identities=16% Similarity=0.126 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDE-NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l 167 (409)
++..++.+|.+++..|++++|+..|+++++++| .+..+++.+|.++..+|++++|+.+|++++..+|++.. ++..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN---AYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH---HHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH---HHHHH
Confidence 344455555555555555555555555555554 44444445555555555555555555555555555444 44444
Q ss_pred HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh--cH
Q 043837 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH---NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE--LI 242 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~ 242 (409)
+.++... |++++|+..+++++++.|+++.. ...++..+|.++...|++++|+..|+++++++|+ ++
T Consensus 83 ~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 153 (228)
T 4i17_A 83 SAAYRDM---------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT 153 (228)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHc---------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH
Confidence 4444444 55555555555555555542210 0133455555555555555555555555555555 45
Q ss_pred HHHHHHHHHHHhccCH---------------------------HHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 243 EALVQRGEAKLLTEDW---------------------------EGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~---------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
.++..+|.++...|+. ++|+.+|+++++++|++..+...+..+..
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 154 DALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 5555555555555444 99999999999999999998888877654
No 39
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=1.2e-24 Score=194.42 Aligned_cols=265 Identities=17% Similarity=0.106 Sum_probs=222.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhCC
Q 043837 1 MKHYSEALDDLNTAIEADPTLS----EAYFHRGSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDSG 69 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~ 69 (409)
.|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+.+++... .........+..+...|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 4899999999999999999984 678899999999999999999999887642 33566788899999999
Q ss_pred CchHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh----
Q 043837 70 EYTKPLEYIDKVVLVFSPAC------SKAKLLKVKLLLAAKD--------------------YASAISETGYLLKE---- 119 (409)
Q Consensus 70 ~~~~A~~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~al~~---- 119 (409)
++++|+..+.+ ++...|.. ..++..+|.++...|+ +++|+..+++++.+
T Consensus 98 ~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~ 176 (338)
T 3ro2_A 98 NFDEAIVCCQR-HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176 (338)
T ss_dssp CHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 66554332 4589999999999999 99999999999876
Q ss_pred --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHH
Q 043837 120 --DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFK 194 (409)
Q Consensus 120 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~ 194 (409)
.+....++..+|.++...|++++|+.++++++.+.+. ......++..++.++... |++++|+.+++
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~ 247 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL---------GEFETASEYYK 247 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHH
Confidence 2334558899999999999999999999999987543 333444777788887777 99999999999
Q ss_pred HHHccCCCC--ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHH
Q 043837 195 AALALDPNH--TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLK 266 (409)
Q Consensus 195 ~al~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~ 266 (409)
+++.+.+.. +.....++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999876642 22247788999999999999999999999999876543 5688999999999999999999999
Q ss_pred HHHhhCCCc
Q 043837 267 SAAQQSPQD 275 (409)
Q Consensus 267 ~al~~~p~~ 275 (409)
+++++.++.
T Consensus 328 ~a~~~~~~~ 336 (338)
T 3ro2_A 328 KHLEISREV 336 (338)
T ss_dssp HHHHC----
T ss_pred HHHHHHHhh
Confidence 999987753
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.94 E-value=1e-23 Score=177.36 Aligned_cols=210 Identities=16% Similarity=0.073 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY 135 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 135 (409)
..++..+..++..|++++|+..+.+ ++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIED-ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3445555556666667777777777 788899999999999999999999999999999999999999999999999999
Q ss_pred hc-CChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837 136 YL-ADHDVAQRHFQKGLR--LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL 212 (409)
Q Consensus 136 ~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 212 (409)
.. |++++|+..+++++. ..|.+.. ++..++.++... |++++|+..++++++..|+ +..++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~ 151 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYI---ANLNKGICSAKQ---------GQFGLAEAYLKRSLAAQPQ----FPPAFK 151 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CchHHH
Confidence 99 999999999999999 5555555 888888888877 9999999999999999998 677999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCh-hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837 213 GLCKVLVKLGRGKDALSSCTEALNINE-ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL 282 (409)
Q Consensus 213 ~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 282 (409)
.+|.++...|++++|+..++++++..| .+..++..++.++...|++++|..+++.+++..|+++.+...+
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999999999999999999 9999999999999999999999999999999999998876554
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=1.6e-23 Score=182.23 Aligned_cols=232 Identities=15% Similarity=0.137 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHhhCCCcHHHH
Q 043837 18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYTKPLEYIDKVVLVFSPACSKAK 93 (409)
Q Consensus 18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~p~~~~~~ 93 (409)
+|+++.+++.+|.++...+++++|+..+.+++. .......+..+..+.. .+++++|+.+|.+ ++..+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~-a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAK-ACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH-HHHCC--CHHHH
Confidence 588999999999999999999999999999888 4456778889999999 9999999999999 66654 78999
Q ss_pred HHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837 94 LLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQRHFQKGLRLDPEHSELKKAYF 165 (409)
Q Consensus 94 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 165 (409)
+.+|.++.. .+++++|+..|+++++.+ ++.+++.+|.+|.. .+++++|+.+|+++++.. +.. ++.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~---a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGD---GCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHH---HHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHH---HHH
Confidence 999999999 999999999999999974 89999999999999 999999999999999976 444 788
Q ss_pred HHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhc
Q 043837 166 ALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEALNI 237 (409)
Q Consensus 166 ~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 237 (409)
.++.++.. . +++++|+.+|+++++.. ...++.++|.+|.. .+++++|+.+++++++.
T Consensus 151 ~lg~~~~~~~~~~---------~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 151 ILGSLYDAGRGTP---------KDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHTSSSC---------CCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCC---------CCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 88888876 5 99999999999999873 35689999999999 99999999999999998
Q ss_pred ChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCCcHH
Q 043837 238 NEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 238 ~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
.| +.++..+|.+|.. .+++++|+.+|++++++.|++..
T Consensus 216 ~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 216 EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 66 7899999999999 99999999999999999987543
No 42
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=7.7e-24 Score=185.45 Aligned_cols=276 Identities=15% Similarity=0.119 Sum_probs=220.8
Q ss_pred HHHHHHcCChHHHhHHHHHHHHHH-H-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCH
Q 043837 29 GSVLRQLCRVKARNSVAEKELSQL-L-QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY 106 (409)
Q Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~-~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 106 (409)
.+-.+..|+++.|+..+.+..... . .....+..+..++..|+++.|+..++. .+|....++..++..+...+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345678999999999887654422 2 234557778899999999999998865 2666788899999999999999
Q ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC
Q 043837 107 ASAISETGYLLKE--DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG 184 (409)
Q Consensus 107 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 184 (409)
++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |++.. ++..++.++..+ |
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~---~~~~l~~~~~~~---------g 144 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE---CMAMTVQILLKL---------D 144 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH---HHHHHHHHHHHT---------T
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH---HHHHHHHHHHHC---------C
Confidence 9999999999976 699999999999999999999999999998 78887 888899988888 9
Q ss_pred CHHHHHHHHHHHHccCCCCccchHHHHHHHH--HHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHH
Q 043837 185 KLRVAVEDFKAALALDPNHTAHNVHLYLGLC--KVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV 262 (409)
Q Consensus 185 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 262 (409)
++++|+..++++++.+|++ .......+ .++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+
T Consensus 145 ~~~~A~~~l~~~~~~~p~~----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDEDA----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999984 32322222 33345589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC-CCchHHHHHHHHH
Q 043837 263 EDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-VDNREEAENKFRE 341 (409)
Q Consensus 263 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~-~~~~~~a~~~~~~ 341 (409)
..|+++++++|+++++...+..+...+++. .+.+.+.+++ +...+|+.. .....+.+..|.+
T Consensus 221 ~~l~~al~~~p~~~~~l~~l~~~~~~~g~~----------------~eaa~~~~~~-~~~~~P~~~~~~d~~~~~~~fd~ 283 (291)
T 3mkr_A 221 GVLQEALDKDSGHPETLINLVVLSQHLGKP----------------PEVTNRYLSQ-LKDAHRSHPFIKEYRAKENDFDR 283 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCC----------------HHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999998888777665541 2223333343 566677652 2233455556666
Q ss_pred HHHHH
Q 043837 342 IAAAY 346 (409)
Q Consensus 342 i~~ay 346 (409)
+...|
T Consensus 284 ~~~~~ 288 (291)
T 3mkr_A 284 LVLQY 288 (291)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55554
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=5.2e-25 Score=191.51 Aligned_cols=202 Identities=16% Similarity=0.091 Sum_probs=164.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL 137 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 137 (409)
++..|..++..|++++|+..|.+ ++..+|.++.++..+|.++...|++++|+.+|+++++++|.++.++..+|.++...
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQ-ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 33444444445556666666666 77788999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHH
Q 043837 138 ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKV 217 (409)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~ 217 (409)
|++++|+.++++++.++|++.. ....+... ... +++++|+..+.+++...|.+. .. ..++.+
T Consensus 125 g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~-~~~---------~~~~~A~~~~~~~~~~~~~~~----~~-~~~~~~ 186 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDDPNDPF---RSLWLYLA-EQK---------LDEKQAKEVLKQHFEKSDKEQ----WG-WNIVEF 186 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH---HHHHHHHH-HHH---------HCHHHHHHHHHHHHHHSCCCS----TH-HHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCChH---HHHHHHHH-HHh---------cCHHHHHHHHHHHHhcCCcch----HH-HHHHHH
Confidence 9999999999999999998875 33333322 333 899999999999999888743 23 447777
Q ss_pred HHHcCChhHHHHHHHHHHhcChh----cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHH
Q 043837 218 LVKLGRGKDALSSCTEALNINEE----LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNI 278 (409)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 278 (409)
+...++.++|+..+.+++...|. ++.++..+|.++...|++++|+..|+++++++|++...
T Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 88888889999999999888774 37889999999999999999999999999999976553
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=6.4e-24 Score=173.20 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY 135 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 135 (409)
..++..|..+..+|++++|+..|++ +++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKK-VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3445566666667777888888888 899999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC 215 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la 215 (409)
..++++.|+..+.+++.++|++.. ++..++.++... |++++|+..|+++++++|+ ++.++.++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~---~~~~lg~~~~~~---------g~~~~A~~~~~~~l~~~p~----~~~~~~~lg 148 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYAD---AYYKLGLVYDSM---------GEHDKAIEAYEKTISIKPG----FIRAYQSIG 148 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchH---HHHHHHHHHHHh---------CCchhHHHHHHHHHHhcch----hhhHHHHHH
Confidence 999999999999999999999998 899999999888 9999999999999999999 778999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837 216 KVLVKLGRGKDALSSCTEALNINEELIE 243 (409)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al~~~p~~~~ 243 (409)
.++..+|++++|+.+|+++++++|+++.
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999998754
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=4.6e-24 Score=200.00 Aligned_cols=204 Identities=14% Similarity=0.066 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEY-TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA 133 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 133 (409)
+..++.+|..++..+++ ++|+.+|.+ +++.+|.++.++..+|.++...|++++|+.+|+++++++|+ ..++..+|.+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~-al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~ 179 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSK-AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence 34445555556666777 788888888 88999999999999999999999999999999999999999 7999999999
Q ss_pred HHhc---------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC---
Q 043837 134 YYYL---------ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP--- 201 (409)
Q Consensus 134 ~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--- 201 (409)
+..+ |++++|+..|++++.++|++.. +|..++.++...-.... ...+++++|+..|+++++++|
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR---SWYILGNAYLSLYFNTG-QNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHhCCCcc
Confidence 9999 9999999999999999999998 89999988865400000 012679999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043837 202 NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSA 268 (409)
Q Consensus 202 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 268 (409)
+ ++.+++++|.++..+|++++|+..|+++++++|+++.++..++.++..+|++++|+..+.+.
T Consensus 256 ~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 S----NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp G----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred c----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6 78899999999999999999999999999999999999999999999999999999876543
No 46
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.9e-23 Score=184.95 Aligned_cols=231 Identities=10% Similarity=0.032 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------hHHHHH
Q 043837 5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEY-------TKPLEY 77 (409)
Q Consensus 5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~ 77 (409)
++|+..|++++..+|+++.+|+.+|.++...++. +...|++ ++|+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~--------------------------l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL--------------------------LAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------------HHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh--------------------------hhhccchhhcccchHHHHHH
Confidence 6899999999999999999999999988654220 2234554 889999
Q ss_pred HHHHHHh-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837 78 IDKVVLV-FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE-ALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155 (409)
Q Consensus 78 ~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 155 (409)
|++ ++. .+|.+..+|..+|.++...|++++|+..|+++++++|.++. +|..++.++...|++++|+..|+++++..|
T Consensus 87 ~~r-Al~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 87 YER-AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHH-HHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHH-HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 988 787 79999999999999999999999999999999999999887 999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
.+.. ++...+.+... ..|++++|+..|+++++..|+ +..+|..++.++...|++++|+..|++++
T Consensus 166 ~~~~---~~~~~a~~~~~--------~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 166 TRHH---VYVTAALMEYY--------CSKDKSVAFKIFELGLKKYGD----IPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp CCTH---HHHHHHHHHHH--------TSCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8876 55544333211 139999999999999999999 67899999999999999999999999999
Q ss_pred hc---Chh-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 236 NI---NEE-LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 236 ~~---~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
.. .|+ ...+|..++..+...|++++|...++++++..|++..
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 95 664 7889999999999999999999999999999998654
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=2.1e-24 Score=202.27 Aligned_cols=212 Identities=19% Similarity=0.186 Sum_probs=192.2
Q ss_pred chHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837 71 YTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY-ASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQK 149 (409)
Q Consensus 71 ~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 149 (409)
+++++..+.+ +....|..+.+++.+|.++...|++ ++|+..|+++++++|+++.+|+.+|.+|...|++++|+.+|++
T Consensus 84 ~~~al~~l~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEE-VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHH-HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667777776 7788899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc--------
Q 043837 150 GLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-------- 221 (409)
Q Consensus 150 al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-------- 221 (409)
++.++|+ .. ++..++.++.....+......|++++|+..|+++++++|+ +..+|.++|.++...
T Consensus 163 al~~~p~-~~---~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 163 ALTHCKN-KV---SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL----DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHTTCCC-HH---HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHhhCCC-HH---HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999 45 8888888775432222233338999999999999999999 778999999999999
Q ss_pred CChhHHHHHHHHHHhcCh---hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 222 GRGKDALSSCTEALNINE---ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 222 ~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
|++++|+.+|+++++++| +++.+++.+|.++..+|++++|+..|+++++++|++..++..+..+...+++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999998888777664
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.93 E-value=7.8e-25 Score=213.00 Aligned_cols=174 Identities=16% Similarity=0.190 Sum_probs=165.3
Q ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837 85 FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164 (409)
Q Consensus 85 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 164 (409)
..|+++.++.++|.++..+|++++|+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++.. ++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---a~ 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---AY 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (409)
.++|.++..+ |++++|+..|+++++++|+ +..++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus 81 ~nLg~~l~~~---------g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 81 SNMGNTLKEM---------QDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999888 9999999999999999999 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
+.++|.++..++++++|.+.+++++++.|+
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999987655
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=6e-24 Score=184.76 Aligned_cols=246 Identities=15% Similarity=0.086 Sum_probs=210.8
Q ss_pred CChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHH
Q 043837 2 KHYSEALDDLNTAIEA----DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLE 76 (409)
Q Consensus 2 g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~ 76 (409)
+++++|+..|+++++. +|.++.+++.+|.++...|++++|+..+.+++...+ ....++..|..+...|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 5789999999999998 356788999999999999999999999999988543 46778889999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 043837 77 YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE 156 (409)
Q Consensus 77 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 156 (409)
+|.+ ++..+|.++.++..+|.++...|++++|+..++++++++|++......++.+ ...|++++|+..+++++...|+
T Consensus 99 ~~~~-al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 99 AFDS-VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHH-HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHH-HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCc
Confidence 9999 8999999999999999999999999999999999999999998777666655 6679999999999999999988
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 157 HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
+.. .+. ++.++ +..++.++|+..+.+++...|........++..+|.++...|++++|+..|++++.
T Consensus 177 ~~~---~~~-~~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 177 EQW---GWN-IVEFY---------LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp CST---HHH-HHHHH---------TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chH---HHH-HHHHH---------HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 765 332 33333 33488999999999999988863322478999999999999999999999999999
Q ss_pred cChhcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837 237 INEELIEALVQRGEAKLLTEDWEGAVEDL 265 (409)
Q Consensus 237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 265 (409)
++|++... .+.++..++++++|++.+
T Consensus 244 ~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred CCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99977544 377889999999999887
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=4.8e-24 Score=181.81 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837 21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQ-LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL 99 (409)
Q Consensus 21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~ 99 (409)
.+.+++.+|.++...|++++|+..+.+.+.. +......+..+..+...|++++|+..+.+ ++...|.+..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDK-ALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCcchHHHHHHHHH
Confidence 3567888899999999999999888888774 33466777888889999999999999998 889999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 043837 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED 179 (409)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 179 (409)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|++.. ++..++.++...
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~----- 172 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE---ARFQFGMCLANE----- 172 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH-----
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHc-----
Confidence 999999999999999999999999999999999999999999999999999999999988 889999998888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837 180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE 256 (409)
Q Consensus 180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 256 (409)
|++++|+..++++++..|+ ...++..+|.++...|++++|+.+++++++++|++..++..++.+....+
T Consensus 173 ----~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 173 ----GMLDEALSQFAAVTEQDPG----HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp ----TCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred ----CCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999998 67799999999999999999999999999999999999998887765443
No 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.92 E-value=4.5e-23 Score=178.13 Aligned_cols=202 Identities=15% Similarity=0.119 Sum_probs=172.5
Q ss_pred HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
...+|.++..++.+|.+++..|++++|+..|+++++.+|++ +.+++.+|.+++.+|++++|+..|++++...|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 44578899999999999999999999999999999999999 899999999999999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH--------------HHHHHHHHHcCChh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY--------------LGLCKVLVKLGRGK 225 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~la~~~~~~~~~~ 225 (409)
...+++.++.++..... ......|++++|+..|+++++..|+++. ...++ +.+|.+|...|+++
T Consensus 88 ~~~a~~~lg~~~~~~~~-~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSP-PYELDQTDTRKAIEAFQLFIDRYPNHEL-VDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTSCCHHHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHHHHCcCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 66688999988877000 0000029999999999999999998654 23333 88999999999999
Q ss_pred HHHHHHHHHHhcChh---cHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 226 DALSSCTEALNINEE---LIEALVQRGEAKLLT----------EDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 226 ~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
+|+..|+++++..|+ .+.+++.+|.+|..+ |++++|+..|+++++..|+++.+......+.
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999999998 678999999999987 9999999999999999999976655544433
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=8.4e-23 Score=175.27 Aligned_cols=216 Identities=15% Similarity=0.035 Sum_probs=198.5
Q ss_pred HhCCCC-HHHHHHHHHHHHHcCChHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHH
Q 043837 16 EADPTL-SEAYFHRGSVLRQLCRVKARNSVAEKELSQL-LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAK 93 (409)
Q Consensus 16 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~ 93 (409)
..+|.. +.+++.+|.++...|++++|+..+.+.+... .....++..+..+...|++++|+..+.+ ++...|.+..++
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~ 108 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK-ALASDSRNARVL 108 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCcHHHH
Confidence 346665 7889999999999999999999999988753 3466778899999999999999999999 899999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837 94 LLKVKLLLAAKDYASAISETGYLLK--EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL 171 (409)
Q Consensus 94 ~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 171 (409)
..+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+.++++++..+|.+.. ++..++.++
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~ 185 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS---VALEMADLL 185 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH---HHHHHHHHH
Confidence 9999999999999999999999999 88989999999999999999999999999999999999988 888898888
Q ss_pred HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHH
Q 043837 172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR 248 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (409)
... |++++|+..++++++..|. ...++..++.++...|++++|+.+++++++..|+++.+...+
T Consensus 186 ~~~---------g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 186 YKE---------REYVPARQYYDLFAQGGGQ----NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHT---------TCHHHHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHc---------CCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 877 9999999999999999998 677899999999999999999999999999999998776543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=4e-22 Score=167.61 Aligned_cols=215 Identities=14% Similarity=-0.010 Sum_probs=197.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 17 ADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLL 95 (409)
Q Consensus 17 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~ 95 (409)
.+|+++.++..+|.++...|++++|+..+.+.+...+ ....++..+..+...|++++|+.++.+ ++...|.+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ-ALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCChHHHHH
Confidence 4688899999999999999999999999999887543 356778889999999999999999999 88999999999999
Q ss_pred HHHHHHHc-cCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 043837 96 KVKLLLAA-KDYASAISETGYLLK--EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK 172 (409)
Q Consensus 96 ~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 172 (409)
+|.++... |++++|+..++++++ .+|.+..++..+|.++...|++++|+..+++++..+|++.. ++..++.++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~ 158 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP---AFKELARTKM 158 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch---HHHHHHHHHH
Confidence 99999999 999999999999999 67777899999999999999999999999999999999988 8999999988
Q ss_pred HHHHHhhHHhcCCHHHHHHHHHHHHccCC-CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHH
Q 043837 173 KTKSAEDNVSKGKLRVAVEDFKAALALDP-NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR 248 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (409)
.. |++++|+..++++++..| . ....+..++.++...|++++|..+++.+++.+|+++.+...+
T Consensus 159 ~~---------~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 159 LA---------GQLGDADYYFKKYQSRVEVL----QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HH---------TCHHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Hc---------CCHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 88 999999999999999999 7 666888999999999999999999999999999998876554
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.8e-22 Score=185.53 Aligned_cols=263 Identities=19% Similarity=0.116 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh------CC
Q 043837 19 PTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF------SP 87 (409)
Q Consensus 19 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p 87 (409)
+....+++.+|.++...|++++|+..+.+++...+ ....++..+..++..|++++|+.++++ ++.. .|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH-DLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHhccccH
Confidence 34567889999999999999999999999988432 246678899999999999999999998 5544 34
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCC--------------------hH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLHRGRAYYYLAD--------------------HD 141 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~ 141 (409)
....++..+|.++...|++++|+..+++++++.|.. ..++..+|.++...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 557889999999999999999999999999987643 4488999999999999 99
Q ss_pred HHHHHHHHHHccC---CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--cchHHHHHHHHH
Q 043837 142 VAQRHFQKGLRLD---PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--AHNVHLYLGLCK 216 (409)
Q Consensus 142 ~A~~~~~~al~~~---p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~la~ 216 (409)
+|+.++++++.+. ++......++..++.++... |++++|+.++++++++.+... .....++.++|.
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 235 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL---------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999998762 33444445788888888888 999999999999999866532 224568999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc------HHHHHHHHH
Q 043837 217 VLVKLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD------MNIREALMR 284 (409)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~ 284 (409)
++...|++++|+.++++++.+.|.. ..++..+|.++...|++++|+.++++++++.+.. ..+...++.
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999999999999999987765 7889999999999999999999999999986554 335555666
Q ss_pred HHHHHhh
Q 043837 285 AEKALKM 291 (409)
Q Consensus 285 ~~~~~~~ 291 (409)
+....+.
T Consensus 316 ~~~~~g~ 322 (406)
T 3sf4_A 316 AYTALGN 322 (406)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 6555544
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=7.3e-22 Score=166.83 Aligned_cols=213 Identities=12% Similarity=0.103 Sum_probs=177.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHH--HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQL--LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLL 95 (409)
Q Consensus 18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~ 95 (409)
.|.++.+++.+|.++...|++++|+..+.+++... ......+..|..++..|++++|+..+++ ++..+|.++.++..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~ 81 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDI-AIKKNYNLANAYIG 81 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTCSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHH-HHHhCcchHHHHHH
Confidence 35667899999999999999999999999988865 4566777789999999999999999998 88999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--cHHHHHHHHH
Q 043837 96 KVKLLLAAKDYASAISETGYLLKEDENNL-------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPE--HSELKKAYFA 166 (409)
Q Consensus 96 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~ 166 (409)
+|.++..+|++++|+..++++++++|+++ .++..+|.++..+|++++|+..|+++++++|+ +.. ++..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD---ALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH---HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH---HHHH
Confidence 99999999999999999999999999988 66889999999999999999999999999998 777 8888
Q ss_pred HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837 167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV 246 (409)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (409)
++.++... +...++++..+.+.+ ... ..+......+.+++|+.+++++++++|+++.+..
T Consensus 159 l~~~~~~~--------------~~~~~~~a~~~~~~~----~~~--~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 218 (228)
T 4i17_A 159 LGVLFYNN--------------GADVLRKATPLASSN----KEK--YASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ 218 (228)
T ss_dssp HHHHHHHH--------------HHHHHHHHGGGTTTC----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHH--------------HHHHHHHHHhcccCC----HHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 88888655 344567777776663 222 2334455567789999999999999999999998
Q ss_pred HHHHHHHh
Q 043837 247 QRGEAKLL 254 (409)
Q Consensus 247 ~la~~~~~ 254 (409)
.++.+...
T Consensus 219 ~l~~i~~~ 226 (228)
T 4i17_A 219 MQDQVKAM 226 (228)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88877543
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=9.9e-23 Score=187.86 Aligned_cols=246 Identities=16% Similarity=0.127 Sum_probs=209.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh------CCC
Q 043837 20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF------SPA 88 (409)
Q Consensus 20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p~ 88 (409)
.....++.+|.++...|++++|+..+.+++...+ ....++..+..++..|++++|+.++++ ++.. .|.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH-DLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHccCchH
Confidence 3456678899999999999999999999988422 235678899999999999999999999 6665 567
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhcCC-----------------hHHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKE------DENNLEALLHRGRAYYYLAD-----------------HDVAQR 145 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~A~~ 145 (409)
...++..+|.++...|++++|+..+++++++ .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7889999999999999999999999999998 55667789999999999999 999999
Q ss_pred HHHHHHccC---CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--cchHHHHHHHHHHHHH
Q 043837 146 HFQKGLRLD---PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--AHNVHLYLGLCKVLVK 220 (409)
Q Consensus 146 ~~~~al~~~---p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~la~~~~~ 220 (409)
++++++.+. ++......++..++.++... |++++|+.++++++++.+... .....++.++|.++..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLL---------GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 999998764 23333444777777777776 999999999999999877522 1234588999999999
Q ss_pred cCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 221 LGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
.|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++++.++.
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 999999999999999987754 7889999999999999999999999999986543
No 57
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.90 E-value=2.2e-21 Score=168.85 Aligned_cols=233 Identities=12% Similarity=0.043 Sum_probs=208.4
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043837 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVL 83 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 83 (409)
.++|+.+++++|.++|++..+|..++.++..++. .++++++.+++. ++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-------------------------------~~~~eeL~~~~~-~L 96 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPN-------------------------------RNLYDELDWCEE-IA 96 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-------------------------------SCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-------------------------------ccHHHHHHHHHH-HH
Confidence 3689999999999999999999999999887762 256677777777 88
Q ss_pred hhCCCcHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHccC
Q 043837 84 VFSPACSKAKLLKVKLL----LAA---KDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD--VAQRHFQKGLRLD 154 (409)
Q Consensus 84 ~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~ 154 (409)
..+|.+..+|..++.++ ... +++++++..+.++++.+|.+..+|..++.+....+.++ ++++++.+++..+
T Consensus 97 ~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 99999999999999999 777 78999999999999999999999999999999999999 9999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC------HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhH-H
Q 043837 155 PEHSELKKAYFALKNLLKKTKSAEDNVSKGK------LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKD-A 227 (409)
Q Consensus 155 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A 227 (409)
|.+.. +|...+.++..+ +. ++++++++++++.++|+ +..+|+.++.++...|+..+ .
T Consensus 177 ~~N~s---AW~~R~~ll~~l---------~~~~~~~~~~eEl~~~~~aI~~~p~----n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 177 LKNNS---AWSHRFFLLFSK---------KHLATDNTIDEELNYVKDKIVKCPQ----NPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp TTCHH---HHHHHHHHHHSS---------GGGCCHHHHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTCCGGGG
T ss_pred CCCHH---HHHHHHHHHHhc---------cccchhhhHHHHHHHHHHHHHhCCC----CccHHHHHHHHHHhcCCChHHH
Confidence 99999 888888887766 55 99999999999999999 77799999999999998655 5
Q ss_pred HHHHHHHHhcC---hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh-hCCCcHHHHHHHHH
Q 043837 228 LSSCTEALNIN---EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ-QSPQDMNIREALMR 284 (409)
Q Consensus 228 ~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~ 284 (409)
...+.+++.++ |.++.++..++.++.+.|+.++|++.|+++.+ ++|-....+.....
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 56778787776 88999999999999999999999999999997 89998888776543
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=7.5e-23 Score=180.97 Aligned_cols=247 Identities=13% Similarity=0.032 Sum_probs=195.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh---
Q 043837 18 DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ---------LLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF--- 85 (409)
Q Consensus 18 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 85 (409)
+|..+.++..+|.++...|++++|+..+.+++.. ..........+..+...|++++|+.++.+ ++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND-ALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHH
Confidence 5677889999999999999999999999998873 44566778899999999999999999999 5554
Q ss_pred -----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 86 -----SPACSKAKLLKVKLLLAAKDYASAISETGYLLKED--------ENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 86 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
.|....++..+|.++...|++++|+..+++++++. |....++..+|.++...|++++|+.++++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999874 55567889999999999999999999999998
Q ss_pred c-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC---------Ccc--chHHHHHHHHH
Q 043837 153 L-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN---------HTA--HNVHLYLGLCK 216 (409)
Q Consensus 153 ~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~--~~~~~~~~la~ 216 (409)
+ .++++....++..++.++... |++++|+.++++++++.|. ... .....+..++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQ---------GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG 252 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcC
Confidence 7 133444444888999998888 9999999999999976432 110 12334455566
Q ss_pred HHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 217 VLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
.+...+.+.+|+..+.+++...|..+.++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 253 KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6667788889999999999999999999999999999999999999999999998775
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=2.3e-22 Score=195.71 Aligned_cols=160 Identities=16% Similarity=0.235 Sum_probs=148.2
Q ss_pred HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837 66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 145 (409)
..+|++++|+.+|++ +++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|++
T Consensus 20 ~~~G~~~eAi~~~~k-Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~ 98 (723)
T 4gyw_A 20 REQGNIEEAVRLYRK-ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ 98 (723)
T ss_dssp HHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 333445566666666 8888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChh
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGK 225 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~ 225 (409)
.|+++++++|++.. ++.+++.++... |++++|+..|+++++++|+ +..++.++|.++..+++++
T Consensus 99 ~~~kAl~l~P~~~~---a~~~Lg~~~~~~---------g~~~eAi~~~~~Al~l~P~----~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 99 CYTRAIQINPAFAD---AHSNLASIHKDS---------GNIPEAIASYRTALKLKPD----FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----ChHHHhhhhhHHHhcccHH
Confidence 99999999999999 999999999888 9999999999999999999 7889999999999999999
Q ss_pred HHHHHHHHHHhcChhcH
Q 043837 226 DALSSCTEALNINEELI 242 (409)
Q Consensus 226 ~A~~~~~~al~~~p~~~ 242 (409)
+|++.+++++++.|+..
T Consensus 163 ~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQL 179 (723)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhHH
Confidence 99999999999877643
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=7.9e-21 Score=165.10 Aligned_cols=218 Identities=15% Similarity=0.132 Sum_probs=195.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCch
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQ----LCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYT 72 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~ 72 (409)
.|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+..+.+++... .....+..+..+.. .++++
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHH
Confidence 4789999999999999 7889999999999999 999999999999988754 56778889999999 99999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHH
Q 043837 73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQ 144 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~ 144 (409)
+|+..|++ ++.. .++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+
T Consensus 96 ~A~~~~~~-a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 96 KALQYYSK-ACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp HHHHHHHH-HHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHH-HHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998 6655 488999999999999 999999999999999976 68899999999999 99999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK 220 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~ 220 (409)
.+|+++++.. +.. ++..++.++.. . +++++|+.+|+++++..| ..++.++|.+|..
T Consensus 171 ~~~~~a~~~~--~~~---a~~~lg~~~~~g~~~~---------~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 171 ASYDKACDLK--DSP---GCFNAGNMYHHGEGAT---------KNFKEALARYSKACELEN------GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHHHTT--CHH---HHHHHHHHHHHTCSSC---------CCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHT
T ss_pred HHHHHHHHCC--CHH---HHHHHHHHHHcCCCCC---------ccHHHHHHHHHHHHhCCC------HHHHHHHHHHHHc
Confidence 9999999874 445 78888888877 6 999999999999999855 4588999999999
Q ss_pred ----cCChhHHHHHHHHHHhcChhcHHHHH
Q 043837 221 ----LGRGKDALSSCTEALNINEELIEALV 246 (409)
Q Consensus 221 ----~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (409)
.+++++|+.+|++++++.|.++..++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999887655443
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=4.8e-22 Score=171.61 Aligned_cols=205 Identities=20% Similarity=0.270 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLH 129 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 129 (409)
...+..|..++..|+|++|+..|++ ++...|.+ +.+++.+|.++...|++++|+..|+++++.+|++ +.+++.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKA-VFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-HHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3445555556666677778888877 88888888 8999999999999999999999999999998854 678999
Q ss_pred HHHHHHh--------cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH-----HHHHHhhHHhcCCHHHHHHHHHHH
Q 043837 130 RGRAYYY--------LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLK-----KTKSAEDNVSKGKLRVAVEDFKAA 196 (409)
Q Consensus 130 l~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~a 196 (409)
+|.++.. +|++++|+..|++++..+|++.....++..+..+.. ....+..++..|++++|+..|+++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999 999999999999999999998764434411111110 122344445559999999999999
Q ss_pred HccCCCCccchHHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcChhcH---HHHHHHHHHHHhccCHHHHH
Q 043837 197 LALDPNHTAHNVHLYLGLCKVLVKL----------GRGKDALSSCTEALNINEELI---EALVQRGEAKLLTEDWEGAV 262 (409)
Q Consensus 197 l~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~ 262 (409)
++..|+++. ...+++.+|.++..+ |++++|+..|+++++..|+++ .+...++.++..+++++++.
T Consensus 175 l~~~p~~~~-~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 175 FDAYPDTPW-ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHCTTSTT-HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHCCCCch-HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999998664 677999999999987 899999999999999999884 56666777777777766543
No 62
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.89 E-value=7.9e-22 Score=164.02 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=133.0
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHc
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH----------------RGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
++..++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777777777 88888888888888888888888
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC--hhHHHHH
Q 043837 153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR--GKDALSS 230 (409)
Q Consensus 153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~ 230 (409)
++|++.. ++..++.++... |++++|+.+|+++++++|+ +..+++++|.+|...++ ...+...
T Consensus 83 ~~p~~~~---~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 83 KAPNNVD---CLEACAEMQVCR---------GQEKDALRMYEKILQLEAD----NLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HCTTCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888877 788888888777 8888888888888888888 66688888888776653 4556777
Q ss_pred HHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837 231 CTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285 (409)
Q Consensus 231 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 285 (409)
+.+++...|. ..+++.+|.++..+|++++|+.+|+++++++|+. .+...+.++
T Consensus 147 ~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 147 YKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 7777655443 3467778888888899999999999999998874 344444443
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=1.3e-21 Score=178.80 Aligned_cols=235 Identities=15% Similarity=0.100 Sum_probs=198.5
Q ss_pred HHHHHHHHHHcCChHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhC-------CCcH
Q 043837 25 YFHRGSVLRQLCRVKARNSVAEKELS-------QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFS-------PACS 90 (409)
Q Consensus 25 ~~~la~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------p~~~ 90 (409)
++.+|.++...|++++|+..+.+++. ....+..++..|..+...|++++|+.++.+ ++... +...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ-AYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHhCccchHHHH
Confidence 44599999999999999999999987 344678889999999999999999999999 66653 3345
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cC-CCcH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADHDVAQRHFQKGLR-----LD-PEHS 158 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~ 158 (409)
.++..+|.++..+|++++|+..+++++++.|... .++.++|.+|..+|++++|+.++++++. .+ |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 6899999999999999999999999998855432 4789999999999999999999999999 34 5544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHHHHHHHHHHHHcCC---hhHHHHHHHH
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHLYLGLCKVLVKLGR---GKDALSSCTE 233 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~ 233 (409)
. ++..++.++... |++++|+.++++++++.+. ++. ....+..++.++...++ +.+|+..+++
T Consensus 265 ~---~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 265 Q---AYFLITQIHYKL---------GKIDKAHEYHSKGMAYSQKAGDVI-YLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp H---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4 888999988888 9999999999999998543 221 33346789999999999 8888888887
Q ss_pred HHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 234 ALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 234 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
. ...|....++..+|.+|..+|++++|+.++++++++...
T Consensus 332 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 332 K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7 555677889999999999999999999999999987543
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=9e-22 Score=175.68 Aligned_cols=244 Identities=18% Similarity=0.134 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh------CCCcH
Q 043837 22 SEAYFHRGSVLRQLCRVKARNSVAEKELSQLL-----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVF------SPACS 90 (409)
Q Consensus 22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p~~~ 90 (409)
...++..|.++...|++++|+..+.+++...+ ........+..++..|++++|+.++.+ ++.. .|...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH-DLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhcccccHHHH
Confidence 45678889999999999999999999988432 246677899999999999999999998 5554 44567
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCC--------------------hHHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLHRGRAYYYLAD--------------------HDVAQ 144 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~A~ 144 (409)
.++..+|.++...|++++|+..+++++++.|.. ..++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 889999999999999999999999999886543 3488999999999999 99999
Q ss_pred HHHHHHHccC---CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC--ccchHHHHHHHHHHHH
Q 043837 145 RHFQKGLRLD---PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH--TAHNVHLYLGLCKVLV 219 (409)
Q Consensus 145 ~~~~~al~~~---p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~la~~~~ 219 (409)
.++++++.+. ++......++..++.++... |++++|+.++++++++.+.. +.....++..+|.++.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL---------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 9999988753 22333444777888888777 99999999999999876642 2224568999999999
Q ss_pred HcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 220 KLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
..|++++|+..+++++.+.+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887665 7889999999999999999999999999986543
No 65
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.89 E-value=8.9e-22 Score=172.77 Aligned_cols=251 Identities=9% Similarity=0.012 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837 6 EALDDLNTAIEADPTLSEAYFHRGSVLRQL---CRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV 82 (409)
Q Consensus 6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 82 (409)
+|.+++.++-+.-+.....+ .++.. +++++|...+.++ +..+...|++++|+..|.+ +
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~-a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLK-A 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHH-H
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHH-H
Confidence 56777777777665432221 11122 1466666665544 3456678999999999998 6
Q ss_pred HhhCC------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhc-CChHHHHHHHHH
Q 043837 83 LVFSP------ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLHRGRAYYYL-ADHDVAQRHFQK 149 (409)
Q Consensus 83 ~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~ 149 (409)
+...+ ..+.++..+|.+|..+|++++|+.+|++++++.|.. ..++..+|.+|... |++++|+.+|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 66532 236789999999999999999999999999987753 45789999999996 999999999999
Q ss_pred HHccCCCcH---HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc---hHHHHHHHHHHHHHcCC
Q 043837 150 GLRLDPEHS---ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH---NVHLYLGLCKVLVKLGR 223 (409)
Q Consensus 150 al~~~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~la~~~~~~~~ 223 (409)
++.+.|... ....++..++.++... |++++|+.+|++++++.|++... ...++.++|.++..+|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 214 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALD---------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC
Confidence 999877542 2234677788887777 99999999999999999886431 23478999999999999
Q ss_pred hhHHHHHHHHHHhcChhcHHH-----HHHHHHHHH--hccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 224 GKDALSSCTEALNINEELIEA-----LVQRGEAKL--LTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
+++|+.+|+++++++|+.... +..++.++. ..+++++|+..|++++.++|....+...+.+
T Consensus 215 ~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 215 AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 999999999999999986553 444556554 5678999999999999998877655544443
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.1e-20 Score=167.24 Aligned_cols=225 Identities=9% Similarity=0.035 Sum_probs=190.8
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHh
Q 043837 72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLA-------AKDY-------ASAISETGYLLK-EDENNLEALLHRGRAYYY 136 (409)
Q Consensus 72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~ 136 (409)
++|+..|++ ++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++..
