Your job contains 1 sequence.
>043842
MRIPGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCR
ATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTP
WGKPCKSGN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043842
(129 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006316 - symbol:AT2G44065 species:3702 "Ara... 323 4.4e-29 1
UNIPROTKB|P0C8K6 - symbol:RPL2 "60S ribosomal protein L2,... 303 1.6e-26 1
UNIPROTKB|P92812 - symbol:RPL2 "60S ribosomal protein L2,... 303 1.6e-26 1
UNIPROTKB|Q2F969 - symbol:RPL2 "60S ribosomal protein L2,... 303 1.6e-26 1
TIGR_CMR|BA_0113 - symbol:BA_0113 "ribosomal protein L2" ... 206 1.1e-16 1
TIGR_CMR|CBU_0241 - symbol:CBU_0241 "ribosomal protein L2... 205 1.4e-16 1
TIGR_CMR|APH_0283 - symbol:APH_0283 "ribosomal protein L2... 200 4.7e-16 1
TIGR_CMR|ECH_0412 - symbol:ECH_0412 "ribosomal protein L2... 199 6.0e-16 1
TIGR_CMR|CPS_0870 - symbol:CPS_0870 "ribosomal protein L2... 198 7.7e-16 1
TIGR_CMR|SO_0234 - symbol:SO_0234 "ribosomal protein L2" ... 198 7.7e-16 1
TIGR_CMR|NSE_0269 - symbol:NSE_0269 "ribosomal protein L2... 197 9.8e-16 1
TIGR_CMR|GSU_2854 - symbol:GSU_2854 "ribosomal protein L2... 190 5.4e-15 1
TIGR_CMR|CHY_2306 - symbol:CHY_2306 "ribosomal protein L2... 188 8.8e-15 1
UNIPROTKB|Q9AMK8 - symbol:rplB "50S ribosomal protein L2"... 187 1.1e-14 1
UNIPROTKB|P95052 - symbol:rplB "50S ribosomal protein L2"... 185 1.8e-14 1
UNIPROTKB|Q9L0D7 - symbol:rplB "50S ribosomal protein L2"... 183 3.0e-14 1
UNIPROTKB|P60422 - symbol:rplB species:83333 "Escherichia... 182 3.8e-14 1
ASPGD|ASPL0000011317 - symbol:AN3649 species:162425 "Emer... 186 6.6e-14 1
TIGR_CMR|SPO_0484 - symbol:SPO_0484 "ribosomal protein L2... 179 8.8e-14 1
SGD|S000000776 - symbol:RML2 "Mitochondrial ribosomal pro... 184 1.0e-13 1
UNIPROTKB|Q9KNY7 - symbol:rplB "50S ribosomal protein L2"... 178 1.0e-13 1
TIGR_CMR|VC_2593 - symbol:VC_2593 "ribosomal protein L2" ... 178 1.0e-13 1
UNIPROTKB|P0C495 - symbol:rpl2-A "50S ribosomal protein L... 173 3.9e-13 1
UNIPROTKB|P0C496 - symbol:rpl2-A "50S ribosomal protein L... 173 3.9e-13 1
UNIPROTKB|P0C497 - symbol:rpl2-A "50S ribosomal protein L... 173 3.9e-13 1
UNIPROTKB|Q6EN83 - symbol:rpl2-A "50S ribosomal protein L... 173 3.9e-13 1
POMBASE|SPCC16C4.15 - symbol:rml2 "mitochondrial ribosoma... 173 1.3e-12 1
TIGR_CMR|CJE_1872 - symbol:CJE_1872 "ribosomal protein L2... 162 8.4e-12 1
TIGR_CMR|DET_0477 - symbol:DET_0477 "ribosomal protein L2... 161 1.1e-11 1
GENEDB_PFALCIPARUM|PF11_0337 - symbol:PF11_0337 "50S ribo... 154 1.3e-10 1
UNIPROTKB|Q8II37 - symbol:PF11_0337 "Mitochondrial riboso... 154 1.3e-10 1
DICTYBASE|DDB_G0294036 - symbol:mrpl2 "ribosomal protein ... 143 1.1e-09 1
CGD|CAL0005205 - symbol:orf19.5420 species:5476 "Candida ... 146 1.3e-09 1
TAIR|locus:2080968 - symbol:AT3G51190 species:3702 "Arabi... 121 3.2e-07 1
TAIR|locus:2060917 - symbol:EMB2296 "embryo defective 229... 107 1.1e-05 1
TAIR|locus:2122189 - symbol:AT4G36130 species:3702 "Arabi... 105 1.9e-05 1
WB|WBGene00004413 - symbol:rpl-2 species:6239 "Caenorhabd... 101 5.4e-05 1
SGD|S000002104 - symbol:RPL2A "Ribosomal 60S subunit prot... 100 6.6e-05 1
SGD|S000001280 - symbol:RPL2B "Ribosomal 60S subunit prot... 100 6.6e-05 1
GENEDB_PFALCIPARUM|PFE0845c - symbol:PFE0845c "60S riboso... 99 8.9e-05 1
UNIPROTKB|Q8I3T9 - symbol:PFE0845c "60S ribosomal protein... 99 8.9e-05 1
UNIPROTKB|K7GSL7 - symbol:RPL8 "Uncharacterized protein" ... 95 0.00014 1
