Query 043839
Match_columns 415
No_of_seqs 314 out of 3422
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:48:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-34 9.7E-39 296.0 16.8 345 14-368 401-846 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.7E-31 1.4E-35 285.3 19.8 353 14-387 426-905 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.9E-24 4.1E-29 233.8 15.8 278 100-386 118-439 (968)
4 PLN00113 leucine-rich repeat r 99.9 5.9E-24 1.3E-28 230.0 17.8 276 100-385 69-390 (968)
5 KOG0444 Cytoskeletal regulator 99.8 2E-23 4.3E-28 199.5 -7.1 272 100-387 55-374 (1255)
6 KOG4194 Membrane glycoprotein 99.8 8.4E-19 1.8E-23 166.9 8.8 259 121-387 77-428 (873)
7 PLN03210 Resistant to P. syrin 99.8 4.5E-18 9.8E-23 185.4 15.5 253 121-387 531-837 (1153)
8 KOG4194 Membrane glycoprotein 99.7 2.1E-19 4.6E-24 171.0 -0.1 258 121-395 172-465 (873)
9 KOG0444 Cytoskeletal regulator 99.7 2.6E-19 5.6E-24 171.6 -2.9 258 110-383 112-394 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 6.9E-20 1.5E-24 167.2 -8.6 262 116-388 152-541 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 4.4E-19 9.5E-24 162.0 -9.1 230 145-391 63-313 (565)
12 KOG0618 Serine/threonine phosp 99.6 1.1E-17 2.4E-22 167.1 -2.3 271 102-387 47-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.5 4.5E-13 9.8E-18 137.5 15.0 242 102-387 203-457 (788)
14 cd00116 LRR_RI Leucine-rich re 99.4 3.1E-14 6.8E-19 134.7 3.0 174 143-321 16-229 (319)
15 PRK15370 E3 ubiquitin-protein 99.4 6.8E-13 1.5E-17 136.8 11.8 231 102-387 180-427 (754)
16 KOG0617 Ras suppressor protein 99.4 3.2E-15 6.9E-20 122.0 -5.8 150 121-301 32-185 (264)
17 KOG0618 Serine/threonine phosp 99.4 2.5E-14 5.4E-19 143.4 -2.0 267 99-384 218-509 (1081)
18 PRK15387 E3 ubiquitin-protein 99.4 3.3E-12 7.2E-17 131.2 11.5 232 100-372 222-466 (788)
19 KOG0617 Ras suppressor protein 99.4 7.7E-15 1.7E-19 119.7 -6.4 164 146-373 29-194 (264)
20 cd00116 LRR_RI Leucine-rich re 99.3 2.3E-13 5.1E-18 128.7 0.8 228 154-387 2-290 (319)
21 PRK15370 E3 ubiquitin-protein 99.3 8.6E-12 1.9E-16 128.7 7.9 207 150-386 178-399 (754)
22 KOG4237 Extracellular matrix p 99.2 1.2E-12 2.7E-17 120.0 -0.6 243 116-363 61-358 (498)
23 KOG1909 Ran GTPase-activating 99.2 6.6E-12 1.4E-16 113.7 1.3 219 143-363 23-310 (382)
24 KOG4237 Extracellular matrix p 99.1 1.4E-11 3.1E-16 113.1 -1.4 209 98-322 65-355 (498)
25 KOG4658 Apoptotic ATPase [Sign 99.0 4.9E-10 1.1E-14 117.6 8.6 232 116-355 516-798 (889)
26 KOG3207 Beta-tubulin folding c 98.9 8.6E-11 1.9E-15 109.4 -1.3 228 146-390 117-369 (505)
27 KOG2120 SCF ubiquitin ligase, 98.7 3.4E-10 7.3E-15 100.6 -4.3 169 191-362 187-374 (419)
28 KOG2120 SCF ubiquitin ligase, 98.7 1.5E-10 3.3E-15 102.8 -6.5 173 213-392 185-380 (419)
29 KOG3207 Beta-tubulin folding c 98.7 3.8E-09 8.2E-14 98.6 0.9 166 212-386 120-312 (505)
30 PF14580 LRR_9: Leucine-rich r 98.6 3.1E-08 6.8E-13 84.1 4.2 121 148-270 17-149 (175)
31 KOG1259 Nischarin, modulator o 98.6 2E-08 4.2E-13 89.7 3.0 121 234-365 283-413 (490)
32 KOG1909 Ran GTPase-activating 98.6 1.3E-08 2.8E-13 92.7 1.8 214 121-338 29-309 (382)
33 KOG4341 F-box protein containi 98.6 4.5E-09 9.8E-14 97.6 -1.4 264 122-392 138-443 (483)
34 COG4886 Leucine-rich repeat (L 98.5 1.4E-07 2.9E-12 92.2 6.8 168 188-368 115-294 (394)
35 KOG0532 Leucine-rich repeat (L 98.5 6.3E-09 1.4E-13 100.2 -4.4 154 153-319 78-240 (722)
36 KOG1259 Nischarin, modulator o 98.5 4.3E-08 9.3E-13 87.6 0.7 117 209-339 280-411 (490)
37 KOG0532 Leucine-rich repeat (L 98.5 1.1E-08 2.5E-13 98.4 -3.1 153 121-309 97-253 (722)
38 COG4886 Leucine-rich repeat (L 98.4 1.8E-07 3.9E-12 91.3 4.1 167 144-322 110-286 (394)
39 PF14580 LRR_9: Leucine-rich r 98.3 4E-07 8.7E-12 77.3 3.9 122 188-320 18-147 (175)
40 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.4E-11 60.3 3.5 59 327-386 1-60 (61)
41 PLN03150 hypothetical protein; 98.1 4.3E-06 9.4E-11 86.1 6.6 98 214-321 419-523 (623)
42 PLN03150 hypothetical protein; 98.1 4.5E-06 9.7E-11 85.9 6.6 96 291-386 420-526 (623)
43 KOG4341 F-box protein containi 98.1 1E-07 2.2E-12 88.8 -5.0 253 121-384 163-461 (483)
44 COG5238 RNA1 Ran GTPase-activa 98.1 1.8E-06 3.8E-11 76.4 2.2 218 146-365 26-317 (388)
45 KOG2982 Uncharacterized conser 98.0 2.3E-06 4.9E-11 76.7 1.0 86 286-387 197-291 (418)
46 KOG2982 Uncharacterized conser 97.9 8.7E-06 1.9E-10 73.0 2.7 62 323-386 195-260 (418)
47 PF13855 LRR_8: Leucine rich r 97.8 2E-05 4.4E-10 54.6 3.1 56 122-181 1-57 (61)
48 KOG3665 ZYG-1-like serine/thre 97.7 2E-05 4.4E-10 81.3 3.5 34 289-322 195-229 (699)
49 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.3E-10 82.1 1.3 73 121-197 147-228 (699)
50 PF12799 LRR_4: Leucine Rich r 97.6 5.9E-05 1.3E-09 48.3 3.1 33 150-182 1-33 (44)
51 KOG1947 Leucine rich repeat pr 97.6 5.8E-06 1.3E-10 82.7 -3.4 230 144-388 182-440 (482)
52 KOG0531 Protein phosphatase 1, 97.5 1.4E-05 3.1E-10 78.4 -0.8 207 146-365 91-319 (414)
53 PRK15386 type III secretion pr 97.5 0.00037 8E-09 66.8 8.6 73 146-245 48-122 (426)
54 KOG1859 Leucine-rich repeat pr 97.5 1.2E-06 2.7E-11 87.0 -9.2 94 289-387 187-291 (1096)
55 PRK15386 type III secretion pr 97.4 0.00056 1.2E-08 65.5 8.4 131 231-385 48-187 (426)
56 PF00931 NB-ARC: NB-ARC domain 97.3 5.5E-05 1.2E-09 70.4 0.3 44 14-57 240-284 (287)
57 KOG1859 Leucine-rich repeat pr 97.3 5.3E-06 1.1E-10 82.6 -7.2 158 143-322 102-263 (1096)
58 KOG0531 Protein phosphatase 1, 97.3 4.1E-05 8.8E-10 75.2 -1.5 226 147-387 69-317 (414)
59 PF12799 LRR_4: Leucine Rich r 97.2 0.00021 4.5E-09 45.8 2.2 36 328-364 2-37 (44)
60 COG5238 RNA1 Ran GTPase-activa 96.9 0.00028 6E-09 62.8 0.7 175 145-337 87-313 (388)
61 KOG1947 Leucine rich repeat pr 96.4 0.00036 7.9E-09 69.7 -2.8 101 289-389 295-415 (482)
62 KOG4579 Leucine-rich repeat (L 96.2 0.0002 4.4E-09 57.2 -4.3 83 285-384 50-132 (177)
63 KOG1644 U2-associated snRNP A' 96.0 0.015 3.2E-07 49.9 5.4 89 283-387 59-152 (233)
64 KOG1644 U2-associated snRNP A' 95.9 0.0097 2.1E-07 51.0 4.2 11 289-299 140-150 (233)
65 KOG2123 Uncharacterized conser 95.8 0.0008 1.7E-08 60.2 -2.9 55 121-182 18-72 (388)
66 PF00560 LRR_1: Leucine Rich R 95.6 0.0054 1.2E-07 32.6 1.0 21 151-171 1-21 (22)
67 KOG2123 Uncharacterized conser 95.6 0.00058 1.2E-08 61.1 -4.8 75 325-400 61-143 (388)
68 KOG2739 Leucine-rich acidic nu 95.2 0.0093 2E-07 53.0 1.5 59 188-246 64-127 (260)
69 KOG2739 Leucine-rich acidic nu 95.1 0.011 2.4E-07 52.6 1.7 60 327-387 65-128 (260)
70 KOG4579 Leucine-rich repeat (L 95.1 0.0046 1E-07 49.6 -0.5 58 121-182 52-109 (177)
71 KOG3864 Uncharacterized conser 94.7 0.0044 9.6E-08 53.0 -1.8 83 290-386 102-187 (221)
72 PF13504 LRR_7: Leucine rich r 93.8 0.035 7.6E-07 27.4 1.1 17 150-166 1-17 (17)
73 PF00560 LRR_1: Leucine Rich R 93.0 0.043 9.4E-07 29.1 0.7 20 352-372 1-20 (22)
74 PF13306 LRR_5: Leucine rich r 92.7 0.21 4.6E-06 39.8 4.9 13 146-158 8-20 (129)
75 PF13306 LRR_5: Leucine rich r 91.4 0.59 1.3E-05 37.2 6.0 13 347-360 100-112 (129)
76 KOG3864 Uncharacterized conser 91.1 0.036 7.9E-07 47.5 -1.4 69 283-365 120-190 (221)
77 smart00370 LRR Leucine-rich re 87.7 0.44 9.5E-06 26.2 1.8 22 149-170 1-22 (26)
78 smart00369 LRR_TYP Leucine-ric 87.7 0.44 9.5E-06 26.2 1.8 22 149-170 1-22 (26)
79 smart00367 LRR_CC Leucine-rich 75.1 1.9 4E-05 23.7 1.2 14 351-364 2-15 (26)
80 PF13516 LRR_6: Leucine Rich r 74.0 0.66 1.4E-05 24.9 -0.8 15 149-163 1-15 (24)
81 KOG4308 LRR-containing protein 65.7 0.031 6.7E-07 55.5 -12.6 44 343-387 396-444 (478)
82 smart00364 LRR_BAC Leucine-ric 64.2 4.6 0.0001 22.3 1.2 18 150-167 2-19 (26)
83 KOG0473 Leucine-rich repeat pr 63.5 0.49 1.1E-05 41.7 -4.1 83 146-245 38-121 (326)
84 KOG4308 LRR-containing protein 60.2 0.052 1.1E-06 54.0 -12.2 181 190-386 88-301 (478)
85 smart00365 LRR_SD22 Leucine-ri 51.6 11 0.00025 20.8 1.5 14 150-163 2-15 (26)
86 KOG0473 Leucine-rich repeat pr 50.6 1.4 3E-05 39.0 -3.5 83 184-270 37-120 (326)
87 smart00368 LRR_RI Leucine rich 50.1 12 0.00026 20.9 1.5 14 150-163 2-15 (28)
88 KOG3763 mRNA export factor TAP 37.8 15 0.00033 36.8 1.0 87 286-386 216-312 (585)
89 PF15385 SARG: Specifically an 35.4 16 0.00035 36.4 0.8 16 17-32 7-22 (497)
90 KOG3763 mRNA export factor TAP 26.7 33 0.0007 34.5 1.2 62 324-386 215-281 (585)
91 PF05725 FNIP: FNIP Repeat; I 21.2 1.8E+02 0.0038 18.1 3.5 9 288-296 11-19 (44)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-34 Score=296.04 Aligned_cols=345 Identities=26% Similarity=0.297 Sum_probs=248.3
Q ss_pred hhcccCCCccchHHHHhhcccCCCCceechhhHHH---------------------------hhcCCCeeeeecCCCCce
Q 043839 14 QIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ---------------------------LINPSRLHSSKRRAGGTI 66 (415)
Q Consensus 14 ~~lSY~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~---------------------------L~~~~li~~~~~~~~~~~ 66 (415)
+++|||+||+++|.||+|||+|||||+|+++.|+. |+.+++++..+.. ++.
T Consensus 401 LklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~ 478 (889)
T KOG4658|consen 401 LKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRK 478 (889)
T ss_pred hhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cce
Confidence 45999999999999999999999999999999999 6666666654432 677
Q ss_pred eEEEeChHHHHHHHHHhh-----hcCceEEcC-----CCCC-CCCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCC
Q 043839 67 KACYVPSIVYTSLVLVAD-----KTGFVRMPH-----MEKE-SLANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSES 134 (415)
Q Consensus 67 ~~~~mhdli~~l~~~~~~-----~~~~~~~~~-----~~~~-~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~ 134 (415)
.+|+|||++||||.++++ +++++.... ..+. ....+||+++. ++....++... ++.++||.+.++..
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceEEEeecch
Confidence 899999999999999999 666444432 1111 56778999999 98888888888 88999999999863
Q ss_pred ccccccchHHHhccCCcccEEEcCCcc-cccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCC
Q 043839 135 DHLAGIDCENFCKKFKHLRVLNLGSAV-LDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPN 206 (415)
Q Consensus 135 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p 206 (415)
.. ..+...+|..++.|++||+++|. +..+|+.|++|.|||||++++ .+++++++|.+|++..+.....+|
T Consensus 558 ~l--~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 558 WL--LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hh--hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 11 45567889999999999999876 669999999999999999999 677889999999998665555566
Q ss_pred CcccCccccceeccccCC----CCCccccCCCCCCCeEEEecccC-----------------------cchhcHHHhhhc
Q 043839 207 NYSSSLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLS-----------------------YHHSGVSKSLCE 259 (415)
Q Consensus 207 ~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~-----------------------~~~~~~~~~l~~ 259 (415)
.....+++|++|.+.... ......+..+.+|+.+.+..... ......+.++..
T Consensus 636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~ 715 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS 715 (889)
T ss_pred chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc
Confidence 666679999999987765 44455566777777777755431 011223345566
Q ss_pred cCCCcEEEeecCcc---c---------cc---cc------cc-cc----CCCCCCCCceEEEEEccccCCCCchhhcCCC
Q 043839 260 LHKLECLKLVNEGK---M---------WQ---FS------RM-IL----SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLP 313 (415)
Q Consensus 260 l~~L~~L~l~~~~~---i---------l~---~l------~L-lp----~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~ 313 (415)
+.+|+.|.+..++. . +. .+ +. .| |. .+|++|+.|.+..|....++++....+.
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALL 794 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-hccCcccEEEEecccccccCCCHHHHhh
Confidence 77888888776221 0 00 00 00 12 22 3458888888888877667777666666
Q ss_pred CCCeEeeccCCCCCcccEE-EeccCCCccceEEcCCCccCccEEEEecCcccCCCh
Q 043839 314 LLEVLKLKQNSSFPLLKIL-HLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLP 368 (415)
Q Consensus 314 ~L~~L~l~~~~~~~~L~~L-~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp 368 (415)
.++.+.+ .|.+++.+ .+.+.+.+..+-..--.++.|+.+.+..||.++.+|
T Consensus 795 ~l~~~i~----~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 795 ELKELIL----PFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred hcccEEe----cccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc
Confidence 6665443 45555555 355555555444433444557777777776665544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=6.7e-31 Score=285.26 Aligned_cols=353 Identities=16% Similarity=0.099 Sum_probs=224.4
Q ss_pred hhcccCCCcc-chHHHHhhcccCCCCceechhhHHH-------------hhcCCCeeeeecCCCCceeEEEeChHHHHHH
Q 043839 14 QIYSVMGLPF-HLKVCYIYLCVYRPSIEISTRQLYQ-------------LINPSRLHSSKRRAGGTIKACYVPSIVYTSL 79 (415)
Q Consensus 14 ~~lSY~~L~~-~lk~cfl~~~~fp~~~~i~~~~Li~-------------L~~~~li~~~~~~~~~~~~~~~mhdli~~l~ 79 (415)
+++||++|++ ..|.||++||+||.+..++....+. |++++|++... ..++|||++|+||
T Consensus 426 L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~ 498 (1153)
T PLN03210 426 LRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMG 498 (1153)
T ss_pred HHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC-------CeEEhhhHHHHHH
Confidence 4589999987 6999999999999997765433322 99999998642 2489999999999
Q ss_pred HHHhhhcC-------ceEEcCC------CCCCCCceeEEEEEeCCCCCcc--CC-CC--CCceeEEEeec----------
Q 043839 80 VLVADKTG-------FVRMPHM------EKESLANVKRCFILKDLTEFFP--LE-HS--DMYLQSFLNHS---------- 131 (415)
Q Consensus 80 ~~~~~~~~-------~~~~~~~------~~~~~~~~r~l~l~~~~~~~~~--~~-~~--~~~Lr~L~~~~---------- 131 (415)
+.+++++. +....++ .......++.+++. -.....+ .. .+ +++|+.|.++.