T Consensus 33 ~~a~~~~~~-al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQ-CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 678888988 889999999999999999874 5775 999999999999 799999999999999999
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHH
Q 043837 137 LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCK 216 (409)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~ 216 (409)
.|++++|+..|++++++.|.+... +|..++.++... |++++|+..|+++++..|. ...++...+.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~p~----~~~~~~~~a~ 176 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTL--VYIQYMKFARRA---------EGIKSGRMIFKKAREDART----RHHVYVTAAL 176 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHH--HHHHHHHHHHHH---------HCHHHHHHHHHHHHTSTTC----CTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccH--HHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCC----CHHHHHHHHH
Confidence 999999999999999999988642 688888888777 9999999999999999998 4556766665
Q ss_pred HHHH-cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh---CCC-cHHHHHHHHHHHHHHhh
Q 043837 217 VLVK-LGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ---SPQ-DMNIREALMRAEKALKM 291 (409)
Q Consensus 217 ~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~ 291 (409)
+... .|++++|+..|+++++.+|+++.+|..++.++..+|++++|+..|+++++. .|+ ...++..+.......+.
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5443 799999999999999999999999999999999999999999999999996 553 66777776666554433
Q ss_pred cchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC
Q 043837 292 SKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD 330 (409)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~ 330 (409)
.+++...+++ +...+|+....
T Consensus 257 -----------------~~~a~~~~~~-a~~~~p~~~~~ 277 (308)
T 2ond_A 257 -----------------LASILKVEKR-RFTAFREEYEG 277 (308)
T ss_dssp -----------------HHHHHHHHHH-HHHHTTTTTSS
T ss_pred -----------------HHHHHHHHHH-HHHHccccccc
Confidence 5666677766 45556665433
No 67
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=3.6e-20 Score=176.53 Aligned_cols=274 Identities=11% Similarity=0.029 Sum_probs=207.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH------------------------H
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA------------------------Q 56 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------------------------~ 56 (409)
.|++++|...|+++++.+|.+..+|..++..+...|++++|...+.+++...+.. .
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 3688999999999999999999999999999999999999988777765421111 1
Q ss_pred HHHHHHHH-----------------HH----------hCCCchHHHHHHHHHHHhhCCCcH--HHHHHHHH---------
Q 043837 57 STFDSALK-----------------LY----------DSGEYTKPLEYIDKVVLVFSPACS--KAKLLKVK--------- 98 (409)
Q Consensus 57 ~~~~~a~~-----------------~~----------~~~~~~~A~~~~~~~~~~~~p~~~--~~~~~~a~--------- 98 (409)
..|+.++. +. ..+++++|+.+|.+ ++. .|... ..|.....
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~-al~-~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR-GCV-NPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH-HTT-SCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH-HHh-chhhhHHHHHHHHHHHHHhhchhH
Confidence 12222221 11 14677788888877 555 35431 11111100
Q ss_pred ------------------------------------------------------HHHHc------cC----HHHHHHHHH
Q 043837 99 ------------------------------------------------------LLLAA------KD----YASAISETG 114 (409)
Q Consensus 99 ------------------------------------------------------~~~~~------~~----~~~A~~~~~ 114 (409)
+.+.. ++ ...++..|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 00000 11 136778899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHc-cCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 043837 115 YLLKEDENNLEALLHRGRAYYY-------LADHD-------VAQRHFQKGLR-LDPEHSELKKAYFALKNLLKKTKSAED 179 (409)
Q Consensus 115 ~al~~~p~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~l~~~~~~~~~~~~ 179 (409)
+++..+|.++.+|+.+|.++.. .|+++ +|+..|++++. +.|++.. +|..++.++...
T Consensus 263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~---l~~~~~~~~~~~----- 334 (530)
T 2ooe_A 263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---LYFAYADYEESR----- 334 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH---HHHHHHHHHHHT-----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHhc-----
Confidence 9999999999999999999886 78887 89999999997 7899888 888888888877
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHH-HHhccCH
Q 043837 180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEA-KLLTEDW 258 (409)
Q Consensus 180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~ 258 (409)
|++++|...|++++++.|.++ ..+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|++
T Consensus 335 ----g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 335 ----MKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp ----TCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred ----CCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence 999999999999999988731 35889999999999999999999999999888877777766665 3458999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 259 EGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 259 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
++|+..|+++++..|+++.++..+..+....+.
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999888877777655443
No 68
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=4.5e-19 Score=167.31 Aligned_cols=241 Identities=12% Similarity=0.031 Sum_probs=189.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQ----LCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYTK 73 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~ 73 (409)
+++++|+..|+++++. .++.+++.+|.+|.. .+++++|...+.++... ......+..+..+.. .+++++
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6889999999999886 678899999999999 99999999999888764 345667778888887 789999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 043837 74 PLEYIDKVVLVFSPACSKAKLLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQR 145 (409)
Q Consensus 74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~ 145 (409)
|+..|++ +.. +.++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.
T Consensus 134 A~~~~~~-a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 134 SVKWFRL-AAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHH-HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHH-HHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 9999988 444 3578889999999988 78999999999999876 578899999999988 889999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH-
Q 043837 146 HFQKGLRLDPEHSELKKAYFALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK- 220 (409)
Q Consensus 146 ~~~~al~~~p~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~- 220 (409)
+|+++++.. ++. ++..++.++.. . +++++|+.+|+++++.. ...+++++|.++..
T Consensus 209 ~~~~a~~~~--~~~---a~~~lg~~y~~g~g~~---------~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 209 WYRKSATSG--DEL---GQLHLADMYYFGIGVT---------QDYTQSRVLFSQSAEQG------NSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHHHHTT--CHH---HHHHHHHHHHHTSSSC---------CCHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHCC--CHH---HHHHHHHHHHcCCCCC---------CCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCC
Confidence 999988753 444 77778877765 4 67777777777777642 34466777777777
Q ss_pred ---cCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhhC
Q 043837 221 ---LGRGKDALSSCTEALNINEELIEALVQRGEAKLLT-----EDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 221 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~ 272 (409)
.+++++|+.+|+++++. .++.+++.+|.+|... +++++|+.+|+++++..
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 77777777777777654 4566777777777766 67777777777777654
No 69
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=7.4e-19 Score=165.80 Aligned_cols=223 Identities=11% Similarity=0.031 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHhhCCCcHH
Q 043837 20 TLSEAYFHRGSVLRQ----LCRVKARNSVAEKELSQLLQAQSTFDSALKLYD----SGEYTKPLEYIDKVVLVFSPACSK 91 (409)
Q Consensus 20 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~p~~~~ 91 (409)
.++.+++.+|.+|.. .+++++|+..+.++... ......+..+..+.. .+++++|+..|.+ +.. +.++.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~-a~~--~~~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK-AAL--KGLPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHH--TTCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHH--CCCHH
Confidence 344444455555444 44455554444444432 223344444444444 4445555555544 222 13444
Q ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCcHHHHHH
Q 043837 92 AKLLKVKLLLA----AKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQRHFQKGLRLDPEHSELKKA 163 (409)
Q Consensus 92 ~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (409)
+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+.. +
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~---a 185 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVW---S 185 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH---H
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH---H
Confidence 44445554444 44455555555544432 234444455554444 44455555555544443 2233 4
Q ss_pred HHHHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 043837 164 YFALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEAL 235 (409)
Q Consensus 164 ~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al 235 (409)
+..++.++.. . +++++|+.+|+++++.. ++.++..+|.+|.. .+++++|+.+|++++
T Consensus 186 ~~~Lg~~y~~g~g~~---------~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVE---------RNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHHHHHTSSSC---------CCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC---------cCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4444444443 3 44455555555444431 22344444444444 444555555555444
Q ss_pred hcChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHh
Q 043837 236 NINEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 236 ~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~ 270 (409)
+. .++.+++.+|.+|.. .+++++|+.+|+++.+
T Consensus 251 ~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 251 EQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp TT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 43 234444444444444 4445555555554443
No 70
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.88 E-value=8.2e-22 Score=192.67 Aligned_cols=185 Identities=17% Similarity=0.087 Sum_probs=173.3
Q ss_pred hhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837 84 VFSPACSKAKLLKVKLLLAAKDYASAISETGYLL--------KEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155 (409)
Q Consensus 84 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 155 (409)
..+|.++.+++..+ ...+++++|++.+++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888887777 78999999999999999 99999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
++.. ++..++.++... |++++|+..|+++++++|+ +..++.++|.++..+|++++ +..|++++
T Consensus 465 ~~~~---a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~P~----~~~~~~~lg~~~~~~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 465 WRWR---LVWYRAVAELLT---------GDYDSATKHFTEVLDTFPG----ELAPKLALAATAELAGNTDE-HKFYQTVW 527 (681)
T ss_dssp CCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred chHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 9998 999999999988 9999999999999999999 66799999999999999999 99999999
Q ss_pred hcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 043837 236 NINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKA 288 (409)
Q Consensus 236 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 288 (409)
+++|++..+++++|.++..+|++++|+..|+++++++|++..++..+..+...
T Consensus 528 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 528 STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998888777643
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.88 E-value=3.5e-21 Score=156.57 Aligned_cols=173 Identities=18% Similarity=0.110 Sum_probs=163.3
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK 168 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 168 (409)
...++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|++.. ++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a 83 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---VATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999988 888889
Q ss_pred HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHH
Q 043837 169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR 248 (409)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (409)
.++... +++++|+.++++++...|. ...++..+|.++...|++++|+..++++++..|.++.++..+
T Consensus 84 ~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 150 (186)
T 3as5_A 84 LTYVQV---------QKYDLAVPLLIKVAEANPI----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150 (186)
T ss_dssp HHHHHH---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHh---------cCHHHHHHHHHHHHhcCcH----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHH
Confidence 888888 9999999999999999998 677999999999999999999999999999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 249 GEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 249 a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
|.++...|++++|+.++++++++.|++..
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999999999887653
No 72
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.88 E-value=2.1e-21 Score=161.40 Aligned_cols=171 Identities=13% Similarity=0.074 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHh
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLL----------------KVKLLLAAKDYASAISETGYLLK 118 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~ 118 (409)
....+.+|..++..|++++|+..|.+ ++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQ-TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567788888888888889988888 88888988888888 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
++|+++.+++.+|.++...|++++|+.+|+++++++|++.. ++..++.++..... .....+...+.+++.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~~~-------~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA---ANIFLGNYYYLTAE-------QEKKKLETDYKKLSS 152 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHH-------HHHHHHHHHHC---C
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHhH-------HHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999 99999998865511 335567777877765
Q ss_pred cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
..| ...+++.+|.++...+++++|+.+|+++++++|+.
T Consensus 153 ~~~-----~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 153 PTK-----MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp CCH-----HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred CCc-----hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 443 24478889999999999999999999999999974
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=3.3e-20 Score=169.44 Aligned_cols=275 Identities=12% Similarity=0.032 Sum_probs=203.6
Q ss_pred CChHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHcCChHHHh-----------HHHHHHHHHHHH------HHH
Q 043837 2 KHYSEALDDLNTAIEADP---TLSEAY--FHR--GSVLRQLCRVKARN-----------SVAEKELSQLLQ------AQS 57 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~~l~~~~~------~~~ 57 (409)
+++++|...++++.+.-+ .+...+ +.+ .+.....+.+..+. ..+...-..... ...
T Consensus 26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~ 105 (383)
T 3ulq_A 26 FSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYF 105 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHH
Confidence 578899999988866422 344433 222 22333334444443 333332221122 223
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------H
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVF------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN-------L 124 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~ 124 (409)
++.+|..++..|++++|+.++.+ ++.. .+..+.++..+|.++...|++++|+.++++++++.+.. .
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKK-AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-HHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 44589999999999999999999 6665 22356899999999999999999999999999985433 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--
Q 043837 125 EALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-- 199 (409)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 199 (409)
.++..+|.+|..+|++++|+.++++++.+.+ +......++.++|.++... |++++|+.++++++++
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ---------SQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998754 3344445788888888877 9999999999999994
Q ss_pred ---C-CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----ChhcHHHHHHHHHHHHhccC---HHHHHHHHHH
Q 043837 200 ---D-PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-----NEELIEALVQRGEAKLLTED---WEGAVEDLKS 267 (409)
Q Consensus 200 ---~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~ 267 (409)
+ |. ...++.++|.++..+|++++|+.++++++++ +|.....+..++.++...++ +++|+..+++
T Consensus 256 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 256 ESNILPS----LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HTTCGGG----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred hhccchh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3 44 6889999999999999999999999999988 45455556789999999999 7888888876
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 268 AAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 268 al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
. ...|....+...++.+....+.
T Consensus 332 ~-~~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 332 K-MLYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred C-cCHHHHHHHHHHHHHHHHHCCC
Confidence 6 3333334455555555554443
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.87 E-value=2.6e-20 Score=156.88 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC---SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE---ALL 128 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 128 (409)
....+.+|..++..|+|++|+..|++ ++...|.+ ..+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEA-LDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34567788888888889999999988 77777765 478899999999999999999999999999998764 788
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHH
Q 043837 129 HRGRAYYY------------------LADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAV 190 (409)
Q Consensus 129 ~l~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 190 (409)
.+|.++.. .|++++|+..|+++++.+|++.....+...+..+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~----------------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR----------------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------
Confidence 88888876 4567777777777777777776533333333322211
Q ss_pred HHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH---HHHHHHHHHHHhccCHHHHHHHHHH
Q 043837 191 EDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI---EALVQRGEAKLLTEDWEGAVEDLKS 267 (409)
Q Consensus 191 ~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~ 267 (409)
.......+|.++...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..+++
T Consensus 146 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 146 ----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 122446789999999999999999999999988765 7899999999999999999999999
Q ss_pred HHhhCCCcH
Q 043837 268 AAQQSPQDM 276 (409)
Q Consensus 268 al~~~p~~~ 276 (409)
+....|++.
T Consensus 210 l~~~~~~~~ 218 (225)
T 2yhc_A 210 IAANSSNTL 218 (225)
T ss_dssp HHHCCSCCC
T ss_pred HHhhCCCch
Confidence 999888764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=2.7e-19 Score=162.69 Aligned_cols=265 Identities=14% Similarity=0.010 Sum_probs=211.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHhC
Q 043837 1 MKHYSEALDDLNTAIEADPTLS-----EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQ-------AQSTFDSALKLYDS 68 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~a~~~~~~ 68 (409)
.|++++|+..+++++...|... .++..+|.++...|++++|...+.+++..... .......+..+...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 4789999999999999887653 26788999999999999999999998874332 33456788899999
Q ss_pred CCchHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFS--------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-----NLEALLHRGRAYY 135 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~ 135 (409)
|++++|+.++.+ ++... |....++..+|.++...|++++|+..+++++.+.+. ...++..+|.++.
T Consensus 107 G~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 107 GFLQTAWETQEK-AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TCHHHHHHHHHH-HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 999999999998 55543 345677888999999999999999999999998775 2457889999999
Q ss_pred hcCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837 136 YLADHDVAQRHFQKGLRLDPE--HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 213 (409)
..|++++|+.++++++.+.+. ... .+... .....+..+...|++++|...+.+++...|..+......+..
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHS---DWISN----ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCH---HHHHH----HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcch---hHHHH----HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 999999999999999876332 211 11111 001112223345999999999999999877543323456789
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcChh------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 043837 214 LCKVLVKLGRGKDALSSCTEALNINEE------LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 214 la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 273 (409)
++.++...|++++|+..+++++...+. ...++..++.++...|++++|...+++++.+.+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887543 235888899999999999999999999998764
No 76
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=4e-22 Score=156.52 Aligned_cols=146 Identities=13% Similarity=0.072 Sum_probs=113.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH
Q 043837 96 KVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTK 175 (409)
Q Consensus 96 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~ 175 (409)
+|.++...|++++|+..+++++..+|+++.+++.+|.+|+..|++++|+.+|+++++++|++.. +|..++.++...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~- 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---AHRFLGLLYELE- 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT-
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc-
Confidence 5667777788888888888888888877778888888888888888888888888888888877 778888777777
Q ss_pred HHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHH-HHHHHhcChhcHHHHHHHHHHHHh
Q 043837 176 SAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSS-CTEALNINEELIEALVQRGEAKLL 254 (409)
Q Consensus 176 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~ 254 (409)
|++++|+..|+++++++|+ ++.++.++|.++...+++++|... ++++++++|+++.++..++.++..
T Consensus 79 --------~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 79 --------ENTDKAVECYRRSVELNPT----QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp --------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred --------CchHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 8888888888888888887 566888888888888887766654 478888888888888888877777
Q ss_pred ccC
Q 043837 255 TED 257 (409)
Q Consensus 255 ~~~ 257 (409)
.|+
T Consensus 147 ~G~ 149 (150)
T 4ga2_A 147 EGE 149 (150)
T ss_dssp CCC
T ss_pred hCc
Confidence 664
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=4.1e-20 Score=162.15 Aligned_cols=214 Identities=10% Similarity=0.046 Sum_probs=172.7
Q ss_pred HHHHHHcCChHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc------HHHHHH
Q 043837 29 GSVLRQLCRVKARNSVAEKELSQL-------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC------SKAKLL 95 (409)
Q Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~------~~~~~~ 95 (409)
|.+|..+|++++|+..+.+++... ..+..+...+..+...|++++|+.+|++ ++.+.|.. ..++..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~-Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN-AIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHH
Confidence 778999999999999999988753 2356778899999999999999999999 77766543 568999
Q ss_pred HHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH----HHHHH
Q 043837 96 KVKLLLAA-KDYASAISETGYLLKEDENN------LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE----LKKAY 164 (409)
Q Consensus 96 ~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~ 164 (409)
+|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.+|++++.+.|++.. ....+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999996 99999999999999998754 467899999999999999999999999999987653 22356
Q ss_pred HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc-hHHHHHHHHHHHH--HcCChhHHHHHHHHHHhcChhc
Q 043837 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH-NVHLYLGLCKVLV--KLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~ 241 (409)
..++.++... |++++|+.+|+++++++|+.... ....+..++.++. ..+++++|+..|++++.++|..
T Consensus 203 ~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 203 LKKGLCQLAA---------TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 7778887777 99999999999999999985431 1234555666664 4678999999999999999988
Q ss_pred HHHHHHHHHHH
Q 043837 242 IEALVQRGEAK 252 (409)
Q Consensus 242 ~~~~~~la~~~ 252 (409)
..++..+-...
T Consensus 274 ~~~~~~~k~~~ 284 (292)
T 1qqe_A 274 ITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77776665544
No 78
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=2e-19 Score=156.54 Aligned_cols=234 Identities=11% Similarity=0.004 Sum_probs=203.9
Q ss_pred HHHHHHHHhCCCc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-
Q 043837 59 FDSALKLYDSGEY-TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK--DYASAISETGYLLKEDENNLEALLHRGRAY- 134 (409)
Q Consensus 59 ~~~a~~~~~~~~~-~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~- 134 (409)
+.........+.+ ++|+.++++ ++.++|.+..+|+.++.++..++ ++++++..+..++..+|++..+|+.++.++
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~-~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITEL-GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHH-HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 3344445566666 589999998 99999999999999999999999 999999999999999999999999999999
Q ss_pred ---Hhc---CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH--HHHHHHHHHHccCCCCccc
Q 043837 135 ---YYL---ADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLR--VAVEDFKAALALDPNHTAH 206 (409)
Q Consensus 135 ---~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~ 206 (409)
... +++++++..+.+++..+|.+.. +|...+.++..+ +.++ +++++++++++.+|.
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~---aW~~R~~vl~~l---------~~~~~~~EL~~~~~~i~~d~~---- 178 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPKNHH---VWSYRKWLVDTF---------DLHNDAKELSFVDKVIDTDLK---- 178 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCTTCHHHHHHHHHHHHHCTT----
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh---------cccChHHHHHHHHHHHHhCCC----
Confidence 777 7899999999999999999999 899999998888 8888 999999999999999
Q ss_pred hHHHHHHHHHHHHHcCC------hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHH-HHHHHHHHHhhC---CCcH
Q 043837 207 NVHLYLGLCKVLVKLGR------GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEG-AVEDLKSAAQQS---PQDM 276 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---p~~~ 276 (409)
+..+|..++.++...+. ++++++++++++..+|++..+|..++.++...|+..+ ......+++++. |.++
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 78899999999999987 9999999999999999999999999999999998555 455777777776 7888
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCC
Q 043837 277 NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPD 326 (409)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d 326 (409)
.+...+..+.... .+.++..+.|..++.++.|.
T Consensus 259 ~al~~la~~~~~~-----------------~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 259 FALETLAKIYTQQ-----------------KKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHcc-----------------CCHHHHHHHHHHHHhccChH
Confidence 8888888876532 23567788888877666665
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=170.31 Aligned_cols=229 Identities=14% Similarity=0.083 Sum_probs=180.2
Q ss_pred CCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH---------HHHHHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEA--------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ---------LLQAQSTFDSAL 63 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~a~ 63 (409)
.|++++|+..|++++++ +|....++..+|.++...|++++|...+.+++.. .......+..+.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 48999999999999995 6777889999999999999999999999998875 445667788999
Q ss_pred HHHhCCCchHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHH
Q 043837 64 KLYDSGEYTKPLEYIDKVVLVF--------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--------DENNLEAL 127 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~ 127 (409)
.+...|++++|+.++.+ ++.. .|....++..+|.++...|++++|+.+++++++. .|....++
T Consensus 120 ~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKR-ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHTTTCHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999 6655 3667888999999999999999999999999998 66677789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC---------cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 128 LHRGRAYYYLADHDVAQRHFQKGLRLDPE---------HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 128 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
..+|.++...|++++|+.++++++...|. ... .+........ ........+.+.+|+..+.+++.
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP---IWMHAEEREE---CKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC---HHHHHHHHHH---C-------CCSCCCC--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH---HHHHHHHHHH---hcCchhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999975432 221 2222222221 12222333777788888888888
Q ss_pred cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
..|. ...++..+|.++...|++++|+.++++++++.|.
T Consensus 273 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 273 DSPT----VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 8887 7889999999999999999999999999998664
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.85 E-value=2.5e-20 Score=162.19 Aligned_cols=236 Identities=14% Similarity=0.056 Sum_probs=178.1
Q ss_pred CChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchH
Q 043837 2 KHYSEALDDLNTAIEA--------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTK 73 (409)
Q Consensus 2 g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 73 (409)
|++++|+..|++++++ +|..+.++..+|.++...|++++|+..+.+++....
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------- 74 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE-------------------- 74 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH--------------------
Confidence 6778888888888874 356677888888888888888877666555443211
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 043837 74 PLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--------DENNLEALLHRGRAYYYLADHDVAQR 145 (409)
Q Consensus 74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~ 145 (409)
+......|....++..+|.++...|++++|+..+++++.+ +|....++..+|.++...|++++|+.
T Consensus 75 ------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 75 ------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp ------HHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ------HHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1000224566788999999999999999999999999988 46667889999999999999999999
Q ss_pred HHHHHHcc-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC-----ccchHHHHHHHH
Q 043837 146 HFQKGLRL-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH-----TAHNVHLYLGLC 215 (409)
Q Consensus 146 ~~~~al~~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~la 215 (409)
++++++.+ .++++....++..++.++... |++++|+.++++++++.+.. ......++..++
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ---------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE 219 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 99999987 233444444889999999888 99999999999999863220 111445677777
Q ss_pred HHHHHcCChh------HHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 216 KVLVKLGRGK------DALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 216 ~~~~~~~~~~------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
..+...+... ++...+.......|....++..+|.++..+|++++|+.++++++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7776655543 33344444444568889999999999999999999999999999763
No 81
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.85 E-value=1.9e-19 Score=167.56 Aligned_cols=259 Identities=14% Similarity=0.064 Sum_probs=192.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ--LLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
++++|+..|+++++.+ ++.+++.+|.+|...+...++...+...... .......+..+..+...+.+++++.....
T Consensus 89 ~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 4456666666665533 2335566666666555544442222222111 11234566777777777777766666444
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHcc
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAK---DYASAISETGYLLKEDENNLEALLHRGRAYYYL----ADHDVAQRHFQKGLRL 153 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~ 153 (409)
........++.+++.+|.+|...| ++++|+..|+++++..|.....++.+|.+|... +++++|+.+|+++.
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence 333334455569999999999999 999999999999999999999999999999776 79999999999998
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC-----ChhHHH
Q 043837 154 DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG-----RGKDAL 228 (409)
Q Consensus 154 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~ 228 (409)
|.++. +++.++.++... ...+++++|+.+|+++.+.. ++.+++++|.+|. .| ++++|+
T Consensus 245 -~g~~~---a~~~Lg~~~~~~------~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 245 -PGYPA---SWVSLAQLLYDF------PELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp -GGSTH---HHHHHHHHHHHS------GGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred -CCCHH---HHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 78888 899999884311 12399999999999998653 4669999999998 55 999999
Q ss_pred HHHHHHHhcChhcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 229 SSCTEALNINEELIEALVQRGEAKLL----TEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
.+|+++. +.++.+++.+|.+|.. ..++++|+.+|+++.+. .++.+...|..++.
T Consensus 308 ~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 308 AHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFS 365 (452)
T ss_dssp HHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHH
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 9999998 8899999999999987 45999999999999885 44566666666654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.85 E-value=1.8e-19 Score=164.16 Aligned_cols=234 Identities=17% Similarity=0.108 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHcCChHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCC-------Cc
Q 043837 24 AYFHRGSVLRQLCRVKARNSVAEKELS-------QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSP-------AC 89 (409)
Q Consensus 24 ~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p-------~~ 89 (409)
.++.+|..+...|++++|+..+.+++. ....+...+..|..++..|++++|+.++.+ ++...+ ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ-ALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH-HHHHHHhCCCchhhH
Confidence 567889999999999999999999876 345677888999999999999999999998 665432 23
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCcH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN------NLEALLHRGRAYYYLADHDVAQRHFQKGLR-----LDPEHS 158 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~ 158 (409)
+.++..+|.++...|++++|+..+++++++.+. ...++.++|.+|..+|++++|+.++++++. .+|...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 568889999999999999999999999987431 245788999999999999999999999999 666654
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHHHHHHHHHHHHcCC---hhHHHHHHHH
Q 043837 159 ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHLYLGLCKVLVKLGR---GKDALSSCTE 233 (409)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~ 233 (409)
. ++..++.++... |++++|+.++++++++.+. ++. ....+..++.++...++ +.+|+..+++
T Consensus 262 ~---~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 262 K---VLFGLSWTLCKA---------GQTQKAFQFIEEGLDHITARSHKF-YKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp H---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCCTTCCSC-HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 4 888899888887 9999999999999998654 222 34456778888888888 8888888877
Q ss_pred HHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 043837 234 ALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 234 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 272 (409)
....|....++..+|.+|...|++++|+.+|++++++.
T Consensus 329 -~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 329 -KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34456677888999999999999999999999998764
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=1.2e-19 Score=147.40 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY 134 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 134 (409)
...++..+..+...|++++|+..+++ ++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQ-VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTT-TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34456677778888888899999988 88889999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837 135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 214 (409)
...|++++|+.++++++...|.+.. ++..++.++... |++++|+.+++++++..|. ...++..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~l 150 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFN---VRFRLGVALDNL---------GRFDEAIDSFKIALGLRPN----EGKVHRAI 150 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHH---HHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCcc----chHHHHHH
Confidence 9999999999999999999999988 888888888877 9999999999999999998 67799999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837 215 CKVLVKLGRGKDALSSCTEALNINEELI 242 (409)
Q Consensus 215 a~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (409)
|.++...|++++|+.+++++++.+|++.
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 9999999999999999999999988764
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=3.5e-21 Score=151.14 Aligned_cols=143 Identities=11% Similarity=0.019 Sum_probs=128.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV 208 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 208 (409)
.||.++...+++++|+..+++++..+|+++. .++.++.++... |++++|+.+|+++++++|+ ++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---~~~~la~~y~~~---------~~~~~A~~~~~~al~~~p~----~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI---KGFYFAKLYYEA---------KEYDLAKKYICTYINVQER----DP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT---THHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CH
Confidence 4788999999999999999999999998887 889999999888 9999999999999999999 78
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHH
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVED-LKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
.+|.++|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++.....+..
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999887765 59999999999998877666543
No 85
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.84 E-value=1.2e-17 Score=145.98 Aligned_cols=208 Identities=11% Similarity=0.020 Sum_probs=183.3
Q ss_pred HHHHHHHHhCCCch-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHH
Q 043837 59 FDSALKLYDSGEYT-KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD----------YASAISETGYLLKEDENNLEAL 127 (409)
Q Consensus 59 ~~~a~~~~~~~~~~-~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~ 127 (409)
..........++++ +|+.++++ ++..+|.+..+|+.++.++..++. +++++.++..++..+|.+..+|
T Consensus 33 ~~~~~~~~~~~e~s~eaL~~t~~-~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW 111 (331)
T 3dss_A 33 TQAVFQKRQAGELDESVLELTSQ-ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW 111 (331)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHH-HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHH-HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34444555678887 78999998 999999999999999999988876 7899999999999999999999
Q ss_pred HHHHHHHHhcCC--hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC-HHHHHHHHHHHHccCCCCc
Q 043837 128 LHRGRAYYYLAD--HDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK-LRVAVEDFKAALALDPNHT 204 (409)
Q Consensus 128 ~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~ 204 (409)
..++.++...++ +++++.++.+++..+|.+.. +|...+.+.... +. ++++++++.++++.+|.
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~---AW~~R~~vl~~l---------~~~~~eel~~~~~~I~~~p~-- 177 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQA---------AVAPAEELAFTDSLITRNFS-- 177 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHCSC--
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh---------CcCHHHHHHHHHHHHHHCCC--
Confidence 999999999994 89999999999999999999 899998888877 77 69999999999999999
Q ss_pred cchHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-----------cCHH
Q 043837 205 AHNVHLYLGLCKVLVKL--------------GRGKDALSSCTEALNINEELIEALVQRGEAKLLT-----------EDWE 259 (409)
Q Consensus 205 ~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~ 259 (409)
+..+|.+++.++... +.++++++++.+++..+|++..+|+.+..++... +.++
T Consensus 178 --N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 178 --NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp --CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 788999999999887 4588999999999999999999998666555555 5689
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHH
Q 043837 260 GAVEDLKSAAQQSPQDMNIREALM 283 (409)
Q Consensus 260 ~A~~~~~~al~~~p~~~~~~~~l~ 283 (409)
++++.+++++++.|++.-+...+.
T Consensus 256 ~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 256 SELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccchHHHHHH
Confidence 999999999999999865544443
No 86
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=8.6e-19 Score=167.02 Aligned_cols=229 Identities=9% Similarity=-0.008 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Q 043837 5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQ-------LCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEY 77 (409)
Q Consensus 5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 77 (409)
..|+..|++++..+|.++.+|+.+|.++.. .|+++.|.. + .++|+..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~---------------------~-----~~~A~~~ 308 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL---------------------F-----SDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH---------------------H-----HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh---------------------h-----hHHHHHH
Confidence 478889999999999999999999998875 566542210 0 3478888
Q ss_pred HHHHHHh-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 043837 78 IDKVVLV-FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL-EALLHRGRAYYYLADHDVAQRHFQKGLRLDP 155 (409)
Q Consensus 78 ~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 155 (409)
|++ ++. ..|.+..+|..++.++...|++++|...|++++++.|.++ .+|..++.++...|++++|+..|++++...|
T Consensus 309 ~~~-Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 309 YER-AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHH-HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHH-HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 888 675 7999999999999999999999999999999999999986 6899999999999999999999999999988
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 156 EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
.... .+...+.+.. ...|++++|+.+|+++++..|+ ++.+|..++.++...|+.++|...|++++
T Consensus 388 ~~~~---~~~~~a~~~~--------~~~~~~~~A~~~~e~al~~~p~----~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 388 TRHH---VYVTAALMEY--------YCSKDKSVAFKIFELGLKKYGD----IPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp CCTH---HHHHHHHHHH--------HHTCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred CchH---HHHHHHHHHH--------HHcCChhHHHHHHHHHHHHCCC----CHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 7665 4443333311 1239999999999999999998 67799999999999999999999999999
Q ss_pred hcChhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 236 NINEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 236 ~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
...|.+ ..+|..........|+.+.+...++++++..|++
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 986544 4488888888888999999999999999999954
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=2.2e-18 Score=157.03 Aligned_cols=220 Identities=15% Similarity=0.121 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFS------PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN------- 122 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------- 122 (409)
..++.+|..++..|++++|+.+|.+ ++... +..+.++..+|.++...|++++|+..+++++++.+.
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYRE-AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 3456789999999999999999998 66542 235678999999999999999999999999987543
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc-
Q 043837 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA- 198 (409)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~- 198 (409)
...++..+|.+|..+|++++|+.++++++.+.+ +......++.++|.++... |++++|+.++++++.
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---------~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS---------GDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHH
Confidence 244788999999999999999999999998643 3334555888899988888 999999999999999
Q ss_pred ----cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----ChhcHHHHHHHHHHHHhccC---HHHHHHHHH
Q 043837 199 ----LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-----NEELIEALVQRGEAKLLTED---WEGAVEDLK 266 (409)
Q Consensus 199 ----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~---~~~A~~~~~ 266 (409)
.+|. ...++.++|.++..+|++++|+.++++++++ +|.....+..++.++...++ +.+|+..++
T Consensus 252 ~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 252 SREKVPDL----LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHCGGG----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHhhCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5555 6889999999999999999999999999987 34445667778888888888 888888877
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 267 SAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 267 ~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
+. ...|....+...++.+....+
T Consensus 328 ~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 328 KK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred hC-CChhHHHHHHHHHHHHHHHCC
Confidence 62 222333334444555544443
No 88
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.83 E-value=1.2e-17 Score=146.00 Aligned_cols=249 Identities=15% Similarity=0.098 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 043837 5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLV 84 (409)
Q Consensus 5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 84 (409)
++|+..++++|.++|++..+|..++.++..++.... .... ...+++++.+++. ++.
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~-----------~~~~------------~~~l~~EL~~~~~-~L~ 102 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKS-----------PEES------------AALVKAELGFLES-CLR 102 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSC-----------HHHH------------HHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccccc-----------chhh------------hHHHHHHHHHHHH-HHH
Confidence 479999999999999999999999999876643100 0000 1124567777777 899
Q ss_pred hCCCcHHHHHHHHHHHHHccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHccCCCcHHHH
Q 043837 85 FSPACSKAKLLKVKLLLAAKD--YASAISETGYLLKEDENNLEALLHRGRAYYYLAD-HDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 85 ~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~ 161 (409)
.+|.+..+|..++.++...++ +++++.++.++++.+|.+..+|..++.+....+. ++++++++.+++..+|.+..
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S-- 180 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS-- 180 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH--
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH--
Confidence 999999999999999999994 9999999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-----hhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-----------CChh
Q 043837 162 KAYFALKNLLKKTKSA-----EDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-----------GRGK 225 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~ 225 (409)
+|...+.++..+... ..-...+.++++++++.+++.++|+ +..+|+.+..++... +.++
T Consensus 181 -AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~----d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 181 -SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp -HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 899888887765100 0001114589999999999999999 666887665555554 4578
Q ss_pred HHHHHHHHHHhcChhcHHHHHHHHHHHH---hccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 226 DALSSCTEALNINEELIEALVQRGEAKL---LTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
++++.+++++++.|++...+..++.+.. ..+..++...++.+.++++|.....+..+..
T Consensus 256 ~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 256 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 9999999999999999665555544332 3578889999999999999998776655443
No 89
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.83 E-value=4.9e-20 Score=148.91 Aligned_cols=169 Identities=15% Similarity=0.075 Sum_probs=142.1
Q ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837 86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165 (409)
Q Consensus 86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 165 (409)
+|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++. .+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~---~~~ 77 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS---YKS 77 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---HHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---HHH
Confidence 3445567889999999999999999999999999999999999999999999999999999999999999 665 333
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc--HH
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL--IE 243 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~ 243 (409)
.++.+.... .....+|+..++++++++|+ +..+++++|.++...|++++|+..|+++++.+|+. +.
T Consensus 78 ~~~~~~~~~--------~~~~~~a~~~~~~al~~~P~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 78 LIAKLELHQ--------QAAESPELKRLEQELAANPD----NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp HHHHHHHHH--------HHTSCHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred HHHHHHHHh--------hcccchHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence 333222111 02334579999999999999 67899999999999999999999999999999875 66
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 244 ~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
++..++.++..+|+.++|+..|++++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999998875
No 90
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.83 E-value=1.2e-18 Score=162.13 Aligned_cols=255 Identities=10% Similarity=0.052 Sum_probs=169.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---HHHhHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CchH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRV---KARNSVAEKELSQLLQAQSTFDSALKLYDSG-----EYTK 73 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~ 73 (409)
|++++|+..|+++.+. +++.+++.+|.+|...|++ ++|+..+.+++.. .....+..+..++..+ ++++
T Consensus 17 g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 5788999999998776 4677888899999888888 8888888888866 6666777887666665 7788
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC---------------------------------------HHHHHHHHH
Q 043837 74 PLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD---------------------------------------YASAISETG 114 (409)
Q Consensus 74 A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~---------------------------------------~~~A~~~~~ 114 (409)
|+..|.+ ++.. .++.+++.+|.+|...+. .+.+..+++
T Consensus 93 A~~~~~~-Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~ 169 (452)
T 3e4b_A 93 AESLLKK-AFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICK 169 (452)
T ss_dssp HHHHHHH-HHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHH-HHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 8888888 4432 233355555555554443 222333344
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH
Q 043837 115 YLLKEDENNLEALLHRGRAYYYLA---DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE 191 (409)
Q Consensus 115 ~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 191 (409)
.+...+| .+++.+|.+|...| ++++|+.+|+++....|.... .++.++.++.... ...+++++|+.
T Consensus 170 ~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~---~~~~Lg~~y~~g~-----~~~~d~~~A~~ 238 (452)
T 3e4b_A 170 AALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ---RVDSVARVLGDAT-----LGTPDEKTAQA 238 (452)
T ss_dssp HHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHHHTCGG-----GSSCCHHHHHH
T ss_pred HHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHhCCC-----CCCCCHHHHHH
Confidence 4444444 38888999998888 889999999999998888877 6778887773311 12268899999
Q ss_pred HHHHHHccCCCCccchHHHHHHHHHH-H--HHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc-----CHHHHHH
Q 043837 192 DFKAALALDPNHTAHNVHLYLGLCKV-L--VKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE-----DWEGAVE 263 (409)
Q Consensus 192 ~~~~al~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----~~~~A~~ 263 (409)
+|+++. |. ++.+++++|.+ + ...+++++|+.+|+++++. .++.+++.+|.+|. .| ++++|+.
