Query 043839
Match_columns 415
No_of_seqs 314 out of 3422
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 99.9 3.4E-25 1.1E-29 218.7 19.6 273 99-386 29-406 (455)
2 3rgz_A Protein brassinosteroid 99.9 2E-25 6.9E-30 234.2 16.3 228 149-386 393-715 (768)
3 3rgz_A Protein brassinosteroid 99.9 3.2E-25 1.1E-29 232.7 16.5 253 121-386 317-691 (768)
4 2id5_A Lingo-1, leucine rich r 99.9 2.2E-24 7.4E-29 214.3 21.1 277 98-387 30-332 (477)
5 4fmz_A Internalin; leucine ric 99.9 7.7E-24 2.6E-28 201.5 21.0 265 98-386 42-322 (347)
6 4fcg_A Uncharacterized protein 99.9 1.8E-24 6.2E-29 204.3 14.5 211 148-384 79-310 (328)
7 2id5_A Lingo-1, leucine rich r 99.9 1.5E-23 5.2E-28 208.2 20.9 262 110-386 20-307 (477)
8 3o6n_A APL1; leucine-rich repe 99.9 6.7E-24 2.3E-28 205.3 15.4 269 99-387 44-351 (390)
9 1ogq_A PGIP-2, polygalacturona 99.9 8.2E-25 2.8E-29 205.3 8.6 236 122-386 50-302 (313)
10 3t6q_A CD180 antigen; protein- 99.9 1.9E-23 6.6E-28 213.5 18.2 249 123-384 255-532 (606)
11 4fmz_A Internalin; leucine ric 99.9 4.5E-23 1.5E-27 196.2 19.4 262 98-386 64-344 (347)
12 4eco_A Uncharacterized protein 99.9 6.5E-24 2.2E-28 218.1 14.1 254 121-386 248-577 (636)
13 3vq2_A TLR4, TOLL-like recepto 99.9 2.8E-23 9.6E-28 212.3 18.7 121 99-224 31-164 (606)
14 4eco_A Uncharacterized protein 99.9 1.4E-23 4.8E-28 215.6 16.0 270 99-387 248-599 (636)
15 3t6q_A CD180 antigen; protein- 99.9 3.5E-23 1.2E-27 211.7 17.7 142 98-245 31-189 (606)
16 3o6n_A APL1; leucine-rich repe 99.9 1.8E-22 6.3E-27 195.1 20.7 250 121-387 44-330 (390)
17 2z7x_B TOLL-like receptor 1, v 99.9 5.3E-23 1.8E-27 206.5 17.2 101 283-386 369-479 (520)
18 3v47_A TOLL-like receptor 5B a 99.9 2E-23 6.8E-28 206.0 13.5 261 116-386 25-382 (455)
19 3oja_B Anopheles plasmodium-re 99.9 5.5E-23 1.9E-27 209.8 16.3 267 101-387 52-357 (597)
20 4ecn_A Leucine-rich repeat pro 99.9 9.6E-23 3.3E-27 214.1 17.8 141 121-270 490-653 (876)
21 2z63_A TOLL-like receptor 4, v 99.9 2.8E-22 9.7E-27 203.3 20.5 102 283-386 416-529 (570)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-22 5E-27 205.2 18.0 144 232-387 350-509 (562)
23 1ogq_A PGIP-2, polygalacturona 99.9 2E-23 6.8E-28 195.9 10.6 241 100-368 50-308 (313)
24 2z7x_B TOLL-like receptor 1, v 99.9 3.2E-22 1.1E-26 200.7 20.0 110 110-224 9-126 (520)
25 4ecn_A Leucine-rich repeat pro 99.9 1.4E-22 4.9E-27 212.7 17.7 269 99-386 490-838 (876)
26 1ziw_A TOLL-like receptor 3; i 99.9 4.8E-22 1.7E-26 205.9 19.5 274 99-386 24-364 (680)
27 1o6v_A Internalin A; bacterial 99.9 1.1E-21 3.7E-26 194.3 21.1 96 284-386 261-364 (466)
28 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-22 7.5E-27 203.2 15.4 275 99-386 25-421 (549)
29 4fcg_A Uncharacterized protein 99.9 2.7E-22 9.4E-27 189.3 15.0 215 121-362 80-312 (328)
30 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-22 1.5E-26 188.2 16.1 264 102-385 35-330 (332)
31 3j0a_A TOLL-like receptor 5; m 99.9 8E-22 2.7E-26 209.0 19.5 144 98-245 22-184 (844)
32 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-21 5.2E-26 206.9 20.9 269 110-387 13-374 (844)
33 2z81_A CD282 antigen, TOLL-lik 99.9 6.3E-22 2.2E-26 199.9 16.6 279 98-386 48-508 (549)
34 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-22 1.1E-26 204.4 14.2 247 121-386 284-556 (606)
35 1xku_A Decorin; proteoglycan, 99.9 9.7E-22 3.3E-26 185.7 16.3 240 116-387 46-305 (330)
36 1o6v_A Internalin A; bacterial 99.9 3.9E-21 1.3E-25 190.2 20.7 258 100-386 46-342 (466)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-21 7.4E-26 196.6 19.1 116 103-224 34-157 (562)
38 1xku_A Decorin; proteoglycan, 99.9 6.7E-21 2.3E-25 179.9 18.1 224 150-387 31-275 (330)
39 1ziw_A TOLL-like receptor 3; i 99.9 9.1E-21 3.1E-25 196.3 19.3 266 111-386 14-340 (680)
40 3oja_B Anopheles plasmodium-re 99.9 5.6E-21 1.9E-25 194.9 17.0 252 121-387 50-336 (597)
41 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-20 1.4E-24 182.1 22.3 215 146-386 102-350 (457)
42 2z63_A TOLL-like receptor 4, v 99.9 1.5E-20 5.1E-25 190.5 19.2 278 98-386 26-407 (570)
43 2z80_A TOLL-like receptor 2, v 99.8 7.2E-21 2.5E-25 181.5 14.0 252 110-386 40-312 (353)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-20 4.6E-25 178.1 15.5 244 123-388 34-307 (332)
45 2z80_A TOLL-like receptor 2, v 99.8 6.9E-21 2.4E-25 181.6 12.4 212 151-386 53-288 (353)
46 3bz5_A Internalin-J, INLJ; leu 99.8 5.5E-20 1.9E-24 181.3 18.9 254 99-386 41-329 (457)
47 2z66_A Variable lymphocyte rec 99.8 3.8E-20 1.3E-24 172.8 14.4 230 115-386 21-259 (306)
48 2z66_A Variable lymphocyte rec 99.8 1.8E-20 6.3E-25 175.0 11.2 207 153-386 10-234 (306)
49 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-19 5.5E-24 185.0 18.6 97 289-386 469-578 (635)
50 3zyj_A Leucine-rich repeat-con 99.8 1.1E-19 3.9E-24 178.4 16.8 232 110-386 52-290 (440)
51 3zyi_A Leucine-rich repeat-con 99.8 1.6E-19 5.6E-24 177.9 17.0 226 116-386 69-301 (452)
52 1ozn_A Reticulon 4 receptor; N 99.8 7.1E-20 2.4E-24 169.2 12.0 198 110-321 20-233 (285)
53 3o53_A Protein LRIM1, AGAP0063 99.8 6.4E-21 2.2E-25 179.1 4.1 232 121-386 33-273 (317)
54 1ozn_A Reticulon 4 receptor; N 99.8 5.2E-19 1.8E-23 163.4 15.8 176 186-386 53-236 (285)
55 1wwl_A Monocyte differentiatio 99.8 5E-21 1.7E-25 179.4 1.9 188 188-386 94-307 (312)
56 3oja_A Leucine-rich immune mol 99.8 3E-20 1E-24 184.7 6.4 229 121-383 33-270 (487)
57 3g06_A SSPH2 (leucine-rich rep 99.8 5.7E-18 2E-22 172.2 22.2 243 101-387 41-296 (622)
58 1jl5_A Outer protein YOPM; leu 99.8 2.2E-18 7.6E-23 169.6 18.1 70 313-386 317-407 (454)
59 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-19 1.1E-23 167.5 8.6 210 140-388 24-250 (317)
60 3rfs_A Internalin B, repeat mo 99.8 3.5E-18 1.2E-22 156.7 12.2 196 148-375 39-246 (272)
61 2z62_A TOLL-like receptor 4, v 99.8 4.3E-18 1.5E-22 156.4 12.7 193 150-383 28-232 (276)
62 3oja_A Leucine-rich immune mol 99.8 1.5E-18 5E-23 172.5 10.0 206 148-388 32-250 (487)
63 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-19 3.8E-24 179.4 1.6 275 101-386 29-409 (461)
64 3zyj_A Leucine-rich repeat-con 99.8 1.5E-17 5E-22 163.3 16.7 209 98-322 62-288 (440)
65 1wwl_A Monocyte differentiatio 99.7 1.8E-18 6.1E-23 162.0 8.5 194 148-365 93-310 (312)
66 3zyi_A Leucine-rich repeat-con 99.7 2.4E-17 8.2E-22 162.4 16.5 209 98-322 73-299 (452)
67 3ogk_B Coronatine-insensitive 99.7 1.5E-18 5E-23 176.8 7.9 261 121-386 191-524 (592)
68 1jl5_A Outer protein YOPM; leu 99.7 4.5E-18 1.5E-22 167.4 11.2 151 150-322 91-246 (454)
69 2z62_A TOLL-like receptor 4, v 99.7 2.6E-17 8.8E-22 151.2 14.9 193 116-322 22-233 (276)
70 1z7x_W Ribonuclease inhibitor; 99.7 7.3E-20 2.5E-24 180.6 -3.8 277 101-386 86-438 (461)
71 2ast_B S-phase kinase-associat 99.7 1.2E-18 4.2E-23 164.6 3.1 173 144-321 62-255 (336)
72 1p9a_G Platelet glycoprotein I 99.7 6.1E-17 2.1E-21 149.9 14.1 96 146-245 6-110 (290)
73 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 146.2 16.0 194 150-386 16-216 (270)
74 2ca6_A RAN GTPase-activating p 99.7 1.2E-18 4.2E-23 168.0 2.4 220 143-367 25-319 (386)
75 1p9a_G Platelet glycoprotein I 99.7 8.9E-17 3E-21 148.8 14.0 186 185-387 6-207 (290)
76 4g8a_A TOLL-like receptor 4; l 99.7 1.6E-16 5.6E-21 162.6 15.9 127 233-365 443-581 (635)
77 3g06_A SSPH2 (leucine-rich rep 99.7 2.3E-16 7.8E-21 160.4 16.3 233 99-372 60-305 (622)
78 1h6u_A Internalin H; cell adhe 99.7 2E-16 7E-21 147.7 14.3 182 149-364 40-230 (308)
79 2ca6_A RAN GTPase-activating p 99.7 2.1E-18 7.1E-23 166.4 0.7 229 151-386 10-314 (386)
80 3rfs_A Internalin B, repeat mo 99.7 6.8E-17 2.3E-21 148.1 9.9 200 150-384 19-231 (272)
81 1h6u_A Internalin H; cell adhe 99.7 2E-16 6.8E-21 147.7 13.3 183 170-387 38-229 (308)
82 3ogk_B Coronatine-insensitive 99.7 7.3E-17 2.5E-21 164.2 8.7 237 144-386 186-499 (592)
83 2ast_B S-phase kinase-associat 99.7 2.8E-17 9.4E-22 155.3 4.8 209 148-361 45-282 (336)
84 2o6q_A Variable lymphocyte rec 99.7 1.4E-15 4.9E-20 139.1 15.4 174 150-365 37-219 (270)
85 4glp_A Monocyte differentiatio 99.6 9.5E-16 3.2E-20 143.2 12.6 220 121-386 63-305 (310)
86 4glp_A Monocyte differentiatio 99.6 6.9E-16 2.3E-20 144.2 10.8 176 188-386 90-283 (310)
87 2xwt_C Thyrotropin receptor; s 99.6 2.2E-15 7.4E-20 135.3 12.8 174 185-386 51-237 (239)
88 2xwt_C Thyrotropin receptor; s 99.6 2.1E-15 7.1E-20 135.4 11.9 200 116-363 26-238 (239)
89 4ay9_X Follicle-stimulating ho 99.6 3.3E-15 1.1E-19 142.1 13.4 206 150-383 30-254 (350)
90 2p1m_B Transport inhibitor res 99.6 1.6E-16 5.6E-21 161.6 4.4 282 100-387 105-518 (594)
91 3goz_A Leucine-rich repeat-con 99.6 2.7E-16 9.3E-21 150.2 4.5 219 142-364 14-297 (362)
92 3m19_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 131.9 14.0 173 150-365 14-193 (251)
93 3m19_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 131.3 14.5 167 122-321 14-187 (251)
94 3goz_A Leucine-rich repeat-con 99.6 8.3E-17 2.8E-21 153.8 -0.5 228 154-386 2-295 (362)
95 2p1m_B Transport inhibitor res 99.6 3.9E-16 1.3E-20 158.8 2.6 120 121-245 104-245 (594)
96 2o6s_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 125.7 11.7 169 153-349 10-187 (208)
97 4ezg_A Putative uncharacterize 99.5 9E-15 3.1E-19 127.2 8.7 145 147-320 41-188 (197)
98 1h6t_A Internalin B; cell adhe 99.5 3.9E-14 1.3E-18 131.0 13.2 161 121-303 45-214 (291)
99 1m9s_A Internalin B; cell inva 99.5 5.7E-14 1.9E-18 142.6 14.4 167 121-309 42-217 (605)
100 1h6t_A Internalin B; cell adhe 99.5 4.9E-14 1.7E-18 130.4 12.1 148 185-365 64-214 (291)
101 4ay9_X Follicle-stimulating ho 99.5 6.6E-14 2.2E-18 133.0 12.7 222 110-361 18-256 (350)
102 2o6s_A Variable lymphocyte rec 99.5 5.9E-14 2E-18 123.0 9.9 167 116-314 22-190 (208)
103 3cvr_A Invasion plasmid antige 99.5 6.4E-14 2.2E-18 140.8 9.8 188 150-374 59-253 (571)
104 4ezg_A Putative uncharacterize 99.5 1.7E-13 5.8E-18 119.1 10.8 152 186-386 41-192 (197)
105 1m9s_A Internalin B; cell inva 99.5 8.7E-14 3E-18 141.2 8.8 178 153-364 24-210 (605)
106 1dce_A Protein (RAB geranylger 99.4 1E-15 3.5E-20 154.4 -9.5 202 147-381 346-566 (567)
107 3cvr_A Invasion plasmid antige 99.4 1.9E-12 6.5E-17 130.1 13.6 90 289-387 140-242 (571)
108 1xeu_A Internalin C; cellular 99.4 3.9E-13 1.3E-17 122.4 6.8 142 146-302 37-185 (263)
109 4b8c_D Glucose-repressible alc 99.4 4E-13 1.4E-17 139.5 7.5 159 98-260 171-339 (727)
110 3e6j_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 113.5 10.9 148 191-386 21-170 (229)
111 1xeu_A Internalin C; cellular 99.3 4.5E-12 1.5E-16 115.3 11.7 156 148-322 17-181 (263)
112 2v9t_B SLIT homolog 2 protein 99.3 4.5E-12 1.5E-16 112.1 10.9 137 153-321 14-160 (220)
113 1dce_A Protein (RAB geranylger 99.3 4.3E-14 1.5E-18 142.5 -2.9 180 121-319 348-566 (567)
114 3e6j_A Variable lymphocyte rec 99.3 8.1E-12 2.8E-16 111.2 12.2 76 152-245 21-98 (229)
115 2xot_A Amphoterin-induced prot 99.3 3.4E-12 1.2E-16 121.7 9.8 158 153-322 21-198 (361)
116 2v70_A SLIT-2, SLIT homolog 2 99.3 6E-12 2.1E-16 111.3 10.7 141 153-321 14-161 (220)
117 2v9t_B SLIT homolog 2 protein 99.3 1.4E-11 4.8E-16 108.9 11.8 131 111-245 21-162 (220)
118 2je0_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 105.6 6.8 120 148-269 15-148 (149)
119 2ell_A Acidic leucine-rich nuc 99.3 8.3E-12 2.8E-16 105.3 8.8 122 147-270 21-156 (168)
120 2je0_A Acidic leucine-rich nuc 99.3 6.5E-12 2.2E-16 103.8 7.7 124 187-321 15-148 (149)
121 4b8c_D Glucose-repressible alc 99.3 5.9E-13 2E-17 138.2 1.4 143 183-337 218-369 (727)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 2.5E-11 8.6E-16 107.2 11.7 137 104-245 15-163 (220)
123 2xot_A Amphoterin-induced prot 99.3 1.4E-11 4.9E-16 117.3 10.7 160 104-270 22-198 (361)
124 2ell_A Acidic leucine-rich nuc 99.2 3.4E-11 1.2E-15 101.6 9.6 80 188-270 23-104 (168)
125 3sb4_A Hypothetical leucine ri 99.2 8.3E-11 2.9E-15 110.5 11.6 92 287-381 225-327 (329)
126 1a9n_A U2A', U2A'; complex (nu 99.1 7E-11 2.4E-15 100.5 7.4 120 146-270 15-149 (176)
127 1w8a_A SLIT protein; signaling 99.1 1.6E-10 5.5E-15 99.7 9.2 91 153-245 11-112 (192)
128 4fdw_A Leucine rich hypothetic 99.0 1.1E-08 3.7E-13 98.6 18.0 239 121-384 112-379 (401)
129 1w8a_A SLIT protein; signaling 99.0 7.5E-10 2.6E-14 95.5 8.8 116 192-320 11-133 (192)
130 2wfh_A SLIT homolog 2 protein 99.0 1.5E-09 5.2E-14 93.6 10.7 17 153-169 13-29 (193)
131 1ds9_A Outer arm dynein; leuci 99.0 6.3E-11 2.2E-15 102.8 1.1 101 142-245 40-150 (198)
132 2wfh_A SLIT homolog 2 protein 99.0 2E-09 6.7E-14 92.9 9.9 51 192-245 13-64 (193)
133 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.4E-16 107.9 -4.7 127 146-302 14-153 (198)
134 3sb4_A Hypothetical leucine ri 99.0 4.2E-09 1.4E-13 98.8 12.0 113 234-358 201-328 (329)
135 1a9n_A U2A', U2A'; complex (nu 98.9 7.4E-10 2.5E-14 94.1 5.8 118 121-245 18-150 (176)
136 2o6r_A Variable lymphocyte rec 98.9 8.3E-09 2.8E-13 87.5 11.4 106 121-245 27-134 (177)
137 2o6r_A Variable lymphocyte rec 98.9 7.5E-09 2.6E-13 87.8 10.6 126 152-305 9-140 (177)
138 2a5y_B CED-4; apoptosis; HET: 98.8 2E-09 6.7E-14 108.3 3.1 71 15-88 368-473 (549)
139 3g39_A Variable lymphocyte rec 98.7 3.9E-08 1.3E-12 82.9 9.4 92 152-245 11-112 (170)
140 2r9u_A Variable lymphocyte rec 98.7 4.3E-08 1.5E-12 82.9 9.5 90 153-245 15-115 (174)
141 4fdw_A Leucine rich hypothetic 98.7 1.6E-07 5.5E-12 90.4 14.4 163 189-362 203-381 (401)
142 3un9_A NLR family member X1; l 98.7 5.6E-10 1.9E-14 106.6 -4.1 63 234-303 154-225 (372)
143 2ra8_A Uncharacterized protein 98.7 5.5E-09 1.9E-13 99.0 2.2 62 325-386 250-318 (362)
144 3g39_A Variable lymphocyte rec 98.5 2.7E-07 9.3E-12 77.6 8.4 99 191-302 11-115 (170)
145 3un9_A NLR family member X1; l 98.5 1.5E-08 5.2E-13 96.6 0.3 117 188-311 125-261 (372)
146 3sfz_A APAF-1, apoptotic pepti 98.5 8.1E-08 2.8E-12 105.7 6.0 69 15-86 369-452 (1249)
147 2r9u_A Variable lymphocyte rec 98.5 3.5E-07 1.2E-11 77.3 8.4 51 192-245 15-67 (174)
148 2ra8_A Uncharacterized protein 98.5 1.2E-07 4.1E-12 89.8 5.5 156 209-386 168-341 (362)
149 4fs7_A Uncharacterized protein 98.4 3.1E-06 1.1E-10 81.2 14.0 94 283-384 271-375 (394)
150 2ifg_A High affinity nerve gro 98.3 1.2E-06 4.1E-11 82.5 8.0 86 146-246 27-114 (347)
151 3e4g_A ATP synthase subunit S, 98.2 1E-06 3.4E-11 73.9 5.1 85 289-387 61-151 (176)
152 4fs7_A Uncharacterized protein 98.2 7.3E-06 2.5E-10 78.6 11.6 92 283-380 292-393 (394)
153 2ifg_A High affinity nerve gro 98.1 4.2E-06 1.4E-10 78.7 7.9 39 207-245 50-90 (347)
154 4gt6_A Cell surface protein; l 98.1 0.00012 4E-09 70.1 18.0 251 123-388 65-370 (394)
155 1vt4_I APAF-1 related killer D 98.1 1.1E-06 3.7E-11 92.1 3.1 60 15-79 360-436 (1221)
156 1z6t_A APAF-1, apoptotic prote 98.0 3.5E-06 1.2E-10 85.3 5.9 66 15-83 369-449 (591)
157 4gt6_A Cell surface protein; l 97.9 0.0002 6.7E-09 68.5 15.4 263 101-384 65-387 (394)
158 1io0_A Tropomodulin; LRR prote 97.9 2.3E-06 8E-11 72.9 0.6 42 141-182 27-74 (185)
159 4h09_A Hypothetical leucine ri 97.8 0.00054 1.8E-08 65.0 16.6 96 283-383 235-341 (379)
160 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.8E-10 67.5 3.1 59 328-387 62-126 (176)
161 1io0_A Tropomodulin; LRR prote 97.5 2.6E-05 9E-10 66.3 2.2 114 121-246 35-162 (185)
162 3rw6_A Nuclear RNA export fact 97.3 0.00015 5.3E-09 65.1 4.2 74 146-219 166-257 (267)
163 3rw6_A Nuclear RNA export fact 97.1 0.00013 4.5E-09 65.5 2.1 80 289-384 170-260 (267)
164 4h09_A Hypothetical leucine ri 96.7 0.053 1.8E-06 51.0 15.9 55 98-160 67-123 (379)
165 1pgv_A TMD-1, tropomodulin TMD 93.5 0.024 8.1E-07 48.1 1.6 113 142-270 33-166 (197)
166 1pgv_A TMD-1, tropomodulin TMD 91.5 0.063 2.2E-06 45.5 1.6 15 231-245 66-80 (197)
167 3rfe_A Platelet glycoprotein I 89.0 0.62 2.1E-05 36.4 5.4 14 154-167 12-27 (130)
168 3rfe_A Platelet glycoprotein I 86.7 0.4 1.4E-05 37.5 2.9 35 287-321 29-63 (130)
169 3lqv_P Splicing factor 3B subu 24.8 20 0.00069 21.0 0.5 9 33-41 30-38 (39)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.4e-25 Score=218.68 Aligned_cols=273 Identities=16% Similarity=0.113 Sum_probs=213.2
Q ss_pred CCceeEEEEEeCCCCCcc-CCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccC
Q 043839 99 LANVKRCFILKDLTEFFP-LEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFH 174 (415)
Q Consensus 99 ~~~~r~l~l~~~~~~~~~-~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~ 174 (415)
+..++++.+. ++....+ +..+ +++|++|.+.++... ..+.+..|.++++|++|++++|.++ ..|..++++++
T Consensus 29 ~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 29 PAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCccCEEEec-CCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 4678899988 7766655 3444 899999999988763 2445677899999999999999988 55888999999
Q ss_pred CceEecCc----------ccccccccCcEEEecCCCCCCCCCCc-ccCccccceeccccCC--CCCccccC---------
Q 043839 175 LKYLKLIT----------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS--SCTPDILG--------- 232 (415)
Q Consensus 175 L~~L~l~~----------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~--~~~~~~l~--------- 232 (415)
|++|++++ ..++++++|++|++++|.+....|.. ++.+++|++|++.++. ...+..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 99999998 12778999999999977777766776 7899999999999887 33333332
Q ss_pred -------------------------CCCCCCeEEEecccCcchhcHHHhhhcc---C-----------------------
Q 043839 233 -------------------------RLPNVQTLRISGDLSYHHSGVSKSLCEL---H----------------------- 261 (415)
Q Consensus 233 -------------------------~l~~L~~L~l~~~~~~~~~~~~~~l~~l---~----------------------- 261 (415)
.+++|++|++++| ...+..+..+... +
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 3467888888888 4556666655443 3
Q ss_pred -------------CCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--
Q 043839 262 -------------KLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-- 322 (415)
Q Consensus 262 -------------~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-- 322 (415)
+|+.|++++ + ++ .| ++..+ ++|++|++++|.+.+..+..++.+++|+.|++++
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSK-S------KIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCS-S------CCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCcccccccccccCceEEEecC-c------cccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 444454444 2 22 45 78889 9999999999999877788899999999999997
Q ss_pred --------CCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 323 --------NSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 --------~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
...+++|++|++++| .++.+ |..++.+++|++|++++|...+..+..+..+++|+.|++++++
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 456789999999999 55655 6678999999999999998775334556889999999998754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2e-25 Score=234.21 Aligned_cols=228 Identities=20% Similarity=0.163 Sum_probs=146.6
Q ss_pred CCcccEEEcCCcccc-cCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839 149 FKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS 219 (415)
Q Consensus 149 ~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 219 (415)
+++|++|++++|.++ .+|..++++++|++|++++ ..++++++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 455666666666655 5666666666666666665 3455666666666665555556666666666666666
Q ss_pred cccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCCCCCCCceE
Q 043839 220 AVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQ 293 (415)
Q Consensus 220 l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~ 293 (415)
+.++. +.+|..++.+++|+.|++++| ...+.+|..++.+++|+.|++++ | ++ +| .+..+ ++|+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~-N------~l~~~~p~~l~~l-~~L~~ 542 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNN--RLTGEIPKWIGRLENLAILKLSN-N------SFSGNIPAELGDC-RSLIW 542 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSS--CCCSCCCGGGGGCTTCCEEECCS-S------CCEEECCGGGGGC-TTCCE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCC--ccCCcCChHHhcCCCCCEEECCC-C------cccCcCCHHHcCC-CCCCE
Confidence 66666 455666666666666666666 45555666666666666666666 4 22 55 66666 67777
Q ss_pred EEEEccccCCCCchhh----------------------------------------------------------------
Q 043839 294 LSLSNTKLMEDPMPTL---------------------------------------------------------------- 309 (415)
Q Consensus 294 L~l~~~~l~~~~~~~l---------------------------------------------------------------- 309 (415)
|++++|.+.+.+|..+
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 7777766654444332
Q ss_pred ------cCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcC
Q 043839 310 ------EKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWC 373 (415)
Q Consensus 310 ------~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~ 373 (415)
+.+++|+.|++++ .+.+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 2345566666665 344566777777777555577777777777777777777777777777777
Q ss_pred CCCCCeEEEecCC
Q 043839 374 IKNLCKLELHWPQ 386 (415)
Q Consensus 374 l~~L~~L~l~~c~ 386 (415)
+++|++|++++|+
T Consensus 703 l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 703 LTMLTEIDLSNNN 715 (768)
T ss_dssp CCCCSEEECCSSE
T ss_pred CCCCCEEECcCCc
Confidence 7777777777653
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.2e-25 Score=232.75 Aligned_cols=253 Identities=22% Similarity=0.185 Sum_probs=162.4
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCcc-CCceEecCc----------------
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLF-HLKYLKLIT---------------- 182 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~-~L~~L~l~~---------------- 182 (415)
+++|++|.+.++... ..+....+.++++|++|++++|.++ .+|..+.++. +|++|++++
T Consensus 317 l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 317 CSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp CTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 455555555554431 1333344666777777777777666 6666666555 555555554
Q ss_pred ------------------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEE
Q 043839 183 ------------------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRI 242 (415)
Q Consensus 183 ------------------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l 242 (415)
..++++++|++|++++|.+.+.+|..++.+++|++|++.++. +.+|..++.+++|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 123334444444444333333444444444444444444444 344444444455555555
Q ss_pred ecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeE
Q 043839 243 SGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVL 318 (415)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 318 (415)
++| ...+.+|..+..+++|+.|++++ + ++ +| ++..+ ++|++|++++|.+.+.+|..++.+++|+.|
T Consensus 474 ~~N--~l~~~~p~~l~~l~~L~~L~L~~-N------~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 474 DFN--DLTGEIPSGLSNCTNLNWISLSN-N------RLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp CSS--CCCSCCCGGGGGCTTCCEEECCS-S------CCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred cCC--cccCcCCHHHhcCCCCCEEEccC-C------ccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 444 23334444555555555555554 3 22 67 78888 888888888888877888888888888888
Q ss_pred eecc---C------------------------------------------------------------------------
Q 043839 319 KLKQ---N------------------------------------------------------------------------ 323 (415)
Q Consensus 319 ~l~~---~------------------------------------------------------------------------ 323 (415)
++++ .
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 8875 0
Q ss_pred -----CCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 324 -----SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 324 -----~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
..+++|++|++++|...+.+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|.
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 013568889999996666889899999999999999999999999999999999999999864
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=214.27 Aligned_cols=277 Identities=17% Similarity=0.091 Sum_probs=215.8
Q ss_pred CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCccc-ccCcc
Q 043839 98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPG-LENLF 173 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~ 173 (415)
.+..++.+.+. ++....+.. .+ +++|++|.+.++.. ..+.+..|.++++|++|++++|.++.+|.. +.+++
T Consensus 30 ~~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNENIV----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCcEEECC-CCccceECHhHccCCCCCCEEECCCCcc----CEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 35567888888 766665533 33 88899999988876 455567788889999999999988877754 67888
Q ss_pred CCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc-cccCCCCCCCeEEEe
Q 043839 174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP-DILGRLPNVQTLRIS 243 (415)
Q Consensus 174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~ 243 (415)
+|++|++++ ..+.++++|++|++++|.+....|..++.+++|++|++.++. ..++ ..+..+++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 999999887 456778889999998777666667778888999999998888 5444 457888999999998
Q ss_pred cccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839 244 GDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 322 (415)
++ ......+..+..+++|+.|++++ +..+.. +| ..... .+|++|++++|.++...+..++.+++|+.|++++
T Consensus 185 ~n--~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~---~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 185 HL--NINAIRDYSFKRLYRLKVLEISH-WPYLDT---MTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp SC--CCCEECTTCSCSCTTCCEEEEEC-CTTCCE---ECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CC--cCcEeChhhcccCcccceeeCCC-Cccccc---cCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 88 34444455677888999999887 311110 45 55556 6999999999998766667899999999999997
Q ss_pred ----------CCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 323 ----------NSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 323 ----------~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
...+++|++|++++| .++.+ |..+..+++|+.|++++|....-.+..+..+++|+.|+++++|-
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 456789999999999 55555 56788999999999999987754445678899999999997663
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.7e-24 Score=201.48 Aligned_cols=265 Identities=18% Similarity=0.197 Sum_probs=202.2
Q ss_pred CCCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCc
Q 043839 98 SLANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLK 176 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~ 176 (415)
....++++.+. +.....++... +++|++|.+.++... .+.+ +..+++|++|++++|.++.+| .+.++++|+
T Consensus 42 ~l~~L~~L~l~-~~~i~~~~~~~~~~~L~~L~l~~n~i~----~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVA-GEKVASIQGIEYLTNLEYLNLNGNQIT----DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred hcccccEEEEe-CCccccchhhhhcCCccEEEccCCccc----cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 35568888888 77766565544 999999999998773 3322 889999999999999988776 588999999
Q ss_pred eEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcc
Q 043839 177 YLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYH 249 (415)
Q Consensus 177 ~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 249 (415)
+|++++ +.+..+++|++|++++|.....++. +..+++|++|++.++. ...+. ++.+++|+.|++++|. .
T Consensus 114 ~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~--l 189 (347)
T 4fmz_A 114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ--I 189 (347)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--C
T ss_pred EEECcCCcccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--c
Confidence 999988 5577889999999996655555444 8899999999999988 44444 7889999999999883 2
Q ss_pred hhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-------
Q 043839 250 HSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------- 322 (415)
Q Consensus 250 ~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------- 322 (415)
..++. +..+++|+.+++++ +.+-. ++.+..+ ++|++|++++|.+++.. . ++.+++|+.|++++
T Consensus 190 -~~~~~-~~~l~~L~~L~l~~-n~l~~----~~~~~~~-~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 190 -EDISP-LASLTSLHYFTAYV-NQITD----ITPVANM-TRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp -CCCGG-GGGCTTCCEEECCS-SCCCC----CGGGGGC-TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCG
T ss_pred -ccccc-ccCCCccceeeccc-CCCCC----CchhhcC-CcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCCh
Confidence 33333 77888999999887 31100 2235567 88888888888875433 2 77888888888877
Q ss_pred -CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 323 -NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 -~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
...+++|++|++++| .++.++ .+..+++|+.|++++|...+..|..+..+++|+.|++++|+
T Consensus 260 ~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 456778888888888 566653 46788888888888888776667778888888888888876
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.8e-24 Score=204.26 Aligned_cols=211 Identities=22% Similarity=0.247 Sum_probs=138.0
Q ss_pred cCCcccEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839 148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA 220 (415)
Q Consensus 148 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 220 (415)
..+++++|+++++.++.+|..++++++|++|++++ ..++++++|++|++++|.+. .+|..++.+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34778888888888888887777777777666665 23445555555555534333 55555666666666666
Q ss_pred ccCC--CCCccccCC---------CCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CCCC
Q 043839 221 VHPS--SCTPDILGR---------LPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SEYK 286 (415)
Q Consensus 221 ~~~~--~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~ 286 (415)
.+|. +.+|..++. +++|++|++++| .. ..+|..+..+++|+.|++++ + ++ +| .+..
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n--~l-~~lp~~l~~l~~L~~L~L~~-N------~l~~l~~~l~~ 227 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT--GI-RSLPASIANLQNLKSLKIRN-S------PLSALGPAIHH 227 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--CC-CCCCGGGGGCTTCCEEEEES-S------CCCCCCGGGGG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCC--Cc-CcchHhhcCCCCCCEEEccC-C------CCCcCchhhcc
Confidence 5544 444444332 555666665555 12 24444555555555555554 3 11 44 4445
Q ss_pred CCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCC
Q 043839 287 FPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRK 366 (415)
Q Consensus 287 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~ 366 (415)
+ ++|++|++++|.+.+..|..+ +.+++|++|++++|..++.+|..++.+++|+.|++++|+.++.
T Consensus 228 l-~~L~~L~Ls~n~~~~~~p~~~--------------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 228 L-PKLEELDLRGCTALRNYPPIF--------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp C-TTCCEEECTTCTTCCBCCCCT--------------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred C-CCCCEEECcCCcchhhhHHHh--------------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 5 555555555555444444433 3456677777789988889999999999999999999999999
Q ss_pred ChhhhcCCCCCCeEEEec
Q 043839 367 LPEELWCIKNLCKLELHW 384 (415)
Q Consensus 367 lp~~l~~l~~L~~L~l~~ 384 (415)
+|.++.++++|+.+++..
T Consensus 293 iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCGGGGGSCTTCEEECCG
T ss_pred ccHHHhhccCceEEeCCH
Confidence 999999999999998875
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=208.19 Aligned_cols=262 Identities=16% Similarity=0.114 Sum_probs=220.5
Q ss_pred CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEecCc------
Q 043839 110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLIT------ 182 (415)
Q Consensus 110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~------ 182 (415)
+.....++....++++.|.+.++.. ..+.+..|.++++|++|++++|.++ ..|..+.++++|++|++++
T Consensus 20 ~~~l~~ip~~~~~~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 20 RKRFVAVPEGIPTETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp SCCCSSCCSCCCTTCSEEECCSSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCcCcCCCCCCCCCcEEECCCCcc----ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 3444446665578999999999988 5566678999999999999999999 5588899999999999998
Q ss_pred --ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhh
Q 043839 183 --PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC 258 (415)
Q Consensus 183 --~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 258 (415)
..++++++|++|++++|.+....|..+..+++|++|++.++. ...+..+..+++|+.|++++| ......+..+.
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~ 173 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEALS 173 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--CCSSCCHHHHT
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--cCcccChhHhc
Confidence 346789999999999887777778889999999999999988 444567899999999999998 45555566788
Q ss_pred ccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CC
Q 043839 259 ELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NS 324 (415)
Q Consensus 259 ~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~ 324 (415)
.+++|+.|++++ + ++ ++ .+..+ ++|+.|++++|...+..+.......+|+.|++++ ..
T Consensus 174 ~l~~L~~L~l~~-n------~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 174 HLHGLIVLRLRH-L------NINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp TCTTCCEEEEES-C------CCCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ccCCCcEEeCCC-C------cCcEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 999999999998 4 22 33 67889 9999999999987777777666777999999987 35
Q ss_pred CCCcccEEEeccCCCccceE-EcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 325 SFPLLKILHLKSMLWLEEWT-MGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 325 ~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.+++|++|++++| .++.++ ..+..+++|+.|++++|...+..|..+..+++|+.|++++|.
T Consensus 246 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 246 HLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 6789999999999 566665 457899999999999999887678889999999999999875
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6.7e-24 Score=205.26 Aligned_cols=269 Identities=17% Similarity=0.124 Sum_probs=159.9
Q ss_pred CCceeEEEEEeCCCCCccCCCC---CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccC
Q 043839 99 LANVKRCFILKDLTEFFPLEHS---DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFH 174 (415)
Q Consensus 99 ~~~~r~l~l~~~~~~~~~~~~~---~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~ 174 (415)
...++++.+. +.....++... +++|++|.+.++.. ..+.+..+..+++|++|++++|.++.+ |..++++++
T Consensus 44 l~~l~~l~l~-~~~l~~l~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEE-SCEESEECTHHHHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEec-CCchhhCChhHhcccccCcEEECCCCcc----cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 3456666666 55555455433 66677777766665 344444566677777777777766644 344566677
Q ss_pred CceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecc
Q 043839 175 LKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGD 245 (415)
Q Consensus 175 L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 245 (415)
|++|++++ ..++++++|++|++++|.+....|..++.+++|++|++.++. ..++ ++.+++|+.|+++++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 196 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccc
Confidence 77777666 124566667777776555554445556666777777766665 3322 334455555555544
Q ss_pred cCcchhcHHHhhhccCCCcEEEeecCccc----------cccc-----cc--ccCCCCCCCCceEEEEEccccCCCCchh
Q 043839 246 LSYHHSGVSKSLCELHKLECLKLVNEGKM----------WQFS-----RM--ILSEYKFPPTLTQLSLSNTKLMEDPMPT 308 (415)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~i----------l~~l-----~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~ 308 (415)
. .. .+...++|+.|++++ +.+ ++.| ++ .+++..+ ++|++|++++|.+.+..+..