T Consensus 499 r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~-~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~ 577 (1153)
T PLN03210 499 KEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD-IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR 577 (1153)
T ss_pred HHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEec-cCccceeeecHHHHhcCccccEEEEecccccccccce
Confidence 99997653 1111000 00023445555554 2222211 11 11 55555555543
Q ss_pred ---------------------CCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------c
Q 043839 132 ---------------------SESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------P 183 (415)
Q Consensus 132 ---------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~ 183 (415)
+.. .. +|..+ .+.+|++|++.++.+..+|..+..+++|++|++++ +
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l----~~-lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPL----RC-MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCC----CC-CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC
Confidence 322 11 12222 35678888888888878888888888888888876 5
Q ss_pred cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccC
Q 043839 184 LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH 261 (415)
Q Consensus 184 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 261 (415)
.++.+++|++|++++|.....+|..++.+++|+.|++.+|. ..+|..+ ++++|+.|.+++|. ....+|.. ..
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~--~L~~~p~~---~~ 725 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS--RLKSFPDI---ST 725 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC--Cccccccc---cC
Confidence 66778888888888777778888888888888888888876 6666655 67788888887772 33333321 23
Q ss_pred CCcEEEeecCccc-----------cccccc--------------cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCC
Q 043839 262 KLECLKLVNEGKM-----------WQFSRM--------------IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLL 315 (415)
Q Consensus 262 ~L~~L~l~~~~~i-----------l~~l~L--------------lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L 315 (415)
+|+.|++++ +.+ |..|.+ ++ .....|++|+.|++++|.....+|..++++++|
T Consensus 726 nL~~L~L~~-n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L 804 (1153)
T PLN03210 726 NISWLDLDE-TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804 (1153)
T ss_pred CcCeeecCC-CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence 444444444 211 000000 00 001112456666666665444555556666666
Q ss_pred CeEeecc---------CCCCCcccEEEeccCC--------------------CccceEEcCCCccCccEEEEecCcccCC
Q 043839 316 EVLKLKQ---------NSSFPLLKILHLKSML--------------------WLEEWTMGAGSMPKLESLILNPCAYLRK 366 (415)
Q Consensus 316 ~~L~l~~---------~~~~~~L~~L~l~~~~--------------------~l~~l~~~~~~l~~L~~L~l~~c~~~~~ 366 (415)
+.|++++ ...+++|+.|++++|. .++.+|..++.+++|+.|++++|+.+..
T Consensus 805 ~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 6666654 1123444444444443 4455666778889999999999999988
Q ss_pred ChhhhcCCCCCCeEEEecCCh
Q 043839 367 LPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 367 lp~~l~~l~~L~~L~l~~c~~ 387 (415)
+|..+..++.|+.+++++|+.
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cCcccccccCCCeeecCCCcc
Confidence 998888899999999999974
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.9e-24 Score=233.83 Aligned_cols=278 Identities=23% Similarity=0.197 Sum_probs=165.1
Q ss_pred CceeEEEEEeCCCCC-ccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCce
Q 043839 100 ANVKRCFILKDLTEF-FPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKY 177 (415)
Q Consensus 100 ~~~r~l~l~~~~~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~ 177 (415)
..+|++.+. ++... .++....++|++|.+.++.. ....+..+.++++|++|++++|.+. .+|..++++++|++
T Consensus 118 ~~L~~L~Ls-~n~l~~~~p~~~l~~L~~L~Ls~n~~----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 118 SSLRYLNLS-NNNFTGSIPRGSIPNLETLDLSNNML----SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCEEECc-CCccccccCccccCCCCEEECcCCcc----cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 445555555 43332 12222256666666666655 2334556777777777777777766 67777777777777
Q ss_pred EecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccC
Q 043839 178 LKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLS 247 (415)
Q Consensus 178 L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~ 247 (415)
|++++ ..++++++|++|++++|.....+|..++.+++|++|++.+|. +.+|..++.+++|+.|++++|
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-- 270 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-- 270 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC--
Confidence 77766 445667777777777666666777777777777777777776 566667777777777777776
Q ss_pred cchhcHHHhhhccCCCcEEEeecCccc-------------ccccc-----c---cc-CCCCCCCCceEEEEEccccCCCC
Q 043839 248 YHHSGVSKSLCELHKLECLKLVNEGKM-------------WQFSR-----M---IL-SEYKFPPTLTQLSLSNTKLMEDP 305 (415)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~i-------------l~~l~-----L---lp-~~~~lp~~L~~L~l~~~~l~~~~ 305 (415)
...+.+|.++..+++|+.|++++ +.+ |+.|. + +| ++..+ ++|+.|++++|.+.+..
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEI 348 (968)
T ss_pred eeeccCchhHhhccCcCEEECcC-CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcC
Confidence 45556666777777777777766 311 11000 0 23 33344 44444444444444444
Q ss_pred chhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCC
Q 043839 306 MPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIK 375 (415)
Q Consensus 306 ~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~ 375 (415)
|..++.+++|+.|++++ ...+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 44444444444444443 11233455555555533334455556666666666666666666666666666
Q ss_pred CCCeEEEecCC
Q 043839 376 NLCKLELHWPQ 386 (415)
Q Consensus 376 ~L~~L~l~~c~ 386 (415)
+|+.|++++|.
T Consensus 429 ~L~~L~Ls~N~ 439 (968)
T PLN00113 429 LVYFLDISNNN 439 (968)
T ss_pred CCCEEECcCCc
Confidence 77777766553
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=5.9e-24 Score=229.98 Aligned_cols=276 Identities=22% Similarity=0.229 Sum_probs=145.5
Q ss_pred CceeEEEEEeCCCCCc-cCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCC
Q 043839 100 ANVKRCFILKDLTEFF-PLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHL 175 (415)
Q Consensus 100 ~~~r~l~l~~~~~~~~-~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L 175 (415)
.+++.+.+. .+.... ++... +++|++|.+.++... ..++...+..+++|++|++++|.++ .+|. +.+++|
T Consensus 69 ~~v~~L~L~-~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L 142 (968)
T PLN00113 69 SRVVSIDLS-GKNISGKISSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142 (968)
T ss_pred CcEEEEEec-CCCccccCChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence 356666666 443321 22222 677777777766552 2334444556666666666666655 4442 345556
Q ss_pred ceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecc
Q 043839 176 KYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGD 245 (415)
Q Consensus 176 ~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 245 (415)
++|++++ ..++++++|++|++++|.....+|..++++++|++|++.+|. +.+|..++++++|+.|++++|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 6665555 234555555555555555555555555555555555555555 445555555555555555555
Q ss_pred cCcchhcHHHhhhccCCCcEEEeecCccc-------------cccc-----cc---cc-CCCCCCCCceEEEEEccccCC
Q 043839 246 LSYHHSGVSKSLCELHKLECLKLVNEGKM-------------WQFS-----RM---IL-SEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~i-------------l~~l-----~L---lp-~~~~lp~~L~~L~l~~~~l~~ 303 (415)
...+.+|..++.+++|++|++++ +.+ |+.| ++ +| .+..+ ++|++|++++|.+.+
T Consensus 223 --~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 223 --NLSGEIPYEIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSG 298 (968)
T ss_pred --ccCCcCChhHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc-cCcCEEECcCCeecc
Confidence 34444555555555555555554 210 0000 11 34 44455 555555555555555
Q ss_pred CCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcC
Q 043839 304 DPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWC 373 (415)
Q Consensus 304 ~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~ 373 (415)
..|..++.+++|+.|++++ ...+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 5555555555555555544 223455555555555433345555555555666666555555555555555
Q ss_pred CCCCCeEEEecC
Q 043839 374 IKNLCKLELHWP 385 (415)
Q Consensus 374 l~~L~~L~l~~c 385 (415)
+++|+.|++++|
T Consensus 379 ~~~L~~L~l~~n 390 (968)
T PLN00113 379 SGNLFKLILFSN 390 (968)
T ss_pred cCCCCEEECcCC
Confidence 555666655554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2e-23 Score=199.53 Aligned_cols=272 Identities=19% Similarity=0.158 Sum_probs=181.0
Q ss_pred CceeEEEEEeCCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCce
Q 043839 100 ANVKRCFILKDLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKY 177 (415)
Q Consensus 100 ~~~r~l~l~~~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 177 (415)
.+..|+++. .+....+.+.. .+.||++.+.++.... ..+ |..+..+..|.+|||++|.+..+|..+...+++-+
T Consensus 55 qkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LKn--sGi-P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLKN--SGI-PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhcccccc--CCC-CchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 345566666 44444344444 7778888777776643 333 44455677788888888887777877777777777
Q ss_pred EecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccC
Q 043839 178 LKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLS 247 (415)
Q Consensus 178 L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~ 247 (415)
|+|++ +-+.+++.|-+||++ ++-...+|+.+.++.+||+|.++++. ......+..+++|+.|.+++.+
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq- 208 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ- 208 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-
Confidence 77777 334556667777777 55566677777777777777777665 2222333345556666666553
Q ss_pred cchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CCCCC----------------------CCCceEEEEEccccC
Q 043839 248 YHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SEYKF----------------------PPTLTQLSLSNTKLM 302 (415)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~l----------------------p~~L~~L~l~~~~l~ 302 (415)
.....+|.++..+.+|..++++. | .| +| .+..+ ..+|++|+++.|.++
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~-N------~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSE-N------NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT 281 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccc-c------CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc
Confidence 33445555555666666666555 3 22 33 33444 044445555555442
Q ss_pred CCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhh
Q 043839 303 EDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEEL 371 (415)
Q Consensus 303 ~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l 371 (415)
.+|..+.+++.|+.|.+.+ .+.+.+|+.+..++| +++-+|..+..|++|+.|.++.|... ++|++|
T Consensus 282 -~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 282 -VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred -cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhh
Confidence 4566666667776666655 445667888888887 88889999999999999999988776 699999
Q ss_pred cCCCCCCeEEEecCCh
Q 043839 372 WCIKNLCKLELHWPQP 387 (415)
Q Consensus 372 ~~l~~L~~L~l~~c~~ 387 (415)
.-++.|+.|++...|+
T Consensus 359 HlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhcCCcceeeccCCcC
Confidence 9999999999999885
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=8.4e-19 Score=166.93 Aligned_cols=259 Identities=19% Similarity=0.178 Sum_probs=156.4
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCc
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLM 192 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~ 192 (415)
.+..++|.+..+.. .++-..+|.++++|+.+.+..|.++.+|.......||+.|+|.+ +.++-++.|+
T Consensus 77 p~~t~~LdlsnNkl----~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKL----SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeecccccc----ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 78889999999998 56666889999999999999999999999888888999999988 4444555666
Q ss_pred EEEecCC------------------------CCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEeccc
Q 043839 193 HLNFGSI------------------------TMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDL 246 (415)
Q Consensus 193 ~L~l~~~------------------------~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 246 (415)
.||++.| .++..--..+.++.+|.+|.++.+. ..+|. .+.++++|+.|++..|+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 6666633 2222222223444455555555555 33333 34556666666666653
Q ss_pred CcchhcHHHhhhccCCCcEEEeecCccc-------------ccccc-----c--cc--CCCCC-----------------
Q 043839 247 SYHHSGVSKSLCELHKLECLKLVNEGKM-------------WQFSR-----M--IL--SEYKF----------------- 287 (415)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~i-------------l~~l~-----L--lp--~~~~l----------------- 287 (415)
....--..+..+++|+.|.+.. |+| ++.+. + +. |+..+
T Consensus 233 --irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 233 --IRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred --eeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 1111112333444444444433 222 11111 1 11 44444
Q ss_pred ------CCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEE---cCC
Q 043839 288 ------PPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTM---GAG 348 (415)
Q Consensus 288 ------p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~---~~~ 348 (415)
.++|+.|+|+.|.++.-.+..+..+..|++|.++. ..++++|++|+|++|...-.+.+ .+.
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 14444555555444444444444445555555544 34567888888888732222222 256
Q ss_pred CccCccEEEEecCcccCCCh-hhhcCCCCCCeEEEecCCh
Q 043839 349 SMPKLESLILNPCAYLRKLP-EELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 349 ~l~~L~~L~l~~c~~~~~lp-~~l~~l~~L~~L~l~~c~~ 387 (415)
++++|++|.+.+|.. +.+| ..+..+++|++|++.+.+-
T Consensus 390 gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cchhhhheeecCcee-eecchhhhccCcccceecCCCCcc
Confidence 789999999998865 4566 6788889999999887653
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=4.5e-18 Score=185.44 Aligned_cols=253 Identities=22% Similarity=0.206 Sum_probs=158.9
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc------cc-cCcccccCcc-CCceEecCc------cccc
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV------LD-LYPPGLENLF-HLKYLKLIT------PLLK 186 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~-~lp~~i~~l~-~L~~L~l~~------~~i~ 186 (415)
...++.+.+....... ..+....|..|++|+.|.+..+. +. .+|..+..++ +|+.|.+.+ +.-.
T Consensus 531 ~~~v~~i~l~~~~~~~--~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDE--LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF 608 (1153)
T ss_pred cceeeEEEeccCccce--eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC
Confidence 5566666655444322 34455668888888888875442 22 4566665554 477776665 2222
Q ss_pred ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCc
Q 043839 187 LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLE 264 (415)
Q Consensus 187 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 264 (415)
...+|+.|++. ++....+|.++..+++|+.|++.++. ..+| .++.+++|+.|++.+| .....+|.++..+++|+
T Consensus 609 ~~~~L~~L~L~-~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c--~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 609 RPENLVKLQMQ-GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDC--SSLVELPSSIQYLNKLE 684 (1153)
T ss_pred CccCCcEEECc-CccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCC--CCccccchhhhccCCCC
Confidence 34566666666 33344566666666666666666654 3333 3556666666666666 34555666666666666
Q ss_pred EEEeecCccccccccccc-CCCCC--------------------CCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-
Q 043839 265 CLKLVNEGKMWQFSRMIL-SEYKF--------------------PPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ- 322 (415)
Q Consensus 265 ~L~l~~~~~il~~l~Llp-~~~~l--------------------p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~- 322 (415)
.|++++++. ++. +| .+ .+ +.+|+.|+++++.+. .+|..+ .+++|+.|.+.+
T Consensus 685 ~L~L~~c~~-L~~---Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 685 DLDMSRCEN-LEI---LPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred EEeCCCCCC-cCc---cCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-ccccccccccccc
Confidence 666665220 000 33 21 23 144555555555542 233322 456666666643
Q ss_pred ----------------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 323 ----------------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 ----------------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
...+++|+.|++++|+.+..+|..++++++|+.|++++|..++.+|..+ .+++|+.|++++|.
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 1124689999999998889999999999999999999999998999776 68999999999986
Q ss_pred h
Q 043839 387 P 387 (415)
Q Consensus 387 ~ 387 (415)
.
T Consensus 837 ~ 837 (1153)
T PLN03210 837 R 837 (1153)
T ss_pred c
Confidence 4
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-19 Score=170.98 Aligned_cols=258 Identities=18% Similarity=0.119 Sum_probs=186.6
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCccccc-CccCCceEecCc--------ccccccccC
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLE-NLFHLKYLKLIT--------PLLKLMQKL 191 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~--------~~i~~l~~L 191 (415)
-.+++.|.+.++.+ ..+-...|..+.+|.+|.|+.|.++.+|.... +|++|+.|+|.. ..+..+.+|
T Consensus 172 ~~ni~~L~La~N~I----t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 172 KVNIKKLNLASNRI----TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL 247 (873)
T ss_pred CCCceEEeeccccc----cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence 45677777777777 44555667778888888888888887776544 488888888776 445667777
Q ss_pred cEEEecCCCCCCCCCCc-ccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839 192 MHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL 268 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (415)
+.|.+..|. ...+-++ +..+.++++|++..+. ..+ -.++-.+++|+.|+++.| .....-+.+...+++|+.|++
T Consensus 248 ~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 248 QNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh--hhheeecchhhhcccceeEec
Confidence 777777343 3344443 5667778888887777 333 344567788888888887 455555666777788888888
Q ss_pred ecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-------------CCCCCcccE
Q 043839 269 VNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-------------NSSFPLLKI 331 (415)
Q Consensus 269 ~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-------------~~~~~~L~~ 331 (415)
+. | ++ ++ .+..+ ..|+.|.|+.|.+....-..+..+.+|+.|++.. ..++++|+.
T Consensus 325 s~-N------~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 325 SS-N------RITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred cc-c------ccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 87 5 33 44 56667 7788888888876544444566677888888776 456889999
Q ss_pred EEeccCCCccceE-EcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEe------cCChhhHhhccc
Q 043839 332 LHLKSMLWLEEWT-MGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELH------WPQPHYRCNRKS 395 (415)
Q Consensus 332 L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~------~c~~~~~~~~~~ 395 (415)
|.+.+| +++.+| ..+.++++|+.|++.+|+.-.--|..+..+ .|++|.+. +|.-.|...|..
T Consensus 397 L~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 397 LRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred eeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence 999998 899998 458899999999999999876556778777 88877654 788888877654
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=2.6e-19 Score=171.61 Aligned_cols=258 Identities=21% Similarity=0.170 Sum_probs=166.4
Q ss_pred CCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-----
Q 043839 110 DLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT----- 182 (415)
Q Consensus 110 ~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~----- 182 (415)
.+.....|... .+++-.|.++.+.+ ..++...|-+++.|-+|||++|.+..+|+.+..+.+|+.|.|++
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~I----etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNI----ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCcc----ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH
Confidence 33333344444 55555555555555 44555555666666666666666666666666666666666665
Q ss_pred ---ccccccccCcEEEecCCCC-CCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhh
Q 043839 183 ---PLLKLMQKLMHLNFGSITM-PSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSL 257 (415)
Q Consensus 183 ---~~i~~l~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 257 (415)
..+-++++|+.|.+++.+- ...+|.++..+.||..++++.+. ..+|+.+-++++|+.|.+++| ....+....
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N---~iteL~~~~ 264 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN---KITELNMTE 264 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC---ceeeeeccH
Confidence 3334445555555552221 33455556666666666666555 555555556666666666665 333344444
Q ss_pred hccCCCcEEEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCC-CCchhhcCCCCCCeEeecc---------CC
Q 043839 258 CELHKLECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLME-DPMPTLEKLPLLEVLKLKQ---------NS 324 (415)
Q Consensus 258 ~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~---------~~ 324 (415)
+.+.+|++|+++. | .| +| .+..+ +.|++|.+.+|+++- .+|+.+|++.+|+++..++ ..