T Consensus 239 ~~~~aa---~g----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 239 LLEKIA---PG----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHG---GG----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHc---CC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 999988 66 56688999988 4 4688999999999998865 47889999999988 55 8999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 264 DLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 264 ~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
+|+++. +.++.+...+..++.
T Consensus 309 ~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 309 HFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHTTT---TTCHHHHHHHHHHHH
T ss_pred HHHHHh---CCCHHHHHHHHHHHH
Confidence 999988 778888777776654
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.83 E-value=3.7e-19 Score=155.53 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=158.7
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
+...-|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+...
T Consensus 109 l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~-- 186 (287)
T 3qou_A 109 LDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY-- 186 (287)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH--
T ss_pred HHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH--
Confidence 445569999999999999999999999999999999999999999999999999999999999999999999996554
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL 241 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (409)
.+...+..+... ++.++|+..+++++..+|+ +..+++++|.++...|++++|+..|.++++.+|++
T Consensus 187 -~~~~~~~~l~~~---------~~~~~a~~~l~~al~~~P~----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 187 -QGLVAQIELLXQ---------AADTPEIQQLQQQVAENPE----DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp -HHHHHHHHHHHH---------HTSCHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred -HHHHHHHHHHhh---------cccCccHHHHHHHHhcCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 455555555555 8888999999999999999 78899999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 242 --IEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 242 --~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
..++..++.++..+|+.++|+..|++++.
T Consensus 253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 89999999999999999999999999875
No 92
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.82 E-value=3e-19 Score=135.40 Aligned_cols=121 Identities=21% Similarity=0.365 Sum_probs=110.1
Q ss_pred HHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHH
Q 043837 149 KGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDAL 228 (409)
Q Consensus 149 ~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 228 (409)
++..++|+... .+..+|..+... |+|++|+..|+++++++|+ ++.++.++|.++..+|++++|+
T Consensus 4 r~a~inP~~a~---~~~~~G~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~ 67 (126)
T 4gco_A 4 RLAYINPELAQ---EEKNKGNEYFKK---------GDYPTAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRAL 67 (126)
T ss_dssp ---CCCHHHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCHHHHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHH
Confidence 34457777666 788888777766 9999999999999999999 7889999999999999999999
Q ss_pred HHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837 229 SSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285 (409)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 285 (409)
..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++.+++..+..+
T Consensus 68 ~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888765
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=2.5e-19 Score=135.91 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=65.3
Q ss_pred HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHH
Q 043837 83 LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKK 162 (409)
Q Consensus 83 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (409)
..++|..+..+..+|.+++..|+|++|+..|+++++++|.++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 82 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK--- 82 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH---
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
+|..+|.++..+ |++++|+..|+++++++|+
T Consensus 83 a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 83 GYIRKAACLVAM---------REWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHCcC
Confidence 555555555444 5555555555555555555
No 94
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.80 E-value=1.3e-17 Score=146.23 Aligned_cols=233 Identities=15% Similarity=0.042 Sum_probs=195.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043837 3 HYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVV 82 (409)
Q Consensus 3 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 82 (409)
..++|+..++++|.++|++..+|..++.++..++. .+++++.+++. +
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~--------------------------------~l~eEL~~~~~-~ 115 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK--------------------------------SLEDELRLMNE-F 115 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------------------------CHHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh--------------------------------hHHHHHHHHHH-H
Confidence 45789999999999999999999999998876652 35667777777 8
Q ss_pred HhhCCCcHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHc
Q 043837 83 LVFSPACSKAKLLKVKLLLAA-K-DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHD--------VAQRHFQKGLR 152 (409)
Q Consensus 83 ~~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~al~ 152 (409)
+..+|.+..+|..++.++... + ++++++..+.++++.+|.+..+|..++.+....+.++ ++++++.+++.
T Consensus 116 L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 116 AVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 899999999999999999998 7 8999999999999999999999999999999999888 99999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC-------HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh-
Q 043837 153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK-------LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG- 224 (409)
Q Consensus 153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~- 224 (409)
.+|.+.. +|...+.++..+ +. ++++++++++++.++|+ +..+|..+..++...++.
T Consensus 196 ~dp~N~S---AW~~R~~lL~~l---------~~~~~~~~~~~eELe~~~~aI~~~P~----n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 196 VDGRNNS---AWGWRWYLRVSR---------PGAETSSRSLQDELIYILKSIHLIPH----NVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HCTTCHH---HHHHHHHHHTTS---------TTCCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCS
T ss_pred hCCCCHH---HHHHHHHHHHhc---------cccccchHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCCc
Confidence 9999999 999999888766 54 79999999999999999 677999988888887764
Q ss_pred -------------------hHHHHHHHHHHhcC------hhcHHHHHHHHHHHHhccCHHHHHHHHHHHH-hhCCCcHHH
Q 043837 225 -------------------KDALSSCTEALNIN------EELIEALVQRGEAKLLTEDWEGAVEDLKSAA-QQSPQDMNI 278 (409)
Q Consensus 225 -------------------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~ 278 (409)
..-...+...+... +.++.++..++.+|...++.++|++.++... +.+|-....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~y 339 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGY 339 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHH
Confidence 23333333333322 4678899999999999999999999999987 678887776
Q ss_pred HHHHHH
Q 043837 279 REALMR 284 (409)
Q Consensus 279 ~~~l~~ 284 (409)
+.....
T Consensus 340 w~~~~~ 345 (349)
T 3q7a_A 340 WEFRRR 345 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=2e-18 Score=165.94 Aligned_cols=164 Identities=17% Similarity=0.113 Sum_probs=101.8
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ 148 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 148 (409)
|++++|+..|++ +++.+|.+..++..+|.++...|++++|+..|+++++++|++..++..+|.++..+|++++|+.+|+
T Consensus 3 g~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRA-AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566777777766 6666777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc---CChh
Q 043837 149 KGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL---GRGK 225 (409)
Q Consensus 149 ~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~---~~~~ 225 (409)
++++++|++.. ++..++.++... |++++|+..|+++++++|+ +..++.+++.++..+ |+++
T Consensus 82 ~al~~~p~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 82 QASDAAPEHPG---IALWLGHALEDA---------GQAEAAAAAYTRAHQLLPE----EPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhcCCCCHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhccccHH
Confidence 77777777666 666666666665 7777777777777777766 455666777777777 6777
Q ss_pred HHHHHHHHHHhcChhcHHHHHHHH
Q 043837 226 DALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~la 249 (409)
+|+..++++++.+|.+...+..++
T Consensus 146 ~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 146 VLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHhcCCcccChHHHhC
Confidence 777777777777666665555544
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.3e-18 Score=140.61 Aligned_cols=165 Identities=17% Similarity=0.161 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY 135 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 135 (409)
...+..|..++..|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQT-LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 3456778888888999999999988 8899999999999999999999999999999999999999 8877766665533
Q ss_pred -hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837 136 -YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214 (409)
Q Consensus 136 -~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 214 (409)
..++...|+..+++++..+|++.. ++..++.++... |++++|+..|+++++.+|+.. ...++.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l 150 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFE---LACELAVQYNQV---------GRDEEALELLWNILKVNLGAQ--DGEVKKTF 150 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHTTCTTTT--TTHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCcccC--hHHHHHHH
Confidence 334455689999999999999998 999999999888 999999999999999999732 35589999
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 043837 215 CKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 215 a~~~~~~~~~~~A~~~~~~al~ 236 (409)
+.++..+|+.++|+..|++++.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999875
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=3.7e-19 Score=138.84 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=90.9
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
..+++++.++|++.. +++.++.++... |++++|+..|++++.++|+ ++.+|.++|.++..+|++
T Consensus 23 ~~l~~al~l~p~~~~---~~~~lg~~~~~~---------g~~~eA~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 23 ATLKDINAIPDDMMD---DIYSYAYDFYNK---------GRIEEAEVFFRFLCIYDFY----NVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp CCTGGGCCSCHHHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHhCCCHHHHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHccH
Confidence 445566667777766 677777776666 7777777777777777777 566888888888888888
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 276 (409)
++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++++.|+.+
T Consensus 87 ~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888888888888888888888888888888888754
No 98
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.79 E-value=1.5e-16 Score=144.47 Aligned_cols=243 Identities=14% Similarity=0.017 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHcCChHHHhHHHHHHHHHH------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCc------
Q 043837 22 SEAYFHRGSVLRQLCRVKARNSVAEKELSQL------LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPAC------ 89 (409)
Q Consensus 22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~------ 89 (409)
..++..+|.++...|++++|...+.+.+... .........+..+...|++++|+..+.+ ++...|..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ-TEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHhcCcHHHH
Confidence 3567888999999999999999999888732 1234556778889999999999999998 66554332
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH--H
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKED--------ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS--E 159 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~ 159 (409)
..++..+|.++...|++++|+..+++++.+. |....++..+|.++...|++++|+.++++++.+.+... .
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 3457889999999999999999999999875 33455778899999999999999999999999877532 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc-hHHH--HHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH-NVHL--YLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~--~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
....+..++.++... |++++|+.++++++.+.+..... .... ...++.++...|++++|...+++++.
T Consensus 173 ~~~~~~~la~~~~~~---------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 173 QLQCLAMLIQCSLAR---------GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp GHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 223677777777777 99999999999999874432110 1111 12455668899999999999999998
Q ss_pred cChhc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 237 INEEL----IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 237 ~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
..|.. ...+..++.++...|++++|+..+++++...+.
T Consensus 244 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 76542 346788999999999999999999999887543
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.78 E-value=2.6e-18 Score=165.14 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=134.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 043837 103 AKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVS 182 (409)
Q Consensus 103 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 182 (409)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++.. ++..++.++...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~-------- 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---AVARLGRVRWTQ-------- 70 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---HHHHHHHHHHHT--------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHC--------
Confidence 478999999999999999999999999999999999999999999999999999988 999999999888
Q ss_pred cCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc---cCHH
Q 043837 183 KGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT---EDWE 259 (409)
Q Consensus 183 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~ 259 (409)
|++++|+.+|+++++++|+ +..++.++|.++...|++++|+..++++++++|++..++..++.++..+ |+++
T Consensus 71 -g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 71 -QRHAEAAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp -TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred -CCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHH
Confidence 9999999999999999999 6789999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhCCCcH
Q 043837 260 GAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 260 ~A~~~~~~al~~~p~~~ 276 (409)
+|+..++++++.+|++.
T Consensus 146 ~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 146 VLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHhcCCccc
Confidence 99999999999998863
No 100
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.78 E-value=2.5e-18 Score=146.07 Aligned_cols=212 Identities=13% Similarity=0.019 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHH-------HHHHHHccCHHHHHHHHHHHHhhCCCCH--
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLK-------VKLLLAAKDYASAISETGYLLKEDENNL-- 124 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~p~~~-- 124 (409)
.....+..|..+ ..+++..|+..|.+ ++..+|..+++|..+ +.++...++..+++..+.+.+.+.|...
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~-a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTE-ITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHH-HHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 455667777776 68999999999999 999999999999999 8999999999999999999999877543
Q ss_pred -------------------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837 125 -------------------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK 185 (409)
Q Consensus 125 -------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (409)
++...++.++...|++++|.+.|..++...|++. ..+.++.++... ++
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~----~~~~~a~l~~~~---------~r 150 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL----VAWMKAVVYGAA---------ER 150 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH----HHHHHHHHHHHT---------TC
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHc---------CC
Confidence 3455688999999999999999999988887554 566677666666 99
Q ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--hh-cHHHHHHHHHHHHhccCHHHHH
Q 043837 186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--EE-LIEALVQRGEAKLLTEDWEGAV 262 (409)
Q Consensus 186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~A~ 262 (409)
|++|+..|+.++...+. .....+++++|.++..+|++++|+.+|++++... |. .+++++.+|.++..+|+.++|.
T Consensus 151 ~~dA~~~l~~a~~~~d~--~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 151 WTDVIDQVKSAGKWPDK--FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp HHHHHHHHTTGGGCSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhhccCCc--ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999988775422 1124589999999999999999999999998654 65 7789999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHH
Q 043837 263 EDLKSAAQQSPQDMNIREALM 283 (409)
Q Consensus 263 ~~~~~al~~~p~~~~~~~~l~ 283 (409)
..|++++..+|+ ..+...|.
T Consensus 229 ~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 229 ALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999 77766653
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.78 E-value=1.7e-17 Score=139.53 Aligned_cols=174 Identities=13% Similarity=0.069 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH---HH
Q 043837 21 LSEAYFHRGSVLRQLCRVKARNSVAEKELSQLL----QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK---AK 93 (409)
Q Consensus 21 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~---~~ 93 (409)
.+.+++.+|..+...|++++|+..+.+.+...+ .....+..|..++..|++++|+..|++ ++...|+++. ++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~-~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDR-FIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCcCCCcHHHHH
Confidence 467788999999999999999999999887533 246788899999999999999999999 8888888764 78
Q ss_pred HHHHHHHHH------------------ccCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHhcC
Q 043837 94 LLKVKLLLA------------------AKDYASAISETGYLLKEDENNLEAL-----------------LHRGRAYYYLA 138 (409)
Q Consensus 94 ~~~a~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~ 138 (409)
+.+|.++.. .|++++|+..|+++++.+|+++.++ +.+|.+|...|
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 889998876 5799999999999999999987544 57899999999
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837 139 DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT 204 (409)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 204 (409)
++++|+..|+++++..|+++....++..++.++..+ |++++|+..++.+....|++.
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~---------g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM---------QMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHCCSCCC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhhCCCch
Confidence 999999999999999999987667899999999888 999999999999999988754
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.78 E-value=3.6e-18 Score=150.89 Aligned_cols=206 Identities=12% Similarity=0.000 Sum_probs=133.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
|++++|..+++++.+..+.. .+...+++++|...+.++ +..+...+++++|+..|.+
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~- 61 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQ- 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHH-
Confidence 46788888888888776642 011146666665555433 3445566777777777777
Q ss_pred HHhhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 043837 82 VLVFSPA------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--N----LEALLHRGRAYYYLADHDVAQRHFQK 149 (409)
Q Consensus 82 ~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 149 (409)
++...+. ...++..+|.+|..+|++++|+.+|++++++.+. + ..++..+|.+|.. |++++|+.+|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 5544332 2457777888888888888888888888877432 1 3467778888877 888888888888
Q ss_pred HHccCCCc---HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--chHHHHHHHHHHHHHcCCh
Q 043837 150 GLRLDPEH---SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--HNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 150 al~~~p~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~la~~~~~~~~~ 224 (409)
++.+.|.. .....++.+++.++..+ |++++|+.+|++++.+.|.+.. ....++..++.++..+|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQ---------QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 88765532 12233556666666555 7777777777777776554221 1234566667777777777
Q ss_pred hHHHHHHHHHHhcChhc
Q 043837 225 KDALSSCTEALNINEEL 241 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~ 241 (409)
++|+.+|++++ ++|..
T Consensus 212 ~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 212 VAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHh-CCCCC
Confidence 77777777777 66643
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=7.4e-19 Score=137.16 Aligned_cols=121 Identities=10% Similarity=0.072 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Q 043837 106 YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGK 185 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (409)
+-.+-..+++++.++|+++.+++.+|.+++..|++++|+..|++++.++|+++. +|..++.++... |+
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---~~~~lg~~~~~~---------g~ 85 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---YIMGLAAIYQIK---------EQ 85 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TC
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH---------cc
Confidence 333445566777777777777777777777777787888888777777777777 777777777777 77
Q ss_pred HHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837 186 LRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242 (409)
Q Consensus 186 ~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (409)
+++|+..|+++++++|+ ++.+++++|.++..+|++++|+..|++++++.|+.+
T Consensus 86 ~~~Ai~~~~~al~l~P~----~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKN----DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHHSSS----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 78888888888877777 455777888888888888888888888888777654
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.77 E-value=2.3e-16 Score=138.46 Aligned_cols=177 Identities=13% Similarity=0.046 Sum_probs=160.5
Q ss_pred HHhCCC-chHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-C-Ch
Q 043837 65 LYDSGE-YTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK-DYASAISETGYLLKEDENNLEALLHRGRAYYYL-A-DH 140 (409)
Q Consensus 65 ~~~~~~-~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~-~~ 140 (409)
.+..+. .++|+.++++ ++..+|.+..+|+.++.++..++ .+++++..+.+++..+|++..+|..++.++..+ + ++
T Consensus 63 ~~~~~e~se~AL~lt~~-~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEI-IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHH-HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 334444 4689999998 99999999999999999999999 599999999999999999999999999999998 8 89
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH--------HHHHHHHHHHccCCCCccchHHHHH
Q 043837 141 DVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLR--------VAVEDFKAALALDPNHTAHNVHLYL 212 (409)
Q Consensus 141 ~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~ 212 (409)
++++..+.+++..+|.+.. +|...+.+...+ +.++ +++++++++++.+|. +..+|.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~---AW~~R~wvl~~l---------~~~~~~~~~~~~eELe~~~k~I~~dp~----N~SAW~ 205 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYH---TWAYLHWLYSHF---------STLGRISEAQWGSELDWCNEMLRVDGR----NNSAWG 205 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHH---HHHHHHHHHHHH---------HHTTCCCHHHHHHHHHHHHHHHHHCTT----CHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh---------ccccccchhhHHHHHHHHHHHHHhCCC----CHHHHH
Confidence 9999999999999999999 888888888877 5555 999999999999999 788999
Q ss_pred HHHHHHHHcCC-------hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837 213 GLCKVLVKLGR-------GKDALSSCTEALNINEELIEALVQRGEAKLLTEDW 258 (409)
Q Consensus 213 ~la~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 258 (409)
.++.++..++. ++++++++++++..+|++..+|..+..++...++.
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999987 68999999999999999999999988888877654
No 105
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=2.9e-16 Score=156.62 Aligned_cols=229 Identities=15% Similarity=0.070 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837 20 TLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKL 99 (409)
Q Consensus 20 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~ 99 (409)
+.+.+|+.+|.++...|++++|+..|.++ .....+++.+..+.+.|+|++|+++|.. +.+..+. +.+...+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~m-Ark~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQM-ARKKARE-SYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhccc-ccccHHHHHH
Confidence 33444555555555555555554444332 2233334444444445555555555544 3333311 1122234444
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 043837 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAED 179 (409)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 179 (409)
|.+++++++ ++.|. ...+...+..+|..+...|+|++|+.+|.++ . .|..++.++..+
T Consensus 1177 YAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~---ny~rLA~tLvkL----- 1234 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S---NFGRLASTLVHL----- 1234 (1630)
T ss_pred HHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------h---HHHHHHHHHHHh-----
Confidence 444444442 22221 1122334455666666666666666666664 1 455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHH
Q 043837 180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWE 259 (409)
Q Consensus 180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 259 (409)
|++++|++.++++. +..+|...+.++...+++..|..+... +..+ ++.+..++..|...|.++
T Consensus 1235 ----ge~q~AIEaarKA~---------n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1235 ----GEYQAAVDGARKAN---------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFE 1297 (1630)
T ss_pred ----CCHHHHHHHHHHhC---------CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHH
Confidence 66666666666661 234666666666666666666665553 3333 445558888999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Q 043837 260 GAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK 293 (409)
Q Consensus 260 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 293 (409)
+|+..++.++.++|.+..+...+..+....+..+
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999988888776655443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=2.1e-17 Score=144.33 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA 133 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 133 (409)
.....+..|..+...|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXD-AWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHH-HHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 345667888888889999999999998 8999999999999999999999999999999999999999877777788888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 213 (409)
+...++.++|+..+++++..+|++.. ++..++.++... |++++|+..|.++++.+|++. ...++.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~---~~~~la~~l~~~---------g~~~~A~~~l~~~l~~~p~~~--~~~a~~~ 260 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAA---LATQLALQLHQV---------GRNEEALELLFGHLRXDLTAA--DGQTRXT 260 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTTGG--GGHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHH---HHHHHHHHHHHc---------ccHHHHHHHHHHHHhcccccc--cchHHHH
Confidence 99999999999999999999999999 999999999888 999999999999999999842 2779999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 043837 214 LCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 214 la~~~~~~~~~~~A~~~~~~al~ 236 (409)
++.++..+|+.++|+..|++++.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999875
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.77 E-value=7.3e-17 Score=134.28 Aligned_cols=192 Identities=13% Similarity=0.014 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 043837 72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLA----DHDVAQRHF 147 (409)
Q Consensus 72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~ 147 (409)
.+|+..|.+ +.+ ..++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|
T Consensus 3 ~eA~~~~~~-aa~--~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQ-QAE--AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHH-HHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHH-HHH--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 356777777 443 378999999999999999999999999999875 679999999999998 7 899999999
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCC
Q 043837 148 QKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGR 223 (409)
Q Consensus 148 ~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~ 223 (409)
++++. +.++. ++..++.++..-. -..+++++|+.+|+++++..|.+. .+.+++++|.+|.. .++
T Consensus 77 ~~A~~--~g~~~---a~~~Lg~~y~~g~-----g~~~d~~~A~~~~~~A~~~~~~~~--~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 77 EKAVE--AGSKS---GEIVLARVLVNRQ-----AGATDVAHAITLLQDAARDSESDA--AVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp HHHHH--TTCHH---HHHHHHHHHTCGG-----GSSCCHHHHHHHHHHHTSSTTSHH--HHHHHHHHHHHHHHTSSSSCC
T ss_pred HHHHH--CCCHH---HHHHHHHHHHcCC-----CCccCHHHHHHHHHHHHHcCCCcc--hHHHHHHHHHHHHcCCCCCCC
Confidence 99965 46666 8889998876400 002899999999999999988310 47799999999999 899
Q ss_pred hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-c-----CHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 224 GKDALSSCTEALNINEELIEALVQRGEAKLLT-E-----DWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
+++|+.+|+++++. |.++.+++.+|.+|... + ++++|+.+|+++.+... ..+...+..
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999998 66778999999999864 3 89999999999999853 444444433
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.76 E-value=3e-18 Score=133.90 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=110.3
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
..|++++.++|++.. .++.++.++... |++++|+..|++++.++|+ +..+|.++|.++...|++
T Consensus 8 ~~~~~al~~~p~~~~---~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~ 71 (148)
T 2vgx_A 8 GTIAMLNEISSDTLE---QLYSLAFNQYQS---------GXYEDAHXVFQALCVLDHY----DSRFFLGLGACRQAMGQY 71 (148)
T ss_dssp CSHHHHTTCCHHHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHcCCHhhHH---HHHHHHHHHHHc---------CChHHHHHHHHHHHHcCcc----cHHHHHHHHHHHHHHhhH
Confidence 457778888887777 777777777666 8888888888888888888 677899999999999999
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...++.
T Consensus 72 ~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 72 DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887766666666555543
No 109
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=1.3e-17 Score=144.94 Aligned_cols=211 Identities=15% Similarity=0.080 Sum_probs=159.0
Q ss_pred hCCCchHHHHHHHHHHHh--------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHH
Q 043837 67 DSGEYTKPLEYIDKVVLV--------FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--------DENNLEALLHR 130 (409)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~--------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 130 (409)
..+++++|+.+|++ ++. ..|..+.++..+|.++...|++++|+..+++++++ +|....++..+
T Consensus 13 ~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQ-ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHH-HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34666666666666 333 23667889999999999999999999999999987 35567789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccC-----CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc------
Q 043837 131 GRAYYYLADHDVAQRHFQKGLRLD-----PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL------ 199 (409)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------ 199 (409)
|.++...|++++|+.++++++.+. ++++....++..++.++... |++++|+.++++++++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ---------GKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999873 44455555888888888777 9999999999999998
Q ss_pred --CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---------hhcHHHHHHHHHHHHhccC------HHHHH
Q 043837 200 --DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN---------EELIEALVQRGEAKLLTED------WEGAV 262 (409)
Q Consensus 200 --~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~------~~~A~ 262 (409)
.|. ...++.++|.++...|++++|+..+++++++. +.....+..++..+...+. +.++.
T Consensus 163 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 163 PDDPN----VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp TTCHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred CCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 444 78899999999999999999999999999873 3445566667766665444 44444
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 263 EDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 263 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
..++.+....|....+...++.+....+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 44444444445555666666666655544
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=5.7e-17 Score=143.15 Aligned_cols=184 Identities=17% Similarity=0.106 Sum_probs=151.1
Q ss_pred CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCChH
Q 043837 68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALLHRGRAYYYLADHD 141 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~ 141 (409)
.+++++|+.+|.+ + +.++...|++++|+..|.+++++.+.. ..++..+|.+|..+|+++
T Consensus 29 ~~~~~~A~~~~~~-a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAK-A--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHH-H--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHH-H--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 5788888888876 2 678889999999999999999986532 457889999999999999
Q ss_pred HHHHHHHHHHccCCCcH---HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc--cchHHHHHHHHH
Q 043837 142 VAQRHFQKGLRLDPEHS---ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT--AHNVHLYLGLCK 216 (409)
Q Consensus 142 ~A~~~~~~al~~~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~la~ 216 (409)
+|+.+|++++.+.+... ....++.+++.++ .. |++++|+.+|++++.+.|... .....++.++|.
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~---------~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 163 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLM---------EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---------TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999998754321 2233555555544 34 999999999999999877532 124678999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcChhc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 217 VLVKLGRGKDALSSCTEALNINEEL------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
++..+|++++|+.+|++++.+.|.+ ..++..++.++..+|++++|+.+|++++ ++|+...
T Consensus 164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9999999999999999999986654 3578889999999999999999999999 9997654
No 111
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.75 E-value=1.8e-16 Score=136.43 Aligned_cols=250 Identities=11% Similarity=0.045 Sum_probs=185.7
Q ss_pred CCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTL-SEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
+|+|..++... -++.|.+ ....+.+.++|+.+|++.... ...+ ....+..-..++. ++ |+..++
T Consensus 26 ~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~-~~~a~~~la~~~~-~~---a~~~l~ 90 (310)
T 3mv2_B 26 TGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSK-LGKVLDLYVQFLD-TK---NIEELE 90 (310)
T ss_dssp TTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSST-THHHHHHHHHHHT-TT---CCHHHH
T ss_pred hhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC-------CCCH-HHHHHHHHHHHhc-cc---HHHHHH
Confidence 58899888844 3344443 356677889999999986432 0000 0001111112222 22 788888
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC-
Q 043837 80 KVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDE--NNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPE- 156 (409)
Q Consensus 80 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~- 156 (409)
+ .+...+....++..+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+
T Consensus 91 ~-l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 91 N-LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp H-TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred H-HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 7 5555556677778999999999999999999999999987 88999999999999999999999999999999884
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837 157 ---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE 233 (409)
Q Consensus 157 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 233 (409)
+.. .+..++..+..+.. ..+++.+|..+|+++....|+.. ....+++ ++..+|++++|...++.
T Consensus 170 ~~~~d~---~l~~Laea~v~l~~-----g~~~~q~A~~~f~El~~~~p~~~--~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 170 VSGDNE---MILNLAESYIKFAT-----NKETATSNFYYYEELSQTFPTWK--TQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHH---HHHHHHHHHHHHHH-----TCSTTTHHHHHHHHHHTTSCSHH--HHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred cccchH---HHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhCCCcc--cHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 122 34444444322211 11389999999999988888611 2234444 89999999999999998
Q ss_pred HHhc----------ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 234 ALNI----------NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 234 al~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++-+...
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 8876 47899999999999999998 8999999999999999886543
No 112
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2e-18 Score=154.94 Aligned_cols=243 Identities=14% Similarity=0.056 Sum_probs=113.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
+|+.++|.++++++ +.+.+|..+|.++...|++++|+..+.+. .....+...+..+...|++++|+.++..
T Consensus 16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 35678888888887 34569999999999999999999999763 3344556666677778999999998876
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
+.+.. .++.+...++.+|.++|++.++.+.++. |+ ..+|..+|..++..|.|++|+.+|.++ .
T Consensus 87 -ark~~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~- 149 (449)
T 1b89_A 87 -ARKKA-RESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------S- 149 (449)
T ss_dssp ------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------T-
T ss_pred -HHHhC-ccchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------h-
Confidence 55543 3377888999999999999999887753 54 459999999999999999999999987 1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
.|..++.++..+ |+|++|++.+.++ . ++.+|...+.++...|+++.|..+... +..+|+
T Consensus 150 --n~~~LA~~L~~L---------g~yq~AVea~~KA-----~----~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad 208 (449)
T 1b89_A 150 --NFGRLASTLVHL---------GEYQAAVDGARKA-----N----STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD 208 (449)
T ss_dssp --CHHHHHHHHHTT---------TCHHHHHHHHHHH-----T----CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH
T ss_pred --hHHHHHHHHHHh---------ccHHHHHHHHHHc-----C----CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh
Confidence 678888888888 9999999999999 2 456999999999999999999887775 446676
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSK 293 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 293 (409)
+. ..+..+|.+.|++++|+.++++++.+++.+..+...+..++...+..+
T Consensus 209 ~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k 258 (449)
T 1b89_A 209 EL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 258 (449)
T ss_dssp HH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH
T ss_pred hH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 63 358889999999999999999999999999999999888776655443
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.5e-17 Score=157.98 Aligned_cols=195 Identities=10% Similarity=-0.011 Sum_probs=176.8
Q ss_pred HHHhCCCc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 043837 64 KLYDSGEY-TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKD----------YASAISETGYLLKEDENNLEALLHRGR 132 (409)
Q Consensus 64 ~~~~~~~~-~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~ 132 (409)
.....+++ ++|+..+++ ++..+|.+..+|+.++.++...++ +++++..++++++.+|++..+|+.++.
T Consensus 37 ~~~~~~~~~eeal~~~~~-~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQ-ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 115 (567)
T ss_dssp HHHHTTCCSHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH-HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455665 567999998 999999999999999999999998 999999999999999999999999999
Q ss_pred HHHhcC--ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcC-CHHHHHHHHHHHHccCCCCccchHH
Q 043837 133 AYYYLA--DHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKG-KLRVAVEDFKAALALDPNHTAHNVH 209 (409)
Q Consensus 133 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~ 209 (409)
++...+ ++++++..+.++++.+|.+.. +|...+.+.... + .+++++++++++++.+|. +..
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~---aW~~R~~~l~~l---------~~~~~~el~~~~~~I~~~p~----n~s 179 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQA---------AVAPAEELAFTDSLITRNFS----NYS 179 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------CCCHHHHHHHHHTTTTTTCC----CHH
T ss_pred HHHHcccccHHHHHHHHHHHHhhcccccc---HHHHHHHHHHHc---------CCChHHHHHHHHHHHHHCCC----Ccc
Confidence 999999 679999999999999999999 899999888887 8 899999999999999999 788
Q ss_pred HHHHHHHHHHHc--------------CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHH------------HHH
Q 043837 210 LYLGLCKVLVKL--------------GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEG------------AVE 263 (409)
Q Consensus 210 ~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~------------A~~ 263 (409)
+|..++.++..+ +.++++++++.+++.++|++..+|+.++.++...+++++ |+.
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSV 259 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEE
Confidence 999999999885 557999999999999999999999999999999998776 666
Q ss_pred HHHHHHhhCCCc
Q 043837 264 DLKSAAQQSPQD 275 (409)
Q Consensus 264 ~~~~al~~~p~~ 275 (409)
+|.+++.++|..
T Consensus 260 ~f~~~i~~~~~~ 271 (567)
T 1dce_A 260 CFSRPLTVGSRM 271 (567)
T ss_dssp EEEEEECTTBTT
T ss_pred Eeccceeccccc
Confidence 678888777763
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.74 E-value=2.6e-18 Score=153.51 Aligned_cols=157 Identities=15% Similarity=0.033 Sum_probs=132.6
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH------------HHHHHHHHHHH
Q 043837 102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS------------ELKKAYFALKN 169 (409)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~~~~l~~ 169 (409)
.++++++|+..+++++..+|..+.++..+|.+++..|++++|+..|++++.++|++. ....++.+++.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888888888888888888888888888888888772 01127788888
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
++... |++++|+.+|+++++++|+ +..+++++|.++..+|++++|+.+|+++++++|++..++..++
T Consensus 205 ~~~~~---------g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 205 CHLKL---------QAFSAAIESCNKALELDSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHc---------CCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 87777 9999999999999999998 7779999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHH-HHHHHHHHhh
Q 043837 250 EAKLLTEDWEGA-VEDLKSAAQQ 271 (409)
Q Consensus 250 ~~~~~~~~~~~A-~~~~~~al~~ 271 (409)
.++..++++++| ...|++++..
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 5567777654
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.73 E-value=1.9e-17 Score=128.48 Aligned_cols=131 Identities=22% Similarity=0.170 Sum_probs=116.1
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
..|++++.++|++.. .++.++.++... |++++|+..|++++..+|+ +..+|..+|.++...|++
T Consensus 5 ~~l~~al~~~p~~~~---~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~ 68 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLE---QLYALGFNQYQA---------GKWDDAQKIFQALCMLDHY----DARYFLGLGACRQSLGLY 68 (142)
T ss_dssp ----CCTTCCHHHHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHcCCHHHHH---HHHHHHHHHHHH---------ccHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHHhhH
Confidence 567788888888877 888888888777 9999999999999999999 778999999999999999
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.......++...++.
T Consensus 69 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877776666665543
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.73 E-value=1.5e-17 Score=144.80 Aligned_cols=194 Identities=11% Similarity=0.056 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY 135 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 135 (409)
...+..|..++..|++++|+..|.+ ++..+|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGR-AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666677777778888888887 788889999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHH
Q 043837 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLC 215 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la 215 (409)
.+|++++|+..|++++.++|++.. .+.......... .++...........|.+ ..+...++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~----~~i~~~l~ 144 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRL---NFGDDIPSALRI------------AKKKRWNSIEERRIHQE----SELHSYLT 144 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC---CCCSHHHHHHHH------------HHHHHHHHHHHTCCCCC----CHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchh---hHHHHHHHHHHH------------HHHHHHHHHHHHHHhhh----HHHHHHHH
Confidence 999999999999999988886532 111000110011 11112222222344442 23444445
Q ss_pred HHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhh
Q 043837 216 KVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLT-EDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 271 (409)
.++ .|++++|++.++++++++|++......++.++... +.+++|.+.|.++.+.
T Consensus 145 ~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 443 68889999999999999998888888787777766 6788888888887664
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.73 E-value=6.3e-17 Score=137.44 Aligned_cols=201 Identities=11% Similarity=-0.029 Sum_probs=161.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHR-------GSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKP 74 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 74 (409)
+++..|+..|.++++++|+..++|..+ +.++..+++..+++..+.
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~---------------------------- 71 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS---------------------------- 71 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH----------------------------
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH----------------------------
Confidence 578999999999999999999999999 666666655544433332
Q ss_pred HHHHHHHHHhhCCCc---------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837 75 LEYIDKVVLVFSPAC---------------------SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA 133 (409)
Q Consensus 75 ~~~~~~~~~~~~p~~---------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 133 (409)
+ .+.+.|.. ..++..++.++...|+|++|.+.|..++...|.+. +++.+|.+
T Consensus 72 -----~-~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l 144 (282)
T 4f3v_A 72 -----G-SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVV 144 (282)
T ss_dssp -----H-TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHH
T ss_pred -----H-HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHH
Confidence 2 33333322 45667789999999999999999999999999888 99999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 213 (409)
++..++|++|+..|+.++... ++.....+++.++.++..+ |++++|+.+|++++... ..|.....++++
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L---------G~~~eAl~~l~~a~~g~-~~P~~~~da~~~ 213 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL---------ALFTEAERRLTEANDSP-AGEACARAIAWY 213 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTST-TTTTTHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHhcCC-CCccccHHHHHH
Confidence 999999999999999877653 2222223789999999888 99999999999998543 212225668999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 214 LCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 214 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
+|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999999999999998 77665553
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.72 E-value=7.6e-17 Score=140.30 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=146.9
Q ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHH
Q 043837 87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFA 166 (409)
Q Consensus 87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 166 (409)
|.++..+..+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++++.++|++.. ++..
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 77 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHFF 77 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---HHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccch-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHH
Q 043837 167 LKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN-VHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEAL 245 (409)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 245 (409)
++.++... |++++|+..|+++++++|+++... ..++..+ . ..++..+........|.+..+.
T Consensus 78 lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~i~ 140 (281)
T 2c2l_A 78 LGQCQLEM---------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--R------IAKKKRWNSIEERRIHQESELH 140 (281)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--H------HHHHHHHHHHHHTCCCCCCHHH
T ss_pred HHHHHHHc---------CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--H------HHHHHHHHHHHHHHHhhhHHHH
Confidence 99999888 999999999999999999753211 1122111 1 1223333334445667777777
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 246 VQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 246 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
..++.++ .|++++|++.++++++++|++..+...+.....
T Consensus 141 ~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 180 (281)
T 2c2l_A 141 SYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEA 180 (281)
T ss_dssp HHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHH
Confidence 7777665 799999999999999999998877776655443
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.72 E-value=6.7e-16 Score=135.34 Aligned_cols=177 Identities=19% Similarity=0.099 Sum_probs=147.4
Q ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHccCCCc---
Q 043837 87 PACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH--- 157 (409)
Q Consensus 87 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--- 157 (409)
|.....+...+..+...|++++|++.+.++++..|.... .++.+|.++...|++++|+.++++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 445566778889999999999999999999998877543 45678999999999999999999999875443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc---cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837 158 SELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA---LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 234 (409)
.....++..+|.++... |++++|+.+|+++++ ..|+++.....+++++|.+|..+|++++|+.+++++
T Consensus 152 ~~~~~~~~~lg~~y~~~---------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 152 YQNLYIENAIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp THHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 22334788888888777 999999999999994 455543323479999999999999999999999999
Q ss_pred HhcChh------cHHHHHHHHHHHHhccCHHHH-HHHHHHHHhhC
Q 043837 235 LNINEE------LIEALVQRGEAKLLTEDWEGA-VEDLKSAAQQS 272 (409)
Q Consensus 235 l~~~p~------~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~ 272 (409)
+++.++ ...+++.+|.+|..+|++++| ..++++++.+.
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 988654 378999999999999999999 88899998764
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=1e-17 Score=130.83 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=60.6
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
++..+|.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.
T Consensus 13 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-- 90 (148)
T 2vgx_A 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR-- 90 (148)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH--
T ss_pred HHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch--
Confidence 455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
+++.++.++... |++++|+..|++++++.|+
T Consensus 91 -~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 91 -FPFHAAECLLQX---------GELAEAESGLFLAQELIAN 121 (148)
T ss_dssp -HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHc---------CCHHHHHHHHHHHHHHCcC
Confidence 455555555444 5555555555555555554
No 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.72 E-value=6.6e-16 Score=118.03 Aligned_cols=133 Identities=32% Similarity=0.467 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205 (409)
Q Consensus 126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 205 (409)
+++.+|.++...|++++|+..+++++..+|++.. .+..++.++... +++++|+..+++++...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~~~--- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQ---------GDYDEAIEYYQKALELDPR--- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh---HHHHHHHHHHHh---------cCHHHHHHHHHHHHHHCCC---
Confidence 3445555555555555555555555555555544 455555555444 5556666666665555555
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 206 HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 206 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
...++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|+..++++++.+|+
T Consensus 68 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 68 -SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred -chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 44466666777777777777777777777777777777777777777777777777777777776664
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.71 E-value=2.2e-17 Score=147.44 Aligned_cols=153 Identities=16% Similarity=0.093 Sum_probs=132.5
Q ss_pred CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 043837 68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---------------LEALLHRGR 132 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~ 132 (409)
..++++|+..+.. ++..+|..+.++..+|.+++..|++++|+..|++++.++|++ ..+++++|.