UNIPROTKB|E9PIZ3 - symbol:RPL8 "60S ribosomal protein L8"... 95 0.00017 1
UNIPROTKB|K7GLA0 - symbol:RPL8 "Uncharacterized protein" ... 95 0.00017 1
UNIPROTKB|Q3T0S6 - symbol:RPL8 "60S ribosomal protein L8"... 95 0.00024 1
UNIPROTKB|E2RIA8 - symbol:RPL8 "Uncharacterized protein" ... 95 0.00024 1
UNIPROTKB|P62917 - symbol:RPL8 "60S ribosomal protein L8"... 95 0.00024 1
UNIPROTKB|F2Z567 - symbol:RPL8 "Uncharacterized protein" ... 95 0.00024 1
MGI|MGI:1350927 - symbol:Rpl8 "ribosomal protein L8" spec... 95 0.00024 1
RGD|619827 - symbol:Rpl8 "ribosomal protein L8" species:1... 95 0.00024 1
ZFIN|ZDB-GENE-040426-1670 - symbol:rpl8 "ribosomal protei... 95 0.00024 1
UNIPROTKB|E1BHY4 - symbol:E1BHY4 "Uncharacterized protein... 94 0.00031 1
UNIPROTKB|F1NIX0 - symbol:RPL8 "Uncharacterized protein" ... 94 0.00034 1
>TAIR|locus:505006316 [details] [associations]
symbol:AT2G44065 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0015934 "large ribosomal subunit"
evidence=IEA;ISS] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR002171 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467 EMBL:CP002685
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AC004005
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 InterPro:IPR014726
PANTHER:PTHR13691 HSSP:P04257 EMBL:AY063831 EMBL:AY091281
IPI:IPI00538697 RefSeq:NP_566007.1 RefSeq:NP_973685.1
UniGene:At.175 ProteinModelPortal:Q8VZU4 SMR:Q8VZU4 IntAct:Q8VZU4
STRING:Q8VZU4 PRIDE:Q8VZU4 EnsemblPlants:AT2G44065.1
EnsemblPlants:AT2G44065.2 GeneID:819012 KEGG:ath:AT2G44065
TAIR:At2g44065 InParanoid:Q8VZU4 OMA:NIEMNPG PhylomeDB:Q8VZU4
ProtClustDB:CLSN2688921 ArrayExpress:Q8VZU4 Genevestigator:Q8VZU4
Uniprot:Q8VZU4
Length = 214
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/131 (52%), Positives = 81/131 (61%)
Query: 1 MRIPGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCR 60
MRI G I H ++ + P + N KEP CL++L G+ K I+ +CR
Sbjct: 68 MRI-GTIIH---NIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCR 123
Query: 61 ATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPH---VERSKSSGNNGRCS 117
ATIGTVSNPSHG KKL KAGQ WLG R VRGVAM P DHPH +SKSSG+ GR S
Sbjct: 124 ATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTS 183
Query: 118 FTPWGKPCKSG 128
+PWGKPCK G
Sbjct: 184 VSPWGKPCKGG 194
>UNIPROTKB|P0C8K6 [details] [associations]
symbol:RPL2 "60S ribosomal protein L2, mitochondrial"
species:4530 "Oryza sativa" [GO:0005739 "mitochondrion"
evidence=IC] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PROSITE:PS00467 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:DQ167807 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
InterPro:IPR014726 PANTHER:PTHR13691 RefSeq:YP_002000581.1
ProteinModelPortal:P0C8K6 PRIDE:P0C8K6 GeneID:6450181
KEGG:osa:6450181 Gramene:P0C8K6 HOGENOM:HOG000150660
Genevestigator:P0C8K6 Uniprot:P0C8K6
Length = 502
Score = 303 (111.7 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 63/119 (52%), Positives = 75/119 (63%)
Query: 11 W-NDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNP 69
W +D+ P + + KEP S+ CLVRL G EK+ID RCRATIG VSNP
Sbjct: 374 WVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNP 432
Query: 70 SHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 128
+HGA+KL KAGQ W GRR +VRGVAM PVDHPH + GR S +PWGKP K+G
Sbjct: 433 NHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPH-GGGEGRTKGGRPSVSPWGKPTKAG 490
>UNIPROTKB|P92812 [details] [associations]