T Consensus 265 ~~W~~lEtLNlSr-N------QLt~LP~avcKL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 265 GEWENLETLNLSR-N------QLTVLPDAVCKL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC 336 (1255)
T ss_pred HHHhhhhhhcccc-c------hhccchHHHhhh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhh
Confidence 5555566666555 4 44 88 88899 999999999998754 6788999999999998887 45
Q ss_pred CCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEe
Q 043839 325 SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELH 383 (415)
Q Consensus 325 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~ 383 (415)
.+++|+.|.++.| .+-.+|..+.-++-|+.|++..|+.+-.-|.--..-++|+.-+|.
T Consensus 337 RC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 6789999999988 677899999999999999999999886544211122455544443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=6.9e-20 Score=167.20 Aligned_cols=262 Identities=22% Similarity=0.211 Sum_probs=162.1
Q ss_pred cCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccc--
Q 043839 116 PLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLL-- 185 (415)
Q Consensus 116 ~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i-- 185 (415)
.++.+ +.++..+.+.++.. ...++..+. ++.|+.||...|-++.+|+.++.+..|.-|+++. +++
T Consensus 152 lp~~~~~~~~l~~l~~~~n~l----~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g 226 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGNKL----KALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPG 226 (565)
T ss_pred CchHHHHHHHHHHhhccccch----hhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCc
Confidence 44444 55555555555554 333444444 7778888887777778888888777777777766 333
Q ss_pred ----------------------cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEE
Q 043839 186 ----------------------KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRI 242 (415)
Q Consensus 186 ----------------------~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l 242 (415)
.++.++..||+. .+...++|+++.-+.+|.+|+++++. ..+|..++++ .|+.|.+
T Consensus 227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR-dNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR-DNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred cHHHHHHHhcccHHHhhHHHHhcccccceeeecc-ccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhh
Confidence 345555566665 33445566666666666666666666 5666666666 5666666
Q ss_pred ecccC---------cchhcHH------------------------------HhhhccCCCcEEEeec------Cccccc-
Q 043839 243 SGDLS---------YHHSGVS------------------------------KSLCELHKLECLKLVN------EGKMWQ- 276 (415)
Q Consensus 243 ~~~~~---------~~~~~~~------------------------------~~l~~l~~L~~L~l~~------~~~il~- 276 (415)
.+|.- ....++. .....+.+.+.|+++. ..+|.+
T Consensus 305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea 384 (565)
T KOG0472|consen 305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA 384 (565)
T ss_pred cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence 65530 0000000 0011111223333322 000100
Q ss_pred -----------------cc-------------------cc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCe
Q 043839 277 -----------------FS-------------------RM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEV 317 (415)
Q Consensus 277 -----------------~l-------------------~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 317 (415)
.+ .+ +| .+..+ ++|..|++++|.+ .++|..++.+-.|+.
T Consensus 385 ~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l-~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 385 AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL-QKLTFLDLSNNLL-NDLPEEMGSLVRLQT 462 (565)
T ss_pred hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh-hcceeeecccchh-hhcchhhhhhhhhhe
Confidence 00 11 44 66788 8999999999886 577888888888999
Q ss_pred Eeecc--CCCCC-------cccEEEeccCCCccceEEc-CCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 318 LKLKQ--NSSFP-------LLKILHLKSMLWLEEWTMG-AGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 318 L~l~~--~~~~~-------~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
|+++. +...| .|+.+- +.+..+++++.. +++|.+|.+|++.+|... .+|+.++++++|++|+++|.|-
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtll-as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLL-ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHH-hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 99986 11112 233343 444478888766 899999999999998765 7999999999999999999986
Q ss_pred h
Q 043839 388 H 388 (415)
Q Consensus 388 ~ 388 (415)
.
T Consensus 541 r 541 (565)
T KOG0472|consen 541 R 541 (565)
T ss_pred C
Confidence 4
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=4.4e-19 Score=162.00 Aligned_cols=230 Identities=20% Similarity=0.175 Sum_probs=143.2
Q ss_pred HhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccce
Q 043839 145 FCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIF 217 (415)
Q Consensus 145 ~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 217 (415)
.+.++..|.+|++.++.+.++|.+|+.+..++.++.++ +.++++.+|+.|+.+ .+-...+|++++.+..|..
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s-~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS-SNELKELPDSIGRLLDLED 141 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc-ccceeecCchHHHHhhhhh
Confidence 34455555555555555555555555555555555555 445555555555555 2223445555555555555
Q ss_pred eccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CCCCCCCCceE
Q 043839 218 ISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQ 293 (415)
Q Consensus 218 L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~ 293 (415)
++..++. ...|.+++++.+|..+++.++ ...++|+....++.|++++... | -| +| .++.+ .+|..
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~-N------~L~tlP~~lg~l-~~L~~ 210 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNS-N------LLETLPPELGGL-ESLEL 210 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccch-h------hhhcCChhhcch-hhhHH
Confidence 5555555 555555555555555555554 3333343333355555555544 1 11 55 55555 55555
Q ss_pred EEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcc
Q 043839 294 LSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAY 363 (415)
Q Consensus 294 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 363 (415)
|++..|++. ..| .|..|..|+.++++. ...++++..|++.+| ++++.|+++.-+.+|++|++++|..
T Consensus 211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred HHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCcc
Confidence 555555542 222 455555555555554 235677788888998 8999999999999999999999977
Q ss_pred cCCChhhhcCCCCCCeEEEecCChhhHh
Q 043839 364 LRKLPEELWCIKNLCKLELHWPQPHYRC 391 (415)
Q Consensus 364 ~~~lp~~l~~l~~L~~L~l~~c~~~~~~ 391 (415)
+ .+|..++++ .|+.|.+.|.|-...+
T Consensus 288 s-~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 288 S-SLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred c-cCCcccccc-eeeehhhcCCchHHHH
Confidence 6 689999999 9999999999976554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-17 Score=167.09 Aligned_cols=271 Identities=21% Similarity=0.206 Sum_probs=158.2
Q ss_pred eeEEEEEeCCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEe
Q 043839 102 VKRCFILKDLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLK 179 (415)
Q Consensus 102 ~r~l~l~~~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 179 (415)
.+++.+. ++....++..+ .++|+.|.+..+.+.. .+....++++|++|.|.++.+..+|.++..+++|++|+
T Consensus 47 L~~l~ls-nn~~~~fp~~it~l~~L~~ln~s~n~i~~-----vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 47 LKSLDLS-NNQISSFPIQITLLSHLRQLNLSRNYIRS-----VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eEEeecc-ccccccCCchhhhHHHHhhcccchhhHhh-----CchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 5556666 55555555555 7777777777776532 34566777777777777777777777777777777777
Q ss_pred cCc--------------------------------------------------ccccccccCcEEEecCCCCC-------
Q 043839 180 LIT--------------------------------------------------PLLKLMQKLMHLNFGSITMP------- 202 (415)
Q Consensus 180 l~~--------------------------------------------------~~i~~l~~L~~L~l~~~~~~------- 202 (415)
+++ .++..++. .|++.+|.+.
T Consensus 121 lS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~ 198 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNL 198 (1081)
T ss_pred cchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhc
Confidence 777 11111111 2333333111
Q ss_pred ----------------------------------CCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccC
Q 043839 203 ----------------------------------SPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLS 247 (415)
Q Consensus 203 ----------------------------------~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 247 (415)
...+ ...-.+|++++++++. ..+|.+++.+.+|+.+.+..|.-
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence 0000 1122467777777777 77777777777777777777620
Q ss_pred --------------------cchhcHHHhhhccCCCcEEEeecCccc--------------cccc---------------
Q 043839 248 --------------------YHHSGVSKSLCELHKLECLKLVNEGKM--------------WQFS--------------- 278 (415)
Q Consensus 248 --------------------~~~~~~~~~l~~l~~L~~L~l~~~~~i--------------l~~l--------------- 278 (415)
...+.+|.....+++|++|++.. |.+ ++.+
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 01222334444556677777766 332 0100
Q ss_pred --------------cc----ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccE
Q 043839 279 --------------RM----ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKI 331 (415)
Q Consensus 279 --------------~L----lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~ 331 (415)
.| +|.+..+ .+|+.|+|++|.+..-+...+.+++.|+.|+++| ...+++|++
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 11 3434445 6666666666665433444556666666666666 344556666
Q ss_pred EEeccCCCccceEEcCCCccCccEEEEecCcccC-CChhhhcCCCCCCeEEEecCCh
Q 043839 332 LHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLR-KLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 332 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~-~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
|...+| .+..+| ++..++.|+.+|++.|.... .+|..... ++|++||++|.+.
T Consensus 435 L~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 666555 555666 66777888888888777554 34443332 7888888888773
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=4.5e-13 Score=137.46 Aligned_cols=242 Identities=15% Similarity=0.034 Sum_probs=156.9
Q ss_pred eeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecC
Q 043839 102 VKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLI 181 (415)
Q Consensus 102 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 181 (415)
-..+.+. ......+|..+.++++.|.+.++... .++ ...++|++|++++|.++.+|.. .++|+.|+++
T Consensus 203 ~~~LdLs-~~~LtsLP~~l~~~L~~L~L~~N~Lt----~LP----~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNLT----SLP----ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcC-CCCCCcCCcchhcCCCEEEccCCcCC----CCC----CCCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 4456666 55555566655668999999888763 222 2357899999999999888853 3578888888
Q ss_pred cccccc----cccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHh
Q 043839 182 TPLLKL----MQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKS 256 (415)
Q Consensus 182 ~~~i~~----l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 256 (415)
+..+.. ..+|+.|++++|. ...+|.. .++|+.|++++|. ..+|.. ..+|+.|++++| ....+|.
T Consensus 271 ~N~L~~Lp~lp~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N---~L~~LP~- 339 (788)
T PRK15387 271 SNPLTHLPALPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN---QLTSLPT- 339 (788)
T ss_pred CCchhhhhhchhhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCC---cccccccccccC---ccccccc-
Confidence 733333 2568888888554 4456653 4678888888887 555542 235677777776 2333442
Q ss_pred hhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc------CCCCCc
Q 043839 257 LCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------NSSFPL 328 (415)
Q Consensus 257 l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------~~~~~~ 328 (415)
...+|+.|++++ | +| +| .+|++|+.|++++|.+. .+|.. ..+|+.|++++ ....++
T Consensus 340 --lp~~Lq~LdLS~-N------~Ls~LP---~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~ 403 (788)
T PRK15387 340 --LPSGLQELSVSD-N------QLASLP---TLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLPSE 403 (788)
T ss_pred --cccccceEecCC-C------ccCCCC---CCCcccceehhhccccc-cCccc---ccccceEEecCCcccCCCCcccC
Confidence 124688888877 5 22 34 22367777777777764 33332 24677777766 222346
Q ss_pred ccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 329 LKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 329 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
|+.|++++| .+..+|.. ..+|+.|++++|... .+|..+.++++|+.|++++++-
T Consensus 404 L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 404 LKELMVSGN-RLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CCEEEccCC-cCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 777888777 46666642 346677777777654 6777777777888888877663
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=3.1e-14 Score=134.70 Aligned_cols=174 Identities=23% Similarity=0.191 Sum_probs=92.0
Q ss_pred HHHhccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc--------------ccccccccCcEEEecCCCCCC
Q 043839 143 ENFCKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT--------------PLLKLMQKLMHLNFGSITMPS 203 (415)
Q Consensus 143 ~~~~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~--------------~~i~~l~~L~~L~l~~~~~~~ 203 (415)
...+..+.+|++|+++++.++ .++..+...++|+++++++ ..+.++++|+.|++++|.+..
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345566666777777777663 3444444555566666655 124455677777777555544
Q ss_pred CCCCcccCccc---cceeccccCC-C-----CCccccCCC-CCCCeEEEecccCcch----hcHHHhhhccCCCcEEEee
Q 043839 204 PPNNYSSSLKD---LIFISAVHPS-S-----CTPDILGRL-PNVQTLRISGDLSYHH----SGVSKSLCELHKLECLKLV 269 (415)
Q Consensus 204 ~~p~~i~~l~~---L~~L~l~~~~-~-----~~~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~ 269 (415)
..+..+..+.+ |++|++.++. . .+...+..+ ++|+.|++++|. .. ..++..+..+++|+.|+++
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR--LEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc--CCchHHHHHHHHHHhCCCcCEEECc
Confidence 44444444444 7777777665 1 223334555 677777777763 22 2334455556667777776
Q ss_pred cCccccccccc--cc-CCCCCCCCceEEEEEccccCCCC----chhhcCCCCCCeEeec
Q 043839 270 NEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDP----MPTLEKLPLLEVLKLK 321 (415)
Q Consensus 270 ~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~ 321 (415)
+ +.+-.. .+ ++ .+..+ ++|++|++++|.+.+.. ...+..+++|++|+++
T Consensus 174 ~-n~l~~~-~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 174 N-NGIGDA-GIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred C-CCCchH-HHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 6 311000 00 12 23344 57777777777654322 2233344445555444
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=6.8e-13 Score=136.78 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=108.1
Q ss_pred eeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecC
Q 043839 102 VKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLI 181 (415)
Q Consensus 102 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 181 (415)
...+.+. +.....+|..+.++++.|.+.++.. ..++...+ ++|++|++++|.++.+|..+. .+|+.|+++
T Consensus 180 ~~~L~L~-~~~LtsLP~~Ip~~L~~L~Ls~N~L----tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLK-ILGLTTIPACIPEQITTLILDNNEL----KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeC-CCCcCcCCcccccCCcEEEecCCCC----CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3445555 4444444443445666666666655 22222221 356666666666666665442 245555555
Q ss_pred ccccccc-----ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHH
Q 043839 182 TPLLKLM-----QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSK 255 (415)
Q Consensus 182 ~~~i~~l-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 255 (415)
+..+..+ .+|+.|++++| ....+|..+. .+|++|++++|. ..+|..+. ++|+.|++++| ....+|.
T Consensus 250 ~N~L~~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N---~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERLPSALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN---SLTALPE 321 (754)
T ss_pred CCccCcCChhHhCCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC---ccccCCc
Confidence 4222221 23455555422 2223444332 244555544444 33333221 23444444444 1112222
Q ss_pred hhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-------CCCCCc
Q 043839 256 SLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-------NSSFPL 328 (415)
Q Consensus 256 ~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-------~~~~~~ 328 (415)
.+ |++|+.|++++|.++. +|..+ .++|+.|++++ ....++
T Consensus 322 ~l------------------------------~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~lp~~ 368 (754)
T PRK15370 322 TL------------------------------PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETLPPT 368 (754)
T ss_pred cc------------------------------cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhhcCC
Confidence 11 1444445554444432 22222 13444444443 011245
Q ss_pred ccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhc----CCCCCCeEEEecCCh
Q 043839 329 LKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELW----CIKNLCKLELHWPQP 387 (415)
Q Consensus 329 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~----~l~~L~~L~l~~c~~ 387 (415)
|++|++++| .+..+|..+. ++|+.|++++|... .+|..+. .++.+..|++.+.|-
T Consensus 369 L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCEEECCCC-cCCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 666777776 5556665432 35777777777654 4554332 346667777777663
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=3.2e-15 Score=121.97 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCC
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSIT 200 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~ 200 (415)
++++..|.++++... ..+.-+..+.+|++|++.+|+++.+|.+|+.++.||.|++.. +
T Consensus 32 ~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-----------------n 89 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-----------------N 89 (264)
T ss_pred hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-----------------h
Confidence 444555555544431 123334455555555555555555555555444444444432 2
Q ss_pred CCCCCCCcccCccccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccc
Q 043839 201 MPSPPNNYSSSLKDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQF 277 (415)
Q Consensus 201 ~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~ 277 (415)
-...+|.++|.++.|+.|++.++. ..+|..+-.++.|+.|+++++ ..+.+|..++++++|+.|.+.. |+.+.