T Consensus 126 L~~~~~A~~~~~~-a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEM-NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3556667777766 667778888999999999999999999999999999999988 688999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837 133 AYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL 212 (409)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 212 (409)
++..+|++++|+.+|++++.++|++.. +++.++.++..+ |++++|+..|+++++++|+ +..++.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~P~----~~~a~~ 268 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEK---GLSRRGEAHLAV---------NDFELARADFQKVLQLYPN----NKAAKT 268 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCSS----CHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHC---------CCHHHHHHHHHHHHHHCCC----CHHHHH
Confidence 999999999999999999999999988 889999988888 9999999999999999998 677999
Q ss_pred HHHHHHHHcCChhHH-HHHHHHHHhc
Q 043837 213 GLCKVLVKLGRGKDA-LSSCTEALNI 237 (409)
Q Consensus 213 ~la~~~~~~~~~~~A-~~~~~~al~~ 237 (409)
+++.++..++++++| ...|.+++..
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 4566666543
No 123
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.71 E-value=4e-17 Score=125.62 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc--------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA--------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
.++.+......+..++..|+|++|+..|+++++++|+++. ....+|.++|.++..+|++++|+.+|+++|++
T Consensus 7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555555666666669999999999999999998321 13459999999999999999999999999999
Q ss_pred -------ChhcHHHH----HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 043837 238 -------NEELIEAL----VQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKM 291 (409)
Q Consensus 238 -------~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 291 (409)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+..+...++.
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998887777777665543
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=5.5e-17 Score=125.92 Aligned_cols=119 Identities=20% Similarity=0.172 Sum_probs=63.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHH
Q 043837 112 ETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVE 191 (409)
Q Consensus 112 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 191 (409)
.|++++.++|++...++.+|.++...|++++|+..|++++..+|++.. +|..++.++... |++++|+.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~---------g~~~~A~~ 73 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---YFLGLGACRQSL---------GLYEQALQ 73 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHH---------hhHHHHHH
Confidence 344455555555555555555555555555555555555555555555 555555555444 55555555
Q ss_pred HHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHH
Q 043837 192 DFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALV 246 (409)
Q Consensus 192 ~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (409)
.|++++.++|+ ++.+++++|.++..+|++++|+..|+++++++|+++....
T Consensus 74 ~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 74 SYSYGALMDIN----EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHHHHHHHCTT----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHhcCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 55555555555 3345556666666666666666666666665555544333
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=9.4e-16 Score=117.17 Aligned_cols=134 Identities=31% Similarity=0.403 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 170 (409)
.+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...+++++|+..+++++...|.+.. .+..++.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH---HHHHHHHH
Confidence 457778888888888888888888888888888888888888888888888888888888888888776 67777777
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
+... |++++|+..+++++...|. ...++..++.++...|++++|+..+++++..+|+
T Consensus 79 ~~~~---------~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQ---------GDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHh---------cCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 6666 8888888888888888887 5668888888888888888888888888888775
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=2.2e-15 Score=125.30 Aligned_cols=189 Identities=14% Similarity=-0.008 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 043837 5 SEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLV 84 (409)
Q Consensus 5 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 84 (409)
.+|+..|+++.+. .++.+++.+|.+|...++++ +|+.+|++ +..
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~---------------------------------~A~~~~~~-a~~ 46 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQ---------------------------------KAEYWAQK-AAA 46 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHH---------------------------------HHHHHHHH-HHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHH---------------------------------HHHHHHHH-HHH
Confidence 4678888888876 67888888888887665544 45555544 332
Q ss_pred hCCCcHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC
Q 043837 85 FSPACSKAKLLKVKLLLAAK----DYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQRHFQKGLRLDPE 156 (409)
Q Consensus 85 ~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~ 156 (409)
+.++.+++.+|.+|.. + ++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+.+|++++...|.
T Consensus 47 --~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 47 --QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp --TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred --cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 3578899999999988 7 89999999999965 5789999999999998 89999999999999998874
Q ss_pred --cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-C-----ChhHHH
Q 043837 157 --HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-G-----RGKDAL 228 (409)
Q Consensus 157 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-~-----~~~~A~ 228 (409)
++. ++..++.++..-. -..+++++|+.+|+++++. |. +..+++++|.+|... + ++++|+
T Consensus 122 ~~~~~---a~~~Lg~~y~~g~-----g~~~d~~~A~~~~~~A~~~-~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~ 188 (212)
T 3rjv_A 122 DAAVD---AQMLLGLIYASGV-----HGPEDDVKASEYFKGSSSL-SR----TGYAEYWAGMMFQQGEKGFIEPNKQKAL 188 (212)
T ss_dssp HHHHH---HHHHHHHHHHHTS-----SSSCCHHHHHHHHHHHHHT-SC----TTHHHHHHHHHHHHCBTTTBCCCHHHHH
T ss_pred cchHH---HHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHcCCCCCCCCCHHHHH
Confidence 355 8899999887610 0018999999999999998 44 345889999999864 3 899999
Q ss_pred HHHHHHHhcChhcHHHHHHHH
Q 043837 229 SSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~la 249 (409)
.+|+++++... ..+...++
T Consensus 189 ~~~~~A~~~g~--~~A~~~l~ 207 (212)
T 3rjv_A 189 HWLNVSCLEGF--DTGCEEFD 207 (212)
T ss_dssp HHHHHHHHHTC--HHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHH
Confidence 99999998743 34444443
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6e-16 Score=117.30 Aligned_cols=113 Identities=16% Similarity=0.272 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (409)
.+..+|..+... |++++|+..|+++++++|+ +..++.++|.++..+|++++|+..++++++++|+++
T Consensus 6 ~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 6 EARLEGKEYFTK---------SDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 566666666555 9999999999999999999 778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHH
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQS------PQDMNIREALMRAEKA 288 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 288 (409)
.+++.+|.++..+|++++|+..|+++++++ |++..+...+..+...
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 9999988888877654
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.69 E-value=9.8e-16 Score=127.47 Aligned_cols=135 Identities=20% Similarity=0.208 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL 171 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 171 (409)
.++.+|.++...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++.++|++.. ++..++.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---AYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---HHHHHHHHH
Confidence 34555566666666666666666554 22 4555666666666666666666666666666665555 555555555
Q ss_pred HHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 172 KKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA------------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
... |++++|+..|++++++.|.+.. ....+++++|.++...|++++|+..++++++++|
T Consensus 82 ~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQT---------EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHT---------TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHc---------ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 555 6666666666666665555321 1345555566666666666666666666665555
Q ss_pred hc
Q 043837 240 EL 241 (409)
Q Consensus 240 ~~ 241 (409)
++
T Consensus 153 ~~ 154 (213)
T 1hh8_A 153 EP 154 (213)
T ss_dssp SG
T ss_pred cc
Confidence 43
No 129
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=1.2e-14 Score=145.17 Aligned_cols=233 Identities=12% Similarity=0.055 Sum_probs=156.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 1 MKHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 1 lg~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
+|++++|+..|.++ +++..|..++.++.++|++++|+..+..+.............+..+.+.+++++ ++.|.+
T Consensus 1118 ~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI~ 1191 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFIN 1191 (1630)
T ss_pred CCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHHh
Confidence 47899999999876 889999999999999999999999998877655443333457788888888774 444422
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHH
Q 043837 81 VVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSEL 160 (409)
Q Consensus 81 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (409)
.++ ...+..+|.++...|+|++|+.+|.++ ..|..++.++..+|++++|++.++++.. ..
T Consensus 1192 -----~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n-----~~- 1251 (1630)
T 1xi4_A 1192 -----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS-----TR- 1251 (1630)
T ss_pred -----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-----HH-
Confidence 333 455667999999999999999999986 4788899999999999999999998833 23
Q ss_pred HHHHHHHHHHHHHH---------------------HHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHH
Q 043837 161 KKAYFALKNLLKKT---------------------KSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLV 219 (409)
Q Consensus 161 ~~~~~~l~~~~~~~---------------------~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~ 219 (409)
+|..++.+.... ..+..+...|.+++|+.+++.++.+++. ....+..++.++.
T Consensus 1252 --aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera----H~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 --TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA----HMGMFTELAILYS 1325 (1630)
T ss_pred --HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh----HhHHHHHHHHHHH
Confidence 444444443332 1122223335666666666666665555 4445555555544
Q ss_pred Hc--CChhHHHHHHHHHHhcCh-----hcHHHHHHHHHHHHhccCHHHHHHHH
Q 043837 220 KL--GRGKDALSSCTEALNINE-----ELIEALVQRGEAKLLTEDWEGAVEDL 265 (409)
Q Consensus 220 ~~--~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~ 265 (409)
+- ++..++++.|...+.+.| .+...|..+..+|.+-++|+.|+...
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 32 344555555555555544 45555555556666666666555433
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.68 E-value=6.3e-17 Score=133.25 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN 169 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 169 (409)
+......+.+....+++++|.+.+.......+.....+..+|.+++..+++++|+..|++++.+.|.++.. ... .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~--~ 78 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW---DDQ--I 78 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC---CCH--H
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc---chh--h
Confidence 33444556677778888888888888777777778889999999999999999999999999988877620 000 0
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
. .... ..+ ...++.++|.++..+|++++|+.+++++++++|+++.+++.+|
T Consensus 79 ----~---------~~~~-------~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 129 (198)
T 2fbn_A 79 ----L---------LDKK-------KNI---------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG 129 (198)
T ss_dssp ----H---------HHHH-------HHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred ----H---------HHHH-------HHH---------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 0 0000 000 2346666777777777777777777777777777777777777
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcch
Q 043837 250 EAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKR 294 (409)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 294 (409)
.++..+|++++|+.+|+++++++|++..++..+..+...++...+
T Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 130 VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777766666666665554443
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.68 E-value=2.4e-15 Score=131.82 Aligned_cols=171 Identities=18% Similarity=0.106 Sum_probs=141.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH---HHHH
Q 043837 93 KLLKVKLLLAAKDYASAISETGYLLKEDENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE---LKKA 163 (409)
Q Consensus 93 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 163 (409)
+...+..+...+++++|+..++++++..+..+. .+..+|.++...+++++|+.++++++.+.+.... ...+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344578889999999999999999998877665 2335899999999999999999999986543322 2346
Q ss_pred HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC---CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD---PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
+..+|.++... |++++|+.+|+++++.. |.+......+++++|.+|..+|++++|+.++++++++.+.
T Consensus 158 ~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 158 ENAIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 78888888777 99999999999999632 2233336779999999999999999999999999998765
Q ss_pred c------HHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhC
Q 043837 241 L------IEALVQRGEAKLLTE-DWEGAVEDLKSAAQQS 272 (409)
Q Consensus 241 ~------~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~ 272 (409)
. +.++..+|.++..+| ++++|+.+|++++.+.
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 4 789999999999999 5799999999999764
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.68 E-value=3.4e-16 Score=126.31 Aligned_cols=134 Identities=16% Similarity=0.246 Sum_probs=96.2
Q ss_pred HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHH
Q 043837 135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGL 214 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 214 (409)
...+++++|+..+++++..+|++.. ++..++.++... |++++|+.+|+++++++|+ +..++..+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~----~~~~~~~l 84 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSE---QWALLGEYYLWQ---------NDYSNSLLAYRQALQLRGE----NAELYAAL 84 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHCS----CHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC----CHHHHHHH
Confidence 3445666666666666666666665 666666666555 6666666666666666666 55577788
Q ss_pred HHH-HHHcCCh--hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 215 CKV-LVKLGRG--KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 215 a~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
|.+ +...|++ ++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++......+..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 888 7788887 888888888888888888888888888888888888888888888888887655444433
No 133
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=6.8e-16 Score=138.57 Aligned_cols=228 Identities=14% Similarity=0.088 Sum_probs=115.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKV 81 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 81 (409)
|+|++|+.+++.+++..++ +.+...++.+|.++|++.++...+.. +....+...+..++..|.|++|+.+|.+
T Consensus 75 g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~- 147 (449)
T 1b89_A 75 GNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNN- 147 (449)
T ss_dssp -----------------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 3444444444444432222 33334444444444444443333221 1112444555555666666666666654
Q ss_pred HHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 82 VLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 82 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
+ ..|..+|.|+.++|++++|++.++++ +++.+|.....++...|+++.|..+... +...|++
T Consensus 148 a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---- 209 (449)
T 1b89_A 148 V--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---- 209 (449)
T ss_dssp T--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH----
T ss_pred h--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh----
Confidence 1 34566666666666666666666666 3456666666666666666666554443 2233322
Q ss_pred HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc--CChhHHHHHHHHHHhcCh
Q 043837 162 KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL--GRGKDALSSCTEALNINE 239 (409)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p 239 (409)
...+..+|... |++++|+.++++++.+++. ...++..++.+|.+- ++..+.++.|...+.+.|
T Consensus 210 --l~~lv~~Yek~---------G~~eEai~lLe~aL~le~a----h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 210 --LEELINYYQDR---------GYFEELITMLEAALGLERA----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp --HHHHHHHHHHT---------TCHHHHHHHHHHHTTSTTC----CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred --HHHHHHHHHHC---------CCHHHHHHHHHHHhCCcHH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 22344444444 8999999999999998887 566888888777654 466777777777777777
Q ss_pred -----hcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 043837 240 -----ELIEALVQRGEAKLLTEDWEGAVEDLKSAA 269 (409)
Q Consensus 240 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~al 269 (409)
.++..|..+..+|.+.++|+.|+...-...
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 778888899999999999999987654443
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=1.2e-14 Score=127.25 Aligned_cols=175 Identities=15% Similarity=0.079 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---
Q 043837 53 LQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS------KAKLLKVKLLLAAKDYASAISETGYLLKEDENN--- 123 (409)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--- 123 (409)
.........+..++..++|++|+..+.+ ++...|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWN-ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHH-HhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 3445567788899999999999999998 677666543 446778999999999999999999999876543
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHH---ccCCCcHHHH-HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Q 043837 124 ---LEALLHRGRAYYYLADHDVAQRHFQKGL---RLDPEHSELK-KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA 196 (409)
Q Consensus 124 ---~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 196 (409)
..++..+|.+|..+|++++|+.+|++++ ...|++.... .++.+++.++... |++++|+.+++++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~---------~~y~~Al~~~~ka 222 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD---------SRYEESLYQVNKA 222 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH---------hhHHHHHHHHHHH
Confidence 5688999999999999999999999999 4556554322 5788888888877 9999999999999
Q ss_pred HccCCC--CccchHHHHHHHHHHHHHcCChhHH-HHHHHHHHhc
Q 043837 197 LALDPN--HTAHNVHLYLGLCKVLVKLGRGKDA-LSSCTEALNI 237 (409)
Q Consensus 197 l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 237 (409)
+++.++ +......+++++|.++..+|++++| ..++++++.+
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 987543 2222478999999999999999999 7889999875
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-15 Score=114.67 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..+..+|.+++..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..+++++.++|++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 334444444444444444444444444444444444444444444444444444444444444444433
No 136
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.66 E-value=1.5e-15 Score=120.66 Aligned_cols=119 Identities=19% Similarity=0.314 Sum_probs=102.5
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHcc--------CCCCc------cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALAL--------DPNHT------AHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE 240 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 240 (409)
..|..++..|+|++|+..|++++.+ .|.++ .....++.++|.++..+|++++|+.+|+++++++|+
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 3344555559999999999999998 22211 116789999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHhhcc
Q 043837 241 LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM-NIREALMRAEKALKMSK 293 (409)
Q Consensus 241 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~ 293 (409)
++.+++.+|.++..+|++++|+.+|+++++++|+++ .+...+..+...++..+
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 77888888877766543
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=8.4e-15 Score=121.79 Aligned_cols=137 Identities=16% Similarity=0.187 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA 133 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 133 (409)
.....+..|..++..|++++|+..|.+ ++ +| ++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~-a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSA-VQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHT-SS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHH-Hc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 345568889999999999999999988 43 33 789999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCcH-------------HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPEHS-------------ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD 200 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 200 (409)
+..+|++++|+..|++++.+.|.+. ....++..++.++... |++++|+..+++++++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK---------EEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcC
Confidence 9999999999999999999888765 1222889999998888 99999999999999999
Q ss_pred CCC
Q 043837 201 PNH 203 (409)
Q Consensus 201 ~~~ 203 (409)
|++
T Consensus 152 p~~ 154 (213)
T 1hh8_A 152 SEP 154 (213)
T ss_dssp CSG
T ss_pred ccc
Confidence 983
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.65 E-value=3.3e-15 Score=113.24 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL- 241 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~- 241 (409)
++.++|.++... |+|++|+.+|+++++++|+ ++.++.++|.+|..+|++++|+..|+++++++|++
T Consensus 10 a~~~lG~~~~~~---------~~~~~A~~~y~~Al~~~p~----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 10 AEKDLGNAAYKQ---------KDFEKAHVHYDKAIELDPS----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 556666666555 9999999999999999999 78899999999999999999999999999998875
Q ss_pred ------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 043837 242 ------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMR 284 (409)
Q Consensus 242 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 284 (409)
..++..+|.++..++++++|+++|+++++..|+ +++...+..
T Consensus 77 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 77 ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 468899999999999999999999999999886 454444443
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.65 E-value=2.3e-15 Score=121.43 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=115.8
Q ss_pred HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhcCCh--H
Q 043837 65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRA-YYYLADH--D 141 (409)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~--~ 141 (409)
+...+++++|+..+.+ ++..+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQD-KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHH-HHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567899999999998 8999999999999999999999999999999999999999999999999999 8899999 9
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCc
Q 043837 142 VAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHT 204 (409)
Q Consensus 142 ~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 204 (409)
+|+..+++++..+|++.. ++..++.++... |++++|+..++++++++|+++
T Consensus 99 ~A~~~~~~al~~~p~~~~---~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEIT---ALMLLASDAFMQ---------ANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHH---HHHHHHHHHHHc---------ccHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999988 899999998888 999999999999999999854
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=6e-15 Score=140.22 Aligned_cols=173 Identities=14% Similarity=0.019 Sum_probs=159.9
Q ss_pred HccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837 102 AAKD-YASAISETGYLLKEDENNLEALLHRGRAYYYLAD----------HDVAQRHFQKGLRLDPEHSELKKAYFALKNL 170 (409)
Q Consensus 102 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 170 (409)
..++ .++|+..+.+++.++|++..+|+.++.++..+++ +++++..+.+++..+|++.. +|...+.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---aW~hR~w~ 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TWHHRCWL 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHH
Confidence 3444 4688999999999999999999999999999998 99999999999999999999 99999999
Q ss_pred HHHHHHHhhHHhcC--CHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcChhcHHHHHH
Q 043837 171 LKKTKSAEDNVSKG--KLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG-RGKDALSSCTEALNINEELIEALVQ 247 (409)
Q Consensus 171 ~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 247 (409)
+..+ + ++++++..++++++++|. +..+|..++.++...+ .+++++++++++++.+|.+..+|..
T Consensus 117 l~~l---------~~~~~~~el~~~~k~l~~d~~----N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 117 LSRL---------PEPNWARELELCARFLEADER----NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp HHTC---------SSCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred HHHc---------ccccHHHHHHHHHHHHhhccc----cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 8877 8 779999999999999999 8889999999999999 8999999999999999999999999
Q ss_pred HHHHHHhc--------------cCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 248 RGEAKLLT--------------EDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 248 la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
++.++..+ +.+++|++++.+++.++|++..++..+..+.....
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 99998885 67899999999999999999999998888775533
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.65 E-value=6.4e-15 Score=117.12 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccc
Q 043837 127 LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAH 206 (409)
Q Consensus 127 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 206 (409)
+..+|.++...|++++|+..|++++..+|++.. ++..++.++... +++++|+..++++++++|+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~a~~~~~~---- 79 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---YYGNRSLAYLRT---------ECYGYALGDATRAIELDKK---- 79 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcc----
Confidence 344444444444444444444444444444433 444444444333 4444444444444444444
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHH--HHHhccCHHHHHHHHHHHHhh
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGE--AKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~~~~~~A~~~~~~al~~ 271 (409)
+..++..+|.++...|++++|+.+++++++++|.+..++..++. .+...|++++|+..+.++..+
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 34456666666666666666666666666666666655533333 356666677777666655443
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=1.2e-15 Score=125.42 Aligned_cols=149 Identities=21% Similarity=0.222 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHcCChHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH----------
Q 043837 22 SEAYFHRGSVLRQLCRVKARNSVAEKELS-QLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS---------- 90 (409)
Q Consensus 22 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~---------- 90 (409)
+......+.+...+++++.|...+..... ....+..+...|..++..++|++|+..|.+ ++...|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKE-ALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTTTCTTCCCHHHHHH
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHhcccccchhhHHHH
Confidence 34444556677778888888666655444 344567788899999999999999999999 888888876
Q ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837 91 ------KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAY 164 (409)
Q Consensus 91 ------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 164 (409)
.++..+|.++..+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+.+|++++.++|++.. ++
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 159 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD---IR 159 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---HH
Confidence 899999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred HHHHHHHHHH
Q 043837 165 FALKNLLKKT 174 (409)
Q Consensus 165 ~~l~~~~~~~ 174 (409)
..++.++..+
T Consensus 160 ~~l~~~~~~~ 169 (198)
T 2fbn_A 160 NSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888777
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=2.3e-15 Score=119.83 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcH
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELI 242 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (409)
.+..++.++... +++++|+.+|+++++++|+ +..++.++|.++..+|++++|+.+|+++++++|+++
T Consensus 13 ~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 79 (164)
T 3sz7_A 13 KLKSEGNAAMAR---------KEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS 79 (164)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCc----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 777787777776 9999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHH
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN--IREALMRAEK 287 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~ 287 (409)
.+++.+|.++..+|++++|+.+|+++++++|++.. +...+..+..
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR 126 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 4444444443
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=1.4e-14 Score=126.96 Aligned_cols=172 Identities=15% Similarity=0.058 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK------AKLLKVKLLLAAKDYASAISETGYLLKEDENN------ 123 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 123 (409)
......+..++..+++++|+..+.+ ++...+..+. .+..++.++...+++++|+..+++++.+.+..
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWN-ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH-HhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 3344567888999999999999999 7776665544 34458899999999999999999999965442
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRL----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL 199 (409)
Q Consensus 124 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 199 (409)
..++..+|.+|..+|++++|+.+|++++.. ..+......++.+++.++..+ |++++|+.++++++++
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~---------~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD---------SRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHH
Confidence 337899999999999999999999999952 133444555888999998888 9999999999999997
Q ss_pred CCCC--ccchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhc
Q 043837 200 DPNH--TAHNVHLYLGLCKVLVKLGR-GKDALSSCTEALNI 237 (409)
Q Consensus 200 ~~~~--~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~ 237 (409)
.+.. ....+.++.++|.++..+|+ +++|+.+|++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 6542 12247899999999999995 69999999999976
No 145
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.64 E-value=1.6e-16 Score=147.86 Aligned_cols=148 Identities=17% Similarity=0.089 Sum_probs=96.0
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH------------HHHHHHHHHH
Q 043837 102 AAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE------------LKKAYFALKN 169 (409)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~~~~l~~ 169 (409)
.++++++|+..++.++...|.....+..+|.+++..+++++|+..|++++.++|.+.. ...++.+++.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888899999999999999999999888887631 0114445555
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHH
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRG 249 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 249 (409)
++..+ +++++|+.+|+++++++|+ +..+++++|.+|..++++++|+.+|+++++++|++..++..++
T Consensus 326 ~~~~~---------g~~~~A~~~~~~al~~~p~----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 326 CYLKL---------REYTKAVECCDKALGLDSA----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp HHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred HHHHh---------cCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 54444 6666666666666666555 4555566666666666666666666666666665555666666
Q ss_pred HHHHhccCHHHHH
Q 043837 250 EAKLLTEDWEGAV 262 (409)
Q Consensus 250 ~~~~~~~~~~~A~ 262 (409)
.++..++++++|.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555544
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.64 E-value=8.8e-15 Score=116.33 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN 169 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 169 (409)
+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|++.. ++..++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHH
Confidence 3445555666666666666666666666666666666666666666666666666666666666665555 5555555
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHH--HHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLY--LGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
++... |++++|+.++++++++.|++ ..++ ..++..+...|++++|+..+.++..
T Consensus 90 ~~~~~---------~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMAL---------GKFRAALRDYETVVKVKPHD----KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHT---------TCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh---------ccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 55555 66666666666666666552 2233 3333335556666666666655543
No 147
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.64 E-value=8.5e-17 Score=115.52 Aligned_cols=68 Identities=57% Similarity=0.933 Sum_probs=61.9
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
.++|++|+|.+.++.++|+++|+++++++|||++... ..++++|+.|++||++|+||.+|..||....
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 5789999999999999999999999999999998753 3577899999999999999999999998554
No 148
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.63 E-value=1.9e-15 Score=116.26 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC-------cHH-----HHHHHHHHHHHccCHHHHHHHHHHH
Q 043837 49 LSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPA-------CSK-----AKLLKVKLLLAAKDYASAISETGYL 116 (409)
Q Consensus 49 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a 116 (409)
+.....+..++..+..++..|+|++|+..|++ ++..+|. +.. +|.++|.++..+|++++|+.+|+++
T Consensus 5 ~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~k-AL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRR-AMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33455677788999999999999999999999 8999998 443 9999999999999999999999999
Q ss_pred Hhh-------CCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 117 LKE-------DENNLEAL----LHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 117 l~~-------~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
|++ +|++..+| +++|.++..+|++++|+..|+++++++|++..
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 999 99999999 99999999999999999999999999998876
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-15 Score=112.10 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..+..++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...+++++|+.++++++..+|++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 344444444555555555555555555555444444444444444444444444444444444444444433
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=5.1e-15 Score=117.79 Aligned_cols=71 Identities=24% Similarity=0.180 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
.+..++.+|.+++..|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+.+|++++.++|++..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555554443
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-15 Score=111.63 Aligned_cols=122 Identities=15% Similarity=0.242 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL 199 (409)
Q Consensus 120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 199 (409)
.|..+.+++.+|.++...+++++|+..|++++..+|++.. ++..++.++... +++++|+.++++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---LYSNRAACYTKL---------LEFQLALKDCEECIQL 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH---HHHHHHHHHTTT---------TCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHh---------ccHHHHHHHHHHHHHh
Confidence 4566778888888888888888888888888888888877 888888888776 8888888888888888
Q ss_pred CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccC
Q 043837 200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTED 257 (409)
Q Consensus 200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 257 (409)
.|+ ...++..+|.++...|++++|+.++++++..+|.+..++..++.++..+|+
T Consensus 80 ~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 EPT----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred CCC----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888 667888888888888888888888888888888888888888888887664
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.62 E-value=7.9e-15 Score=111.36 Aligned_cols=123 Identities=23% Similarity=0.233 Sum_probs=80.6
Q ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837 86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165 (409)
Q Consensus 86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 165 (409)
+|..+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...+++++|+..+++++..+|++.. ++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 84 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK---AYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH---HHH
Confidence 34456666777777777777777777777777777777777777777777777777777777777776666655 555
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG 224 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~ 224 (409)
.++.++... +++++|+.++++++++.|+ +..++..++.++..+|++
T Consensus 85 ~~~~~~~~~---------~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSL---------NKHVEAVAYYKKALELDPD----NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh---------CCHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHhcC
Confidence 555555555 6666666666666666665 444556666666655554
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.62 E-value=4.3e-15 Score=112.59 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH----HHHH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE----LKKA 163 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~ 163 (409)
+.+.++..+|.+++..|+|++|+..|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|++.. ...+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999998876543 2223
Q ss_pred HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
+..+|.++..+ +++++|+.+|++++...|+
T Consensus 86 ~~~lg~~~~~~---------~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQ---------NDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHT---------TCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhhCcC
Confidence 44444444444 6666666666666665554
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.62 E-value=7.9e-16 Score=143.28 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=118.1
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN---------------LEALLHRGRA 133 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~ 133 (409)
+++++|+..+.. ++...|..+..+..+|.+++..|+|++|+..|+++++++|.+ ..+|+++|.+
T Consensus 248 ~~~~~A~~~~~~-~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEM-DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGS-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhc-CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665 666677788888888888888888888888888888888887 6788889999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHH
Q 043837 134 YYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLG 213 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 213 (409)
|..++++++|+.+|++++.++|++.. ++++++.++..+ +++++|+..|+++++++|+ +..++.+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~~g~a~~~~---------g~~~~A~~~~~~al~l~P~----~~~a~~~ 390 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEK---GLYRRGEAQLLM---------NEFESAKGDFEKVLEVNPQ----NKAARLQ 390 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHTTC--------CHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC----CHHHHHH
Confidence 99999999999999999999988887 888888888877 8999999999999999888 5668888
Q ss_pred HHHHHHHcCChhHHHHH
Q 043837 214 LCKVLVKLGRGKDALSS 230 (409)
Q Consensus 214 la~~~~~~~~~~~A~~~ 230 (409)
++.++..++++++|...
T Consensus 391 l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888777643
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.62 E-value=1.3e-14 Score=111.45 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=109.4
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837 153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232 (409)
Q Consensus 153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 232 (409)
.+|.+.. .+..++.++... |++++|+..|++++.++|+ +..++.++|.++..+|++++|+..++
T Consensus 4 ~~~~~~~---~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 4 MKSPSAQ---ELKEQGNRLFVG---------RKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp --CCCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccccHH---HHHHHHHHHHHh---------CcHHHHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455666 788888888777 9999999999999999999 77899999999999999999999999
Q ss_pred HHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHHh
Q 043837 233 EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ-----DMNIREALMRAEKALK 290 (409)
Q Consensus 233 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~ 290 (409)
++++++|+++.+++.+|.++..+|++++|+..|+++++++|+ +..+...+..+.....
T Consensus 68 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 68 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 7778877777765543
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.61 E-value=6.7e-15 Score=111.76 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL 199 (409)
Q Consensus 120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 199 (409)
+|.++..+..+|.++...+++++|+..+++++..+|++.. ++..++.++... +++++|+.++.+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---YFCNRAAAYSKL---------GNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHh---------hchHHHHHHHHHHHhc
Confidence 3444556667777777777777777777777777766665 666666666555 6677777777777666
Q ss_pred CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCH
Q 043837 200 DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDW 258 (409)
Q Consensus 200 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 258 (409)
.|+ ...++..+|.++...|++++|+.+++++++++|++..++..++.++..+|++
T Consensus 76 ~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 DPA----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred Ccc----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 666 4556666666666667777777777766666666666666666666666553
No 157
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.60 E-value=9.3e-16 Score=107.48 Aligned_cols=66 Identities=44% Similarity=0.774 Sum_probs=60.1
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
...++|++|+|.+.++.++|+++|+++++.+|||++... .+.|+.|++||++|+||.+|..||...
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 457899999999999999999999999999999998664 348999999999999999999999854
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.60 E-value=9.9e-15 Score=109.52 Aligned_cols=101 Identities=10% Similarity=-0.011 Sum_probs=90.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL 137 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 137 (409)
.+..|..++..|++++|+..|++ ++..+|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEA-VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46788888899999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCCCcHH
Q 043837 138 ADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~ 159 (409)
|++++|+..++++++++|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999998653
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.60 E-value=2.4e-14 Score=113.59 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhh------------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVF------------------SPACSKAKLLKVKLLLAAKDYASAISETGYL 116 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 116 (409)
+..+...|..++..|+|++|+..|.+ ++.. +|....++.++|.|+..+|++++|+..++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRD-ALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34445556666666666666666665 4544 6777899999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHHHHH
Q 043837 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS-ELKKAYFALKNLLKKT 174 (409)
Q Consensus 117 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~l~~~~~~~ 174 (409)
++++|+++.+++.+|.++..+|++++|+..|++++.++|++. . +...+..+...+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV---VAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 4 455555554443
No 160
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=106.32 Aligned_cols=68 Identities=57% Similarity=0.996 Sum_probs=64.2
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
..++|++|+|.+.++.++|+++|+++++.+|||+.......++++|+.|++||++|+||.+|..||..
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRA 75 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 46899999999999999999999999999999998877778999999999999999999999999984
No 161
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=107.22 Aligned_cols=71 Identities=41% Similarity=0.688 Sum_probs=63.8
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCCc
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGEDI 364 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~~ 364 (409)
...++|++|+|.+.++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||.....
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC-SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 346899999999999999999999999999999998654 36788999999999999999999999986543
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.59 E-value=2.7e-14 Score=117.60 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=116.3
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHH
Q 043837 101 LAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSA 177 (409)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~ 177 (409)
+..|++++|...++.+....+....++..+|.++...|++++|+.++++++.+.. +......++..++.++...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--- 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA--- 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---
Confidence 4456777777644444332224566777777777777777777777777776321 2233334666677766666
Q ss_pred hhHHhcCCHHHHHHHHHHHHcc---CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh------cHHHHHHH
Q 043837 178 EDNVSKGKLRVAVEDFKAALAL---DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE------LIEALVQR 248 (409)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l 248 (409)
|++++|+.++.+++.+ .++++.....++.++|.++...|++++|+.++++++.+.+. ...++..+
T Consensus 80 ------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 80 ------GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8888888888888776 33322225678999999999999999999999999976432 24557899
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 249 GEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 249 a~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
|.++...|++++|+.++++++++...
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.59 E-value=6e-14 Score=115.47 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=131.4
Q ss_pred HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhcC
Q 043837 65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE------DENNLEALLHRGRAYYYLA 138 (409)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~ 138 (409)
++..|++++|...+.. +....+....++..+|.++...|++++|+..+++++.+ .|....++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQA-LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHH-HHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3567888888885543 33333367899999999999999999999999999983 4445678899999999999
Q ss_pred ChHHHHHHHHHHHcc---CCCcH-HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHHHH
Q 043837 139 DHDVAQRHFQKGLRL---DPEHS-ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHLYL 212 (409)
Q Consensus 139 ~~~~A~~~~~~al~~---~p~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~ 212 (409)
++++|+.++++++.+ .+++. ....++..++.++... |++++|+.++++++.+.+. ++.....++.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF---------GDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999987 55333 4445788888888888 9999999999999986432 2222456778
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 213 GLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 213 ~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
++|.++...|++++|+.++++++++..
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998744
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=1.3e-14 Score=108.84 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837 164 YFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243 (409)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 243 (409)
++.++.++... |++++|+..|+++++.+|+ +..+|+.+|.++...|++++|+..|+++++++|+++.
T Consensus 20 ~~~~g~~~~~~---------g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 20 PMEEGLSMLKL---------ANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp HHHHHHHHHHT---------TCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 44555555555 9999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 244 ALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 244 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
++..+|.++...|++++|+..|+++++++|++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998754
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.59 E-value=3e-14 Score=109.42 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=57.0
Q ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q 043837 86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYF 165 (409)
Q Consensus 86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 165 (409)
+|.++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..++++++|+..+++++.++|++.. ++.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 81 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHF 81 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH---HHH
Confidence 34555555666666666666666666666666666665555556666665555555555555555555555544 444
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP 201 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 201 (409)
.++.++... |++++|+..|++++++.|
T Consensus 82 ~l~~~~~~~---------~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 82 FLGQCQLEM---------ESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHT---------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------hhHHHHHHHHHHHHHHCh
Confidence 444444444 444444444444444444
No 166
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.57 E-value=1e-13 Score=104.17 Aligned_cols=70 Identities=36% Similarity=0.396 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 78 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence 4445555555555555555555555555555555555555555555555555555555555444444443
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.57 E-value=1.4e-13 Score=103.46 Aligned_cols=121 Identities=36% Similarity=0.489 Sum_probs=85.1
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 120 DENN-LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 120 ~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
+|.. ..+++.+|.++...+++++|+..+++++..+|++.. ++..++.++... +++++|+..+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQ---------GDYDEAIEYYQKALE 71 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHH
Confidence 3444 556777777777777777777777777777777666 667777776666 777777777777777
Q ss_pred cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE 256 (409)
Q Consensus 199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 256 (409)
..|. ...++..+|.++...|++++|+..+++++..+|+++.++..++.++...|
T Consensus 72 ~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 72 LDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7776 45567777777777777777777777777777777777777777766543
No 168
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=100.92 Aligned_cols=69 Identities=55% Similarity=0.932 Sum_probs=64.8
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..++|++|+|.+.++.++|+++|+++++.+|||+.......++++|+.|++||++|+||.+|..||...
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 468999999999999999999999999999999998877789999999999999999999999999853
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.56 E-value=2.7e-13 Score=100.71 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAY 134 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 134 (409)
...++..|..++..|++++|+..+.+ ++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSE-AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45567788888889999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837 135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL 171 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 171 (409)
...|++++|+..+++++..+|++.. ++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQ---LKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHH---HHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHH---HHHHHHHhh
Confidence 9999999999999999999999988 676666553
No 170
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.3e-15 Score=101.77 Aligned_cols=67 Identities=52% Similarity=0.847 Sum_probs=62.3
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..++|++|+|.+.++.++|+++|+++++.+|||++.. ..++++|+.|++||++|+||.+|..||...
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 4689999999999999999999999999999999874 578899999999999999999999999853
No 171
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=105.86 Aligned_cols=67 Identities=58% Similarity=0.955 Sum_probs=63.5
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
.++|++|+|.+.++.++|+++|+++++.+|||++......+++.|+.|++||++|+||.+|..||..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~ 68 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRY 68 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 4789999999999999999999999999999998887778999999999999999999999999984
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=2.6e-13 Score=100.77 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837 210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRE 280 (409)
Q Consensus 210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 280 (409)
++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++.
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444433333
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-13 Score=105.54 Aligned_cols=121 Identities=22% Similarity=0.199 Sum_probs=106.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHH
Q 043837 153 LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCT 232 (409)
Q Consensus 153 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 232 (409)
.+|.+.. .+..++..+... +++++|+..|+++++..|+++. ...++.++|.++...+++++|+..++
T Consensus 23 ~~~~~~~---~~~~~a~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~ 89 (148)
T 2dba_A 23 PGASSVE---QLRKEGNELFKC---------GDYGGALAAYTQALGLDATPQD-QAVLHRNRAACHLKLEDYDKAETEAS 89 (148)
T ss_dssp TTCCCHH---HHHHHHHHHHTT---------TCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHH---HHHHHHHHHHHh---------CCHHHHHHHHHHHHHHcccchH-HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3455555 677777777666 9999999999999999998321 27899999999999999999999999
Q ss_pred HHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 233 EALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 233 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
+++.++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887776653
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-13 Score=105.43 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=80.0
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 119 EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 119 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
.+|.+...++.+|.++...|++++|+..|++++..+|++.....++..++.++... +++++|+..++++++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL---------EDYDKAETEASKAIE 93 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH---------ccHHHHHHHHHHHHh
Confidence 34555666666666666666666666666666666666532223666666666555 677777777777777
Q ss_pred cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKL 253 (409)
Q Consensus 199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 253 (409)
+.|+ +..+++.+|.++...|++++|+.+++++++++|++..++..++.+..