T Consensus 197 ~--l~-----~~~~~~~L~~L~l~~-n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 197 L--LS-----TLAIPIAVEELDASH-NSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp C--CS-----EEECCSSCSEEECCS-SCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGG
T ss_pred c--cc-----ccCCCCcceEEECCC-CeeeeccccccccccEEECCCCCCcccHHHcCC-CCccEEECCCCcCCCcChhH
Confidence 1 11 011122333333333 111 0100 11 2355666 77777777777776666667
Q ss_pred hcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCe
Q 043839 309 LEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCK 379 (415)
Q Consensus 309 l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~ 379 (415)
++.+++|+.|++++ ...+++|++|++++| .++.+|..++.+++|+.|++++|+.. .+| +..+++|+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~ 343 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKN 343 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSE
T ss_pred ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccc-eeC--chhhccCCE
Confidence 77777777777776 335677777777777 56666666677777777777777654 343 566778888
Q ss_pred EEEecCCh
Q 043839 380 LELHWPQP 387 (415)
Q Consensus 380 L~l~~c~~ 387 (415)
|+++++|-
T Consensus 344 L~l~~N~~ 351 (390)
T 3o6n_A 344 LTLSHNDW 351 (390)
T ss_dssp EECCSSCE
T ss_pred EEcCCCCc
Confidence 88877663
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=8.2e-25 Score=205.31 Aligned_cols=236 Identities=16% Similarity=0.151 Sum_probs=151.3
Q ss_pred CceeEEEeecCCCccccccchHHHhccCCcccEEEcCC-cccc-cCcccccCccCCceEecCc--------ccccccccC
Q 043839 122 MYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGS-AVLD-LYPPGLENLFHLKYLKLIT--------PLLKLMQKL 191 (415)
Q Consensus 122 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L 191 (415)
.+++.|.+.++.... ....+..+.++++|++|++++ +.+. .+|..++++++|++|++++ ..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 578888888877621 113456788888888888885 6666 7777777777777777765 334555566
Q ss_pred cEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCC-CCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839 192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLP-NVQTLRISGDLSYHHSGVSKSLCELHKLECLKL 268 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (415)
++|++++|.+...+|..++.+++|++|++.++. +.+|..++.++ +|+.|++++| ...+..|..+..++ |+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCC-CSEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC--eeeccCChHHhCCc-ccEEEC
Confidence 666665555555555555556666666665555 35555555555 5566666555 33344444555444 555555
Q ss_pred ecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE
Q 043839 269 VNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT 344 (415)
Q Consensus 269 ~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~ 344 (415)
++ + ++ .| .+..+ ++|+.|++++|.+++..+. + ..+++|++|++++|...+.+|
T Consensus 205 s~-N------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~--------------~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 205 SR-N------MLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGK-V--------------GLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp CS-S------EEEECCGGGCCTT-SCCSEEECCSSEECCBGGG-C--------------CCCTTCCEEECCSSCCEECCC
T ss_pred cC-C------cccCcCCHHHhcC-CCCCEEECCCCceeeecCc-c--------------cccCCCCEEECcCCcccCcCC
Confidence 54 2 11 33 44445 5555555555554322221 2 345677788888885545788
Q ss_pred EcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 345 MGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 345 ~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
..++.+++|+.|++++|...+.+|.. ..+++|+.+++.++|
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 88899999999999999988888865 778999999998876
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.9e-23 Score=213.54 Aligned_cols=249 Identities=22% Similarity=0.140 Sum_probs=160.9
Q ss_pred ceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEE
Q 043839 123 YLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHL 194 (415)
Q Consensus 123 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L 194 (415)
+++.+.+.++.. ..+.+..|.++++|++|++++|.++.+|..++++++|++|++++ ..++++++|++|
T Consensus 255 ~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHYF----FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCCC----SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred ceeEEEeecCcc----CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 788888888776 45556668889999999999999888888888899999999987 356778889999
Q ss_pred EecCCCCCCCCCCc-ccCccccceeccccCC-CCC---ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEee
Q 043839 195 NFGSITMPSPPNNY-SSSLKDLIFISAVHPS-SCT---PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLV 269 (415)
Q Consensus 195 ~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 269 (415)
++++|.....+|.. ++.+++|++|++.++. ... +..++.+++|++|++++| ...+..+..+..+++|+.|+++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC--SCEEECTTTTTTCTTCSEEECT
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC--cCCcCCHHHhcCCccCCeEECC
Confidence 99877766666654 7888889999888887 332 566788888888888888 4555556677788888888887
Q ss_pred cCccccccccccc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-------------CCCCCcccEEEe
Q 043839 270 NEGKMWQFSRMIL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-------------NSSFPLLKILHL 334 (415)
Q Consensus 270 ~~~~il~~l~Llp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-------------~~~~~~L~~L~l 334 (415)
+ +.+-. ..| ++..+ ++|+.|++++|.+.+..+..++.+++|+.|++++ ...+++|++|++
T Consensus 409 ~-n~l~~---~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 409 F-TRLKV---KDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp T-CCEEC---CTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred C-CcCCC---cccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 7 31100 011 24455 5555555555555444445555555555555544 112344555555
Q ss_pred ccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEec
Q 043839 335 KSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHW 384 (415)
Q Consensus 335 ~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~ 384 (415)
++| .++.+ |..++.+++|+.|++++|...+..|..+.++++| .|++++
T Consensus 484 s~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 484 SFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred CCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 555 23322 2344455555555555554444334444444444 444433
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=4.5e-23 Score=196.18 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=215.0
Q ss_pred CCCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCc
Q 043839 98 SLANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLK 176 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~ 176 (415)
....++.+.+. ++....++... +++|++|.+.++... .+ ..+.++++|++|++++|.+..++. +..+++|+
T Consensus 64 ~~~~L~~L~l~-~n~i~~~~~~~~l~~L~~L~L~~n~i~----~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 64 YLTNLEYLNLN-GNQITDISPLSNLVKLTNLYIGTNKIT----DI--SALQNLTNLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp GCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCC----CC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hcCCccEEEcc-CCccccchhhhcCCcCCEEEccCCccc----Cc--hHHcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence 45678999998 77766565544 999999999998774 32 358999999999999999998877 88999999
Q ss_pred eEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCc
Q 043839 177 YLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSY 248 (415)
Q Consensus 177 ~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 248 (415)
+|++++ +.+..+++|++|++++|.. ..++. ++.+++|++|++.++. ..++. +..+++|+.|+++++.
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-- 210 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-- 210 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC--
Confidence 999998 5688899999999995554 44444 8899999999999998 55555 8899999999999983
Q ss_pred chhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----
Q 043839 249 HHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---- 322 (415)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---- 322 (415)
..+. +. +..+++|+.|++++ + ++ +|.+..+ ++|++|++++|.++. .+.++.+++|+.|++++
T Consensus 211 l~~~-~~-~~~~~~L~~L~l~~-n------~l~~~~~~~~l-~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 211 ITDI-TP-VANMTRLNSLKIGN-N------KITDLSPLANL-SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp CCCC-GG-GGGCTTCCEEECCS-S------CCCCCGGGTTC-TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCC
T ss_pred CCCC-ch-hhcCCcCCEEEccC-C------ccCCCcchhcC-CCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccC
Confidence 3332 22 78899999999998 4 22 4456788 999999999998864 36788999999999998
Q ss_pred ----CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 323 ----NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 ----~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
...+++|++|++++|......+..++.+++|+.|++++|+..+ ++. +..+++|++|++++|+
T Consensus 279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEESSSCC-
T ss_pred CChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC-hhhhhccceeehhhhc
Confidence 4567899999999995544555668899999999999999775 444 8889999999999987
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.5e-24 Score=218.07 Aligned_cols=254 Identities=13% Similarity=0.093 Sum_probs=120.4
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cc--cCcccccCc------cCCceEecCc-------c-
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LD--LYPPGLENL------FHLKYLKLIT-------P- 183 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~lp~~i~~l------~~L~~L~l~~-------~- 183 (415)
+++|++|.+.++.. ....+..+.++++|++|++++|. ++ .+|..++++ ++|++|++++ .
T Consensus 248 l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPN----LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTT----CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred cCCCCEEEecCCcC----CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 35555555555544 22233445555555555555554 44 355555444 5555555555 1
Q ss_pred -cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCC-CCeEEEecccCcchhcHHHhhhcc
Q 043839 184 -LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPN-VQTLRISGDLSYHHSGVSKSLCEL 260 (415)
Q Consensus 184 -~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~~l 260 (415)
.++++++|++|++++|.+.+.+| .++.+++|++|++.++. ..+|..++.+++ |++|++++| ... .+|..+..+
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N--~l~-~lp~~~~~~ 399 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN--KLK-YIPNIFDAK 399 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS--CCS-SCCSCCCTT
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC--cCc-ccchhhhhc
Confidence 34455555555555444443455 45555555555555554 444444555555 555555554 122 344433332
Q ss_pred C--CCcEEEeecCcccccc--------------------c-----cc--cc--CCCCCCCCceEEEEEccccCCCCchh-
Q 043839 261 H--KLECLKLVNEGKMWQF--------------------S-----RM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPT- 308 (415)
Q Consensus 261 ~--~L~~L~l~~~~~il~~--------------------l-----~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~- 308 (415)
+ +|+.|++++ +.+-.. | ++ +| .+..+ ++|++|++++|.++ .+|..
T Consensus 400 ~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~ 476 (636)
T 4eco_A 400 SVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSINLMGNMLT-EIPKNS 476 (636)
T ss_dssp CSSCEEEEECCS-SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT-CCCSEEECCSSCCS-BCCSSS
T ss_pred ccCccCEEECcC-CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC-CCCCEEECCCCCCC-CcCHHH
Confidence 2 455555544 210000 0 11 33 22234 55555555555544 22221
Q ss_pred hcC-------CCCCCeEeecc---------C--CCCCcccEEEeccCCCccceEEcCCCccCccEEEEe------cCccc
Q 043839 309 LEK-------LPLLEVLKLKQ---------N--SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILN------PCAYL 364 (415)
Q Consensus 309 l~~-------l~~L~~L~l~~---------~--~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~------~c~~~ 364 (415)
+.. +++|+.|++++ . ..+++|++|++++| .++.+|..++.+++|+.|+++ +|...
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred hccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence 111 12555555554 1 14455555555555 333455555555555555553 33344
Q ss_pred CCChhhhcCCCCCCeEEEecCC
Q 043839 365 RKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 365 ~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
+.+|..+..+++|+.|++++|.
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSC
T ss_pred ccChHHHhcCCCCCEEECCCCc
Confidence 4555555555555555555544
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.8e-23 Score=212.33 Aligned_cols=121 Identities=17% Similarity=0.052 Sum_probs=78.0
Q ss_pred CCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccC
Q 043839 99 LANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFH 174 (415)
Q Consensus 99 ~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~ 174 (415)
+..++.+.+. ++....++. .+ +++||+|.+.++.. ..+.+..|.++++|++|++++|.++.+ |..++++++
T Consensus 31 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 4556777776 655554443 22 67777777777665 444455677777777777777777644 666777777
Q ss_pred CceEecCc--------ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC
Q 043839 175 LKYLKLIT--------PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS 224 (415)
Q Consensus 175 L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~ 224 (415)
|++|++++ ..++++++|++|++++|.+.. .+|..++++++|++|++.++.
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 77777766 345666677777777555443 456666666666666666554
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.4e-23 Score=215.59 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=185.2
Q ss_pred CCceeEEEEEeCCC-CCccCCCC--CCceeEEEeecCC-Ccccccc-chHHHhccC------CcccEEEcCCcccccCcc
Q 043839 99 LANVKRCFILKDLT-EFFPLEHS--DMYLQSFLNHSSE-SDHLAGI-DCENFCKKF------KHLRVLNLGSAVLDLYPP 167 (415)
Q Consensus 99 ~~~~r~l~l~~~~~-~~~~~~~~--~~~Lr~L~~~~~~-~~~~~~~-~~~~~~~~~------~~L~~L~l~~~~~~~lp~ 167 (415)
....+.+.+. ++. ...++..+ +++|++|.+.++. . .. ..+..+.++ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l----~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 248 LKDLTDVEVY-NCPNLTKLPTFLKALPEMQLINVACNRGI----SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp CTTCCEEEEE-CCTTCSSCCTTTTTCSSCCEEECTTCTTS----CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred cCCCCEEEec-CCcCCccChHHHhcCCCCCEEECcCCCCC----ccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 4568889888 654 33466655 8899999999887 4 22 344555554 788888888888877877
Q ss_pred --cccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccc-cceeccccCC-CCCccccCCCC-
Q 043839 168 --GLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKD-LIFISAVHPS-SCTPDILGRLP- 235 (415)
Q Consensus 168 --~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~-~~~~~~l~~l~- 235 (415)
.++++++|++|++++ +.++++++|++|++++|.+. .+|..++.+++ |++|++.++. ..+|..++.++
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l 401 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhccc
Confidence 788888888888777 23445566666666644433 55555666665 6666666555 44444444332
Q ss_pred -CCCeEEEecccCcchhcHHHhhh-------------------------------ccCCCcEEEeecCccccccccc--c
Q 043839 236 -NVQTLRISGDLSYHHSGVSKSLC-------------------------------ELHKLECLKLVNEGKMWQFSRM--I 281 (415)
Q Consensus 236 -~L~~L~l~~~~~~~~~~~~~~l~-------------------------------~l~~L~~L~l~~~~~il~~l~L--l 281 (415)
+|+.|++++| ...+..|..+. .+++|+.|++++ + ++ +
T Consensus 402 ~~L~~L~Ls~N--~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N------~l~~i 472 (636)
T 4eco_A 402 SVMSAIDFSYN--EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-N------MLTEI 472 (636)
T ss_dssp SCEEEEECCSS--CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS-S------CCSBC
T ss_pred CccCEEECcCC--cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC-C------CCCCc
Confidence 4555555444 23333333333 355555555555 3 22 5
Q ss_pred c-CCCC-CC------CCceEEEEEccccCCCCchhhc--CCCCCCeEeecc---------CCCCCcccEEEecc------
Q 043839 282 L-SEYK-FP------PTLTQLSLSNTKLMEDPMPTLE--KLPLLEVLKLKQ---------NSSFPLLKILHLKS------ 336 (415)
Q Consensus 282 p-~~~~-lp------~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~---------~~~~~~L~~L~l~~------ 336 (415)
| .... .+ ++|+.|++++|.++ .+|..+. .+++|+.|++++ ...+++|++|++++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTC
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCccccc
Confidence 5 3222 20 29999999999987 6777776 999999999998 34578999999954
Q ss_pred CCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 337 MLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 337 ~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
|...+.+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+-
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 545668888999999999999999988 78998765 8999999999974
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.5e-23 Score=211.67 Aligned_cols=142 Identities=15% Similarity=0.016 Sum_probs=100.0
Q ss_pred CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCcc
Q 043839 98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLF 173 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~ 173 (415)
.+..++.+.+. ++....+.. .+ +++||+|.+.++.. ..+.+..|.++++|++|++++|.++ ..|..+++++
T Consensus 31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEcc-CCccCcCChhHhccCccceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 35567888887 766665533 33 78888888888876 4555677888888888888888887 5577788888
Q ss_pred CCceEecCc--------ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC-C-CCccccCCCCCCC--eE
Q 043839 174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS-S-CTPDILGRLPNVQ--TL 240 (415)
Q Consensus 174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~--~L 240 (415)
+|++|++++ ..++++++|++|++++|.+.. ..|. +..+++|++|++.++. . ..+..++.+++|+ .|
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 888888887 445677888888888666554 2344 3347888888888776 3 3345566667776 55
Q ss_pred EEecc
Q 043839 241 RISGD 245 (415)
Q Consensus 241 ~l~~~ 245 (415)
++++|
T Consensus 185 ~l~~n 189 (606)
T 3t6q_A 185 NLNGN 189 (606)
T ss_dssp ECTTC
T ss_pred ecCCC
Confidence 55555
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.8e-22 Score=195.14 Aligned_cols=250 Identities=15% Similarity=0.073 Sum_probs=204.7
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCc--------ccccccccC
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLIT--------PLLKLMQKL 191 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~--------~~i~~l~~L 191 (415)
.+++|.+.+.++.. ..+.+..+..+++|++|++++|.++.++ ..+..+++|++|++++ ..++++++|
T Consensus 44 l~~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCch----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 78999999999887 5677778999999999999999999554 5889999999999998 447889999
Q ss_pred cEEEecCCCCCCCCCCc-ccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839 192 MHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL 268 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (415)
++|++++|.+. .+|.. ++.+++|++|++.++. ..+ +..++.+++|++|++++|. ... + .+..+++|+.|++
T Consensus 120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~-~--~~~~l~~L~~L~l 193 (390)
T 3o6n_A 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSB-C--CGGGCTTCSEEEC
T ss_pred CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCc-c--ccccccccceeec
Confidence 99999966554 66665 5899999999999998 444 5568999999999999983 332 2 3667899999999
Q ss_pred ecCccc--------cccccc-------ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------C
Q 043839 269 VNEGKM--------WQFSRM-------ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------N 323 (415)
Q Consensus 269 ~~~~~i--------l~~l~L-------lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~ 323 (415)
++ +.+ ++.+.+ +| ...+ ++|+.|++++|.+++ ++.++.+++|+.|++++ .
T Consensus 194 ~~-n~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~-~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 194 SY-NLLSTLAIPIAVEELDASHNSINVVR-GPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp CS-SCCSEEECCSSCSEEECCSSCCCEEE-CCCC-SSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-ccccccCCCCcceEEECCCCeeeecc-cccc-ccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHc
Confidence 88 422 222211 12 1123 789999999998864 36789999999999998 4
Q ss_pred CCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 324 SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 324 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
..+++|++|++++| .++.++...+.+++|+.|++++|... .+|..+..+++|+.|++++|+-
T Consensus 269 ~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 269 VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc
Confidence 56789999999998 78889988899999999999999765 7888888999999999999873
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=5.3e-23 Score=206.47 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=76.8
Q ss_pred CCCCCCCCceEEEEEccccCCCCch-hhcCCCCCCeEeecc-------CCCC-CcccEEEeccCCCccceEEcCCCccCc
Q 043839 283 SEYKFPPTLTQLSLSNTKLMEDPMP-TLEKLPLLEVLKLKQ-------NSSF-PLLKILHLKSMLWLEEWTMGAGSMPKL 353 (415)
Q Consensus 283 ~~~~lp~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~-------~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L 353 (415)
.+..+ ++|++|++++|.+.+.++. .+..+++|+.|++++ ...+ ++|++|++++| .++.+|..+..+++|
T Consensus 369 ~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L 446 (520)
T 2z7x_B 369 MTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEAL 446 (520)
T ss_dssp HHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTC
T ss_pred HHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCC
Confidence 45666 7777777777776553444 366677777777776 1223 58899999988 677888888899999
Q ss_pred cEEEEecCcccCCChhh-hcCCCCCCeEEEecCC
Q 043839 354 ESLILNPCAYLRKLPEE-LWCIKNLCKLELHWPQ 386 (415)
Q Consensus 354 ~~L~l~~c~~~~~lp~~-l~~l~~L~~L~l~~c~ 386 (415)
+.|++++|... .+|.. +..+++|+.|+++++|
T Consensus 447 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 447 QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 99999999776 67865 8889999999999866
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2e-23 Score=205.96 Aligned_cols=261 Identities=16% Similarity=0.070 Sum_probs=205.0
Q ss_pred cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cC-cccccCccCCceEecCc--------ccc
Q 043839 116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LY-PPGLENLFHLKYLKLIT--------PLL 185 (415)
Q Consensus 116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~--------~~i 185 (415)
++. ..+++++|.+.++.. ....+..+.++++|++|++++|.+. .+ |..+.++++|++|++++ ..+
T Consensus 25 lp~-l~~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 25 VPE-LPAHVNYVDLSLNSI----AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp CCC-CCTTCCEEECCSSCC----CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred CCC-CCCccCEEEecCCcc----CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 444 468999999999987 5566778999999999999999986 44 56789999999999998 467
Q ss_pred cccccCcEEEecCCCCCCCCCCc--ccCccccceeccccCC-CCC-ccc-cCCCCCCCeEEEecccCcchhcHHHhhhc-
Q 043839 186 KLMQKLMHLNFGSITMPSPPNNY--SSSLKDLIFISAVHPS-SCT-PDI-LGRLPNVQTLRISGDLSYHHSGVSKSLCE- 259 (415)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~p~~--i~~l~~L~~L~l~~~~-~~~-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~- 259 (415)
+++++|++|++++|.+.+.+|.. ++.+++|++|++.++. ... |.. ++.+++|++|++++|. ..+..+..+..
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l 177 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNF 177 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC--BSCCCTTTSGGG
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc--ccccChhhhhcc
Confidence 88999999999977776655554 8999999999999998 444 554 7899999999999983 44433433333
Q ss_pred ---------------------------------cCCCcEEEeecCccc----------------cccccc----------
Q 043839 260 ---------------------------------LHKLECLKLVNEGKM----------------WQFSRM---------- 280 (415)
Q Consensus 260 ---------------------------------l~~L~~L~l~~~~~i----------------l~~l~L---------- 280 (415)
+++|+.|++++ +.+ ++.+.+
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCC-CcccccchhhhhccccccceeeEeecccccccccc
Confidence 35677777776 322 111100
Q ss_pred ----c----c-CCC--CCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCC
Q 043839 281 ----I----L-SEY--KFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLW 339 (415)
Q Consensus 281 ----l----p-~~~--~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~ 339 (415)
+ + .+. .. ++|+.|++++|.+.+..+..++.+++|+.|++++ ...+++|++|++++| .
T Consensus 257 ~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~ 334 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-F 334 (455)
T ss_dssp TCCSSCCCCTTTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred chhhhccCcccccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-c
Confidence 0 0 011 13 5899999999998878888899999999999987 446789999999999 5
Q ss_pred ccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 340 LEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 340 l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
++.+ +..++.+++|+.|++++|...+..|..+..+++|++|++++|.
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 6665 4668899999999999998877668889999999999999875
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.5e-23 Score=209.77 Aligned_cols=267 Identities=17% Similarity=0.120 Sum_probs=153.2
Q ss_pred ceeEEEEEeCCCCCccCCCC---CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCc
Q 043839 101 NVKRCFILKDLTEFFPLEHS---DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLK 176 (415)
Q Consensus 101 ~~r~l~l~~~~~~~~~~~~~---~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~ 176 (415)
..+.+.+. ++....++... +++|++|.+.++.. ..+.+..|..+++|++|++++|.++.+| ..++++++|+
T Consensus 52 ~l~~l~l~-~~~l~~lp~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 52 NQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCSEEEES-SCEESEECTHHHHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CceEEEee-CCCCCCcCHHHHccCCCCcEEECCCCCC----CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 34555555 44444344332 55666666665554 3333445556666666666666655333 3345566666
Q ss_pred eEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccC
Q 043839 177 YLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLS 247 (415)
Q Consensus 177 ~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 247 (415)
+|++++ ..++++++|++|++++|.+....|..++.+++|++|++.++. ..++ ++.+++|+.|+++++.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~- 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL- 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC-
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc-
Confidence 666655 123555666666666554444444455566666666665555 2222 3334445555444441
Q ss_pred cchhcHHHhhhccCCCcEEEeecCccc----------cccc-----cc--ccCCCCCCCCceEEEEEccccCCCCchhhc
Q 043839 248 YHHSGVSKSLCELHKLECLKLVNEGKM----------WQFS-----RM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLE 310 (415)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~i----------l~~l-----~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~ 310 (415)
.. .+....+|+.|++++ +.+ |+.| ++ .+++..+ ++|+.|++++|.+.+..|..++
T Consensus 204 -l~-----~l~~~~~L~~L~ls~-n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 204 -LS-----TLAIPIAVEELDASH-NSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp -CS-----EEECCTTCSEEECCS-SCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGT
T ss_pred -cc-----cccCCchhheeeccC-CcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHhc
Confidence 11 011222334444333 111 1111 11 2256667 7888888888877766677777
Q ss_pred CCCCCCeEeecc---------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEE
Q 043839 311 KLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLE 381 (415)
Q Consensus 311 ~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~ 381 (415)
.+++|+.|++++ ...+++|++|++++| .+..+|..++.+++|+.|++++|.... +| +..+++|+.|+
T Consensus 276 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~ 351 (597)
T 3oja_B 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLT 351 (597)
T ss_dssp TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEE
T ss_pred CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEE
Confidence 888888888876 344778888888887 566777777778888888888887653 33 56678888888
Q ss_pred EecCCh
Q 043839 382 LHWPQP 387 (415)
Q Consensus 382 l~~c~~ 387 (415)
++++|-
T Consensus 352 l~~N~~ 357 (597)
T 3oja_B 352 LSHNDW 357 (597)
T ss_dssp CCSSCE
T ss_pred eeCCCC
Confidence 888774
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=9.6e-23 Score=214.06 Aligned_cols=141 Identities=11% Similarity=0.034 Sum_probs=79.3
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cc--cCcccccCcc-------CCceEecCc-------c
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LD--LYPPGLENLF-------HLKYLKLIT-------P 183 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~lp~~i~~l~-------~L~~L~l~~-------~ 183 (415)
+++|+.|.+.++.. ....+..+.++++|++|++++|. ++ .+|..++++. +|++|++++ .
T Consensus 490 L~~L~~L~Ls~N~l----~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 490 LKDLTDVELYNCPN----MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp CTTCCEEEEESCTT----CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred CCCCCEEECcCCCC----CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 45666666666554 22334556666666666666665 55 3555555544 666666665 2
Q ss_pred --cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCC-CCeEEEecccCcchhcHHHhhhc
Q 043839 184 --LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPN-VQTLRISGDLSYHHSGVSKSLCE 259 (415)
Q Consensus 184 --~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~~ 259 (415)
.++++++|++|++++|.+. .+| .++.+++|++|++.++. ..+|..+..+++ |+.|++++| ... .+|..+..
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N--~L~-~lp~~~~~ 640 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN--KLK-YIPNIFNA 640 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS--CCC-SCCSCCCT
T ss_pred hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC--CCC-cCchhhhc
Confidence 3555666666666644443 555 56666666666666665 555555666666 666666665 222 44444443
Q ss_pred cC--CCcEEEeec
Q 043839 260 LH--KLECLKLVN 270 (415)
Q Consensus 260 l~--~L~~L~l~~ 270 (415)
++ +|+.|++++
T Consensus 641 ~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 641 KSVYVMGSVDFSY 653 (876)
T ss_dssp TCSSCEEEEECCS
T ss_pred cccCCCCEEECcC
Confidence 32 255555555
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=203.25 Aligned_cols=102 Identities=22% Similarity=0.149 Sum_probs=70.6
Q ss_pred CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCCccce-EEcCCCc
Q 043839 283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLWLEEW-TMGAGSM 350 (415)
Q Consensus 283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~l~~l-~~~~~~l 350 (415)
.+..+ ++|++|++++|.+.+..+..++.+++|++|++++ ...+++|++|++++| .++.+ |..++.+
T Consensus 416 ~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 493 (570)
T 2z63_A 416 VFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSL 493 (570)
T ss_dssp TTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred hhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcc
Confidence 34556 6677777777766656666677777777777765 234567778888777 44444 5667778
Q ss_pred cCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 351 PKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 351 ~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
++|+.|++++|...+..|..+.++++|+.|+++++|
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 888888888887665555667778888888888744
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.5e-22 Score=205.24 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=107.7
Q ss_pred CCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc-----cc-CCCCCCCCceEEEEEccccCCCC
Q 043839 232 GRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM-----IL-SEYKFPPTLTQLSLSNTKLMEDP 305 (415)
Q Consensus 232 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L-----lp-~~~~lp~~L~~L~l~~~~l~~~~ 305 (415)
+.+++|++|++++| ...+..|..+..+++|+.|++++ + ++ +| .+..+ ++|+.|++++|.+++..
T Consensus 350 ~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~-N------~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 350 PSPSSFTFLNFTQN--VFTDSVFQGCSTLKRLQTLILQR-N------GLKNFFKVALMTKNM-SSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCEEECCSS--CCCTTTTTTCCSCSSCCEEECCS-S------CCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCC
T ss_pred cCCCCceEEECCCC--ccccchhhhhcccCCCCEEECCC-C------CcCCcccchhhhcCC-CCCCEEECCCCcCCCcc
Confidence 44556666666665 34444555666666666666665 3 22 34 57778 88888888888887634
Q ss_pred ch-hhcCCCCCCeEeecc-------CCCC-CcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhh-hcCCC
Q 043839 306 MP-TLEKLPLLEVLKLKQ-------NSSF-PLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEE-LWCIK 375 (415)
Q Consensus 306 ~~-~l~~l~~L~~L~l~~-------~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~-l~~l~ 375 (415)
+. .+..+++|+.|++++ ...+ ++|++|++++| .++.+|..+..+++|+.|++++|... .+|.. +..++
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 497 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence 43 577788888888887 2334 68999999999 78899988889999999999999877 68876 88999
Q ss_pred CCCeEEEecCCh
Q 043839 376 NLCKLELHWPQP 387 (415)
Q Consensus 376 ~L~~L~l~~c~~ 387 (415)
+|+.|+++++|-
T Consensus 498 ~L~~L~l~~N~~ 509 (562)
T 3a79_B 498 SLQYIWLHDNPW 509 (562)
T ss_dssp TCCCEECCSCCB
T ss_pred CCCEEEecCCCc
Confidence 999999998763
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2e-23 Score=195.87 Aligned_cols=241 Identities=14% Similarity=0.084 Sum_probs=197.7
Q ss_pred CceeEEEEEeCCCCC---ccCCCC--CCceeEEEeec-CCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCc
Q 043839 100 ANVKRCFILKDLTEF---FPLEHS--DMYLQSFLNHS-SESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENL 172 (415)
Q Consensus 100 ~~~r~l~l~~~~~~~---~~~~~~--~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l 172 (415)
.+++.+.+. ++... .++..+ +++|++|.+.+ +.. ....+..+.++++|++|++++|.++ .+|..+.++
T Consensus 50 ~~l~~L~L~-~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLS-GLNLPKPYPIPSSLANLPYLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEE-CCCCSSCEECCGGGGGCTTCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECC-CCCccCCcccChhHhCCCCCCeeeCCCCCcc----cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 679999999 77665 355555 99999999995 655 3345677899999999999999998 999999999
Q ss_pred cCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCcc-ccceeccccCC--CCCccccCCCCCCCeEE
Q 043839 173 FHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLK-DLIFISAVHPS--SCTPDILGRLPNVQTLR 241 (415)
Q Consensus 173 ~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~l~~~~--~~~~~~l~~l~~L~~L~ 241 (415)
++|++|++++ ..++++++|++|++++|.+.+.+|..++.++ +|++|++.++. +..|..++.++ |+.|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 9999999998 5678899999999998887778999999998 99999999998 57888888887 99999
Q ss_pred EecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeec
Q 043839 242 ISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK 321 (415)
Q Consensus 242 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 321 (415)
+++| ...+..+..+..+++|+.|++++ +.+-.. +|.+..+ ++|++|++++|.+++..|..++.+++|+.|+
T Consensus 204 Ls~N--~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~---~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~-- 274 (313)
T 1ogq_A 204 LSRN--MLEGDASVLFGSDKNTQKIHLAK-NSLAFD---LGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN-- 274 (313)
T ss_dssp CCSS--EEEECCGGGCCTTSCCSEEECCS-SEECCB---GGGCCCC-TTCCEEECCSSCCEECCCGGGGGCTTCCEEE--
T ss_pred CcCC--cccCcCCHHHhcCCCCCEEECCC-Cceeee---cCccccc-CCCCEEECcCCcccCcCChHHhcCcCCCEEE--
Confidence 9999 56667888899999999999998 521100 3366778 9999999999999878888887766655555
Q ss_pred cCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCCh
Q 043839 322 QNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLP 368 (415)
Q Consensus 322 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp 368 (415)
+++|...+.+|.. +.+++|+.|++.+|+.+...|
T Consensus 275 ------------Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 275 ------------VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ------------CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ------------CcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 4677444466654 889999999999998655444
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=200.72 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=64.0
Q ss_pred CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc------
Q 043839 110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT------ 182 (415)
Q Consensus 110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~------ 182 (415)
++....++....++++.|.+.++.. ....+..|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 9 ~n~l~~ip~~~~~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 9 KNGLIHVPKDLSQKTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp TSCCSSCCCSCCTTCSEEECCSSCC----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCcccccccccccccEEECCCCcc----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec
Confidence 3333334433356666666666665 344445566666666666666666633 55666666666666666
Q ss_pred ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC
Q 043839 183 PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS 224 (415)
Q Consensus 183 ~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~ 224 (415)
+.. .+++|++|++++|.+.. .+|..++.+++|++|++.++.
T Consensus 85 p~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 85 SCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred Ccc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 112 55666666666555443 455666666666666666654
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.4e-22 Score=212.74 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=180.0
Q ss_pred CCceeEEEEEeCCC-CCccCCCC--CCceeEEEeecCC-Ccccccc-chHHHhccC-------CcccEEEcCCcccccCc
Q 043839 99 LANVKRCFILKDLT-EFFPLEHS--DMYLQSFLNHSSE-SDHLAGI-DCENFCKKF-------KHLRVLNLGSAVLDLYP 166 (415)
Q Consensus 99 ~~~~r~l~l~~~~~-~~~~~~~~--~~~Lr~L~~~~~~-~~~~~~~-~~~~~~~~~-------~~L~~L~l~~~~~~~lp 166 (415)
...++.+.+. .+. ...++..+ +++|+.|.+.++. . .. ..|..+.++ ++|++|++++|.++.+|
T Consensus 490 L~~L~~L~Ls-~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l----sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 490 LKDLTDVELY-NCPNMTQLPDFLYDLPELQSLNIACNRGI----SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp CTTCCEEEEE-SCTTCCSCCGGGGGCSSCCEEECTTCTTS----CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred CCCCCEEECc-CCCCCccChHHHhCCCCCCEEECcCCCCc----ccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence 4678899998 654 44466555 9999999999987 4 22 344445544 49999999999999999
Q ss_pred c--cccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccc-cceeccccCC-CCCccccCCCCC
Q 043839 167 P--GLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKD-LIFISAVHPS-SCTPDILGRLPN 236 (415)
Q Consensus 167 ~--~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~-~~~~~~l~~l~~ 236 (415)
. .++++++|++|++++ +.++++++|+.|++++|.+. .+|..+..+++ |++|++.++. ..+|..+..++.
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~ 643 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred ChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence 8 899999999999998 56778889999999966655 88888999998 9999999888 667766655543
Q ss_pred --CCeEEEecccCcchh----------------------------cHHHhhh-ccCCCcEEEeecCccccccccc--cc-
Q 043839 237 --VQTLRISGDLSYHHS----------------------------GVSKSLC-ELHKLECLKLVNEGKMWQFSRM--IL- 282 (415)
Q Consensus 237 --L~~L~l~~~~~~~~~----------------------------~~~~~l~-~l~~L~~L~l~~~~~il~~l~L--lp- 282 (415)
|+.|++++|. ..+ .+|..+. .+++|+.|++++ | ++ +|
T Consensus 644 ~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~-N------~L~~ip~ 714 (876)
T 4ecn_A 644 YVMGSVDFSYNK--IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN-N------LMTSIPE 714 (876)
T ss_dssp SCEEEEECCSSC--TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS-C------CCSCCCT
T ss_pred CCCCEEECcCCc--CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC-C------cCCccCh
Confidence 7777776662 222 2222222 344444444444 2 12 44
Q ss_pred CCCCCC-------CCceEEEEEccccCCCCchhhc--CCCCCCeEeecc---------CCCCCcccEEEecc------CC
Q 043839 283 SEYKFP-------PTLTQLSLSNTKLMEDPMPTLE--KLPLLEVLKLKQ---------NSSFPLLKILHLKS------ML 338 (415)
Q Consensus 283 ~~~~lp-------~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~---------~~~~~~L~~L~l~~------~~ 338 (415)
++...+ ++|+.|++++|.++ .+|..+. .+++|+.|++++ ...+++|+.|++++ |.
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccc
Confidence 222210 26677777777665 5555555 667777777665 23455677777655 33
Q ss_pred CccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 339 WLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 339 ~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|+|++|+
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred ccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 3445666666677777777777766 56665543 567777777765
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4.8e-22 Score=205.94 Aligned_cols=274 Identities=17% Similarity=0.082 Sum_probs=197.0
Q ss_pred CCceeEEEEEeCCCCCccCCC-C--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcc-cccCccC
Q 043839 99 LANVKRCFILKDLTEFFPLEH-S--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPP-GLENLFH 174 (415)
Q Consensus 99 ~~~~r~l~l~~~~~~~~~~~~-~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~ 174 (415)
+.+++++.+. ++....++.. + +++|++|.+.++.. ....+..+.++++|++|++++|.++.+|. .++++++
T Consensus 24 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSSCC----CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCCcc----CccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 4678888888 7666555543 3 78899999888876 45556778888999999999988887776 5888889
Q ss_pred CceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc-ccc--CCCCCCCeEEE
Q 043839 175 LKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP-DIL--GRLPNVQTLRI 242 (415)
Q Consensus 175 L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l--~~l~~L~~L~l 242 (415)
|++|++++ ..++++++|++|++++|......|..++++++|++|++.++. ...+ ..+ ..+++|+.|++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 99999887 357788889999998777777777778888899999888887 4333 333 24678888888
Q ss_pred ecccCcchhcHHHhhhccCC---------------------------CcEEEeecCccccccccc---cc-CCCCCC-CC
Q 043839 243 SGDLSYHHSGVSKSLCELHK---------------------------LECLKLVNEGKMWQFSRM---IL-SEYKFP-PT 290 (415)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~---------------------------L~~L~l~~~~~il~~l~L---lp-~~~~lp-~~ 290 (415)
++| ...+..+..+..+.+ |+.|++++ + ++ .| ++..++ ++
T Consensus 179 ~~n--~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~-n------~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 179 SSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN-S------QLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TTC--CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT-S------CCCEECTTTTGGGGGSC
T ss_pred CCC--cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC-C------cccccChhHhhccCcCC
Confidence 887 343334444444444 44444444 2 12 34 555551 23
Q ss_pred ceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCcc-----ceEE----cCCCcc
Q 043839 291 LTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLE-----EWTM----GAGSMP 351 (415)
Q Consensus 291 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~-----~l~~----~~~~l~ 351 (415)
|++|++++|.+.+..+..++.+++|++|++++ ...+++|++|++++|..-. .+|. .++.++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 88888888888766677788888888888876 4556788888888763221 2332 567888
Q ss_pred CccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 352 KLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 352 ~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
+|+.|++++|...+..|..+..+++|++|++++|.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 88888888888776666778888888888888764
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.1e-21 Score=194.29 Aligned_cols=96 Identities=23% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--------CCCCCcccEEEeccCCCccceEEcCCCccCccE
Q 043839 284 EYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLES 355 (415)
Q Consensus 284 ~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 355 (415)
+..+ ++|+.|++++|.+.+.. . ++.+++|+.|++++ ...+++|++|++++| .+..++. ++.+++|+.
T Consensus 261 ~~~l-~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 261 LSGL-TKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQR 335 (466)
T ss_dssp GTTC-TTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCE
T ss_pred hhcC-CCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCCCchh-hccCccCCE
Confidence 4455 66666666666654322 2 56666666666665 344567777777777 3443332 567777777
Q ss_pred EEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 356 LILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 356 L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
|++++|...+ ++ .+..+++|+.|++++|+
T Consensus 336 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 336 LFFYNNKVSD-VS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EECCSSCCCC-CG-GGTTCTTCCEEECCSSC
T ss_pred eECCCCccCC-ch-hhccCCCCCEEeCCCCc
Confidence 7777776543 33 57777888888887765
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.2e-22 Score=203.23 Aligned_cols=275 Identities=17% Similarity=0.146 Sum_probs=201.0
Q ss_pred CCceeEEEEEeCCCCCccC-CCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcc-cccCccC
Q 043839 99 LANVKRCFILKDLTEFFPL-EHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPP-GLENLFH 174 (415)
Q Consensus 99 ~~~~r~l~l~~~~~~~~~~-~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~ 174 (415)
...++++.+. ++....+. ..+ +++||+|.+.++.. ....+..|.++++|++|++++|.++.+|. .++++++
T Consensus 25 ~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCccEEECc-CCccCccChhhhhcCCcccEEECCCCCc----CccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 4578899988 77665453 334 89999999999887 55666778999999999999999996655 4899999
Q ss_pred CceEecCc---------ccccccccCcEEEecCCCCCCCCC-CcccCccccceeccccCC--CCCccccCCCCCCCeEEE
Q 043839 175 LKYLKLIT---------PLLKLMQKLMHLNFGSITMPSPPN-NYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRI 242 (415)
Q Consensus 175 L~~L~l~~---------~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l 242 (415)
|++|++++ ..++++++|++|++++|.....+| ..++.+++|++|++.++. ...|..++.+++|++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 99999988 346778999999999777566665 578999999999999988 557888999999999999
Q ss_pred ecccCcchhcHHHhh-hccCCCcEEEeecCccc----------------cccccc------------cc-CC--------
Q 043839 243 SGDLSYHHSGVSKSL-CELHKLECLKLVNEGKM----------------WQFSRM------------IL-SE-------- 284 (415)
Q Consensus 243 ~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~i----------------l~~l~L------------lp-~~-------- 284 (415)
..+ ....++..+ ..+++|+.|++++ +.+ ++.+.+ ++ .+
T Consensus 180 ~~n---~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 180 HLS---ESAFLLEIFADILSSVRYLELRD-TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp ECS---BSTTHHHHHHHSTTTBSEEEEES-CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred ccC---cccccchhhHhhcccccEEEccC-CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 988 334455544 4689999999987 321 000000 00 00
Q ss_pred ----------------------C-----------------------------CCCCCceEEEEEccccCCCCchhh-cCC
Q 043839 285 ----------------------Y-----------------------------KFPPTLTQLSLSNTKLMEDPMPTL-EKL 312 (415)
Q Consensus 285 ----------------------~-----------------------------~lp~~L~~L~l~~~~l~~~~~~~l-~~l 312 (415)
. .. ++|+.|++++|.+. .+|..+ +.+
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~-~ip~~~~~~l 333 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LVPCSFSQHL 333 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS-TTCCEEEEESSCCC-CCCHHHHHHC
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc-ccceEEEeccCccc-cCCHHHHhcC
Confidence 0 01 34555666665553 344444 568
Q ss_pred CCCCeEeecc-------------CCCCCcccEEEeccCCCccceE---EcCCCccCccEEEEecCcccCCChhhhcCCCC
Q 043839 313 PLLEVLKLKQ-------------NSSFPLLKILHLKSMLWLEEWT---MGAGSMPKLESLILNPCAYLRKLPEELWCIKN 376 (415)
Q Consensus 313 ~~L~~L~l~~-------------~~~~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~ 376 (415)
++|++|++++ .+.+++|++|++++| .++.++ ..++.+++|+.|++++|... .+|..+..+++
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~ 411 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTT
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccc
Confidence 8888888876 245678888888888 555554 24678888888888888665 67877778888
Q ss_pred CCeEEEecCC
Q 043839 377 LCKLELHWPQ 386 (415)
Q Consensus 377 L~~L~l~~c~ 386 (415)
|++|++++|.