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrd-ndll~- 164 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRD-NDLLS- 164 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeecc-Cchhh-
Confidence 233445555555555555555544 344444444555555555554 3344455555555555554444 32222
Q ss_pred ccccc-CCCCCCCCceEEEEEcccc
Q 043839 278 SRMIL-SEYKFPPTLTQLSLSNTKL 301 (415)
Q Consensus 278 l~Llp-~~~~lp~~L~~L~l~~~~l 301 (415)
+| .++.+ ..|+.|.+.+|++
T Consensus 165 ---lpkeig~l-t~lrelhiqgnrl 185 (264)
T KOG0617|consen 165 ---LPKEIGDL-TRLRELHIQGNRL 185 (264)
T ss_pred ---CcHHHHHH-HHHHHHhccccee
Confidence 45 55555 5555555555554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=2.5e-14 Score=143.44 Aligned_cols=267 Identities=20% Similarity=0.181 Sum_probs=180.9
Q ss_pred CCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCce
Q 043839 99 LANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKY 177 (415)
Q Consensus 99 ~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 177 (415)
....+++... .+......... ..++.++.+..+.. ..+ +.++..+.+|..+...+|.++.+|..+.....|++
T Consensus 218 g~~l~~L~a~-~n~l~~~~~~p~p~nl~~~dis~n~l----~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 218 GPSLTALYAD-HNPLTTLDVHPVPLNLQYLDISHNNL----SNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVS 291 (1081)
T ss_pred Ccchheeeec-cCcceeeccccccccceeeecchhhh----hcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence 3445555555 44333333344 66777777777765 333 47888888888888888888888888888888888
Q ss_pred EecCc-------ccccccccCcEEEecCCCCCCCCCCc-ccCccc-cceeccccCC-CCCccc-cCCCCCCCeEEEeccc
Q 043839 178 LKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKD-LIFISAVHPS-SCTPDI-LGRLPNVQTLRISGDL 246 (415)
Q Consensus 178 L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~-L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~ 246 (415)
|.... +..+.++.|++|++..| ....+|+. +..+.. |..|+.+.+. ...|.. =..++.|+.|++.+|
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN- 369 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN- 369 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-
Confidence 77766 55566888888888844 44455553 222222 5555555554 333321 123566888888888
Q ss_pred CcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839 247 SYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 322 (415)
...+...+.+...++|+.|++++ | +| +| .+.++ +.|+.|+|++|+++ .+|..+.+++.|++|...+
T Consensus 370 -~Ltd~c~p~l~~~~hLKVLhLsy-N------rL~~fpas~~~kl-e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 370 -HLTDSCFPVLVNFKHLKVLHLSY-N------RLNSFPASKLRKL-EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred -cccccchhhhccccceeeeeecc-c------ccccCCHHHHhch-HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 56677777788889999999998 6 55 78 77888 89999999999974 6778888999999988876
Q ss_pred --------CCCCCcccEEEeccCCCccceEEcCC-CccCccEEEEecCcccCCChhhhcCCCCCCeEEEec
Q 043839 323 --------NSSFPLLKILHLKSMLWLEEWTMGAG-SMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHW 384 (415)
Q Consensus 323 --------~~~~~~L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~ 384 (415)
...+++|+.++++.| ++..+..... .-|+|++|+++||..+.---..+..+..+...++.-
T Consensus 440 N~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 440 NQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred CceeechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 455678999999987 6664432222 228999999999985432123344455555555543
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=3.3e-12 Score=131.17 Aligned_cols=232 Identities=16% Similarity=0.055 Sum_probs=165.1
Q ss_pred CceeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEe
Q 043839 100 ANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLK 179 (415)
Q Consensus 100 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 179 (415)
..++.+.+. ++....++. ..++|++|.+.++... .+ +. ..++|+.|++++|.++.+|... ..|+.|+
T Consensus 222 ~~L~~L~L~-~N~Lt~LP~-lp~~Lk~LdLs~N~Lt----sL-P~---lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLT----SL-PV---LPPGLLELSIFSNPLTHLPALP---SGLCKLW 288 (788)
T ss_pred cCCCEEEcc-CCcCCCCCC-CCCCCcEEEecCCccC----cc-cC---cccccceeeccCCchhhhhhch---hhcCEEE
Confidence 356888888 666654442 2789999999998773 22 21 2468999999999988777633 5688888
Q ss_pred cCccccccc----ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHH
Q 043839 180 LITPLLKLM----QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVS 254 (415)
Q Consensus 180 l~~~~i~~l----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 254 (415)
+++..+..+ ++|+.|++++|.+ ..+|... .+|+.|.+.+|. ..+|.. ..+|+.|++++| ....+|
T Consensus 289 Ls~N~Lt~LP~~p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N---~Ls~LP 358 (788)
T PRK15387 289 IFGNQLTSLPVLPPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDN---QLASLP 358 (788)
T ss_pred CcCCccccccccccccceeECCCCcc-ccCCCCc---ccccccccccCcccccccc---ccccceEecCCC---ccCCCC
Confidence 888444433 6899999996544 4566533 357778888887 666642 257999999998 333444
Q ss_pred HhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--CC----CC
Q 043839 255 KSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--NS----SF 326 (415)
Q Consensus 255 ~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--~~----~~ 326 (415)
.. ..+|+.|+++. | ++ +| ..|.+|+.|++++|.++. +|.. .++|+.|++++ .. .+
T Consensus 359 ~l---p~~L~~L~Ls~-N------~L~~LP---~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l~ 421 (788)
T PRK15387 359 TL---PSELYKLWAYN-N------RLTSLP---ALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPMLP 421 (788)
T ss_pred CC---Ccccceehhhc-c------ccccCc---ccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcch
Confidence 32 24677777766 4 22 44 223689999999998864 4432 36788999987 22 23
Q ss_pred CcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhc
Q 043839 327 PLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELW 372 (415)
Q Consensus 327 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~ 372 (415)
.+|+.|++++| .++.+|..++.+++|+.|++++|+..+..|..+.
T Consensus 422 ~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 422 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred hhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 46899999998 7889999999999999999999999887776653
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=7.7e-15 Score=119.74 Aligned_cols=164 Identities=22% Similarity=0.277 Sum_probs=103.9
Q ss_pred hccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839 146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS- 224 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~- 224 (415)
+.++.+.+.|.+++|+++.+|..|..+.+|+.|++. |+...++|.++++++.|+.|++.-+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-----------------nnqie~lp~~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-----------------NNQIEELPTSISSLPKLRILNVGMNRL 91 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-----------------cchhhhcChhhhhchhhhheecchhhh
Confidence 445666666777777776766655555555444443 55556667777777777777766665
Q ss_pred CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCC
Q 043839 225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~ 303 (415)
...|.+++.++.|+.|+++.+. ..... +| .|..+ ..|+.|++++|.+ .
T Consensus 92 ~~lprgfgs~p~levldltynn-l~e~~----------------------------lpgnff~m-~tlralyl~dndf-e 140 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNN-LNENS----------------------------LPGNFFYM-TTLRALYLGDNDF-E 140 (264)
T ss_pred hcCccccCCCchhhhhhccccc-ccccc----------------------------CCcchhHH-HHHHHHHhcCCCc-c
Confidence 6666677777777777766652 11112 45 44445 6667777777765 4
Q ss_pred CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcC
Q 043839 304 DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWC 373 (415)
Q Consensus 304 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~ 373 (415)
.+|+.++++++|+.|.+ ..| .+-++|.++|.++.|+.|.|.+|... -+|+.+++
T Consensus 141 ~lp~dvg~lt~lqil~l--------------rdn-dll~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSL--------------RDN-DLLSLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred cCChhhhhhcceeEEee--------------ccC-chhhCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 56666666665554444 565 56678888888888888888888665 46655544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=2.3e-13 Score=128.70 Aligned_cols=228 Identities=21% Similarity=0.134 Sum_probs=157.6
Q ss_pred EEEcCCcccc--cCcccccCccCCceEecCc------------ccccccccCcEEEecCCCCCC------CCCCcccCcc
Q 043839 154 VLNLGSAVLD--LYPPGLENLFHLKYLKLIT------------PLLKLMQKLMHLNFGSITMPS------PPNNYSSSLK 213 (415)
Q Consensus 154 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~------------~~i~~l~~L~~L~l~~~~~~~------~~p~~i~~l~ 213 (415)
.|+|+++.++ ..+..+..+.+|++|++++ ..+...+++++++++++.... .++..++.++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777765 5555566777899999998 334566779999998665441 2334567788
Q ss_pred ccceeccccCC--CCCccccCCCC---CCCeEEEecccCcch----hcHHHhhhcc-CCCcEEEeecCccccccccc--c
Q 043839 214 DLIFISAVHPS--SCTPDILGRLP---NVQTLRISGDLSYHH----SGVSKSLCEL-HKLECLKLVNEGKMWQFSRM--I 281 (415)
Q Consensus 214 ~L~~L~l~~~~--~~~~~~l~~l~---~L~~L~l~~~~~~~~----~~~~~~l~~l-~~L~~L~l~~~~~il~~l~L--l 281 (415)
+|+.|++.++. ...+..+..+. +|+.|++++|. .. ..+...+..+ ++|+.|++++ +.+-.. .. +
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~--~~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~-~~~~~ 157 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG--LGDRGLRLLAKGLKDLPPALEKLVLGR-NRLEGA-SCEAL 157 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc--cchHHHHHHHHHHHhCCCCceEEEcCC-CcCCch-HHHHH
Confidence 99999999888 33444444444 49999999983 33 2344566677 8999999998 311000 00 3
Q ss_pred c-CCCCCCCCceEEEEEccccCCCC----chhhcCCCCCCeEeecc--------------CCCCCcccEEEeccCCCccc
Q 043839 282 L-SEYKFPPTLTQLSLSNTKLMEDP----MPTLEKLPLLEVLKLKQ--------------NSSFPLLKILHLKSMLWLEE 342 (415)
Q Consensus 282 p-~~~~lp~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~--------------~~~~~~L~~L~l~~~~~l~~ 342 (415)
+ .+..+ ++|++|++++|.+++.. +..+..+++|+.|++++ ...+++|++|++++|. ++.
T Consensus 158 ~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~ 235 (319)
T cd00116 158 AKALRAN-RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTD 235 (319)
T ss_pred HHHHHhC-CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-Cch
Confidence 3 45566 78999999999887532 33455667999999987 3456789999999984 442
Q ss_pred e-EEc-CC----CccCccEEEEecCcccC----CChhhhcCCCCCCeEEEecCCh
Q 043839 343 W-TMG-AG----SMPKLESLILNPCAYLR----KLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 343 l-~~~-~~----~l~~L~~L~l~~c~~~~----~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
. ... .. ..+.|+.|++++|.... .++..+..+++|+++++++++-
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 1 111 11 34799999999998752 3455677789999999998764
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=8.6e-12 Score=128.68 Aligned_cols=207 Identities=19% Similarity=0.176 Sum_probs=147.0
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCccccccc-----ccCcEEEecCCCCCCCCCCcccCccccceeccccCC
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLM-----QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS 224 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 224 (415)
.+..+|+++++.++.+|..+. .+|+.|++++..+..+ .+|++|++++|. ...+|..+. .+|+.|++++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCc-cccCChhhh--ccccEEECcCCc
Confidence 356788888888888887664 4788888887333322 478999998554 456776554 478999999988
Q ss_pred -CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEcccc
Q 043839 225 -SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKL 301 (415)
Q Consensus 225 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l 301 (415)
..+|..+. .+|+.|++++| ....+|..+. ++|+.|++++ | +| +| ..+|++|+.|++++|.+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N---~L~~LP~~l~--~sL~~L~Ls~-N------~Lt~LP--~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHN---KISCLPENLP--EELRYLSVYD-N------SIRTLP--AHLPSGITHLNVQSNSL 316 (754)
T ss_pred cCcCChhHh--CCCCEEECcCC---ccCccccccC--CCCcEEECCC-C------ccccCc--ccchhhHHHHHhcCCcc
Confidence 77777654 57999999887 3335665543 5899999988 5 23 44 12336799999999987
Q ss_pred CCCCchhhcCCCCCCeEeecc--C-----CCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839 302 MEDPMPTLEKLPLLEVLKLKQ--N-----SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCI 374 (415)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~l~~--~-----~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l 374 (415)
+. +|..+ .++|+.|++++ . .-.++|+.|++++| .+..+|..+ .++|+.|++++|... .+|..+.
T Consensus 317 t~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 317 TA-LPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred cc-CCccc--cccceeccccCCccccCChhhcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence 53 44333 36888888877 1 12358999999998 677777644 368999999999765 6787664
Q ss_pred CCCCeEEEecCC
Q 043839 375 KNLCKLELHWPQ 386 (415)
Q Consensus 375 ~~L~~L~l~~c~ 386 (415)
++|+.|++++|.
T Consensus 388 ~sL~~LdLs~N~ 399 (754)
T PRK15370 388 AALQIMQASRNN 399 (754)
T ss_pred HHHHHHhhccCC
Confidence 368888888765
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=1.2e-12 Score=119.99 Aligned_cols=243 Identities=16% Similarity=0.097 Sum_probs=128.0
Q ss_pred cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEecCc---------ccc
Q 043839 116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLIT---------PLL 185 (415)
Q Consensus 116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~---------~~i 185 (415)
+|....+....+.+..+.+ ..+++..|+.++.||.|||++|.|+ --|+.+..+..|..|-+-+ ..+
T Consensus 61 VP~~LP~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcccCCCcceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 5555566777888888888 7788899999999999999999998 5566666666555543332 333
Q ss_pred cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccC---cchhc-------H
Q 043839 186 KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLS---YHHSG-------V 253 (415)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~---~~~~~-------~ 253 (415)
++|..|+.|.+.-|.........+..+++|..|.+..+. ..++. .+..+..++++.+..+.- -.... .
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 444444444443222222222334444444444444444 33333 233444444444333310 00000 0
Q ss_pred HHhhhccCCCcEEEeec-------Cccc---cccc--cc---------cc--CCCCCCCCceEEEEEccccCCCCchhhc
Q 043839 254 SKSLCELHKLECLKLVN-------EGKM---WQFS--RM---------IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLE 310 (415)
Q Consensus 254 ~~~l~~l~~L~~L~l~~-------~~~i---l~~l--~L---------lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~ 310 (415)
+...+...-.....+.. .+.+ ++++ ++ .| -|..+ ++|++|++++|+++..-..++.
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhc
Confidence 00000000000000000 0000 1111 00 34 45667 7888888888887766667777
Q ss_pred CCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcc
Q 043839 311 KLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAY 363 (415)
Q Consensus 311 ~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 363 (415)
....++.|.+.. ..++..|+.|++.+|....--|..+..+.+|.+|.+-.|+.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 777777777765 44556677777777633333445566666666666666653
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=6.6e-12 Score=113.67 Aligned_cols=219 Identities=18% Similarity=0.148 Sum_probs=141.3
Q ss_pred HHHhccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc------------------ccccccccCcEEEecCC
Q 043839 143 ENFCKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT------------------PLLKLMQKLMHLNFGSI 199 (415)
Q Consensus 143 ~~~~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~------------------~~i~~l~~L~~L~l~~~ 199 (415)
......+..++.++|+||.+. .+...+.+.++|+.-++++ +.+..+++|++|+|++|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344566677777777777765 3334455566777777776 55666789999999988
Q ss_pred CCCCCCCCc----ccCccccceeccccCC------CC---------CccccCCCCCCCeEEEeccc--CcchhcHHHhhh
Q 043839 200 TMPSPPNNY----SSSLKDLIFISAVHPS------SC---------TPDILGRLPNVQTLRISGDL--SYHHSGVSKSLC 258 (415)
Q Consensus 200 ~~~~~~p~~----i~~l~~L~~L~l~~~~------~~---------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~ 258 (415)
.+....+.. +.+++.|++|.+.+|+ .. ...-.++-++||++....|+ +.....+...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 887766655 5678899999999998 11 22234566889999998885 223344566777
Q ss_pred ccCCCcEEEeecCcccc-ccccccc-CCCCCCCCceEEEEEccccCCCCc----hhhcCCCCCCeEeecc----------
Q 043839 259 ELHKLECLKLVNEGKMW-QFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPM----PTLEKLPLLEVLKLKQ---------- 322 (415)
Q Consensus 259 ~l~~L~~L~l~~~~~il-~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~---------- 322 (415)
..+.|+.+.+.. |.|. +...++- .+..+ ++|+.|++.+|.++.... ..+..+++|+.|++++
T Consensus 183 ~~~~leevr~~q-N~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 183 SHPTLEEVRLSQ-NGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred hccccceEEEec-ccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 888999998887 4220 0000011 34567 899999999998765433 3444566777777765
Q ss_pred -----CCCCCcccEEEeccCCCcc----ceEEcCCCccCccEEEEecCcc
Q 043839 323 -----NSSFPLLKILHLKSMLWLE----EWTMGAGSMPKLESLILNPCAY 363 (415)
Q Consensus 323 -----~~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~ 363 (415)
...+|+|+.|.+.+|.... .+...+...|.|+.|++++|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3346677777777663222 1223344566677777777665
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=1.4e-11 Score=113.13 Aligned_cols=209 Identities=16% Similarity=0.095 Sum_probs=127.9
Q ss_pred CCCceeEEEEEeCCCCCccCCCC---CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCC-cccccCccc-ccCc
Q 043839 98 SLANVKRCFILKDLTEFFPLEHS---DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGS-AVLDLYPPG-LENL 172 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~~~---~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~lp~~-i~~l 172 (415)
.+...-.+.+. .+.+..++... .++||.|.+..+.+ ..+-++.|..++.|..|-+-+ |+|+.+|+. +++|
T Consensus 65 LP~~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N~I----s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKNNI----SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CCCcceEEEec-cCCcccCChhhccchhhhceecccccch----hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 34555566666 66666666655 77777777777777 556667777777766655554 667766654 4456
Q ss_pred cCCceEecCc--------ccccccccCcEEEecCCCCCCCCCC-cccCccccceeccccCC-------------------
Q 043839 173 FHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVHPS------------------- 224 (415)
Q Consensus 173 ~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~------------------- 224 (415)
..|+.|.+.- ..+..+++|..|.+.+|.+ ..++. .+..+.+++++.+..+.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 6666655544 4455555555555553321 11221 12222222222221110
Q ss_pred --------------------------------------------CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhc
Q 043839 225 --------------------------------------------SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCE 259 (415)
Q Consensus 225 --------------------------------------------~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (415)
...| .-++++++|++|++++| .....-+.++..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--KITRIEDGAFEG 296 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC--ccchhhhhhhcc
Confidence 1111 12566778888888777 455555666777
Q ss_pred cCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839 260 LHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 260 l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 322 (415)
..+++.|.+.. | ++ +. .+..+ .+|+.|+|++|+++...|..+..+..|.+|++-+
T Consensus 297 ~a~l~eL~L~~-N------~l~~v~~~~f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 297 AAELQELYLTR-N------KLEFVSSGMFQGL-SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hhhhhhhhcCc-c------hHHHHHHHhhhcc-ccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 77777777776 4 33 33 56678 8899999999998888888888888888888866
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=4.9e-10 Score=117.61 Aligned_cols=232 Identities=20% Similarity=0.133 Sum_probs=153.9
Q ss_pred cCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc--cccCccc-ccCccCCceEecCc--------c
Q 043839 116 PLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV--LDLYPPG-LENLFHLKYLKLIT--------P 183 (415)
Q Consensus 116 ~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~lp~~-i~~l~~L~~L~l~~--------~ 183 (415)
.+... ....|.+.+..+.... + ..-..++.|++|-+.++. +..++.. +..++.|++|||++ .
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~----~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEH----I--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccccchhheeEEEEeccchhh----c--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 44444 7788888888877632 1 122344579999999886 5566654 55799999999995 7
Q ss_pred cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccC
Q 043839 184 LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH 261 (415)
Q Consensus 184 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 261 (415)
.|+++-+||+|+++ .+....+|.++++++.|++|++..+. ..++.....+++||+|.+..............+..+.