T Consensus 94 ~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 94 KDGG----DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HTSC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred hCcc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 6666 45567777777777777777777777777777777766666666543
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=5.8e-13 Score=114.60 Aligned_cols=267 Identities=15% Similarity=0.087 Sum_probs=181.1
Q ss_pred HHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHH
Q 043837 30 SVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASA 109 (409)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 109 (409)
+-.+-+|+|..++....+. .........+-+...++..|++.... . .+....+...++..+. ++ |
T Consensus 21 kn~fy~G~yq~~i~e~~~~-~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~-~~~~~~a~~~la~~~~--~~---a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF-SKVTDNTLLFYKAKTLLALGQYQSQD--------P-TSKLGKVLDLYVQFLD--TK---N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS-SCCCCHHHHHHHHHHHHHTTCCCCCC--------S-SSTTHHHHHHHHHHHT--TT---C
T ss_pred HHHHHhhHHHHHHHHHHhc-CccchHHHHHHHHHHHHHcCCCccCC--------C-CCHHHHHHHHHHHHhc--cc---H
Confidence 3456688988887744321 11111234455667777777776421 1 1222334444554442 22 8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHH
Q 043837 110 ISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP--EHSELKKAYFALKNLLKKTKSAEDNVSKGKLR 187 (409)
Q Consensus 110 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (409)
+..+++.+...+....+++.+|.++...|++++|++++.+++..+| .+.+ ++..+..++..+ |+.+
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le---a~~l~vqi~L~~---------~r~d 153 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE---LLLLAIEVALLN---------NNVS 153 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH---HHHHHHHHHHHT---------TCHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH---HHHHHHHHHHHC---------CCHH
Confidence 8999999988766777888999999999999999999999999987 6666 777778888777 9999
Q ss_pred HHHHHHHHHHccCCCC--ccchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcChh--cHHHHHHHHHHHHhccCHHHH
Q 043837 188 VAVEDFKAALALDPNH--TAHNVHLYLGLCKVLVKLG--RGKDALSSCTEALNINEE--LIEALVQRGEAKLLTEDWEGA 261 (409)
Q Consensus 188 ~A~~~~~~al~~~~~~--~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A 261 (409)
.|.+.++++.+.+|+. ......+...-+++.+..| ++.+|...|+++....|+ .+..+++ ++..+|++++|
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence 9999999999999820 0003333444455566667 999999999999988886 3334444 89999999999
Q ss_pred HHHHHHHHhh----------CCCcHHHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCC-CC
Q 043837 262 VEDLKSAAQQ----------SPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKN-VD 330 (409)
Q Consensus 262 ~~~~~~al~~----------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~-~~ 330 (409)
...++.+++. +|+++++...+..+...+++ +. ..|...++..||+.. ..
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-------------------~a-~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-------------------DT-EDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-------------------TT-HHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-------------------HH-HHHHHHHHHhCCCChHHH
Confidence 9999988877 47788877555555444432 11 233334556677752 22
Q ss_pred chHHHHHHHHHHHHHH
Q 043837 331 NREEAENKFREIAAAY 346 (409)
Q Consensus 331 ~~~~a~~~~~~i~~ay 346 (409)
...+.+..|.++...|
T Consensus 291 d~~~k~~~Fd~~~~ky 306 (310)
T 3mv2_B 291 HHQEIDAKFDELVRKY 306 (310)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3355566676666544
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.54 E-value=2.3e-14 Score=127.91 Aligned_cols=139 Identities=20% Similarity=0.268 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHccCHHHHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS-----------------KAKLLKVKLLLAAKDYASAISETGYL 116 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~a 116 (409)
.+..++..+..++..++|++|+..|.+ ++...|.+. .+++++|.|+..++++++|+.+|+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~-Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEM-AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHH-HHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566777777777788888888777 677777665 48999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Q 043837 117 LKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA 196 (409)
Q Consensus 117 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 196 (409)
++++|++..+++.+|.+|..+|++++|+.+|++++.++|++.. ++..++.+.... .+..+++...|.++
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~---a~~~L~~l~~~~--------~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA---IRRELRALAEQE--------KALYQKQKEMYKGI 325 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988 777777664322 16778889999999
Q ss_pred HccCCCCc
Q 043837 197 LALDPNHT 204 (409)
Q Consensus 197 l~~~~~~~ 204 (409)
+...|+++
T Consensus 326 l~~~p~~~ 333 (338)
T 2if4_A 326 FKGKDEGG 333 (338)
T ss_dssp --------
T ss_pred hCCCCCCC
Confidence 99998754
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.54 E-value=3.1e-13 Score=102.52 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS---KAKLLKVKLLLAAKDYASAISETGYLLKEDENN---LEALLHR 130 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 130 (409)
..+..|..++..|++++|+..|.+ ++...|.++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLS-FLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH-HHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 356788888999999999999998 888899888 899999999999999999999999999999999 8899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 043837 131 GRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALK 168 (409)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 168 (409)
|.++..+|++++|+..|++++...|++.....+...+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999999999987444444443
No 178
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.54 E-value=4.3e-14 Score=108.47 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHhcChhcHHHHHHHHHHHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRG----------KDALSSCTEALNINEELIEALVQRGEAKL 253 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 253 (409)
+.+++|+..++++++++|+ ++.+|.++|.++..++++ ++|+..|+++|+++|++..+|+++|.+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 7899999999999999999 788999999999999876 49999999999999999999999999999
Q ss_pred hcc-----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 254 LTE-----------DWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 254 ~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
.+| ++++|+.+|++|++++|++...+..+..+.+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 885 8999999999999999999888777766544
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.53 E-value=3.2e-15 Score=133.56 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccC
Q 043837 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALD 200 (409)
Q Consensus 121 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 200 (409)
+.....+..+|.+++..+++++|+..|++++.+.|++.. +. . .+++.++...+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~----~~-------~---------~~~~~~~~~~l------- 228 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM----FQ-------L---------YGKYQDMALAV------- 228 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH----HT-------C---------CHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh----hh-------h---------cccHHHHHHHH-------
Confidence 334556777777777777777777777777777766441 00 0 02222222221
Q ss_pred CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837 201 PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRE 280 (409)
Q Consensus 201 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 280 (409)
...+++++|.++..++++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++.
T Consensus 229 ------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~ 302 (338)
T 2if4_A 229 ------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302 (338)
T ss_dssp ------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 11255566666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHHHHH
Q 043837 281 ALMRAE 286 (409)
Q Consensus 281 ~l~~~~ 286 (409)
.+..+.
T Consensus 303 ~L~~l~ 308 (338)
T 2if4_A 303 ELRALA 308 (338)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555543
No 180
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=97.11 Aligned_cols=68 Identities=46% Similarity=0.788 Sum_probs=62.6
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
..++|++|+|.+.++.++|+++|+++++.+|||+... ..+++.|+.|++||++|+||.+|..||....
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 4689999999999999999999999999999999875 4678899999999999999999999998543
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.53 E-value=1.9e-14 Score=134.44 Aligned_cols=135 Identities=11% Similarity=0.239 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYY 135 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 135 (409)
..++.+|..++..|++++|+..|++ +++.+|.++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.+|.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~-Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQ-AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3345566677888999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH--HHHHHHHhhHHhcCCHHHHHHHHH-----------HHHccCCC
Q 043837 136 YLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNL--LKKTKSAEDNVSKGKLRVAVEDFK-----------AALALDPN 202 (409)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~A~~~~~-----------~al~~~~~ 202 (409)
.+|++++|+..|+++++++|++.. ++..++.+ +... +++++|+..++ +++.+.|+
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKD---AKMKYQECNKIVKQ---------KAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTT---HHHHHHHHHHHHHH---------HHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHH---------HHHHHHhccccccchhHhhhhhhhcccccc
Confidence 999999999999999999999988 77777776 4444 99999999999 88887775
Q ss_pred C
Q 043837 203 H 203 (409)
Q Consensus 203 ~ 203 (409)
.
T Consensus 154 ~ 154 (477)
T 1wao_1 154 Y 154 (477)
T ss_dssp C
T ss_pred c
Confidence 3
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.53 E-value=4e-13 Score=101.84 Aligned_cols=107 Identities=19% Similarity=0.098 Sum_probs=96.2
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc---HHHHHHHHHHHHhcc
Q 043837 180 NVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL---IEALVQRGEAKLLTE 256 (409)
Q Consensus 180 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~ 256 (409)
++..|++++|+..|+++++..|+++. ...+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.++..+|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 33449999999999999999998543 44799999999999999999999999999999999 899999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 257 DWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 257 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
++++|+..|+++++..|+++.+......+..
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 91 KNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999999999999999887776665544
No 183
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.52 E-value=2.1e-14 Score=97.20 Aligned_cols=67 Identities=54% Similarity=0.872 Sum_probs=61.1
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
.++|++|+|.+.++.++|+++|+++++.+|||+... ..++..|+.|++||++|+||.+|..||...+
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC--TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 478999999999999999999999999999999875 3577899999999999999999999998543
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=8.2e-13 Score=122.26 Aligned_cols=206 Identities=13% Similarity=-0.019 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPACS-----------------KAKLLKVKLLLAAKDYASAISETGYLLKE 119 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 119 (409)
..+..|..+...|+|++|++.|.+ ++...|... .++..+|.+|...|++++|++.+.+++..
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLS-LLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH-HHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-HHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356778888889999999999988 777666532 46889999999999999999999999987
Q ss_pred CCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHH
Q 043837 120 DENNLE------ALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAV 190 (409)
Q Consensus 120 ~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 190 (409)
.+.... +...++.++...+++++|+.++++++...+ +......++..++.++... |+|.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~ 155 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK---------KQYKDSL 155 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH---------TCHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc---------cChHHHH
Confidence 655322 456788899999999999999999987532 2222334788888888888 9999999
Q ss_pred HHHHHHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh-------cHHHHHHHHHHHHhccCHHHH
Q 043837 191 EDFKAALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE-------LIEALVQRGEAKLLTEDWEGA 261 (409)
Q Consensus 191 ~~~~~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A 261 (409)
.++.+++.... ++......++..++.+|...+++++|...+++++...+. ....+..+|.++...+++++|
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999987532 222337789999999999999999999999999876432 245677889999999999999
Q ss_pred HHHHHHHHhhC
Q 043837 262 VEDLKSAAQQS 272 (409)
Q Consensus 262 ~~~~~~al~~~ 272 (409)
..+|.++++..
T Consensus 236 ~~~~~~a~~~~ 246 (434)
T 4b4t_Q 236 FSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.52 E-value=3.3e-13 Score=102.29 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhc-
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEEL- 241 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~- 241 (409)
.+..++.++... +++++|+.++++++...|. +..++.++|.++...|++++|+.++++++...|++
T Consensus 6 ~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 6 KEKELGNDAYKK---------KDFDTALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence 666777776666 9999999999999999998 67799999999999999999999999999999887
Q ss_pred ------HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Q 043837 242 ------IEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMS 292 (409)
Q Consensus 242 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 292 (409)
+.++..+|.++...|++++|+.+|++++++.| ++.+...+..+...++..
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 588888888887766543
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=3.1e-15 Score=139.81 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKN 169 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 169 (409)
+..+..+|.++...|++++|+..|+++++++|++..++..+|.++..+|++++|+..++++++++|++.. ++..++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~ 82 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAA 82 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Confidence 4456677889999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHH--HHHcCChhHHHHHHH-----------HHHh
Q 043837 170 LLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKV--LVKLGRGKDALSSCT-----------EALN 236 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~al~ 236 (409)
++..+ |++++|+..|+++++++|+ ...++.+++.+ +...+++++|++.++ +++.
T Consensus 83 ~~~~~---------g~~~eA~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~ 149 (477)
T 1wao_1 83 SNMAL---------GKFRAALRDYETVVKVKPH----DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 149 (477)
T ss_dssp HHHHH---------TCHHHHHHHHHHHHHHSTT----CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCC
T ss_pred HHHHc---------CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcc
Confidence 99988 9999999999999999999 45577888887 889999999999999 7877
Q ss_pred cChhc
Q 043837 237 INEEL 241 (409)
Q Consensus 237 ~~p~~ 241 (409)
++|+.
T Consensus 150 ~~~~~ 154 (477)
T 1wao_1 150 IEDEY 154 (477)
T ss_dssp CCTTC
T ss_pred ccccc
Confidence 77653
No 187
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.52 E-value=1.1e-14 Score=103.08 Aligned_cols=71 Identities=41% Similarity=0.807 Sum_probs=64.3
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC-----chHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD-----NREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~-----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
...++|++|+|.+.++.++|+++|+++++.+|||++.. ....+++.|+.|++||++|+||.+|..||....
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 34689999999999999999999999999999999763 347889999999999999999999999998654
No 188
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=3.7e-12 Score=122.73 Aligned_cols=226 Identities=8% Similarity=-0.034 Sum_probs=175.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHH-HHHHHHHHhh
Q 043837 7 ALDDLNTAIEADPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPL-EYIDKVVLVF 85 (409)
Q Consensus 7 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~ 85 (409)
....|+++|...|.++..|+..+..+...|+ .++|+ .+|.+ ++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~---------------------------------~~~a~r~il~r-Ai~~ 373 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNT---------------------------------DSTVITKYLKL-GQQC 373 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC---------------------------------CTTHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc---------------------------------HHHHHHHHHHH-HHHh
Confidence 4567788888888888888777776655554 44554 66666 6677
Q ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----------CCC-----------CHHHHHHHHHHHHhcCChHHH
Q 043837 86 SPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-----------DEN-----------NLEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 86 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~l~~~~~~~~~~~~A 143 (409)
.|.+..+|+..+.+....|++++|...|++++.. .|. ...+|...+......++.+.|
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 8988888999999999999999999999999875 243 345788888888888999999
Q ss_pred HHHHHHHHcc-CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC
Q 043837 144 QRHFQKGLRL-DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG 222 (409)
Q Consensus 144 ~~~~~~al~~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~ 222 (409)
...|.+|++. .+.... +|...+.+.... .++++.|..+|+.+++..|+ ...++...+......+
T Consensus 454 R~vf~~A~~~~~~~~~~---lyi~~A~lE~~~--------~~d~e~Ar~ife~~Lk~~p~----~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 454 RKIFGKCRRLKKLVTPD---IYLENAYIEYHI--------SKDTKTACKVLELGLKYFAT----DGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHTGGGSCTH---HHHHHHHHHHTT--------TSCCHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCChH---HHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHhCC
Confidence 9999999987 333333 444444333222 14589999999999999998 5667888888888899
Q ss_pred ChhHHHHHHHHHHhcCh---hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 223 RGKDALSSCTEALNINE---ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 223 ~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
+.+.|...|++++...| ....+|......-...|+.+.+....+++.+..|+++.+...
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 99999999999999877 466788888888888999999999999999999998664433
No 189
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.51 E-value=2.8e-14 Score=95.43 Aligned_cols=66 Identities=50% Similarity=0.904 Sum_probs=60.3
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
...++|++|||.+.++..+|+++|+++++.+|||+.... ...|+.|++||++|+||.+|..||.+.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 456899999999999999999999999999999998654 468999999999999999999999854
No 190
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=97.80 Aligned_cols=68 Identities=50% Similarity=0.813 Sum_probs=62.2
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..++|++|+|.+.++..+|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||...
T Consensus 6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC-TTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 46899999999999999999999999999999998754 357889999999999999999999999854
No 191
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=4.4e-11 Score=115.30 Aligned_cols=221 Identities=10% Similarity=-0.003 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAI-SETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
.....|++ ++...|..+.+|+..+..+...++.++|. ..|++++...|.+...|..++......|+++.|...|++++
T Consensus 327 Rv~~~Ye~-aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQ-AAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35577888 88899999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred ccC-----------CCcH--------HHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHH
Q 043837 152 RLD-----------PEHS--------ELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYL 212 (409)
Q Consensus 152 ~~~-----------p~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 212 (409)
... |.+. ....+|.....+.... +..+.|...|.+|++..|.. ...+|.
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~---------~~l~~AR~vf~~A~~~~~~~---~~~lyi 473 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI---------QGLAASRKIFGKCRRLKKLV---TPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH---------HCHHHHHHHHHHHHHTGGGS---CTHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCC---ChHHHH
Confidence 752 4321 1223566666665555 88999999999999873321 345677
Q ss_pred HHHHHHHHcC-ChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHH
Q 043837 213 GLCKVLVKLG-RGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ---DMNIREALMRAEKA 288 (409)
Q Consensus 213 ~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~ 288 (409)
..+.+....+ +++.|...|+++++..|+++..+...+......|+.+.|...|++++...|+ ...++......+..
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7777766665 4899999999999999999999999999999999999999999999999884 44555555555443
Q ss_pred HhhcchhhhhhhhcccccCCHHHHHHHHHHHHhcc
Q 043837 289 LKMSKRKDWYKILGVSKTASISEIKRAYKKLALQW 323 (409)
Q Consensus 289 ~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~ 323 (409)
.+ +.+.+.+.+.++....
T Consensus 554 ~G-----------------~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 554 VG-----------------SLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TC-----------------CSHHHHHHHHHHHHHS
T ss_pred cC-----------------CHHHHHHHHHHHHHhC
Confidence 33 2556777777755554
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.49 E-value=4.5e-13 Score=120.83 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHh----------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLV----------------FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE 119 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 119 (409)
..+...|..++..++|++|+..|++ ++. .+|....++.++|.++..++++++|+.++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~k-Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTK-VLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-HHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3344555555555555555555555 443 67788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837 120 DENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174 (409)
Q Consensus 120 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 174 (409)
+|+++.+++.+|.+|..++++++|+..|+++++++|++.. ++..++.++..+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~---~~~~l~~~~~~~ 354 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA---IQAELLKVKQKI 354 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 788888887777
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.49 E-value=7.2e-14 Score=104.19 Aligned_cols=99 Identities=19% Similarity=0.126 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVE 263 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 263 (409)
|++++|+.+|++++++.++++. ...++.++|.++..+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999999532222 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHH
Q 043837 264 DLKSAAQQSPQDMNIREALM 283 (409)
Q Consensus 264 ~~~~al~~~p~~~~~~~~l~ 283 (409)
.++++++..|+++.+.....
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHhCCCcHHHHHHHH
Confidence 99999999999988654433
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.49 E-value=1.7e-13 Score=105.13 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=84.0
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDY----------ASAISETGYLLKEDENNLEALLHRGRAYYYLA 138 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 138 (409)
+.|++|+..+++ +++.+|+++.+|+++|.++..++++ ++|+..|+++|+++|++.++|+++|.+|..+|
T Consensus 16 ~~feeA~~~~~~-Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAEN-TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 457888888988 9999999999999999999999876 59999999999999999999999999999885
Q ss_pred -----------ChHHHHHHHHHHHccCCCcHH
Q 043837 139 -----------DHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 139 -----------~~~~A~~~~~~al~~~p~~~~ 159 (409)
++++|+.+|++|++++|++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 899999999999999999876
No 195
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=3.4e-14 Score=98.70 Aligned_cols=67 Identities=54% Similarity=0.891 Sum_probs=61.8
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
..++|++|+|.+.++.++|+++|+++++.+|||++.. ..+++.|+.|++||++|+||.+|..||...
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 82 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKRTNYDHYG 82 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS--TTHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 4689999999999999999999999999999999876 357889999999999999999999999854
No 196
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=1.6e-13 Score=100.95 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=98.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837 154 DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTE 233 (409)
Q Consensus 154 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 233 (409)
+|++.. .+..++.++... +++++|+..+++++++.|. ...++.++|.++...|++++|+.++++
T Consensus 2 ~p~~~~---~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 2 VDQNPE---EYYLEGVLQYDA---------GNYTESIDLFEKAIQLDPE----ESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp CCSSTT---GGGGHHHHHHSS---------CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcHH---HHHHHHHHHHHh---------hhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 566666 677777777666 9999999999999999998 677999999999999999999999999
Q ss_pred HHhcChh--cHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhhCCCcH
Q 043837 234 ALNINEE--LIEALVQRGEAKLLT-EDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 234 al~~~p~--~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~ 276 (409)
+++.+|. +..++..+|.++..+ |++++|++++++++...|.++
T Consensus 66 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999 999999999999999998753
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.47 E-value=4.9e-13 Score=120.60 Aligned_cols=137 Identities=23% Similarity=0.364 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH 203 (409)
Q Consensus 124 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 203 (409)
...+..+|.+++..+++++|+..|++++.+.+.... . .. ......+.|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~--------------~---------~~-------~~~~~~~~~~- 271 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA--------------A---------AE-------DADGAKLQPV- 271 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--------------H---------SC-------HHHHGGGHHH-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc--------------c---------cC-------hHHHHHHHHH-
Confidence 345777888888888888888888888775432110 0 11 2233344455
Q ss_pred ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 043837 204 TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALM 283 (409)
Q Consensus 204 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 283 (409)
...++.++|.++..++++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..+.
T Consensus 272 ---~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ---ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 66788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhcch
Q 043837 284 RAEKALKMSKR 294 (409)
Q Consensus 284 ~~~~~~~~~~~ 294 (409)
.+...++..+.
T Consensus 349 ~~~~~~~~~~~ 359 (370)
T 1ihg_A 349 KVKQKIKAQKD 359 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776665443
No 198
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.47 E-value=4.1e-13 Score=101.76 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCcc
Q 043837 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTA 205 (409)
Q Consensus 126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 205 (409)
.++.+|.++...|++++|+.+|++++..+|.+.. ++..++.++... +++++|+.++++++...|+++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~ 73 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---YITNQAAVYFEK---------GDYNKCRELCEKAIEVGRENRE 73 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHh---------ccHHHHHHHHHHHHhhccccch
Confidence 3444444444444444444444444444444444 444444444444 5555555555555544443111
Q ss_pred ---chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhcc
Q 043837 206 ---HNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTE 256 (409)
Q Consensus 206 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 256 (409)
....++..+|.++...|++++|+.+++++++..| ++..+..++.+...++
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 0266889999999999999999999999999988 5777887777766544
No 199
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.47 E-value=4.1e-15 Score=129.23 Aligned_cols=67 Identities=46% Similarity=0.831 Sum_probs=0.0
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
...++|++|+|.++++.++|+++|+++++++|||++.. ..++++|++|++||++|+||++|..||..
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE--NDAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC--hHHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 34799999999999999999999999999999999875 37889999999999999999999999986
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.7e-11 Score=113.36 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=144.1
Q ss_pred CChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHhHHHHHHHHHHHHH-------HH
Q 043837 2 KHYSEALDDLNTAIEADPTLS-----------------EAYFHRGSVLRQLCRVKARNSVAEKELSQLLQA-------QS 57 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~ 57 (409)
|+|++|++.|.++++..|... .++..+|.+|...|++++|...+...+...... ..
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 789999999999999988643 468899999999999999999998887643321 11
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHH
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVF------SPACSKAKLLKVKLLLAAKDYASAISETGYLLKE------DENNLE 125 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~ 125 (409)
....+..+...+++++|+.++.+ ++.. .+....++..+|.++...|+|.+|+..+++++.. .+....
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEK-SIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 12233444456899999999988 4433 2334678899999999999999999999999875 233466
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCC---CcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc
Q 043837 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDP---EHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL 199 (409)
Q Consensus 126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 199 (409)
++..++.+|..++++++|...+++++...+ .... ....+..++.++. ..++|.+|..+|.++++.
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~---------~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC---------EDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT---------SSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHH
Confidence 899999999999999999999999987643 2222 1223444444443 449999999999999874
No 201
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.45 E-value=1.4e-13 Score=102.64 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=84.2
Q ss_pred CCCchHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 68 SGEYTKPLEYIDKVVLVF---SPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
.|++++|+.+|++ ++.. +|.++.+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 3 ~g~~~~A~~~~~~-al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEK-AIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHH-HHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 5889999999999 8888 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHH
Q 043837 145 RHFQKGLRLDPEHSE 159 (409)
Q Consensus 145 ~~~~~al~~~p~~~~ 159 (409)
..+++++...|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 999999999999887
No 202
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7.8e-14 Score=101.52 Aligned_cols=69 Identities=35% Similarity=0.645 Sum_probs=62.9
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
...++|++|+|.+.++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||...
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 86 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESRARYDHWR 86 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC-STHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence 347899999999999999999999999999999998754 368889999999999999999999999853
No 203
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=2e-13 Score=98.75 Aligned_cols=69 Identities=46% Similarity=0.775 Sum_probs=63.2
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
..++|++|+|.+.++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||....
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 46899999999999999999999999999999998764 4688899999999999999999999998553
No 204
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.44 E-value=9.5e-13 Score=103.71 Aligned_cols=140 Identities=20% Similarity=0.153 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 126 ALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 126 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
++..+|.++...|++++|+.++++++.+.+. ......++..++.++... |++++|+.++++++.+.+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL---------GEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544322 111122444445444444 6666666666666655432
Q ss_pred --CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 203 --HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 203 --~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
++.....++.++|.++...|++++|+.++++++.+.+ ....++..+|.++...|++++|+.++++++++...
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 1112466788999999999999999999999987633 33677889999999999999999999999987544
No 205
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.41 E-value=2.8e-12 Score=94.22 Aligned_cols=97 Identities=23% Similarity=0.339 Sum_probs=85.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhc-
Q 043837 61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYL- 137 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~- 137 (409)
.|..++..+++++|+..+++ ++...|.+..++..+|.++...|++++|+..++++++.+|. +..++..+|.++..+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEK-AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhhHHHHHHHHHH-HHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 33444445556667777766 77889999999999999999999999999999999999999 999999999999999
Q ss_pred CChHHHHHHHHHHHccCCCcH
Q 043837 138 ADHDVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~ 158 (409)
|++++|+.++++++...|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp SCSHHHHHHHHHHGGGCCCCC
T ss_pred CCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999998753
No 206
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.40 E-value=2e-12 Score=101.84 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---cHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNL------EALLHRGRAYYYLADHDVAQRHFQKGLRLDPE---HSEL 160 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 160 (409)
..++..+|.++...|++++|+..+++++++.+... .++..+|.++...|++++|+.++++++.+.+. ....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 56788899999999999999999999998755322 47889999999999999999999999886433 2223
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN 238 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 238 (409)
..++..++.++... |++++|+.++++++.+.+. ++.....++..+|.++...|++++|+.++++++++.
T Consensus 89 ~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 89 AQSCYSLGNTYTLL---------QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 34667777777666 9999999999999986432 222356788999999999999999999999998864
Q ss_pred h
Q 043837 239 E 239 (409)
Q Consensus 239 p 239 (409)
.
T Consensus 160 ~ 160 (164)
T 3ro3_A 160 R 160 (164)
T ss_dssp T
T ss_pred H
Confidence 4
No 207
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.39 E-value=2e-13 Score=99.12 Aligned_cols=70 Identities=34% Similarity=0.584 Sum_probs=63.7
Q ss_pred chhhhhhhhcccccC-CHHHHHHHHHHHHhccCCCCCCC--chHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 293 KRKDWYKILGVSKTA-SISEIKRAYKKLALQWHPDKNVD--NREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~-~~~e~~~~y~~~a~~~~~d~~~~--~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
...++|++|||.+.+ +.++|+++|+++++.+|||+... ....++..|+.|++||++|+||.+|..||...
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~ 85 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYL 85 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 357899999999999 99999999999999999999754 45778999999999999999999999999853
No 208
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.37 E-value=3.8e-13 Score=92.24 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=57.6
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhh
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~ 355 (409)
..++|++|+|..+++.++|+++|++++++||||++......++++|++|++||++|++...|
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 36789999999999999999999999999999999887778999999999999999988665
No 209
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.4e-13 Score=92.36 Aligned_cols=63 Identities=37% Similarity=0.540 Sum_probs=56.9
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhh
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRAR 357 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~ 357 (409)
...++|++|+|.+.++.++|+++|+++++++|||++.. ..++++|++|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA--PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC--TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCcccccC
Confidence 35789999999999999999999999999999999876 3567789999999999999998753
No 210
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.33 E-value=2.7e-13 Score=97.89 Aligned_cols=63 Identities=27% Similarity=0.406 Sum_probs=57.9
Q ss_pred hhhhhhhhcccccCCH--HHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 294 RKDWYKILGVSKTASI--SEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~--~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
..++|++|||.+.++. .+|+++|+++++++|||++.. +++|++|++||++|+||.+|..|+.+
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 4689999999999998 999999999999999999765 35899999999999999999999864
No 211
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=100.13 Aligned_cols=71 Identities=42% Similarity=0.812 Sum_probs=63.2
Q ss_pred cchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCc-----hHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 292 SKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN-----REEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~-----~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
....++|++|||.+.++.++|+++|+++++.+|||+.... +..+.+.|+.|++||++|+||.+|..||...
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3457899999999999999999999999999999996543 3567899999999999999999999999743
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.32 E-value=2.5e-11 Score=89.85 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=80.2
Q ss_pred HHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837 188 VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKS 267 (409)
Q Consensus 188 ~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 267 (409)
+|+..|+++++.+|+ +..+++++|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578999999999999 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCc
Q 043837 268 AAQQSPQD 275 (409)
Q Consensus 268 al~~~p~~ 275 (409)
++++.|+.
T Consensus 79 al~~~~~~ 86 (115)
T 2kat_A 79 GLAAAQSR 86 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHhcccc
Confidence 99998854
No 213
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.29 E-value=2.5e-12 Score=86.67 Aligned_cols=62 Identities=18% Similarity=0.382 Sum_probs=55.4
Q ss_pred hhhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 294 RKDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 294 ~~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
..++|++|||.+. ++..+|+++|+++++++|||+... .++|++|++||++|+|+.+|.+++-
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~~~~ 73 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLRMNL 73 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 4679999999999 999999999999999999999754 4589999999999999999987543
No 214
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.29 E-value=5.5e-11 Score=88.00 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043837 72 TKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGL 151 (409)
Q Consensus 72 ~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 151 (409)
++|+..|.+ ++..+|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++
T Consensus 2 ~~a~~~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEA-MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHH-HHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467888888 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcH
Q 043837 152 RLDPEHS 158 (409)
Q Consensus 152 ~~~p~~~ 158 (409)
.++|...
T Consensus 81 ~~~~~~~ 87 (115)
T 2kat_A 81 AAAQSRG 87 (115)
T ss_dssp HHHHHHT
T ss_pred Hhccccc
Confidence 9887543
No 215
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.29 E-value=5.4e-13 Score=103.12 Aligned_cols=67 Identities=25% Similarity=0.415 Sum_probs=57.6
Q ss_pred cchhhhhhhhcccccCC--HHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 292 SKRKDWYKILGVSKTAS--ISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 292 ~~~~~~~~~l~~~~~~~--~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
....++|++|||.++++ .++|+++|+++++++|||++... ++|++|++||++|+||.+|..||+..+
T Consensus 8 ~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~-----e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC-----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 34578999999999998 59999999999999999997652 589999999999999999999999654
No 216
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.27 E-value=4e-12 Score=105.15 Aligned_cols=67 Identities=54% Similarity=0.843 Sum_probs=61.3
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCC
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGE 362 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~ 362 (409)
.++|++|++.++++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 68 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYG 68 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC-TTHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 4789999999999999999999999999999998654 367889999999999999999999999854
No 217
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=5.6e-12 Score=92.63 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCc------HHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEH------SELKK 162 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 162 (409)
++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..+++++.++|++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--- 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK--- 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH---
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH---
Confidence 356677888888888888888888888888888888888888888888888888888888888888877 43
Q ss_pred HHHHHHHHHHHH
Q 043837 163 AYFALKNLLKKT 174 (409)
Q Consensus 163 ~~~~l~~~~~~~ 174 (409)
++..++.++..+
T Consensus 80 ~~~~~~~~~~~~ 91 (111)
T 2l6j_A 80 LQYRLELAQGAV 91 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666655
No 218
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.25 E-value=2e-10 Score=106.69 Aligned_cols=134 Identities=6% Similarity=-0.112 Sum_probs=117.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHc-----cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc----
Q 043837 129 HRGRAYYYLADHDVAQRHFQKGLR-----LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL---- 199 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 199 (409)
..+..+..+|+|++|+..+++++. +.|+++.+...+.+++.++..+ |+|++|+.++++++.+
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~---------g~~~eA~~~~~~aL~i~~~~ 384 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL---------QAYEEASHYARRMVDGYMKL 384 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHHHH
Confidence 344557789999999999999997 4688999888999999999888 9999999999999974
Q ss_pred -CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 200 -DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 200 -~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
.|++|. .+..+.++|.+|..+|++++|+..+++|+++ +|...+....++.++..++.+++|...|.++.+
T Consensus 385 lG~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 385 YHHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SCTTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666 7889999999999999999999999999975 455567778899999999999999999999866
Q ss_pred hC
Q 043837 271 QS 272 (409)
Q Consensus 271 ~~ 272 (409)
..
T Consensus 464 ~~ 465 (490)
T 3n71_A 464 AA 465 (490)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 219
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=9.6e-12 Score=91.33 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENN------LEALL 128 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 128 (409)
...++..|..++..|++++|+..|++ ++..+|.++.++..+|.++..+|++++|+..++++++++|++ ..+++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQ-LITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667788888899999999999999 899999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 043837 129 HRGRAYYYLADHDVAQRHFQK 149 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~ 149 (409)
.+|.++..+|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999888776654
No 220
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.24 E-value=1.1e-12 Score=89.96 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCc--hHHHHHHHHHHHHHHHhcCC
Q 043837 277 NIREALMRAEKALKMSKRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDN--REEAENKFREIAAAYEVLGD 351 (409)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~--~~~a~~~~~~i~~ay~~l~d 351 (409)
+++..|..+...+... .++|++||+.+.++..+|+++||++++.+|||+++.. ...++.+|++|++||++|.+
T Consensus 17 ~ir~lL~~l~~~L~~~--~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 17 NIRALLSTMHTVLWAG--ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CHHHHHHHGGGTSCTT--CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 3555555544444322 4789999999999999999999999999999997653 24689999999999999863
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.24 E-value=7.4e-08 Score=90.08 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
.+...|++ ++...|..+.+|+..+..+...|+.++|...|++++.. |.+...+...+... +.++....+..+..
T Consensus 197 Rv~~~ye~-al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 197 RMHFIHNY-ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHH-HHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHHHHHHTC
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHHHHHHHH
Confidence 35667777 77777888888888888888888888888888888888 88766655444331 11122222222211
Q ss_pred cCC-------CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC-Ch
Q 043837 153 LDP-------EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG-RG 224 (409)
Q Consensus 153 ~~p-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~-~~ 224 (409)
... .......+|.......... +..+.|...|.++ . .|.. ...+|...|.+-...+ +.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~---------~~~~~AR~i~~~A-~-~~~~---~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKK---------RGLELFRKLFIEL-G-NEGV---GPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHH---------HCHHHHHHHHHHH-T-TSCC---CHHHHHHHHHHHHHHHCCS
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHc---------CCHHHHHHHHHHh-h-CCCC---ChHHHHHHHHHHHHHCCCh
Confidence 111 1111223455555544444 7799999999999 3 3431 4556666676666555 69
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcchhhhhhhhccc
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAEKALKMSKRKDWYKILGVS 304 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 304 (409)
+.|...|+.+++..|+.+..+...+......|+.+.|...|+++ +....++......+...+
T Consensus 337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G-------------- 398 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVG-------------- 398 (493)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS--------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC--------------
Confidence 99999999999988988888888888888999999999999987 344556655555544433
Q ss_pred ccCCHHHHHHHHHHHHhcc------CCCCCCC---chHHHHHHHHHHHHHHHhcC
Q 043837 305 KTASISEIKRAYKKLALQW------HPDKNVD---NREEAENKFREIAAAYEVLG 350 (409)
Q Consensus 305 ~~~~~~e~~~~y~~~a~~~------~~d~~~~---~~~~a~~~~~~i~~ay~~l~ 350 (409)
+.+.+++.+++..... +|...-+ ..++..-.+.+|..-|++|.
T Consensus 399 ---~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~ 450 (493)
T 2uy1_A 399 ---SMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLD 450 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTT
T ss_pred ---CHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhc
Confidence 2444555555433221 1221111 22344456777788887776
No 222
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.23 E-value=6.6e-12 Score=98.73 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=59.8
Q ss_pred hhhhhhhhcccccCC--HHHHHHHHHHHHhccCCCCCCCc----hHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 294 RKDWYKILGVSKTAS--ISEIKRAYKKLALQWHPDKNVDN----REEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~--~~e~~~~y~~~a~~~~~d~~~~~----~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
..+||.+|||.+.++ ..+|+++|+++++.+|||+.... +..+...|..|++||++|+||.+|..||.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~ 75 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLL 75 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 468999999999887 99999999999999999997643 23478899999999999999999999996
No 223
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.22 E-value=9.2e-12 Score=97.50 Aligned_cols=66 Identities=23% Similarity=0.387 Sum_probs=59.9
Q ss_pred hhhhhhcccccC--CHHHHHHHHHHHHhccCCCCCCCc----hHHHHHHHHHHHHHHHhcCChhhhhhhhcC
Q 043837 296 DWYKILGVSKTA--SISEIKRAYKKLALQWHPDKNVDN----REEAENKFREIAAAYEVLGDDDKRARYDRG 361 (409)
Q Consensus 296 ~~~~~l~~~~~~--~~~e~~~~y~~~a~~~~~d~~~~~----~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~ 361 (409)
+||.+||+.+.+ +..+|+++|+++++.+|||+++.. +..+...|..|++||++|+||.+|..||..
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 73 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS 73 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 689999999999 999999999999999999997643 345778999999999999999999999974
No 224
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.22 E-value=4.5e-12 Score=98.62 Aligned_cols=64 Identities=23% Similarity=0.444 Sum_probs=58.0
Q ss_pred hhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCch--HHHHHHHHHHHHHHHhcCChhhhhhh
Q 043837 295 KDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNR--EEAENKFREIAAAYEVLGDDDKRARY 358 (409)
Q Consensus 295 ~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~--~~a~~~~~~i~~ay~~l~d~~~~~~~ 358 (409)
.++|++|+|...++..+|+++|+++++.+|||++.... ..++++|+.|++||++|+||.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 58999999999999999999999999999999976532 34889999999999999999999865
No 225
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.21 E-value=1.8e-10 Score=81.03 Aligned_cols=83 Identities=35% Similarity=0.355 Sum_probs=72.6
Q ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 043837 88 ACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFAL 167 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l 167 (409)
.++.+++.+|.++...+++++|+..++++++.+|+++.+++.+|.++...+++++|+.++++++.++|++.. ++..+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~l 83 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH---HHHHH
Confidence 457788889999999999999999999999999999999999999999999999999999999999998887 78888
Q ss_pred HHHHHH
Q 043837 168 KNLLKK 173 (409)
Q Consensus 168 ~~~~~~ 173 (409)
+.++..
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 226
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=99.49 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=59.6
Q ss_pred hhhhhhhhccccc--CCHHHHHHHHHHHHhccCCCCCCC----chHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 294 RKDWYKILGVSKT--ASISEIKRAYKKLALQWHPDKNVD----NREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 294 ~~~~~~~l~~~~~--~~~~e~~~~y~~~a~~~~~d~~~~----~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
..++|++||+.+. ++..+|+++|+++++++|||++.. ++..+.++|+.|++||++|+||.+|..||.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4689999999986 689999999999999999999764 345677899999999999999999999985
No 227
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.18 E-value=3.5e-10 Score=79.50 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRAE 286 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 286 (409)
...++..+|.++...+++++|+.++++++..+|+++.++..+|.++...|++++|+.+++++++++|++..+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999888877765
Q ss_pred HH
Q 043837 287 KA 288 (409)
Q Consensus 287 ~~ 288 (409)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 228
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.18 E-value=4e-10 Score=104.61 Aligned_cols=134 Identities=15% Similarity=0.075 Sum_probs=115.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCcHHH
Q 043837 94 LLKVKLLLAAKDYASAISETGYLLKE-----DENNL---EALLHRGRAYYYLADHDVAQRHFQKGLR-----LDPEHSEL 160 (409)
Q Consensus 94 ~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~ 160 (409)
...+..+..+|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++. +-|+++.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677889999999999999975 34444 4688999999999999999999999997 46889998
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc-----cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043837 161 KKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA-----LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEAL 235 (409)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 235 (409)
...+.+++.++... |++++|+.+|++|++ +.|++|. ...+..+++.++..++.+++|...|.++.