T Consensus 412 L~~L~Ls~N~ 421 (549)
T 2z81_A 412 MRFLNLSSTG 421 (549)
T ss_dssp CCEEECTTSC
T ss_pred ccEEECCCCC
Confidence 8888888765
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.7e-22 Score=189.31 Aligned_cols=215 Identities=17% Similarity=0.147 Sum_probs=173.8
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcE
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMH 193 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~ 193 (415)
.++++.|.+.++.. .. ++..+.++++|++|++++|.++.+|..++++++|++|++++ ..++++++|++
T Consensus 80 ~~~l~~L~L~~n~l----~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPL----PQ-FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCC----SS-CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCc----hh-cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 46777777777766 22 23446668888888888888888888888888888888887 56778889999
Q ss_pred EEecCCCCCCCCCCcccC---------ccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCC
Q 043839 194 LNFGSITMPSPPNNYSSS---------LKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKL 263 (415)
Q Consensus 194 L~l~~~~~~~~~p~~i~~---------l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 263 (415)
|++++|...+.+|..++. +++|++|++.++. ..+|..++.+++|++|++++| ....+|..+..+++|
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N---~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS---PLSALGPAIHHLPKL 231 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS---CCCCCCGGGGGCTTC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC---CCCcCchhhccCCCC
Confidence 999877888888887765 9999999999998 888989999999999999998 334577789999999
Q ss_pred cEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccc
Q 043839 264 ECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEE 342 (415)
Q Consensus 264 ~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~ 342 (415)
+.|++++ +.+... +| ++..+ ++|++|++++|.+.+..|..++.+++ |++|++++|..++.
T Consensus 232 ~~L~Ls~-n~~~~~---~p~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~--------------L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 232 EELDLRG-CTALRN---YPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQ--------------LEKLDLRGCVNLSR 292 (328)
T ss_dssp CEEECTT-CTTCCB---CCCCTTCC-CCCCEEECTTCTTCCBCCTTGGGCTT--------------CCEEECTTCTTCCC
T ss_pred CEEECcC-Ccchhh---hHHHhcCC-CCCCEEECCCCCchhhcchhhhcCCC--------------CCEEeCCCCCchhh
Confidence 9999998 421111 77 88899 99999999999888888877766555 45555588888899
Q ss_pred eEEcCCCccCccEEEEecCc
Q 043839 343 WTMGAGSMPKLESLILNPCA 362 (415)
Q Consensus 343 l~~~~~~l~~L~~L~l~~c~ 362 (415)
+|..++.+++|+.+.+..+.
T Consensus 293 iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGG
T ss_pred ccHHHhhccCceEEeCCHHH
Confidence 99999999999999887654
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=4.5e-22 Score=188.18 Aligned_cols=264 Identities=17% Similarity=0.172 Sum_probs=151.7
Q ss_pred eeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEec
Q 043839 102 VKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKL 180 (415)
Q Consensus 102 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l 180 (415)
.+.+.+. +.....++....++++.|.+.++.. ..+.+..+.++++|++|++++|.++ ..|..++++++|++|++
T Consensus 35 l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 35 LRVVQCS-DLGLKAVPKEISPDTTLLDLQNNDI----SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp TTEEECC-SSCCSSCCSCCCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCEEECC-CCCccccCCCCCCCCeEEECCCCcC----CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4455555 5554445554466778888777766 4444556777888888888888777 34666777777777777
Q ss_pred Ccccccc-----cccCcEEEecCCCCCCCCCCcccCccccceeccccCC-C---CCccccCCCCCCCeEEEecccCcchh
Q 043839 181 ITPLLKL-----MQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-S---CTPDILGRLPNVQTLRISGDLSYHHS 251 (415)
Q Consensus 181 ~~~~i~~-----l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~ 251 (415)
++..+.. .++|++|++++|.+....+..++.+++|++|++.++. . ..+..++.+ +|+.|+++++. ..
T Consensus 110 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---LT 185 (332)
T ss_dssp CSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---CS
T ss_pred CCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---CC
Confidence 7622111 1567777777444443333346667777777776665 1 344455555 67777776662 22
Q ss_pred cHHHhhhccCCCcEEEeecCccccccccc--c-c-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-----
Q 043839 252 GVSKSLCELHKLECLKLVNEGKMWQFSRM--I-L-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----- 322 (415)
Q Consensus 252 ~~~~~l~~l~~L~~L~l~~~~~il~~l~L--l-p-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----- 322 (415)
.+|..+. ++|+.|++++ + ++ + | .+..+ ++|++|++++|.+.+..+..++.+++|+.|++++
T Consensus 186 ~l~~~~~--~~L~~L~l~~-n------~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDH-N------KIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp SCCSSSC--SSCSCCBCCS-S------CCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred ccCcccc--CCCCEEECCC-C------cCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 2333322 5666666666 3 22 2 2 55666 6677777777766555555666666666666655
Q ss_pred ----CCCCCcccEEEeccCCCccceEEc-CCC------ccCccEEEEecCccc--CCChhhhcCCCCCCeEEEecC
Q 043839 323 ----NSSFPLLKILHLKSMLWLEEWTMG-AGS------MPKLESLILNPCAYL--RKLPEELWCIKNLCKLELHWP 385 (415)
Q Consensus 323 ----~~~~~~L~~L~l~~~~~l~~l~~~-~~~------l~~L~~L~l~~c~~~--~~lp~~l~~l~~L~~L~l~~c 385 (415)
...+++|++|++++| .++.++.. +.. .++|+.|++.+|+.. ...|..+..+++|+.++++++
T Consensus 256 lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 233455666666665 34444321 111 345666666666644 234455555666666666554
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=8e-22 Score=208.96 Aligned_cols=144 Identities=19% Similarity=0.135 Sum_probs=104.4
Q ss_pred CCCceeEEEEEeCCCCCccC-CCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCcc
Q 043839 98 SLANVKRCFILKDLTEFFPL-EHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLF 173 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~-~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~ 173 (415)
.+..++++.+. .+....+. ..+ +++||+|.+.++... ..+.+..|.++++|++|++++|.+. ..|..+++++
T Consensus 22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 35678888888 77665443 333 888899988887442 3444677888899999999988888 5578888888
Q ss_pred CCceEecCc--------c--cccccccCcEEEecCCCCCCCCC-CcccCccccceeccccCC--CCCccccCCC--CCCC
Q 043839 174 HLKYLKLIT--------P--LLKLMQKLMHLNFGSITMPSPPN-NYSSSLKDLIFISAVHPS--SCTPDILGRL--PNVQ 238 (415)
Q Consensus 174 ~L~~L~l~~--------~--~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~~l~~l--~~L~ 238 (415)
+|++|++++ . .++++++|++|++++|.+....| ..++++++|++|++.++. ...+..++.+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 999998887 1 26778888999988776655443 468888888888888876 4444555544 5666
Q ss_pred eEEEecc
Q 043839 239 TLRISGD 245 (415)
Q Consensus 239 ~L~l~~~ 245 (415)
.|+++.|
T Consensus 178 ~L~L~~n 184 (844)
T 3j0a_A 178 FFSLAAN 184 (844)
T ss_dssp CCEECCS
T ss_pred eEECCCC
Confidence 6666665
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.5e-21 Score=206.86 Aligned_cols=269 Identities=16% Similarity=0.114 Sum_probs=203.0
Q ss_pred CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cC-cccccCccCCceEecCc-----
Q 043839 110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LY-PPGLENLFHLKYLKLIT----- 182 (415)
Q Consensus 110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~----- 182 (415)
......+|. ..++++.|.+.++.. ..+.+..|.++++|++|++++|... .+ |..+.++++|++|++++
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCC----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcC----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 334444565 678999999999988 5556677999999999999999644 55 78899999999999998
Q ss_pred ---ccccccccCcEEEecCCCCCCCCCCc--ccCccccceeccccCC-CCC--ccccCCCCCCCeEEEecccCcchhcHH
Q 043839 183 ---PLLKLMQKLMHLNFGSITMPSPPNNY--SSSLKDLIFISAVHPS-SCT--PDILGRLPNVQTLRISGDLSYHHSGVS 254 (415)
Q Consensus 183 ---~~i~~l~~L~~L~l~~~~~~~~~p~~--i~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~ 254 (415)
..++++++|++|++++|.....+|.. ++.+++|++|+++++. ... +..++++++|++|++++| ...+..+
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N--~i~~~~~ 165 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN--QIFLVCE 165 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS--CCCCCCS
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC--cCCeeCH
Confidence 56889999999999988777767765 8999999999999998 333 357899999999999998 3444444
Q ss_pred Hhhhcc--CCCcEEEeecCccc-------------------cccccc--------cc-----------------------
Q 043839 255 KSLCEL--HKLECLKLVNEGKM-------------------WQFSRM--------IL----------------------- 282 (415)
Q Consensus 255 ~~l~~l--~~L~~L~l~~~~~i-------------------l~~l~L--------lp----------------------- 282 (415)
..+..+ ++|+.|+++. +.+ ++.|.+ .|
T Consensus 166 ~~l~~l~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAA-NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp GGGHHHHHCSSCCCEECC-SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHcccccCCccceEECCC-CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 444444 5555555554 111 011100 00
Q ss_pred --------------CCCCC-CCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccC
Q 043839 283 --------------SEYKF-PPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSM 337 (415)
Q Consensus 283 --------------~~~~l-p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~ 337 (415)
.+..+ +++|+.|++++|.+.+..+..++.+++|+.|++++ ...+++|++|++++|
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 01111 25788888888888777777888899999999987 456788999999998
Q ss_pred CCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 338 LWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 338 ~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
.++.+ +..++.+++|+.|++++|......+..+..+++|+.|++++|.-
T Consensus 325 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 325 -LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp -CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred -CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 44544 67788999999999999977654455688899999999998763
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=6.3e-22 Score=199.86 Aligned_cols=279 Identities=16% Similarity=0.090 Sum_probs=181.2
Q ss_pred CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc--cCcccccCc
Q 043839 98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD--LYPPGLENL 172 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~lp~~i~~l 172 (415)
....++.+.+. ++....++. .+ +++|++|.+.++.. ....+..+.++++|++|++++|.++ ..|..++++
T Consensus 48 ~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 48 ACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDNHL----SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTSCC----CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred cCCcccEEECC-CCCcCccChhhccccccCCEEECCCCcc----CccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 45678899988 777665553 34 89999999999987 5666777999999999999999988 457789999
Q ss_pred cCCceEecCc---------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcccc-CCCCCCCeEE
Q 043839 173 FHLKYLKLIT---------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDIL-GRLPNVQTLR 241 (415)
Q Consensus 173 ~~L~~L~l~~---------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l-~~l~~L~~L~ 241 (415)
++|++|++++ ..++++++|++|++++|.+....|..++.+++|++|++.++. ..++..+ +.+++|+.|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 9999999987 357788999999999787776677776665555555443332 1111110 1112222222
Q ss_pred EecccC-------------------------c------------------------------------------------
Q 043839 242 ISGDLS-------------------------Y------------------------------------------------ 248 (415)
Q Consensus 242 l~~~~~-------------------------~------------------------------------------------ 248 (415)
+++|.- .
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 211100 0
Q ss_pred --------------------------------------chhcHHHhh-hccCCCcEEEeecCccc---------------
Q 043839 249 --------------------------------------HHSGVSKSL-CELHKLECLKLVNEGKM--------------- 274 (415)
Q Consensus 249 --------------------------------------~~~~~~~~l-~~l~~L~~L~l~~~~~i--------------- 274 (415)
....+|..+ ..+++|+.|++++ +.+
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE-NLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS-SCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC-Cccccccccchhhhhccc
Confidence 011123333 2456666666665 211
Q ss_pred -cccc-----cc--cc----CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--------------------
Q 043839 275 -WQFS-----RM--IL----SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-------------------- 322 (415)
Q Consensus 275 -l~~l-----~L--lp----~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-------------------- 322 (415)
|+.| ++ +| .+..+ ++|++|++++|.++ .+|..++.+++|++|++++
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls 439 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECC
T ss_pred cCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECC
Confidence 1111 11 11 24455 66666666666654 4555555566666666554
Q ss_pred -------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 323 -------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 -------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
...+++|++|++++| .++.+|. .+.+++|+.|++++|...+..|..+..+++|+.|++++||
T Consensus 440 ~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 440 NNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 125677888888887 5667775 4678899999999988876666678889999999998776
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.3e-22 Score=204.39 Aligned_cols=247 Identities=13% Similarity=0.044 Sum_probs=205.8
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEE
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHL 194 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L 194 (415)
+++++.|.+.++... .+. .+..+++|++|++++|.+..+| .+ .+++|++|++++ ..++.+++|++|
T Consensus 284 l~~L~~L~l~~~~~~----~l~--~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 284 LANVSAMSLAGVSIK----YLE--DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp GTTCSEEEEESCCCC----CCC--CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred CCCCCEEEecCccch----hhh--hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence 889999999988873 332 6788899999999999998888 45 899999999987 456688999999
Q ss_pred EecCCCCCCC--CCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHH-HhhhccCCCcEEEeec
Q 043839 195 NFGSITMPSP--PNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVS-KSLCELHKLECLKLVN 270 (415)
Q Consensus 195 ~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~ 270 (415)
++++|.+... +|..++.+++|++|++.++. ..+|..+..+++|+.|++++| ...+..+ ..+..+++|+.|++++
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS--TLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS--EEESTTTTTTTTTCTTCCEEECTT
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC--ccCCccChhhhhccccCCEEECcC
Confidence 9996665433 47778899999999999998 667788999999999999998 4444444 5788999999999998
Q ss_pred Cccccccccc---cc-CCCCCCCCceEEEEEccccCCC-CchhhcCCCCCCeEeecc----------CCCCCcccEEEec
Q 043839 271 EGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMED-PMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLK 335 (415)
Q Consensus 271 ~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~ 335 (415)
+ ++ .| .+..+ ++|++|++++|.+.+. .+..++.+++|+.|++++ ...+++|++|+++
T Consensus 434 -n------~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 434 -T------NTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp -S------CCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -C------CCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 5 33 56 78889 9999999999998763 677899999999999998 4567899999999
Q ss_pred cCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCC-CCCeEEEecCC
Q 043839 336 SMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIK-NLCKLELHWPQ 386 (415)
Q Consensus 336 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~-~L~~L~l~~c~ 386 (415)
+|...+..|..++.+++|+.|++++|... .+|..+..++ +|+.|+++++|
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 99544445778999999999999999866 7898888887 59999998754
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=9.7e-22 Score=185.72 Aligned_cols=240 Identities=15% Similarity=0.095 Sum_probs=132.5
Q ss_pred cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCcccccccccCcEE
Q 043839 116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLITPLLKLMQKLMHL 194 (415)
Q Consensus 116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l~~L~~L 194 (415)
++....++++.|.+.++.. ..+.+..+.++++|++|++++|.++.+ |..++++ ++|++|
T Consensus 46 lp~~~~~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l----------------~~L~~L 105 (330)
T 1xku_A 46 VPKDLPPDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL----------------VKLERL 105 (330)
T ss_dssp CCCSCCTTCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC----------------TTCCEE
T ss_pred cCccCCCCCeEEECCCCcC----CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC----------------CCCCEE
Confidence 3333344555555555554 333333455555555555555555532 4444444 445555
Q ss_pred EecCCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCc
Q 043839 195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEG 272 (415)
Q Consensus 195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (415)
++++|. ...+|..+. ++|++|++.++. ..+ +..+..+++|+.|+++++.....+..+..+..+++|+.|++++ +
T Consensus 106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n 181 (330)
T 1xku_A 106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-T 181 (330)
T ss_dssp ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-S
T ss_pred ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-C
Confidence 555333 234444443 566666666665 332 3345666666666666653111223445556666666666665 3
Q ss_pred cccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCcc
Q 043839 273 KMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLE 341 (415)
Q Consensus 273 ~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~ 341 (415)
.+-+ +| .+ . ++|++|++++|.+++..+..++.+++|+.|++++ ...+++|++|++++| .++
T Consensus 182 ~l~~----l~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 253 (330)
T 1xku_A 182 NITT----IPQGL--P-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV 253 (330)
T ss_dssp CCCS----CCSSC--C-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS
T ss_pred cccc----CCccc--c-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCc
Confidence 1000 33 22 2 5666666666666555556666666666666665 234566777777777 566
Q ss_pred ceEEcCCCccCccEEEEecCcccCCChhhhc------CCCCCCeEEEecCCh
Q 043839 342 EWTMGAGSMPKLESLILNPCAYLRKLPEELW------CIKNLCKLELHWPQP 387 (415)
Q Consensus 342 ~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~------~l~~L~~L~l~~c~~ 387 (415)
.+|..+..+++|++|++++|+..+--+..+. ..+.|+.|++.++|.
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 7777777777788888877766532222222 236677777777764
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3.9e-21 Score=190.25 Aligned_cols=258 Identities=21% Similarity=0.145 Sum_probs=160.1
Q ss_pred CceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceE
Q 043839 100 ANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYL 178 (415)
Q Consensus 100 ~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 178 (415)
..++.+.+. +.....++... +++|++|.+.++... .+.+ +.++++|++|++++|.+..++. ++++++|++|
T Consensus 46 ~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLT----DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecC-CCCCccCcchhhhcCCCEEECCCCccC----Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 456677766 65555455433 777777777777652 2322 6777777777777777776655 6777777777
Q ss_pred ecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc---------------------ccCC-CCCccc
Q 043839 179 KLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA---------------------VHPS-SCTPDI 230 (415)
Q Consensus 179 ~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l---------------------~~~~-~~~~~~ 230 (415)
++++ +.++++++|++|++++|.+. .++ .++.+++|++|++ .++. ..+ ..
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~ 194 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SV 194 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GG
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hh
Confidence 7776 34666677777777644432 232 2444555555554 4444 222 22
Q ss_pred cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchh
Q 043839 231 LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPT 308 (415)
Q Consensus 231 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~ 308 (415)
+..+++|+.|++++| ...+..+ ++.+++|+.|++++ + ++ ++.+..+ ++|++|++++|.+.+..+
T Consensus 195 l~~l~~L~~L~l~~n--~l~~~~~--~~~l~~L~~L~l~~-n------~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 195 LAKLTNLESLIATNN--QISDITP--LGILTNLDELSLNG-N------QLKDIGTLASL-TNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp GGGCTTCSEEECCSS--CCCCCGG--GGGCTTCCEEECCS-S------CCCCCGGGGGC-TTCSEEECCSSCCCCCGG--
T ss_pred hccCCCCCEEEecCC--ccccccc--ccccCCCCEEECCC-C------CcccchhhhcC-CCCCEEECCCCccccchh--
Confidence 444444444444444 1221111 34445555555554 2 11 3455567 788888888887754332
Q ss_pred hcCCCCCCeEeecc--------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeE
Q 043839 309 LEKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKL 380 (415)
Q Consensus 309 l~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L 380 (415)
++.+++|+.|++++ ...+++|++|++++| .++.++. ++.+++|+.|++++|...+..| +..+++|+.|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 77788888888876 345678888888887 4555543 6788888899998887765433 6778899999
Q ss_pred EEecCC
Q 043839 381 ELHWPQ 386 (415)
Q Consensus 381 ~l~~c~ 386 (415)
++++|+
T Consensus 337 ~l~~n~ 342 (466)
T 1o6v_A 337 FFYNNK 342 (466)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 998876
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.2e-21 Score=196.64 Aligned_cols=116 Identities=14% Similarity=0.000 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCccccc-CcccccCccCCceEecC
Q 043839 103 KRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDL-YPPGLENLFHLKYLKLI 181 (415)
Q Consensus 103 r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~ 181 (415)
+.+.+. +.....+|....++++.|.+.++.. ..+.+..|.++++|++|++++|.++. .|..+.++++|++|+++
T Consensus 34 ~~l~ls-~~~L~~ip~~~~~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYS-NRNLTHVPKDLPPRTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECT-TSCCCSCCTTSCTTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcC-CCCCccCCCCCCCCcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 555555 5555545554466777777777776 44455667777777777777777773 35667777777777777
Q ss_pred c------ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC
Q 043839 182 T------PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS 224 (415)
Q Consensus 182 ~------~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~ 224 (415)
+ +.. .+++|++|++++|.+.. .+|..++++++|++|++.++.
T Consensus 109 ~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 109 HNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp TSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 7 222 56777777777555543 345667777777777777765
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.7e-21 Score=179.91 Aligned_cols=224 Identities=19% Similarity=0.144 Sum_probs=177.0
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV 221 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 221 (415)
.++++++++++.++.+|..+. ++|++|++++ ..++++++|++|++++|.+....|..++.+++|++|++.
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 367777777777777776553 5677777776 356778888999998777776678899999999999999
Q ss_pred cCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEcc
Q 043839 222 HPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNT 299 (415)
Q Consensus 222 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~ 299 (415)
++. ..+|..+. ++|++|+++++ ......+..+..+++|+.|+++. +.+-. ....+ .+..+ ++|++|++++|
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~~-~~~~~~~~~~l-~~L~~L~l~~n 181 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHEN--EITKVRKSVFNGLNQMIVVELGT-NPLKS-SGIENGAFQGM-KKLSYIRIADT 181 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSS--CCCBBCHHHHTTCTTCCEEECCS-SCCCG-GGBCTTGGGGC-TTCCEEECCSS
T ss_pred CCcCCccChhhc--ccccEEECCCC--cccccCHhHhcCCccccEEECCC-CcCCc-cCcChhhccCC-CCcCEEECCCC
Confidence 998 77776654 89999999998 45566667789999999999998 42100 00034 67788 99999999999
Q ss_pred ccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCCh
Q 043839 300 KLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLP 368 (415)
Q Consensus 300 ~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp 368 (415)
.++. ++..+. ++|+.|++++ ...+++|++|++++| .++.++. .++.+++|+.|++++|... .+|
T Consensus 182 ~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 182 NITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp CCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred cccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence 9864 444433 8999999987 456789999999999 5666654 6889999999999999776 799
Q ss_pred hhhcCCCCCCeEEEecCCh
Q 043839 369 EELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 369 ~~l~~l~~L~~L~l~~c~~ 387 (415)
.++..+++|++|++++|+-
T Consensus 257 ~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp TTTTTCSSCCEEECCSSCC
T ss_pred hhhccCCCcCEEECCCCcC
Confidence 9999999999999998763
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=9.1e-21 Score=196.35 Aligned_cols=266 Identities=20% Similarity=0.156 Sum_probs=202.4
Q ss_pred CCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEecCc-------
Q 043839 111 LTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLIT------- 182 (415)
Q Consensus 111 ~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~------- 182 (415)
.....+|....+++++|.+.++.. ..+.+..|.++++|++|++++|.++ ..|..++++++|++|++++
T Consensus 14 ~~L~~ip~~~~~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 14 LKLTQVPDDLPTNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp SCCSSCCSCSCTTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred CCccccccccCCCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence 334445554478999999999987 5566677999999999999999998 5577789999999999998
Q ss_pred -ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhh-
Q 043839 183 -PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC- 258 (415)
Q Consensus 183 -~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~- 258 (415)
..++++++|++|++++|.+....|..++.+++|++|++.++. ...+..++.+++|++|++++| ...+..+..+.
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~ 167 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN--KIQALKSEELDI 167 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS--CCCCBCHHHHGG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC--cccccCHHHhhc
Confidence 358899999999999777765556789999999999999998 555677899999999999998 45444455554
Q ss_pred -ccCCCcEEEeecCccccccccccc-CCCCC--------------------------CCCceEEEEEccccCCCCchhhc
Q 043839 259 -ELHKLECLKLVNEGKMWQFSRMIL-SEYKF--------------------------PPTLTQLSLSNTKLMEDPMPTLE 310 (415)
Q Consensus 259 -~l~~L~~L~l~~~~~il~~l~Llp-~~~~l--------------------------p~~L~~L~l~~~~l~~~~~~~l~ 310 (415)
.+++|+.|++++ +.+-. +.| .+..+ .++|+.|++++|.+.+..+..++
T Consensus 168 ~~~~~L~~L~L~~-n~l~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 168 FANSSLKKLELSS-NQIKE---FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp GTTCEESEEECTT-CCCCC---BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred cccccccEEECCC-Ccccc---cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 458999999988 42100 011 22222 05678888888887777777777
Q ss_pred CCCC--CCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccC-----CChh----
Q 043839 311 KLPL--LEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLR-----KLPE---- 369 (415)
Q Consensus 311 ~l~~--L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~-----~lp~---- 369 (415)
.++. |+.|++++ ...+++|++|++++|...+..|..++.+++|+.|++++|...+ .+|.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 7754 99999887 3456889999999884333445678889999999998875433 3443
Q ss_pred hhcCCCCCCeEEEecCC
Q 043839 370 ELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 370 ~l~~l~~L~~L~l~~c~ 386 (415)
.+..+++|++|++++|.
T Consensus 324 ~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDND 340 (680)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred hcccCCCCCEEECCCCc
Confidence 57788999999998875
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=5.6e-21 Score=194.90 Aligned_cols=252 Identities=15% Similarity=0.078 Sum_probs=205.8
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc--------ccccccccC
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT--------PLLKLMQKL 191 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~--------~~i~~l~~L 191 (415)
.++++.+.+.++.. ..+++..+.++++|++|++++|.++.+ |..++.+++|++|++++ ..++++++|
T Consensus 50 l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 78999999998877 567778899999999999999999954 45899999999999998 346889999
Q ss_pred cEEEecCCCCCCCCCCc-ccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839 192 MHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL 268 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (415)
++|++++|.+. .+|.. ++.+++|++|+++++. ...|..++.+++|+.|++++|. ... + .+..+++|+.|++
T Consensus 126 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~-~--~~~~l~~L~~L~l 199 (597)
T 3oja_B 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANV 199 (597)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSB-C--CGGGCTTCSEEEC
T ss_pred CEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCC-c--Chhhhhhhhhhhc
Confidence 99999966555 55555 6999999999999998 4455579999999999999983 332 2 3667899999999
Q ss_pred ecCccc--------cccccc----cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCC
Q 043839 269 VNEGKM--------WQFSRM----IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSS 325 (415)
Q Consensus 269 ~~~~~i--------l~~l~L----lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~ 325 (415)
++ +.+ ++.|.+ +. .....|++|+.|++++|.+++ +..++.+++|+.|++++ ...
T Consensus 200 ~~-n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 200 SY-NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp CS-SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cc-CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 88 422 222211 11 111223789999999998864 47889999999999998 456
Q ss_pred CCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 326 FPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 326 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
+++|+.|++++| .++.+|...+.+++|+.|++++|... .+|..+..+++|+.|++++|+-
T Consensus 277 l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 277 MQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp CSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred ccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 789999999998 78889988899999999999999877 7898899999999999999873
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=4.2e-20 Score=182.11 Aligned_cols=215 Identities=17% Similarity=0.090 Sum_probs=121.3
Q ss_pred hccCCcccEEEcCCcccccCcccccCccCCceEecCc-----ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839 146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-----PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA 220 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-----~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 220 (415)
+.++++|++|++++|.++.+| ++.+++|++|++++ -.++++++|++|++++|...+.+ .++.+++|++|++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 444444444444444444433 44444444444444 22344445555555533333333 2445555555555
Q ss_pred ccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEE
Q 043839 221 VHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLS 297 (415)
Q Consensus 221 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~ 297 (415)
.++. ..++ ++.+++|+.|++++|. ..+ + .++.+++|+.|++++ + ++ +| +..+ ++|+.|+++
T Consensus 178 s~n~l~~l~--l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~-N------~l~~ip-~~~l-~~L~~L~l~ 241 (457)
T 3bz5_A 178 SFNKITELD--VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSS-N------KLTEID-VTPL-TQLTYFDCS 241 (457)
T ss_dssp CSSCCCCCC--CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCS-S------CCSCCC-CTTC-TTCSEEECC
T ss_pred CCCccceec--cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcC-C------cccccC-cccc-CCCCEEEee
Confidence 5555 3333 4555556666655552 221 1 255556666666665 3 22 44 5566 778888888
Q ss_pred ccccCCCCchhhcCCCCCCeE----------eecc--------CCCCCcccEEEeccCCCccceEE--------cCCCcc
Q 043839 298 NTKLMEDPMPTLEKLPLLEVL----------KLKQ--------NSSFPLLKILHLKSMLWLEEWTM--------GAGSMP 351 (415)
Q Consensus 298 ~~~l~~~~~~~l~~l~~L~~L----------~l~~--------~~~~~~L~~L~l~~~~~l~~l~~--------~~~~l~ 351 (415)
+|.+++..+ +.+++|+.| ++++ .+.+++|+.|++++|..++.+|. .+..++
T Consensus 242 ~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~ 318 (457)
T 3bz5_A 242 VNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318 (457)
T ss_dssp SSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred CCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence 877765433 334444444 3332 34557888888888877776664 245667
Q ss_pred CccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 352 KLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 352 ~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
+|+.|++++|...+ ++ +.++++|+.|+++++.
T Consensus 319 ~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 319 KLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred cCCEEECCCCcccc-cc--cccCCcCcEEECCCCC
Confidence 88888888887765 43 7788889999888755
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=190.53 Aligned_cols=278 Identities=17% Similarity=0.077 Sum_probs=175.2
Q ss_pred CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCcc
Q 043839 98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLF 173 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~ 173 (415)
.+..++++.+. ++....+.. .+ +++|++|.+.++.. ..+.+..|.++++|++|++++|.++.+ |..+++++
T Consensus 26 l~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcC----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 35568888888 776654543 23 88899999988876 455566788899999999999988844 46788889
Q ss_pred CCceEecCc--------ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC-C-CCccccCCCCCC----C
Q 043839 174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS-S-CTPDILGRLPNV----Q 238 (415)
Q Consensus 174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L----~ 238 (415)
+|++|++++ ..++++++|++|++++|.+.. .+|..++++++|++|++.++. . ..+..++.+++| +
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 999999887 247788899999998666654 578888889999999998887 3 334556666666 6
Q ss_pred eEEEecccCcchhc------------------------HHHhhhccCCCcEEEeec---C--ccc-------cc------
Q 043839 239 TLRISGDLSYHHSG------------------------VSKSLCELHKLECLKLVN---E--GKM-------WQ------ 276 (415)
Q Consensus 239 ~L~l~~~~~~~~~~------------------------~~~~l~~l~~L~~L~l~~---~--~~i-------l~------ 276 (415)
.|+++++. .... ++..+..+++++...+.. . +.+ ++
T Consensus 181 ~L~l~~n~--l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 181 SLDLSLNP--MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp EEECTTCC--CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hcccCCCC--ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 66666652 1111 222222222222221111 0 000 00
Q ss_pred --cc------cc---cc-CCCCCCCCceEEEEEccccCCCCchhhc--------------------CCCCCCeEeecc--
Q 043839 277 --FS------RM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLE--------------------KLPLLEVLKLKQ-- 322 (415)
Q Consensus 277 --~l------~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~--------------------~l~~L~~L~l~~-- 322 (415)
.+ .+ .| ++..+ ++|+.|++++|.+. .++..+. .+++|+.|++.+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCB
T ss_pred hhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCc
Confidence 00 00 23 34445 55666666555543 3343343 445555555544
Q ss_pred ------CCCCCcccEEEeccCCCccce---EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 323 ------NSSFPLLKILHLKSMLWLEEW---TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 ------~~~~~~L~~L~l~~~~~l~~l---~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
...+++|++|++++| .++.+ +..+..+++|+.|++++|...+ +|..+..+++|++|++++|.
T Consensus 337 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 337 GGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp SCCBCCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSE
T ss_pred cccccccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCc
Confidence 245677777777777 34433 4556778888888888887653 45457778888888888764
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=181.45 Aligned_cols=252 Identities=16% Similarity=0.069 Sum_probs=164.8
Q ss_pred CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc------
Q 043839 110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT------ 182 (415)
Q Consensus 110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~------ 182 (415)
+.....+|....+++++|.+.++.. ..+.+..+.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 40 ~~~l~~iP~~~~~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 40 SGSLNSIPSGLTEAVKSLDLSNNRI----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp STTCSSCCTTCCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCcccccccccccCcEEECCCCcC----cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 4444456655577899999988887 455555788899999999999988844 56688888888888877
Q ss_pred --ccccccccCcEEEecCCCCCCCCCC--cccCccccceeccccCC--CCC-ccccCCCCCCCeEEEecccCcchhcHHH
Q 043839 183 --PLLKLMQKLMHLNFGSITMPSPPNN--YSSSLKDLIFISAVHPS--SCT-PDILGRLPNVQTLRISGDLSYHHSGVSK 255 (415)
Q Consensus 183 --~~i~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 255 (415)
..++++++|++|++++|.+. .+|. .++.+++|++|++.++. ..+ +..++.+++|++|++++| ...+..+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~ 192 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--DLQSYEPK 192 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET--TCCEECTT
T ss_pred CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC--CcCccCHH
Confidence 22667778888888755443 4554 57777888888887774 333 455777788888888777 34455566
Q ss_pred hhhccCCCcEEEeecCccccccccccc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEE
Q 043839 256 SLCELHKLECLKLVNEGKMWQFSRMIL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILH 333 (415)
Q Consensus 256 ~l~~l~~L~~L~l~~~~~il~~l~Llp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~ 333 (415)
.+..+++|+.|++++ +.+-. +| .+..+ ++|+.|++++|.+++..+..+... ...+.++.++
T Consensus 193 ~l~~l~~L~~L~l~~-n~l~~----~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~-----------~~~~~l~~l~ 255 (353)
T 2z80_A 193 SLKSIQNVSHLILHM-KQHIL----LLEIFVDVT-SSVECLELRDTDLDTFHFSELSTG-----------ETNSLIKKFT 255 (353)
T ss_dssp TTTTCSEEEEEEEEC-SCSTT----HHHHHHHHT-TTEEEEEEESCBCTTCCCC-----------------CCCCCCEEE
T ss_pred HHhccccCCeecCCC-Ccccc----chhhhhhhc-ccccEEECCCCccccccccccccc-----------cccchhhccc
Confidence 777777777777776 31100 33 23345 777777777777655433322211 1223344455
Q ss_pred eccCC----CccceEEcCCCccCccEEEEecCcccCCChhhh-cCCCCCCeEEEecCC
Q 043839 334 LKSML----WLEEWTMGAGSMPKLESLILNPCAYLRKLPEEL-WCIKNLCKLELHWPQ 386 (415)
Q Consensus 334 l~~~~----~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l-~~l~~L~~L~l~~c~ 386 (415)
+.++. .+..+|..++.+++|+.|++++|... .+|.++ ..+++|++|++++++
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 55442 12245556677888888888888665 677664 778888888888765
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.3e-20 Score=178.06 Aligned_cols=244 Identities=17% Similarity=0.140 Sum_probs=192.9
Q ss_pred ceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc--------ccccccccCcE
Q 043839 123 YLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT--------PLLKLMQKLMH 193 (415)
Q Consensus 123 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~--------~~i~~l~~L~~ 193 (415)
+++.+.+.++... .++. .+ .++|++|++++|.++.+ |..+.++++|++|++++ ..++++++|++
T Consensus 34 ~l~~l~~~~~~l~----~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLK----AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCS----SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCcc----ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 6888888877652 2222 12 36899999999999955 56899999999999998 46788999999
Q ss_pred EEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecC
Q 043839 194 LNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNE 271 (415)
Q Consensus 194 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (415)
|++++|. ...+|..+. ++|++|++.++. ..++. .++.+++|+.|+++++.....+..+..+..+ +|+.|++++
T Consensus 107 L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~- 181 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE- 181 (332)
T ss_dssp EECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-
T ss_pred EECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-
Confidence 9999554 447787665 899999999998 55554 5899999999999998421123455666666 899999988
Q ss_pred ccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCC
Q 043839 272 GKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSML 338 (415)
Q Consensus 272 ~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~ 338 (415)
+ ++ +| .+ . ++|++|++++|.+.+..+..++.+++|+.|++++ ...+++|++|++++|
T Consensus 182 n------~l~~l~~~~--~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N- 251 (332)
T 2ft3_A 182 A------KLTGIPKDL--P-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN- 251 (332)
T ss_dssp S------BCSSCCSSS--C-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-
T ss_pred C------CCCccCccc--c-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-
Confidence 4 22 55 32 2 7899999999999877778899999999999987 345789999999999
Q ss_pred CccceEEcCCCccCccEEEEecCcccCCChhhhcC------CCCCCeEEEecCChh
Q 043839 339 WLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWC------IKNLCKLELHWPQPH 388 (415)
Q Consensus 339 ~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~------l~~L~~L~l~~c~~~ 388 (415)
.++.+|..++.+++|+.|++++|+....-+..+.. .+.|+.|++.++|..
T Consensus 252 ~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 77899988999999999999999876433343433 477999999999853
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=6.9e-21 Score=181.59 Aligned_cols=212 Identities=16% Similarity=0.169 Sum_probs=115.9
Q ss_pred cccEEEcCCcccccCcc-cccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc
Q 043839 151 HLRVLNLGSAVLDLYPP-GLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP 228 (415)
Q Consensus 151 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~ 228 (415)
+|++|++++|.++.+|. .+.++++|++|++++ |.+....|..++.+++|++|++.++. ..++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~----------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTS----------------NGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTT----------------SCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCC----------------CccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 55666666666554433 445555555555544 33333333344555555555555544 3333
Q ss_pred cc-cCCCCCCCeEEEecccCcchhcHHH--hhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCC
Q 043839 229 DI-LGRLPNVQTLRISGDLSYHHSGVSK--SLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMED 304 (415)
Q Consensus 229 ~~-l~~l~~L~~L~l~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~ 304 (415)
.. ++.+++|++|++++| ....++. .+..+++|+.|++++ +..+.. +.| .+..+ ++|++|++++|.+.+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n---~l~~l~~~~~~~~l~~L~~L~l~~-n~~~~~--~~~~~~~~l-~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGN---PYKTLGETSLFSHLTKLQILRVGN-MDTFTK--IQRKDFAGL-TFLEELEIDASDLQSY 189 (353)
T ss_dssp HHHHTTCTTCSEEECTTC---CCSSSCSSCSCTTCTTCCEEEEEE-SSSCCE--ECTTTTTTC-CEEEEEEEEETTCCEE
T ss_pred HhHhCCCccCCEEECCCC---CCcccCchhhhccCCCCcEEECCC-Cccccc--cCHHHccCC-CCCCEEECCCCCcCcc
Confidence 33 445555555555554 1122222 344455555555544 200000 012 44555 5666666666655554
Q ss_pred CchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEE----cCCCccCccEEEEecCcccC----C
Q 043839 305 PMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTM----GAGSMPKLESLILNPCAYLR----K 366 (415)
Q Consensus 305 ~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~----~~~~l~~L~~L~l~~c~~~~----~ 366 (415)
.+..++.+++|++|++++ ...+++|++|++++| .++.++. .....+.++.++++++...+ .
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhh
Confidence 555556666666666654 123567777888887 4444331 13456788899999887654 4
Q ss_pred ChhhhcCCCCCCeEEEecCC
Q 043839 367 LPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 367 lp~~l~~l~~L~~L~l~~c~ 386 (415)
+|..+..+++|+.|++++|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCC
Confidence 78889999999999999875
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=5.5e-20 Score=181.26 Aligned_cols=254 Identities=19% Similarity=0.038 Sum_probs=198.1
Q ss_pred CCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCce
Q 043839 99 LANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKY 177 (415)
Q Consensus 99 ~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 177 (415)
...++.+.+. ++....++... +++|++|.+.++.... + .+..+++|++|++++|.++.+| ++++++|++
T Consensus 41 l~~L~~L~Ls-~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCH-NSSITDMTGIEKLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECC-SSCCCCCTTGGGCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEcc-CCCcccChhhcccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 5678888888 77666565333 8999999999998743 2 2788999999999999998775 889999999
Q ss_pred EecCc-----ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcch
Q 043839 178 LKLIT-----PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHH 250 (415)
Q Consensus 178 L~l~~-----~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~ 250 (415)
|++++ -.++++++|++|++++|.+.. ++ ++.+++|++|++.++. +.+ .++.+++|+.|++++|. .