T Consensus 590 ~I~~Li~LryL~L~-~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLS-DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhccccc-CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 78999999999999 66677999999999999999999988 4555666679999999998763223344455667777
Q ss_pred CCcEEEeecCc-cccccc-------------c-----c--cc-CCCCCCCCceEEEEEccccCCCCchhhcC------CC
Q 043839 262 KLECLKLVNEG-KMWQFS-------------R-----M--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEK------LP 313 (415)
Q Consensus 262 ~L~~L~l~~~~-~il~~l-------------~-----L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~------l~ 313 (415)
+|+.+.+...+ .+++.+ . . .+ .+..+ .+|+.|.+.+|.+.......... ++
T Consensus 669 ~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 669 HLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred chhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 77777765511 111111 1 0 22 55667 88999999998764322211111 22
Q ss_pred CCCeEeecc---------CCCCCcccEEEeccCCCccceEEcCCCccCccE
Q 043839 314 LLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLES 355 (415)
Q Consensus 314 ~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 355 (415)
++..+.+.+ ....|+|+.|.+..|+.++++......+..++.
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred HHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 222222222 234578888888888777765544444444443
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.6e-11 Score=109.38 Aligned_cols=228 Identities=20% Similarity=0.185 Sum_probs=122.7
Q ss_pred hccCCcccEEEcCCcccccCc--ccccCccCCceEecCc----------ccccccccCcEEEecCCCCCCCCCCc-ccCc
Q 043839 146 CKKFKHLRVLNLGSAVLDLYP--PGLENLFHLKYLKLIT----------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSL 212 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~----------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l 212 (415)
=++++.|+...|.++.+...+ .....|++++.|||+. .-+..+++|+.|+++.|.+....-.. -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 346677777777777766444 2455677777777776 33345666666666644432211111 1234
Q ss_pred cccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc---CCCC
Q 043839 213 KDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL---SEYK 286 (415)
Q Consensus 213 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp---~~~~ 286 (415)
+.|+.|.+..|+ ..+...+..+|+|+.|++..|. .......+-..++.|+.|++++ |.++. ++ ..+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~-N~li~----~~~~~~~~~ 269 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSN-NNLID----FDQGYKVGT 269 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccC-Ccccc----ccccccccc
Confidence 556666666665 2233334455666666666652 1111111222344555555555 31100 22 3344
Q ss_pred CCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCccc
Q 043839 287 FPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYL 364 (415)
Q Consensus 287 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~ 364 (415)
+ +.|+.|.++.|.+....... -..++. ...||+|++|.+..| ++.+|+ ..+..+++|+.|.+..++..
T Consensus 270 l-~~L~~Lnls~tgi~si~~~d------~~s~~k--t~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 L-PGLNQLNLSSTGIASIAEPD------VESLDK--THTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred c-cchhhhhccccCcchhcCCC------ccchhh--hcccccceeeecccC-ccccccccchhhccchhhhhhccccccc
Confidence 5 55555555555443211100 011111 357899999999999 666666 35678889999999888865
Q ss_pred CCCh----hhhcCCCCCCeEEEecCChhhH
Q 043839 365 RKLP----EELWCIKNLCKLELHWPQPHYR 390 (415)
Q Consensus 365 ~~lp----~~l~~l~~L~~L~l~~c~~~~~ 390 (415)
..-. ..|...++|..|+=..|....+
T Consensus 340 ~e~~~a~~~VIAr~~~l~~LN~~di~p~eR 369 (505)
T KOG3207|consen 340 KETDTAKLLVIARISQLVKLNDVDISPNER 369 (505)
T ss_pred ccccceeEEeeeehhhhhhhcccccChHHh
Confidence 4111 2355566666666555555443
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.4e-10 Score=100.64 Aligned_cols=169 Identities=22% Similarity=0.195 Sum_probs=86.0
Q ss_pred CcEEEecCCCCCC-CCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEE
Q 043839 191 LMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLK 267 (415)
Q Consensus 191 L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (415)
|++||++...+.. .+...+..+.+|+.|.+.+.. ..+...+.+-.+|+.|+++.+..-...+..--+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5666665222211 122224556666666666665 4444455566666777776663111222223345666677777
Q ss_pred eecCccccccccccc-CCCCCCCCceEEEEEccc--cCCCCchhh-cCCCCCCeEeecc-----------CCCCCcccEE
Q 043839 268 LVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTK--LMEDPMPTL-EKLPLLEVLKLKQ-----------NSSFPLLKIL 332 (415)
Q Consensus 268 l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~--l~~~~~~~l-~~l~~L~~L~l~~-----------~~~~~~L~~L 332 (415)
++|++.+-+. +. .+.+..++|+.|+++++. +.....+.+ .++|+|..|++++ ...|+.|++|
T Consensus 267 lsWc~l~~~~---Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 267 LSWCFLFTEK---VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred chHhhccchh---hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 7662210000 11 112222667777777773 222233333 3566666666654 3345666666
Q ss_pred EeccCCCcc-ceEEcCCCccCccEEEEecCc
Q 043839 333 HLKSMLWLE-EWTMGAGSMPKLESLILNPCA 362 (415)
Q Consensus 333 ~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~ 362 (415)
.++.|..+. +....++..|+|.+|++.+|-
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 666665544 223455666777777776664
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.5e-10 Score=102.80 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=132.4
Q ss_pred cccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCC
Q 043839 213 KDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFP 288 (415)
Q Consensus 213 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp 288 (415)
++||+|+++... ..+-..+..|.+|+.|.+.+. ...+.+...++.-.+|+.|+++.++++=+. . +. .+..+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~-~~ll~~sc- 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-A-LQLLLSSC- 259 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccccccccchh-H-HHHHHHhh-
Confidence 469999998877 555566788999999999999 678888899999999999999984321000 0 22 34578
Q ss_pred CCceEEEEEccccCCCCchh-hcC-CCCCCeEeecc-------------CCCCCcccEEEeccCCCccc-eEEcCCCccC
Q 043839 289 PTLTQLSLSNTKLMEDPMPT-LEK-LPLLEVLKLKQ-------------NSSFPLLKILHLKSMLWLEE-WTMGAGSMPK 352 (415)
Q Consensus 289 ~~L~~L~l~~~~l~~~~~~~-l~~-l~~L~~L~l~~-------------~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~ 352 (415)
..|..|++++|.+..+.... +.. -++|+.|+++| ...+|+|.+|++++|..++. ....+..++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 99999999999876544332 222 37899999998 45789999999999977773 3345778999
Q ss_pred ccEEEEecCcccCCChh---hhcCCCCCCeEEEecCChhhHhh
Q 043839 353 LESLILNPCAYLRKLPE---ELWCIKNLCKLELHWPQPHYRCN 392 (415)
Q Consensus 353 L~~L~l~~c~~~~~lp~---~l~~l~~L~~L~l~~c~~~~~~~ 392 (415)
|++|.++.|..+ .|+ .+...|+|.+|++.+|-.+...+
T Consensus 340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~me 380 (419)
T KOG2120|consen 340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTME 380 (419)
T ss_pred heeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHH
Confidence 999999999865 343 35678999999999988764433
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.8e-09 Score=98.61 Aligned_cols=166 Identities=26% Similarity=0.258 Sum_probs=84.3
Q ss_pred ccccceeccccCC-CCCc--cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc-cc----C
Q 043839 212 LKDLIFISAVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM-IL----S 283 (415)
Q Consensus 212 l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L-lp----~ 283 (415)
+.+|+...+..+. ...+ .....|++++.|+++.|--.....+......+++|+.|+++. | +| .| .
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-N------rl~~~~~s~~ 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-N------RLSNFISSNT 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-c------cccCCccccc
Confidence 4444444444444 2222 234456666666666652112233334445666666666665 4 33 22 1
Q ss_pred CCCCCCCceEEEEEccccCCCC-chhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceE--EcCCCc
Q 043839 284 EYKFPPTLTQLSLSNTKLMEDP-MPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWT--MGAGSM 350 (415)
Q Consensus 284 ~~~lp~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~--~~~~~l 350 (415)
-..+ ++|+.|.++.|.+++.. ...+..+|+|+.|++.. ...+..|++|+|++|+.+. .+ ...+.+
T Consensus 193 ~~~l-~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l 270 (505)
T KOG3207|consen 193 TLLL-SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTL 270 (505)
T ss_pred hhhh-hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccc
Confidence 1235 66667777777665532 23344566666666655 2223456666666663332 22 345566
Q ss_pred cCccEEEEecCcccC-CChhh-----hcCCCCCCeEEEecCC
Q 043839 351 PKLESLILNPCAYLR-KLPEE-----LWCIKNLCKLELHWPQ 386 (415)
Q Consensus 351 ~~L~~L~l~~c~~~~-~lp~~-----l~~l~~L~~L~l~~c~ 386 (415)
|.|+.|+++.|.... ..|.+ ...+++|++|++...+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 666666666665432 22322 2335666666666555
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=3.1e-08 Score=84.06 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=41.7
Q ss_pred cCCcccEEEcCCcccccCccccc-CccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcc-cCccccceec
Q 043839 148 KFKHLRVLNLGSAVLDLYPPGLE-NLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYS-SSLKDLIFIS 219 (415)
Q Consensus 148 ~~~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i-~~l~~L~~L~ 219 (415)
+...+++|+|+++.++.+. .++ .+.+|+.|++++ +.+..+++|++|++++|. ...+..++ ..+++|++|.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEE
Confidence 3344566666666655432 233 345555555555 455566777777777444 34454444 3578888888
Q ss_pred cccCC---CCCccccCCCCCCCeEEEecccCcchhc-HHHhhhccCCCcEEEeec
Q 043839 220 AVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSG-VSKSLCELHKLECLKLVN 270 (415)
Q Consensus 220 l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~~ 270 (415)
+.++. ..-...+..+++|+.|++.+|+...... -...+..+|+|+.||-..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 88877 2234556778888888888874111111 223456777888777544
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=2e-08 Score=89.69 Aligned_cols=121 Identities=26% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCC
Q 043839 234 LPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLP 313 (415)
Q Consensus 234 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~ 313 (415)
-+.|+++++++| ....+.++..-.+.++.|+++. |.+.+ +..+..+ ++|+.|++++|.++ ..-.+-.++.
T Consensus 283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~-N~i~~----v~nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQ-NRIRT----VQNLAEL-PQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred Hhhhhhcccccc---chhhhhhhhhhccceeEEeccc-cceee----ehhhhhc-ccceEeecccchhH-hhhhhHhhhc
Confidence 355666666665 4455555666666666666666 42211 2234456 66777777776653 2233334556
Q ss_pred CCCeEeecc--------CCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCcccC
Q 043839 314 LLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYLR 365 (415)
Q Consensus 314 ~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~~ 365 (415)
|.++|.+++ .+.+-+|..|++++| +++.+. ..+|++|.|+.+.+.+||..+
T Consensus 353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhhhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666666655 334456777777887 555443 467888889888888888764
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=1.3e-08 Score=92.66 Aligned_cols=214 Identities=21% Similarity=0.192 Sum_probs=143.1
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc----cCccc-------ccCccCCceEecCc-------
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD----LYPPG-------LENLFHLKYLKLIT------- 182 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~lp~~-------i~~l~~L~~L~l~~------- 182 (415)
...+..+.++++....-...+....+.+-+.|+..++++.... .+|+. +-.+++|++++||+
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 5566666676666543223445556777777777777765421 44432 23456777777777
Q ss_pred -----ccccccccCcEEEecCCCCCCC--------------CCCcccCccccceeccccCC------CCCccccCCCCCC
Q 043839 183 -----PLLKLMQKLMHLNFGSITMPSP--------------PNNYSSSLKDLIFISAVHPS------SCTPDILGRLPNV 237 (415)
Q Consensus 183 -----~~i~~l~~L~~L~l~~~~~~~~--------------~p~~i~~l~~L~~L~l~~~~------~~~~~~l~~l~~L 237 (415)
.-+.++..|++|.+. ||..+. .-.-+++-+.|+++....+. ..+...+...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 556778999999999 554332 12234567789999888777 3344557788999
Q ss_pred CeEEEecccCc--chhcHHHhhhccCCCcEEEeecCccc-cccccc-cc-CCCCCCCCceEEEEEccccCCCCchhh---
Q 043839 238 QTLRISGDLSY--HHSGVSKSLCELHKLECLKLVNEGKM-WQFSRM-IL-SEYKFPPTLTQLSLSNTKLMEDPMPTL--- 309 (415)
Q Consensus 238 ~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~i-l~~l~L-lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l--- 309 (415)
+.+.+..|... ....+...+..+++|+.|++.. |-+ .+. .. +. .+..+ ++|+.|++++|.+.......+
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~eg-s~~LakaL~s~-~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEG-SVALAKALSSW-PHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHH-HHHHHHHhccc-chheeecccccccccccHHHHHHH
Confidence 99999888521 1234567888999999999988 411 000 00 23 44456 799999999998766443333
Q ss_pred --cCCCCCCeEeecc--------------CCCCCcccEEEeccCC
Q 043839 310 --EKLPLLEVLKLKQ--------------NSSFPLLKILHLKSML 338 (415)
Q Consensus 310 --~~l~~L~~L~l~~--------------~~~~~~L~~L~l~~~~ 338 (415)
...|+|++|.+.+ ...-|.|+.|++++|.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 2479999999987 3447899999999994
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=4.5e-09 Score=97.61 Aligned_cols=264 Identities=19% Similarity=0.154 Sum_probs=143.9
Q ss_pred CceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cc-cCcccc-cCccCCceEecCc----------cccccc
Q 043839 122 MYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LD-LYPPGL-ENLFHLKYLKLIT----------PLLKLM 188 (415)
Q Consensus 122 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~lp~~i-~~l~~L~~L~l~~----------~~i~~l 188 (415)
..+|.|.+.+..... ..-+..+..+++++..|.+.+|. ++ ..-.++ ..+..|+++++.. .-...+
T Consensus 138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 356667776666543 44455666777777777777776 33 111122 2455666666654 122345
Q ss_pred ccCcEEEecCCCCCCC--CCCcccCccccceeccccCC----CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839 189 QKLMHLNFGSITMPSP--PNNYSSSLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK 262 (415)
Q Consensus 189 ~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 262 (415)
++|++|+++++..... +-.....+..++.+.+.+|. ..+...-+.+..+.++++..|.......+...-..+..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 6666666665543211 11112334445555444544 11111112233344444334320111111111223445
Q ss_pred CcEEEeecCccccccccccc--C-CCCCCCCceEEEEEccc-cCCCCchhhc-CCCCCCeEeecc------------CCC
Q 043839 263 LECLKLVNEGKMWQFSRMIL--S-EYKFPPTLTQLSLSNTK-LMEDPMPTLE-KLPLLEVLKLKQ------------NSS 325 (415)
Q Consensus 263 L~~L~l~~~~~il~~l~Llp--~-~~~lp~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~------------~~~ 325 (415)
|+.++.+...++=+ .+ . -.+. ++|+.|.+.+|+ ++......++ +++.|+.+++.+ ...
T Consensus 296 lq~l~~s~~t~~~d----~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 296 LQVLCYSSCTDITD----EVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhcccCCCCCch----HHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 55555554111000 11 1 1245 777777777774 3333334444 567777777766 456
Q ss_pred CCcccEEEeccCCCccce-----EEcCCCccCccEEEEecCcccC-CChhhhcCCCCCCeEEEecCChhhHhh
Q 043839 326 FPLLKILHLKSMLWLEEW-----TMGAGSMPKLESLILNPCAYLR-KLPEELWCIKNLCKLELHWPQPHYRCN 392 (415)
Q Consensus 326 ~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~~~-~lp~~l~~l~~L~~L~l~~c~~~~~~~ 392 (415)
++.|+.|.++.|..++.- ...-.++..|+.+.+++|+.+. ..-+.+..+++|+.+++.+|...+++-
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 788999999998766633 3334678889999999999765 344667889999999999998765543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=1.4e-07 Score=92.19 Aligned_cols=168 Identities=24% Similarity=0.289 Sum_probs=104.2
Q ss_pred cccCcEEEecCCCCCCCCCCcccCcc-ccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839 188 MQKLMHLNFGSITMPSPPNNYSSSLK-DLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC 265 (415)
Q Consensus 188 l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 265 (415)
++.++.|++. +.....+|...+.+. +|+.|++.++. ..++..++.+++|+.|++..| ....++...+..++|+.
T Consensus 115 ~~~l~~L~l~-~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N---~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLD-NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN---DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecC-CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc---hhhhhhhhhhhhhhhhh
Confidence 3455666666 445556666666664 77777777776 666566677777777777776 45555555556677777
Q ss_pred EEeecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEec
Q 043839 266 LKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLK 335 (415)
Q Consensus 266 L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~ 335 (415)
|++++ +.+-. +| .+... ..|+++.+++|.. ...+..++++.++..+.+.+ .+.+++++.|+++
T Consensus 191 L~ls~-N~i~~----l~~~~~~~-~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 191 LDLSG-NKISD----LPPEIELL-SALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred eeccC-Ccccc----Cchhhhhh-hhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 77776 41100 44 33333 5577777777742 24455556666666665443 3445667777777
Q ss_pred cCCCccceEEcCCCccCccEEEEecCcccCCCh
Q 043839 336 SMLWLEEWTMGAGSMPKLESLILNPCAYLRKLP 368 (415)
Q Consensus 336 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp 368 (415)
+| .+..++. ++.+.+|+.|+++++......|
T Consensus 264 ~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 264 NN-QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cc-ccccccc-ccccCccCEEeccCccccccch
Confidence 77 6666665 7788888888888877664433
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=6.3e-09 Score=100.17 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=73.9
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS- 224 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~- 224 (415)
...|++.|.+..+|..++.+..|..+.+.. ..+.++..|.+|+++ .+....+|..+..|+ |+.|-++++.
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls-~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS-SNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc-cchhhcCChhhhcCc-ceeEEEecCcc
Confidence 455666666666666555544444444433 333334444444444 333344555554443 5555555555
Q ss_pred CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCC
Q 043839 225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~ 303 (415)
..+|..++.+..|..|+.+.| ....+|+.++.+.+|+.|.+.. |.++. +| .+..+ .|.+|++++|++ .