T Consensus 393 a~~l~nLa~~~~~~---------G~~~eA~~~~~~Al~i~~~~lG~~Hp~-~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 393 GMAVMRAGLTNWHA---------GHIEVGHGMICKAYAILLVTHGPSHPI-TKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCTTSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888 999999999999997 4677776 77888999999999999999999998886
Q ss_pred hc
Q 043837 236 NI 237 (409)
Q Consensus 236 ~~ 237 (409)
+.
T Consensus 463 ~~ 464 (490)
T 3n71_A 463 EA 464 (490)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 229
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.15 E-value=1.1e-10 Score=84.04 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=67.9
Q ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcH
Q 043837 85 FSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHS 158 (409)
Q Consensus 85 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (409)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++.+.|...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999876543
No 230
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.15 E-value=6.5e-12 Score=89.45 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=52.0
Q ss_pred hhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCC------chHHHHHHHHHHHHHHHhcCChh
Q 043837 294 RKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVD------NREEAENKFREIAAAYEVLGDDD 353 (409)
Q Consensus 294 ~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~------~~~~a~~~~~~i~~ay~~l~d~~ 353 (409)
..+||.+|++.. ++..+|+++||++++.+|||+++. .+..++++|++|++||++|+|++
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 368999999986 999999999999999999999653 23468999999999999999986
No 231
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.14 E-value=1.5e-10 Score=83.21 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcH
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDM 276 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 276 (409)
++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|++++++.|...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 7789999999999999999999999999999999999999999999999999999999999999977543
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.12 E-value=8.4e-09 Score=86.58 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=95.2
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHh--hHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHc-----CCh
Q 043837 152 RLDPEHSELKKAYFALKNLLKKTKSAE--DNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKL-----GRG 224 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~-----~~~ 224 (409)
..+|++.+ .++..+.+....-.+. ..-..+....|...++++++++|+.. ...+|..+|.+|... |+.
T Consensus 146 ~~~~~dve---~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~--~GsA~~~LG~lY~~vPp~~gGd~ 220 (301)
T 3u64_A 146 RCTRVDVG---TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ--EGAVWNVLTKFYAAAPESFGGGM 220 (301)
T ss_dssp TCCGGGHH---HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHHHHHHHSCTTTTCCH
T ss_pred HcCccccH---HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHhCCCccCCCH
Confidence 45677777 7777776664431110 00111456789999999999999832 355999999999995 999
Q ss_pred hHHHHHHHHHHhcChhc-HHHHHHHHHHHHhc-cCHHHHHHHHHHHHhhCCCc
Q 043837 225 KDALSSCTEALNINEEL-IEALVQRGEAKLLT-EDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~ 275 (409)
++|..+|+++++++|+. ..+++..|..+... +++++|..++++++...|..
T Consensus 221 ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 221 EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999975 99999999999885 99999999999999998874
No 233
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.10 E-value=9.8e-11 Score=84.00 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 043837 59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSK-AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYL 137 (409)
Q Consensus 59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 137 (409)
+..|..++..|++++|+..|++ ++..+|.++. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEE-FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-HHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 4455566666666666666666 6666666666 66666666666666666666666666666666665533
Q ss_pred CChHHHHHHHHHHHccCCCc
Q 043837 138 ADHDVAQRHFQKGLRLDPEH 157 (409)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~ 157 (409)
+.+.+++..|++++..+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 33455555555555554443
No 234
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.09 E-value=5.6e-09 Score=91.49 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=103.9
Q ss_pred hCCCcHHH--HHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 85 FSPACSKA--KLLKVKLLLAAK---DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 85 ~~p~~~~~--~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..|.++.+ ++.+|..++..+ +..+|+.+|+++++++|+++.++-.++.+|.. ..... |....
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-----------~~~~~--~~~~~ 255 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-----------RHSQH--PLDEK 255 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HHHHS--CCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------HhccC--CCchh
Confidence 34554333 344555555443 34677777777777777777777777776661 11111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCh
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
... ....++.. ..++..+|. .+.++..++.++...|++++|+..+++++.++|
T Consensus 256 ---~~~-------------------~l~~a~~a-~~a~~~~~~----~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~ 308 (372)
T 3ly7_A 256 ---QLA-------------------ALNTEIDN-IVTLPELNN----LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308 (372)
T ss_dssp ---HHH-------------------HHHHHHHH-HHTCGGGTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred ---hHH-------------------HHHHHHHH-HHhcccCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 000 01122221 123455666 677999999999999999999999999999997
Q ss_pred hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 240 ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 240 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus 309 s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 309 S-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 4 678899999999999999999999999999998753
No 235
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=1.4e-07 Score=88.27 Aligned_cols=264 Identities=9% Similarity=0.021 Sum_probs=161.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHhHHHHHHHHHH---HHHHHHHHHHHHHHh-----CCCch
Q 043837 2 KHYSEALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-VKARNSVAEKELSQL---LQAQSTFDSALKLYD-----SGEYT 72 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~---~~~~~~~~~a~~~~~-----~~~~~ 72 (409)
++++.+..+|++++...| +.+.|..........+. .+.....+..++... ......+.....++. +++.+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 577888888999988888 77788777777666653 233344444444321 111122222222222 23344
Q ss_pred HHHHHHHHHHHhhCCC-------------------------------------------------cHHHHHHHHHHHHHc
Q 043837 73 KPLEYIDKVVLVFSPA-------------------------------------------------CSKAKLLKVKLLLAA 103 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~-------------------------------------------------~~~~~~~~a~~~~~~ 103 (409)
.+..+|++ ++...+. +...|...... ..
T Consensus 107 ~vR~iy~r-AL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~ 183 (493)
T 2uy1_A 107 KIRNGYMR-ALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EM 183 (493)
T ss_dssp HHHHHHHH-HHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HH
T ss_pred HHHHHHHH-HHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--Hh
Confidence 55555555 3332111 11122222211 11
Q ss_pred cC---------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837 104 KD---------YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174 (409)
Q Consensus 104 ~~---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 174 (409)
++ .......|++++...|..+..|+..+..+...|+.+.|...|++++.. |.+.. .+...+.... .
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~---l~~~y~~~~e-~ 258 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF---LSLYYGLVMD-E 258 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH---HHHHHHHHTT-C
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH---HHHHHHhhcc-h
Confidence 21 345678999999999999999999999999999999999999999999 98876 4443332210 0
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHccCCC------CccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHH
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALALDPN------HTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQR 248 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (409)
. +....+..+...... .......+|...+......++.+.|...|.++ ...+.....|...
T Consensus 259 ---------~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~ 325 (493)
T 2uy1_A 259 ---------E---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYC 325 (493)
T ss_dssp ---------T---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHH
T ss_pred ---------h---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHH
Confidence 0 111111111110100 00113467888888888888999999999999 4433456677777
Q ss_pred HHHHHhcc-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 043837 249 GEAKLLTE-DWEGAVEDLKSAAQQSPQDMNIREALMRAEK 287 (409)
Q Consensus 249 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 287 (409)
|.+....+ +.+.|...|+.+++..|+++..+........
T Consensus 326 A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 326 AFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 77777666 6999999999999999998877555444433
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.09 E-value=7.1e-09 Score=87.02 Aligned_cols=186 Identities=12% Similarity=0.010 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHH------hHHHHHHHHHHHHHHHHHHHHHHHHh------CCCch
Q 043837 6 EALDDLNTAIEADPTLSEAYFHRGSVLRQLCR-VKAR------NSVAEKELSQLLQAQSTFDSALKLYD------SGEYT 72 (409)
Q Consensus 6 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A------~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~ 72 (409)
-.+..++-.+..+|++...+...+..|..-.. +-+. ...+.........+...|.+|..+.. ...+.
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~ 129 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFT 129 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 35678888899999999888777777654432 1111 00111111122233334443333211 12233
Q ss_pred HHHH-----HHHHHHHhhCCCcHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 043837 73 KPLE-----YIDKVVLVFSPACSKAKLLKVKLLLA---A--K------DYASAISETGYLLKEDEN--NLEALLHRGRAY 134 (409)
Q Consensus 73 ~A~~-----~~~~~~~~~~p~~~~~~~~~a~~~~~---~--~------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 134 (409)
+++. -+...+...+|.++.+++..|.+... . + ....|...++++++++|+ +..+|..+|.+|
T Consensus 130 ~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 130 REVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp HHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 2222 23343556688999999888887653 1 2 357899999999999999 566999999999
Q ss_pred Hhc-----CChHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHHHH-HHHHhhHHhcCCHHHHHHHHHHHHccCCCC
Q 043837 135 YYL-----ADHDVAQRHFQKGLRLDPEH-SELKKAYFALKNLLKK-TKSAEDNVSKGKLRVAVEDFKAALALDPNH 203 (409)
Q Consensus 135 ~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 203 (409)
... |+.++|..+|+++++++|+. .. .++.++..+.. . +++++|..++++++...|..
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id---~~v~YA~~l~~~~---------gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPD---HHITYADALCIPL---------NNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH---HHHHHHHHTTTTT---------TCHHHHHHHHHHHHHCCGGG
T ss_pred HhCCCccCCCHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHhc---------CCHHHHHHHHHHHHcCCCCC
Confidence 995 99999999999999999975 77 77777776543 3 89999999999999998874
No 237
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.08 E-value=1.8e-10 Score=82.65 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVH-LYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAV 262 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 262 (409)
|++++|+..++++++.+|+ +.. ++.++|.++..+|++++|+..|+++++++|++..++.. +.+.+|+
T Consensus 14 ~~~~~A~~~~~~al~~~p~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~ 81 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPV----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDIL 81 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSS----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHH
Confidence 5555555555555555555 444 55555555555555555555555555555555544432 3444555
Q ss_pred HHHHHHHhhCCC
Q 043837 263 EDLKSAAQQSPQ 274 (409)
Q Consensus 263 ~~~~~al~~~p~ 274 (409)
..|++++..+|+
T Consensus 82 ~~~~~~~~~~p~ 93 (99)
T 2kc7_A 82 NFYNKDMYNQLE 93 (99)
T ss_dssp HHHCCTTHHHHC
T ss_pred HHHHHHhccCcc
Confidence 555555544444
No 238
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.05 E-value=4.1e-09 Score=79.89 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcC-h-hcHHHHHHHHHHHHhccCH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLG---RGKDALSSCTEALNIN-E-ELIEALVQRGEAKLLTEDW 258 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~ 258 (409)
.....+.+.|.+.+..++. +..+.+++|+++.+.. +.++++..++.+++.+ | ++.++++++|..++++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~----~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHccCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 3455677778888877776 7889999999999998 6779999999999998 8 6799999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 043837 259 EGAVEDLKSAAQQSPQDMNIREALMRAEKAL 289 (409)
Q Consensus 259 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 289 (409)
++|+++++++++++|++..+......+...+
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887776665544
No 239
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.05 E-value=4e-11 Score=94.49 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=58.2
Q ss_pred hcchhhhhhhh------cccc-cCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhc
Q 043837 291 MSKRKDWYKIL------GVSK-TASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDR 360 (409)
Q Consensus 291 ~~~~~~~~~~l------~~~~-~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~ 360 (409)
.....+||.+| ++.. +++..+|+++|+++++.+|||++.. +...|+.|++||++|+||.+|..||.
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~~Yd~ 79 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRSQYML 79 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 34457999999 4554 8899999999999999999999875 56689999999999999999999997
No 240
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.04 E-value=6e-09 Score=79.63 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH----HHHHhhH
Q 043837 105 DYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKK----TKSAEDN 180 (409)
Q Consensus 105 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~----~~~~~~~ 180 (409)
++++|+.+|+++.+..... +. +|.+|.....+++|+.+|+++.+. .++. +++.++.++.. .
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~---a~~~Lg~~y~~G~g~~------ 74 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGN---GCRFLGDFYENGKYVK------ 74 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHCSSSC------
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHH---HHHHHHHHHHcCCCCC------
Confidence 4555566666655554322 22 555555555555555555555544 2333 44444444433 2
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhc
Q 043837 181 VSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK----LGRGKDALSSCTEALNI 237 (409)
Q Consensus 181 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 237 (409)
+++++|+.+|+++.+. . ++.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 75 ---~d~~~A~~~~~~Aa~~--g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 75 ---KDLRKAAQYYSKACGL--N----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp ---CCHHHHHHHHHHHHHT--T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ---ccHHHHHHHHHHHHcC--C----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4455555555554443 1 23345555555555 45555555555555444
No 241
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.04 E-value=8.1e-11 Score=77.59 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=49.5
Q ss_pred hhhhhhhcccc-cCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhh
Q 043837 295 KDWYKILGVSK-TASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKR 355 (409)
Q Consensus 295 ~~~~~~l~~~~-~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~ 355 (409)
.++|++||+.+ .++.++|+++|+++++.+|||+... ..+|++|++||++|+++..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence 57899999998 7999999999999999999999533 34899999999999987654
No 242
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.99 E-value=1.6e-08 Score=88.66 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 043837 53 LQAQSTFDSALKLYDSGE---YTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLH 129 (409)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 129 (409)
..+...|-+|..++..++ ..+|+.+|++ +++.+|+.+.++..++.+|... ....|........
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~-Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGE-IVQSSPEFTYARAEKALVDIVR-------------HSQHPLDEKQLAA 259 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHH-------------HHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH-------------hccCCCchhhHHH
Confidence 346677888888877644 5899999999 9999999999999999999811 1111222221111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVH 209 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 209 (409)
...++.. ..++..+|.++. ++..++...... |++++|+..+++++.++|+ ..
T Consensus 260 ----------l~~a~~a-~~a~~~~~~~a~---~~~alal~~l~~---------gd~d~A~~~l~rAl~Ln~s-----~~ 311 (372)
T 3ly7_A 260 ----------LNTEIDN-IVTLPELNNLSI---IYQIKAVSALVK---------GKTDESYQAINTGIDLEMS-----WL 311 (372)
T ss_dssp ----------HHHHHHH-HHTCGGGTTCHH---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHHCCC-----HH
T ss_pred ----------HHHHHHH-HHhcccCCcCHH---HHHHHHHHHHhC---------CCHHHHHHHHHHHHhcCCC-----HH
Confidence 1223331 134467788887 777777766666 9999999999999999965 56
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHH
Q 043837 210 LYLGLCKVLVKLGRGKDALSSCTEALNINEELIE 243 (409)
Q Consensus 210 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 243 (409)
.+..+|.++...|++++|++.|.+|+.++|....
T Consensus 312 a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 312 NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 7889999999999999999999999999998753
No 243
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.97 E-value=9.6e-09 Score=72.11 Aligned_cols=74 Identities=11% Similarity=-0.048 Sum_probs=69.3
Q ss_pred CCCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 86 SPACSKAKLLKVKLLLAAKD---YASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 86 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+|.++.++..+|.+++..++ .++|...++++++++|+++.+++.+|.+++..|+|++|+.++++++..+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68899999999999987766 799999999999999999999999999999999999999999999999998544
No 244
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.93 E-value=3.1e-08 Score=90.49 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=92.4
Q ss_pred HHHHHHhhHHhcCCHHHHHHHHHHHHc-----cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------C
Q 043837 172 KKTKSAEDNVSKGKLRVAVEDFKAALA-----LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------N 238 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~ 238 (409)
..+......-..|+|++|+..++++++ +.|+++. ....+.++|.+|..+|+|++|+.++++++.+ +
T Consensus 300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVY-MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 333444444556899999999999998 4566665 7889999999999999999999999999976 5
Q ss_pred hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-----CCCcHHHHHHHH
Q 043837 239 EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ-----SPQDMNIREALM 283 (409)
Q Consensus 239 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~ 283 (409)
|+-...+.++|.+|..+|++++|+..|++|+++ .|+++.+.....
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 667788999999999999999999999999985 577777665443
No 245
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.93 E-value=2.2e-08 Score=76.42 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=92.4
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCChHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYY----LADHDVAQ 144 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~ 144 (409)
+++++|+..|.+ +.+..+ +.+. +|.+|.....+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~-aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVK-ACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHH-HHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHH-HHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 356788888887 444442 3333 999999999999999999999986 678999999999998 89999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHH----HHHHhhHHhcCCHHHHHHHHHHHHccCC
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKK----TKSAEDNVSKGKLRVAVEDFKAALALDP 201 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~ 201 (409)
.+|+++.+. .++. ++.+++.++.. . +++++|+.+|+++.+...
T Consensus 82 ~~~~~Aa~~--g~~~---a~~~Lg~~y~~G~g~~---------~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQD---GCLILGYKQYAGKGVV---------KNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHH---HHHHHHHHHHHTSSSC---------CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHH---HHHHHHHHHHCCCCCC---------cCHHHHHHHHHHHHHCCC
Confidence 999999886 5566 88889988876 5 899999999999998743
No 246
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.92 E-value=1.4e-08 Score=71.23 Aligned_cols=71 Identities=10% Similarity=0.095 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 207 NVHLYLGLCKVLVKLGR---GKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
++.++..+|.+++..++ .++|...++++++++|+++.+++.+|.+++..|+|++|+.+|+++++.+|.++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 67899999999987666 799999999999999999999999999999999999999999999999998544
No 247
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.86 E-value=3.1e-08 Score=75.06 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCChHHHHHHH
Q 043837 73 KPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---DYASAISETGYLLKED-E-NNLEALLHRGRAYYYLADHDVAQRHF 147 (409)
Q Consensus 73 ~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~~ 147 (409)
.+.+.|.+ .+..+|.+..+.+.+|.++.+.. +.++++..++.+++.+ | +..++++++|..++++++|++|+.++
T Consensus 16 ~~~~~y~~-e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQS-EKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHH-HHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHH-HHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44455555 56667889999999999999988 7779999999999998 7 56889999999999999999999999
Q ss_pred HHHHccCCCcHH
Q 043837 148 QKGLRLDPEHSE 159 (409)
Q Consensus 148 ~~al~~~p~~~~ 159 (409)
+++++++|++..
T Consensus 95 ~~lL~ieP~n~Q 106 (152)
T 1pc2_A 95 RGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHCTTCHH
T ss_pred HHHHhcCCCCHH
Confidence 999999999988
No 248
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.81 E-value=8.5e-08 Score=87.73 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=91.7
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHcc-----CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------Chhc
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALAL-----DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------NEEL 241 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~ 241 (409)
.....+..+|+|++|+..+++++++ .|+++. ...++.+++.+|..+|+|++|+.++++++.+ +|.-
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 3345566779999999999999975 455655 7889999999999999999999999999975 5666
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhh-----CCCcHHHHHHHHH
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ-----SPQDMNIREALMR 284 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~ 284 (409)
...+.++|.+|..+|++++|+..|++|+++ .|+++.+...+..
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 788999999999999999999999999975 5777776655433
No 249
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.78 E-value=2.1e-07 Score=85.12 Aligned_cols=114 Identities=11% Similarity=-0.055 Sum_probs=94.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-----C
Q 043837 131 GRAYYYLADHDVAQRHFQKGLRL-----DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-----D 200 (409)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~ 200 (409)
..-+..+|++++|+..+++++.+ .|+++.....+.+++.++..+ |+|++|+.++++++.+ .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~---------g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL---------GLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHhHHHHcC
Confidence 34456789999999999999974 688888888999999999888 9999999999999974 4
Q ss_pred CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----Chhc---HHHHHHHHHHHHh
Q 043837 201 PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-----NEEL---IEALVQRGEAKLL 254 (409)
Q Consensus 201 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~ 254 (409)
|++|. ....++++|.+|..+|++++|+..+++|+++ .|++ ..++.+++.+...
T Consensus 365 ~~Hp~-~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 365 GSHPV-RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp SSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred CCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 66665 7889999999999999999999999999975 3444 4455556665543
No 250
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.78 E-value=1e-07 Score=68.65 Aligned_cols=83 Identities=16% Similarity=-0.006 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-------hhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-------EELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 279 (409)
++.-++.+|..++..++|..|+.++++|++.. +..+.++..+|.++.++|+++.|+..+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45678899999999999999999999999863 34678999999999999999999999999999999998887
Q ss_pred HHHHHHHHHH
Q 043837 280 EALMRAEKAL 289 (409)
Q Consensus 280 ~~l~~~~~~~ 289 (409)
..+......+
T Consensus 84 ~n~~~~~~~~ 93 (104)
T 2v5f_A 84 GNLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 7766555443
No 251
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.76 E-value=1.1e-09 Score=108.96 Aligned_cols=70 Identities=51% Similarity=0.822 Sum_probs=40.2
Q ss_pred chhhhhhhhcccccCCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhcCCC
Q 043837 293 KRKDWYKILGVSKTASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLGDDDKRARYDRGED 363 (409)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~d~~~~~~~~~~~~ 363 (409)
...++|++||+.+.++.++|+++|+++++.+|||++... ..++++|+.|++||++|+||.+|..||+..+
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC------------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 457899999999999999999999999999999998644 4688899999999999999999999998543
No 252
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.71 E-value=3e-07 Score=83.95 Aligned_cols=102 Identities=6% Similarity=-0.027 Sum_probs=88.1
Q ss_pred HHhcCChHHHHHHHHHHHc-----cCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc-----CCCC
Q 043837 134 YYYLADHDVAQRHFQKGLR-----LDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL-----DPNH 203 (409)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~ 203 (409)
....|+|++|+..+++++. +.|+++.+...+.+++.++..+ |+|++|+.++++++.+ .|++
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~---------g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM---------QDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456889999999999997 5789999888999999999888 9999999999999974 5666
Q ss_pred ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----ChhcHHHH
Q 043837 204 TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-----NEELIEAL 245 (409)
Q Consensus 204 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 245 (409)
|. .+..+.++|.+|..+|++++|+..+++|+++ .|+++.+.
T Consensus 379 p~-~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 379 LN-VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred hH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 66 8889999999999999999999999999976 45555443
No 253
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.65 E-value=5.8e-07 Score=65.52 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhH---HHHHHHHHHhcC-h-hcHHHHHHHHHHHHhccCH
Q 043837 184 GKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKD---ALSSCTEALNIN-E-ELIEALVQRGEAKLLTEDW 258 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~ 258 (409)
.....+...|.+.+..++. +..+.+++|+++....+... ++..++..+..+ | ..-+.++.+|..++++|+|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~----s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 4445566677777766654 67899999999999888766 999999999887 6 6789999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 259 EGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 259 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
++|+.+++.+++..|++.++......+...+.
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998877766665443
No 254
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.63 E-value=4.9e-07 Score=65.02 Aligned_cols=77 Identities=26% Similarity=0.155 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKED-------ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELK 161 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (409)
++.-.+.+|..++..++|..|+..|+.+++.. +..+.++..+|.+++.+|+++.|+.++++++.++|++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~-- 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR-- 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--
Confidence 45567788999999999999999999988863 345678889999999999999999999999999999887
Q ss_pred HHHHHHH
Q 043837 162 KAYFALK 168 (409)
Q Consensus 162 ~~~~~l~ 168 (409)
+..++.
T Consensus 82 -~~~n~~ 87 (104)
T 2v5f_A 82 -ANGNLK 87 (104)
T ss_dssp -HHHHHH
T ss_pred -HHhhHH
Confidence 556655
No 255
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.31 E-value=8.1e-06 Score=59.48 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=71.4
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 76 EYIDKVVLVFSPACSKAKLLKVKLLLAAKDYAS---AISETGYLLKED-E-NNLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 76 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
..|.+ ....++.+..+.+.+|.++....+... ++..++.+++.+ | ..-+.++.+|..++++|+|++|..+++.+
T Consensus 22 ~~y~~-e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 22 KKFQS-EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHH-HHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH-HhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33434 455567889999999999999887766 999999999887 5 46678999999999999999999999999
Q ss_pred HccCCCcHH
Q 043837 151 LRLDPEHSE 159 (409)
Q Consensus 151 l~~~p~~~~ 159 (409)
|+..|++..
T Consensus 101 L~~eP~n~Q 109 (126)
T 1nzn_A 101 LQTEPQNNQ 109 (126)
T ss_dssp HHHCTTCHH
T ss_pred HHhCCCCHH
Confidence 999999988
No 256
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.26 E-value=0.0002 Score=66.95 Aligned_cols=167 Identities=10% Similarity=-0.021 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHcc--CCCcHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKED-ENNLEALLHRGRAYYYLAD---------HDVAQRHFQKGLRL--DPEHSE 159 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~al~~--~p~~~~ 159 (409)
.+...-..+.+.|+.++|++.|++..+.. +-+...|..+-.++...+. .++|.+.|++.... .|+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~- 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA- 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH-
Confidence 34555677788999999999999988753 2245666666666655443 67899999887764 45544
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 160 LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
.|..+...+... |++++|..++++..+. .|+ ...|..+-..|.+.|+.++|.+.+++..+.
T Consensus 107 ---tyn~lI~~~~~~---------g~~~~A~~l~~~M~~~g~~Pd-----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 107 ---TFTNGARLAVAK---------DDPEMAFDMVKQMKAFGIQPR-----LRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp ---HHHHHHHHHHHH---------TCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCc-----cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 577777777777 9999999999998764 454 668888899999999999999999998875
Q ss_pred --ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--CCCcHH
Q 043837 238 --NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ--SPQDMN 277 (409)
Q Consensus 238 --~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 277 (409)
.| +...|..+-.++.+.|+.++|.+.+++..+. .|+...
T Consensus 170 G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 170 EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 34 5678888999999999999999999998764 465443
No 257
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.23 E-value=0.00021 Score=66.77 Aligned_cols=154 Identities=11% Similarity=0.013 Sum_probs=83.2
Q ss_pred HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 043837 65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAK---------DYASAISETGYLLKED-ENNLEALLHRGRAY 134 (409)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 134 (409)
+.+.|+.++|+.+|+++...--+.+..+|..+-.++...+ ..++|.+.|++..... +-+..+|..+-..|
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3445666666666665322222223444444444443322 2556666666655432 11455566666666
Q ss_pred HhcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHcc--CCCCccchHHH
Q 043837 135 YYLADHDVAQRHFQKGLRL--DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALAL--DPNHTAHNVHL 210 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~ 210 (409)
...|++++|...|++.... .|+.. .|..+-..+... |+.++|...+++..+. .|+ ...
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~----tyn~lI~~~~~~---------g~~~~A~~l~~~M~~~G~~Pd-----~~t 177 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQPRLR----SYGPALFGFCRK---------GDADKAYEVDAHMVESEVVPE-----EPE 177 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHT---------TCHHHHHHHHHHHHHTTCCCC-----HHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccc----eehHHHHHHHHC---------CCHHHHHHHHHHHHhcCCCCC-----HHH
Confidence 6666666666666665543 33322 344444444444 6666666666666553 332 445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 211 YLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 211 ~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
|..+-.++.+.|+.++|...+++.-+
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666543
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.21 E-value=7.5e-05 Score=54.48 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhcCh-hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRG---KDALSSCTEALNINE-ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL 282 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 282 (409)
+..+.+++|+++.+..+. ..++..++..++.+| ..-+.++.+|..+.++|+|++|+.+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 578999999999998765 478999999999888 4688999999999999999999999999999999999988877
Q ss_pred HHHHHHHhh
Q 043837 283 MRAEKALKM 291 (409)
Q Consensus 283 ~~~~~~~~~ 291 (409)
..+...+.+
T Consensus 119 ~~Ie~ki~k 127 (134)
T 3o48_A 119 SMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777665543
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.14 E-value=4.3e-05 Score=56.51 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhcCh-hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGRG---KDALSSCTEALNINE-ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREAL 282 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 282 (409)
+..+.+++|+++....+. .+++..++..+..+| ..-+.++.+|..++++|+|++|+.+.+.+++..|++.++....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 678999999999998865 478999999999888 5678999999999999999999999999999999999988777
Q ss_pred HHHHHHHh
Q 043837 283 MRAEKALK 290 (409)
Q Consensus 283 ~~~~~~~~ 290 (409)
..+...+.
T Consensus 118 ~~Ie~~i~ 125 (144)
T 1y8m_A 118 SMVEDKIQ 125 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 260
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.03 E-value=0.00024 Score=52.95 Aligned_cols=115 Identities=10% Similarity=0.099 Sum_probs=90.5
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCH------HHHHHHHHHHHccCCCCcc----chHHHHHHHHHHHHHc
Q 043837 152 RLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKL------RVAVEDFKAALALDPNHTA----HNVHLYLGLCKVLVKL 221 (409)
Q Consensus 152 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~A~~~~~~al~~~~~~~~----~~~~~~~~la~~~~~~ 221 (409)
-+.|++.+ .|.......... |+. +.-++.|++|+..-|-... ....+|...|.. ...
T Consensus 7 ~~~p~~yd---~W~~yl~llE~~---------g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei 73 (161)
T 4h7y_A 7 MMMANNPE---DWLSLLLKLEKN---------SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI 73 (161)
T ss_dssp ---CCSHH---HHHHHHHHHHHH---------TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH
T ss_pred eeCCCCHH---HHHHHHHHHHHc---------CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh
Confidence 35677877 676666666665 776 7888999999987664321 134566666644 667
Q ss_pred CChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHH
Q 043837 222 GRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIR 279 (409)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 279 (409)
++.++|...|+.++.+....+.+|...|.....+|+...|.+.+.+++.+.|...+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9999999999999998888899999999999999999999999999999999876643
No 261
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.87 E-value=0.00028 Score=52.53 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=83.3
Q ss_pred hCCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHccCCCcHH-----HHHHHHHHHHHHHHHHHHhhHHhcCCHH
Q 043837 119 EDENNLEALLHRGRAYYYLADH------DVAQRHFQKGLRLDPEHSE-----LKKAYFALKNLLKKTKSAEDNVSKGKLR 187 (409)
Q Consensus 119 ~~p~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~p~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (409)
+.|++++.|..........|+. ++-++.|++|+..-|.... ....|...+.. ..+ ++.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei---------~D~d 77 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI---------QEPD 77 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH---------HCGG
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh---------cCHH
Confidence 4677788887777777777777 7777888888876654321 12233333322 222 8999
Q ss_pred HHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHH
Q 043837 188 VAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEA 244 (409)
Q Consensus 188 ~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (409)
+|...|+.++.+... -+.+|...|..-..+|+...|.+.+.+++.+.|...+.
T Consensus 78 ~aR~vy~~a~~~hKk----FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 78 DARDYFQMARANCKK----FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp GCHHHHHHHHHHCTT----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHHHHHHHHHhHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 999999999998544 58899999999999999999999999999999876554
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.78 E-value=0.0014 Score=48.46 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=65.6
Q ss_pred CCcHHHHHHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 87 PACSKAKLLKVKLLLAAKDY---ASAISETGYLLKEDEN-NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 87 p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
..++.+.+++|.++....+. .+++..++.++..+|. .-+.++.+|..++++|+|++|..+.+.+|+..|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 56789999999999988754 5799999999999885 5678899999999999999999999999999999988
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.77 E-value=0.00062 Score=49.68 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=63.9
Q ss_pred CcHHHHHHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 88 ACSKAKLLKVKLLLAAKDY---ASAISETGYLLKEDEN-NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
-++.+.+.+|.++....+. .+++..++.+++.+|. .-+.++.+|..++++|+|++|..+.+.+|+..|++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4678899999999987654 5799999999998884 5778999999999999999999999999999999998
No 264
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.75 E-value=4e-05 Score=48.56 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=40.4
Q ss_pred hhhhhhhccccc---CCHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 043837 295 KDWYKILGVSKT---ASISEIKRAYKKLALQWHPDKNVDNREEAENKFREIAAAYEVLG 350 (409)
Q Consensus 295 ~~~~~~l~~~~~---~~~~e~~~~y~~~a~~~~~d~~~~~~~~a~~~~~~i~~ay~~l~ 350 (409)
.+.+.+|||++. ++.++|+++|+++...+|||+.-.. -....|++|.+.|.
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~-----yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF-----YLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHHH
Confidence 456889999998 8999999999999999999985332 13445777777764
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.75 E-value=0.00026 Score=54.00 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=70.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhh---CCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------C-
Q 043837 58 TFDSALKLYDSGEYTKPLEYIDKVVLVF---SPAC------SKAKLLKVKLLLAAKDYASAISETGYLLKED------E- 121 (409)
Q Consensus 58 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p- 121 (409)
.++....++..+.|+.|+..... ++.. +|+. ..++..+|.+++..++|..|...|+++|+.. +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~l-LlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSL-LLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH-HHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45666777888888888888776 3333 3331 3478889999999999999999999987541 1
Q ss_pred ------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 122 ------------------NNLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 122 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
...++.+.++.||..++++.+|+..++.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11267899999999999999999998764
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.73 E-value=0.00028 Score=53.81 Aligned_cols=112 Identities=17% Similarity=0.085 Sum_probs=81.8
Q ss_pred HHHHHhhHHhcCCHHHHHHHHHHHHccCCCC-----ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------h--
Q 043837 173 KTKSAEDNVSKGKLRVAVEDFKAALALDPNH-----TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN------E-- 239 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p-- 239 (409)
.......+++.+.|+.|+.....++.+..++ +.....++..+|.+++..++|..|...|+++|... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556677799999999999877654322 23356788999999999999999999999987541 1
Q ss_pred -----------------hcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 043837 240 -----------------ELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIREALMRA 285 (409)
Q Consensus 240 -----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 285 (409)
.+.++.+.++.||.+++++++|+..++..-. .-..+.+...|+++
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL 164 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence 1136889999999999999999998864321 22335555555554
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.40 E-value=0.033 Score=49.72 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCChHHHhHHHH
Q 043837 23 EAYFHRGSVLRQLCRVKARNSVAE 46 (409)
Q Consensus 23 ~~~~~la~~~~~~g~~~~A~~~~~ 46 (409)
.+.+.+|.+|...|+.++-...+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~ 43 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIK 43 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466788888888888776544433
No 268
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.016 Score=57.69 Aligned_cols=70 Identities=17% Similarity=0.074 Sum_probs=49.3
Q ss_pred HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837 64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 143 (409)
.+...+.+++|+...+. +... ....+..|++++|.+..+. .++...|..+|..+...++++.|
T Consensus 638 ~l~~~~~~~~a~~~~~~---------~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A 700 (814)
T 3mkq_A 638 FLEGQEYYEEALNISPD---------QDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLA 700 (814)
T ss_dssp HHHHTTCHHHHHHHCCC---------HHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCChHHheecCCC---------cchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHH
Confidence 34455666776655532 2222 3345678899999887653 35678888999999999999999
Q ss_pred HHHHHHH
Q 043837 144 QRHFQKG 150 (409)
Q Consensus 144 ~~~~~~a 150 (409)
+.+|.++
T Consensus 701 ~~~y~~~ 707 (814)
T 3mkq_A 701 IEAFTNA 707 (814)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999886
No 269
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0095 Score=57.77 Aligned_cols=125 Identities=13% Similarity=0.100 Sum_probs=79.1
Q ss_pred ccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--hc-CChHHHHHHHHHHHc--------cCCCcHHHHHHHHHHHHH
Q 043837 103 AKD-YASAISETGYLLKEDENNLEALLHRGRAYY--YL-ADHDVAQRHFQKGLR--------LDPEHSELKKAYFALKNL 170 (409)
Q Consensus 103 ~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~-~~~~~A~~~~~~al~--------~~p~~~~~~~~~~~l~~~ 170 (409)
.++ ++.|+..+++....+|.... ++..+.+.. .. .+--+|+..+.++++ +.+.+..........+.+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 68899999999999997543 333333222 22 234467777777763 233333311122222222
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043837 171 LKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEA 234 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 234 (409)
+ ..+++-++++++++-|+.+.++++...|. ....|..|+.||..+|+|+.|+-.++.+
T Consensus 340 L--~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs----eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 L--NIQTNFLLNRGDYELALGVSNTSTELALD----SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp H--HHHHHHHHHTTCHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred H--HHHHHHHhccCcHHHHHHHHHHHHhcCch----hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2 23466666778888888888888888888 6778888888888888888887666544
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.15 E-value=0.0098 Score=49.33 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=41.2
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 100 LLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
+++.++.++|++.+...++.+|.+......+...++-.|+|+.|.+.++.+.+++|+...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 445566677777777777777777776667777777777777777777777777766554
No 271
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.06 E-value=0.062 Score=40.86 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=77.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh--h---------------CC
Q 043837 59 FDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLK--E---------------DE 121 (409)
Q Consensus 59 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~---------------~p 121 (409)
.-..+.++-.|+|..|+-++.. -+...+.+..+.||..+++|..|+.++++.++ . +|
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~ 110 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP 110 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT
T ss_pred hhhhhhhhhcchHhHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc
Confidence 4566778888999999887754 46678888899999999999999999999983 2 23
Q ss_pred CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 122 NNLE-ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 122 ~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
.+.+ .+..+|.++...|+.++|+.++......+|--..
T Consensus 111 ~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 111 GDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp TCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 3444 3568899999999999999999999988876544
No 272
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.023 Score=55.09 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
...+...+..+...++++-|+.+.++++...|.....|+.|+.+|..+++|+.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456666778888899999999999999999999999999999999999999999888776
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.95 E-value=0.031 Score=49.86 Aligned_cols=176 Identities=10% Similarity=-0.073 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH-----HHHHHHHHh-cCChHHHHHHHHHHHccCCCcHHHHHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEAL-----LHRGRAYYY-LADHDVAQRHFQKGLRLDPEHSELKKAY 164 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~ 164 (409)
.+.+.+|.+|...|++++-.+++......-+..+.+. ..+-..+.. -+..+.-++.+..+++...+... .|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r---~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR---TF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH---HH
Confidence 4556677777777777777766666544433322221 111122222 12333444444554443222111 11
Q ss_pred HHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC----
Q 043837 165 FALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN---- 238 (409)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 238 (409)
... ......+..+++.|+|.+|...+.+.++... ++.....+++..-..+|..++++.++...+.++....
T Consensus 97 lr~---~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 97 LRQ---SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence 100 0111234445555999999999998887432 3344477888899999999999999999999987542
Q ss_pred --hh-cHHHHHHHHHHHH-hccCHHHHHHHHHHHHhhC
Q 043837 239 --EE-LIEALVQRGEAKL-LTEDWEGAVEDLKSAAQQS 272 (409)
Q Consensus 239 --p~-~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~ 272 (409)
|. .+.....-|..+. ..++|..|..+|-++++-.
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 21 2455566788899 8999999999999887543
No 274
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.94 E-value=0.081 Score=40.24 Aligned_cols=189 Identities=13% Similarity=0.100 Sum_probs=118.4
Q ss_pred HHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 65 LYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
.++-.+|+.++-+-. -+-|..++....++.++.-.|+|..|+-.+.+ -+...+.+..+.||..++++..|+
T Consensus 12 s~kY~dYdt~~fLsa----~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 12 SIRYRDYETAIFLAA----CLLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HHHTTCHHHHHHHHH----HHC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhcccccHHHHHHH----HHccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHH
Confidence 344466766654432 22455567788899999999999999877653 345778888999999999999999
Q ss_pred HHHHHHHc--c---------------CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccch
Q 043837 145 RHFQKGLR--L---------------DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHN 207 (409)
Q Consensus 145 ~~~~~al~--~---------------~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 207 (409)
.+++..+. . +|.+.+. .+..++.++... |+-++|+.++.......|-.+...