T Consensus 111 L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~--l- 182 (457)
T 3bz5_A 111 LNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK--I- 182 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC--C-
T ss_pred EECCCCcCCeecCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc--c-
Confidence 99998 336788999999999666544 43 7889999999999986 444 47889999999999983 3
Q ss_pred hcHHHhhhccCCCcEEEeecCccccccccccc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc------
Q 043839 251 SGVSKSLCELHKLECLKLVNEGKMWQFSRMIL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------ 322 (415)
Q Consensus 251 ~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------ 322 (415)
..++ +..+++|+.|++++ + + +. .+..+ ++|+.|++++|.+++ +| ++.+++|+.|++++
T Consensus 183 ~~l~--l~~l~~L~~L~l~~-N------~-l~~~~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDT-N------N-ITKLDLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCCC--CTTCTTCCEEECCS-S------C-CSCCCCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred ceec--cccCCCCCEEECcC-C------c-CCeeccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 3344 78889999999988 4 2 22 46778 999999999999876 44 88999999999998
Q ss_pred -CCCCCcc----------cEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhh--------hcCCCCCCeEEEe
Q 043839 323 -NSSFPLL----------KILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEE--------LWCIKNLCKLELH 383 (415)
Q Consensus 323 -~~~~~~L----------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~--------l~~l~~L~~L~l~ 383 (415)
.+.+++| +.|++++|..++.+| .+.+++|+.|++++|+.++.+|.. +.++++|+.|+++
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence 3445555 455666666666666 478999999999999987776642 4455677777776
Q ss_pred cCC
Q 043839 384 WPQ 386 (415)
Q Consensus 384 ~c~ 386 (415)
++.
T Consensus 327 ~N~ 329 (457)
T 3bz5_A 327 NTE 329 (457)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=3.8e-20 Score=172.82 Aligned_cols=230 Identities=18% Similarity=0.108 Sum_probs=117.2
Q ss_pred ccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC---cccccCccCCceEecCcccccccccC
Q 043839 115 FPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY---PPGLENLFHLKYLKLITPLLKLMQKL 191 (415)
Q Consensus 115 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~i~~l~~L 191 (415)
.++....++++.|.+.++.. ..+....|.++++|++|++++|.++.. |..+..+++|++|++++
T Consensus 21 ~ip~~~~~~l~~L~L~~n~l----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~--------- 87 (306)
T 2z66_A 21 SVPTGIPSSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF--------- 87 (306)
T ss_dssp SCCSCCCTTCCEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS---------
T ss_pred cCCCCCCCCCCEEECCCCcc----CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC---------
Confidence 34443355677777766665 344444566777777777777766532 44444555555555554
Q ss_pred cEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc--cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839 192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL 268 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (415)
|. ...+|..+..+++|++|++.++. ..++ ..+..+++|++|++++| ......+..+..+++|+.|++
T Consensus 88 -------n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 88 -------NG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp -------CS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--CCEECSTTTTTTCTTCCEEEC
T ss_pred -------Cc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--cCCccchhhcccCcCCCEEEC
Confidence 22 22334444445555555555544 2222 23445555555555555 233333444455555555555
Q ss_pred ecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE-Ec
Q 043839 269 VNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT-MG 346 (415)
Q Consensus 269 ~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~-~~ 346 (415)
++ +.+-+ ..+| .+..+ ++|++|++++|.+++..+..++.+++|+.|++ ++| .++.++ ..
T Consensus 158 ~~-n~l~~--~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--------------~~N-~l~~~~~~~ 218 (306)
T 2z66_A 158 AG-NSFQE--NFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM--------------SHN-NFFSLDTFP 218 (306)
T ss_dssp TT-CEEGG--GEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--------------TTS-CCSBCCSGG
T ss_pred CC-Ccccc--ccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC--------------CCC-ccCccChhh
Confidence 54 21100 0034 55666 67777777777665544555554444444443 444 233332 23
Q ss_pred CCCccCccEEEEecCcccCCChhhhcCCC-CCCeEEEecCC
Q 043839 347 AGSMPKLESLILNPCAYLRKLPEELWCIK-NLCKLELHWPQ 386 (415)
Q Consensus 347 ~~~l~~L~~L~l~~c~~~~~lp~~l~~l~-~L~~L~l~~c~ 386 (415)
+..+++|+.|++++|...+..|..+..++ +|+.|++++++
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 45555666666666655554555555553 56666665543
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.8e-20 Score=174.96 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=117.1
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCC--CCCCcccCccccceecccc
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPS--PPNNYSSSLKDLIFISAVH 222 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~l~~ 222 (415)
+.++.+++.++.+|..+. .+|++|++++ ..++++++|++|++++|.+.. ..|..+..+++|++|++.+
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 345555555555554332 2333333332 112334444444444333221 1133444556666666666
Q ss_pred CC-CCCccccCCCCCCCeEEEecccCcchhcHH-HhhhccCCCcEEEeecCccccccccc---cc-CCCCCCCCceEEEE
Q 043839 223 PS-SCTPDILGRLPNVQTLRISGDLSYHHSGVS-KSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSL 296 (415)
Q Consensus 223 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l 296 (415)
+. ..++..+..+++|++|+++++ ......+ ..+..+++|+.|++++ + ++ .| .+..+ ++|++|++
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~l 157 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHS--NLKQMSEFSVFLSLRNLIYLDISH-T------HTRVAFNGIFNGL-SSLEVLKM 157 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTS--EEESSTTTTTTTTCTTCCEEECTT-S------CCEECSTTTTTTC-TTCCEEEC
T ss_pred CccccChhhcCCCCCCCEEECCCC--cccccccchhhhhccCCCEEECCC-C------cCCccchhhcccC-cCCCEEEC
Confidence 66 555555666666666666665 1221111 2445555555555555 2 11 22 44455 55555555
Q ss_pred EccccCC-CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839 297 SNTKLME-DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCI 374 (415)
Q Consensus 297 ~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l 374 (415)
++|.+.+ ..+..+ ..+++|++|++++| .++.+ |..++.+++|+.|++++|...+..+..+..+
T Consensus 158 ~~n~l~~~~~~~~~--------------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 158 AGNSFQENFLPDIF--------------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTCEEGGGEECSCC--------------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred CCCccccccchhHH--------------hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 5555433 123333 34566777777888 56655 5678899999999999998876555678899
Q ss_pred CCCCeEEEecCC
Q 043839 375 KNLCKLELHWPQ 386 (415)
Q Consensus 375 ~~L~~L~l~~c~ 386 (415)
++|+.|++++|+
T Consensus 223 ~~L~~L~L~~N~ 234 (306)
T 2z66_A 223 NSLQVLDYSLNH 234 (306)
T ss_dssp TTCCEEECTTSC
T ss_pred ccCCEeECCCCC
Confidence 999999999986
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.6e-19 Score=185.00 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=67.5
Q ss_pred CCceEEEEEccccCC-CCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceE-EcCCCccCccEE
Q 043839 289 PTLTQLSLSNTKLME-DPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPKLESL 356 (415)
Q Consensus 289 ~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L 356 (415)
++++.|++++|.... ..+..++.+++|++|++++ ..++++|++|+|++| .++.++ ..++.+++|+.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEE
Confidence 555556665554322 2345566777777777776 345678888888887 566554 457788888888
Q ss_pred EEecCcccCCChhhhcCC-CCCCeEEEecCC
Q 043839 357 ILNPCAYLRKLPEELWCI-KNLCKLELHWPQ 386 (415)
Q Consensus 357 ~l~~c~~~~~lp~~l~~l-~~L~~L~l~~c~ 386 (415)
++++|...+..|..+.++ ++|+.|+++++|
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 888888777667777776 678888887644
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=178.41 Aligned_cols=232 Identities=16% Similarity=0.119 Sum_probs=138.5
Q ss_pred CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCccccccc
Q 043839 110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLITPLLKLM 188 (415)
Q Consensus 110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l 188 (415)
+.....+|....++++.|.+.++.. ..+.+..|.++++|++|++++|.++.++ ..+. ++
T Consensus 52 ~~~l~~iP~~~~~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~----------------~l 111 (440)
T 3zyj_A 52 RKNLREVPDGISTNTRLLNLHENQI----QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN----------------GL 111 (440)
T ss_dssp SCCCSSCCSCCCTTCSEEECCSCCC----CEECTTTTSSCSSCCEEECCSSCCCEECGGGGT----------------TC
T ss_pred CCCcCcCCCCCCCCCcEEEccCCcC----CeeCHHHhhCCCCCCEEECCCCcCCccChhhcc----------------CC
Confidence 3333445544466677777766665 3444455667777777777777666333 3344 44
Q ss_pred ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHH-HhhhccCCCcE
Q 043839 189 QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVS-KSLCELHKLEC 265 (415)
Q Consensus 189 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~ 265 (415)
++|++|++++|.+....+..+..+++|++|++.++. ..++. .+..+++|++|+++++ .....++ ..+..+++|+.
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCSSCCE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC--CCcceeCcchhhcccccCe
Confidence 555555555444443333356777777777777776 43333 4667777777777765 2333333 24566777777
Q ss_pred EEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce
Q 043839 266 LKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW 343 (415)
Q Consensus 266 L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l 343 (415)
|++++ + ++ +|.+..+ ++|+.|++++|.+++..+..+..+++|+.|++ ++| .++.+
T Consensus 190 L~L~~-n------~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--------------~~n-~l~~~ 246 (440)
T 3zyj_A 190 LNLAM-C------NLREIPNLTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM--------------IQS-QIQVI 246 (440)
T ss_dssp EECTT-S------CCSSCCCCTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEEC--------------TTC-CCCEE
T ss_pred ecCCC-C------cCccccccCCC-cccCEEECCCCccCccChhhhccCccCCEEEC--------------CCC-ceeEE
Confidence 77766 4 22 5555667 78888888888776655666665555555554 555 34433
Q ss_pred E-EcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 344 T-MGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 344 ~-~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
+ ..+..+++|+.|++++|......+..+..+++|+.|+++++|
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 3 345667777777777776554333445667777777776554
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.6e-19 Score=177.88 Aligned_cols=226 Identities=15% Similarity=0.107 Sum_probs=135.9
Q ss_pred cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCcccccccccCcEE
Q 043839 116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLITPLLKLMQKLMHL 194 (415)
Q Consensus 116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l~~L~~L 194 (415)
++....++++.|.+.++.. ..+.+..|.++++|++|++++|.++.++ ..+ .++++|++|
T Consensus 69 iP~~~~~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----------------~~l~~L~~L 128 (452)
T 3zyi_A 69 VPQGIPSNTRYLNLMENNI----QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF----------------NGLASLNTL 128 (452)
T ss_dssp CCSCCCTTCSEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTT----------------TTCTTCCEE
T ss_pred cCCCCCCCccEEECcCCcC----ceECHHHcCCCCCCCEEECCCCccCCcChhhc----------------cCcccCCEE
Confidence 4443355666666666655 3344455666666666666666665322 333 444555555
Q ss_pred EecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHH-hhhccCCCcEEEeecC
Q 043839 195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSK-SLCELHKLECLKLVNE 271 (415)
Q Consensus 195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 271 (415)
++++|.+....+..++.+++|++|++.++. ..++. .+..+++|+.|+++++ .....++. .+..+++|+.|++++
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~~L~~L~L~~- 205 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL--KKLEYISEGAFEGLFNLKYLNLGM- 205 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCTTCCEEECTT-
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC--CCccccChhhccCCCCCCEEECCC-
Confidence 555454443333446777777777777776 44433 4667777777777775 23333332 456677777777776
Q ss_pred ccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce-EEcCC
Q 043839 272 GKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW-TMGAG 348 (415)
Q Consensus 272 ~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l-~~~~~ 348 (415)
+ ++ +|.+..+ ++|+.|++++|.+++..+..++.+++|+.|++ ++| .++.+ +..+.
T Consensus 206 n------~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--------------~~n-~l~~~~~~~~~ 263 (452)
T 3zyi_A 206 C------NIKDMPNLTPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV--------------MNS-QVSLIERNAFD 263 (452)
T ss_dssp S------CCSSCCCCTTC-TTCCEEECTTSCCSEECGGGGTTCTTCCEEEC--------------TTS-CCCEECTTTTT
T ss_pred C------ccccccccccc-ccccEEECcCCcCcccCcccccCccCCCEEEe--------------CCC-cCceECHHHhc
Confidence 3 22 5555667 78888888888776666666666655555554 555 34433 34466
Q ss_pred CccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 349 SMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 349 ~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.+++|+.|++++|....-.+..+..+++|+.|+++++|
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 77777777777776653333445667777777777655
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=7.1e-20 Score=169.21 Aligned_cols=198 Identities=20% Similarity=0.172 Sum_probs=129.2
Q ss_pred CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc------
Q 043839 110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT------ 182 (415)
Q Consensus 110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~------ 182 (415)
+.....++....++++.|.+.++.. ..+.+..|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 20 ~~~l~~ip~~~~~~l~~L~l~~n~i----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 20 QQGLQAVPVGIPAASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp SSCCSSCCTTCCTTCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred cCCcccCCcCCCCCceEEEeeCCcC----CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 3444445544477888888888877 455556688888899999988888844 66777788888888776
Q ss_pred ---ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhh
Q 043839 183 ---PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSL 257 (415)
Q Consensus 183 ---~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l 257 (415)
..+.++++|++|++++|.+....|..++.+++|++|++.++. ..++. .++.+++|++|++++| ......+..+
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~ 173 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAF 173 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--cccccCHHHh
Confidence 234556777777777555555556666777777777777776 44433 3666777777777776 2333233346
Q ss_pred hccCCCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeec
Q 043839 258 CELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK 321 (415)
Q Consensus 258 ~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 321 (415)
..+++|+.|++++ + ++ .| ++..+ ++|+.|++++|.+++..+..++.+++|+.|+++
T Consensus 174 ~~l~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 174 RGLHSLDRLLLHQ-N------RVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TTCTTCCEEECCS-S------CCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred cCccccCEEECCC-C------cccccCHhHccCc-ccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 6667777777766 4 22 34 66666 677777777777665555556655555555553
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=6.4e-21 Score=179.09 Aligned_cols=232 Identities=18% Similarity=0.070 Sum_probs=152.0
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc---ccccccccCcEEEec
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---PLLKLMQKLMHLNFG 197 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---~~i~~l~~L~~L~l~ 197 (415)
.++++.|.+.++.. ..+.+..+.++++|++|++++|.++..+. +..+++|++|++++ ..+...++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCC----CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CCCCCEEECcCCcc----CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence 45777777777766 44556677778888888888887774444 77777888888877 444455777778777
Q ss_pred CCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhh-hccCCCcEEEeecCccc
Q 043839 198 SITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSL-CELHKLECLKLVNEGKM 274 (415)
Q Consensus 198 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~i 274 (415)
+|.+....+ ..+++|++|++.++. ..+ +..++.+++|+.|++++| ......+..+ ..+++|+.|++++ +
T Consensus 108 ~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~L~~-N-- 179 (317)
T 3o53_A 108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQY-N-- 179 (317)
T ss_dssp SSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTT-S--
T ss_pred CCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--CCCcccHHHHhhccCcCCEEECCC-C--
Confidence 555433222 235667777777777 333 335667777777777777 3444334444 3567777777776 4
Q ss_pred cccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccC
Q 043839 275 WQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPK 352 (415)
Q Consensus 275 l~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 352 (415)
++ +|....+ ++|++|++++|.+++ .++.++.+ ++|++|++++| .++.+|..+..+++
T Consensus 180 ----~l~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l--------------~~L~~L~L~~N-~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 180 ----FIYDVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSA--------------AGVTWISLRNN-KLVLIEKALRFSQN 238 (317)
T ss_dssp ----CCCEEECCCCC-TTCCEEECCSSCCCE-ECGGGGGG--------------TTCSEEECTTS-CCCEECTTCCCCTT
T ss_pred ----cCccccccccc-ccCCEEECCCCcCCc-chhhhccc--------------CcccEEECcCC-cccchhhHhhcCCC
Confidence 22 3422335 777777777777643 23334444 45555556676 66677777788888
Q ss_pred ccEEEEecCccc-CCChhhhcCCCCCCeEEEecCC
Q 043839 353 LESLILNPCAYL-RKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 353 L~~L~l~~c~~~-~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
|+.|++++|+.. +.+|..+..++.|+.+++.+++
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 888888888876 5567777778888877777543
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=5.2e-19 Score=163.41 Aligned_cols=176 Identities=17% Similarity=0.102 Sum_probs=93.4
Q ss_pred cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839 186 KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK 262 (415)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 262 (415)
+++++|++|++++|.+....|..++.+++|++|++.++. ..+ +..+..+++|++|+++++ ......+..+..+++
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC--GLQELGPGLFRGLAA 130 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTT
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC--cCCEECHhHhhCCcC
Confidence 334444444444343333334445555555555555553 222 344555555555555555 233333334444555
Q ss_pred CcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCC
Q 043839 263 LECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSML 338 (415)
Q Consensus 263 L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~ 338 (415)
|+.|++++ + ++ +| .+..+ ++|++|++++|.+++..+..++.+ ++|++|++++|
T Consensus 131 L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n- 187 (285)
T 1ozn_A 131 LQYLYLQD-N------ALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGL--------------HSLDRLLLHQN- 187 (285)
T ss_dssp CCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC--------------TTCCEEECCSS-
T ss_pred CCEEECCC-C------cccccCHhHhccC-CCccEEECCCCcccccCHHHhcCc--------------cccCEEECCCC-
Confidence 55555544 2 11 23 34555 666666666665543333334333 44555555666
Q ss_pred Cccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 339 WLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 339 ~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.++.+ |..++.+++|+.|++++|...+..+..+..+++|+.|+++++|
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 34433 5566777777888887777665444557777778888777655
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=5e-21 Score=179.44 Aligned_cols=188 Identities=20% Similarity=0.169 Sum_probs=101.0
Q ss_pred cccCcEEEecCCCCCCCCCCcc--cCccccceeccccCC-CCCccccCCC-----CCCCeEEEecccCcchhcHHHhhhc
Q 043839 188 MQKLMHLNFGSITMPSPPNNYS--SSLKDLIFISAVHPS-SCTPDILGRL-----PNVQTLRISGDLSYHHSGVSKSLCE 259 (415)
Q Consensus 188 l~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~-~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (415)
+++|++|++++|.+.+.+|..+ +.+++|++|+++++. ...|..++.+ ++|++|++++| ...+..+..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N--~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA--HSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC--SCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC--CCccchHHHhcc
Confidence 4445555554444444444443 445555555555544 3334333333 45555555554 233333344445
Q ss_pred cCCCcEEEeecCccccccccc-cc-C--CCCCCCCceEEEEEccccCC--CCc-hhhcCCCCCCeEeecc----------
Q 043839 260 LHKLECLKLVNEGKMWQFSRM-IL-S--EYKFPPTLTQLSLSNTKLME--DPM-PTLEKLPLLEVLKLKQ---------- 322 (415)
Q Consensus 260 l~~L~~L~l~~~~~il~~l~L-lp-~--~~~lp~~L~~L~l~~~~l~~--~~~-~~l~~l~~L~~L~l~~---------- 322 (415)
+++|+.|++++ |.+.. .. +| . +..+ ++|++|++++|.+++ ..+ ..+..+++|+.|++++
T Consensus 172 l~~L~~L~Ls~-N~l~~--~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 172 FPALSTLDLSD-NPELG--ERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp CSSCCEEECCS-CTTCH--HHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred CCCCCEEECCC-CCcCc--chHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 55555555544 31000 00 11 1 1444 555555555555431 111 1223445555555554
Q ss_pred -CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 323 -NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 -~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
...+++|++|++++| .++.+|..+. ++|+.|++++|...+ +|. +..+++|++|++++++
T Consensus 248 ~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCT
T ss_pred hhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCC
Confidence 122467888888888 5678877665 899999999997764 565 8889999999998875
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=3e-20 Score=184.69 Aligned_cols=229 Identities=17% Similarity=0.070 Sum_probs=167.6
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc---ccccccccCcEEEec
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---PLLKLMQKLMHLNFG 197 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---~~i~~l~~L~~L~l~ 197 (415)
+++|++|.+.++.. ..+.+..|..+++|++|++++|.++..++ ++.+++|++|++++ ..+...++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCC----CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CCCccEEEeeCCcC----CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence 45899999988887 45566778899999999999998885554 88889999999988 445556889999998
Q ss_pred CCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhh-ccCCCcEEEeecCccc
Q 043839 198 SITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC-ELHKLECLKLVNEGKM 274 (415)
Q Consensus 198 ~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~i 274 (415)
+|.+....+. .+++|++|++.++. ...|..++.+++|+.|++++| ...+..|..+. .+++|+.|++++ |
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~-N-- 179 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQY-N-- 179 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTT-S--
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCC-C--
Confidence 6655443332 45788899998888 444566788889999999888 45555666665 688888888888 4
Q ss_pred cccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccC
Q 043839 275 WQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPK 352 (415)
Q Consensus 275 l~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 352 (415)
.+ +|....+ ++|+.|++++|.+++. ++.++.++ +|+.|++++| .++.+|..++.+++
T Consensus 180 ----~l~~~~~~~~l-~~L~~L~Ls~N~l~~~-~~~~~~l~--------------~L~~L~Ls~N-~l~~lp~~l~~l~~ 238 (487)
T 3oja_A 180 ----FIYDVKGQVVF-AKLKTLDLSSNKLAFM-GPEFQSAA--------------GVTWISLRNN-KLVLIEKALRFSQN 238 (487)
T ss_dssp ----CCCEEECCCCC-TTCCEEECCSSCCCEE-CGGGGGGT--------------TCSEEECTTS-CCCEECTTCCCCTT
T ss_pred ----ccccccccccC-CCCCEEECCCCCCCCC-CHhHcCCC--------------CccEEEecCC-cCcccchhhccCCC
Confidence 22 4433356 8888888888887643 33455444 4555555666 56677777888888
Q ss_pred ccEEEEecCccc-CCChhhhcCCCCCCeEEEe
Q 043839 353 LESLILNPCAYL-RKLPEELWCIKNLCKLELH 383 (415)
Q Consensus 353 L~~L~l~~c~~~-~~lp~~l~~l~~L~~L~l~ 383 (415)
|+.|++++|+.. +.+|..+..++.|+.+++.
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888888888876 4566677777777766664
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=5.7e-18 Score=172.18 Aligned_cols=243 Identities=15% Similarity=0.015 Sum_probs=187.6
Q ss_pred ceeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEec
Q 043839 101 NVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKL 180 (415)
Q Consensus 101 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 180 (415)
.++.+.+. ++....++....+++++|.+.++... .+.. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls-~n~L~~lp~~l~~~L~~L~L~~N~l~----~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNLT----SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECC-SSCCSCCCSCCCTTCSEEEECSCCCS----CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEec-CCCcCccChhhCCCCcEEEecCCCCC----CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 46677777 76666676655789999999998873 3322 57899999999999998887 6789999999
Q ss_pred Cccccc----ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHH
Q 043839 181 ITPLLK----LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSK 255 (415)
Q Consensus 181 ~~~~i~----~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 255 (415)
++..+. .+++|++|++++|. ...+|.. +++|++|++++|. ..+|. .+++|+.|++++| ....+|
T Consensus 109 s~N~l~~l~~~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N---~l~~l~- 177 (622)
T 3g06_A 109 FSNPLTHLPALPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN---QLTSLP- 177 (622)
T ss_dssp CSCCCCCCCCCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS---CCSCCC-
T ss_pred cCCcCCCCCCCCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC---CCCCCc-
Confidence 983222 46789999999554 4557764 4889999999998 66664 3578999999988 333344
Q ss_pred hhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc------CCCCC
Q 043839 256 SLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------NSSFP 327 (415)
Q Consensus 256 ~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------~~~~~ 327 (415)
..+++|+.|++++ | ++ +| ..+ ++|+.|++++|.++. ++. .+++|+.|++++ ...++
T Consensus 178 --~~~~~L~~L~Ls~-N------~l~~l~--~~~-~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp~~l~ 241 (622)
T 3g06_A 178 --MLPSGLQELSVSD-N------QLASLP--TLP-SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLPVLPS 241 (622)
T ss_dssp --CCCTTCCEEECCS-S------CCSCCC--CCC-TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCCCCT
T ss_pred --ccCCCCcEEECCC-C------CCCCCC--Ccc-chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCCCCCC
Confidence 4568899999988 4 22 33 123 889999999998753 333 358899999987 35568
Q ss_pred cccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 328 LLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 328 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
+|+.|++++| .++.+|. .+++|+.|++++|... .+|..+.++++|+.|++++|+-
T Consensus 242 ~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 242 ELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred cCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 8999999998 7778876 6789999999999776 7898899999999999999873
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=2.2e-18 Score=169.60 Aligned_cols=70 Identities=23% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCCCeEeecc------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccC--CChhhhcCC----------
Q 043839 313 PLLEVLKLKQ------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLR--KLPEELWCI---------- 374 (415)
Q Consensus 313 ~~L~~L~l~~------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~--~lp~~l~~l---------- 374 (415)
++|+.|++++ ...+++|++|++++| .++.+|. .+++|++|++++|...+ .+|.++.++
T Consensus 317 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred CcCCEEECCCCccccccccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence 4777777776 233567888888887 5666765 57888888888888777 677777766
Q ss_pred ---CCCCeEEEecCC
Q 043839 375 ---KNLCKLELHWPQ 386 (415)
Q Consensus 375 ---~~L~~L~l~~c~ 386 (415)
++|+.|++++++
T Consensus 393 ~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 393 ELPQNLKQLHVETNP 407 (454)
T ss_dssp ---------------
T ss_pred cccCcCCEEECCCCc
Confidence 788888888765
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=3.2e-19 Score=167.48 Aligned_cols=210 Identities=16% Similarity=0.093 Sum_probs=138.7
Q ss_pred cchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCc
Q 043839 140 IDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSL 212 (415)
Q Consensus 140 ~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l 212 (415)
..+...+..+++|++|++++|.++.++ ..+.++++|++|++++ ..+..+++|++|++++|.+. . +...
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~-~----l~~~ 98 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-E----LLVG 98 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEE-E----EEEC
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccc-c----ccCC
Confidence 344566778889999999999999554 6788888888888877 33556666777777644322 1 2233
Q ss_pred cccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCc
Q 043839 213 KDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTL 291 (415)
Q Consensus 213 ~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L 291 (415)
++|++|++.++. ..++. ..+++|+.|++++| ......+..+..+++|+.|+++
T Consensus 99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~Ls---------------------- 152 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLK---------------------- 152 (317)
T ss_dssp TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSS--CCCSGGGBCTGGGSSEEEEECT----------------------
T ss_pred CCcCEEECCCCccCCcCc--cccCCCCEEECCCC--CCCCccchhhhccCCCCEEECC----------------------
Confidence 566666666665 33332 23556666666665 2332223344444555555554
Q ss_pred eEEEEEccccCCCCchhh-cCCCCCCeEeecc--------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCc
Q 043839 292 TQLSLSNTKLMEDPMPTL-EKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCA 362 (415)
Q Consensus 292 ~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 362 (415)
+|.+.+..+..+ +.+++|++|++++ ...+++|++|++++| .++.+|..+..+++|+.|++++|.
T Consensus 153 ------~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 153 ------LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp ------TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred ------CCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc
Confidence 444433333332 2344444444444 234678888899998 788888889999999999999997
Q ss_pred ccCCChhhhcCCCCCCeEEEecCChh
Q 043839 363 YLRKLPEELWCIKNLCKLELHWPQPH 388 (415)
Q Consensus 363 ~~~~lp~~l~~l~~L~~L~l~~c~~~ 388 (415)
.. .+|..+..+++|+.|++++++-.
T Consensus 226 l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 226 LV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cc-chhhHhhcCCCCCEEEccCCCcc
Confidence 76 68888999999999999998753
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=3.5e-18 Score=156.74 Aligned_cols=196 Identities=19% Similarity=0.226 Sum_probs=118.3
Q ss_pred cCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839 148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV 221 (415)
Q Consensus 148 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 221 (415)
.+++|+.|+++++.++.++ .+..+++|++|++++ +.++++++|++|++++|.+....+..++.+++|++|++.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 3444555555555444333 244444555555444 334556666666776555554444556778888888888
Q ss_pred cCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEE
Q 043839 222 HPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLS 295 (415)
Q Consensus 222 ~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~ 295 (415)
++. ..++. .++.+++|++|++++| ...+..+..+..+++|+.|++++ + ++ +| .+..+ ++|++|+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~ 187 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHN--QLQSLPKGVFDKLTNLTELDLSY-N------QLQSLPEGVFDKL-TQLKDLR 187 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEE
T ss_pred CCcCCccCHHHhccCCCCCEEECCCC--ccCccCHHHhccCccCCEEECCC-C------CcCccCHHHhcCC-ccCCEEE
Confidence 877 44443 3677888888888887 34333344456777777777777 4 22 44 46777 8888888
Q ss_pred EEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCC
Q 043839 296 LSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIK 375 (415)
Q Consensus 296 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~ 375 (415)
+++|.+++..+..++.+++|+.|++ ++|+. .+.+++|+.|++..|...+.+|.+++.++
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l--------------~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWL--------------HDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEEC--------------CSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEc--------------cCCCc-------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 8888887666656666666666655 44421 13455666666666666666665554443
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=4.3e-18 Score=156.43 Aligned_cols=193 Identities=20% Similarity=0.148 Sum_probs=96.6
Q ss_pred CcccEEEcCCcccccCcc-cccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839 150 KHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA 220 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 220 (415)
++|++|++++|.++.++. .+.++++|++|++++ ..++++++|++|++++|.+....+..++.+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 457777777777774443 555666666666655 12344444444444433333333333444444444444
Q ss_pred ccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEE
Q 043839 221 VHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLS 297 (415)
Q Consensus 221 ~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~ 297 (415)
.++. ..++. .++.+++|++|++++|. .... . +| .+..+ ++|++|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~-------------------~--------l~~~~~~l-~~L~~L~Ls 157 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNL--IQSF-------------------K--------LPEYFSNL-TNLEHLDLS 157 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC--CCCC-------------------C--------CCGGGGGC-TTCCEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCc--ccee-------------------c--------CchhhccC-CCCCEEECC
Confidence 4444 22221 24444444444444431 1110 0 34 45555 666666666
Q ss_pred ccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCC
Q 043839 298 NTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNL 377 (415)
Q Consensus 298 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L 377 (415)
+|.+++..+..++.+++|+.+.+ .|++++| .++.++.......+|+.|++++|...+..+..+..+++|
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l----------~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNL----------SLDLSLN-PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCE----------EEECCSS-CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred CCCCCcCCHHHhhhhhhccccce----------eeecCCC-cccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence 66655444444444444442221 4555555 455555444445567777777666543222334666777
Q ss_pred CeEEEe
Q 043839 378 CKLELH 383 (415)
Q Consensus 378 ~~L~l~ 383 (415)
+.|+++
T Consensus 227 ~~L~l~ 232 (276)
T 2z62_A 227 QKIWLH 232 (276)
T ss_dssp CEEECC
T ss_pred cEEEcc
Confidence 777776
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.5e-18 Score=172.52 Aligned_cols=206 Identities=16% Similarity=0.084 Sum_probs=136.0
Q ss_pred cCCcccEEEcCCcccccC-cccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839 148 KFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA 220 (415)
Q Consensus 148 ~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 220 (415)
.+++|++|++++|.++.+ |..++.+++|++|++++ ..++.+++|++|++++|.+. .+| ..++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE-EEE----ECTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC-CCC----CCCCcCEEEC
Confidence 344899999999999955 56788888888888887 33566677777777744332 222 2356666666
Q ss_pred ccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCC-CCCCCceEE
Q 043839 221 VHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEY-KFPPTLTQL 294 (415)
Q Consensus 221 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~-~lp~~L~~L 294 (415)
.+|. ..++. ..+++|+.|++++| ...+..|..++.+++|+.|++++ | ++ .| .+. .+ ++|+.|
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N------~l~~~~~~~l~~~l-~~L~~L 174 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL-N------EIDTVNFAELAASS-DTLEHL 174 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTT-S------CCCEEEGGGGGGGT-TTCCEE
T ss_pred cCCcCCCCCc--cccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCC-C------CCCCcChHHHhhhC-CcccEE
Confidence 6666 33332 23566666666666 33333344455555555555554 3 11 22 222 34 455555
Q ss_pred EEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839 295 SLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCI 374 (415)
Q Consensus 295 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l 374 (415)
++++|.+++. + . ...+++|++|++++| .++.+|..++.+++|+.|++++|... .+|..+..+
T Consensus 175 ~Ls~N~l~~~-~-~--------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l 236 (487)
T 3oja_A 175 NLQYNFIYDV-K-G--------------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (487)
T ss_dssp ECTTSCCCEE-E-C--------------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred ecCCCccccc-c-c--------------cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccC
Confidence 5555544321 1 0 234678888888998 67888888999999999999999877 588889999
Q ss_pred CCCCeEEEecCChh
Q 043839 375 KNLCKLELHWPQPH 388 (415)
Q Consensus 375 ~~L~~L~l~~c~~~ 388 (415)
++|+.|++++|+-.
T Consensus 237 ~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 237 QNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEcCCCCCc
Confidence 99999999998753
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=1.1e-19 Score=179.36 Aligned_cols=275 Identities=16% Similarity=0.100 Sum_probs=148.5
Q ss_pred ceeEEEEEeCCCCC-----ccCCCC--CCceeEEEeecCCCccccccchHHHhccCC----cccEEEcCCcccc-----c
Q 043839 101 NVKRCFILKDLTEF-----FPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFK----HLRVLNLGSAVLD-----L 164 (415)
Q Consensus 101 ~~r~l~l~~~~~~~-----~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~-----~ 164 (415)
.++.+.+. ++... .++... +++|++|.+.++... .......+..++ +|++|++++|.++ .
T Consensus 29 ~L~~L~L~-~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 29 QCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp TCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH---HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CccEEEcc-CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC---hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 45666666 55443 122222 577777777776652 112223334444 5777777777766 3
Q ss_pred CcccccCccCCceEecCcccc-------------cccccCcEEEecCCCCCCC----CCCcccCccccceeccccCC--C
Q 043839 165 YPPGLENLFHLKYLKLITPLL-------------KLMQKLMHLNFGSITMPSP----PNNYSSSLKDLIFISAVHPS--S 225 (415)
Q Consensus 165 lp~~i~~l~~L~~L~l~~~~i-------------~~l~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~l~~~~--~ 225 (415)
+|..+..+++|++|++++..+ ...++|++|++++|.+... ++..+..+++|++|++.++. .
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 466677777777777777111 1234677777775554432 23445556777777777765 1
Q ss_pred CCccccC-----CCCCCCeEEEecccCcchh----cHHHhhhccCCCcEEEeecCccc----cccccccc-CCCCCCCCc
Q 043839 226 CTPDILG-----RLPNVQTLRISGDLSYHHS----GVSKSLCELHKLECLKLVNEGKM----WQFSRMIL-SEYKFPPTL 291 (415)
Q Consensus 226 ~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~i----l~~l~Llp-~~~~lp~~L 291 (415)
..+..+. ..++|++|++++|. ... .++..+..+++|+.|++++ +.+ +.. +.+ ....+ ++|
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~--l~~~~~~~~-~~L 258 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCG--VTSDNCRDLCGIVASKASLRELALGS-NKLGDVGMAE--LCPGLLHPS-SRL 258 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSC--CBTTHHHHHHHHHHHCTTCCEEECCS-SBCHHHHHHH--HHHHHTSTT-CCC
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCC--CcHHHHHHHHHHHHhCCCccEEeccC-CcCChHHHHH--HHHHHhcCC-CCc
Confidence 1111121 24567777777763 222 2556666677777777766 311 000 012 22234 556
Q ss_pred eEEEEEccccCCC----CchhhcCCCCCCeEeecc---------------CC----------------------------
Q 043839 292 TQLSLSNTKLMED----PMPTLEKLPLLEVLKLKQ---------------NS---------------------------- 324 (415)
Q Consensus 292 ~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~---------------~~---------------------------- 324 (415)
++|++++|.++.. ++..+..+++|+.|++++ ..
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 6666666655432 234444555555555554 11
Q ss_pred CCCcccEEEeccCCCccce-EEcC----C-CccCccEEEEecCcccC----CChhhhcCCCCCCeEEEecCC
Q 043839 325 SFPLLKILHLKSMLWLEEW-TMGA----G-SMPKLESLILNPCAYLR----KLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 325 ~~~~L~~L~l~~~~~l~~l-~~~~----~-~l~~L~~L~l~~c~~~~----~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.+++|++|++++| .++.. +..+ . ..++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 339 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 339 QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1245555555555 22211 1111 1 15577777777776553 566666677777777777775
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=163.34 Aligned_cols=209 Identities=18% Similarity=0.126 Sum_probs=174.5
Q ss_pred CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcc-cccCcc
Q 043839 98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPP-GLENLF 173 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~ 173 (415)
.+..++.+.+. ++....+.. .+ +++|++|.+.++.. ..+.+..|.++++|++|++++|.++.+|. .+..++
T Consensus 62 ~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 62 ISTNTRLLNLH-ENQIQIIKVNSFKHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp CCTTCSEEECC-SCCCCEECTTTTSSCSSCCEEECCSSCC----CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCCCcEEEcc-CCcCCeeCHHHhhCCCCCCEEECCCCcC----CccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 45678889998 777765553 33 89999999999987 55666789999999999999999997775 588999
Q ss_pred CCceEecCc--------ccccccccCcEEEecCCCCCCCCCC-cccCccccceeccccCC-CCCccccCCCCCCCeEEEe
Q 043839 174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRIS 243 (415)
Q Consensus 174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~ 243 (415)
+|++|++++ ..+.++++|++|+++++.....++. .+..+++|++|++.++. ..+| .+..+++|+.|+++
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLS 215 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECT
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECC
Confidence 999999998 3577899999999997666666665 58899999999999999 6665 48899999999999
Q ss_pred cccCcchhcHHHhhhccCCCcEEEeecCccccccccc--c-c-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEe
Q 043839 244 GDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--I-L-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLK 319 (415)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--l-p-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 319 (415)
+| ...+..+..+..+++|+.|++++ + ++ + | .+..+ ++|+.|++++|.++...+..+..+++|+.|+
T Consensus 216 ~N--~l~~~~~~~~~~l~~L~~L~L~~-n------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 216 GN--HLSAIRPGSFQGLMHLQKLWMIQ-S------QIQVIERNAFDNL-QSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp TS--CCCEECTTTTTTCTTCCEEECTT-C------CCCEECTTSSTTC-TTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred CC--ccCccChhhhccCccCCEEECCC-C------ceeEEChhhhcCC-CCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 98 46666678889999999999988 5 33 3 4 77888 9999999999999877777788899999999
Q ss_pred ecc
Q 043839 320 LKQ 322 (415)
Q Consensus 320 l~~ 322 (415)
+++
T Consensus 286 L~~ 288 (440)
T 3zyj_A 286 LHH 288 (440)
T ss_dssp CCS
T ss_pred cCC
Confidence 876
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.8e-18 Score=162.00 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=100.3
Q ss_pred cCCcccEEEcCCcccc-cCcccc--cCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCc-----cccceec
Q 043839 148 KFKHLRVLNLGSAVLD-LYPPGL--ENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSL-----KDLIFIS 219 (415)
Q Consensus 148 ~~~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l-----~~L~~L~ 219 (415)
++++|++|++++|.++ .+|..+ ..+++|++|++++ |.+... |..++.+ ++|++|+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~----------------N~l~~~-~~~~~~l~~~~~~~L~~L~ 155 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN----------------VSWATR-DAWLAELQQWLKPGLKVLS 155 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES----------------CBCSSS-SSHHHHHHTTCCTTCCEEE
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC----------------CCCcch-hHHHHHHHHhhcCCCcEEE
Confidence 4555555555555555 455443 4444555555444 333332 4444444 4555555
Q ss_pred cccCC-CCCc-cccCCCCCCCeEEEecccCcchhc--HHHhh--hccCCCcEEEeecCccccccccccc--CCCCCCCCc
Q 043839 220 AVHPS-SCTP-DILGRLPNVQTLRISGDLSYHHSG--VSKSL--CELHKLECLKLVNEGKMWQFSRMIL--SEYKFPPTL 291 (415)
Q Consensus 220 l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~il~~l~Llp--~~~~lp~~L 291 (415)
+.++. ..++ ..++.+++|++|++++| ...+. ++..+ ..+++|+.|++++ +.+-. +.-++ .+..+ ++|
T Consensus 156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~-~~~~~~~~~~~l-~~L 230 (312)
T 1wwl_A 156 IAQAHSLNFSCEQVRVFPALSTLDLSDN--PELGERGLISALCPLKFPTLQVLALRN-AGMET-PSGVCSALAAAR-VQL 230 (312)
T ss_dssp EESCSCCCCCTTTCCCCSSCCEEECCSC--TTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCC-HHHHHHHHHHTT-CCC
T ss_pred eeCCCCccchHHHhccCCCCCEEECCCC--CcCcchHHHHHHHhccCCCCCEEECCC-CcCcc-hHHHHHHHHhcC-CCC
Confidence 55554 2222 44455555555555554 12221 22333 4445555555544 21100 00011 12234 455
Q ss_pred eEEEEEccccCCCCc-hhhcCCCCCCeEeecc-------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcc
Q 043839 292 TQLSLSNTKLMEDPM-PTLEKLPLLEVLKLKQ-------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAY 363 (415)
Q Consensus 292 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~-------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 363 (415)
++|++++|.+.+..+ ..+..+++|++|++++ ...+++|++|++++| .++.+|. +..+++|+.|++++|+.