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~n---ei~slpsql~~l~slr~l~vrR-n~l~~----lp~El~~L--pLi~lDfScNki-s 224 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKN---EIQSLPSQLGYLTSLRDLNVRR-NHLED----LPEELCSL--PLIRLDFSCNKI-S 224 (722)
T ss_pred ccCCcccccchhHHHhhhhhh---hhhhchHHhhhHHHHHHHHHhh-hhhhh----CCHHHhCC--ceeeeecccCce-e
Confidence 555555555555555555554 3444555555555555555444 31111 44 44433 255555555554 2
Q ss_pred CCchhhcCCCCCCeEe
Q 043839 304 DPMPTLEKLPLLEVLK 319 (415)
Q Consensus 304 ~~~~~l~~l~~L~~L~ 319 (415)
.+|-.+.++..|++|.
T Consensus 225 ~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred ecchhhhhhhhheeee
Confidence 3444444444443333
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=4.3e-08 Score=87.55 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=90.5
Q ss_pred ccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CC
Q 043839 209 SSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SE 284 (415)
Q Consensus 209 i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~ 284 (415)
+...+.|++++++++. ..+-.++.-+|+++.|+++.|+ .. .+ .+++.+++|+.|++++ | .| +. |-
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~-~v-~nLa~L~~L~~LDLS~-N------~Ls~~~Gwh 348 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IR-TV-QNLAELPQLQLLDLSG-N------LLAECVGWH 348 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc--ee-ee-hhhhhcccceEeeccc-c------hhHhhhhhH
Confidence 3445678888888888 7777777778899999998883 22 22 2377888899999988 4 33 44 66
Q ss_pred CCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCC
Q 043839 285 YKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLW 339 (415)
Q Consensus 285 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~ 339 (415)
..+ .++++|.+++|.+ +..+.++++-+|..|++.+ .+.+|+|+.+.+.+|+.
T Consensus 349 ~KL-GNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 349 LKL-GNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhh-cCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 678 8899999999876 4567788888899999887 78899999999999853
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.45 E-value=1.1e-08 Score=98.43 Aligned_cols=153 Identities=22% Similarity=0.261 Sum_probs=110.4
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCC
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSIT 200 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~ 200 (415)
+..|.++.++.+... ..+..+.++..|.+|+++.|.+..+|..++.|+ |+.|-++ |+
T Consensus 97 f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-----------------Lkvli~s-NN 153 (722)
T KOG0532|consen 97 FVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-----------------LKVLIVS-NN 153 (722)
T ss_pred HHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-----------------ceeEEEe-cC
Confidence 555666666665542 245566667777777777777777776666543 5555566 77
Q ss_pred CCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccc
Q 043839 201 MPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSR 279 (415)
Q Consensus 201 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~ 279 (415)
....+|..++.+..|..|+.+.|. ..+|..++.+.+|+.|.++.| ....+|+.+..+ .|..|+++. | +
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfSc-N------k 222 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSC-N------K 222 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeeccc-C------c
Confidence 777888888888888888888888 888888888888888888886 566777777744 477888887 6 4
Q ss_pred c--cc-CCCCCCCCceEEEEEccccCCCCchhh
Q 043839 280 M--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTL 309 (415)
Q Consensus 280 L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l 309 (415)
+ +| .|.++ ..|++|-|.+|.+. .+|..+
T Consensus 223 is~iPv~fr~m-~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 223 ISYLPVDFRKM-RHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred eeecchhhhhh-hhheeeeeccCCCC-CChHHH
Confidence 4 88 88888 88888888888874 444443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=1.8e-07 Score=91.32 Aligned_cols=167 Identities=25% Similarity=0.249 Sum_probs=118.6
Q ss_pred HHhccCCcccEEEcCCcccccCcccccCcc-CCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCcccc
Q 043839 144 NFCKKFKHLRVLNLGSAVLDLYPPGLENLF-HLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDL 215 (415)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 215 (415)
..+..++.++.|++.++.++.+|..+..+. +|+.|++++ ..++.+++|+.|+++ .+....+|...+.+++|
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC-Cchhhhhhhhhhhhhhh
Confidence 335556788999999999988888888775 888888888 256778888888888 55556677666677888
Q ss_pred ceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceE
Q 043839 216 IFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQ 293 (415)
Q Consensus 216 ~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~ 293 (415)
+.|.++++. ..+|..+.....|++|.+.++ .....+..+..+.++..+.+.. +.+.. ++ .+..+ ++++.
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N---~~~~~~~~~~~~~~l~~l~l~~-n~~~~----~~~~~~~l-~~l~~ 259 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNN---SIIELLSSLSNLKNLSGLELSN-NKLED----LPESIGNL-SNLET 259 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCC---cceecchhhhhcccccccccCC-ceeee----ccchhccc-cccce
Confidence 888888888 777776666677888888876 2444555666667777666555 31100 35 66677 77888
Q ss_pred EEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839 294 LSLSNTKLMEDPMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 294 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 322 (415)
|++++|.+... +. ++.+.+|+.|++++
T Consensus 260 L~~s~n~i~~i-~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 260 LDLSNNQISSI-SS-LGSLTNLRELDLSG 286 (394)
T ss_pred ecccccccccc-cc-ccccCccCEEeccC
Confidence 88888876432 22 77777777777765
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=4e-07 Score=77.29 Aligned_cols=122 Identities=27% Similarity=0.310 Sum_probs=36.9
Q ss_pred cccCcEEEecCCCCCCCCCCccc-CccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhh-hccCCCc
Q 043839 188 MQKLMHLNFGSITMPSPPNNYSS-SLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSL-CELHKLE 264 (415)
Q Consensus 188 l~~L~~L~l~~~~~~~~~p~~i~-~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~ 264 (415)
..++++|++.++.+. .+ +.++ .+.+|+.|++++|. ..+ +.+..+++|++|++++| ....+.+.+ ..+++|+
T Consensus 18 ~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N---~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNN---RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS------S-CHHHHHH-TT--
T ss_pred ccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCC---CCCccccchHHhCCcCC
Confidence 344555555533322 22 2344 35666666666666 332 34556677777777776 222332233 2456666
Q ss_pred EEEeecCccc--ccccccccCCCCCCCCceEEEEEccccCCCC---chhhcCCCCCCeEee
Q 043839 265 CLKLVNEGKM--WQFSRMILSEYKFPPTLTQLSLSNTKLMEDP---MPTLEKLPLLEVLKL 320 (415)
Q Consensus 265 ~L~l~~~~~i--l~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~---~~~l~~l~~L~~L~l 320 (415)
.|+++. |.| ++. +-.+..+ ++|+.|++.+|+++... ...+..+|+|+.||-
T Consensus 92 ~L~L~~-N~I~~l~~---l~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSN-NKISDLNE---LEPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TT-S---SCCC---CGGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcC-CcCCChHH---hHHHHcC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 666665 421 000 1134456 77777777777765431 124456666666654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.5e-06 Score=60.34 Aligned_cols=59 Identities=27% Similarity=0.287 Sum_probs=45.9
Q ss_pred CcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 327 PLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 327 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
|+|++|++++| .++.+|. .+.++++|++|++++|....--|..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57888888888 7888874 57888899999998887754333567888889999888874
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=4.3e-06 Score=86.07 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=76.1
Q ss_pred ccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCCCC
Q 043839 214 DLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKF 287 (415)
Q Consensus 214 ~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~l 287 (415)
.++.|++.++. +.+|..++.+++|+.|++++| ...+.+|..++.+++|+.|+++. | ++ +| .+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N--~l~g~iP~~~~~l~~L~~LdLs~-N------~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN--SIRGNIPPSLGSITSLEVLDLSY-N------SFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCC--cccCcCChHHhCCCCCCEEECCC-C------CCCCCCchHHhcC
Confidence 36778888777 678888888888888888888 56678888888888888888887 5 33 67 78888
Q ss_pred CCCceEEEEEccccCCCCchhhcCC-CCCCeEeec
Q 043839 288 PPTLTQLSLSNTKLMEDPMPTLEKL-PLLEVLKLK 321 (415)
Q Consensus 288 p~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~ 321 (415)
++|+.|++++|.+.+.+|..++.. .++..+++.
T Consensus 490 -~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 490 -TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred -CCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 899999999998888888877653 344444443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=4.5e-06 Score=85.94 Aligned_cols=96 Identities=20% Similarity=0.167 Sum_probs=79.5
Q ss_pred ceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEec
Q 043839 291 LTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNP 360 (415)
Q Consensus 291 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 360 (415)
++.|+|++|.+.+.+|..++.+++|+.|++++ .+.+++|+.|++++|.....+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77888888888888888888899999998886 34567899999999966668898899999999999999
Q ss_pred CcccCCChhhhcCC-CCCCeEEEecCC
Q 043839 361 CAYLRKLPEELWCI-KNLCKLELHWPQ 386 (415)
Q Consensus 361 c~~~~~lp~~l~~l-~~L~~L~l~~c~ 386 (415)
|...+.+|..+... .++..+++.+++
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 99999999887653 466778777654
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.10 E-value=1e-07 Score=88.82 Aligned_cols=253 Identities=19% Similarity=0.143 Sum_probs=163.8
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cc-cCcccc-cCccCCceEecCc----------ccccc
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LD-LYPPGL-ENLFHLKYLKLIT----------PLLKL 187 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~lp~~i-~~l~~L~~L~l~~----------~~i~~ 187 (415)
++++..|.+.+....+ +..+...-..++.|+.|++..|. ++ .....+ ..+++|.||++++ .....
T Consensus 163 CpnIehL~l~gc~~iT--d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKIT--DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred CCchhhhhhhcceecc--HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 8888888888887654 45556667889999999999965 66 333333 4688999999999 22334
Q ss_pred cccCcEEEecCCCCCCCCC---CcccCccccceeccccCC----CCCccccCCCCCCCeEEEecccCcchhcHHHhhh-c
Q 043839 188 MQKLMHLNFGSITMPSPPN---NYSSSLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC-E 259 (415)
Q Consensus 188 l~~L~~L~l~~~~~~~~~p---~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~ 259 (415)
+++++.+.+.||.. ...- ..-+.+.-+..+++..|. ..+...-..+..|+.|+.+++.. ..+.....++ .
T Consensus 241 ~~~l~~~~~kGC~e-~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLE-LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-ITDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhccccc-ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-CchHHHHHHhcC
Confidence 56666666664321 1110 001223334555555665 22233334578889999988852 3333334444 6
Q ss_pred cCCCcEEEeecCccccccccc----cc-CCCCCCCCceEEEEEccccCCC--CchhhcCCCCCCeEeecc----------
Q 043839 260 LHKLECLKLVNEGKMWQFSRM----IL-SEYKFPPTLTQLSLSNTKLMED--PMPTLEKLPLLEVLKLKQ---------- 322 (415)
Q Consensus 260 l~~L~~L~l~~~~~il~~l~L----lp-~~~~lp~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~---------- 322 (415)
..+|+.+.++.+. +| +. .-.+. +.|+.+++..|....+ +.+.-.+++.|+.|.++.
T Consensus 319 ~~~L~~l~l~~c~------~fsd~~ft~l~rn~-~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 319 CHNLQVLELSGCQ------QFSDRGFTMLGRNC-PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred CCceEEEeccccc------hhhhhhhhhhhcCC-hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh
Confidence 7889999888722 11 12 22345 8899999988864322 233334789999999885
Q ss_pred -----CCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCC--ChhhhcCCCCCCeEEEec
Q 043839 323 -----NSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRK--LPEELWCIKNLCKLELHW 384 (415)
Q Consensus 323 -----~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~--lp~~l~~l~~L~~L~l~~ 384 (415)
..+...|+.+.+++|+.+++- -.....+++|+.+++.+|..... +-..-.++|+++...+.+
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 234567999999999888733 34577899999999999996543 334455688887666543
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.06 E-value=1.8e-06 Score=76.38 Aligned_cols=218 Identities=14% Similarity=0.083 Sum_probs=140.0
Q ss_pred hccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc------------------ccccccccCcEEEecCCCCC
Q 043839 146 CKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT------------------PLLKLMQKLMHLNFGSITMP 202 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~------------------~~i~~l~~L~~L~l~~~~~~ 202 (415)
+.-+..++.++|+||.+. .+...|.+-.+|+..++++ +.+-+|++|+..+++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 444677788888888765 3344455556777777776 66778899999999988887
Q ss_pred CCCCCc----ccCccccceeccccCC-CCC-----c---------cccCCCCCCCeEEEeccc--CcchhcHHHhhhccC
Q 043839 203 SPPNNY----SSSLKDLIFISAVHPS-SCT-----P---------DILGRLPNVQTLRISGDL--SYHHSGVSKSLCELH 261 (415)
Q Consensus 203 ~~~p~~----i~~l~~L~~L~l~~~~-~~~-----~---------~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~ 261 (415)
...|+. |++-+.|.+|.+.+|+ +.+ - .-..+-|.|++.....|+ +.........+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 777764 5677889999998887 222 1 112345788888887774 111222333444556
Q ss_pred CCcEEEeecCcccccc-c-cccc-CCCCCCCCceEEEEEccccCCCCchh----hcCCCCCCeEeecc------------
Q 043839 262 KLECLKLVNEGKMWQF-S-RMIL-SEYKFPPTLTQLSLSNTKLMEDPMPT----LEKLPLLEVLKLKQ------------ 322 (415)
Q Consensus 262 ~L~~L~l~~~~~il~~-l-~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~------------ 322 (415)
+|+.+.+.. |.|-.. + .|+- .+..+ .+|+.|++..|.++-..... +..++.|+.|.+..
T Consensus 186 ~lk~vki~q-NgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 186 NLKEVKIQQ-NGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred CceeEEeee-cCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 888888887 533000 0 0000 22345 88999999999876543333 33457778888876
Q ss_pred ----CCCCCcccEEEeccCCCccceE-------EcCCCccCccEEEEecCcccC
Q 043839 323 ----NSSFPLLKILHLKSMLWLEEWT-------MGAGSMPKLESLILNPCAYLR 365 (415)
Q Consensus 323 ----~~~~~~L~~L~l~~~~~l~~l~-------~~~~~l~~L~~L~l~~c~~~~ 365 (415)
.-.+|+|..|...+|..-..+. ...+++|-|..|.+.+|....
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 2346788888888874333221 234678888888888887543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.3e-06 Score=76.67 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=52.9
Q ss_pred CCCCCceEEEEEccccCCCC-chhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCc
Q 043839 286 KFPPTLTQLSLSNTKLMEDP-MPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCA 362 (415)
Q Consensus 286 ~lp~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~ 362 (415)
.| |++..+.+..|.+.... -.. ...+|.+..|.++.+ ++++|. +.+..|++|..|.+.++|
T Consensus 197 ~F-pnv~sv~v~e~PlK~~s~ek~--------------se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 197 IF-PNVNSVFVCEGPLKTESSEKG--------------SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred hc-ccchheeeecCcccchhhccc--------------CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCc
Confidence 36 77778888777654321 111 234555556666665 666664 457788888888888888
Q ss_pred ccCCChh------hhcCCCCCCeEEEecCCh
Q 043839 363 YLRKLPE------ELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 363 ~~~~lp~------~l~~l~~L~~L~l~~c~~ 387 (415)
....+-. -++++++++.|+=+....
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred ccccccCCcceEEEEeeccceEEecCcccch
Confidence 7654432 256677777776554433
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=8.7e-06 Score=73.02 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCcccCCCh--hhhcCCCCCCeEEEecCC
Q 043839 323 NSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYLRKLP--EELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 ~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~~~lp--~~l~~l~~L~~L~l~~c~ 386 (415)
..-||++..+-+..|+ +.... .....+|.+--|++..+..- +.. ..+..++.|..|.+.+.|
T Consensus 195 ~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred HhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCc
Confidence 4458888888888884 33322 34567888888888877543 222 467889999999999887
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.78 E-value=2e-05 Score=54.62 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=29.9
Q ss_pred CceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcc-cccCccCCceEecC
Q 043839 122 MYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLI 181 (415)
Q Consensus 122 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~ 181 (415)
|+|++|.+.++.. ..+.+..|..+++|++|++++|.++.++. .+.++++|++|+++
T Consensus 1 p~L~~L~l~~n~l----~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNNKL----TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSSTE----SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred CcCcEEECCCCCC----CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence 3555666666554 44444556666666666666666654443 33444444444443
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=2e-05 Score=81.28 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=13.8
Q ss_pred CCceEEEEEccccCC-CCchhhcCCCCCCeEeecc
Q 043839 289 PTLTQLSLSNTKLME-DPMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 289 ~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~ 322 (415)
++|+.|.+.+-.+.. .....+.++.+|++||++.