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf--Fy~l~a~lltq~---------g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEF--FESLLGDLCTLS---------GYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH--HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHH--HHHHHHHHHHHh---------cCHHHhhhHhhhhcCCccccchHH
Confidence 99999993 2 2334442 456677777777 999999999999888776522100
Q ss_pred HHHHHH-------HHHHHHHcCCh-------hHHH--------HHHHHHHhcChhcHH-HHHHHHHHHHhccCHHHHHHH
Q 043837 208 VHLYLG-------LCKVLVKLGRG-------KDAL--------SSCTEALNINEELIE-ALVQRGEAKLLTEDWEGAVED 264 (409)
Q Consensus 208 ~~~~~~-------la~~~~~~~~~-------~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~ 264 (409)
..++.+ .-.+. ..|+- .... ...++-.+.-|.... .....|..|+.+|-.++...+
T Consensus 152 nliyeN~vp~~~d~~~i~-~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~l 230 (242)
T 3kae_A 152 NLLLENKVPQKRDKENVR-QTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKAC 230 (242)
T ss_dssp HHHHTTCCCCCC------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhhcCCCcccchHHHH-hhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHH
Confidence 001100 00000 00000 0000 112222223343322 234567889999999999999
Q ss_pred HHHHHhhCCC
Q 043837 265 LKSAAQQSPQ 274 (409)
Q Consensus 265 ~~~al~~~p~ 274 (409)
|...-+.+|.
T Consensus 231 f~~lR~kDP~ 240 (242)
T 3kae_A 231 FELVRRKDPM 240 (242)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHhcCCC
Confidence 9999988886
No 275
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.93 E-value=0.18 Score=50.03 Aligned_cols=97 Identities=13% Similarity=0.135 Sum_probs=60.0
Q ss_pred HhCCCchHHHH-HHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHH
Q 043837 66 YDSGEYTKPLE-YIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQ 144 (409)
Q Consensus 66 ~~~~~~~~A~~-~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 144 (409)
+..+++++|.. ++.. -| +.......+..+...+.+++|+...+ ++... -......|++++|.
T Consensus 610 ~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHH
Confidence 34567777766 4311 11 01223566677778888888876553 22222 23456788899888
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Q 043837 145 RHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAA 196 (409)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 196 (409)
+..+. .++.. .|..++...... ++++.|+.+|.++
T Consensus 673 ~~~~~-----~~~~~---~W~~la~~al~~---------~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 673 DLLTD-----ESAEM---KWRALGDASLQR---------FNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTT-----CCCHH---HHHHHHHHHHHT---------TCHHHHHHHHHHH
T ss_pred HHHHh-----hCcHh---HHHHHHHHHHHc---------CCHHHHHHHHHHc
Confidence 87543 23444 677777776666 8888888888875
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.48 Score=43.29 Aligned_cols=261 Identities=13% Similarity=0.018 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHhHHHHHHHHH---HHH-HHHHHHHHHHHHhC-CCc
Q 043837 3 HYSEALDDLNTAIEA------DPTLSEAYFHRGSVLRQLCRVKARNSVAEKELSQ---LLQ-AQSTFDSALKLYDS-GEY 71 (409)
Q Consensus 3 ~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~-~~~~~~~a~~~~~~-~~~ 71 (409)
++++|++.+...-+. -+....+...+..++...++++.....+...... ... .......+..++.. ...
T Consensus 31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~ 110 (445)
T 4b4t_P 31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSL 110 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Confidence 456777766443332 2335677788888899999998765443322110 111 11222233333321 111
Q ss_pred hH--HHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHh
Q 043837 72 TK--PLEYIDKVVLVFSPA-------CSKAKLLKVKLLLAAKDYASAISETGYLLKEDE--N----NLEALLHRGRAYYY 136 (409)
Q Consensus 72 ~~--A~~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~l~~~~~~ 136 (409)
+. -+..... +...... .......++.++...|++.+|...+..+..-.- . -.+.+.....+|..
T Consensus 111 d~~~~~~~i~~-l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 111 DLNTRISVIET-IRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp HHHHHHHHHHC-CSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 11 1111111 0001111 245567889999999999999999998864211 1 24577888999999
Q ss_pred cCChHHHHHHHHHHHc---cCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCC--CccchHHH
Q 043837 137 LADHDVAQRHFQKGLR---LDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPN--HTAHNVHL 210 (409)
Q Consensus 137 ~~~~~~A~~~~~~al~---~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~ 210 (409)
.+++.+|...++++.. ..+.++. ....+...+.++... ++|.+|..+|..++..... ++.....+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e---------~~y~~a~~~y~e~~~~~~~~~d~~~~~~~ 260 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHK---------REYLEVAQYLQEIYQTDAIKSDEAKWKPV 260 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH---------CCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 9999999999998742 2333333 223444455555555 9999999999999874321 11101112
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhc-ChhcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhhCC
Q 043837 211 YLGLCKVLVKLGRGKDALSSCTEALNI-NEELIEALVQRGEAKLL--TEDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 211 ~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p 273 (409)
+.....+..-......--....+.... .-.....+..+..++.. +.+|+...+.|...+.-+|
T Consensus 261 L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 261 LSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 222222222222111111122222211 11234566667777654 4678888888877666554
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.38 E-value=0.042 Score=45.62 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=57.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 043837 62 ALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLE 125 (409)
Q Consensus 62 a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 125 (409)
+..+++.++.++|+..+.. .++.+|.+......+...++-.|+|+.|...++.+.+++|....
T Consensus 4 ~~~ll~~g~L~~al~~~~~-~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIE-AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHH-HHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHhCCCHHHHHHHHHH-HHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 3457788999999999988 88999999999999999999999999999999999999998654
No 278
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.35 E-value=0.091 Score=47.15 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=76.5
Q ss_pred HHHhhHHhcCCHHHHHHHHHHHHccCCCCc--------c----------chHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAALALDPNHT--------A----------HNVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
..+......++.+.|+..+.+++.+..... . ....+...++.++...|++.+|+..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444556899999999999998753321 0 0123444677888899999999999999999
Q ss_pred cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 237 INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 237 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
.+|-+..++..+-.++...|+..+|+..|+++-+
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988754
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.33 Score=44.59 Aligned_cols=198 Identities=16% Similarity=0.063 Sum_probs=92.8
Q ss_pred HHHhCCCchHHHHHHHHHH----------HhhCCCcHHHHHHHHHHHHHccCHHHHH----------HHHHHHHh-----
Q 043837 64 KLYDSGEYTKPLEYIDKVV----------LVFSPACSKAKLLKVKLLLAAKDYASAI----------SETGYLLK----- 118 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~----------~~~~p~~~~~~~~~a~~~~~~~~~~~A~----------~~~~~al~----- 118 (409)
.++..+++++|..+-...+ ..+++-.+.+|+..+.++...|+..... ..+..+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3556788888887765422 1224456778888888888777765432 12222222
Q ss_pred hCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Q 043837 119 EDEN-NLEALLHRGRAYYYLADHDVAQRHFQKGLRLD--PEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKA 195 (409)
Q Consensus 119 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 195 (409)
.++. ....+..+-+.|...+.+++|.....++.-.. ..+......++.+|.+.... ++|.+|.+++..
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q---------~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQ---------LDYSTANEYIIA 295 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHH
Confidence 2332 24467788999999999999999999985322 23445556777788888777 999999999999
Q ss_pred HHccCCCCccc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChh---cHHHHHHHHHHHHhccC---HHHHHHHHH
Q 043837 196 ALALDPNHTAH---NVHLYLGLCKVLVKLGRGKDALSSCTEALNINEE---LIEALVQRGEAKLLTED---WEGAVEDLK 266 (409)
Q Consensus 196 al~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~---~~~A~~~~~ 266 (409)
|+...|.+... ...++-.+..+-+-+|+..+-. .+. .+. ....|..++.++ +.|+ +..+++-++
T Consensus 296 A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~-lf~-----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~ 368 (523)
T 4b4t_S 296 AIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELS-FFH-----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK 368 (523)
T ss_dssp HTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHH-HHT-----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH
T ss_pred HHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChH-Hhh-----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc
Confidence 99998864321 1233333444444467765421 111 121 134466666665 3454 556666666
Q ss_pred HHHhhCCCcHH
Q 043837 267 SAAQQSPQDMN 277 (409)
Q Consensus 267 ~al~~~p~~~~ 277 (409)
..+..+....-
T Consensus 369 ~~F~~Dgty~L 379 (523)
T 4b4t_S 369 QLLLKDDTYQL 379 (523)
T ss_dssp HHHHHTTCTHH
T ss_pred ceeccCChhHH
Confidence 66666655433
No 280
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.75 E-value=0.2 Score=44.87 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+...++..+...|++.+|+..+..++..+|-+..++..+-.++...|+..+|+..|+++..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445677788899999999999999999999999999999999999999999998887543
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.53 E-value=2.5 Score=43.80 Aligned_cols=189 Identities=13% Similarity=0.004 Sum_probs=112.2
Q ss_pred HHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---C--------------------
Q 043837 64 KLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE---D-------------------- 120 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~-------------------- 120 (409)
.+...+.++-+..+ ....|.++...+.+|.+++..|++++|..+|+++-.- +
T Consensus 821 ~l~~~~~~~~~~~l-----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 821 KLFLFKQYNACMQL-----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHSCTTHHHHH-----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHhhhHHHHHHH-----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 34555666555443 3446777888899999999999999999999887321 0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC-CcHHHH-HHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 121 ENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDP-EHSELK-KAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 121 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
...+..|+.+..++...+.++.+++..+.|+...+ ++.... ..|.++-.....+ ++|++|...+...-.
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l---------~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA---------GKFDAAHVALMVLST 966 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH---------CCSGGGGHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh---------CCHHHHHHHHHhCCC
Confidence 11234566778888899999999999999998654 333321 2455555555555 999999877754322
Q ss_pred cCCCCccchHHHHHHHHHHHHHcCChhH------------HHHHHHH-HHhc-Chhc-HHHHHHHHHHHHhccCHHHH-H
Q 043837 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKD------------ALSSCTE-ALNI-NEEL-IEALVQRGEAKLLTEDWEGA-V 262 (409)
Q Consensus 199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~------------A~~~~~~-al~~-~p~~-~~~~~~la~~~~~~~~~~~A-~ 262 (409)
..- ...++..+-..++..+..+. ....+.. |-.. ++.+ +..|..|=-.++..|+|..| .
T Consensus 967 ~~~-----r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 967 TPL-----KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp SSS-----CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHH-----HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 111 23455555555555544332 2222211 1111 1222 22333344445667777554 4
Q ss_pred HHHHHHHhh
Q 043837 263 EDLKSAAQQ 271 (409)
Q Consensus 263 ~~~~~al~~ 271 (409)
..|+.+.++
T Consensus 1042 vmYe~~~RL 1050 (1139)
T 4fhn_B 1042 IIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566777665
No 282
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.40 E-value=0.13 Score=47.59 Aligned_cols=79 Identities=11% Similarity=-0.072 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLL 171 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 171 (409)
.+..+|.+......+..|..+|.+|+.+.|++...++.+|.+....++.-+|+-+|-+++......+. +..++...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~---a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA---ASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH---HHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh---HHHHHHHHH
Confidence 45667888888888999999999999999999999999999999999999999999999998766766 777777666
Q ss_pred HH
Q 043837 172 KK 173 (409)
Q Consensus 172 ~~ 173 (409)
..
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.082 Score=48.16 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC-
Q 043837 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP- 201 (409)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~- 201 (409)
...++..+|..|...|+++.|.+.|.++.............+..+..+.... ++|..+..++.++..+..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~---------~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFY---------NDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhhhc
Confidence 3446777888888888888888888887765444333333555555555555 888888888887755422
Q ss_pred -CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 202 -NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 202 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
.++.....+....|.++...++|.+|...|-.++..
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 222223345555666777778888888877776653
No 284
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.35 E-value=0.93 Score=46.92 Aligned_cols=151 Identities=15% Similarity=0.021 Sum_probs=96.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCc-----H-H--------
Q 043837 95 LKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRLD-PEH-----S-E-------- 159 (409)
Q Consensus 95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~-----~-~-------- 159 (409)
.+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..- .+. . .
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34555666677665543 445667788888999999999999999999999874321 110 0 0
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCC-ccchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043837 160 -----LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNH-TAHNVHLYLGLCKVLVKLGRGKDALSSCTE 233 (409)
Q Consensus 160 -----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 233 (409)
....|..+..++... +.++.+++....|++..+.+ +.....+|.++=..++..++|++|...+..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~---------~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEE---------SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHT---------SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred cccccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 011333444444433 88999999999999876543 222344778888889999999999877754
Q ss_pred HHhcChhcHHHHHHHHHHHHhccCHH
Q 043837 234 ALNINEELIEALVQRGEAKLLTEDWE 259 (409)
Q Consensus 234 al~~~p~~~~~~~~la~~~~~~~~~~ 259 (409)
.-.. ......+..+-...++.+..+
T Consensus 964 ~pd~-~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 964 LSTT-PLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHS-SSCHHHHHHHHHHHHHHCCHH
T ss_pred CCCH-HHHHHHHHHHHHHHHhCCChh
Confidence 3211 122344444555555555443
No 285
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.24 E-value=0.13 Score=47.39 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=38.3
Q ss_pred HhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHH
Q 043837 177 AEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAK 252 (409)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 252 (409)
|..+.-...+..|..+|.+|+.+.|+ +...++.+|.+....++.-+|+-+|.+++......+.+..++...+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCC----CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 33333334455555555555555555 4445555555555555555555555555554444455555554443
No 286
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.82 Score=35.42 Aligned_cols=43 Identities=16% Similarity=-0.038 Sum_probs=28.1
Q ss_pred CCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 043837 68 SGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYL 116 (409)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 116 (409)
.|+++.|.+..+. + ++...|..+|...+..|+++-|..+|.++
T Consensus 18 lg~l~~A~e~a~~-l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKK-L-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHH-H-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH-h-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3666666666544 1 45666777777777777777777777665
No 287
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.85 Score=35.33 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKG 150 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 150 (409)
++...+.+| +..|+++.|.+..+.+ ++...|..+|......|+++-|..+|.++
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444555444 5789999999887765 56788999999999999999999999885
No 288
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=1.9 Score=39.32 Aligned_cols=104 Identities=14% Similarity=-0.028 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc---
Q 043837 125 EALLHRGRAYYYLADHDVAQRHFQKGLRL---DPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA--- 198 (409)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--- 198 (409)
.....|+.+|...|++.+|...+.....- .-+.......+.....++.. .+++..|...++++..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~---------~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL---------KGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---------HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHhhc
Confidence 34578999999999999999999887531 11122222344444444444 4999999999998743
Q ss_pred cCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 199 LDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 199 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
-.+.++.....++...|..+...++|.+|-.+|.+++..
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 233334345677888999999999999999999998764
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.89 E-value=2.7 Score=39.97 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=37.7
Q ss_pred HhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 043837 66 YDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKED 120 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 120 (409)
.+.+++..-+.++.. .|.+....+..+......|+..+|.....++....
T Consensus 83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 347788877776543 47888888888999999999888887777765443
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.23 Score=45.24 Aligned_cols=102 Identities=12% Similarity=0.046 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC----
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN---- 238 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 238 (409)
++..++..+... |++++|++.|.++......... ...++..+..++...++|..+...+.++..+.
T Consensus 133 ~~~~la~~~~~~---------Gd~~~A~~~~~~~~~~~~~~~~-kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 133 AWINLGEYYAQI---------GDKDNAEKTLGKSLSKAISTGA-KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp CCHHHHHHHHHH---------CCCTTHHHHHHHHHHHHTCCCS-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence 566777777777 9999999999999886654433 77889999999999999999999999986541
Q ss_pred -hh-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 239 -EE-LIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 239 -p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
|. ........|.++...++|..|...|-.++.....
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 11 1244556788888999999999999888776543
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.40 E-value=3.6 Score=39.17 Aligned_cols=127 Identities=10% Similarity=-0.097 Sum_probs=79.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchH
Q 043837 130 RGRAYYYLADHDVAQRHFQKGLRLDPEHSE-LKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNV 208 (409)
Q Consensus 130 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 208 (409)
++.......+.+.|...+.......+-+.. ....+..+ +..++..+...++...+.++.....+ ..
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~i---------a~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 286 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIV---------AWRLMGNDVTDEQAKWRDDAIMRSQS----TS 286 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH---------HHTSCSTTCCHHHHHHHHHHHHTCCC----HH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHH---------HHHHHHcCCChHHHHHHHhccccCCC----hH
Confidence 344444455777787777765433222222 11111111 22233335356777777776654443 22
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 209 HLYLGLCKVLVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 209 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
. ..-++...+..++++.|..++...-..........+.+|.++..+|+.++|...|+++..
T Consensus 287 ~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 L-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp H-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 223333445679999999999876554446788899999999999999999999999876
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.17 Score=46.48 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=62.8
Q ss_pred HHHhcCChHHHHHHHHHHHc---cCCC-----cHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHH----------HHHHHH
Q 043837 133 AYYYLADHDVAQRHFQKGLR---LDPE-----HSELKKAYFALKNLLKKTKSAEDNVSKGKLRV----------AVEDFK 194 (409)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~---~~p~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------A~~~~~ 194 (409)
.++..+++++|.++....+. +..- +.-..++|+.++.++... ++... -...+.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~---------~~~~~~~~~~~~~~~ir~~Ll 215 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETL---------ARSSEEINSDNQNIILRSTMM 215 (523)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHTHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHh---------cccccccccccchhhHHHHHH
Confidence 44566788888877765541 1111 111223566666655554 43332 122333
Q ss_pred HHHccCC--CCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-----hhcHHHHHHHHHHHHhccCHHHHHHHHHH
Q 043837 195 AALALDP--NHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN-----EELIEALVQRGEAKLLTEDWEGAVEDLKS 267 (409)
Q Consensus 195 ~al~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 267 (409)
.+++... .+....+.++..+-+.|+..+.+++|.....++.-.. +.....++.+|.++.-+++|.+|.+++..
T Consensus 216 ~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 216 KFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3333211 1222267788889999999999999999999985221 12256678899999999999999999999
Q ss_pred HHhhCCCc
Q 043837 268 AAQQSPQD 275 (409)
Q Consensus 268 al~~~p~~ 275 (409)
|+...|.+
T Consensus 296 A~rkap~~ 303 (523)
T 4b4t_S 296 AIRKAPHN 303 (523)
T ss_dssp HTSSCSCS
T ss_pred HHHhCCcc
Confidence 99988764
No 293
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=93.53 E-value=0.055 Score=47.77 Aligned_cols=26 Identities=8% Similarity=0.309 Sum_probs=15.9
Q ss_pred hhhhhhcccccCCHHHHHHHHHHHHhcc
Q 043837 296 DWYKILGVSKTASISEIKRAYKKLALQW 323 (409)
Q Consensus 296 ~~~~~l~~~~~~~~~e~~~~y~~~a~~~ 323 (409)
.|+..+. ...+.+++...++.+...+
T Consensus 220 ~W~~~~~--~~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 220 HWWEYVD--ATVTLELLDELTHEFLQIL 245 (358)
T ss_dssp CTTTTSC--SSCCHHHHHHHHHHHHHHT
T ss_pred chHHHHh--ccCCHHHHHHHHHHHHHHH
Confidence 3544432 2346778888888776655
No 294
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=92.67 E-value=0.046 Score=48.24 Aligned_cols=19 Identities=16% Similarity=-0.020 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 043837 332 REEAENKFREIAAAYEVLG 350 (409)
Q Consensus 332 ~~~a~~~~~~i~~ay~~l~ 350 (409)
....+...++|...|+.-.
T Consensus 231 ~~~l~~i~~~il~~y~~~~ 249 (358)
T 2pk2_A 231 LELLDELTHEFLQILEKTP 249 (358)
T ss_dssp HHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 3566666777777665544
No 295
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.64 E-value=1.9 Score=43.39 Aligned_cols=88 Identities=2% Similarity=-0.184 Sum_probs=42.9
Q ss_pred HHHhCCCchHHHHHHHHHH---HhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcC
Q 043837 64 KLYDSGEYTKPLEYIDKVV---LVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE--DENNLEALLHRGRAYYYLA 138 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~---~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~ 138 (409)
.+.+.|+.++|..++.+.. ......+...|..+...+.+.|+.++|.+.|++..+. .| +...|..+-.++.+.|
T Consensus 136 glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK~G 214 (1134)
T 3spa_A 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQD 214 (1134)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCC
Confidence 3445555555555554311 0111223455555555555555555555555555443 23 3444554444555555
Q ss_pred Ch-HHHHHHHHHHHc
Q 043837 139 DH-DVAQRHFQKGLR 152 (409)
Q Consensus 139 ~~-~~A~~~~~~al~ 152 (409)
+. ++|...+++...
T Consensus 215 ~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 215 QDAGTIERCLEQMSQ 229 (1134)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 43 445555555544
No 296
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.10 E-value=5.4 Score=34.45 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=20.6
Q ss_pred hhcHHHHHHHHH-HHHhccCHHHHHHHHHHHHh
Q 043837 239 EELIEALVQRGE-AKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 239 p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~ 270 (409)
|.....+..++. .|..+++...|...+....+
T Consensus 183 ~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555555554 46778888888876555443
No 297
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.95 E-value=2.3 Score=42.73 Aligned_cols=99 Identities=8% Similarity=-0.113 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc--CCCcHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLK-----EDENNLEALLHRGRAYYYLADHDVAQRHFQKGLRL--DPEHSELKK 162 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 162 (409)
...+..+...|.+.|+.++|...+....+ ..| +...|..+-..|.+.|+.++|.+.|++.... .|+..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv---- 201 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL---- 201 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH----
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH----
Confidence 45688888899999999999999976543 234 5778889999999999999999999998763 46544
Q ss_pred HHHHHHHHHHHHHHHhhHHhcCC-HHHHHHHHHHHHcc--CCC
Q 043837 163 AYFALKNLLKKTKSAEDNVSKGK-LRVAVEDFKAALAL--DPN 202 (409)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~--~~~ 202 (409)
.|..+-..+... |+ .++|..++++..+. .|+
T Consensus 202 TYntLI~glcK~---------G~~~e~A~~Ll~EM~~kG~~PD 235 (1134)
T 3spa_A 202 SYAAALQCMGRQ---------DQDAGTIERCLEQMSQEGLKLQ 235 (1134)
T ss_dssp HHHHHHHHHHHH---------TCCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCCCC
Confidence 466666666555 76 47888899888774 454
No 298
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.72 E-value=13 Score=32.13 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837 122 NNLEALLHRGRAYYYLADHDVAQRHFQ 148 (409)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~~~A~~~~~ 148 (409)
.+++.+..+|..|+..+++.+|..+|-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 478888999999999999998888873
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.66 E-value=18 Score=36.61 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=42.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 96 KVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 96 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+...+...+.++-| ...+..-|.++..-+.+|.++...|++++|..+|++|-.
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 45556667777654 345667788888889999999999999999999998754
No 300
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.58 E-value=32 Score=34.50 Aligned_cols=258 Identities=14% Similarity=0.067 Sum_probs=117.5
Q ss_pred CChHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCChHHHhHHHHHHHHHHH---------HH--HHHHHHHHHH
Q 043837 2 KHYSEALDDLNTAIEAD-PTL----SEAYFHRGSVLRQLCRVKARNSVAEKELSQLL---------QA--QSTFDSALKL 65 (409)
Q Consensus 2 g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---------~~--~~~~~~a~~~ 65 (409)
|+.++++..+.+.+... .++ ..+.+.+|.++...+ .++...+...+.... .. ...+..++.+
T Consensus 388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 45566666666655421 122 245555666655444 356665655554322 11 1223333333
Q ss_pred HhCCCchHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHH
Q 043837 66 YDSGEYTKPLEYIDKVVLVFSPACS--KAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVA 143 (409)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 143 (409)
...+ -++++..+.. ++..+.... .+-+.+|.++.-.++-+-....+..+.+...+...-...+|..+...|+.+.+
T Consensus 466 ~GS~-~eev~e~L~~-~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 466 MGSA-NIEVYEALKE-VLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp TTCC-CHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred cCCC-CHHHHHHHHH-HHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 3333 2456666666 333222111 34455666777777765555555555543332222234555556677777766
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC
Q 043837 144 QRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR 223 (409)
Q Consensus 144 ~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~ 223 (409)
-..++.... +++...-..+...++..+ ...|+.......+..+.. ++++ ...-..-+|......++
T Consensus 544 ~~li~~L~~-~~dp~vRygaa~alglAy---------aGTGn~~aIq~LL~~~~~-d~~d---~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 544 DDLITKMLA-SDESLLRYGGAFTIALAY---------AGTGNNSAVKRLLHVAVS-DSND---DVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHT---------TTSCCHHHHHHHHHHHHH-CSCH---HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHHh---------cCCCCHHHHHHHHHHhcc-CCcH---HHHHHHHHHHHhhccCC
Confidence 666555443 332211111122222222 333775443345555554 3321 22223333444444566
Q ss_pred hhHHHHHHHHHHhcChhcHHHHHHHHHHHH--hccC-HHHHHHHHHHHHhhCCCcHHHHHH
Q 043837 224 GKDALSSCTEALNINEELIEALVQRGEAKL--LTED-WEGAVEDLKSAAQQSPQDMNIREA 281 (409)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 281 (409)
.+.+...+..... ..++.+.+..+.++- ..|+ ..+|+..+.+... ++ +..++..
T Consensus 610 ~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~-d~~Vrq~ 666 (963)
T 4ady_A 610 YTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DP-VDFVRQA 666 (963)
T ss_dssp CSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CS-SHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CC-CHHHHHH
Confidence 5544444433322 123444433333322 2222 2677777777653 33 3444443
No 301
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.24 E-value=27 Score=29.84 Aligned_cols=27 Identities=15% Similarity=-0.135 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837 122 NNLEALLHRGRAYYYLADHDVAQRHFQ 148 (409)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~~~A~~~~~ 148 (409)
.++..+..+|..|+..+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 478899999999999999999999885
No 302
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.88 E-value=8 Score=24.76 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=26.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHHHHH
Q 043837 246 VQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRE 280 (409)
Q Consensus 246 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 280 (409)
..+|..+...|++++|..+|-+|+...|+-.++..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45777788888888888888888888877655433
No 303
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=76.75 E-value=7.9 Score=24.79 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=16.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
.+|..+...|++++|+.+|-+|+...|....
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555555555555555555444
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.68 E-value=30 Score=34.99 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=68.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-C-------------------
Q 043837 61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKE-D------------------- 120 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~------------------- 120 (409)
....+...+.++-|.+ .....|.++..-+.+|.+++..|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a~e-----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ-----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHH-----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHH-----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 3445556666654433 44567888888899999999999999999999987421 0
Q ss_pred -CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCcHH
Q 043837 121 -EN--NLEALLHRGRAYYYLADHDVAQRHFQKGLRLD-PEHSE 159 (409)
Q Consensus 121 -p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 159 (409)
+. ....|.....++...+-++-++...+.|+... +++..
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 11256688888999999999999999999754 44443
No 305
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.24 E-value=14 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
.+.....+|+..-+.|+|++|+.+|..
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455566666666666666666644
No 306
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.77 E-value=23 Score=26.10 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=58.9
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ 148 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 148 (409)
++....+.+|-+ ...+.+..-.--.++..+|+-++-.+.+...+...+-+++.++.+|.+|.+.|+..+|-+.+.
T Consensus 75 ~NlKrVi~C~~~-----~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 75 QNLKSVVECGVI-----NNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp SCTHHHHHHHHH-----TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcHHHHHHHHHH-----hcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 777777777754 112223333333456678888888888888777777789999999999999999999999999
Q ss_pred HHHcc
Q 043837 149 KGLRL 153 (409)
Q Consensus 149 ~al~~ 153 (409)
+|-+.
T Consensus 150 ~AC~k 154 (172)
T 1wy6_A 150 EACKK 154 (172)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98765
No 307
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=74.34 E-value=2.6 Score=32.54 Aligned_cols=7 Identities=14% Similarity=0.282 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 043837 338 KFREIAA 344 (409)
Q Consensus 338 ~~~~i~~ 344 (409)
..++|.+
T Consensus 118 L~~Ei~~ 124 (175)
T 3lay_A 118 VAKEMES 124 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 308
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=73.93 E-value=15 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 54 QAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
.+.....+|+..-+.|+|++|+.+|..
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKK 36 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455566666666666666666644
No 309
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=73.77 E-value=14 Score=24.38 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 53 LQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
..++.....|..+++.++|.+|+.++++
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k 78 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEK 78 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4566667777778888888888888877
No 310
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=73.65 E-value=35 Score=27.70 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDEN-NLEALLHRGRAYY 135 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 135 (409)
.-...+|.+..+.++|++.+.+.+++++.++. +.+-...++.+|-
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 34556777778888888888888888887664 3444555555553
No 311
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=72.30 E-value=70 Score=30.63 Aligned_cols=31 Identities=10% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHHHHHHH--HhccCHHHHHHHHHHHHhhCCCc
Q 043837 244 ALVQRGEAK--LLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 244 ~~~~la~~~--~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
.+..+..++ +..|+|+.|+..+++ +.+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344455554 889999999999987 6677866
No 312
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=72.21 E-value=40 Score=27.80 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKED--EN-NLEALLHRGRAY 134 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~ 134 (409)
.-+..+|.+..+.++|++.+.+.+++++.+ +. +.+-...++.+|
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 445677888888889999998888888876 43 444555555555
No 313
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=70.63 E-value=21 Score=32.41 Aligned_cols=92 Identities=12% Similarity=-0.033 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHccCCCCcc------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--------h--hc
Q 043837 184 GKLRVAVEDFKAALALDPNHTA------------HNVHLYLGLCKVLVKLGRGKDALSSCTEALNIN--------E--EL 241 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p--~~ 241 (409)
...++|...+.++....-++.. ....+..++-.+|++.++...+...++..-... | ..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 4567777777777765322110 012233466788999999998888886543321 1 23
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhh-CCCc
Q 043837 242 IEALVQRGEAKLLTEDWEGAVEDLKSAAQQ-SPQD 275 (409)
Q Consensus 242 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 275 (409)
...++.+|.++...++|.+|.+++..|+.. .|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 567788999999999999999999999998 7654
No 314
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=70.40 E-value=22 Score=24.00 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~ 79 (409)
....+|+..-..++|++|+.+|.
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~ 39 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQ 39 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 34445555555555555555553
No 315
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=70.17 E-value=45 Score=27.49 Aligned_cols=174 Identities=11% Similarity=0.030 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHh-cCChHHHHHHHHHHHcc--CCCcHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-NLEALLHRGRAYYY-LADHDVAQRHFQKGLRL--DPEHSELKKAYF 165 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 165 (409)
..-+..+|.+..+.++|++.+.+.+++++.++. +.+-...++.+|-. .|..-.+...+...... ...+.. ..
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~----~~ 106 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED----KL 106 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH----HH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHH----HH
Confidence 455677788888889999999999998887765 44455566666533 23233333333222111 111111 11
Q ss_pred HHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHH
Q 043837 166 ALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVKLGR----------GKDALSSCTEAL 235 (409)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al 235 (409)
.+..-+... .+.-+. .--.+.+..+++.|--...++...+..+-..|..|..+-+ .+.|...|+.|+
T Consensus 107 ~~i~~yr~k--Ie~EL~-~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~ 183 (261)
T 3ubw_A 107 KMIREYRQM--VETELK-LICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAAS 183 (261)
T ss_dssp HHHHHHHHH--HHHHHH-HHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHH-HHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHH
Confidence 111111100 000000 1112233333333322222222123333345555543211 256677887776
Q ss_pred h-----cChhcHH---HHHHHHHHH-HhccCHHHHHHHHHHHHh
Q 043837 236 N-----INEELIE---ALVQRGEAK-LLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 236 ~-----~~p~~~~---~~~~la~~~-~~~~~~~~A~~~~~~al~ 270 (409)
. +.|.+|. ...+.+..| .-+++.++|....++|+.
T Consensus 184 ~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 184 DIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 4555553 233444444 447999999888777754
No 316
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.70 E-value=8 Score=25.85 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHH
Q 043837 210 LYLGLCKVLVKLGRGKDALSSCT 232 (409)
Q Consensus 210 ~~~~la~~~~~~~~~~~A~~~~~ 232 (409)
.+..++..++..|+|++||++.+
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHH
Confidence 33344444455555555544443
No 317
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=68.20 E-value=23 Score=23.46 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
.....+|+..-..|+|++|+.+|..
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~ 41 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQE 41 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344555555555566555555543
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=67.21 E-value=47 Score=26.66 Aligned_cols=50 Identities=8% Similarity=-0.049 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHh--cChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 225 KDALSSCTEALN--INEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 225 ~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
+.+...|.-... +-...+..|...|..+...|++.+|.+.|+..++..-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 566677776665 45577888999999999999999999999999997644
No 319
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=66.93 E-value=60 Score=27.73 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC----CCccchHHH--HHHHHHHHH-----Hc--CC--hhHHHHHHH
Q 043837 168 KNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP----NHTAHNVHL--YLGLCKVLV-----KL--GR--GKDALSSCT 232 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~--~~~la~~~~-----~~--~~--~~~A~~~~~ 232 (409)
..+...+..+-.++..|++++|+..|+.+|..-| ++.....++ +..++.-|. ++ .. -+.....++
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lE 191 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLE 191 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3344455667777888999999999999987432 221111222 222222221 11 10 011112222
Q ss_pred HH-----HhcChhcHHHHHHHHH-HHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 233 EA-----LNINEELIEALVQRGE-AKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 233 ~a-----l~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
-+ .++.|.+...-.+.|. ..++.++|..|....++.+++.|....
T Consensus 192 LAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 192 LAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp HHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 21 1334544444344443 567889999999999999999997443
No 320
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=64.69 E-value=13 Score=25.17 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=21.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCcHH
Q 043837 246 VQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMN 277 (409)
Q Consensus 246 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 277 (409)
..+|..+...|+++.|+.+|-+|+...|+-.+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34667777777777777777777777766444
No 321
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=63.01 E-value=19 Score=28.58 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKEDEN 122 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 122 (409)
...+.+|.+++..++|.+|.+.+..|+...|.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 34455555555555555555555555555544
No 322
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=62.38 E-value=15 Score=24.54 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLL 117 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al 117 (409)
+..+-.+|..++..|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455667777778888888877776654
No 323
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.25 E-value=77 Score=27.02 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=22.0
Q ss_pred ChhcHHHHHHHHH-HHHhccCHHHHHHHHHHHHh
Q 043837 238 NEELIEALVQRGE-AKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 238 ~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~ 270 (409)
.|.....+..++. .|..+++...|...+....+
T Consensus 183 ~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3455555555554 46778888888888776654
No 324
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=59.70 E-value=13 Score=25.22 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 129 HRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
.+|..+...|+++.|+.+|-+|+...|....
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4555555666666666666666655554443
No 325
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.60 E-value=39 Score=23.14 Aligned_cols=74 Identities=12% Similarity=-0.046 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ 148 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 148 (409)
...++|..+.+ .+...+...-+-..+...++..|+|++|....+..- .++.--.++.+-.+.|-.+++...+.
T Consensus 20 H~HqEA~tIAd--wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAE--WLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHH--HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHH
Confidence 34455554443 344455555556667778888888888876655432 44555567777888888887777773
Q ss_pred H
Q 043837 149 K 149 (409)
Q Consensus 149 ~ 149 (409)
+
T Consensus 93 ~ 93 (115)
T 2uwj_G 93 G 93 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 326
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=59.35 E-value=72 Score=26.07 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 043837 92 AKLLKVKLLLAAKDYASAISETGYLLKEDEN-NLEALLHRGRAYY 135 (409)
Q Consensus 92 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 135 (409)
-+..+|.+..+.++|++.+.+.++++..++. +.+-...++.+|-
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYK 50 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYK 50 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 4566778888888898888888888887765 3444555555553
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.35 E-value=55 Score=24.72 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=11.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHH
Q 043837 59 FDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 59 ~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
+..++.++..|+|-+|-+.++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe 57 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFED 57 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHH
Confidence 4445555555555555555554
No 328
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=59.01 E-value=55 Score=24.59 Aligned_cols=90 Identities=6% Similarity=-0.014 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHH-HHHHHHHHHhhCCCCHHHHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYAS-AISETGYLLKEDENNLEALLHRGRAY 134 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~ 134 (409)
...+..|...|-..+|...+..++.. ....-.....+.+|..|.......+ ..+.....+.+..+ -.+.+=++|
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~--~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~yL~YWIy 83 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDY--APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQYMLYWIY 83 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTS--CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcC--ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HHHHHHHHH
Confidence 34466777888889999999988762 2222346788999999998877653 23333333333222 234445677
Q ss_pred HhcCChHHHHHHHHHH
Q 043837 135 YYLADHDVAQRHFQKG 150 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~a 150 (409)
.-.|++++|+..-+..
T Consensus 84 iGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 84 IGRSQSEEALELARTI 99 (161)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHhc
Confidence 7789999999877663
No 329
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.61 E-value=41 Score=23.07 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=45.4
Q ss_pred CCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043837 69 GEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADHDVAQRHFQ 148 (409)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 148 (409)
...++|..+.+ .+...+...-+-..+...++..|+|++|....+..- .++.--.++.+-.+.|-.+++...+.
T Consensus 21 H~HqEA~tIAd--wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAE--WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHH--HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHH
Confidence 33445544443 344445544555666777788888888877665533 34445566777777777777776663
Q ss_pred H
Q 043837 149 K 149 (409)
Q Consensus 149 ~ 149 (409)
+
T Consensus 94 ~ 94 (116)
T 2p58_C 94 R 94 (116)
T ss_dssp H
T ss_pred H
Confidence 3
No 330
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=58.36 E-value=2.1 Score=40.13 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=10.4
Q ss_pred cCHHHHHHHHHHHHhhCC
Q 043837 256 EDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 256 ~~~~~A~~~~~~al~~~p 273 (409)
|+..-+++.|.+|++.-|
T Consensus 424 g~eq~~i~~~a~ALe~ip 441 (543)
T 3ruv_A 424 GREQLAVRAFADALEVIP 441 (543)
T ss_dssp TTHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455556666666665543
No 331
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=58.02 E-value=20 Score=28.44 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=13.1
Q ss_pred HhhHHhcCCHHHHHHHHHHHHccCCC
Q 043837 177 AEDNVSKGKLRVAVEDFKAALALDPN 202 (409)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~al~~~~~ 202 (409)
|..++.+++|.+|.+.+..|+...|.