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 555555555544332 3334455555555554 111267889999998 6777776 89999999999999987
Q ss_pred cC
Q 043839 364 LR 365 (415)
Q Consensus 364 ~~ 365 (415)
.+
T Consensus 309 ~~ 310 (312)
T 1wwl_A 309 LD 310 (312)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=2.4e-17 Score=162.37 Aligned_cols=209 Identities=19% Similarity=0.149 Sum_probs=173.8
Q ss_pred CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCccc-ccCcc
Q 043839 98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPG-LENLF 173 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~ 173 (415)
.+..++.+.+. ++....+.. .+ +++|+.|.+.++.. ..+.+..|.++++|++|++++|.++.+|.. +..++
T Consensus 73 ~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 73 IPSNTRYLNLM-ENNIQMIQADTFRHLHHLEVLQLGRNSI----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp CCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCCCccEEECc-CCcCceECHHHcCCCCCCCEEECCCCcc----CCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 35678999998 777765543 33 99999999999987 556667899999999999999999977654 78899
Q ss_pred CCceEecCc--------ccccccccCcEEEecCCCCCCCCCC-cccCccccceeccccCC-CCCccccCCCCCCCeEEEe
Q 043839 174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRIS 243 (415)
Q Consensus 174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~ 243 (415)
+|++|++++ ..+.++++|++|+++++.....++. .+..+++|++|++.++. ..+| .+..+++|+.|+++
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMS 226 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECT
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECc
Confidence 999999998 4577899999999997677666665 48899999999999999 5554 58899999999999
Q ss_pred cccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEe
Q 043839 244 GDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLK 319 (415)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 319 (415)
+| ...+..+..+..+++|+.|++++ + ++ .| .+..+ ++|+.|++++|.++...+..+..+++|+.|+
T Consensus 227 ~N--~l~~~~~~~~~~l~~L~~L~L~~-n------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 227 GN--HFPEIRPGSFHGLSSLKKLWVMN-S------QVSLIERNAFDGL-ASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp TS--CCSEECGGGGTTCTTCCEEECTT-S------CCCEECTTTTTTC-TTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred CC--cCcccCcccccCccCCCEEEeCC-C------cCceECHHHhcCC-CCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 98 56666688899999999999988 5 33 34 78888 9999999999998876677788888999888
Q ss_pred ecc
Q 043839 320 LKQ 322 (415)
Q Consensus 320 l~~ 322 (415)
+++
T Consensus 297 L~~ 299 (452)
T 3zyi_A 297 LHH 299 (452)
T ss_dssp CCS
T ss_pred ccC
Confidence 876
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=1.5e-18 Score=176.76 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=160.6
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-----------ccccccc
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-----------PLLKLMQ 189 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-----------~~i~~l~ 189 (415)
+++|++|.+.++.........++..+.++++|++|++++|.+..+|..+.++++|++|+++. ..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 44555555544443210012334445666777777777766666666666666777776653 2445566
Q ss_pred cCcEEEecCCCCCCCCCCcccCccccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEE
Q 043839 190 KLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECL 266 (415)
Q Consensus 190 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 266 (415)
+|+.|++. ......+|..+..+++|++|++.+|. ..+...+..+++|++|++.++ .....++.....+++|+.|
T Consensus 271 ~L~~L~l~-~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 271 KLCRLGLS-YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TCCEEEET-TCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEE
T ss_pred cccccCcc-ccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEE
Confidence 67777776 34455667777778888888888876 222334577888888888754 3334444455667778888
Q ss_pred Eeec----------Cccc--------------cccccc--------cc-CCC-CCCCCceEEEEEc----cccCCC----
Q 043839 267 KLVN----------EGKM--------------WQFSRM--------IL-SEY-KFPPTLTQLSLSN----TKLMED---- 304 (415)
Q Consensus 267 ~l~~----------~~~i--------------l~~l~L--------lp-~~~-~lp~~L~~L~l~~----~~l~~~---- 304 (415)
+++. ++.+ |+.|.+ .+ .+. .+ ++|++|++++ +.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHH
Confidence 8872 1221 111111 11 222 25 6778888863 344332
Q ss_pred -CchhhcCCCCCCeEeec---c----------CCCCCcccEEEeccCCCcc--ceEEcCCCccCccEEEEecCcccCC-C
Q 043839 305 -PMPTLEKLPLLEVLKLK---Q----------NSSFPLLKILHLKSMLWLE--EWTMGAGSMPKLESLILNPCAYLRK-L 367 (415)
Q Consensus 305 -~~~~l~~l~~L~~L~l~---~----------~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~~~~-l 367 (415)
.+..+..+++|+.|+++ + ...+++|++|++++|. ++ .++..+.++++|+.|++++|+.... +
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 22335568888888883 2 2347788888888884 43 3444567889999999999985432 4
Q ss_pred hhhhcCCCCCCeEEEecCC
Q 043839 368 PEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 368 p~~l~~l~~L~~L~l~~c~ 386 (415)
+..+..+++|++|++++|+
T Consensus 506 ~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhcCccCeeECcCCc
Confidence 5555678999999999987
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=4.5e-18 Score=167.41 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=92.0
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCc---cccccc-ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---PLLKLM-QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS- 224 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---~~i~~l-~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~- 224 (415)
++|++|++++|.++.+|.. +.+|++|++++ ..+..+ ++|++|++++|.+. .+| .++.+++|++|++.++.
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcC
Confidence 5677777777777666643 36777777777 223333 57888888855554 477 58888888888888887
Q ss_pred CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCC
Q 043839 225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMED 304 (415)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~ 304 (415)
..+|..+ ++|++|++++|. . ..+| .++.+++|+.|++++ +.+-. +| ..|++|++|++++|.+. .
T Consensus 166 ~~lp~~~---~~L~~L~L~~n~--l-~~l~-~~~~l~~L~~L~l~~-N~l~~----l~---~~~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 166 KKLPDLP---PSLEFIAAGNNQ--L-EELP-ELQNLPFLTAIYADN-NSLKK----LP---DLPLSLESIVAGNNILE-E 229 (454)
T ss_dssp SCCCCCC---TTCCEEECCSSC--C-SSCC-CCTTCTTCCEEECCS-SCCSS----CC---CCCTTCCEEECCSSCCS-S
T ss_pred cccCCCc---ccccEEECcCCc--C-CcCc-cccCCCCCCEEECCC-CcCCc----CC---CCcCcccEEECcCCcCC-c
Confidence 5555443 478888888872 2 2344 577788888888877 31100 11 11245555555555543 2
Q ss_pred CchhhcCCCCCCeEeecc
Q 043839 305 PMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 305 ~~~~l~~l~~L~~L~l~~ 322 (415)
+| .++.+++|++|++++
T Consensus 230 lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp CC-CCTTCTTCCEEECCS
T ss_pred cc-ccCCCCCCCEEECCC
Confidence 33 244555555555544
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=2.6e-17 Score=151.24 Aligned_cols=193 Identities=21% Similarity=0.189 Sum_probs=150.7
Q ss_pred cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCc--------cccc
Q 043839 116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLIT--------PLLK 186 (415)
Q Consensus 116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~--------~~i~ 186 (415)
++....+++++|.+.++.. ..+.+..+.++++|++|++++|.++.++ ..+.++++|++|++++ ..++
T Consensus 22 ip~~l~~~l~~L~ls~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 22 IPDNLPFSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp CCSSSCTTCCEEECTTCCC----CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cCCCCCCCccEEECCCCcc----cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 4554467899999999887 4555567899999999999999998554 4788999999999998 4578
Q ss_pred ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-C--CCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCC
Q 043839 187 LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-S--CTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKL 263 (415)
Q Consensus 187 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 263 (415)
++++|++|++++|......+..++.+++|++|++.++. . .+|..++.+++|++|++++| ...+..+..+..+++|
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS--CCCEECGGGGHHHHTC
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC--CCCcCCHHHhhhhhhc
Confidence 89999999999776666555579999999999999998 3 36889999999999999998 4444444556666666
Q ss_pred c----EEEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839 264 E----CLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 264 ~----~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 322 (415)
+ .|++++ + ++ +| ..... .+|+.|++++|.+++..+..++.+++|+.|++++
T Consensus 176 ~~l~l~L~ls~-n------~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 176 PLLNLSLDLSL-N------PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp TTCCEEEECCS-S------CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred cccceeeecCC-C------cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 6 788877 4 22 55 44555 6899999999998766555667777777776654
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=7.3e-20 Score=180.65 Aligned_cols=277 Identities=15% Similarity=0.010 Sum_probs=193.4
Q ss_pred ceeEEEEEeCCCCC-----ccCCCC--CCceeEEEeecCCCcccccc-chHHHhccCCcccEEEcCCccccc-----Ccc
Q 043839 101 NVKRCFILKDLTEF-----FPLEHS--DMYLQSFLNHSSESDHLAGI-DCENFCKKFKHLRVLNLGSAVLDL-----YPP 167 (415)
Q Consensus 101 ~~r~l~l~~~~~~~-----~~~~~~--~~~Lr~L~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~-----lp~ 167 (415)
.++.+.+. ++... .++... +++|++|.+.++........ +........++|++|++++|.++. ++.
T Consensus 86 ~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQ-NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECT-TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEcc-CCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 57788887 66544 223333 78999999988876320001 111123346679999999998772 456
Q ss_pred cccCccCCceEecCc--------cccc-----ccccCcEEEecCCCCCCC----CCCcccCccccceeccccCC-CC---
Q 043839 168 GLENLFHLKYLKLIT--------PLLK-----LMQKLMHLNFGSITMPSP----PNNYSSSLKDLIFISAVHPS-SC--- 226 (415)
Q Consensus 168 ~i~~l~~L~~L~l~~--------~~i~-----~l~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~l~~~~-~~--- 226 (415)
.+..+++|++|++++ ..+. ..++|++|++++|.+... ++..+..+++|++|++.++. ..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 667788999999998 1122 255899999997765543 56667788999999999987 11
Q ss_pred --Cccc-cCCCCCCCeEEEecccCcchh----cHHHhhhccCCCcEEEeecCccc----cccccccc-CCC-CCCCCceE
Q 043839 227 --TPDI-LGRLPNVQTLRISGDLSYHHS----GVSKSLCELHKLECLKLVNEGKM----WQFSRMIL-SEY-KFPPTLTQ 293 (415)
Q Consensus 227 --~~~~-l~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~i----l~~l~Llp-~~~-~lp~~L~~ 293 (415)
+... ...+++|++|++++|. ... .++..+..+++|+.|++++ +.+ ... ++ .+. .. ++|++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~---l~~~l~~~~-~~L~~ 317 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECG--ITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARL---LCETLLEPG-CQLES 317 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC--CCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHH---HHHHHTSTT-CCCCE
T ss_pred HHHHHHHhcCCCCceEEECcCCC--CCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHH---HHHHhccCC-cccee
Confidence 2222 3468999999999983 333 2677888899999999998 522 000 22 222 33 69999
Q ss_pred EEEEccccCCC----CchhhcCCCCCCeEeecc---------------CCCCCcccEEEeccCCCcc-----ceEEcCCC
Q 043839 294 LSLSNTKLMED----PMPTLEKLPLLEVLKLKQ---------------NSSFPLLKILHLKSMLWLE-----EWTMGAGS 349 (415)
Q Consensus 294 L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~---------------~~~~~~L~~L~l~~~~~l~-----~l~~~~~~ 349 (415)
|++++|.+++. .+..+..+++|+.|++++ ....++|++|++++| .++ .++..+..
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLA 396 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHH
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHh
Confidence 99999998765 456677889999999987 122679999999999 455 67777788
Q ss_pred ccCccEEEEecCcccCC----Chhhhc-CCCCCCeEEEecCC
Q 043839 350 MPKLESLILNPCAYLRK----LPEELW-CIKNLCKLELHWPQ 386 (415)
Q Consensus 350 l~~L~~L~l~~c~~~~~----lp~~l~-~l~~L~~L~l~~c~ 386 (415)
+++|++|++++|+.... +...+. ...+|+.|++.++.
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 99999999999986542 122232 24578888887754
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.2e-18 Score=164.62 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=104.5
Q ss_pred HHhccC--CcccEEEcCCcccccCcccccCccCCceEecCc---------ccccccccCcEEEecCCCCCCCCCCcccCc
Q 043839 144 NFCKKF--KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---------PLLKLMQKLMHLNFGSITMPSPPNNYSSSL 212 (415)
Q Consensus 144 ~~~~~~--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l 212 (415)
..+..+ +++++|+++++.+...+..+..+++|++|++++ ..+..+++|++|++++|......|..++.+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 344444 667777777776664444556666777777666 234556677777777565555566666677
Q ss_pred cccceeccccCC--C--CCccccCCCCCCCeEEEecccCcchhcHHHhhhccC-CCcEEEeecCcc--cc-ccccccc-C
Q 043839 213 KDLIFISAVHPS--S--CTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH-KLECLKLVNEGK--MW-QFSRMIL-S 283 (415)
Q Consensus 213 ~~L~~L~l~~~~--~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~--il-~~l~Llp-~ 283 (415)
++|++|++.+|. . .++..+..+++|++|++++|..-....++..+..++ +|+.|++++ +. +- .. +| .
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~-~~~~~~~~~---l~~~ 217 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-YRKNLQKSD---LSTL 217 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS-CGGGSCHHH---HHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC-CcccCCHHH---HHHH
Confidence 777777777773 2 355556677777777777762122223566666777 777777766 20 00 00 34 4
Q ss_pred CCCCCCCceEEEEEccc-cCCCCchhhcCCCCCCeEeec
Q 043839 284 EYKFPPTLTQLSLSNTK-LMEDPMPTLEKLPLLEVLKLK 321 (415)
Q Consensus 284 ~~~lp~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~ 321 (415)
+..+ ++|++|++++|. +++..+..++.+++|+.|+++
T Consensus 218 ~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 218 VRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp HHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred HhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 4556 777777777776 555555566655555555553
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=6.1e-17 Score=149.85 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=51.7
Q ss_pred hccCCcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccce
Q 043839 146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIF 217 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 217 (415)
+.++++++.++++++.++.+|..+. +++++|++++ ..+.++++|++|++++|.+ ..++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCE
Confidence 5667778888888887777776553 4566666555 2344445555555553322 222221 44455555
Q ss_pred eccccCC-CCCccccCCCCCCCeEEEecc
Q 043839 218 ISAVHPS-SCTPDILGRLPNVQTLRISGD 245 (415)
Q Consensus 218 L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 245 (415)
|+++++. ..+|..+..+++|+.|++++|
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 5555554 444444445555555555554
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.3e-16 Score=146.19 Aligned_cols=194 Identities=20% Similarity=0.191 Sum_probs=101.2
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP 228 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~ 228 (415)
...+.++++++.++.+|..+. .+|++|++++ |.+....+..++.+++|++|++.++. ..++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~----------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQS----------------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCS----------------SCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcC----------------CCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 357788888888888876553 3455554443 33333233345555555555555555 3333
Q ss_pred cc-cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCC
Q 043839 229 DI-LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 229 ~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~ 303 (415)
.. +..+++|++|+++++ ......+..+..+++|+.|++++ + ++ +| .+..+ ++|++|++++|.++.
T Consensus 78 ~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDN--KLQALPIGVFDQLVNLAELRLDR-N------QLKSLPPRVFDSL-TKLTYLSLGYNELQS 147 (270)
T ss_dssp TTTTSSCTTCCEEECCSS--CCCCCCTTTTTTCSSCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCCCC
T ss_pred hhhhcCCCCCCEEECCCC--cCCcCCHhHcccccCCCEEECCC-C------ccCeeCHHHhCcC-cCCCEEECCCCcCCc
Confidence 32 345555555555555 22222222334455555555554 2 11 23 34556 666666666666654
Q ss_pred CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEE
Q 043839 304 DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382 (415)
Q Consensus 304 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l 382 (415)
..+..++.+++|+ +|++++| .++.++. .+..+++|+.|++++|......+..+..+++|+.|++
T Consensus 148 ~~~~~~~~l~~L~--------------~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 148 LPKGVFDKLTSLK--------------ELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp CCTTTTTTCTTCC--------------EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCHhHccCCcccc--------------eeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 4333444444443 3344444 3444443 3556666666666666554322234556666666666
Q ss_pred ecCC
Q 043839 383 HWPQ 386 (415)
Q Consensus 383 ~~c~ 386 (415)
+++|
T Consensus 213 ~~N~ 216 (270)
T 2o6q_A 213 QENP 216 (270)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6554
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1.2e-18 Score=168.05 Aligned_cols=220 Identities=15% Similarity=0.129 Sum_probs=139.7
Q ss_pred HHHhccCCcccEEEcCCcccc-c----CcccccCccCCceEecCc------------------ccccccccCcEEEecCC
Q 043839 143 ENFCKKFKHLRVLNLGSAVLD-L----YPPGLENLFHLKYLKLIT------------------PLLKLMQKLMHLNFGSI 199 (415)
Q Consensus 143 ~~~~~~~~~L~~L~l~~~~~~-~----lp~~i~~l~~L~~L~l~~------------------~~i~~l~~L~~L~l~~~ 199 (415)
...+..+++|++|++++|.++ . ++..+..+++|++|++++ ..+.++++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 344566667777777777665 2 333355666666666654 12356778888888866
Q ss_pred CCCC----CCCCcccCccccceeccccCC------CCCccccCCC---------CCCCeEEEecccCcch-hcHH---Hh
Q 043839 200 TMPS----PPNNYSSSLKDLIFISAVHPS------SCTPDILGRL---------PNVQTLRISGDLSYHH-SGVS---KS 256 (415)
Q Consensus 200 ~~~~----~~p~~i~~l~~L~~L~l~~~~------~~~~~~l~~l---------~~L~~L~l~~~~~~~~-~~~~---~~ 256 (415)
.+.. .+|..+..+++|++|++.+|. ..++..+..+ ++|++|++++|. .. ..++ ..
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~ 182 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--LENGSMKEWAKT 182 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC--CTGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC--CCcHHHHHHHHH
Confidence 6655 356667778888888888877 1233334444 788888888873 33 3333 56
Q ss_pred hhccCCCcEEEeecCccccc-cc-cccc-CCCCCCCCceEEEEEccccC----CCCchhhcCCCCCCeEeecc-------
Q 043839 257 LCELHKLECLKLVNEGKMWQ-FS-RMIL-SEYKFPPTLTQLSLSNTKLM----EDPMPTLEKLPLLEVLKLKQ------- 322 (415)
Q Consensus 257 l~~l~~L~~L~l~~~~~il~-~l-~Llp-~~~~lp~~L~~L~l~~~~l~----~~~~~~l~~l~~L~~L~l~~------- 322 (415)
+..+++|+.|++++ +.+-. .+ .++| .+..+ ++|++|++++|.++ ..++..+..+++|+.|++++
T Consensus 183 l~~~~~L~~L~L~~-n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCS-SCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcC-CCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 77788888888887 42100 00 0144 66677 88888888888774 34566677777777777765
Q ss_pred ---------CCCCCcccEEEeccCCCccc-----eEEcC-CCccCccEEEEecCcccCCC
Q 043839 323 ---------NSSFPLLKILHLKSMLWLEE-----WTMGA-GSMPKLESLILNPCAYLRKL 367 (415)
Q Consensus 323 ---------~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~~~~l 367 (415)
.+.+++|++|++++|. ++. +|..+ ..+++|+.|++++|+..+..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 0236677777777773 333 55554 45677777777777766544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=8.9e-17 Score=148.77 Aligned_cols=186 Identities=19% Similarity=0.186 Sum_probs=130.1
Q ss_pred ccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CC-CccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839 185 LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SC-TPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK 262 (415)
Q Consensus 185 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 262 (415)
+++++++++++++ ++....+|.++. +++++|++.++. .. .+..+..+++|+.|+++++. ...++.. +.+++
T Consensus 6 ~~~l~~l~~l~~~-~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~-~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCD-KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVD-GTLPV 78 (290)
T ss_dssp EECSTTCCEEECT-TSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC---CCEEECC-SCCTT
T ss_pred ccccCCccEEECC-CCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc---cCcccCC-CCCCc
Confidence 4455666666666 333445665553 567777777776 33 34556777777777777762 2222222 56677
Q ss_pred CcEEEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcc
Q 043839 263 LECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLL 329 (415)
Q Consensus 263 L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L 329 (415)
|+.|++++ + ++ +| .+..+ ++|++|++++|.++...+..++.+++|+.|++++ ...+++|
T Consensus 79 L~~L~Ls~-N------~l~~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 79 LGTLDLSH-N------QLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CCEEECCS-S------CCSSCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCEEECCC-C------cCCcCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 77777776 4 22 66 66677 7777788777777665566677777788877776 2356788
Q ss_pred cEEEeccCCCccceEEc-CCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 330 KILHLKSMLWLEEWTMG-AGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 330 ~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
+.|++++| .++.+|.. +..+++|+.|++++|... .+|.++...++|+.|++.++|.
T Consensus 151 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 88888988 67778755 578999999999999776 7898888899999999997663
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=1.6e-16 Score=162.57 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=90.1
Q ss_pred CCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcC
Q 043839 233 RLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEK 311 (415)
Q Consensus 233 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~ 311 (415)
.+++++.++++.+ ......+..+..+++|+.|++++ +.+.+. +.| .+..+ ++|+.|++++|.+++..+..++.
T Consensus 443 ~l~~l~~l~ls~n--~l~~~~~~~~~~~~~L~~L~Ls~-N~~~~~--~~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 443 SLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG-NSFQEN--FLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp TCTTCCEEECTTS--CCEECCTTTTTTCTTCCEEECTT-CEEGGG--EECSCCTTC-TTCCEEECTTSCCCEECTTTTTT
T ss_pred ccccccccccccc--ccccccccccccchhhhhhhhhh-cccccc--cCchhhhhc-cccCEEECCCCccCCcChHHHcC
Confidence 3444444444444 22333344455566667776665 311110 056 78889 99999999999998888889999
Q ss_pred CCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCc-cCccEEEEecCcccC
Q 043839 312 LPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSM-PKLESLILNPCAYLR 365 (415)
Q Consensus 312 l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~~~ 365 (415)
+++|++|++++ ...+++|++|++++|...+..|..+..+ ++|+.|++++|+...
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999998 3567899999999994444445667777 689999999998764
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=2.3e-16 Score=160.43 Aligned_cols=233 Identities=15% Similarity=0.003 Sum_probs=182.0
Q ss_pred CCceeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceE
Q 043839 99 LANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYL 178 (415)
Q Consensus 99 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 178 (415)
+..++.+.+. ++....++. .+++|++|.+.++... .+.. .+++|++|++++|.++.+|. .+.+|++|
T Consensus 60 ~~~L~~L~L~-~N~l~~lp~-~l~~L~~L~Ls~N~l~----~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 60 PAHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLT----SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp CTTCSEEEEC-SCCCSCCCC-CCTTCCEEEECSCCCS----CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCCcEEEec-CCCCCCCCC-cCCCCCEEEcCCCcCC----cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 4678999999 777665554 4889999999999873 3322 78999999999999998887 57899999
Q ss_pred ecCccccc----ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcH
Q 043839 179 KLITPLLK----LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGV 253 (415)
Q Consensus 179 ~l~~~~i~----~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 253 (415)
++++..+. .+++|++|++++|.+ ..+|.. +.+|+.|++.++. ..+| ..+++|+.|++++|. ...+
T Consensus 127 ~L~~N~l~~lp~~l~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~---l~~l 196 (622)
T 3g06_A 127 WIFGNQLTSLPVLPPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ---LASL 196 (622)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC---CSCC
T ss_pred ECCCCCCCcCCCCCCCCCEEECcCCcC-CCcCCc---cCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC---CCCC
Confidence 99983332 248999999995544 456653 4678999999998 6677 557999999999983 3334
Q ss_pred HHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc------CCC
Q 043839 254 SKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------NSS 325 (415)
Q Consensus 254 ~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------~~~ 325 (415)
|. .+++|+.|++++ | ++ +| ..+ ++|+.|++++|.+++ +| ..+++|+.|++++ ...
T Consensus 197 ~~---~~~~L~~L~L~~-N------~l~~l~--~~~-~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~~ 259 (622)
T 3g06_A 197 PT---LPSELYKLWAYN-N------RLTSLP--ALP-SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPML 259 (622)
T ss_dssp CC---CCTTCCEEECCS-S------CCSSCC--CCC-TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCC
T ss_pred CC---ccchhhEEECcC-C------cccccC--CCC-CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCcc
Confidence 33 347899999988 4 22 33 224 899999999999865 44 5679999999998 335
Q ss_pred CCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhc
Q 043839 326 FPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELW 372 (415)
Q Consensus 326 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~ 372 (415)
+++|+.|++++| .++.+|..++.+++|+.|++++|+..+..|..+.
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 678999999999 7779998899999999999999998876666544
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=2e-16 Score=147.66 Aligned_cols=182 Identities=19% Similarity=0.231 Sum_probs=88.4
Q ss_pred CCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceecccc
Q 043839 149 FKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVH 222 (415)
Q Consensus 149 ~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 222 (415)
+++|++|+++++.++.+| .+..+++|++|++++ ..+.++++|++|++++|.+ ..++ .++.+++|++|++.+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC-CCch-hhcCCCCCCEEECCC
Confidence 334444444444444333 233444444444433 1133444455555553332 2232 355666666666666
Q ss_pred CC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEcc
Q 043839 223 PS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNT 299 (415)
Q Consensus 223 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~ 299 (415)
+. ..++. +..+++|+.|++++|. .. .++. +..+++|+.|++++ + ++ ++.+..+ ++|+.|++++|
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~--l~-~~~~-l~~l~~L~~L~l~~-n------~l~~~~~l~~l-~~L~~L~l~~n 183 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQ--IT-NISP-LAGLTNLQYLSIGN-A------QVSDLTPLANL-SKLTTLKADDN 183 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSC--CC-CCGG-GGGCTTCCEEECCS-S------CCCCCGGGTTC-TTCCEEECCSS
T ss_pred CCCCCchh-hcCCCCCCEEECCCCc--cC-cCcc-ccCCCCccEEEccC-C------cCCCChhhcCC-CCCCEEECCCC
Confidence 65 33332 5666666666666652 22 2222 55555666666555 3 11 2334455 66666666666
Q ss_pred ccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCccc
Q 043839 300 KLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL 364 (415)
Q Consensus 300 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~ 364 (415)
.+.+. +. +.. +++|++|++++| .++.++ .+..+++|+.|++++|+..
T Consensus 184 ~l~~~-~~-l~~--------------l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 184 KISDI-SP-LAS--------------LPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCC-GG-GGG--------------CTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEEEEE
T ss_pred ccCcC-hh-hcC--------------CCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCCeee
Confidence 65332 11 333 334444444555 344443 2556666666666666654
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=2.1e-18 Score=166.42 Aligned_cols=229 Identities=16% Similarity=0.069 Sum_probs=172.7
Q ss_pred cccEEEcCCcccccCcccccCccCCceEecCc------------ccccccccCcEEEecCCCC---CCCCCCcc------
Q 043839 151 HLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------------PLLKLMQKLMHLNFGSITM---PSPPNNYS------ 209 (415)
Q Consensus 151 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------------~~i~~l~~L~~L~l~~~~~---~~~~p~~i------ 209 (415)
.|++..+....+..++..+..+++|++|++++ ..+.++++|++|++++|.. ...+|.++
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 34444455555667888888999999999999 2366899999999995432 33456555
Q ss_pred -cCccccceeccccCC-C-----CCccccCCCCCCCeEEEecccCcchh----cHHHhhhcc---------CCCcEEEee
Q 043839 210 -SSLKDLIFISAVHPS-S-----CTPDILGRLPNVQTLRISGDLSYHHS----GVSKSLCEL---------HKLECLKLV 269 (415)
Q Consensus 210 -~~l~~L~~L~l~~~~-~-----~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l---------~~L~~L~l~ 269 (415)
..+++|++|+++++. . .++..+..+++|++|++++| .... .++..+..+ ++|+.|+++
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN--GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS--CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC--CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 688999999999998 3 36778889999999999999 3433 334445555 899999999
Q ss_pred cCccccccccccc----CCCCCCCCceEEEEEccccCCC----Cch-hhcCCCCCCeEeecc--------------CCCC
Q 043839 270 NEGKMWQFSRMIL----SEYKFPPTLTQLSLSNTKLMED----PMP-TLEKLPLLEVLKLKQ--------------NSSF 326 (415)
Q Consensus 270 ~~~~il~~l~Llp----~~~~lp~~L~~L~l~~~~l~~~----~~~-~l~~l~~L~~L~l~~--------------~~~~ 326 (415)
+ +.+-.. . +| .+..+ ++|++|++++|.++.. ..+ .+..+++|+.|++++ ...+
T Consensus 168 ~-n~l~~~-~-~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 168 R-NRLENG-S-MKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp S-SCCTGG-G-HHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred C-CCCCcH-H-HHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 8 421000 0 22 34467 8999999999988532 233 788999999999987 3567
Q ss_pred CcccEEEeccCCCccc-----eEEcC--CCccCccEEEEecCcccC----CChhhh-cCCCCCCeEEEecCC
Q 043839 327 PLLKILHLKSMLWLEE-----WTMGA--GSMPKLESLILNPCAYLR----KLPEEL-WCIKNLCKLELHWPQ 386 (415)
Q Consensus 327 ~~L~~L~l~~~~~l~~-----l~~~~--~~l~~L~~L~l~~c~~~~----~lp~~l-~~l~~L~~L~l~~c~ 386 (415)
++|++|++++|. ++. ++..+ +.+++|+.|++++|.... .+|..+ .++++|+.|++++|+
T Consensus 244 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 244 PNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 899999999995 442 34444 459999999999998876 488877 668999999999986
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=6.8e-17 Score=148.15 Aligned_cols=200 Identities=17% Similarity=0.153 Sum_probs=123.6
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP 223 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 223 (415)
..+..+++.++.+... .....+.+|+.|++++ +.++.+++|++|++++|.+.. + ..++.+++|++|++.++
T Consensus 19 ~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTS
T ss_pred HHHHHHHhcCcccccc-cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCC
Confidence 3444556666655433 2345677777777776 456667777777777554432 3 35667777777777777
Q ss_pred C-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEE
Q 043839 224 S-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLS 297 (415)
Q Consensus 224 ~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~ 297 (415)
. ..++ ..++.+++|++|++++| ...+..+..+..+++|+.|++++ + ++ +| .+..+ ++|+.|+++
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~-n------~l~~~~~~~~~~l-~~L~~L~l~ 165 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVEN--QLQSLPDGVFDKLTNLTYLNLAH-N------QLQSLPKGVFDKL-TNLTELDLS 165 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECC
T ss_pred ccCccChhHhcCCcCCCEEECCCC--cCCccCHHHhccCCCCCEEECCC-C------ccCccCHHHhccC-ccCCEEECC
Confidence 6 4333 33567777777777776 33333334456666666666666 3 22 33 34566 666666666
Q ss_pred ccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCChhhhcCCCC
Q 043839 298 NTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLPEELWCIKN 376 (415)
Q Consensus 298 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~ 376 (415)
+|.+++..+..++. +++|++|++++| .++.++. .++.+++|+.|++++|+..+. ++.
T Consensus 166 ~n~l~~~~~~~~~~--------------l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~ 223 (272)
T 3rfs_A 166 YNQLQSLPEGVFDK--------------LTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPG 223 (272)
T ss_dssp SSCCCCCCTTTTTT--------------CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTT
T ss_pred CCCcCccCHHHhcC--------------CccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcH
Confidence 66665444433443 456666666777 5565554 478999999999999987754 345
Q ss_pred CCeEEEec
Q 043839 377 LCKLELHW 384 (415)
Q Consensus 377 L~~L~l~~ 384 (415)
|+.++++.
T Consensus 224 l~~l~~~~ 231 (272)
T 3rfs_A 224 IRYLSEWI 231 (272)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 56555543
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=2e-16 Score=147.75 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=106.0
Q ss_pred cCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEE
Q 043839 170 ENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRI 242 (415)
Q Consensus 170 ~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l 242 (415)
..+.+|++|++++ +.+..+++|++|++++|.+ ..++. ++.+++|++|++.++. ..++ .+..+++|+.|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 4456666666665 3445555566666653332 23333 5555556666555555 3332 4555555555555
Q ss_pred ecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEee
Q 043839 243 SGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKL 320 (415)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 320 (415)
++|. . ..++ .+..+++|+.|++++ + ++ ++.+..+ ++|+.|++++|.+++ .+. +
T Consensus 115 ~~n~--l-~~~~-~l~~l~~L~~L~l~~-n------~l~~~~~l~~l-~~L~~L~l~~n~l~~-~~~-l----------- 169 (308)
T 1h6u_A 115 TSTQ--I-TDVT-PLAGLSNLQVLYLDL-N------QITNISPLAGL-TNLQYLSIGNAQVSD-LTP-L----------- 169 (308)
T ss_dssp TTSC--C-CCCG-GGTTCTTCCEEECCS-S------CCCCCGGGGGC-TTCCEEECCSSCCCC-CGG-G-----------
T ss_pred CCCC--C-CCch-hhcCCCCCCEEECCC-C------ccCcCccccCC-CCccEEEccCCcCCC-Chh-h-----------
Confidence 5552 1 1122 244555555555554 2 11 2233344 555555555554432 111 2
Q ss_pred ccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 321 KQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 321 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
..+++|++|++++| .++.++. +..+++|+.|++++|... .++ .+..+++|+.|++++++-
T Consensus 170 ---~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 170 ---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEEEEE
T ss_pred ---cCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCccC-ccc-cccCCCCCCEEEccCCee
Confidence 34566777777887 5666653 789999999999999876 455 388999999999998763
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=7.3e-17 Score=164.20 Aligned_cols=237 Identities=15% Similarity=0.024 Sum_probs=128.8
Q ss_pred HHhccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCC---CCCCCc
Q 043839 144 NFCKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMP---SPPNNY 208 (415)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~---~~~p~~ 208 (415)
..+..+++|++|+++++.++ .++..+.++++|++|++++ ..+.++++|++|++++.... ...+..
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 33444444444444444432 2222233445555555554 22344555555555422111 233445
Q ss_pred ccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCC
Q 043839 209 SSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYK 286 (415)
Q Consensus 209 i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~ 286 (415)
++.+++|+.|.+.++. ..++..+..+++|++|++++|. .....+...+..+++|+.|++.. +-.-. -++ ....
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~-~~~~~---~l~~~~~~ 340 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN-VIGDR---GLEVLAQY 340 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG-GGHHH---HHHHHHHH
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC-ccCHH---HHHHHHHh
Confidence 6677778877777765 6677777888999999999883 22233445577899999999975 10000 022 2233
Q ss_pred CCCCceEEEEE------------------------------------ccccCCCCchhhcC-CCCCCeEeecc-------
Q 043839 287 FPPTLTQLSLS------------------------------------NTKLMEDPMPTLEK-LPLLEVLKLKQ------- 322 (415)
Q Consensus 287 lp~~L~~L~l~------------------------------------~~~l~~~~~~~l~~-l~~L~~L~l~~------- 322 (415)
+ ++|++|+++ .+.+++..+..++. +++|+.|++.+
T Consensus 341 ~-~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 341 C-KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp C-TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred C-CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 4 555555555 33333322333332 44444444420
Q ss_pred ------------CCCCCcccEEEeccCCC-cc-ceEEc-CCCccCccEEEEecCcccC-CChhhhcCCCCCCeEEEecCC
Q 043839 323 ------------NSSFPLLKILHLKSMLW-LE-EWTMG-AGSMPKLESLILNPCAYLR-KLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 323 ------------~~~~~~L~~L~l~~~~~-l~-~l~~~-~~~l~~L~~L~l~~c~~~~-~lp~~l~~l~~L~~L~l~~c~ 386 (415)
..++++|++|++++|.+ ++ ..+.. ...+++|+.|++++|...+ .++..+..+++|++|++++|+
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 01244555555544321 11 11111 1247788888888887654 455666789999999999997
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=2.8e-17 Score=155.30 Aligned_cols=209 Identities=18% Similarity=0.141 Sum_probs=135.4
Q ss_pred cCCcccEEEcCCcccccCcccccCc--cCCceEecCc-------ccccccccCcEEEecCCCCCCC-CCCcccCccccce
Q 043839 148 KFKHLRVLNLGSAVLDLYPPGLENL--FHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSP-PNNYSSSLKDLIF 217 (415)
Q Consensus 148 ~~~~L~~L~l~~~~~~~lp~~i~~l--~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~ 217 (415)
.-..++.++++++.+. |..+..+ .+++.|++++ ..+.++++|++|++++|.+... +|..++.+++|++
T Consensus 45 ~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 45 DESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp CSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred CchhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3445889999988776 5556666 7888888887 3455678888888886655433 6666778888888
Q ss_pred eccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCC-CceE
Q 043839 218 ISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPP-TLTQ 293 (415)
Q Consensus 218 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~-~L~~ 293 (415)
|++.+|. ...+..++.+++|++|++++|.......++..+..+++|+.|++++...+-.. -++ .+..+ + +|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~l-~~~L~~ 199 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--HVQVAVAHV-SETITQ 199 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--HHHHHHHHS-CTTCCE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--HHHHHHHhc-ccCCCE
Confidence 8888877 45666777788888888888731122246666778888888888772111000 023 45567 6 8888
Q ss_pred EEEEcc--ccC-CCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCCcc-ceEEcCCCccCccEEEE
Q 043839 294 LSLSNT--KLM-EDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLWLE-EWTMGAGSMPKLESLIL 358 (415)
Q Consensus 294 L~l~~~--~l~-~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l 358 (415)
|++++| .++ ...+..++.+++|+.|++++ ...+++|++|++++|..+. .....++.+++|+.|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 888888 343 23455666777777777765 2344666777776664322 11123556666777777
Q ss_pred ecC
Q 043839 359 NPC 361 (415)
Q Consensus 359 ~~c 361 (415)
++|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 666
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.4e-15 Score=139.14 Aligned_cols=174 Identities=24% Similarity=0.256 Sum_probs=85.2
Q ss_pred CcccEEEcCCcccccCcc-cccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCc-ccCccccceeccccCC-CC
Q 043839 150 KHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS-SC 226 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~ 226 (415)
+++++|+++++.++.+|. .+.++++|++|++++ |.+. .+|.. +..+++|++|++.++. ..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND----------------NKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS----------------SCCS-CCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC----------------CccC-eeChhhhcCCCCCCEEECCCCcCCc
Confidence 456666666666664443 344444444444432 2222 22222 2344444444444444 22
Q ss_pred Cc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEcccc
Q 043839 227 TP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKL 301 (415)
Q Consensus 227 ~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l 301 (415)
++ ..+..+++|++|+++++ ......+..+..+++|+.|++++ + ++ +| .+..+ ++|++|++++|.+
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~-n------~l~~~~~~~~~~l-~~L~~L~L~~n~l 169 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRN--QLKSLPPRVFDSLTKLTYLSLGY-N------ELQSLPKGVFDKL-TSLKELRLYNNQL 169 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCC
T ss_pred CCHhHcccccCCCEEECCCC--ccCeeCHHHhCcCcCCCEEECCC-C------cCCccCHhHccCC-cccceeEecCCcC
Confidence 22 22344444444444444 22222223344445555555544 2 11 33 35566 7777777777776
Q ss_pred CCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccC
Q 043839 302 MEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLR 365 (415)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~ 365 (415)
+...+..+..+++|+ +|++++| .++.++. .+..+++|+.|++++|+...