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 444444444433322 2223334444444444443
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=1.5e-05 Score=82.13 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=56.9
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc---------ccccccccC
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---------PLLKLMQKL 191 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---------~~i~~l~~L 191 (415)
+|.||+|.+.+..... ..+...+.++++|+.||+++++++.+ .+|++|++|+.|.+++ ..+.+|++|
T Consensus 147 LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 8899999888876642 33456688899999999999988877 6788888888888877 456667777
Q ss_pred cEEEec
Q 043839 192 MHLNFG 197 (415)
Q Consensus 192 ~~L~l~ 197 (415)
+.||++
T Consensus 223 ~vLDIS 228 (699)
T KOG3665|consen 223 RVLDIS 228 (699)
T ss_pred Ceeecc
Confidence 777777
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=5.9e-05 Score=48.28 Aligned_cols=33 Identities=36% Similarity=0.506 Sum_probs=20.5
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCc
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT 182 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 182 (415)
++|++|++++|.++.+|..+++|++|++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 457777777777777766666666666666654
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.56 E-value=5.8e-06 Score=82.72 Aligned_cols=230 Identities=23% Similarity=0.178 Sum_probs=109.8
Q ss_pred HHhccCCcccEEEcCCcc-ccc--CcccccCccCCceEecCc-------------ccccccccCcEEEecCCCC-CCCCC
Q 043839 144 NFCKKFKHLRVLNLGSAV-LDL--YPPGLENLFHLKYLKLIT-------------PLLKLMQKLMHLNFGSITM-PSPPN 206 (415)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~-------------~~i~~l~~L~~L~l~~~~~-~~~~p 206 (415)
.....+++|+.|.+.++. +.. +-.....+++|+.|++++ .....+.+|+.|+++++.. ....-
T Consensus 182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 334456777777777765 332 223344566666666652 2223456667777764442 22222
Q ss_pred Cccc-CccccceeccccCC----CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccc
Q 043839 207 NYSS-SLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMI 281 (415)
Q Consensus 207 ~~i~-~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Ll 281 (415)
..+. .+++|++|.+..|. ..+.....++++|++|+++++.......+......+++|+.|.+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~----------- 330 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS----------- 330 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh-----------
Confidence 2222 26677777755554 2333334567777777777774221223334444556666554433
Q ss_pred cCCCCCCCCceEEEEEccccCC---CCchhhcCCCCCCeEeeccCCCCCccc-EEEeccCCCc-cceEEcCCCccCccEE
Q 043839 282 LSEYKFPPTLTQLSLSNTKLME---DPMPTLEKLPLLEVLKLKQNSSFPLLK-ILHLKSMLWL-EEWTMGAGSMPKLESL 356 (415)
Q Consensus 282 p~~~~lp~~L~~L~l~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~~~~L~-~L~l~~~~~l-~~l~~~~~~l~~L~~L 356 (415)
...+ +.++.+.+.++.-.. ........+++++.+.+...+ ..... .+.+.+|+.+ ..+.........++.|
T Consensus 331 --~~~c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L 406 (482)
T KOG1947|consen 331 --LNGC-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVL 406 (482)
T ss_pred --cCCC-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceE
Confidence 0112 334444444432211 111233455555555554322 12222 3445555555 2222223333336667
Q ss_pred EEecCcccCCCh-hhhcC-CCCCCeEEEecCChh
Q 043839 357 ILNPCAYLRKLP-EELWC-IKNLCKLELHWPQPH 388 (415)
Q Consensus 357 ~l~~c~~~~~lp-~~l~~-l~~L~~L~l~~c~~~ 388 (415)
+++.|.....-- ..... +..+..+++.+|+..
T Consensus 407 ~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 407 NLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 776666443111 11111 556666666666643
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=1.4e-05 Score=78.38 Aligned_cols=207 Identities=24% Similarity=0.221 Sum_probs=112.9
Q ss_pred hccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839 146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS 219 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 219 (415)
+..+++|..|++.++.+..+...+..+++|++|++++ ..+..++.|+.|++.+|.+ ..+ .++..+++|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLI-SDI-SGLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcc-hhc-cCCccchhhhccc
Confidence 5667777777777777776655466677777777777 4555566677777774433 222 2345577777777
Q ss_pred cccCC-CCCccc-cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCC--ceEEE
Q 043839 220 AVHPS-SCTPDI-LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPT--LTQLS 295 (415)
Q Consensus 220 l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~--L~~L~ 295 (415)
+.++. ..+... ...+.+++.+++.++. ... ...+..+..+..+++.. +.+-. +-.+..+ .. |+.++
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~-n~i~~----~~~l~~~-~~~~L~~l~ 238 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLD-NKISK----LEGLNEL-VMLHLRELY 238 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhccc-cccee----ccCcccc-hhHHHHHHh
Confidence 77777 333332 4667777777777763 111 11111222222222222 21000 0011222 22 78888
Q ss_pred EEccccCCCCchhhcCCCCCCeEeecc--------CCCCCcccEEEeccCCCccc---eEE-cCCCccCccEEEEecCcc
Q 043839 296 LSNTKLMEDPMPTLEKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEE---WTM-GAGSMPKLESLILNPCAY 363 (415)
Q Consensus 296 l~~~~l~~~~~~~l~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~---l~~-~~~~l~~L~~L~l~~c~~ 363 (415)
+.++.+. ..+..+..++.+..|++.. ....+.+..+....+..... ... .....+.++...+..++.
T Consensus 239 l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 239 LSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cccCccc-cccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 8888763 3335566677777777765 22334455555555532211 111 155677788888877775
Q ss_pred cC
Q 043839 364 LR 365 (415)
Q Consensus 364 ~~ 365 (415)
-.
T Consensus 318 ~~ 319 (414)
T KOG0531|consen 318 RK 319 (414)
T ss_pred cc
Confidence 54
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00037 Score=66.79 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=42.4
Q ss_pred hccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839 146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS- 224 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~- 224 (415)
+..+++++.|++++|.++.+| .++ .+|++|.+++|.....+|..+. .+|++|.+.+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~LP---------------~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----VLP---------------NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPE 106 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----CCC---------------CCCcEEEccCCCCcccCCchhh--hhhhheEccCccc
Confidence 556778888888887666665 222 2345555553444455555442 467777777763
Q ss_pred -CCCccccCCCCCCCeEEEecc
Q 043839 225 -SCTPDILGRLPNVQTLRISGD 245 (415)
Q Consensus 225 -~~~~~~l~~l~~L~~L~l~~~ 245 (415)
..+|. +|+.|++..+
T Consensus 107 L~sLP~------sLe~L~L~~n 122 (426)
T PRK15386 107 ISGLPE------SVRSLEIKGS 122 (426)
T ss_pred cccccc------ccceEEeCCC
Confidence 43443 3556666544
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=1.2e-06 Score=86.97 Aligned_cols=94 Identities=28% Similarity=0.325 Sum_probs=58.1
Q ss_pred CCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEE
Q 043839 289 PTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLIL 358 (415)
Q Consensus 289 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 358 (415)
+.++.|+|+.|+++.. ..+..|+.|+.|+|+. ..++ .|+.|.+++| .++++ ..+.++.+|+.|++
T Consensus 187 ~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhccch
Confidence 6666666666665432 2556666666666665 1122 3777777777 45554 24567888888888
Q ss_pred ecCcccCC-ChhhhcCCCCCCeEEEecCCh
Q 043839 359 NPCAYLRK-LPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 359 ~~c~~~~~-lp~~l~~l~~L~~L~l~~c~~ 387 (415)
++|-..+. =-.-++.+..|+.|++.|+|-
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88765541 112355677788888887664
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.00056 Score=65.55 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=70.9
Q ss_pred cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchh
Q 043839 231 LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPT 308 (415)
Q Consensus 231 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~ 308 (415)
+..+.+++.|++++| ....+| .-..+|+.|.++.+. ++ +| ..+|++|++|++++|.....+|
T Consensus 48 ~~~~~~l~~L~Is~c---~L~sLP---~LP~sLtsL~Lsnc~------nLtsLP--~~LP~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC---DIESLP---VLPNELTEITIENCN------NLTTLP--GSIPEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred HHHhcCCCEEEeCCC---CCcccC---CCCCCCcEEEccCCC------CcccCC--chhhhhhhheEccCcccccccc--
Confidence 455789999999988 455555 123469999998733 22 33 2245789999999883223344
Q ss_pred hcCCCCCCeEeecc-----CCCC-CcccEEEeccCCCccceEEcCCCc-cCccEEEEecCcccCCChhhhcCCCCCCeEE
Q 043839 309 LEKLPLLEVLKLKQ-----NSSF-PLLKILHLKSMLWLEEWTMGAGSM-PKLESLILNPCAYLRKLPEELWCIKNLCKLE 381 (415)
Q Consensus 309 l~~l~~L~~L~l~~-----~~~~-~~L~~L~l~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~ 381 (415)
++|+.|++.+ ...+ ++|+.|.+.++......... ..+ ++|++|.+.+|... .+|..+. .+|+.|.
T Consensus 112 ----~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 112 ----ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ----cccceEEeCCCCCcccccCcchHhheeccccccccccccc-cccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 3455555543 1222 35666666433211111000 112 46777777776654 2343332 4566666
Q ss_pred EecC
Q 043839 382 LHWP 385 (415)
Q Consensus 382 l~~c 385 (415)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 5543
No 56
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.32 E-value=5.5e-05 Score=70.36 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=36.8
Q ss_pred hhcccCCCccchHHHHhhcccCCCCceechhhHHH-hhcCCCeee
Q 043839 14 QIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ-LINPSRLHS 57 (415)
Q Consensus 14 ~~lSY~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~-L~~~~li~~ 57 (415)
+.+||+.||++.|+||+|||+||+++.|+++.++. ++..++++.
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 35999999999999999999999999999999999 566666653
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=5.3e-06 Score=82.65 Aligned_cols=158 Identities=24% Similarity=0.203 Sum_probs=78.4
Q ss_pred HHHhccCCcccEEEcCCcccccCcccccCcc-CCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839 143 ENFCKKFKHLRVLNLGSAVLDLYPPGLENLF-HLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV 221 (415)
Q Consensus 143 ~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 221 (415)
+..+..++.||+|.+.+|.+... ..+..+. .|+.|.-.. ++..|+++--+ | ++.+-.++ ....|.+.+.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~----Sl~Al~~v~as-c--ggd~~ns~-~Wn~L~~a~fs 172 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHN----SLDALRHVFAS-C--GGDISNSP-VWNKLATASFS 172 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhc----cHHHHHHHHHH-h--ccccccch-hhhhHhhhhcc
Confidence 44566778888888888877642 1222222 233332221 11112221111 1 01111100 01123444444
Q ss_pred cCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEc
Q 043839 222 HPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSN 298 (415)
Q Consensus 222 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~ 298 (415)
++. ..+-..+.-++.|+.|+++.| ..... ..+..+++|++|++++ | .| +|.++.-...|..|.+++
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshN--k~~~v--~~Lr~l~~LkhLDlsy-N------~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHN--KFTKV--DNLRRLPKLKHLDLSY-N------CLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchh--hhhhh--HHHHhccccccccccc-c------hhccccccchhhhhheeeeecc
Confidence 444 445555666777777777777 23322 2667777777777777 5 44 552221113477777777
Q ss_pred cccCCCCchhhcCCCCCCeEeecc
Q 043839 299 TKLMEDPMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 299 ~~l~~~~~~~l~~l~~L~~L~l~~ 322 (415)
|.++ ....+.++.+|+.|+++.
T Consensus 242 N~l~--tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 242 NALT--TLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred cHHH--hhhhHHhhhhhhccchhH
Confidence 7653 234455566666666654
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=4.1e-05 Score=75.22 Aligned_cols=226 Identities=23% Similarity=0.187 Sum_probs=130.1
Q ss_pred ccCCcccEEEcCCcccccCcccccCccCCceEecCc------cc-ccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839 147 KKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PL-LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS 219 (415)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 219 (415)
..+..+..+.+..+.+...-..++.+++|.+|++.+ .. +..+++|++|++++|.+ ..+ .++..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKL-EGLSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccc-ccc-cchhhccchhhhe
Confidence 455667777788888776555678889999999988 44 67789999999995554 333 2366777799999
Q ss_pred cccCCCCCccccCCCCCCCeEEEecccCcchhcHHHh-hhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEc
Q 043839 220 AVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKS-LCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSN 298 (415)
Q Consensus 220 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~ 298 (415)
+.++.-.-...+..+++|+.++++++. ...+... +..+.+++.+.+.. +.+-+ +.++..+ ..+..+++..
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~---i~~ie~~~~~~~~~l~~l~l~~-n~i~~----i~~~~~~-~~l~~~~l~~ 217 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNR---IVDIENDELSELISLEELDLGG-NSIRE----IEGLDLL-KKLVLLSLLD 217 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcch---hhhhhhhhhhhccchHHHhccC-Cchhc----ccchHHH-HHHHHhhccc
Confidence 999884445556668999999999883 2222221 56777888887777 42100 1133334 4455556666
Q ss_pred cccCCCCchhhcCCCC--CCeEeecc---------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccC--
Q 043839 299 TKLMEDPMPTLEKLPL--LEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLR-- 365 (415)
Q Consensus 299 ~~l~~~~~~~l~~l~~--L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~-- 365 (415)
+.++.. ..+..+.. |+.+++.+ ...+..+..|++.++ .+... ..+...+.+..+....++...
T Consensus 218 n~i~~~--~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 218 NKISKL--EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN-RISNL-EGLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred ccceec--cCcccchhHHHHHHhcccCccccccccccccccccccchhhc-ccccc-ccccccchHHHhccCcchhcchh
Confidence 655321 11112222 55555554 123445555555544 22211 123344445555555554331
Q ss_pred -CChh-hhcCCCCCCeEEEecCCh
Q 043839 366 -KLPE-ELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 366 -~lp~-~l~~l~~L~~L~l~~c~~ 387 (415)
.... .....+.+..+.+...|.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred hhhccccccccccccccccccCcc
Confidence 1111 134455666666665554
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.25 E-value=0.00021 Score=45.75 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=20.1
Q ss_pred cccEEEeccCCCccceEEcCCCccCccEEEEecCccc
Q 043839 328 LLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL 364 (415)
Q Consensus 328 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~ 364 (415)
+|++|++++| .++++|..++.|++|+.|++++|+..
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCC
Confidence 4556666665 55555555566666666666666543
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.92 E-value=0.00028 Score=62.83 Aligned_cols=175 Identities=18% Similarity=0.186 Sum_probs=96.7
Q ss_pred HhccCCcccEEEcCCcccc-cCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCc-c-------------
Q 043839 145 FCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNY-S------------- 209 (415)
Q Consensus 145 ~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~-i------------- 209 (415)
.+-+|++|+..+|+.|-+. ..|..++ +.|++-+.|++|.++ |+..+++..+ |
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~------------d~is~~t~l~HL~l~-NnGlGp~aG~rigkal~~la~nKKa 153 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELG------------DLISSSTDLVHLKLN-NNGLGPIAGGRIGKALFHLAYNKKA 153 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHH------------HHHhcCCCceeEEee-cCCCCccchhHHHHHHHHHHHHhhh
Confidence 3445555555555555544 3333322 456677788888888 5544433221 2
Q ss_pred cCccccceeccccCC-CCCcc-----ccCCCCCCCeEEEecccCcchhc-----HHHhhhccCCCcEEEeecCccc--cc
Q 043839 210 SSLKDLIFISAVHPS-SCTPD-----ILGRLPNVQTLRISGDLSYHHSG-----VSKSLCELHKLECLKLVNEGKM--WQ 276 (415)
Q Consensus 210 ~~l~~L~~L~l~~~~-~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~i--l~ 276 (415)
.+-+.|++.....+. ...+. .+..-.+|+++.+..|. .... ....+..+++|+.|++.. |.+ ..
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg--Irpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~g 230 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG--IRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEG 230 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC--cCcchhHHHHHHHHHHhCcceeeeccc-cchhhhh
Confidence 245667776665555 22222 23444678888888773 2211 223455678888888887 422 00
Q ss_pred cccccc-CCCCCCCCceEEEEEccccCCCCchhh----c--CCCCCCeEeecc-----------------CCCCCcccEE
Q 043839 277 FSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTL----E--KLPLLEVLKLKQ-----------------NSSFPLLKIL 332 (415)
Q Consensus 277 ~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l----~--~l~~L~~L~l~~-----------------~~~~~~L~~L 332 (415)
+.. +. .+... +.|+.|.+..|-+.......+ . ..|+|..|.... .+..|-|..|
T Consensus 231 S~~-La~al~~W-~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 231 SRY-LADALCEW-NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL 308 (388)
T ss_pred HHH-HHHHhccc-chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence 000 11 12233 668888888886654333221 1 357777777665 4556778888
Q ss_pred EeccC
Q 043839 333 HLKSM 337 (415)
Q Consensus 333 ~l~~~ 337 (415)
.+.+|
T Consensus 309 e~ngN 313 (388)
T COG5238 309 ERNGN 313 (388)
T ss_pred HHccC
Confidence 87777
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.36 E-value=0.00036 Score=69.72 Aligned_cols=101 Identities=30% Similarity=0.271 Sum_probs=45.4
Q ss_pred CCceEEEEEccccCC-C-CchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCcc---ceEEcCCCccCccEEEEecCc-
Q 043839 289 PTLTQLSLSNTKLME-D-PMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLE---EWTMGAGSMPKLESLILNPCA- 362 (415)
Q Consensus 289 ~~L~~L~l~~~~l~~-~-~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~---~l~~~~~~l~~L~~L~l~~c~- 362 (415)
++|++|++++|.... . ......++++|+.|.+.....++.++.+.+..+.... ........+++++.+.+..|.
T Consensus 295 ~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 295 PSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred CcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 556666666664321 1 2223334666665555432234444444444443221 111223444555554444444
Q ss_pred -------------cc-CCChhhhcCCCCCCeEEEecCChhh
Q 043839 363 -------------YL-RKLPEELWCIKNLCKLELHWPQPHY 389 (415)
Q Consensus 363 -------------~~-~~lp~~l~~l~~L~~L~l~~c~~~~ 389 (415)
.+ ..+.........++.|++..|....
T Consensus 375 ~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 375 SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred cCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccc
Confidence 33 1112112222236888888887543
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.21 E-value=0.0002 Score=57.17 Aligned_cols=83 Identities=23% Similarity=0.156 Sum_probs=60.3
Q ss_pred CCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCccc
Q 043839 285 YKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL 364 (415)
Q Consensus 285 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~ 364 (415)
... ..|+..+|++|.+. ..|+.+. ..||.++.|++++| .+.++|.++..+|.|+.|+++.|+..
T Consensus 50 ~~~-~el~~i~ls~N~fk-~fp~kft-------------~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 50 SKG-YELTKISLSDNGFK-KFPKKFT-------------IKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hCC-ceEEEEecccchhh-hCCHHHh-------------hccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccc
Confidence 344 66777788888764 3344332 34666777777887 88899999999999999999999876
Q ss_pred CCChhhhcCCCCCCeEEEec
Q 043839 365 RKLPEELWCIKNLCKLELHW 384 (415)
Q Consensus 365 ~~lp~~l~~l~~L~~L~l~~ 384 (415)
..|..+..+.++..|+..+
T Consensus 114 -~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 114 -AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred -cchHHHHHHHhHHHhcCCC
Confidence 4676666676776666654
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.97 E-value=0.015 Score=49.86 Aligned_cols=89 Identities=25% Similarity=0.190 Sum_probs=52.8
Q ss_pred CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEec
Q 043839 283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNP 360 (415)
Q Consensus 283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~ 360 (415)
.+..+ +.|..|.+.+|.++...|..-. .+|+|+.|.+.+| .+.++. ..+..||+|++|.+-+
T Consensus 59 ~lp~l-~rL~tLll~nNrIt~I~p~L~~--------------~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 59 NLPHL-PRLHTLLLNNNRITRIDPDLDT--------------FLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cCCCc-cccceEEecCCcceeeccchhh--------------hccccceEEecCc-chhhhhhcchhccCCccceeeecC
Confidence 34456 7888888888887654333222 3445555555665 344332 2356777777777777
Q ss_pred CcccCCCh---hhhcCCCCCCeEEEecCCh
Q 043839 361 CAYLRKLP---EELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 361 c~~~~~lp---~~l~~l~~L~~L~l~~c~~ 387 (415)
|+....-- -.+..+|+|+.||......