T Consensus 21 Gr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 21 GRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 34444445555555555555555444
No 332
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=56.89 E-value=58 Score=24.60 Aligned_cols=61 Identities=13% Similarity=0.026 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcChhc------HHHHHH---HHHHHHhccCHHHHHHHHHHHHhh
Q 043837 211 YLGLCKVLVKLGRGKDALSSCTEALNINEEL------IEALVQ---RGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 211 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~---la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
-+..+..++..|+|=+|-+.++.+....+.. ...+.. .|..+...|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455667777799999999999888765432 222233 334556779999999999999873
No 333
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=56.84 E-value=45 Score=22.91 Aligned_cols=75 Identities=13% Similarity=-0.019 Sum_probs=48.1
Q ss_pred CChHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Q 043837 36 CRVKARNSVAEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGY 115 (409)
Q Consensus 36 g~~~~A~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 115 (409)
-..++|..++.-.-......-....+...+.++|+|++|..+.+. .+ .+++--.+|.|-.+.|-.+++...+.+
T Consensus 21 H~HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~-----~c-~pdlepw~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNK-----LA-YPDLEPWLALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTT-----SC-CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCC-----CC-CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344555444333222222333445567788999999999988865 22 556666778888899998888777644
Q ss_pred H
Q 043837 116 L 116 (409)
Q Consensus 116 a 116 (409)
.
T Consensus 95 l 95 (116)
T 2p58_C 95 L 95 (116)
T ss_dssp H
T ss_pred H
Confidence 3
No 334
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.87 E-value=91 Score=28.25 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=46.5
Q ss_pred hhHHhcCCHHHHHHHHHHHHccCC--CC----ccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-Chhc
Q 043837 178 EDNVSKGKLRVAVEDFKAALALDP--NH----TAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI-NEEL 241 (409)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~al~~~~--~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 241 (409)
..+++.++...+...++..-...+ .. ....+..++.+|..+...++|.+|.+++..|+.. .|..
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345555888888877765433221 11 1125678899999999999999999999999998 6644
No 335
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.86 E-value=46 Score=22.80 Aligned_cols=56 Identities=13% Similarity=0.006 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 043837 56 QSTFDSALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLL 117 (409)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 117 (409)
-....+...+.++|+|++|..+.+. .+ .+++--.+|.|-.+.|-.+++...+.+.-
T Consensus 40 ~v~lIR~sSLmNrG~Yq~Al~l~~~-----~c-~pdlepw~ALce~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 40 AARLIRISSLANQGRYQEALAFAHG-----NP-WPALEPWFALCEWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHGGGTT-----CC-CGGGHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchhHHHHHHhcCC-----CC-CchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3345567788999999999987755 22 56666677888899999888887774443
No 336
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=55.42 E-value=87 Score=25.81 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CC-CHHHHHHHHHHHH
Q 043837 91 KAKLLKVKLLLAAKDYASAISETGYLLKED---EN-NLEALLHRGRAYY 135 (409)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~l~~~~~ 135 (409)
.-...+|.+..+.++|++.+.+.+++++.+ +. +.+-...++.+|-
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyK 77 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYK 77 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 444567777778888888888888888765 33 4444555555553
No 337
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.27 E-value=46 Score=21.99 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=6.8
Q ss_pred hccCHHHHHHHHHHHH
Q 043837 254 LTEDWEGAVEDLKSAA 269 (409)
Q Consensus 254 ~~~~~~~A~~~~~~al 269 (409)
..|++++|+.+|..++
T Consensus 28 ~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 28 SESRYPQALVCYQEGI 43 (86)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3344444444444443
No 338
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=53.16 E-value=1.9e+02 Score=29.08 Aligned_cols=85 Identities=12% Similarity=-0.048 Sum_probs=37.4
Q ss_pred HHHhCCCchHHHHHHHHHHHhhC-CCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CH----HHHH
Q 043837 64 KLYDSGEYTKPLEYIDKVVLVFS-PAC----SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN------NL----EALL 128 (409)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~-p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~----~~~~ 128 (409)
-.+..++.++++..+.+ .+... ..+ ..+.+.+|.++...+ .+++..+...+..+.. .. .+..
T Consensus 383 GlIh~g~~~~gl~~L~~-yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAP-YLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHTSSCTTTHHHHHTT-TSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHH-hccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 34445666666666655 22210 111 233344444443333 3456666655543320 01 1334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHc
Q 043837 129 HRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 129 ~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
.+|.++.-.++ +++...+...+.
T Consensus 460 GLGla~~GS~~-eev~e~L~~~L~ 482 (963)
T 4ady_A 460 GIGLAAMGSAN-IEVYEALKEVLY 482 (963)
T ss_dssp HHHHHSTTCCC-HHHHHHHHHHHH
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHh
Confidence 55555554443 345555555554
No 339
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=52.24 E-value=47 Score=21.78 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
....+|+..-..|+|++|+.+|..
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~ 38 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYN 38 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444455555555555555543
No 340
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=51.94 E-value=24 Score=23.22 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=12.5
Q ss_pred HHHHhccCHHHHHHHHHHHHh
Q 043837 250 EAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~al~ 270 (409)
.-.-..|++++|+.+|..+++
T Consensus 27 ve~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 27 VKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334455666666666666654
No 341
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=49.98 E-value=35 Score=32.80 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCh
Q 043837 89 CSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADH 140 (409)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 140 (409)
-.......|...+..|+|.-|.+.+..++..+|++..+...++.+|.++|.-
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 3556677788888888888888888888888888888888888888887743
No 342
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.73 E-value=69 Score=22.65 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=10.0
Q ss_pred HHHHHHHHhCCCchHHHHHHH
Q 043837 59 FDSALKLYDSGEYTKPLEYID 79 (409)
Q Consensus 59 ~~~a~~~~~~~~~~~A~~~~~ 79 (409)
..+|+..-..++|++|+.+|.
T Consensus 22 v~~Ave~D~ag~y~eAl~lY~ 42 (117)
T 2cpt_A 22 ASKAAQEDKAGNYEEALQLYQ 42 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHH
Confidence 344444444455555555543
No 343
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=47.64 E-value=30 Score=22.69 Aligned_cols=19 Identities=21% Similarity=0.062 Sum_probs=12.1
Q ss_pred HHhccCHHHHHHHHHHHHh
Q 043837 252 KLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 252 ~~~~~~~~~A~~~~~~al~ 270 (409)
.-..|++++|+.+|..+++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3455677777776666655
No 344
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=47.31 E-value=18 Score=23.52 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=20.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
...+|+-|..+|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 455777788888888888888877753
No 345
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.47 E-value=28 Score=24.56 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHhcCh
Q 043837 224 GKDALSSCTEALNINE 239 (409)
Q Consensus 224 ~~~A~~~~~~al~~~p 239 (409)
+++|..+..++|+++.
T Consensus 19 h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4566667777666644
No 346
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=45.38 E-value=19 Score=23.34 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=12.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 213 GLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 213 ~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
.+|+-|...|+|+.|+.+|+.+++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 347
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=44.16 E-value=4.8 Score=37.65 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 043837 261 AVEDLKSAAQ 270 (409)
Q Consensus 261 A~~~~~~al~ 270 (409)
+++.|.+|++
T Consensus 438 ~i~~~a~ALe 447 (547)
T 1kp8_A 438 GIKVALRAME 447 (547)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 348
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.62 E-value=43 Score=32.15 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH
Q 043837 123 NLEALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSA 177 (409)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 177 (409)
-.+.....|...+..|+|.-|.+..+.++..+|++.. +...++.++.++...
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~---a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRA---ARELQADALEQLGYQ 499 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHh
Confidence 3566777888888999999999999999999999998 777788887776543
No 349
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.98 E-value=1.6e+02 Score=25.16 Aligned_cols=107 Identities=14% Similarity=0.246 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCC----CCccchHHH--HHHHHHHHH-----Hc--CCh-----hHHHHH
Q 043837 169 NLLKKTKSAEDNVSKGKLRVAVEDFKAALALDP----NHTAHNVHL--YLGLCKVLV-----KL--GRG-----KDALSS 230 (409)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~--~~~la~~~~-----~~--~~~-----~~A~~~ 230 (409)
.+...+..+-.++..|++++|+..|+.+|..-| ++.....++ +..++.-|. ++ .+. ++....
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~ 180 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRI 180 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHH
Confidence 333455667777888999999999999987543 221111122 222222221 11 111 222222
Q ss_pred HHHHH-----hcChhcHHHHHHHHH-HHHhccCHHHHHHHHHHHHhhCCCc
Q 043837 231 CTEAL-----NINEELIEALVQRGE-AKLLTEDWEGAVEDLKSAAQQSPQD 275 (409)
Q Consensus 231 ~~~al-----~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~ 275 (409)
++-+. ++.|.+...-...|. ..++.++|..|...-++.+++.|+.
T Consensus 181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 231 (320)
T 3mkr_B 181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP 231 (320)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 22221 335555444444444 5678899999999999999998863
No 350
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=42.68 E-value=1.7e+02 Score=25.49 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=38.8
Q ss_pred HHHHHHHHHhc-----ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCCcHHHHHHHH
Q 043837 227 ALSSCTEALNI-----NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ------SPQDMNIREALM 283 (409)
Q Consensus 227 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~ 283 (409)
++..|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-.. ..+|.+++..+-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~ 343 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFH 343 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 56666666654 2345667788888999999999999998877653 234555554443
No 351
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.64 E-value=67 Score=25.76 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=51.3
Q ss_pred HHHHHHHHccCC------CcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc--cCCCCccchHHHHHHHH
Q 043837 144 QRHFQKGLRLDP------EHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA--LDPNHTAHNVHLYLGLC 215 (409)
Q Consensus 144 ~~~~~~al~~~p------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~la 215 (409)
...+++|+.... +++...++|..++.. .+++..+|.-... +... .+..|...|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---------------~~~p~~if~~L~~~~IG~~----~AlfYe~wA 157 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---------------IDEPVELFSFLAHHHIGQE----SSIFYEEYA 157 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---------------CSCHHHHHHHHHHTTCSTT----BHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---------------cCCHHHHHHHHHHCCcchh----HHHHHHHHH
Confidence 456666665433 344444455555432 1244455555444 4445 678999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCh
Q 043837 216 KVLVKLGRGKDALSSCTEALNINE 239 (409)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al~~~p 239 (409)
..+...|++.+|...|+..++..-
T Consensus 158 ~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 158 NYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998653
No 352
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=39.44 E-value=0.088 Score=47.78 Aligned_cols=167 Identities=14% Similarity=0.076 Sum_probs=82.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCh
Q 043837 61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADH 140 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 140 (409)
.+..++..|.|+.|.-+|.. ..-|..+|.|+..+++|..|++..++| +++.+|-....++...+++
T Consensus 150 VGDrcf~e~lYeAAKilys~---------isN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNN---------VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGG---------SCCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHHccCHHHHHHHHHh---------CccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHH
Confidence 34455556666666655543 111335566666666666666655544 2334455555555555555
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHccCCCCccchHHHHHHHHHHHHH
Q 043837 141 DVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALALDPNHTAHNVHLYLGLCKVLVK 220 (409)
Q Consensus 141 ~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~la~~~~~ 220 (409)
.-|..+--..+-. |+.-. .+...| -..|.+++-+..++.++.+... ....+..||.+|.+
T Consensus 216 rLAqicGLniIvh-adeL~------elv~~Y---------E~~G~f~ELIsLlEaglglErA----HmGmFTELaILYsK 275 (624)
T 3lvg_A 216 RLAQMCGLHIVVH-ADELE------ELINYY---------QDRGYFEELITMLEAALGLERA----HMGMFTELAILYSK 275 (624)
T ss_dssp TTTTHHHHHHHCC-SSCCS------GGGSSS---------STTCCCTTSTTTHHHHTTSTTC----CHHHHHHHHHHHHS
T ss_pred HHHHHhcchhccc-HHHHH------HHHHHH---------HhCCCHHHHHHHHHHHhCCCch----hHHHHHHHHHHHHh
Confidence 5554443333221 11111 011111 1226677777777777766655 45566667766654
Q ss_pred cCChhHHHHHHHHHHh-c-Ch------hcHHHHHHHHHHHHhccCHHHHH
Q 043837 221 LGRGKDALSSCTEALN-I-NE------ELIEALVQRGEAKLLTEDWEGAV 262 (409)
Q Consensus 221 ~~~~~~A~~~~~~al~-~-~p------~~~~~~~~la~~~~~~~~~~~A~ 262 (409)
- +.++-.++++.-.. + -| +....|..+..+|.+-.+|+.|.
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 3 33444444432111 0 01 12334555666666666666554
No 353
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=37.46 E-value=2.2e+02 Score=25.34 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=39.7
Q ss_pred HHHHHHHHHhc-----ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCCcHHHHHHHHH
Q 043837 227 ALSSCTEALNI-----NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ------SPQDMNIREALMR 284 (409)
Q Consensus 227 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~ 284 (409)
++..|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-.. ..+|.+++..+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e 366 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE 366 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 55566666543 2345667788899999999999999999877653 2445666554433
No 354
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=36.86 E-value=94 Score=20.81 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=6.5
Q ss_pred HHHHHHHHhhCCCc
Q 043837 262 VEDLKSAAQQSPQD 275 (409)
Q Consensus 262 ~~~~~~al~~~p~~ 275 (409)
++.|..++...|+.
T Consensus 42 ie~l~~alk~e~~~ 55 (93)
T 1wfd_A 42 IDMLLQVLKGTKES 55 (93)
T ss_dssp HHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHCCCH
Confidence 33444445545443
No 355
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=36.58 E-value=80 Score=28.58 Aligned_cols=31 Identities=6% Similarity=0.060 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
...++..+|.+|+..++|++|+..+++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 5568889999999999999999999999853
No 356
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=36.43 E-value=1.3e+02 Score=22.25 Aligned_cols=54 Identities=26% Similarity=0.129 Sum_probs=33.0
Q ss_pred HHHcCChhHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 043837 218 LVKLGRGKDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ 271 (409)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 271 (409)
+...|+-++--+.+...+...+-+++.++.+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345555555555555544545555677777777777777777777777766654
No 357
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=36.00 E-value=48 Score=30.04 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 107 ASAISETGYLLKEDEN--------NLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 107 ~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+..+..++.|+..-|. ...++..++++|...++|++|+...++++.
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4455556666555443 244788999999999999999999999875
No 358
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.23 E-value=9.7 Score=31.74 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 043837 276 MNIREALMRAEKALKMSK 293 (409)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~ 293 (409)
..+...|..+...++...
T Consensus 85 T~l~~gL~~A~~aLk~~~ 102 (268)
T 4b4t_W 85 LHMATALQIAQLTLKHRQ 102 (268)
T ss_dssp CCHHHHHHHHHHHHHTCS
T ss_pred CChHHHHHHHHHHHHhcc
Confidence 445566666666665443
No 359
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=34.98 E-value=97 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
...++..+|.+|+..++|++|+..+++++..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 5567888999999999999999999999864
No 360
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=34.28 E-value=6 Score=26.37 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHccC
Q 043837 140 HDVAQRHFQKGLRLD 154 (409)
Q Consensus 140 ~~~A~~~~~~al~~~ 154 (409)
+++|..++.++|..|
T Consensus 13 h~~AF~~Is~aL~~D 27 (89)
T 3eab_A 13 HKQAFEYISIALRID 27 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 455566666665544
No 361
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=34.00 E-value=89 Score=28.68 Aligned_cols=31 Identities=13% Similarity=-0.035 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
...++..+|.+|+..++|++|+..+++++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5568889999999999999999999999864
No 362
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=33.90 E-value=87 Score=28.40 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
...++..+|.+|+..++|++|+..+++++..
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5668889999999999999999999999863
No 363
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=33.61 E-value=1.9e+02 Score=23.39 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 043837 90 SKAKLLKVKLLLAAKDYASAISETGYLLKEDEN-NLEALLHRGRAYY 135 (409)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 135 (409)
..-+..+|.+..+.++|++.+.+.+++++.++. +.+-...++.+|-
T Consensus 8 re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYK 54 (236)
T 3iqu_A 8 RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYK 54 (236)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 345667788888889999999999888888765 3445556666553
No 364
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=33.16 E-value=2e+02 Score=23.61 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Q 043837 57 STFDSALKLYDSGEYTKPLEYIDKVVLVFSPA-CSKAKLLKVKLLLA-AKDYASAISETGYLLKE--DENNLEALLHRGR 132 (409)
Q Consensus 57 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~p~-~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 132 (409)
.....|...-..++|++.+.+..+ +...++. +.+-+..+..+|-. .|....+...+....+. ...+.. ...+..
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~-v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~-~~~~i~ 110 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKK-VAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED-KLKMIR 110 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-HHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH-HHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHH-HHHHHH
Confidence 344556666667888888888887 5555543 45566666666642 34444455544443322 112211 122222
Q ss_pred HHHh-----cCC-hHHHHHHHHHHHccCCCcHHHH-HHHHHHHHHHHHHHHHhhHH-hcCCHHHHHHHHHHHHc-----c
Q 043837 133 AYYY-----LAD-HDVAQRHFQKGLRLDPEHSELK-KAYFALKNLLKKTKSAEDNV-SKGKLRVAVEDFKAALA-----L 199 (409)
Q Consensus 133 ~~~~-----~~~-~~~A~~~~~~al~~~p~~~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~-----~ 199 (409)
-|.. +.. -.+.+..+.+.|--...+.+.. -.+...|..+..+.....-- +..-.+.|...|++|.+ +
T Consensus 111 ~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L 190 (261)
T 3ubw_A 111 EYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTEL 190 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2211 110 1122333333322222233222 22334566665553221110 11223556677777654 6
Q ss_pred CCCCccchHHHHHHHHHHHHH-cCChhHHHHHHHHHHh
Q 043837 200 DPNHTAHNVHLYLGLCKVLVK-LGRGKDALSSCTEALN 236 (409)
Q Consensus 200 ~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~ 236 (409)
.|.+|. ...+..|.+..|+. +++.++|....++++.
T Consensus 191 ~pThPi-rLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 191 PPTHPI-RLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp CTTCHH-HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777775 44555566665555 6888888887777653
No 365
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=32.92 E-value=53 Score=29.86 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 107 ASAISETGYLLKEDEN--------NLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 107 ~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
+..++.++.|+..-|. ...++..+|++|...++|++|+...++++.
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3445555555554432 245788999999999999999999999875
No 366
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=31.53 E-value=10 Score=35.50 Aligned_cols=9 Identities=11% Similarity=0.235 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 043837 261 AVEDLKSAA 269 (409)
Q Consensus 261 A~~~~~~al 269 (409)
+++.|.+|+
T Consensus 439 ~i~~~a~AL 447 (545)
T 1iok_A 439 GIAIIRRAL 447 (545)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 333333333
No 367
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=31.45 E-value=59 Score=29.68 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 043837 106 YASAISETGYLLKEDEN--------NLEALLHRGRAYYYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 153 (409)
++..++.++.|+..-|. ...++..+|++|+..++|++|+...++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 34556666666665443 2347889999999999999999999999853
No 368
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=31.43 E-value=1e+02 Score=28.21 Aligned_cols=30 Identities=23% Similarity=0.051 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 043837 124 LEALLHRGRAYYYLADHDVAQRHFQKGLRL 153 (409)
Q Consensus 124 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 153 (409)
..++..+|++|+..++|++|+...++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 447889999999999999999999999864
No 369
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=30.83 E-value=1.7e+02 Score=21.97 Aligned_cols=84 Identities=8% Similarity=0.116 Sum_probs=54.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCChH-HHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 043837 94 LLKVKLLLAAKDYASAISETGYLLKEDEN--NLEALLHRGRAYYYLADHD-VAQRHFQKGLRLDPEHSELKKAYFALKNL 170 (409)
Q Consensus 94 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 170 (409)
+.-+...+-..+|...+..++.. +|. .....+.+|..|....++. +-...+...+.+.. +......|..+|.
T Consensus 12 ~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS-de~yL~YWIyiGR- 86 (161)
T 2ynq_A 12 YIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT-DEQYMLYWIYIGR- 86 (161)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS-CHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC-CHHHHHHHHHHcC-
Confidence 44566677788999998888764 333 3567899999999988765 33344444444432 2333335555554
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHHHH
Q 043837 171 LKKTKSAEDNVSKGKLRVAVEDFKA 195 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~A~~~~~~ 195 (409)
|++++|+..-..
T Consensus 87 -------------g~~~eAlDiA~~ 98 (161)
T 2ynq_A 87 -------------SQSEEALELART 98 (161)
T ss_dssp -------------TCHHHHHHHHHH
T ss_pred -------------CchHHHHHHHHh
Confidence 999999877654
No 370
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.56 E-value=1.2e+02 Score=20.29 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=33.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHH----HHH--HHHHHHHhcCChHHHHHHHHHHHc
Q 043837 95 LKVKLLLAAKDYASAISETGYLLKEDENNLE----ALL--HRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 95 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~--~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
..+..++..|+|=+|-+.++.+-...|.... .+. ..|..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3455666677787787777777776654211 222 333444456666 7777777765
No 371
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=30.22 E-value=1.2e+02 Score=20.10 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 043837 257 DWEGAVEDLKSAAQQSPQDMNIREALMRAEKALK 290 (409)
Q Consensus 257 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 290 (409)
.++.|+.+++++-....++++++.....+....+
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~ 42 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3577888888888877777777766655555443
No 372
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=29.89 E-value=2e+02 Score=22.38 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---------------------------------------HHHHHHHHH
Q 043837 94 LLKVKLLLAAKDYASAISETGYLLKEDENNLE---------------------------------------ALLHRGRAY 134 (409)
Q Consensus 94 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------------------------------~~~~l~~~~ 134 (409)
..+++..+..|+.+.|...+.++-..-..... ....-+.-+
T Consensus 39 I~~AR~aL~~G~~~~Ak~lL~~A~~~L~~a~~d~~~f~ka~~k~~~~~~~~iPI~~~l~v~edf~~tpeK~aAI~~AN~~ 118 (191)
T 3dza_A 39 IQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAKMIADRYVIINASIALSEDYVATPEKESAIQSANEK 118 (191)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTSCHHHHHTTBCTTCCCCSSSSCEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhchHHHHhhcccCCCCCCceEEEcceeeeeccccCChHHHHHHHHHHHH
Q ss_pred HhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc
Q 043837 135 YYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA 198 (409)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 198 (409)
++.|+...|.+.++- ...+-+... ...-|........++..++..|+|.+|-..+..+..
T Consensus 119 Lk~Gd~~~A~~~Lkl-Agvdv~~~~---allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 119 LAKGDQKGAIDTLRL-AGIGVIENQ---YLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHTTCHHHHHHHHHH-TTCEEEEEE---EEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH-cCCchhhhh---hhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
No 373
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=29.70 E-value=1.4e+02 Score=20.72 Aligned_cols=35 Identities=20% Similarity=0.074 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 46 EKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
-..+...-.+++.+..|+...+.|+|++|.+.+.+
T Consensus 13 m~iI~~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~e 47 (109)
T 3k1s_A 13 FQLILNSGNARSFAMEALQFAKQGKMAEADEAMVK 47 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455556677777788888888888888877765
No 374
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=29.06 E-value=12 Score=30.44 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=11.4
Q ss_pred hcccccCCHHHHHHHHHHH
Q 043837 301 LGVSKTASISEIKRAYKKL 319 (409)
Q Consensus 301 l~~~~~~~~~e~~~~y~~~ 319 (409)
-+|....+.++|+..+.+.
T Consensus 74 gnL~~~~te~~L~~~F~~~ 92 (229)
T 3q2s_C 74 GNLTWWTTDEDLTEAVHSL 92 (229)
T ss_dssp ESCCTTCCHHHHHHHHHTT
T ss_pred eCCCCCCCHHHHHHHHHHH
Confidence 3455666666666666553
No 375
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=28.86 E-value=12 Score=30.41 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=5.2
Q ss_pred CHHHHHHHHH
Q 043837 308 SISEIKRAYK 317 (409)
Q Consensus 308 ~~~e~~~~y~ 317 (409)
+.+++.++..
T Consensus 121 ~~~~a~~Ai~ 130 (229)
T 3q2s_C 121 SEASSKKLMD 130 (229)
T ss_dssp CTTHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 4455555554
No 376
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.80 E-value=3.1e+02 Score=24.08 Aligned_cols=87 Identities=5% Similarity=-0.119 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHccC-------------CCCccchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------ChhcH
Q 043837 184 GKLRVAVEDFKAALALD-------------PNHTAHNVHLYLGLCKVLVKLGRGKDALSSCTEALNI--------NEELI 242 (409)
Q Consensus 184 ~~~~~A~~~~~~al~~~-------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~ 242 (409)
.+.++|++.+++..... ..+......+...++..|...++.++|...++++-.. ..-..
T Consensus 90 ~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~ 169 (393)
T 4b4t_O 90 KDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITN 169 (393)
T ss_dssp TCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHH
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 243 EALVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 243 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
..+...+..+...+++..+....-..+.
T Consensus 170 ~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 170 SFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
No 377
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=27.03 E-value=1.5e+02 Score=20.28 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 47 KELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 47 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
..+...-.+++.+..|+...+.|+|++|.+.+.+
T Consensus 10 ~iI~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~e 43 (103)
T 1wcr_A 10 GLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQ 43 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444556677778888888888888888877766
No 378
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=26.94 E-value=1.6e+02 Score=20.33 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 47 KELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 47 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
..+...-.+++.+..|+...+.|+|++|.+.+.+
T Consensus 12 ~iI~~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~e 45 (105)
T 2e2a_A 12 EIVAYAGDARSKLLEALKAAENGDFAKADSLVVE 45 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444556677777788888888888888877765
No 379
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=26.77 E-value=1.7e+02 Score=20.72 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 043837 45 AEKELSQLLQAQSTFDSALKLYDSGEYTKPLEYIDK 80 (409)
Q Consensus 45 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 80 (409)
.-..+...-.+++.+..|+...+.|+|++|.+.+.+
T Consensus 27 ~m~II~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~e 62 (120)
T 3l8r_A 27 AFEIILNSGNARSIVHEAFDAMREKNYILAEQKLQE 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555666778888888888888888888888866
No 380
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.74 E-value=3e+02 Score=23.51 Aligned_cols=105 Identities=10% Similarity=-0.028 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhh-----CCCc--HHH--HHHHHHHHHH-----c-------cCHHHHHHH-
Q 043837 55 AQSTFDSALKLYDSGEYTKPLEYIDKVVLVF-----SPAC--SKA--KLLKVKLLLA-----A-------KDYASAISE- 112 (409)
Q Consensus 55 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~p~~--~~~--~~~~a~~~~~-----~-------~~~~~A~~~- 112 (409)
....+..|..++..|++++|+..|..++..+ +... .++ +..++.-|.. + .+....++.
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 3446778999999999999999998844332 1110 111 1112111110 0 011111110
Q ss_pred -HHHHHhhCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCcHH
Q 043837 113 -TGYLLKEDENNLE-ALLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSE 159 (409)
Q Consensus 113 -~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 159 (409)
|-.-.++.|.... ++..--...++.++|..|....++.|++.|....
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 1111111222111 2222234667889999999999999999986543
No 381
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=26.38 E-value=2.1e+02 Score=21.67 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 225 KDALSSCTEALNINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
..|...+..+...+|....+.-.+..++..+.+....+..|...+..+|.
T Consensus 73 ~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 73 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 35666677777788887778888888888888777777777666666664
No 382
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.15 E-value=2e+02 Score=21.35 Aligned_cols=50 Identities=10% Similarity=-0.055 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhc--ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 043837 225 KDALSSCTEALNI--NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQ 274 (409)
Q Consensus 225 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 274 (409)
.++...|.-.... -...+..|...|..+...|++.+|.+.|+..++....
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4577777777654 4567888899999999999999999999999997644
No 383
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=26.09 E-value=14 Score=34.50 Aligned_cols=14 Identities=0% Similarity=-0.273 Sum_probs=6.8
Q ss_pred cHHHHHHHHHHHHH
Q 043837 89 CSKAKLLKVKLLLA 102 (409)
Q Consensus 89 ~~~~~~~~a~~~~~ 102 (409)
+.......+.+...
T Consensus 146 d~~~L~~va~tsl~ 159 (543)
T 3ruv_A 146 DKEILTKIAMTSIT 159 (543)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 44455555554443
No 384
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.08 E-value=1.5e+02 Score=19.85 Aligned_cols=55 Identities=9% Similarity=-0.066 Sum_probs=33.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcChhcH----HHHHH--HHHHHHhccCHHHHHHHHHHHHh
Q 043837 214 LCKVLVKLGRGKDALSSCTEALNINEELI----EALVQ--RGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 214 la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~--la~~~~~~~~~~~A~~~~~~al~ 270 (409)
.|..++..|+|=+|-+.++.+....|... ..+.. .|..+...|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 45566677888888888888877665421 12222 23334455666 7777777765
No 385
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.66 E-value=1.4e+02 Score=19.37 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=8.8
Q ss_pred hccCHHHHHHHHHHHHh
Q 043837 254 LTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 254 ~~~~~~~A~~~~~~al~ 270 (409)
..|++++|+.+|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34555555555555544
No 386
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.41 E-value=3.4e+02 Score=23.70 Aligned_cols=44 Identities=11% Similarity=-0.027 Sum_probs=32.2
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043837 109 AISETGYLLKE-----DENNLEALLHRGRAYYYLADHDVAQRHFQKGLR 152 (409)
Q Consensus 109 A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 152 (409)
++.+|.+++.. .......|..+|-.+++.+++.+|+..+..+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 56666666653 233455678888899999999999998887654
No 387
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=25.34 E-value=1.5e+02 Score=27.33 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALN 236 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 236 (409)
...++..+|.+|+..++|++|+..+++++.
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777765
No 388
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.99 E-value=1.6e+02 Score=26.69 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
...++..+|.+|+..++|++|+..+++++..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 4557777888888888888888888888753
No 389
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=24.14 E-value=3.1e+02 Score=22.73 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=45.5
Q ss_pred HHHhhHHhcCCHHHHHHHHHHH-------HccCCCCccchHHHHHHHHHHH-----------HHcCC-------hhHHHH
Q 043837 175 KSAEDNVSKGKLRVAVEDFKAA-------LALDPNHTAHNVHLYLGLCKVL-----------VKLGR-------GKDALS 229 (409)
Q Consensus 175 ~~~~~~~~~~~~~~A~~~~~~a-------l~~~~~~~~~~~~~~~~la~~~-----------~~~~~-------~~~A~~ 229 (409)
...++.++.|+.++.+..++-+ |+........+...+...|.++ ++.++ ++.|++
T Consensus 27 ~msre~le~g~i~~sv~LLNGIIHECDRLLR~~e~~~~Lpd~FhAIYAlALl~lSELa~~a~Fk~ede~~V~eFFDaALE 106 (346)
T 3qtm_A 27 EMSREKLENDDIDASVSLVFGTIHEADRILRNTEDISTLPKDFHAAYSSALLAVSELFEIAQKRLKETNTEESYIDAAIE 106 (346)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHHH
T ss_pred HHHHHHhhccCchhhhHHHcChHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhHHHhhHHhhccCchhhhHHHHHHHHHH
Confidence 3345566678888887776543 3332221112333444444444 12222 355666
Q ss_pred HHHHHHhcChhcHHHHHHHHHHHHh
Q 043837 230 SCTEALNINEELIEALVQRGEAKLL 254 (409)
Q Consensus 230 ~~~~al~~~p~~~~~~~~la~~~~~ 254 (409)
-++-.++..|++....+.++.+.+.
T Consensus 107 RielGLe~~p~s~~L~la~SKILlq 131 (346)
T 3qtm_A 107 RAQLGLDAPGNESRLFLALARAYLE 131 (346)
T ss_dssp HHHHGGGSSSCCHHHHHHHHHHHHH
T ss_pred HHHhhhhhCCCChhHHHHHHHHHHH
Confidence 6666677789998888777777664
No 390
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=24.11 E-value=16 Score=34.05 Aligned_cols=10 Identities=50% Similarity=0.979 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 043837 399 GGFPGGFGFN 408 (409)
Q Consensus 399 gg~~g~~~~~ 408 (409)
+||+|||.||
T Consensus 532 ~~~~~~~~~~ 541 (546)
T 3rtk_A 532 GGDMGGMDFH 541 (546)
T ss_dssp ----------
T ss_pred CCCcCccccc
Confidence 3455666665
No 391
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=24.02 E-value=3.1e+02 Score=22.68 Aligned_cols=65 Identities=17% Similarity=0.029 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHh-----c--ChhcHH---HHHHHHHHHH-hccCHHHHHHHH
Q 043837 207 NVHLYLGLCKVLVKLGR----------GKDALSSCTEALN-----I--NEELIE---ALVQRGEAKL-LTEDWEGAVEDL 265 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~-----~--~p~~~~---~~~~la~~~~-~~~~~~~A~~~~ 265 (409)
.+..+-..|..|..+-+ .+.|...|+.|++ + .|.+|. ...+.+..|+ -+++.++|....
T Consensus 141 kVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lA 220 (268)
T 3efz_A 141 RAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFA 220 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444556766654322 2456777777754 3 566653 2233444444 579999999999
Q ss_pred HHHHhh
Q 043837 266 KSAAQQ 271 (409)
Q Consensus 266 ~~al~~ 271 (409)
++|+..
T Consensus 221 k~AFde 226 (268)
T 3efz_A 221 NRAIQA 226 (268)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 888765
No 392
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=23.37 E-value=4e+02 Score=23.79 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhc-----ChhcHHHHHHHHHHHHhccCHHHHHHHHHHHHhh------CCCcHHHHHHHHHH
Q 043837 226 DALSSCTEALNI-----NEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQQ------SPQDMNIREALMRA 285 (409)
Q Consensus 226 ~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~ 285 (409)
.++..|.+++.. ...+...|..+|-.+...+++.+|+..+..+-.. ..+|.+++..+..+
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eI 352 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 352 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHH
Confidence 345666666653 2345667788899999999999999999888653 34556666554433
No 393
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=23.28 E-value=64 Score=17.00 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHhC
Q 043837 4 YSEALDDLNTAIEAD 18 (409)
Q Consensus 4 ~~~A~~~~~~al~~~ 18 (409)
|++|+..|+.+++..
T Consensus 18 yDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 18 YDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHhcC
Confidence 778888888877654
No 394
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.15 E-value=3.1e+02 Score=26.27 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=12.8
Q ss_pred HHHHHHHccCHHHHHHHHHHH
Q 043837 96 KVKLLLAAKDYASAISETGYL 116 (409)
Q Consensus 96 ~a~~~~~~~~~~~A~~~~~~a 116 (409)
.|.-....|++++|+.+|.-+
T Consensus 449 aA~~ae~~G~~~dAi~LY~La 469 (661)
T 2qx5_A 449 AARRADEDGRIYDSILLYQLA 469 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHh
Confidence 344555667777777666544
No 395
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.24 E-value=1.6e+02 Score=26.60 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 043837 207 NVHLYLGLCKVLVKLGRGKDALSSCTEALNI 237 (409)
Q Consensus 207 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 237 (409)
...++..+|.+|+..++|++|+..+++++..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5668889999999999999999999999864
No 396
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.04 E-value=3e+02 Score=21.91 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHH--------HHHHHHHHHhcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 043837 106 YASAISETGYLLKEDENNLEA--------LLHRGRAYYYLADHDVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKT 174 (409)
Q Consensus 106 ~~~A~~~~~~al~~~p~~~~~--------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 174 (409)
.+.|+..++.+-+-.+-.... -...-.++...|.+++|.+.+++.+.-++.+.. ....|..+....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~k---Lr~kL~~II~~K 161 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQK---LRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchH---HHHHHHHHHhcc
Confidence 577888888877666532222 124445778899999999999999988777665 555555555444
No 397
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=21.85 E-value=0.73 Score=42.01 Aligned_cols=146 Identities=17% Similarity=0.113 Sum_probs=100.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCh
Q 043837 61 SALKLYDSGEYTKPLEYIDKVVLVFSPACSKAKLLKVKLLLAAKDYASAISETGYLLKEDENNLEALLHRGRAYYYLADH 140 (409)
Q Consensus 61 ~a~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 140 (409)
+|.++...++|+.|+....+ .+++.+|-.....+...+++.-|..+--.++- .|+.. -.+...|...|-+
T Consensus 176 LAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f 245 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYF 245 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCH
Confidence 45556667999999988765 46778888888899999999988777666653 44432 2345567888999
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHc-c-CCCCc--cchHHHHHHHHH
Q 043837 141 DVAQRHFQKGLRLDPEHSELKKAYFALKNLLKKTKSAEDNVSKGKLRVAVEDFKAALA-L-DPNHT--AHNVHLYLGLCK 216 (409)
Q Consensus 141 ~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-~~~~~--~~~~~~~~~la~ 216 (409)
++-+..++.++.+..-+.. .+..++.+|.. =+.++-.++++.-.. + -|.-. -.....|..+..
T Consensus 246 ~ELIsLlEaglglErAHmG---mFTELaILYsK----------Y~PeKlmEHlklf~sriNipKviracE~ahLW~Elvf 312 (624)
T 3lvg_A 246 EELITMLEAALGLERAHMG---MFTELAILYSK----------FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 312 (624)
T ss_dssp TTSTTTHHHHTTSTTCCHH---HHHHHHHHHHS----------SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCchhHH---HHHHHHHHHHh----------cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999888888 88888888754 244444454443211 0 01100 013456777888
Q ss_pred HHHHcCChhHHHH
Q 043837 217 VLVKLGRGKDALS 229 (409)
Q Consensus 217 ~~~~~~~~~~A~~ 229 (409)
+|..-.+|+.|..
T Consensus 313 LY~~ydE~DnA~l 325 (624)
T 3lvg_A 313 LYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHTCHHHHHH
T ss_pred HHhcchhHHHHHH
Confidence 8888888876653
No 398
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=20.60 E-value=21 Score=33.36 Aligned_cols=18 Identities=22% Similarity=0.173 Sum_probs=10.2
Q ss_pred cCHHHHHHHHHHHHhhCC
Q 043837 256 EDWEGAVEDLKSAAQQSP 273 (409)
Q Consensus 256 ~~~~~A~~~~~~al~~~p 273 (409)
++..-+++.|.+|++.-|
T Consensus 428 g~~q~~i~~~a~ALe~ip 445 (545)
T 1a6d_A 428 GREQLAIEAFAKALEIIP 445 (545)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 344456666666666544
No 399
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=20.57 E-value=3.7e+02 Score=22.29 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 043837 4 YSEALDDLNTAIEADPTLSEAYFHRGSVLRQL 35 (409)
Q Consensus 4 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 35 (409)
++.|++-++--++..|++....+.+++++.+.
T Consensus 101 FDaALERielGLe~~p~s~~L~la~SKILlqr 132 (346)
T 3qtm_A 101 IDAAIERAQLGLDAPGNESRLFLALARAYLEK 132 (346)
T ss_dssp HHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHHH
Confidence 46777778878888999998888888887644
No 400
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.15 E-value=1.5e+02 Score=20.89 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=14.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh
Q 043837 245 LVQRGEAKLLTEDWEGAVEDLKSAAQ 270 (409)
Q Consensus 245 ~~~la~~~~~~~~~~~A~~~~~~al~ 270 (409)
+...|...-..|+.+.|+.+|++.+.
T Consensus 25 ~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 25 FVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 44455555556666666666665543
No 401
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=20.14 E-value=27 Score=25.97 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=15.4
Q ss_pred hhcccccCCHHHHHHHHHHH
Q 043837 300 ILGVSKTASISEIKRAYKKL 319 (409)
Q Consensus 300 ~l~~~~~~~~~e~~~~y~~~ 319 (409)
+-+|....+.++++..+.+.
T Consensus 44 V~nlp~~~t~~~l~~~F~~~ 63 (156)
T 1h2v_Z 44 VGNLSFYTTEEQIYELFSKS 63 (156)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44677888899998888764
Done!