T Consensus 170 ~~~~~~~~~~l~~L~--------------~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 170 KRVPEGAFDKLTELK--------------TLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCCTTTTTTCTTCC--------------EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cEeChhHhccCCCcC--------------EEECCCC-cCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 554444454444443 4444555 4555554 35667777777777776543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=9.5e-16 Score=143.24 Aligned_cols=220 Identities=17% Similarity=0.105 Sum_probs=114.3
Q ss_pred CCceeEEEeecCCCccccccchHH--HhccCCcccEEEcCCcccc-cCcccc--cCccCCceEecCcccc----------
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCEN--FCKKFKHLRVLNLGSAVLD-LYPPGL--ENLFHLKYLKLITPLL---------- 185 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~i---------- 185 (415)
...++.+.+....... ..... .+..+++|++|++++|.+. ..|..+ ..+++|++|++++..+
T Consensus 63 ~~~l~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPA---QLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBH---HHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCCH---HHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 4456667666655431 11111 1334567999999999988 677666 6777777777776111
Q ss_pred --cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CC---Ccc--ccCCCCCCCeEEEecccCcchhcHHHhh
Q 043839 186 --KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SC---TPD--ILGRLPNVQTLRISGDLSYHHSGVSKSL 257 (415)
Q Consensus 186 --~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~---~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~l 257 (415)
..+++|++|++++|.+....|..++.+++|++|+++++. .. ++. .++.+++|++|++++|.-......+..+
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 235566666666555544444555566666666666554 11 211 1245556666666655210001111111
Q ss_pred hccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccC
Q 043839 258 CELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSM 337 (415)
Q Consensus 258 ~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~ 337 (415)
+..+ ++|++|++++|.+++..|..++.+. .+++|++|++++|
T Consensus 220 --------------------------~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~-----------~~~~L~~L~Ls~N 261 (310)
T 4glp_A 220 --------------------------AAAG-VQPHSLDLSHNSLRATVNPSAPRCM-----------WSSALNSLNLSFA 261 (310)
T ss_dssp --------------------------HHHT-CCCSSEECTTSCCCCCCCSCCSSCC-----------CCTTCCCEECCSS
T ss_pred --------------------------HhcC-CCCCEEECCCCCCCccchhhHHhcc-----------CcCcCCEEECCCC
Confidence 1334 5555556666655444444443331 1234444444555
Q ss_pred CCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 338 LWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 338 ~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.++.+|..+. ++|+.|++++|... .+|. +..+++|+.|++++++
T Consensus 262 -~l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 262 -GLEQVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CCCSCCSCCC--SCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTT
T ss_pred -CCCchhhhhc--CCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCC
Confidence 4445554432 56666666666554 2332 4455666666666544
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=6.9e-16 Score=144.20 Aligned_cols=176 Identities=18% Similarity=0.124 Sum_probs=121.0
Q ss_pred cccCcEEEecCCCCCCCCCCcc--cCccccceeccccCC-C-CCc----cccCCCCCCCeEEEecccCcchhcHHHhhhc
Q 043839 188 MQKLMHLNFGSITMPSPPNNYS--SSLKDLIFISAVHPS-S-CTP----DILGRLPNVQTLRISGDLSYHHSGVSKSLCE 259 (415)
Q Consensus 188 l~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~-~-~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (415)
+++|++|++++|.+....|..+ +.+++|++|++.++. . ..+ ..+..+++|++|++++| ......+..+..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA--HSPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC--SSCCCCTTSCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC--CcchhhHHHhcc
Confidence 4568888888777777788777 888889999988887 2 222 33457888888888888 454555566777
Q ss_pred cCCCcEEEeecCccccccccc-cc-CCCCCCCCceEEEEEccccCCCCch----hhcCCCCCCeEeeccCCCCCcccEEE
Q 043839 260 LHKLECLKLVNEGKMWQFSRM-IL-SEYKFPPTLTQLSLSNTKLMEDPMP----TLEKLPLLEVLKLKQNSSFPLLKILH 333 (415)
Q Consensus 260 l~~L~~L~l~~~~~il~~l~L-lp-~~~~lp~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~L~~L~ 333 (415)
+++|+.|++++ |.+.....+ .+ ++..+ ++|++|++++|.++. .+. .++. +++|++|+
T Consensus 168 l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~~--------------l~~L~~L~ 230 (310)
T 4glp_A 168 FPALTSLDLSD-NPGLGERGLMAALCPHKF-PAIQNLALRNTGMET-PTGVCAALAAA--------------GVQPHSLD 230 (310)
T ss_dssp CTTCCEEECCS-CTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCC-HHHHHHHHHHH--------------TCCCSSEE
T ss_pred CCCCCEEECCC-CCCccchhhhHHHhhhcC-CCCCEEECCCCCCCc-hHHHHHHHHhc--------------CCCCCEEE
Confidence 78888888877 421000000 12 34667 788888888887642 222 1233 35566666
Q ss_pred eccCCCccc-eEEcCCCc---cCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 334 LKSMLWLEE-WTMGAGSM---PKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 334 l~~~~~l~~-l~~~~~~l---~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
+++|. ++. .|..++.+ ++|++|++++|... .+|..+. ++|+.|++++|.
T Consensus 231 Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 231 LSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp CTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCC
T ss_pred CCCCC-CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCc
Confidence 68884 454 46666666 79999999999877 7887774 899999999986
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=2.2e-15 Score=135.29 Aligned_cols=174 Identities=14% Similarity=0.077 Sum_probs=105.2
Q ss_pred ccccccCcEEEecCCCCCCCCCC-cccCccccceecccc-CC-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhcc
Q 043839 185 LKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVH-PS-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCEL 260 (415)
Q Consensus 185 i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~-~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 260 (415)
++++++|++|++++|.....++. .++.+++|++|++.+ +. ..++ ..+..+++|++|++++|. ...+|. +..+
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~---l~~lp~-~~~l 126 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG---LKMFPD-LTKV 126 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC---CCSCCC-CTTC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC---Cccccc-cccc
Confidence 44555666666664542334443 567777777777776 55 4443 346677777777777762 222333 4444
Q ss_pred CCCc---EEEeecCc-cccccccccc--CCCCCCCCce-EEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEE
Q 043839 261 HKLE---CLKLVNEG-KMWQFSRMIL--SEYKFPPTLT-QLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILH 333 (415)
Q Consensus 261 ~~L~---~L~l~~~~-~il~~l~Llp--~~~~lp~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~ 333 (415)
++|+ .|++++ + .+-. +| .+..+ ++|+ .|++++|.++ .++... ...++|++|+
T Consensus 127 ~~L~~L~~L~l~~-N~~l~~----i~~~~~~~l-~~L~~~L~l~~n~l~-~i~~~~--------------~~~~~L~~L~ 185 (239)
T 2xwt_C 127 YSTDIFFILEITD-NPYMTS----IPVNAFQGL-CNETLTLKLYNNGFT-SVQGYA--------------FNGTKLDAVY 185 (239)
T ss_dssp CBCCSEEEEEEES-CTTCCE----ECTTTTTTT-BSSEEEEECCSCCCC-EECTTT--------------TTTCEEEEEE
T ss_pred cccccccEEECCC-Ccchhh----cCcccccch-hcceeEEEcCCCCCc-ccCHhh--------------cCCCCCCEEE
Confidence 4444 555554 2 1100 22 34445 5555 5555555443 111111 1125788888
Q ss_pred eccCCCccceEE-cCCCc-cCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 334 LKSMLWLEEWTM-GAGSM-PKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 334 l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
+++|..++.++. .+..+ ++|+.|++++|+.. .+|.. .+++|+.|++.++.
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 899866888864 47888 99999999999776 57754 68899999998875
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=2.1e-15 Score=135.42 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=126.8
Q ss_pred cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cccCcccccCccCCceEecCcccccccccCcEE
Q 043839 116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LDLYPPGLENLFHLKYLKLITPLLKLMQKLMHL 194 (415)
Q Consensus 116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L 194 (415)
++. ..++++.|.+.++.. ..+.+..|..+++|++|++++|. ++.++. ..++++++|++|
T Consensus 26 ip~-~~~~l~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~---------------~~f~~l~~L~~L 85 (239)
T 2xwt_C 26 IPS-LPPSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSIDVTLQQLES---------------HSFYNLSKVTHI 85 (239)
T ss_dssp CCC-CCTTCCEEEEESCCC----SEECTTTTTTCTTCCEEEEECCSSCCEECT---------------TTEESCTTCCEE
T ss_pred cCC-CCCcccEEEEeCCcc----eEECHHHccCCCCCcEEeCCCCCCcceeCH---------------hHcCCCcCCcEE
Confidence 444 444677777777666 44444566777777777777775 665443 133445566666
Q ss_pred EecC-CCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCC---eEEEecccCcchhcHH-HhhhccCCCc-EEE
Q 043839 195 NFGS-ITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQ---TLRISGDLSYHHSGVS-KSLCELHKLE-CLK 267 (415)
Q Consensus 195 ~l~~-~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~-~~l~~l~~L~-~L~ 267 (415)
++++ |.+....+..+..+++|++|++.++. ..+|. ++.+++|+ .|++++|. ....++ ..+..+++|+ .|+
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEE
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCc--chhhcCcccccchhcceeEEE
Confidence 6664 33333333456777888888888777 55665 77777777 88888761 223333 3467778888 888
Q ss_pred eecCccccccccc--cc-CCCCCCCCceEEEEEccc-cCCCCchhhcCC-CCCCeEeeccCCCCCcccEEEeccCCCccc
Q 043839 268 LVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTK-LMEDPMPTLEKL-PLLEVLKLKQNSSFPLLKILHLKSMLWLEE 342 (415)
Q Consensus 268 l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~-l~~~~~~~l~~l-~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~ 342 (415)
+++ + ++ +| ..... ++|++|++++|. ++...+..++.+ ++ |++|++++| .++.
T Consensus 163 l~~-n------~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~--------------L~~L~l~~N-~l~~ 219 (239)
T 2xwt_C 163 LYN-N------GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG--------------PSLLDVSQT-SVTA 219 (239)
T ss_dssp CCS-C------CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBC--------------CSEEECTTC-CCCC
T ss_pred cCC-C------CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccC--------------CcEEECCCC-cccc
Confidence 877 4 22 56 44455 789999999995 765445555555 54 455555666 5666
Q ss_pred eEEcCCCccCccEEEEecCcc
Q 043839 343 WTMGAGSMPKLESLILNPCAY 363 (415)
Q Consensus 343 l~~~~~~l~~L~~L~l~~c~~ 363 (415)
+|.. .+++|+.|+++++..
T Consensus 220 l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 220 LPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCT--TCTTCSEEECTTC--
T ss_pred CChh--HhccCceeeccCccC
Confidence 6654 788888888887753
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.3e-15 Score=142.07 Aligned_cols=206 Identities=17% Similarity=0.088 Sum_probs=112.1
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCC-cccCccccceeccc-cCC-CC
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAV-HPS-SC 226 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~-~~~-~~ 226 (415)
+++++|+|++|.++.+|.. .++++++|++|++++|.+...+|. .+.++++++++... .+. ..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~---------------~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG---------------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp TTCSEEEEESCCCSEECTT---------------SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCEEEccCCcCCCcCHH---------------HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 4556666666666655532 234455555555554544444443 24555555543332 233 33
Q ss_pred C-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEcccc
Q 043839 227 T-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKL 301 (415)
Q Consensus 227 ~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l 301 (415)
+ +..++.+++|+.|++++|. .....+.......++..+++...+ ++ +| .+..++..++.|++++|.+
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~l~~l~l~~~~------~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQDNI------NIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEEC--CSSCCCCTTCCBSSCEEEEEESCT------TCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCchhhhhccccccccccccc--cccCCchhhcccchhhhhhhcccc------ccccccccchhhcchhhhhhccccccc
Confidence 3 3445666666666666652 222222222333445555554311 11 23 3333324566666666665
Q ss_pred CCCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhh
Q 043839 302 MEDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEE 370 (415)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~ 370 (415)
+ .++......++|+.+.+.+ ...+++|++|++++| .++.+|. +.+.+|+.|.+.++..++.+| .
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~ 241 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLP-T 241 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCC-C
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCC-C
Confidence 4 3333333445666666653 234567777777877 6777764 357777777777777777777 4
Q ss_pred hcCCCCCCeEEEe
Q 043839 371 LWCIKNLCKLELH 383 (415)
Q Consensus 371 l~~l~~L~~L~l~ 383 (415)
+..+++|+.+++.
T Consensus 242 l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 LEKLVALMEASLT 254 (350)
T ss_dssp TTTCCSCCEEECS
T ss_pred chhCcChhhCcCC
Confidence 7778888888875
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=1.6e-16 Score=161.62 Aligned_cols=282 Identities=13% Similarity=0.057 Sum_probs=164.4
Q ss_pred CceeEEEEEeCCCCCc-cCCCC---CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCc----cccc
Q 043839 100 ANVKRCFILKDLTEFF-PLEHS---DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYP----PGLE 170 (415)
Q Consensus 100 ~~~r~l~l~~~~~~~~-~~~~~---~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp----~~i~ 170 (415)
..++++.+. .+.... ..... +++|++|.+.++.... ...++..+.++++|++|++++|.++ ..+ ....
T Consensus 105 ~~L~~L~L~-~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLK-RMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEE-SCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEee-CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 456777777 543321 11111 6788888887764321 2234455667888888888887755 222 2223
Q ss_pred CccCCceEecCcc-----------cccccccCcEEEecCCCCCC------------------------------------
Q 043839 171 NLFHLKYLKLITP-----------LLKLMQKLMHLNFGSITMPS------------------------------------ 203 (415)
Q Consensus 171 ~l~~L~~L~l~~~-----------~i~~l~~L~~L~l~~~~~~~------------------------------------ 203 (415)
.+++|++|++++. .+.++++|++|++++|....
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 5567777777651 12335677777776441100
Q ss_pred ------------------CCCCcccCccccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839 204 ------------------PPNNYSSSLKDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK 262 (415)
Q Consensus 204 ------------------~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 262 (415)
.+|..+..+++|++|++.+|. ..+...+..+++|++|++.++ .....++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCC
Confidence 112222246777777777776 223333567888888888877 233334444445788
Q ss_pred CcEEEeec--------Cccc--------------cccc-----cc----ccCC-CCCCCCceEEEEE--c----cccCCC
Q 043839 263 LECLKLVN--------EGKM--------------WQFS-----RM----ILSE-YKFPPTLTQLSLS--N----TKLMED 304 (415)
Q Consensus 263 L~~L~l~~--------~~~i--------------l~~l-----~L----lp~~-~~lp~~L~~L~l~--~----~~l~~~ 304 (415)
|+.|++.. .+.+ |+.| ++ +..+ ..+ ++|++|+++ + +.++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCC
Confidence 88887722 1111 1111 01 1111 246 788888888 2 233321
Q ss_pred -----CchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEc-CCCccCccEEEEecCcccCCCh
Q 043839 305 -----PMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMG-AGSMPKLESLILNPCAYLRKLP 368 (415)
Q Consensus 305 -----~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~~~~lp 368 (415)
.+..+..+++|+.|++++ ...+++|++|++++|......+.. ..++++|+.|++++|+.....+
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred chhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 122356778888888876 113788999999988532222222 2568999999999999743222
Q ss_pred -hhhcCCCCCCeEEEecCCh
Q 043839 369 -EELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 369 -~~l~~l~~L~~L~l~~c~~ 387 (415)
..+..+++|+.|++++|+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhCCCCCEEeeeCCCC
Confidence 3455689999999999985
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=2.7e-16 Score=150.24 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=103.6
Q ss_pred hHHHhccCCcccEEEcCCcccccCc-----ccccCcc-CCceEecCc--------cccccc-----ccCcEEEecCCCCC
Q 043839 142 CENFCKKFKHLRVLNLGSAVLDLYP-----PGLENLF-HLKYLKLIT--------PLLKLM-----QKLMHLNFGSITMP 202 (415)
Q Consensus 142 ~~~~~~~~~~L~~L~l~~~~~~~lp-----~~i~~l~-~L~~L~l~~--------~~i~~l-----~~L~~L~l~~~~~~ 202 (415)
.+.++...++|++|++++|.++..+ ..+..++ +|++|++++ ..+..+ ++|++|++++|.+.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 3444555555666666666665333 3444555 566666655 112222 55666666645444
Q ss_pred CCCCCcccC----c-cccceeccccCC--CCCcc----ccCC-CCCCCeEEEecccCcch----hcHHHhhhccC-CCcE
Q 043839 203 SPPNNYSSS----L-KDLIFISAVHPS--SCTPD----ILGR-LPNVQTLRISGDLSYHH----SGVSKSLCELH-KLEC 265 (415)
Q Consensus 203 ~~~p~~i~~----l-~~L~~L~l~~~~--~~~~~----~l~~-l~~L~~L~l~~~~~~~~----~~~~~~l~~l~-~L~~ 265 (415)
...+..+.. + ++|++|++++|. ...+. .+.. .++|++|++++|. .. ..++..+..++ +|+.
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHHHHHhcCCccccE
Confidence 343333222 2 566666666665 11111 1233 2466666666652 22 23444444443 5666
Q ss_pred EEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCC----chhhcC-CCCCCeEeecc--------------C
Q 043839 266 LKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDP----MPTLEK-LPLLEVLKLKQ--------------N 323 (415)
Q Consensus 266 L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~----~~~l~~-l~~L~~L~l~~--------------~ 323 (415)
|++++ +.+-.. .. +. .+..+|++|++|++++|.++... +..+.. .++|+.|++++ .
T Consensus 172 L~Ls~-n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 172 LNLRG-NNLASK-NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp EECTT-SCGGGS-CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred eeecC-CCCchh-hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 66655 311000 00 11 12233235666666666554322 222322 23555555544 1
Q ss_pred CCCCcccEEEeccCC-------CccceEEcCCCccCccEEEEecCccc
Q 043839 324 SSFPLLKILHLKSML-------WLEEWTMGAGSMPKLESLILNPCAYL 364 (415)
Q Consensus 324 ~~~~~L~~L~l~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~~~ 364 (415)
..+++|++|++++|. .+..++..+..+++|+.|++++|+..
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 344566666666663 01223334556666777777776644
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=1e-14 Score=131.90 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=103.8
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CC-C
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SC-T 227 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~ 227 (415)
...++++++++.++.+|..+. ++++.|++++|.+....+..++.+++|++|++.++. .. .
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~------------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP------------------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCeEEecCCCCccccCCCCC------------------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 567888888888888886543 355666666566666666678888888888888887 33 3
Q ss_pred ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCC
Q 043839 228 PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 228 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~ 303 (415)
+..+..+++|++|++++| ......+..+..+++|+.|++++ + ++ +| .+..+ ++|++|++++|.+++
T Consensus 76 ~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~-N------~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANN--QLASLPLGVFDHLTQLDKLYLGG-N------QLKSLPSGVFDRL-TKLKELRLNTNQLQS 145 (251)
T ss_dssp TTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCCCC
T ss_pred HhHhccCCcCCEEECCCC--cccccChhHhcccCCCCEEEcCC-C------cCCCcChhHhccC-CcccEEECcCCcCCc
Confidence 445778888888888887 33333333445556666666655 3 22 33 34455 555566655555543
Q ss_pred CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccC
Q 043839 304 DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLR 365 (415)
Q Consensus 304 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~ 365 (415)
..+..++.++ +|++|++++| .++.++. .+..+++|+.|++++|+...
T Consensus 146 ~~~~~~~~l~--------------~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 146 IPAGAFDKLT--------------NLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCT--------------TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHcCcCc--------------CCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 3333333333 3333333454 3444432 35566666666666666544
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=1.3e-14 Score=131.26 Aligned_cols=167 Identities=20% Similarity=0.195 Sum_probs=94.5
Q ss_pred CceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCcccccccccCcEEEecCCC
Q 043839 122 MYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLITPLLKLMQKLMHLNFGSIT 200 (415)
Q Consensus 122 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~ 200 (415)
+..+.+.+.+.... .++ ..+ .+++++|++++|.++.++ ..+.++++|++|++++ |.
T Consensus 14 ~~~~~l~~~~~~l~----~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----------------n~ 70 (251)
T 3m19_A 14 EGKKEVDCQGKSLD----SVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY----------------NQ 70 (251)
T ss_dssp GGGTEEECTTCCCS----SCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT----------------SC
T ss_pred CCCeEEecCCCCcc----ccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCC----------------Cc
Confidence 34566666666552 222 222 268999999999998554 3466666666666554 44
Q ss_pred CCCCCCCcccCccccceeccccCC-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccc
Q 043839 201 MPSPPNNYSSSLKDLIFISAVHPS-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFS 278 (415)
Q Consensus 201 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l 278 (415)
+....|..+..+++|++|++.++. ..++ ..++.+++|++|++++| ......+..+..+++|+.|++++ +
T Consensus 71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N------ 141 (251)
T 3m19_A 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN--QLKSLPSGVFDRLTKLKELRLNT-N------ 141 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------
T ss_pred CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC--cCCCcChhHhccCCcccEEECcC-C------
Confidence 444344445555566666665555 3332 33455566666666655 22222222345556666666655 3
Q ss_pred cc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeec
Q 043839 279 RM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK 321 (415)
Q Consensus 279 ~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 321 (415)
++ +| .+..+ ++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 142 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 142 QLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 22 33 46666 777777777777765555556666655555554
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=8.3e-17 Score=153.83 Aligned_cols=228 Identities=12% Similarity=0.049 Sum_probs=163.8
Q ss_pred EEEcCCcccc-cCcccccCccCCceEecCc------------ccccccc-cCcEEEecCCCCCCCCCCcccCc-----cc
Q 043839 154 VLNLGSAVLD-LYPPGLENLFHLKYLKLIT------------PLLKLMQ-KLMHLNFGSITMPSPPNNYSSSL-----KD 214 (415)
Q Consensus 154 ~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~------------~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~l-----~~ 214 (415)
+++++.+.++ .+|..+....+|++|++++ ..+.+++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678888888 5666566666799999999 2345676 89999999887776667666665 99
Q ss_pred cceeccccCC--CCCccc----cCCC-CCCCeEEEecccCcchhcHHH----hhhc-cCCCcEEEeecCccccccccc--
Q 043839 215 LIFISAVHPS--SCTPDI----LGRL-PNVQTLRISGDLSYHHSGVSK----SLCE-LHKLECLKLVNEGKMWQFSRM-- 280 (415)
Q Consensus 215 L~~L~l~~~~--~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~----~l~~-l~~L~~L~l~~~~~il~~l~L-- 280 (415)
|++|++++|. ...+.. +..+ ++|++|++++|. ..+..+. .+.. .++|+.|++++ +.+-.. ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~-~~~~ 157 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIK-SSDE 157 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGS-CHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHH-HHHH
Confidence 9999999998 333433 4455 899999999994 4433333 3444 36999999998 422000 00
Q ss_pred cc-CCCCCCCCceEEEEEccccCCCCchhh----cCC-CCCCeEeecc--CC-------------CCCcccEEEeccCCC
Q 043839 281 IL-SEYKFPPTLTQLSLSNTKLMEDPMPTL----EKL-PLLEVLKLKQ--NS-------------SFPLLKILHLKSMLW 339 (415)
Q Consensus 281 lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l----~~l-~~L~~L~l~~--~~-------------~~~~L~~L~l~~~~~ 339 (415)
++ .+..+|++|++|++++|.+++..+..+ ..+ ++|+.|++++ .+ ..++|++|++++| .
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~ 236 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-C 236 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-C
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-C
Confidence 34 445563599999999999877666544 445 5999999998 11 1358999999999 4
Q ss_pred ccceE-----EcCCCccCccEEEEecCcccC-------CChhhhcCCCCCCeEEEecCC
Q 043839 340 LEEWT-----MGAGSMPKLESLILNPCAYLR-------KLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 340 l~~l~-----~~~~~l~~L~~L~l~~c~~~~-------~lp~~l~~l~~L~~L~l~~c~ 386 (415)
++..+ ..+..+++|+.|++++|.... .++..+..+++|+.|++++++
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 55432 345788999999999998332 234456778889999999876
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=3.9e-16 Score=158.78 Aligned_cols=120 Identities=20% Similarity=0.176 Sum_probs=68.8
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCc-ccc--cCcccccCccCCceEecCccc--------c----
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSA-VLD--LYPPGLENLFHLKYLKLITPL--------L---- 185 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~--~lp~~i~~l~~L~~L~l~~~~--------i---- 185 (415)
+++|++|.+.++... ...+......+++|++|++++| .++ .++..+.++++|++|++++.. +
T Consensus 104 ~~~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVT---DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp CTTCCEEEEESCBCC---HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCCeEEeeCcEEc---HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 567777777776542 1222222335777777777777 344 244444467777777777511 1
Q ss_pred cccccCcEEEecCCCCCCCCC-----CcccCccccceeccccCC--CCCccccCCCCCCCeEEEecc
Q 043839 186 KLMQKLMHLNFGSITMPSPPN-----NYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGD 245 (415)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~p-----~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 245 (415)
..+++|++|+++++. ..+. ..+..+++|++|++.+|. ..++..+..+++|+.|++..+
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 245577777777443 1121 112345777777777764 345556666777777765443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=2.3e-14 Score=125.71 Aligned_cols=169 Identities=19% Similarity=0.197 Sum_probs=86.3
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-c
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-I 230 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~ 230 (415)
+.++.+++.++.+|..+. .+| ++|++++|.+....+..++.+++|++|++.++. ..++. .
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l----------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQT----------------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTC----------------SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred CEEEecCCCccCCCCCCC--CCC----------------cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence 455666666666664432 233 333444343332223334555566666655555 33333 2
Q ss_pred cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCc
Q 043839 231 LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPM 306 (415)
Q Consensus 231 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~ 306 (415)
+..+++|++|++++| ......+..+..+++|+.|++++ + ++ +| .+..+ ++|++|++++|.+++..+
T Consensus 72 ~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~-N------~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTN--QLQSLPNGVFDKLTQLKELALNT-N------QLQSLPDGVFDKL-TQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred cCCCCCcCEEECCCC--cCCccCHhHhcCccCCCEEEcCC-C------cCcccCHhHhccC-CcCCEEECCCCccceeCH
Confidence 455666666666655 22222223345555666666655 3 22 34 45677 888888888888765555
Q ss_pred hhhcCCCCCCeEeecc---CCCCCcccEEEeccCCCccceEEcCCC
Q 043839 307 PTLEKLPLLEVLKLKQ---NSSFPLLKILHLKSMLWLEEWTMGAGS 349 (415)
Q Consensus 307 ~~l~~l~~L~~L~l~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~ 349 (415)
..++.+++|+.|++++ .+.+++|++|+++.|...+.+|..++.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred HHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeeccCcc
Confidence 5566666666666643 223333444444443333334433333
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=9e-15 Score=127.23 Aligned_cols=145 Identities=20% Similarity=0.245 Sum_probs=77.5
Q ss_pred ccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--
Q 043839 147 KKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-- 224 (415)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-- 224 (415)
..+++|++|+++++.++.+| .+..+++|++|++++ | ... .+..++.+++|++|++.++.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~----------------n-~~~-~~~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINN----------------I-HAT-NYNPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEES----------------C-CCS-CCGGGTTCTTCCEEEEECTTCB
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccC----------------C-CCC-cchhhhcCCCCCEEEeECCccC
Confidence 55677888888888877666 455555555555543 2 111 12234555555555555554
Q ss_pred CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc-cccccccccCCCCCCCCceEEEEEccccCC
Q 043839 225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK-MWQFSRMILSEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-il~~l~Llp~~~~lp~~L~~L~l~~~~l~~ 303 (415)
...+..++.+++|+.|++++| ...+..+..+..+++|+.|++++ +. +-. +|.+..+ ++|+.|++++|.+++
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~-n~~i~~----~~~l~~l-~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSY-NGAITD----IMPLKTL-PELKSLNIQFDGVHD 173 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCS-CTBCCC----CGGGGGC-SSCCEEECTTBCCCC
T ss_pred cccChhhcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccC-CCCccc----cHhhcCC-CCCCEEECCCCCCcC
Confidence 223444555555555555555 34444455555555555555555 31 000 3344555 666666666666543
Q ss_pred CCchhhcCCCCCCeEee
Q 043839 304 DPMPTLEKLPLLEVLKL 320 (415)
Q Consensus 304 ~~~~~l~~l~~L~~L~l 320 (415)
.+ .+..+++|+.|++
T Consensus 174 -~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 174 -YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp -CT-TGGGCSSCCEEEE
T ss_pred -hH-HhccCCCCCEEEe
Confidence 22 4445555555444
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=3.9e-14 Score=131.03 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=95.0
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEE
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHL 194 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L 194 (415)
+++++.|.+.++... .+ ..+..+++|++|++++|.++.++. ++++++|++|++++ +.++++++|++|
T Consensus 45 l~~L~~L~l~~~~i~----~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK----SV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCC----CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcc----cC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 566777777666552 22 236667777777777777776665 66677777777766 445566666666
Q ss_pred EecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc
Q 043839 195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK 273 (415)
Q Consensus 195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (415)
++++|.+.. + ..++.+++|++|++.++. ..+ ..++.+++|+.|++++|. ..+ ++. +..+++|+.|++++ |
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~--l~~-~~~-l~~l~~L~~L~L~~-N- 188 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--ISD-IVP-LAGLTKLQNLYLSK-N- 188 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCCEEECCS-S-
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc--ccc-chh-hcCCCccCEEECCC-C-
Confidence 666444332 3 346666666666666666 333 456666666666666662 222 222 55566666666665 3
Q ss_pred ccccccc--ccCCCCCCCCceEEEEEccccCC
Q 043839 274 MWQFSRM--ILSEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 274 il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~ 303 (415)
++ +|.+..+ ++|+.|++++|.+..
T Consensus 189 -----~i~~l~~l~~l-~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 -----HISDLRALAGL-KNLDVLELFSQECLN 214 (291)
T ss_dssp -----CCCBCGGGTTC-TTCSEEEEEEEEEEC
T ss_pred -----cCCCChhhccC-CCCCEEECcCCcccC
Confidence 12 3344555 666666666665543
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=5.7e-14 Score=142.56 Aligned_cols=167 Identities=21% Similarity=0.203 Sum_probs=104.3
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEE
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHL 194 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L 194 (415)
+++|+.|.+.++.... + ..+..+++|++|+|++|.+..+|. ++.+++|++|+|++ +.+..+++|++|
T Consensus 42 L~~L~~L~l~~n~i~~----l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCC----C--TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCCC----C--hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence 5566666666665522 2 236677777777777777776655 66777777777766 455666777777
Q ss_pred EecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc
Q 043839 195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK 273 (415)
Q Consensus 195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (415)
++++|.+. .+ +.+..+++|+.|++++|. ..+ ..++.+++|+.|++++| ...+..| +..+++|+.|+++. |
T Consensus 115 ~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N--~l~~~~~--l~~l~~L~~L~Ls~-N- 185 (605)
T 1m9s_A 115 SLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN--QISDIVP--LAGLTKLQNLYLSK-N- 185 (605)
T ss_dssp ECTTSCCC-CC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS--CCCCCGG--GTTCTTCCEEECCS-S-
T ss_pred EecCCCCC-CC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC--cCCCchh--hccCCCCCEEECcC-C-
Confidence 77744433 23 346677777777777776 433 55667777777777776 2333222 66677777777766 3
Q ss_pred ccccccc--ccCCCCCCCCceEEEEEccccCCCCchhh
Q 043839 274 MWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTL 309 (415)
Q Consensus 274 il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l 309 (415)
++ +|.+..+ ++|+.|++++|.+.......+
T Consensus 186 -----~i~~l~~l~~l-~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 186 -----HISDLRALAGL-KNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp -----CCCBCGGGTTC-TTCSEEECCSEEEECCCCCCC
T ss_pred -----CCCCChHHccC-CCCCEEEccCCcCcCCccccc
Confidence 22 4455666 777777777777655443333
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=4.9e-14 Score=130.35 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=90.8
Q ss_pred ccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCC
Q 043839 185 LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKL 263 (415)
Q Consensus 185 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 263 (415)
++.+++|++|++++|.+. .++. ++.+++|++|++.++. ..+ +.++.+++|++|++++|. ..+ + ..+..+++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~--i~~-~-~~l~~l~~L 136 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG--ISD-I-NGLVHLPQL 136 (291)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEECTTSC--CCC-C-GGGGGCTTC
T ss_pred HhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCCCC-hhhccCCCCCEEECCCCc--CCC-C-hhhcCCCCC
Confidence 344555566666644443 3443 7777888888887777 443 347777888888887772 222 2 356677777
Q ss_pred cEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCcc
Q 043839 264 ECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLE 341 (415)
Q Consensus 264 ~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~ 341 (415)
+.|++++ + ++ ++.+..+ ++|+.|++++|.+.+..+ ++.+ ++|++|++++| .++
T Consensus 137 ~~L~l~~-n------~l~~~~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l--------------~~L~~L~L~~N-~i~ 191 (291)
T 1h6t_A 137 ESLYLGN-N------KITDITVLSRL-TKLDTLSLEDNQISDIVP--LAGL--------------TKLQNLYLSKN-HIS 191 (291)
T ss_dssp CEEECCS-S------CCCCCGGGGGC-TTCSEEECCSSCCCCCGG--GTTC--------------TTCCEEECCSS-CCC
T ss_pred CEEEccC-C------cCCcchhhccC-CCCCEEEccCCccccchh--hcCC--------------CccCEEECCCC-cCC
Confidence 7777776 3 22 3345566 777777777776643322 4444 44555555666 455
Q ss_pred ceEEcCCCccCccEEEEecCcccC
Q 043839 342 EWTMGAGSMPKLESLILNPCAYLR 365 (415)
Q Consensus 342 ~l~~~~~~l~~L~~L~l~~c~~~~ 365 (415)
.++ .+..+++|+.|++++|+...
T Consensus 192 ~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCh-hhccCCCCCEEECcCCcccC
Confidence 554 36777888888888877654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=6.6e-14 Score=133.02 Aligned_cols=222 Identities=14% Similarity=0.075 Sum_probs=130.7
Q ss_pred CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcc-cccCccCCceEecCcccccc
Q 043839 110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPP-GLENLFHLKYLKLITPLLKL 187 (415)
Q Consensus 110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~-~i~~l~~L~~L~l~~~~i~~ 187 (415)
+.....+|..+.++++.|.+.++.. ..+.+..|.++++|++|+|++|.+. .+|. .+.++++++.+..
T Consensus 18 ~~~Lt~iP~~l~~~l~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~------- 86 (350)
T 4ay9_X 18 ESKVTEIPSDLPRNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI------- 86 (350)
T ss_dssp STTCCSCCTTCCTTCSEEEEESCCC----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE-------
T ss_pred CCCCCccCcCcCCCCCEEEccCCcC----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc-------
Confidence 4455556666677899999999988 5666678999999999999999975 5554 3455555544322
Q ss_pred cccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHH-hhhcc-CCC
Q 043839 188 MQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSK-SLCEL-HKL 263 (415)
Q Consensus 188 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l-~~L 263 (415)
+.+|.+....|..++.+++|++|++.++. ..++. .+....++..|++.++ .....++. .+..+ ..+
T Consensus 87 --------~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~--~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 87 --------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN--INIHTIERNSFVGLSFES 156 (350)
T ss_dssp --------EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC--TTCCEECTTSSTTSBSSC
T ss_pred --------ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc--cccccccccchhhcchhh
Confidence 22122222223345555555555555555 33322 2233344445555443 12222221 22232 345
Q ss_pred cEEEeecCccccccccc--cc-CCCCCCCCceEEEEEcc-ccCCCCchhhcCCCCCCeEeecc-------CCCCCcccEE
Q 043839 264 ECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNT-KLMEDPMPTLEKLPLLEVLKLKQ-------NSSFPLLKIL 332 (415)
Q Consensus 264 ~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-------~~~~~~L~~L 332 (415)
+.|++++ | ++ +| ..... .+|++|.+.++ .++......++.+++|++|++++ ...|.+|+.|
T Consensus 157 ~~L~L~~-N------~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L 228 (350)
T 4ay9_X 157 VILWLNK-N------GIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228 (350)
T ss_dssp EEEECCS-S------CCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred hhhcccc-c------cccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHh
Confidence 5555555 3 22 44 33344 55666666543 33222233456666666666665 3457788888
Q ss_pred EeccCCCccceEEcCCCccCccEEEEecC
Q 043839 333 HLKSMLWLEEWTMGAGSMPKLESLILNPC 361 (415)
Q Consensus 333 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 361 (415)
.+.++.+++.+| .+..+++|+.+++.++
T Consensus 229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 229 RARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 888888888888 4788999999998753
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=5.9e-14 Score=123.05 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=108.2
Q ss_pred cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEE
Q 043839 116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLN 195 (415)
Q Consensus 116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~ 195 (415)
++....++++.|.+.++.. ..+.+..+..+++|++|++++|.++.+|.. .+..+++|++|+
T Consensus 22 ~p~~~~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~~L~~L~ 82 (208)
T 2o6s_A 22 VPTGIPAQTTYLDLETNSL----KSLPNGVFDELTSLTQLYLGGNKLQSLPNG---------------VFNKLTSLTYLN 82 (208)
T ss_dssp CCSCCCTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEE
T ss_pred CCCCCCCCCcEEEcCCCcc----CcCChhhhcccccCcEEECCCCccCccChh---------------hcCCCCCcCEEE
Confidence 3433355677777766665 334444566677777777777766655432 234455566666
Q ss_pred ecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc
Q 043839 196 FGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK 273 (415)
Q Consensus 196 l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (415)
+++|.+....+..++.+++|++|++.++. ..++. .+..+++|++|++++| ...+..+..+..+++|+.|++++ |
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~-N- 158 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN--QLKSVPDGVFDRLTSLQYIWLHD-N- 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCS-C-
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC--ccceeCHHHhccCCCccEEEecC-C-
Confidence 66455544334446778888888888877 44444 3677888888888887 34333334467788888888877 3
Q ss_pred cccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCC
Q 043839 274 MWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPL 314 (415)
Q Consensus 274 il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~ 314 (415)
|+...+ ++|+.|+++.|.+++.+|..++.++.
T Consensus 159 --------~~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 --------PWDCTC-PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------CBCCCT-TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------CeecCC-CCHHHHHHHHHhCCceeeccCccccC
Confidence 444566 78888888888888888877776543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=6.4e-14 Score=140.77 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=124.6
Q ss_pred CcccEEEcCCcccccCcccccCccCCceEecCcccc----cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLL----KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS- 224 (415)
Q Consensus 150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i----~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~- 224 (415)
.+|++|+++++.++.+|..+. ++|++|++++..+ ..+++|++|++++|.+.. +|. ++. +|++|++++|.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC
Confidence 389999999999888887664 6788888877222 345677777777555443 666 554 78888887777
Q ss_pred CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccC
Q 043839 225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLM 302 (415)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~ 302 (415)
..+|. .+++|+.|++++|. . ..+|. .+++|+.|++++ | ++ +|. ++++|+.|++++|.++
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N~--l-~~lp~---~l~~L~~L~Ls~-N------~L~~lp~---l~~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNNQ--L-TMLPE---LPTSLEVLSVRN-N------QLTFLPE---LPESLEALDVSTNLLE 193 (571)
T ss_dssp SCCCC---CCTTCCEEECCSSC--C-SCCCC---CCTTCCEEECCS-S------CCSCCCC---CCTTCCEEECCSSCCS
T ss_pred CCCCC---cCccccEEeCCCCc--c-CcCCC---cCCCcCEEECCC-C------CCCCcch---hhCCCCEEECcCCCCC
Confidence 55665 56778888887772 2 22443 456777777766 4 22 332 2256777777777664
Q ss_pred CCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839 303 EDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCI 374 (415)
Q Consensus 303 ~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l 374 (415)
.+|. +.. +| ....+.|+.|++++| .++.+|..+..+++|+.|++++|+..+.+|..+..+
T Consensus 194 -~lp~-~~~--~L-------~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 -SLPA-VPV--RN-------HHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -SCCC-CC-----------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -chhh-HHH--hh-------hcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3333 221 11 112334588889988 778899888889999999999999888777766554
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.7e-13 Score=119.12 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=99.1
Q ss_pred cccccCcEEEecCCCCCCCCCCcccCccccceeccccCCCCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839 186 KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC 265 (415)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 265 (415)
+++++|++|++++|.+ ..+| ++..+++|++|++.++....+..+..+++|++|++++| ......+.