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhhH
Confidence 77543110 2355677777777776554
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.95 E-value=0.0097 Score=50.95 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=6.1
Q ss_pred CCceEEEEEcc
Q 043839 289 PTLTQLSLSNT 299 (415)
Q Consensus 289 ~~L~~L~l~~~ 299 (415)
|+|+.|+..+-
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 55666655544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.0008 Score=60.18 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=40.9
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT 182 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 182 (415)
..+++.|..+++...+ ..+..+|+.|.||.|+-|.|+++- .+..|++|+.|.|+.
T Consensus 18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK 72 (388)
T ss_pred HHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh
Confidence 4567778888887743 356889999999999999988654 356677777777665
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0054 Score=32.64 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=15.7
Q ss_pred cccEEEcCCcccccCcccccC
Q 043839 151 HLRVLNLGSAVLDLYPPGLEN 171 (415)
Q Consensus 151 ~L~~L~l~~~~~~~lp~~i~~ 171 (415)
+|++|++++|.++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888777776554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.00058 Score=61.06 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=46.3
Q ss_pred CCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCcccCCChh-----hhcCCCCCCeEEEecCChh-hHhhcccC
Q 043839 325 SFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYLRKLPE-----ELWCIKNLCKLELHWPQPH-YRCNRKSR 396 (415)
Q Consensus 325 ~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~~~lp~-----~l~~l~~L~~L~l~~c~~~-~~~~~~~~ 396 (415)
.|.+|++|+|..| .+.++. .-+.++|+|+.|.|..||-.+.-+. .+.-+|+|+.||=....++ +.+.++.+
T Consensus 61 rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~g 139 (388)
T KOG2123|consen 61 RCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRDG 139 (388)
T ss_pred HHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhcC
Confidence 3455666666666 344443 2357899999999999997765543 3566888888876554443 33334444
Q ss_pred Cccc
Q 043839 397 GLQT 400 (415)
Q Consensus 397 ~~~~ 400 (415)
+.|.
T Consensus 140 ~~PE 143 (388)
T KOG2123|consen 140 IYPE 143 (388)
T ss_pred CCCc
Confidence 4444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.19 E-value=0.0093 Score=53.03 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=27.3
Q ss_pred cccCcEEEecCC--CCCCCCCCcccCccccceeccccCCCCCccc---cCCCCCCCeEEEeccc
Q 043839 188 MQKLMHLNFGSI--TMPSPPNNYSSSLKDLIFISAVHPSSCTPDI---LGRLPNVQTLRISGDL 246 (415)
Q Consensus 188 l~~L~~L~l~~~--~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~ 246 (415)
|++|+.|.++.| .....++.....+++|++|+++++....++. +..+.+|..|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 344455555434 2233333334444666666666655222222 3344555555555553
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.12 E-value=0.011 Score=52.62 Aligned_cols=60 Identities=27% Similarity=0.168 Sum_probs=29.2
Q ss_pred CcccEEEeccC--CCccceEEcCCCccCccEEEEecCccc--CCChhhhcCCCCCCeEEEecCCh
Q 043839 327 PLLKILHLKSM--LWLEEWTMGAGSMPKLESLILNPCAYL--RKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 327 ~~L~~L~l~~~--~~l~~l~~~~~~l~~L~~L~l~~c~~~--~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
|+|++|.++.| ....+++.-...+|+|++|++++|... .+++ .+..+++|..|++..|+.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCc
Confidence 45555555555 333344444444566666666655532 1222 234455555555555553
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.12 E-value=0.0046 Score=49.59 Aligned_cols=58 Identities=21% Similarity=0.144 Sum_probs=40.6
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT 182 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 182 (415)
..++.+..+.++.. .++++.+-.+++.++.|++++|.+.++|..+..++.||.|+++.
T Consensus 52 ~~el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 52 GYELTKISLSDNGF----KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred CceEEEEecccchh----hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 44566666666666 55666667777788888888888888887776666666666654
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.0044 Score=52.96 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=48.6
Q ss_pred CceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEc--CCCccCccEEEEecCcccCCC
Q 043839 290 TLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMG--AGSMPKLESLILNPCAYLRKL 367 (415)
Q Consensus 290 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~l~~L~~L~l~~c~~~~~l 367 (415)
.++.++-+++.+......-+.+++ +++.|.+.+|..++.|.-+ -+..++|+.|+|++|+...+-
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~--------------~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLR--------------SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccc--------------hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 467777777766544444444444 4455555666666644311 235667777777777755422
Q ss_pred -hhhhcCCCCCCeEEEecCC
Q 043839 368 -PEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 368 -p~~l~~l~~L~~L~l~~c~ 386 (415)
-..+.++++|+.|.+.+-|
T Consensus 168 GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 168 GLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHHHhhhhHHHHhcCch
Confidence 2456667777777777655
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.82 E-value=0.035 Score=27.40 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=8.9
Q ss_pred CcccEEEcCCcccccCc
Q 043839 150 KHLRVLNLGSAVLDLYP 166 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp 166 (415)
++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35777777777766554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.97 E-value=0.043 Score=29.09 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=10.4
Q ss_pred CccEEEEecCcccCCChhhhc
Q 043839 352 KLESLILNPCAYLRKLPEELW 372 (415)
Q Consensus 352 ~L~~L~l~~c~~~~~lp~~l~ 372 (415)
+|++|++++|... .+|.+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3555666666443 5555443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.74 E-value=0.21 Score=39.84 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=5.0
Q ss_pred hccCCcccEEEcC
Q 043839 146 CKKFKHLRVLNLG 158 (415)
Q Consensus 146 ~~~~~~L~~L~l~ 158 (415)
|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 4445555555554
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.40 E-value=0.59 Score=37.16 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=4.3
Q ss_pred CCCccCccEEEEec
Q 043839 347 AGSMPKLESLILNP 360 (415)
Q Consensus 347 ~~~l~~L~~L~l~~ 360 (415)
+..+ +|+.+.+..
T Consensus 100 f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 100 FSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--T--EEE-TT
T ss_pred hcCC-CceEEEECC
Confidence 3344 555555543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.10 E-value=0.036 Score=47.51 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=49.7
Q ss_pred CCCCCCCCceEEEEEccccCCC-CchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE-EcCCCccCccEEEEec
Q 043839 283 SEYKFPPTLTQLSLSNTKLMED-PMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT-MGAGSMPKLESLILNP 360 (415)
Q Consensus 283 ~~~~lp~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~ 360 (415)
.+..+ +.++.|.+.+|.-.++ ..+.++ +.+++|+.|+|++|+.+++-- ..+..+++|+.|.+.+
T Consensus 120 ~L~~l-~~i~~l~l~~ck~~dD~~L~~l~-------------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 120 HLRDL-RSIKSLSLANCKYFDDWCLERLG-------------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHhcc-chhhhheeccccchhhHHHHHhc-------------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45678 8888888888864332 222222 357899999999998888543 5578899999999987
Q ss_pred CcccC
Q 043839 361 CAYLR 365 (415)
Q Consensus 361 c~~~~ 365 (415)
-+...
T Consensus 186 l~~v~ 190 (221)
T KOG3864|consen 186 LPYVA 190 (221)
T ss_pred chhhh
Confidence 76543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.70 E-value=0.44 Score=26.21 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=16.0
Q ss_pred CCcccEEEcCCcccccCccccc
Q 043839 149 FKHLRVLNLGSAVLDLYPPGLE 170 (415)
Q Consensus 149 ~~~L~~L~l~~~~~~~lp~~i~ 170 (415)
+++|++|+|++|.++.+|....
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567888888888887776543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.70 E-value=0.44 Score=26.21 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=16.0
Q ss_pred CCcccEEEcCCcccccCccccc
Q 043839 149 FKHLRVLNLGSAVLDLYPPGLE 170 (415)
Q Consensus 149 ~~~L~~L~l~~~~~~~lp~~i~ 170 (415)
+++|++|+|++|.++.+|....
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567888888888887776543
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=75.14 E-value=1.9 Score=23.69 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=7.6
Q ss_pred cCccEEEEecCccc
Q 043839 351 PKLESLILNPCAYL 364 (415)
Q Consensus 351 ~~L~~L~l~~c~~~ 364 (415)
++|+.|++++|+..
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45555555555543
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.98 E-value=0.66 Score=24.93 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=8.4
Q ss_pred CCcccEEEcCCcccc
Q 043839 149 FKHLRVLNLGSAVLD 163 (415)
Q Consensus 149 ~~~L~~L~l~~~~~~ 163 (415)
+++|++|++++|.++
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 356777777777665
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=65.73 E-value=0.031 Score=55.55 Aligned_cols=44 Identities=25% Similarity=0.043 Sum_probs=25.6
Q ss_pred eEEcCCCccCccEEEEecCcccCCChhh----h-cCCCCCCeEEEecCCh
Q 043839 343 WTMGAGSMPKLESLILNPCAYLRKLPEE----L-WCIKNLCKLELHWPQP 387 (415)
Q Consensus 343 l~~~~~~l~~L~~L~l~~c~~~~~lp~~----l-~~l~~L~~L~l~~c~~ 387 (415)
++......+.++.++++.|......+.. . .+. .++.+.++..+.
T Consensus 396 l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~ 444 (478)
T KOG4308|consen 396 LAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPI 444 (478)
T ss_pred hhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChh
Confidence 3445567777888887777644332221 1 234 777777776554
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.22 E-value=4.6 Score=22.33 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=14.2
Q ss_pred CcccEEEcCCcccccCcc
Q 043839 150 KHLRVLNLGSAVLDLYPP 167 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~ 167 (415)
.+|++|++++|.++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357888888888888775
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.51 E-value=0.49 Score=41.75 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=45.3
Q ss_pred hccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839 146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS- 224 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~- 224 (415)
+..++..++||++.+.+..+-..++.+..|..| +++ .+-...+|..++....+..+.+..+.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl----------------~~s-knq~~~~~~d~~q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRL----------------DLS-KNQIKFLPKDAKQQRETVNAASHKNNH 100 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHH----------------hcc-HhhHhhChhhHHHHHHHHHHHhhccch
Confidence 455666677777776655544444444444444 444 33334455555555555555555444
Q ss_pred CCCccccCCCCCCCeEEEecc
Q 043839 225 SCTPDILGRLPNVQTLRISGD 245 (415)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~ 245 (415)
...|.+.+..+.+++++..++
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred hhCCccccccCCcchhhhccC
Confidence 555666666666666655554
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.18 E-value=0.052 Score=53.99 Aligned_cols=181 Identities=18% Similarity=0.101 Sum_probs=84.7
Q ss_pred cCcEEEecCCCCCCCCC----CcccCccccceeccccCC-C-----CCccccCCC-CCCCeEEEeccc--CcchhcHHHh
Q 043839 190 KLMHLNFGSITMPSPPN----NYSSSLKDLIFISAVHPS-S-----CTPDILGRL-PNVQTLRISGDL--SYHHSGVSKS 256 (415)
Q Consensus 190 ~L~~L~l~~~~~~~~~p----~~i~~l~~L~~L~l~~~~-~-----~~~~~l~~l-~~L~~L~l~~~~--~~~~~~~~~~ 256 (415)
.+..|++.+|.+...-. ..+...+.|+.|++.++. + .+...+... ..++.|.+..|. ......+.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36667777555543322 235566777777777776 1 111222222 445556666553 1223344555
Q ss_pred hhccCCCcEEEeecCccccccccc--cc-CCC----CCCCCceEEEEEccccCCCCch----hhcCCCCCCeEeeccCCC
Q 043839 257 LCELHKLECLKLVNEGKMWQFSRM--IL-SEY----KFPPTLTQLSLSNTKLMEDPMP----TLEKLPLLEVLKLKQNSS 325 (415)
Q Consensus 257 l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~----~lp~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~ 325 (415)
+.....++.++++- |.+.+ ... ++ .+. .. .++++|.+.+|.++..... .+...+.
T Consensus 168 L~~~~~l~~l~l~~-n~l~~-~g~~~l~~~l~~~~~~~-~~le~L~L~~~~~t~~~c~~l~~~l~~~~~----------- 233 (478)
T KOG4308|consen 168 LEKNEHLTELDLSL-NGLIE-LGLLVLSQALESAASPL-SSLETLKLSRCGVTSSSCALLDEVLASGES----------- 233 (478)
T ss_pred HhcccchhHHHHHh-cccch-hhhHHHhhhhhhhhccc-ccHHHHhhhhcCcChHHHHHHHHHHhccch-----------
Confidence 55566666666655 32100 000 11 222 23 5667777777665432111 1122222
Q ss_pred CCcccEEEeccCCCcc----ceEEcCCCc-cCccEEEEecCcccC----CChhhhcCCCCCCeEEEecCC
Q 043839 326 FPLLKILHLKSMLWLE----EWTMGAGSM-PKLESLILNPCAYLR----KLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 326 ~~~L~~L~l~~~~~l~----~l~~~~~~l-~~L~~L~l~~c~~~~----~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.+..|++.+|..-+ .+...+..+ +.++.++++.|.+.. .++..+.+++.++.+.++..+
T Consensus 234 --~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 234 --LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred --hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 13345555542211 111222333 455666666666554 233445556666666666544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.57 E-value=11 Score=20.78 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=9.7
Q ss_pred CcccEEEcCCcccc
Q 043839 150 KHLRVLNLGSAVLD 163 (415)
Q Consensus 150 ~~L~~L~l~~~~~~ 163 (415)
++|++|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777764
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=50.60 E-value=1.4 Score=39.02 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=58.0
Q ss_pred cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839 184 LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK 262 (415)
Q Consensus 184 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 262 (415)
++........||++.| -...+-..++-++.|..|+++.+. ...|..++....++.++...| ..+..|.+.+..++
T Consensus 37 ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n---~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN---NHSQQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc---chhhCCccccccCC
Confidence 4445555666666623 233444456667788888888776 777888887778888877776 66777888888888
Q ss_pred CcEEEeec
Q 043839 263 LECLKLVN 270 (415)
Q Consensus 263 L~~L~l~~ 270 (415)
++.++...
T Consensus 113 ~k~~e~k~ 120 (326)
T KOG0473|consen 113 PKKNEQKK 120 (326)
T ss_pred cchhhhcc
Confidence 88877766
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.09 E-value=12 Score=20.87 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=9.9
Q ss_pred CcccEEEcCCcccc
Q 043839 150 KHLRVLNLGSAVLD 163 (415)
Q Consensus 150 ~~L~~L~l~~~~~~ 163 (415)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777764
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.82 E-value=15 Score=36.75 Aligned_cols=87 Identities=26% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCCCCceEEEEEccccCC-CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcC--CCccCccEEEEecCc
Q 043839 286 KFPPTLTQLSLSNTKLME-DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGA--GSMPKLESLILNPCA 362 (415)
Q Consensus 286 ~lp~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~--~~l~~L~~L~l~~c~ 362 (415)
++ +.+..+.|++|++.. +..+++ ....|+|+.|+|++|.....-..++ -....|++|.+.|||
T Consensus 216 n~-p~i~sl~lsnNrL~~Ld~~ssl-------------sq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NF-PEILSLSLSNNRLYHLDALSSL-------------SQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CC-cceeeeecccchhhchhhhhHH-------------HHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 45 677777888887632 111121 2345666677777763222111122 233457778888887
Q ss_pred ccCCCh---hhh----cCCCCCCeEEEecCC
Q 043839 363 YLRKLP---EEL----WCIKNLCKLELHWPQ 386 (415)
Q Consensus 363 ~~~~lp---~~l----~~l~~L~~L~l~~c~ 386 (415)
...+.- +-+ ...|.|..||=...+
T Consensus 282 lc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 282 LCTTFSDRSEYVSAIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred cccchhhhHHHHHHHHHhcchheeecCcccC
Confidence 665332 111 135666665544433
No 89
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=35.43 E-value=16 Score=36.35 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=15.5
Q ss_pred ccCCCccchHHHHhhc
Q 043839 17 SVMGLPFHLKVCYIYL 32 (415)
Q Consensus 17 SY~~L~~~lk~cfl~~ 32 (415)
||++|..|.|.|+||+
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 9999999999999997
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.70 E-value=33 Score=34.53 Aligned_cols=62 Identities=24% Similarity=0.094 Sum_probs=28.6
Q ss_pred CCCCcccEEEeccCCCccce---EEcCCCccCccEEEEecCcccCCChhhhcC--CCCCCeEEEecCC
Q 043839 324 SSFPLLKILHLKSMLWLEEW---TMGAGSMPKLESLILNPCAYLRKLPEELWC--IKNLCKLELHWPQ 386 (415)
Q Consensus 324 ~~~~~L~~L~l~~~~~l~~l---~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~--l~~L~~L~l~~c~ 386 (415)
..+|.+..+.+++| .+..+ ..-....|+|+.|+|++|...-.-..++.. ...|++|.+.|.|
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 34555566666655 23222 222345566666666666211111112222 3345566666655
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.24 E-value=1.8e+02 Score=18.07 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=4.5
Q ss_pred CCCceEEEE
Q 043839 288 PPTLTQLSL 296 (415)
Q Consensus 288 p~~L~~L~l 296 (415)
|+++++|.+
T Consensus 11 P~~l~~L~~ 19 (44)
T PF05725_consen 11 PSSLKSLIF 19 (44)
T ss_pred CCCCeEEEE
Confidence 344555555
Done!