T Consensus 41 ~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~---------- 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINV-TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK--DVTSDKIP---------- 106 (197)
T ss_dssp HHHHTCCEEEEESSCC-SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT--TCBGGGSC----------
T ss_pred hhcCCccEEeccCCCc-cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC--ccCcccCh----------
Confidence 4566777777774443 3555 57777777877777776333446677777777777776 23222222
Q ss_pred EEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE
Q 043839 266 LKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM 345 (415)
Q Consensus 266 L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~ 345 (415)
.+..+ ++|++|++++|.+++..+..++.+++|+.| ++++|..++.++
T Consensus 107 -----------------~l~~l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L--------------~L~~n~~i~~~~- 153 (197)
T 4ezg_A 107 -----------------NLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSI--------------DLSYNGAITDIM- 153 (197)
T ss_dssp -----------------CCTTC-TTCCEEECCSSBCBGGGHHHHTTCSSCCEE--------------ECCSCTBCCCCG-
T ss_pred -----------------hhcCC-CCCCEEEecCCccCcHhHHHHhhCCCCCEE--------------EccCCCCccccH-
Confidence 55566 777777777777766566666655544444 445664466665
Q ss_pred cCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 346 GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 346 ~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.++.+++|+.|++++|... .++ .+..+++|+.|++++++
T Consensus 154 ~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 154 PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC-
T ss_pred hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcc
Confidence 5777888888888888765 355 67778888888888765
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=8.7e-14 Score=141.19 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=114.7
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-C
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-S 225 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~ 225 (415)
..+.+..+.+..++. +..+.+|+.|++++ +.+..+++|+.|++++|.+. .++. +..+++|+.|++.+|. .
T Consensus 24 ~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCC
T ss_pred HHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCC
Confidence 334444444443222 34555666666655 45666778888888855544 4444 8889999999999988 4
Q ss_pred CCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCC
Q 043839 226 CTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 226 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~ 303 (415)
.++ .+..+++|+.|++++|. .. .+ ..+..+++|+.|+++. + ++ ++.+..+ ++|+.|+|++|.+.+
T Consensus 101 ~l~-~l~~l~~L~~L~Ls~N~--l~-~l-~~l~~l~~L~~L~Ls~-N------~l~~l~~l~~l-~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 101 DLS-SLKDLKKLKSLSLEHNG--IS-DI-NGLVHLPQLESLYLGN-N------KITDITVLSRL-TKLDTLSLEDNQISD 167 (605)
T ss_dssp CCT-TSTTCTTCCEEECTTSC--CC-CC-GGGGGCTTCSEEECCS-S------CCCCCGGGGSC-TTCSEEECCSSCCCC
T ss_pred CCh-hhccCCCCCEEEecCCC--CC-CC-ccccCCCccCEEECCC-C------ccCCchhhccc-CCCCEEECcCCcCCC
Confidence 444 68889999999999883 32 23 4577888888888887 4 22 4456677 888888888888754
Q ss_pred CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCccc
Q 043839 304 DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL 364 (415)
Q Consensus 304 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~ 364 (415)
..+ ++.+++|+.|+| ++| .+..++ .+..+++|+.|++++|+..
T Consensus 168 ~~~--l~~l~~L~~L~L--------------s~N-~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYL--------------SKN-HISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CGG--GTTCTTCCEEEC--------------CSS-CCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred chh--hccCCCCCEEEC--------------cCC-CCCCCh-HHccCCCCCEEEccCCcCc
Confidence 433 666665555555 444 344442 3555666666666666554
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1e-15 Score=154.40 Aligned_cols=202 Identities=15% Similarity=0.069 Sum_probs=116.5
Q ss_pred ccCCcccEEEcCCcccccCcccccCccCCceEecCcc-cccccccCcEEEecCCCCCCCCCCcccCccccceec-cccCC
Q 043839 147 KKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITP-LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS-AVHPS 224 (415)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~-l~~~~ 224 (415)
..+++|+.|++++|.++.+|..|+++++|+.|++++. .+..++. +... +...+..|..++.+++|+.|+ +..+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~---ll~~-~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL---LMRA-LDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH---HHHH-HCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH---HHHh-cccccCCHHHHHHHHhcccCcchhhcc
Confidence 5678888999999998889998988888888887651 0011110 0000 112334556667777777776 33321
Q ss_pred -CCCcc------ccCC--CCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CCCCCCCCce
Q 043839 225 -SCTPD------ILGR--LPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SEYKFPPTLT 292 (415)
Q Consensus 225 -~~~~~------~l~~--l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~ 292 (415)
..++. .+.. ...|+.|++++| ....+|. ++.+++|+.|++++ | ++ +| .+..+ ++|+
T Consensus 422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n---~l~~lp~-~~~l~~L~~L~Ls~-N------~l~~lp~~~~~l-~~L~ 489 (567)
T 1dce_A 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHK---DLTVLCH-LEQLLLVTHLDLSH-N------RLRALPPALAAL-RCLE 489 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEECTTS---CCSSCCC-GGGGTTCCEEECCS-S------CCCCCCGGGGGC-TTCC
T ss_pred cchhhhhhhhcccccccCccCceEEEecCC---CCCCCcC-ccccccCcEeecCc-c------cccccchhhhcC-CCCC
Confidence 10000 0000 124667777776 2223444 66666666666666 4 22 56 66666 6677
Q ss_pred EEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce--EEcCCCccCccEEEEecCcccCCCh--
Q 043839 293 QLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW--TMGAGSMPKLESLILNPCAYLRKLP-- 368 (415)
Q Consensus 293 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~~~~lp-- 368 (415)
.|++++|.+++ +| .++.+ ++|++|++++| .++.+ |..++.+++|+.|++++|+..+..|
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l--------------~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANL--------------PRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTC--------------SSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred EEECCCCCCCC-Cc-ccCCC--------------CCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 77777666643 33 44443 34445555666 55555 6677778888888888887664333
Q ss_pred -hhhcCCCCCCeEE
Q 043839 369 -EELWCIKNLCKLE 381 (415)
Q Consensus 369 -~~l~~l~~L~~L~ 381 (415)
..+..+++|+.|+
T Consensus 553 ~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 553 ERLAEMLPSVSSIL 566 (567)
T ss_dssp THHHHHCTTCSEEE
T ss_pred HHHHHHCcccCccC
Confidence 1223367777775
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.9e-12 Score=130.11 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=59.0
Q ss_pred CCceEEEEEccccCCCCchhhcCCCCCCeEeecc--CCCC----CcccEEEeccCCCccceEEcCCCccCc-------cE
Q 043839 289 PTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--NSSF----PLLKILHLKSMLWLEEWTMGAGSMPKL-------ES 355 (415)
Q Consensus 289 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--~~~~----~~L~~L~l~~~~~l~~l~~~~~~l~~L-------~~ 355 (415)
++|+.|++++|.+++ +|. .+++|+.|++++ ...+ ++|++|++++| .++.+|. +.. +| +.
T Consensus 140 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 140 ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIF 211 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-CC----------CCEE
T ss_pred ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCC-CCCchhh-HHH--hhhcccccceE
Confidence 445555555554432 222 344555555544 1111 57888888888 6778877 444 77 99
Q ss_pred EEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839 356 LILNPCAYLRKLPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 356 L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 387 (415)
|++++|... .+|..+..+++|+.|++++++-
T Consensus 212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred EecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence 999999776 6999898999999999999874
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=3.9e-13 Score=122.38 Aligned_cols=142 Identities=21% Similarity=0.186 Sum_probs=74.3
Q ss_pred hccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839 146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS 219 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 219 (415)
+..+++|++|++++|.++.+| .+..+++|++|++++ +.++++++|++|++++|.+ ..+|... . ++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l-~~l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRL-KNLNGIP-S-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC-SCCTTCC-C-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCcc-CCcCccc-c-CcccEEE
Confidence 566777777777777777666 566666666666666 2255556666666663333 2233322 2 5566666
Q ss_pred cccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEc
Q 043839 220 AVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSN 298 (415)
Q Consensus 220 l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~ 298 (415)
+.++. ..++ .++.+++|+.|++++|. . ..++ .+..+++|+.|++++ |.+-. ++.+..+ ++|+.|++++
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~--i-~~~~-~l~~l~~L~~L~L~~-N~i~~----~~~l~~l-~~L~~L~l~~ 181 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNK--L-KSIV-MLGFLSKLEVLDLHG-NEITN----TGGLTRL-KKVNWIDLTG 181 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSC--C-CBCG-GGGGCTTCCEEECTT-SCCCB----CTTSTTC-CCCCEEEEEE
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCc--C-CCCh-HHccCCCCCEEECCC-CcCcc----hHHhccC-CCCCEEeCCC
Confidence 66555 3332 35556666666665552 2 1222 344555555555555 21000 2233444 5555555555
Q ss_pred cccC
Q 043839 299 TKLM 302 (415)
Q Consensus 299 ~~l~ 302 (415)
|.+.
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 5543
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=4e-13 Score=139.53 Aligned_cols=159 Identities=14% Similarity=0.017 Sum_probs=98.5
Q ss_pred CCCceeEEEEEeCCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCC
Q 043839 98 SLANVKRCFILKDLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHL 175 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L 175 (415)
....++++.+. .+.....+... ...|+.+.+.+...........+..+..++.|++|+|++|.+..+|..++++++|
T Consensus 171 s~~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 171 STPLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred cCCccceEEee-CCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 34457777776 54444333333 4455555544433211112345677999999999999999999999999999999
Q ss_pred ceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccC
Q 043839 176 KYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLS 247 (415)
Q Consensus 176 ~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 247 (415)
++|+|++ ..++++++|++|+|++|.+. .+|..++.+++|++|++.+|. ..+|..++.+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-- 326 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-- 326 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS--
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC--
Confidence 9999998 56889999999999966655 889999999999999999999 888999999999999999999
Q ss_pred cchhcHHHhhhcc
Q 043839 248 YHHSGVSKSLCEL 260 (415)
Q Consensus 248 ~~~~~~~~~l~~l 260 (415)
...+..|..+..+
T Consensus 327 ~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 327 PLEKQFLKILTEK 339 (727)
T ss_dssp CCCSHHHHHHHHH
T ss_pred ccCCCChHHHhhc
Confidence 5666666666543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=3.5e-12 Score=113.51 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=73.6
Q ss_pred CcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839 191 LMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL 268 (415)
Q Consensus 191 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (415)
-+.++.+ +.....+|.++. ++|++|++.++. ...+..+..+++|+.|++++| .. ..++..
T Consensus 21 ~~~v~c~-~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N--~l-~~i~~~------------ 82 (229)
T 3e6j_A 21 GTTVDCR-SKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN--QL-GALPVG------------ 82 (229)
T ss_dssp TTEEECT-TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CC-CCCCTT------------
T ss_pred CCEeEcc-CCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC--CC-CCcChh------------
Confidence 3455555 444455665543 566777776666 333455666666666666666 22 222111
Q ss_pred ecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCC
Q 043839 269 VNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAG 348 (415)
Q Consensus 269 ~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 348 (415)
.+..+ ++|+.|++++|.++...+..++.+++|+ +|++++| .++.+|..+.
T Consensus 83 --------------~~~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~--------------~L~Ls~N-~l~~lp~~~~ 132 (229)
T 3e6j_A 83 --------------VFDSL-TQLTVLDLGTNQLTVLPSAVFDRLVHLK--------------ELFMCCN-KLTELPRGIE 132 (229)
T ss_dssp --------------TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC--------------EEECCSS-CCCSCCTTGG
T ss_pred --------------hcccC-CCcCEEECCCCcCCccChhHhCcchhhC--------------eEeccCC-cccccCcccc
Confidence 23445 5555555555555433333333333333 3333444 3445555555
Q ss_pred CccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839 349 SMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 349 ~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.+++|+.|++++|....-.+..+..+++|+.|++.++|
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 55555555555554442222334555555555555443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=4.5e-12 Score=115.32 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=103.1
Q ss_pred cCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839 148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV 221 (415)
Q Consensus 148 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 221 (415)
.+..+..++++++.++.++ .+..+++|++|++++ +.++.+++|++|++++|.+ ..+|. ++.+++|++|++.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECC
Confidence 3455666677777777666 567777788887777 5566677788888874443 34444 7777788888887
Q ss_pred cCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEc
Q 043839 222 HPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSN 298 (415)
Q Consensus 222 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~ 298 (415)
++. ..++... . ++|+.|++++|. .. .+ +.+..+++|+.|++++ | ++ +|.+..+ ++|+.|++++
T Consensus 94 ~N~l~~l~~~~-~-~~L~~L~L~~N~--l~-~~-~~l~~l~~L~~L~Ls~-N------~i~~~~~l~~l-~~L~~L~L~~ 159 (263)
T 1xeu_A 94 RNRLKNLNGIP-S-ACLSRLFLDNNE--LR-DT-DSLIHLKNLEILSIRN-N------KLKSIVMLGFL-SKLEVLDLHG 159 (263)
T ss_dssp SSCCSCCTTCC-C-SSCCEEECCSSC--CS-BS-GGGTTCTTCCEEECTT-S------CCCBCGGGGGC-TTCCEEECTT
T ss_pred CCccCCcCccc-c-CcccEEEccCCc--cC-CC-hhhcCcccccEEECCC-C------cCCCChHHccC-CCCCEEECCC
Confidence 777 5554432 2 778888887772 22 22 3467777788888777 4 22 4455667 7788888888
Q ss_pred cccCCCCchhhcCCCCCCeEeecc
Q 043839 299 TKLMEDPMPTLEKLPLLEVLKLKQ 322 (415)
Q Consensus 299 ~~l~~~~~~~l~~l~~L~~L~l~~ 322 (415)
|.+.+. ..++.+++|+.|++++
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEE
T ss_pred CcCcch--HHhccCCCCCEEeCCC
Confidence 777544 5566666666666654
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=4.5e-12 Score=112.08 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=70.0
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS 224 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 224 (415)
+.++++++.++.+|..+. .+|+.|++++ ..+..+++|++|++++|.+....|..+..+++|++|+++++.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567777777777776553 3455555544 133344444444554444433334445555555555555554
Q ss_pred -CCCccc-cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccC
Q 043839 225 -SCTPDI-LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLM 302 (415)
Q Consensus 225 -~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~ 302 (415)
..+|.. +..+++|+.|++++| ......+. .+..+ ++|+.|++++|.++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N--~l~~~~~~---------------------------~~~~l-~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN--KINCLRVD---------------------------AFQDL-HNLNLLSLYDNKLQ 141 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS--CCCCCCTT---------------------------TTTTC-TTCCEEECCSSCCS
T ss_pred CCccCHhHccCCCCCCEEECCCC--CCCEeCHH---------------------------HcCCC-CCCCEEECCCCcCC
Confidence 333332 344555555555554 12222222 45555 66666666666665
Q ss_pred CCCchhhcCCCCCCeEeec
Q 043839 303 EDPMPTLEKLPLLEVLKLK 321 (415)
Q Consensus 303 ~~~~~~l~~l~~L~~L~l~ 321 (415)
+..+..++.+++|+.|+++
T Consensus 142 ~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 142 TIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCCTTTTTTCTTCCEEECC
T ss_pred EECHHHHhCCCCCCEEEeC
Confidence 5444455555555555554
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=4.3e-14 Score=142.54 Aligned_cols=180 Identities=18% Similarity=0.161 Sum_probs=130.7
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-------------cc-cCcccccCccCCceEe-cCc---
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-------------LD-LYPPGLENLFHLKYLK-LIT--- 182 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~-~lp~~i~~l~~L~~L~-l~~--- 182 (415)
.++++.|.+.++.. ..+|..++++++|+.|+++++. .. ..|..++.+++|+.|+ ++.
T Consensus 348 ~~~L~~L~Ls~n~L-----~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 348 DEQLFRCELSVEKS-----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp TTTSSSCCCCHHHH-----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred CccceeccCChhhH-----HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 56666666666654 2467889999999999998774 23 5667788888999888 443
Q ss_pred ----------cccccc--ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcc
Q 043839 183 ----------PLLKLM--QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYH 249 (415)
Q Consensus 183 ----------~~i~~l--~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 249 (415)
..+..+ ..|+.|++++|.+ ..+|. ++.+++|++|+++++. ..+|..++.+++|+.|++++|. .
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~--l 498 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA--L 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC--C
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCC-CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC--C
Confidence 122222 3588999995544 45776 8999999999999998 8888889999999999999982 3
Q ss_pred hhcHHHhhhccCCCcEEEeecCccccccccc--c--c-CCCCCCCCceEEEEEccccCCCCch---hhcCCCCCCeEe
Q 043839 250 HSGVSKSLCELHKLECLKLVNEGKMWQFSRM--I--L-SEYKFPPTLTQLSLSNTKLMEDPMP---TLEKLPLLEVLK 319 (415)
Q Consensus 250 ~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--l--p-~~~~lp~~L~~L~l~~~~l~~~~~~---~l~~l~~L~~L~ 319 (415)
..+| .++.+++|+.|++++ | ++ + | .+..+ ++|+.|++++|.+++.++. .+..+|+|+.|+
T Consensus 499 -~~lp-~l~~l~~L~~L~Ls~-N------~l~~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 -ENVD-GVANLPRLQELLLCN-N------RLQQSAAIQPLVSC-PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -CCCG-GGTTCSSCCEEECCS-S------CCCSSSTTGGGGGC-TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -CCCc-ccCCCCCCcEEECCC-C------CCCCCCCcHHHhcC-CCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 3356 788888888888887 4 33 4 6 77778 7888888888877554332 233467777665
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=8.1e-12 Score=111.17 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=47.7
Q ss_pred ccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-
Q 043839 152 LRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD- 229 (415)
Q Consensus 152 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~- 229 (415)
-+.++.+++.++.+|..+. + +|++|++++|.+....|..++.+++|++|++.++. ..++.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~----------------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--T----------------NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--T----------------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCEeEccCCCcCccCCCCC--C----------------CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence 4567777777777776543 3 44444455455555556666667777777777766 44443
Q ss_pred ccCCCCCCCeEEEecc
Q 043839 230 ILGRLPNVQTLRISGD 245 (415)
Q Consensus 230 ~l~~l~~L~~L~l~~~ 245 (415)
.+..+++|+.|++++|
T Consensus 83 ~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred hcccCCCcCEEECCCC
Confidence 3566777777777776
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=3.4e-12 Score=121.67 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=87.0
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCc--------cccc-ccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLK-LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP 223 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~-~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 223 (415)
++++++++.++.+|..+. ..+++|++++ ..+. ++++|++|++++|.+....+..+..+++|++|+++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 345555555555554332 2344555544 1222 5556666666644444334445666666677666666
Q ss_pred C-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-C-C---CCCCCCceEE
Q 043839 224 S-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-S-E---YKFPPTLTQL 294 (415)
Q Consensus 224 ~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~-~---~~lp~~L~~L 294 (415)
. ..++ ..+..+++|+.|++++| ......+..+..+++|+.|++++ | ++ +| . + ..+ ++|+.|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~~~~l~~L~~L~L~~-N------~l~~l~~~~~~~~~~l-~~L~~L 168 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNN--HIVVVDRNAFEDMAQLQKLYLSQ-N------QISRFPVELIKDGNKL-PKLMLL 168 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCS-S------CCCSCCGGGTC----C-TTCCEE
T ss_pred cCCcCCHHHhCCCcCCCEEECCCC--cccEECHHHhCCcccCCEEECCC-C------cCCeeCHHHhcCcccC-CcCCEE
Confidence 6 3333 23566667777777666 33333455566666666666666 4 22 44 2 2 346 677777
Q ss_pred EEEccccCCCCchhhcCCCCC--CeEeecc
Q 043839 295 SLSNTKLMEDPMPTLEKLPLL--EVLKLKQ 322 (415)
Q Consensus 295 ~l~~~~l~~~~~~~l~~l~~L--~~L~l~~ 322 (415)
++++|.++...+..+..++.+ +.|++.+
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 777777665555566666653 5566654
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=6e-12 Score=111.28 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=68.1
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCC-CcccCccccceeccccCC-CCCc-c
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPN-NYSSSLKDLIFISAVHPS-SCTP-D 229 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~-~~~~-~ 229 (415)
++++++++.++.+|..+.. .+++|++++ |.+....| ..++.+++|++|++.++. ..++ .
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~----------------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNN----------------NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCS----------------SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCC----------------CcCCccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence 5778888877777765532 334555444 22222212 123444444444444444 2222 2
Q ss_pred ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--c-c-CCCCCCCCceEEEEEccccCCCC
Q 043839 230 ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--I-L-SEYKFPPTLTQLSLSNTKLMEDP 305 (415)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--l-p-~~~~lp~~L~~L~l~~~~l~~~~ 305 (415)
.++.+++|++|++++| ......+..+..+++|+.|++++ | ++ + | .+..+ ++|+.|++++|.+++..
T Consensus 76 ~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~-N------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 76 AFEGASGVNEILLTSN--RLENVQHKMFKGLESLKTLMLRS-N------RITCVGNDSFIGL-SSVRLLSLYDNQITTVA 145 (220)
T ss_dssp TTTTCTTCCEEECCSS--CCCCCCGGGGTTCSSCCEEECTT-S------CCCCBCTTSSTTC-TTCSEEECTTSCCCCBC
T ss_pred HhCCCCCCCEEECCCC--ccCccCHhHhcCCcCCCEEECCC-C------cCCeECHhHcCCC-ccCCEEECCCCcCCEEC
Confidence 3444444444444444 22222233344444444444444 2 11 2 3 45556 66666666666665555
Q ss_pred chhhcCCCCCCeEeec
Q 043839 306 MPTLEKLPLLEVLKLK 321 (415)
Q Consensus 306 ~~~l~~l~~L~~L~l~ 321 (415)
+..++.+++|+.|+++
T Consensus 146 ~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TTTTTTCTTCCEEECC
T ss_pred HHHhcCCCCCCEEEec
Confidence 5555555555555554
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=1.4e-11 Score=108.91 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=78.0
Q ss_pred CCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCccccc-CcccccCccCCceEecCc-------
Q 043839 111 LTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDL-YPPGLENLFHLKYLKLIT------- 182 (415)
Q Consensus 111 ~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~------- 182 (415)
.....++....++++.|.+.++.. ..+.+..|..+++|++|++++|.++. .|..+.++++|++|++++
T Consensus 21 ~~l~~iP~~l~~~l~~L~l~~n~i----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 21 KGLTEIPTNLPETITEIRLEQNTI----KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp SCCSSCCSSCCTTCCEEECCSSCC----CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCcCcCCCccCcCCCEEECCCCcC----CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 333344444466788888887776 44555567788888888888888773 366677777777776665
Q ss_pred -ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecc
Q 043839 183 -PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGD 245 (415)
Q Consensus 183 -~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~ 245 (415)
..+..+++|++|++++|.+....|..+..+++|++|++.++. ..++. .+..+++|+.|++++|
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 123445555555555444444444455555555555555555 33322 3455555555555555
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3.2e-12 Score=105.62 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=87.9
Q ss_pred cCCcccEEEcCCcccc--cCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839 148 KFKHLRVLNLGSAVLD--LYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS 219 (415)
Q Consensus 148 ~~~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 219 (415)
..++|++|++++|.++ .+|..++.+++|++|++++ ..++++++|++|++++|.+...+|..++.+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4467888888888877 7777777788888888777 4556677788888886666665777777788888888
Q ss_pred cccCC-CCCc--cccCCCCCCCeEEEecccCcchhcHH---HhhhccCCCcEEEee
Q 043839 220 AVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSGVS---KSLCELHKLECLKLV 269 (415)
Q Consensus 220 l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~l~ 269 (415)
++++. ..++ ..++.+++|++|++++| ...+..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC--EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC--GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC--cccchHHHHHHHHHHCCCcccccCC
Confidence 88887 5443 67788888888888887 2333222 367778888887764
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=8.3e-12 Score=105.35 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=78.3
Q ss_pred ccCCcccEEEcCCcccc--cCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCcccccee
Q 043839 147 KKFKHLRVLNLGSAVLD--LYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFI 218 (415)
Q Consensus 147 ~~~~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 218 (415)
...++|++|++++|.++ .+|..+..+++|++|++++ ..+..+++|++|++++|.+...+|..++.+++|++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34477888888888887 7777777777777777766 345556667777777555555566656667777777
Q ss_pred ccccCC-CCCc--cccCCCCCCCeEEEecccCcchhcHH---HhhhccCCCcEEEeec
Q 043839 219 SAVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSGVS---KSLCELHKLECLKLVN 270 (415)
Q Consensus 219 ~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~l~~ 270 (415)
++.++. ..++ ..+..+++|+.|++++|. .....+ ..+..+++|+.|+++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE--VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG--GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc--CcchHHHHHHHHHhCccCcEecCCC
Confidence 777776 4443 566677777777777762 222211 2455555555555554
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=6.5e-12 Score=103.76 Aligned_cols=124 Identities=17% Similarity=0.224 Sum_probs=100.7
Q ss_pred ccccCcEEEecCCCCC-CCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCc
Q 043839 187 LMQKLMHLNFGSITMP-SPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLE 264 (415)
Q Consensus 187 ~l~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 264 (415)
..++|+.|++++|.+. +.+|..++.+++|++|++.++. ..+ ..++.+++|+.|++++| ...+.+|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN--RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS--CCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC--cccchHHHHhhhCCCCC
Confidence 3477889999977765 5888888999999999999998 555 77899999999999999 45555788888899999
Q ss_pred EEEeecCccccccccc--c--c-CCCCCCCCceEEEEEccccCCCCc---hhhcCCCCCCeEeec
Q 043839 265 CLKLVNEGKMWQFSRM--I--L-SEYKFPPTLTQLSLSNTKLMEDPM---PTLEKLPLLEVLKLK 321 (415)
Q Consensus 265 ~L~l~~~~~il~~l~L--l--p-~~~~lp~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~ 321 (415)
.|++++ + ++ + | .+..+ ++|++|++++|.+++..+ ..++.+++|+.|+++
T Consensus 92 ~L~ls~-N------~i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSG-N------KIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTT-S------CCCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCC-C------cCCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999988 5 22 2 2 66788 899999999998876554 478888888888875
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=5.9e-13 Score=138.23 Aligned_cols=143 Identities=11% Similarity=0.044 Sum_probs=94.5
Q ss_pred ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccC
Q 043839 183 PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH 261 (415)
Q Consensus 183 ~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 261 (415)
..+..+++|+.|++++|. ...+|..+..+++|++|+++++. ..+|..++.+++|+.|++++| ... .+|..++.++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N--~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN--RLT-SLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS--CCS-SCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC--cCC-ccChhhcCCC
Confidence 345566777777777444 44788888888889999988888 778888888889999999888 333 6788888888
Q ss_pred CCcEEEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCC-CCeEeecc---CC-CCCcccEEE
Q 043839 262 KLECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPL-LEVLKLKQ---NS-SFPLLKILH 333 (415)
Q Consensus 262 ~L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~-L~~L~l~~---~~-~~~~L~~L~ 333 (415)
+|+.|+++. | .+ +| .+..+ ++|+.|+|++|.+.+.+|..++.+.. +..+++.+ .+ ....|+.|+
T Consensus 294 ~L~~L~L~~-N------~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~ 365 (727)
T 4b8c_D 294 QLKYFYFFD-N------MVTTLPWEFGNL-CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE 365 (727)
T ss_dssp TCSEEECCS-S------CCCCCCSSTTSC-TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred CCCEEECCC-C------CCCccChhhhcC-CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeE
Confidence 888888887 5 33 78 88888 89999999999887766666654321 11233433 12 233567777
Q ss_pred eccC
Q 043839 334 LKSM 337 (415)
Q Consensus 334 l~~~ 337 (415)
++.+
T Consensus 366 l~~n 369 (727)
T 4b8c_D 366 INTD 369 (727)
T ss_dssp ----
T ss_pred eecc
Confidence 7665
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=2.5e-11 Score=107.25 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=75.9
Q ss_pred EEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccc-hHHHhccCCcccEEEcCCcccccCcc-cccCccCCceEecC
Q 043839 104 RCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGID-CENFCKKFKHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLI 181 (415)
Q Consensus 104 ~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~ 181 (415)
.+.+. ++....++....+.++.|.+.++... .+ ....|..+++|++|++++|.++.++. .+.++++|++|+++
T Consensus 15 ~l~~s-~n~l~~iP~~~~~~~~~L~L~~N~l~----~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCS-NQKLNKIPEHIPQYTAELRLNNNEFT----VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECC-SSCCSSCCSCCCTTCSEEECCSSCCC----EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeC-CCCcccCccCCCCCCCEEEcCCCcCC----ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 34444 44444455544556677777777663 22 22346777778888888777774443 56666666666666
Q ss_pred c--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecc
Q 043839 182 T--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGD 245 (415)
Q Consensus 182 ~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~ 245 (415)
+ ..++.+++|++|++++|.+....|..+..+++|++|++.++. ..+ |..+..+++|+.|++++|
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 5 224455555555555444444444455555555555555555 222 444555555555555554
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.4e-11 Score=117.31 Aligned_cols=160 Identities=17% Similarity=0.075 Sum_probs=110.4
Q ss_pred EEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhc-cCCcccEEEcCCcccccCc-ccccCccCCceEecC
Q 043839 104 RCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCK-KFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLI 181 (415)
Q Consensus 104 ~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 181 (415)
.+... +.....++....+.++.|.+.++.. ..+.+..+. ++++|++|++++|.++.++ ..+.++++|++|+++
T Consensus 22 ~l~c~-~~~l~~iP~~~~~~l~~L~Ls~N~l----~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCS-KQQLPNVPQSLPSYTALLDLSHNNL----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECC-SSCCSSCCSSCCTTCSEEECCSSCC----CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeC-CCCcCccCccCCCCCCEEECCCCCC----CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34444 4444556655566788898888877 455555666 8889999999999888555 457888888888888
Q ss_pred c--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcccc----CCCCCCCeEEEecccCc
Q 043839 182 T--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDIL----GRLPNVQTLRISGDLSY 248 (415)
Q Consensus 182 ~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l----~~l~~L~~L~l~~~~~~ 248 (415)
+ ..+.++++|++|++++|.+....|..+..+++|++|++.++. ..+|..+ ..+++|+.|++++| .
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N--~ 174 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--K 174 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS--C
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC--C
Confidence 7 346677888888888666665556677888888888888877 5565553 56788888888877 3
Q ss_pred chhcHHHhhhccCC--CcEEEeec
Q 043839 249 HHSGVSKSLCELHK--LECLKLVN 270 (415)
Q Consensus 249 ~~~~~~~~l~~l~~--L~~L~l~~ 270 (415)
.....+..+..++. ++.|++++
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCccCHHHhhhccHhhcceEEecC
Confidence 33333345556655 36677666
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=3.4e-11 Score=101.55 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=59.1
Q ss_pred cccCcEEEecCCCCC-CCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839 188 MQKLMHLNFGSITMP-SPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC 265 (415)
Q Consensus 188 l~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 265 (415)
.++|++|++++|.+. ..+|..+..+++|++|++.++. ..+ ..++.+++|+.|++++| .....+|..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN--RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC--CCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC--cCchHHHHHHhhCCCCCE
Confidence 467888888866665 5788888899999999999988 555 77888999999999998 344435555555666666
Q ss_pred EEeec
Q 043839 266 LKLVN 270 (415)
Q Consensus 266 L~l~~ 270 (415)
|++++
T Consensus 100 L~Ls~ 104 (168)
T 2ell_A 100 LNLSG 104 (168)
T ss_dssp EECBS
T ss_pred EeccC
Confidence 66555
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=8.3e-11 Score=110.50 Aligned_cols=92 Identities=17% Similarity=0.022 Sum_probs=68.6
Q ss_pred CCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCccc-EEEeccCCCccceE-EcCCCccCccE
Q 043839 287 FPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLK-ILHLKSMLWLEEWT-MGAGSMPKLES 355 (415)
Q Consensus 287 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~-~L~l~~~~~l~~l~-~~~~~l~~L~~ 355 (415)
+ ++|+.+++++|.++......+..|++|+.+++.+ ..++++|+ .+.+.+ .++.++ ..+.+|++|+.
T Consensus 225 ~-~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 M-PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp C-TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred c-CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 5 7888888888777655566788888888888865 45566787 888876 567776 55788999999
Q ss_pred EEEecCcccCCChhhhcCCCCCCeEE
Q 043839 356 LILNPCAYLRKLPEELWCIKNLCKLE 381 (415)
Q Consensus 356 L~l~~c~~~~~lp~~l~~l~~L~~L~ 381 (415)
+++.++....--+..+.++++|+.|.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 99887765432235788889998875
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=7e-11 Score=100.46 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=73.9
Q ss_pred hccCCcccEEEcCCcccccCcccccCcc-CCceEecCc------ccccccccCcEEEecCCCCCCCCCCcc-cCccccce
Q 043839 146 CKKFKHLRVLNLGSAVLDLYPPGLENLF-HLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYS-SSLKDLIF 217 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i-~~l~~L~~ 217 (415)
+.++.+|++|++++|.++.+|. +..+. +|++|++++ +.++.+++|++|++++|.+. .+|..+ +.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 4556677777777777776643 44444 666666666 34555666777777644443 444443 66777777
Q ss_pred eccccCC-CCCcc--ccCCCCCCCeEEEecccCcchhcHHH----hhhccCCCcEEEeec
Q 043839 218 ISAVHPS-SCTPD--ILGRLPNVQTLRISGDLSYHHSGVSK----SLCELHKLECLKLVN 270 (415)
Q Consensus 218 L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~----~l~~l~~L~~L~l~~ 270 (415)
|+++++. ..++. .++.+++|+.|++++|. . ...|. .+..+++|+.|+++.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~--i-~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP--V-TNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG--G-GGSTTHHHHHHHHCTTCSEETTEE
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC--C-CCcHhHHHHHHHHCCccceeCCCc
Confidence 7777776 55554 56677777777777762 2 23333 255666666666655
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.6e-10 Score=99.72 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=46.3
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCc-------c--cccccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------P--LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP 223 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 223 (415)
++++++++.++.+|..+.. +|++|++++ . .++++++|++|++++|.+....|..++.+++|++|+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888877775543 555555554 1 1334444444444444444333444444555555555444
Q ss_pred C-CCC-ccccCCCCCCCeEEEecc
Q 043839 224 S-SCT-PDILGRLPNVQTLRISGD 245 (415)
Q Consensus 224 ~-~~~-~~~l~~l~~L~~L~l~~~ 245 (415)
. ..+ +..++.+++|++|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSS
T ss_pred cCCccCHHHhcCCCCCCEEECCCC
Confidence 4 222 222444444444444444
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=1.1e-08 Score=98.62 Aligned_cols=239 Identities=9% Similarity=0.032 Sum_probs=161.1
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCccc-ccCccCCceEecCc-------ccccccccCc
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPG-LENLFHLKYLKLIT-------PLLKLMQKLM 192 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~-------~~i~~l~~L~ 192 (415)
+..++++.+...- ..+....|.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+.. ..+.+|.+|+
T Consensus 112 ~~~l~~i~ip~~i-----~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNSV-----KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPSTLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCTTC-----CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTTCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECCcc-----CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCCccEehHHHhhCcccCC
Confidence 3445555544322 23334556665 6888888765 5555443 334 4688888776 5677889999
Q ss_pred EEEecCCCCCCCCCCcccCccccceeccccCCCCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecC
Q 043839 193 HLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNE 271 (415)
Q Consensus 193 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (415)
.+++. .+....++.+.-...+|+.+.+...-..+ ...+..|++|+.+.+..+ ....-...+.. .+|+.+.+..
T Consensus 184 ~l~l~-~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 184 KADLS-KTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp EEECT-TSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEEET-
T ss_pred eeecC-CCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC---ccCcccccccc-CCccEEEeCC-
Confidence 99998 44455566654446889988887543333 344778999999999765 22222233444 6899998865
Q ss_pred ccccccccc--cc--CCCCCCCCceEEEEEccccC-----CCCchhhcCCCCCCeEeecc---------CCCCCcccEEE
Q 043839 272 GKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLM-----EDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILH 333 (415)
Q Consensus 272 ~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~ 333 (415)
.+ ++ .+..+ ++|+.+.+.++.+. ......+..|++|+.+.+.. ..++++|+.+.
T Consensus 258 -------~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 258 -------GVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp -------TCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEE
T ss_pred -------CccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEE
Confidence 23 54 77788 99999999988653 23455788899999999876 45668899999
Q ss_pred eccCCCccceE-EcCCCccCccEEEEecCcccCCChhhhcCCC-CCCeEEEec
Q 043839 334 LKSMLWLEEWT-MGAGSMPKLESLILNPCAYLRKLPEELWCIK-NLCKLELHW 384 (415)
Q Consensus 334 l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~-~L~~L~l~~ 384 (415)
|.. +++.+. ..+.++ +|+.+.+.++....-.+..+..++ +++.|.+..
T Consensus 330 lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 330 IPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 965 466665 347778 999999999865433334555664 778888765
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=7.5e-10 Score=95.48 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=65.1
Q ss_pred cEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc--ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839 192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD--ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL 268 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (415)
++++++++ ....+|..+.. +|++|++.++. ..++. .++.+++|++|++++| ...+..|..+..+++|+.|++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC--CCCCcCHhHcCCcccCCEEEC
Confidence 56666633 34566665543 77777777777 54443 2677777777777777 344444455555555555555
Q ss_pred ecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEee
Q 043839 269 VNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKL 320 (415)
Q Consensus 269 ~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 320 (415)
++ | ++ ++ .+..+ ++|++|++++|.+++..+..++.+++|++|++
T Consensus 86 s~-N------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 86 GE-N------KIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CS-C------CCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CC-C------cCCccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 55 3 22 22 34555 55555555555554444444444444444443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.5e-09 Score=93.64 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=9.2
Q ss_pred cEEEcCCcccccCcccc
Q 043839 153 RVLNLGSAVLDLYPPGL 169 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i 169 (415)
++++++++.++.+|..+
T Consensus 13 ~~l~~~~~~l~~ip~~~ 29 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI 29 (193)
T ss_dssp TEEECTTSCCSSCCSCC
T ss_pred CEEEcCCCCCCcCCCCC
Confidence 45556665555555433
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=6.3e-11 Score=102.80 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=64.9
Q ss_pred hHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccc
Q 043839 142 CENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKD 214 (415)
Q Consensus 142 ~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 214 (415)
++..+.++++|++|++++|.++.+| .+.++++|++|++++ ..+..+++|++|++++|.+. .+| .++.+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~ 116 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCC-ccccCCC
Confidence 3457888888999999888888877 777777777777776 22233456666666644333 233 4556666
Q ss_pred cceeccccCC-CCCcc--ccCCCCCCCeEEEecc
Q 043839 215 LIFISAVHPS-SCTPD--ILGRLPNVQTLRISGD 245 (415)
Q Consensus 215 L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~ 245 (415)
|++|++.++. ..++. .+..+++|+.|++++|
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 6666666665 33332 4566666666666665
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=2e-09 Score=92.93 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=29.1
Q ss_pred cEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecc
Q 043839 192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGD 245 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 245 (415)
++++++ ++....+|.++. ++|++|++.++. ..+|..+..+++|+.|++++|
T Consensus 13 ~~l~~~-~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N 64 (193)
T 2wfh_A 13 TVVRCS-NKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN 64 (193)
T ss_dssp TEEECT-TSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS
T ss_pred CEEEcC-CCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC
Confidence 345555 333445555443 456666666666 555556666666666666665
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=1e-11 Score=107.90 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=69.6
Q ss_pred hccCCcccEEEcCCcccc-cCc------ccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCcccccee
Q 043839 146 CKKFKHLRVLNLGSAVLD-LYP------PGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFI 218 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~-~lp------~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 218 (415)
+.....++.++++++.+. ..| ..++++++|++| ++++|.+. .+| .++.+++|++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L----------------~ls~n~l~-~l~-~~~~l~~L~~L 75 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHL----------------ALSTNNIE-KIS-SLSGMENLRIL 75 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEE----------------ECSEEEES-CCC-CHHHHTTCCEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEE----------------ECCCCCCc-ccc-ccccCCCCCEE
Confidence 445556666666655554 333 345444444444 44434332 255 56667777777
Q ss_pred ccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc---CCCCCCCCce
Q 043839 219 SAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL---SEYKFPPTLT 292 (415)
Q Consensus 219 ~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp---~~~~lp~~L~ 292 (415)
++.++. ..+|..+..+++|+.|++++| ....++ .+..+++|+.|++++ | ++ +| .+..+ ++|+
T Consensus 76 ~l~~n~l~~l~~~~~~~~~L~~L~L~~N---~l~~l~-~~~~l~~L~~L~l~~-N------~i~~~~~~~~l~~l-~~L~ 143 (198)
T 1ds9_A 76 SLGRNLIKKIENLDAVADTLEELWISYN---QIASLS-GIEKLVNLRVLYMSN-N------KITNWGEIDKLAAL-DKLE 143 (198)
T ss_dssp EEEEEEECSCSSHHHHHHHCSEEEEEEE---ECCCHH-HHHHHHHSSEEEESE-E------ECCCHHHHHHHTTT-TTCS
T ss_pred ECCCCCcccccchhhcCCcCCEEECcCC---cCCcCC-ccccCCCCCEEECCC-C------cCCchhHHHHHhcC-CCCC
Confidence 777766 666666666677777777776 222344 455556666666655 3 11 11 24445 5666
Q ss_pred EEEEEccccC
Q 043839 293 QLSLSNTKLM 302 (415)
Q Consensus 293 ~L~l~~~~l~ 302 (415)
+|++++|.+.
T Consensus 144 ~L~l~~N~l~ 153 (198)
T 1ds9_A 144 DLLLAGNPLY 153 (198)
T ss_dssp EEEECSCHHH
T ss_pred EEEecCCccc
Confidence 6666666543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=4.2e-09 Score=98.81 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=81.6
Q ss_pred CCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhh
Q 043839 234 LPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTL 309 (415)
Q Consensus 234 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l 309 (415)
..++..+.+.+. ............+++|+.+++.. + ++ +| .|..+ .+|+.+++.++ ++......+
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~-n------~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISK-T------NATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTT-B------CCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTT
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCC-C------CcceecHhhhhCC-CCCCEEECCcc-cceehHHHh
Confidence 344555555554 12222222223478999999987 4 23 66 67888 99999999987 555556788
Q ss_pred cCCCCCC-eEeecc---------CCCCCcccEEEeccCCCccceEE-cCCCccCccEEEE
Q 043839 310 EKLPLLE-VLKLKQ---------NSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLIL 358 (415)
Q Consensus 310 ~~l~~L~-~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l 358 (415)
..|++|+ .+.+.+ ..++++|+.+++..+ .++.++. .+.++++|+.+..
T Consensus 270 ~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 9999999 999976 556789999999877 7787774 5889999998863
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=7.4e-10 Score=94.05 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=90.7
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------cc-ccccccCc
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PL-LKLMQKLM 192 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~-i~~l~~L~ 192 (415)
+++++.|.+.++... .+ +......++|++|++++|.++.+ ..+..+++|++|++++ +. ++.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~----~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP----VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCC----SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCc----hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 667888888877663 22 23333334888888888888766 5677888888888888 23 37788999
Q ss_pred EEEecCCCCCCCCCC--cccCccccceeccccCC-CCCccc----cCCCCCCCeEEEecc
Q 043839 193 HLNFGSITMPSPPNN--YSSSLKDLIFISAVHPS-SCTPDI----LGRLPNVQTLRISGD 245 (415)
Q Consensus 193 ~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~-~~~~~~----l~~l~~L~~L~l~~~ 245 (415)
+|++++|.+ ..+|. .++.+++|++|++.++. ...|.. ++.+++|+.|+++.+
T Consensus 92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999995554 66776 78899999999999998 666664 889999999999988
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.91 E-value=8.3e-09 Score=87.53 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCC
Q 043839 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSIT 200 (415)
Q Consensus 121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~ 200 (415)
.++++.|.+.++.. ..+.+..+..+++|++|++++|.++.+|.. .++.+++|++|++++|.
T Consensus 27 ~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 27 PSSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSQNQIQSLPDG---------------VFDKLTKLTILYLHENK 87 (177)
T ss_dssp CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCSSC
T ss_pred CCCCcEEEeCCCcc----cEeCHHHhcCcccccEEECCCCcceEeChh---------------HccCCCccCEEECCCCC
Confidence 44555555555544 233333445555555555555555544322 23455666666666555
Q ss_pred CCCCCCCcccCccccceeccccCC-CCCccc-cCCCCCCCeEEEecc
Q 043839 201 MPSPPNNYSSSLKDLIFISAVHPS-SCTPDI-LGRLPNVQTLRISGD 245 (415)
Q Consensus 201 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~ 245 (415)
+....+..++.+++|++|++.++. ..++.. +..+++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 554444456778888888888877 555554 467888888888887
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.90 E-value=7.5e-09 Score=87.78 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=64.4
Q ss_pred ccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-
Q 043839 152 LRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD- 229 (415)
Q Consensus 152 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~- 229 (415)
.+.++++++.++.+|..+. .+|++| ++++|.+....+..++.+++|++|++.++. ..++.
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L----------------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRL----------------ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEE----------------ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEE----------------EeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence 4567777777766664432 233333 333333332222234555555555555555 33332
Q ss_pred ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCC
Q 043839 230 ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDP 305 (415)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~ 305 (415)
.++.+++|+.|++++| ......+..+..+++|+.|++++ | ++ +| .+..+ ++|++|++++|.+.+..
T Consensus 71 ~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~-N------~l~~~~~~~~~~l-~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 71 VFDKLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDT-N------QLKSVPDGIFDRL-TSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------CCSCCCTTTTTTC-TTCCEEECCSSCBCCCH
T ss_pred HccCCCccCEEECCCC--CccccCHHHhhCCcccCEEECcC-C------cceEeCHHHhcCC-cccCEEEecCCCeeccC
Confidence 2455555555555555 22222222344555555555555 3 22 44 34567 77888888887765543
No 138
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.77 E-value=2e-09 Score=108.28 Aligned_cols=71 Identities=25% Similarity=0.326 Sum_probs=58.0
Q ss_pred hcccCCCccchHHHHh-----------hcccCCCCceech----hh--------------------HHHhhcCCCeeeee
Q 043839 15 IYSVMGLPFHLKVCYI-----------YLCVYRPSIEIST----RQ--------------------LYQLINPSRLHSSK 59 (415)
Q Consensus 15 ~lSY~~L~~~lk~cfl-----------~~~~fp~~~~i~~----~~--------------------Li~L~~~~li~~~~ 59 (415)
++||++||.++|+||+ |||+||+|+.|+. .. +-.|+++||++...
T Consensus 368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~ 447 (549)
T 2a5y_B 368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGK 447 (549)
T ss_dssp SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEE
T ss_pred hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEec
Confidence 4899999999999999 9999999999871 11 11199999999876
Q ss_pred cCCCCceeEEEeChHHHHHHHHHhhhcCc
Q 043839 60 RRAGGTIKACYVPSIVYTSLVLVADKTGF 88 (415)
Q Consensus 60 ~~~~~~~~~~~mhdli~~l~~~~~~~~~~ 88 (415)
.+ ....|+|||++|++|+.++.++++
T Consensus 448 ~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 448 RM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 43 346799999999999988876543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=3.9e-08 Score=82.87 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=56.6
Q ss_pred ccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839 152 LRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP 223 (415)
Q Consensus 152 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 223 (415)
.++++++++.++.+|..+. .+|++|++++ ..+.++++|++|++++|.+....+..+..+++|++|++.++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5678888888877776553 5666666665 23455566666666644444333333566667777777666
Q ss_pred C-CCCcc-ccCCCCCCCeEEEecc
Q 043839 224 S-SCTPD-ILGRLPNVQTLRISGD 245 (415)
Q Consensus 224 ~-~~~~~-~l~~l~~L~~L~l~~~ 245 (415)
. ..++. .+..+++|+.|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 6 44444 3666667777777666
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.72 E-value=4.3e-08 Score=82.92 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=50.7
Q ss_pred cEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCc-ccCccccceeccccC
Q 043839 153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKDLIFISAVHP 223 (415)
Q Consensus 153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~ 223 (415)
++++++++.++.+|..+. .+|++|++++ ..++++++|++|++++|.+. .+|.. ++.+++|++|++.++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCC
Confidence 567777777777776553 4555555554 23444555555555534333 33333 456666666666666
Q ss_pred C-CCCccc-cCCCCCCCeEEEecc
Q 043839 224 S-SCTPDI-LGRLPNVQTLRISGD 245 (415)
Q Consensus 224 ~-~~~~~~-l~~l~~L~~L~l~~~ 245 (415)
. ..++.. +..+++|+.|++++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 5 444443 556666666666665
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=1.6e-07 Score=90.35 Aligned_cols=163 Identities=9% Similarity=0.015 Sum_probs=78.1
Q ss_pred ccCcEEEecCCCCCCCCCCcccCccccceeccccCCCCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEE
Q 043839 189 QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLK 267 (415)
Q Consensus 189 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (415)
.+|+.+.+. +....--...+..+++|+.+.+...-..+.. .+.. .+|+.+.+... ....-...+..+++|+.+.
T Consensus 203 ~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEE
Confidence 445555554 2222112223445555555555432211111 1222 45555555432 2222233445555666665
Q ss_pred eecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEe
Q 043839 268 LVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHL 334 (415)
Q Consensus 268 l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l 334 (415)
+.. +.+-. -.. ++ .+..+ ++|+.+.+.++ ++......+..|++|+.+.+.. ..++ +|+.+.+
T Consensus 278 l~~-~~~~~-~~~~~I~~~aF~~c-~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 278 TYG-STFND-DPEAMIHPYCLEGC-PKLARFEIPES-IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp EES-SCCCC-CTTCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEE
T ss_pred eCC-ccccC-CcccEECHHHhhCC-ccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEE
Confidence 544 10000 000 23 45556 66666666632 3333344566667777776654 3445 7888888
Q ss_pred ccCCCccceE-EcCCCcc-CccEEEEecCc
Q 043839 335 KSMLWLEEWT-MGAGSMP-KLESLILNPCA 362 (415)
Q Consensus 335 ~~~~~l~~l~-~~~~~l~-~L~~L~l~~c~ 362 (415)
.++ ....++ ..+.+++ +++.|.+-...
T Consensus 353 ~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 353 EGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 877 344443 3355564 67788776543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=5.6e-10 Score=106.56 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCCCCeEEEecccCcch----hcHHHhhhccCCCcEEEeecCccc----cccccccc-CCCCCCCCceEEEEEccccCC
Q 043839 234 LPNVQTLRISGDLSYHH----SGVSKSLCELHKLECLKLVNEGKM----WQFSRMIL-SEYKFPPTLTQLSLSNTKLME 303 (415)
Q Consensus 234 l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~i----l~~l~Llp-~~~~lp~~L~~L~l~~~~l~~ 303 (415)
.++|++|++++|. .. ..++..+..+++|++|++++ |.+ ... ++ .+... ++|+.|++++|.++.
T Consensus 154 ~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~---L~~~L~~~-~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 154 QCQITTLRLSNNP--LTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLEL---LAAQLDRN-RQLQELNVAYNGAGD 225 (372)
T ss_dssp TCCCCEEECCSSC--CHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHH---HHHHGGGC-SCCCEEECCSSCCCH
T ss_pred CCccceeeCCCCC--CChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHH---HHHHHhcC-CCcCeEECCCCCCCH
Confidence 4555666665552 21 22334445555566666655 311 000 22 33445 567777777776644
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=5.5e-09 Score=99.01 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCcccEEEeccCCCccceE---EcCCCccCccEEEEecCcccC----CChhhhcCCCCCCeEEEecCC
Q 043839 325 SFPLLKILHLKSMLWLEEWT---MGAGSMPKLESLILNPCAYLR----KLPEELWCIKNLCKLELHWPQ 386 (415)
Q Consensus 325 ~~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~~~----~lp~~l~~l~~L~~L~l~~c~ 386 (415)
.||+|++|.+.+|......+ .....+|+|+.|+++.|.... .++.++.++++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 46777777777764332221 112457778888887765443 234445567778888887765
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.51 E-value=2.7e-07 Score=77.62 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=56.3
Q ss_pred CcEEEecCCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839 191 LMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL 268 (415)
Q Consensus 191 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (415)
.+.++++ ++....+|..+. ++|++|++.++. ..+ +..++.+++|++|++++| ......+..+..+++|+.|++
T Consensus 11 ~~~l~~s-~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCS-GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN--QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECT-TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeC-CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC--CcCccChhhccCCCCCCEEEC
Confidence 4566777 444455676553 677778877777 444 555777777888887777 233222223345555555555
Q ss_pred ecCccccccccc--cc--CCCCCCCCceEEEEEccccC
Q 043839 269 VNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLM 302 (415)
Q Consensus 269 ~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~ 302 (415)
++ | ++ +| .+..+ ++|+.|++++|.+.
T Consensus 86 ~~-N------~l~~~~~~~~~~l-~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 ND-N------QLKSIPRGAFDNL-KSLTHIWLLNNPWD 115 (170)
T ss_dssp CS-S------CCCCCCTTTTTTC-TTCCEEECCSSCBC
T ss_pred CC-C------ccCEeCHHHhcCC-CCCCEEEeCCCCCC
Confidence 55 3 22 33 34455 55555555555543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=1.5e-08 Score=96.57 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=70.6
Q ss_pred cccCcEEEecCCCCCCCCCCcc-----cCccccceeccccCC------CCCccccCCCCCCCeEEEecccCcchh----c
Q 043839 188 MQKLMHLNFGSITMPSPPNNYS-----SSLKDLIFISAVHPS------SCTPDILGRLPNVQTLRISGDLSYHHS----G 252 (415)
Q Consensus 188 l~~L~~L~l~~~~~~~~~p~~i-----~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~----~ 252 (415)
+++|++|++++|.+.......+ ...++|++|++.+|. ..++..+..+++|++|++++|. ..+ .
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~~~ 202 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGLEL 202 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHHHH
Confidence 4566777777555433222222 234667888887776 2344555677888888888873 322 3
Q ss_pred HHHhhhccCCCcEEEeecCccc----cccccccc-CCCCCCCCceEEEEEccccCCCCchhhcC
Q 043839 253 VSKSLCELHKLECLKLVNEGKM----WQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEK 311 (415)
Q Consensus 253 ~~~~l~~l~~L~~L~l~~~~~i----l~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~ 311 (415)
++..+...++|+.|++++ |.+ ... ++ .+... ++|++|++++|.++......+..
T Consensus 203 L~~~L~~~~~L~~L~Ls~-N~i~~~g~~~---l~~~L~~~-~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAY-NGAGDTAALA---LARAAREH-PSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHGGGCSCCCEEECCS-SCCCHHHHHH---HHHHHHHC-SSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhcCCCcCeEECCC-CCCCHHHHHH---HHHHHHhC-CCCCEEeccCCCCCHHHHHHHHH
Confidence 456667777888888887 421 000 22 33456 78899999988876554444443
No 146
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.49 E-value=8.1e-08 Score=105.71 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=60.8
Q ss_pred hcccCCCccchHHHHhhcccCCCCceechhhHHH---------------hhcCCCeeeeecCCCCceeEEEeChHHHHHH
Q 043839 15 IYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ---------------LINPSRLHSSKRRAGGTIKACYVPSIVYTSL 79 (415)
Q Consensus 15 ~lSY~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~---------------L~~~~li~~~~~~~~~~~~~~~mhdli~~l~ 79 (415)
.+||+.||+++|+||+|||+||+++.|+++.++. |++++|++... .++...|+|||++|+++
T Consensus 369 ~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~ 445 (1249)
T 3sfz_A 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFL 445 (1249)
T ss_dssp HHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHH
Confidence 4799999999999999999999999999988887 99999999754 34456799999999999
Q ss_pred HHHhhhc
Q 043839 80 VLVADKT 86 (415)
Q Consensus 80 ~~~~~~~ 86 (415)
+..+.++
T Consensus 446 ~~~~~~~ 452 (1249)
T 3sfz_A 446 TEKNRSQ 452 (1249)
T ss_dssp HHHTGGG
T ss_pred HhhhhHH
Confidence 9887654
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.48 E-value=3.5e-07 Score=77.26 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=31.8
Q ss_pred cEEEecCCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecc
Q 043839 192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGD 245 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~ 245 (415)
+.++++ ++....+|..+. ++|++|++.++. ..+ |..++.+++|+.|++++|
T Consensus 15 ~~l~~~-~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 15 TLVNCQ-NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN 67 (174)
T ss_dssp SEEECC-SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeC-CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 455666 444456666554 667777777776 333 455667777777777776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=1.2e-07 Score=89.82 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=84.5
Q ss_pred ccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhh--ccCCCcEEEeec-Cc----cc-ccccc
Q 043839 209 SSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC--ELHKLECLKLVN-EG----KM-WQFSR 279 (415)
Q Consensus 209 i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~--~l~~L~~L~l~~-~~----~i-l~~l~ 279 (415)
+..+++|+.|.+.++. ..++. + .+++|++|++..+ .........+. .+++|++|+++. .+ +. ++.
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~--~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~-- 241 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG--GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV-- 241 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS--BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG--
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecC--CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH--
Confidence 3445556666665543 22222 2 2677777777766 23333333443 567777777642 01 00 000
Q ss_pred cc-cCC--CCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccc-----eEEcCCCcc
Q 043839 280 MI-LSE--YKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEE-----WTMGAGSMP 351 (415)
Q Consensus 280 Ll-p~~--~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~ 351 (415)
+ +.+ ..+ |+|++|.+.+|.+.......+.. ...+|+|++|+|+.| .++. ++..+..++
T Consensus 242 -l~~~l~~~~~-p~Lr~L~L~~~~i~~~~~~~la~-----------a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~ 307 (362)
T 2ra8_A 242 -FRPLFSKDRF-PNLKWLGIVDAEEQNVVVEMFLE-----------SDILPQLETMDISAG-VLTDEGARLLLDHVDKIK 307 (362)
T ss_dssp -TGGGSCTTTC-TTCCEEEEESCTTHHHHHHHHHH-----------CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHT
T ss_pred -HHHHHhcCCC-CCcCEEeCCCCCCchHHHHHHHh-----------CccCCCCCEEECCCC-CCChHHHHHHHhhcccCC
Confidence 1 111 246 88888888888765433333332 124567788888776 4543 344446789
Q ss_pred CccEEEEecCcccCCChhhhcC-CCCCCeEEEecCC
Q 043839 352 KLESLILNPCAYLRKLPEELWC-IKNLCKLELHWPQ 386 (415)
Q Consensus 352 ~L~~L~l~~c~~~~~lp~~l~~-l~~L~~L~l~~c~ 386 (415)
+|+.|++++|......-..+.. + ...+++++..
T Consensus 308 ~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 308 HLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9999999999754322222322 2 3557776543
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=3.1e-06 Score=81.17 Aligned_cols=94 Identities=21% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceE-EcCCCccC
Q 043839 283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPK 352 (415)
Q Consensus 283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~ 352 (415)
.+..+ ..++.+......+. ...+..+.+|+.+.+.. ..++.+|+.+.|.. .++.+. ..+.+|++
T Consensus 271 ~F~~~-~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 271 LFYNC-SGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS 344 (394)
T ss_dssp TTTTC-TTCCEEEECSSEEC---TTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred ccccc-cccceeccCceeec---cccccccccccccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence 34445 55666555443321 23456778888888765 44567888888864 466665 34778899
Q ss_pred ccEEEEecCcccCCCh-hhhcCCCCCCeEEEec
Q 043839 353 LESLILNPCAYLRKLP-EELWCIKNLCKLELHW 384 (415)
Q Consensus 353 L~~L~l~~c~~~~~lp-~~l~~l~~L~~L~l~~ 384 (415)
|+.+.+..+ +..++ ..+.+|++|+.+++..
T Consensus 345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 345 LSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 999988655 33443 5688899999999975
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=1.2e-06 Score=82.46 Aligned_cols=86 Identities=13% Similarity=-0.013 Sum_probs=47.1
Q ss_pred hccCCcccEEEcCC-cccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC
Q 043839 146 CKKFKHLRVLNLGS-AVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS 224 (415)
Q Consensus 146 ~~~~~~L~~L~l~~-~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 224 (415)
+..+++|++|+|++ |.++.+|. ..++++++|++|+|++|.+....|..++.+++|++|+++++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~---------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL---------------RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG---------------GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred CCCCCCeeEEEccCCCCCCCcCh---------------hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 45555555555553 44553331 234455555566666455554455556677777777777766
Q ss_pred -CCCccccCCCCCCCeEEEeccc
Q 043839 225 -SCTPDILGRLPNVQTLRISGDL 246 (415)
Q Consensus 225 -~~~~~~l~~l~~L~~L~l~~~~ 246 (415)
..+|..+....+|+.|++.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 5555443222237777776663
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=1e-06 Score=73.90 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=56.4
Q ss_pred CCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE-EcCCC----ccCccEEEEecCcc
Q 043839 289 PTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT-MGAGS----MPKLESLILNPCAY 363 (415)
Q Consensus 289 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~----l~~L~~L~l~~c~~ 363 (415)
..|++|++++|.++......+..++ +|++|+|++|..++... ..+.. +++|+.|++++|+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~--------------~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQ--------------YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCS--------------CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCC--------------CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 4799999999998766665555554 55555567776666322 12233 35788888888875
Q ss_pred cCC-ChhhhcCCCCCCeEEEecCCh
Q 043839 364 LRK-LPEELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 364 ~~~-lp~~l~~l~~L~~L~l~~c~~ 387 (415)
+++ --..+.++++|++|++++||.
T Consensus 127 ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 127 VTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp CCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred CCHHHHHHHhcCCCCCEEECCCCCC
Confidence 542 113466788888888888873
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=7.3e-06 Score=78.59 Aligned_cols=92 Identities=12% Similarity=0.036 Sum_probs=66.8
Q ss_pred CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceE-EcCCCccC
Q 043839 283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPK 352 (415)
Q Consensus 283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~ 352 (415)
.+..+ .+|+.+.+..+ ++......+..|.+|+.+++.. ..++.+|+.+.+..+ ++.+. ..+.+|++
T Consensus 292 ~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTT
T ss_pred ccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCC
Confidence 55667 88999988765 3333445678889999998865 455678999888653 66665 35789999
Q ss_pred ccEEEEecCcccCCChhhhcCCCCCCeE
Q 043839 353 LESLILNPCAYLRKLPEELWCIKNLCKL 380 (415)
Q Consensus 353 L~~L~l~~c~~~~~lp~~l~~l~~L~~L 380 (415)
|+.+.+..+- ..+...+.++++|+.+
T Consensus 368 L~~i~lp~~~--~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPKRL--EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEGGG--GGGGGGBCTTCEEEEE
T ss_pred CCEEEECCCC--EEhhheecCCCCCcEE
Confidence 9999997653 2345668888888775
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.14 E-value=4.2e-06 Score=78.71 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=19.4
Q ss_pred CcccCccccceeccccCC-CC-CccccCCCCCCCeEEEecc
Q 043839 207 NYSSSLKDLIFISAVHPS-SC-TPDILGRLPNVQTLRISGD 245 (415)
Q Consensus 207 ~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~ 245 (415)
..++.+++|++|+++++. .. .+..++.+++|+.|++++|
T Consensus 50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555555555555555 22 2233455555555555554
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.12 E-value=0.00012 Score=70.13 Aligned_cols=251 Identities=10% Similarity=0.050 Sum_probs=138.1
Q ss_pred ceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc---cccCc-ccccCccCCceEecCc-------ccccccccC
Q 043839 123 YLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV---LDLYP-PGLENLFHLKYLKLIT-------PLLKLMQKL 191 (415)
Q Consensus 123 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~lp-~~i~~l~~L~~L~l~~-------~~i~~l~~L 191 (415)
.|+++.+-.. . ..+-...|.+|++|+.+.+..+. ++.+. .++..+.+|+.+.+.. ..+..+.+|
T Consensus 65 ~L~sI~iP~s-v----t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT-V----TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECTT-C----CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTC
T ss_pred cCEEEEECCC-e----eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhccc
Confidence 3666666543 2 33445567778888888776543 33333 2344566666665544 445566777
Q ss_pred cEEEecCCCCCCCCCCcccCccccceeccccCCCCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecC
Q 043839 192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNE 271 (415)
Q Consensus 192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (415)
+.+.+. .....--...+..+.+|+.+.+...-..+....-...+|+.+.+... ....-...+..+.++........
T Consensus 140 ~~i~lp-~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~---~~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 140 DTVTIP-EGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAK---VTRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp CEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTT---CCEECTTTTTTCTTCCEEEECCS
T ss_pred cccccc-ceeeeecccceecccccccccccceeeEeccccccccceeEEEECCc---ccccccchhhhccccceeccccc
Confidence 777775 32222222234556666666654432111111112244555555443 11111222333444444332220
Q ss_pred ------ccc-------------------cccc----cc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeE
Q 043839 272 ------GKM-------------------WQFS----RM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVL 318 (415)
Q Consensus 272 ------~~i-------------------l~~l----~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 318 (415)
+.+ +..+ .+ +. .+..+ ..|+.+.+..... ......+.++++|+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c-~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i 293 (394)
T 4gt6_A 216 SYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSC-AYLASVKMPDSVV-SIGTGAFMNCPALQDI 293 (394)
T ss_dssp SSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTC-SSCCEEECCTTCC-EECTTTTTTCTTCCEE
T ss_pred ccccccceeecccccccccccccccccccceEEcCCcceEcccceeeec-ccccEEecccccc-eecCcccccccccccc
Confidence 000 0000 00 22 34566 7788887765431 2234466778888888
Q ss_pred eecc---------CCCCCcccEEEeccCCCccceE-EcCCCccCccEEEEecCcccCCCh-hhhcCCCCCCeEEEecCCh
Q 043839 319 KLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPKLESLILNPCAYLRKLP-EELWCIKNLCKLELHWPQP 387 (415)
Q Consensus 319 ~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~~~~lp-~~l~~l~~L~~L~l~~c~~ 387 (415)
.+.. ..++.+|+.+.|.. .++.+. ..+.+|.+|+.+.|-.+ +..++ ..+.+|++|+.+++.+...
T Consensus 294 ~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 294 EFSSRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred cCCCcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee
Confidence 8865 45567899888865 466665 35788999999999654 33454 5788999999999988654
Q ss_pred h
Q 043839 388 H 388 (415)
Q Consensus 388 ~ 388 (415)
.
T Consensus 370 ~ 370 (394)
T 4gt6_A 370 Q 370 (394)
T ss_dssp H
T ss_pred e
Confidence 3
No 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.09 E-value=1.1e-06 Score=92.15 Aligned_cols=60 Identities=23% Similarity=0.119 Sum_probs=50.5
Q ss_pred hcccCCCccch-HHHHhhcccCCCCceechhhHHH----------------hhcCCCeeeeecCCCCceeEEEeChHHHH
Q 043839 15 IYSVMGLPFHL-KVCYIYLCVYRPSIEISTRQLYQ----------------LINPSRLHSSKRRAGGTIKACYVPSIVYT 77 (415)
Q Consensus 15 ~lSY~~L~~~l-k~cfl~~~~fp~~~~i~~~~Li~----------------L~~~~li~~~~~~~~~~~~~~~mhdli~~ 77 (415)
++||+.||+++ |+||+|||+||+++.|+++.++. |+++||++.. +....|+|||++++
T Consensus 360 elSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllE 434 (1221)
T 1vt4_I 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLE 434 (1221)
T ss_dssp HHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHH
Confidence 47999999999 99999999999999998776543 9999999873 11246999999998
Q ss_pred HH
Q 043839 78 SL 79 (415)
Q Consensus 78 l~ 79 (415)
++
T Consensus 435 Lr 436 (1221)
T 1vt4_I 435 LK 436 (1221)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 156
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.05 E-value=3.5e-06 Score=85.30 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=56.2
Q ss_pred hcccCCCccchHHHHhhcccCCCCceechhhHHH---------------hhcCCCeeeeecCCCCceeEEEeChHHHHHH
Q 043839 15 IYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ---------------LINPSRLHSSKRRAGGTIKACYVPSIVYTSL 79 (415)
Q Consensus 15 ~lSY~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~---------------L~~~~li~~~~~~~~~~~~~~~mhdli~~l~ 79 (415)
..||+.||++.|.||++||+||+|+.|+.+.++. |+++++++... ++....|+|||++++++
T Consensus 369 ~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~ 445 (591)
T 1z6t_A 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFL 445 (591)
T ss_dssp HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHH
Confidence 4799999999999999999999999998876654 89999998654 23446799999999999
Q ss_pred HHHh
Q 043839 80 VLVA 83 (415)
Q Consensus 80 ~~~~ 83 (415)
....
T Consensus 446 ~~~~ 449 (591)
T 1z6t_A 446 TEKN 449 (591)
T ss_dssp HHHT
T ss_pred Hhhh
Confidence 8773
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=0.0002 Score=68.53 Aligned_cols=263 Identities=9% Similarity=0.009 Sum_probs=142.7
Q ss_pred ceeEEEEEeCCCCCccCCC-C--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCc
Q 043839 101 NVKRCFILKDLTEFFPLEH-S--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLK 176 (415)
Q Consensus 101 ~~r~l~l~~~~~~~~~~~~-~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~ 176 (415)
.++.+.+. +.-.. +... . +.+|+++.+..+..... ..+-...|..+..|+.+.+..+ ++.++ ..+..+.+|+
T Consensus 65 ~L~sI~iP-~svt~-Ig~~AF~~C~~L~~i~~~~n~p~~l-~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIP-DTVTE-IGSNAFYNCTSLKRVTIQDNKPSCV-KKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEEC-TTCCE-ECTTTTTTCTTCCEEEEGGGCCCCC-CEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEEC-CCeeE-EhHHHhhCCccCceEeecCCCCCee-eEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 46777776 54333 3332 2 78899998865432110 2333455777777776666543 33222 2345667777
Q ss_pred eEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEeccc--
Q 043839 177 YLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDL-- 246 (415)
Q Consensus 177 ~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~-- 246 (415)
.+.+.. ..+..+.+|+.+.+. ... ..+....-...+|+.+.+.... .-....+..+.++.........
T Consensus 141 ~i~lp~~~~~I~~~~F~~c~~L~~i~~~-~~~-~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 141 TVTIPEGVTSVADGMFSYCYSLHTVTLP-DSV-TAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECC-TTC-CEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccccceeeeecccceeccccccccccc-cee-eEeccccccccceeEEEECCcccccccchhhhccccceecccccccc
Confidence 777755 445566777777665 221 1121111122345554443322 1111122333333333222110
Q ss_pred --------------------------------CcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCC
Q 043839 247 --------------------------------SYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPT 290 (415)
Q Consensus 247 --------------------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~ 290 (415)
......-...+..+.+|+.+.+.. .+ ++ .+..+ ++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~--------~~~~I~~~aF~~c-~~ 289 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPD--------SVVSIGTGAFMNC-PA 289 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCT--------TCCEECTTTTTTC-TT
T ss_pred cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccc--------ccceecCcccccc-cc
Confidence 001111123455667777777654 11 33 55677 88
Q ss_pred ceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceE-EcCCCccCccEEEEec
Q 043839 291 LTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPKLESLILNP 360 (415)
Q Consensus 291 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~ 360 (415)
|+.+.+... ++......+..|.+|+.+.+.. ..++.+|+.+.|-. .++.+. ..+.+|++|+.+++.+
T Consensus 290 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 999888643 3333445788899999999865 45677899999864 466665 4578999999999988
Q ss_pred CcccCCChhhhcCCCCCCeEEEec
Q 043839 361 CAYLRKLPEELWCIKNLCKLELHW 384 (415)
Q Consensus 361 c~~~~~lp~~l~~l~~L~~L~l~~ 384 (415)
+... ...+..+.+|+.+.+..
T Consensus 367 ~~~~---~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 367 SRSQ---WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CHHH---HHTCBCCCCC-------
T ss_pred ceee---hhhhhccCCCCEEEeCC
Confidence 7532 24566788898888764
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=2.3e-06 Score=72.89 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=25.0
Q ss_pred chHHHhccCCcccEEEcCCc-ccc-----cCcccccCccCCceEecCc
Q 043839 141 DCENFCKKFKHLRVLNLGSA-VLD-----LYPPGLENLFHLKYLKLIT 182 (415)
Q Consensus 141 ~~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~ 182 (415)
.+...+...+.|++|+|++| .+. .+...+...++|++|+|++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 74 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG 74 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC
Confidence 34556777888888888887 665 2333334444555555544
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.83 E-value=0.00054 Score=64.99 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=61.8
Q ss_pred CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceE-EcCCCccC
Q 043839 283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPK 352 (415)
Q Consensus 283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~ 352 (415)
.+..+ ..|+.+.+..+ ++......+..+.+|+.+.+.. ..++++|+.+.+.++ .++.++ ..+.+|++
T Consensus 235 ~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 235 AFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTT
T ss_pred cccCC-ccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccccccc-ccceehhhhhcCCCC
Confidence 44556 77777777654 2223344566777777777754 445677888887654 466665 34677888
Q ss_pred ccEEEEecCcccCCCh-hhhcCCCCCCeEEEe
Q 043839 353 LESLILNPCAYLRKLP-EELWCIKNLCKLELH 383 (415)
Q Consensus 353 L~~L~l~~c~~~~~lp-~~l~~l~~L~~L~l~ 383 (415)
|+.+.+... +..++ ..+.+|++|+.+.+.
T Consensus 312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 888888543 33343 457778888888774
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=1.1e-05 Score=67.49 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=35.0
Q ss_pred cccEEEeccCCCcc-ceEEcCCCccCccEEEEecCcccCCC-hhhhcCC----CCCCeEEEecCCh
Q 043839 328 LLKILHLKSMLWLE-EWTMGAGSMPKLESLILNPCAYLRKL-PEELWCI----KNLCKLELHWPQP 387 (415)
Q Consensus 328 ~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~~~~l-p~~l~~l----~~L~~L~l~~c~~ 387 (415)
+|+.|++++|. ++ .-...+..+++|+.|++++|..+++- -..+..+ ++|++|+|++|+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 46777777775 33 22233567777777787777755421 1223332 3577777777774
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=2.6e-05 Score=66.27 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=71.7
Q ss_pred CCceeEEEeecC-CCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEecCcccccccccCcEEEecC
Q 043839 121 DMYLQSFLNHSS-ESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGS 198 (415)
Q Consensus 121 ~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~ 198 (415)
.+.+++|.+.++ .........+...+...++|++|+|++|.+. .-...++ ..+...++|++|++++
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~------------~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA------------EMLKVNNTLKSLNVES 102 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH------------HHHHHCSSCCEEECCS
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH------------HHHHhCCCcCEEECcC
Confidence 678999999887 6643122334566788899999999999986 2222222 2223344555555654
Q ss_pred CCCCCC----CCCcccCccccceecc--ccCC------CCCccccCCCCCCCeEEEeccc
Q 043839 199 ITMPSP----PNNYSSSLKDLIFISA--VHPS------SCTPDILGRLPNVQTLRISGDL 246 (415)
Q Consensus 199 ~~~~~~----~p~~i~~l~~L~~L~l--~~~~------~~~~~~l~~l~~L~~L~l~~~~ 246 (415)
|.+... +...+...++|++|++ .++. ..+...+...++|++|++++|.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 544332 3344555667777777 5555 2244556677889999998883
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.30 E-value=0.00015 Score=65.08 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=45.8
Q ss_pred hccCCcccEEEcCCcccccCc---ccccCccCCceEecCc------ccccccc--cCcEEEecCCCCCCCCCC-------
Q 043839 146 CKKFKHLRVLNLGSAVLDLYP---PGLENLFHLKYLKLIT------PLLKLMQ--KLMHLNFGSITMPSPPNN------- 207 (415)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~------~~i~~l~--~L~~L~l~~~~~~~~~p~------- 207 (415)
..++++|++|+|++|.++.++ ..+..+++|++|+|++ ..+..+. +|++|++++|.+...+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 367899999999999988544 4555677777777776 2333333 566666665554444432
Q ss_pred cccCccccceec
Q 043839 208 YSSSLKDLIFIS 219 (415)
Q Consensus 208 ~i~~l~~L~~L~ 219 (415)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 134455555554
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.15 E-value=0.00013 Score=65.50 Aligned_cols=80 Identities=30% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCceEEEEEccccCC--CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCcc--CccEEEEecCccc
Q 043839 289 PTLTQLSLSNTKLME--DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMP--KLESLILNPCAYL 364 (415)
Q Consensus 289 ~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~--~L~~L~l~~c~~~ 364 (415)
++|+.|+|++|.+++ .++..++.+++ |+.|+|++| .++.+ ..+..+. +|+.|++++|+..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~--------------L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPN--------------LKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTT--------------CCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCC--------------CCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 666666666666644 22233334444 444444555 34433 2233333 7888888888876
Q ss_pred CCCh-------hhhcCCCCCCeEEEec
Q 043839 365 RKLP-------EELWCIKNLCKLELHW 384 (415)
Q Consensus 365 ~~lp-------~~l~~l~~L~~L~l~~ 384 (415)
+.+| ..+..+|+|+.||-..
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred cccCcchhHHHHHHHHCcccCeECCcC
Confidence 6554 2356678887776443
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.66 E-value=0.053 Score=50.99 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=27.3
Q ss_pred CCCceeEEEEEeCCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCc
Q 043839 98 SLANVKRCFILKDLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSA 160 (415)
Q Consensus 98 ~~~~~r~l~l~~~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 160 (415)
....++.+.+. +.-.. +.... -..+.++.+...- ..+....|..+ +|+.+.+.++
T Consensus 67 ~C~~L~~I~lp-~~v~~-Ig~~aF~~c~l~~i~~~~~l-----~~I~~~aF~~~-~L~~i~lp~~ 123 (379)
T 4h09_A 67 SCYNMTKVTVA-STVTS-IGDGAFADTKLQSYTGMERV-----KKFGDYVFQGT-DLDDFEFPGA 123 (379)
T ss_dssp TCTTCCEEEEC-TTCCE-ECTTTTTTCCCCEEEECTTC-----CEECTTTTTTC-CCSEEECCTT
T ss_pred CCCCCCEEEeC-CcceE-echhhhcCCCCceEECCcee-----eEeccceeccC-CcccccCCCc
Confidence 34566777776 44222 33322 2256666554332 22233345443 6788877654
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.52 E-value=0.024 Score=48.11 Aligned_cols=113 Identities=7% Similarity=-0.011 Sum_probs=52.9
Q ss_pred hHHHhccCCcccEEEcCCc-ccc-----cCcccccCccCCceEecCcccccccccCcEEEecCCCCCCC----CCCcccC
Q 043839 142 CENFCKKFKHLRVLNLGSA-VLD-----LYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSP----PNNYSSS 211 (415)
Q Consensus 142 ~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~ 211 (415)
+...+.+-+.|+.|+|+++ .+. .+-..+..-+.|+.|+|++ |.+... +-..+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~----------------n~igd~ga~alA~aL~~ 96 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN----------------TAISDSEARGLIELIET 96 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT----------------SCCBHHHHTTHHHHHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC----------------CCCChHHHHHHHHHHhc
Confidence 3445666677888888775 554 1222233333344444433 333211 1111222
Q ss_pred ccccceeccccCC------CCCccccCCCCCCCeEEEecccC-cch----hcHHHhhhccCCCcEEEeec
Q 043839 212 LKDLIFISAVHPS------SCTPDILGRLPNVQTLRISGDLS-YHH----SGVSKSLCELHKLECLKLVN 270 (415)
Q Consensus 212 l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~~-~~~----~~~~~~l~~l~~L~~L~l~~ 270 (415)
-+.|++|++.++. ..+...+..-+.|+.|+++++.. ... ..+...+..-+.|+.|++++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 3344444444444 23344455555577777764321 111 23445555556666666654
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.51 E-value=0.063 Score=45.48 Aligned_cols=15 Identities=0% Similarity=0.149 Sum_probs=7.0
Q ss_pred cCCCCCCCeEEEecc
Q 043839 231 LGRLPNVQTLRISGD 245 (415)
Q Consensus 231 l~~l~~L~~L~l~~~ 245 (415)
+..-+.|+.|++++|
T Consensus 66 L~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 66 ACNSKHIEKFSLANT 80 (197)
T ss_dssp HTTCSCCCEEECTTS
T ss_pred HhhCCCcCEEEccCC
Confidence 333444555555444
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.99 E-value=0.62 Score=36.37 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=6.6
Q ss_pred EEEcCCcccc--cCcc
Q 043839 154 VLNLGSAVLD--LYPP 167 (415)
Q Consensus 154 ~L~l~~~~~~--~lp~ 167 (415)
+++.++..++ .+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~ 27 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT 27 (130)
T ss_dssp EEECCSSCCCTTTSCS
T ss_pred EEEeCCCCCccccCCC
Confidence 4444444444 4443
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.70 E-value=0.4 Score=37.52 Aligned_cols=35 Identities=34% Similarity=0.487 Sum_probs=23.0
Q ss_pred CCCCceEEEEEccccCCCCchhhcCCCCCCeEeec
Q 043839 287 FPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK 321 (415)
Q Consensus 287 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 321 (415)
+|++|++|+|++|.++......+..+++|+.|+|.
T Consensus 29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred CCcCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence 44678888888888765555556666666555554
No 169
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.76 E-value=20 Score=20.99 Aligned_cols=9 Identities=0% Similarity=0.364 Sum_probs=7.5
Q ss_pred ccCCCCcee
Q 043839 33 CVYRPSIEI 41 (415)
Q Consensus 33 ~~fp~~~~i 41 (415)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 689999886
Done!