symbol:RPL2 "60S ribosomal protein L2, mitochondrial"
species:39947 "Oryza sativa Japonica Group" [GO:0005739
"mitochondrion" evidence=IC;ISS] InterPro:IPR002171
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PROSITE:PS00467 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:BA000029
GenomeReviews:BA000029_GR EMBL:DQ167400 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
eggNOG:COG0090 RefSeq:YP_002000581.1 GeneID:6450181
KEGG:osa:6450181 EMBL:D78336 PIR:T03019 ProteinModelPortal:P92812
STRING:P92812 PRIDE:P92812 Gramene:P92812 Uniprot:P92812
Length = 502
Score = 303 (111.7 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 63/119 (52%), Positives = 75/119 (63%)
Query: 11 W-NDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNP 69
W +D+ P + + KEP S+ CLVRL G EK+ID RCRATIG VSNP
Sbjct: 374 WVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNP 432
Query: 70 SHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 128
+HGA+KL KAGQ W GRR +VRGVAM PVDHPH + GR S +PWGKP K+G
Sbjct: 433 NHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPH-GGGEGRTKGGRPSVSPWGKPTKAG 490
>UNIPROTKB|Q2F969 [details] [associations]
symbol:RPL2 "60S ribosomal protein L2, mitochondrial"
species:39946 "Oryza sativa Indica Group" [GO:0005739
"mitochondrion" evidence=IC] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PROSITE:PS00467 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:DQ167399 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
InterPro:IPR014726 PANTHER:PTHR13691 RefSeq:YP_514664.1
ProteinModelPortal:Q2F969 PRIDE:Q2F969 GeneID:3950683
Gramene:Q2F969 Uniprot:Q2F969
Length = 502
Score = 303 (111.7 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 63/119 (52%), Positives = 75/119 (63%)
Query: 11 W-NDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNP 69
W +D+ P + + KEP S+ CLVRL G EK+ID RCRATIG VSNP
Sbjct: 374 WVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNP 432
Query: 70 SHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 128
+HGA+KL KAGQ W GRR +VRGVAM PVDHPH + GR S +PWGKP K+G
Sbjct: 433 NHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPH-GGGEGRTKGGRPSVSPWGKPTKAG 490
>TIGR_CMR|BA_0113 [details] [associations]
symbol:BA_0113 "ribosomal protein L2" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0016740 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
OMA:STIHCIE ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5
RefSeq:NP_842681.1 RefSeq:YP_016718.1 RefSeq:YP_026399.1
ProteinModelPortal:Q81VS7 SMR:Q81VS7 DNASU:1087436
EnsemblBacteria:EBBACT00000013045 EnsemblBacteria:EBBACT00000017422
EnsemblBacteria:EBBACT00000020733 GeneID:1087436 GeneID:2819234
GeneID:2850447 KEGG:ban:BA_0113 KEGG:bar:GBAA_0113 KEGG:bat:BAS0113
BioCyc:BANT260799:GJAJ-124-MONOMER
BioCyc:BANT261594:GJ7F-126-MONOMER Uniprot:Q81VS7
Length = 276
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 49/126 (38%), Positives = 66/126 (52%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKP 124
+PWGKP
Sbjct: 248 SPWGKP 253
>TIGR_CMR|CBU_0241 [details] [associations]
symbol:CBU_0241 "ribosomal protein L2" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR002171 InterPro:IPR005880
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0016740 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
OMA:STIHCIE ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5
RefSeq:NP_819285.1 ProteinModelPortal:Q83ES1 SMR:Q83ES1
PRIDE:Q83ES1 GeneID:1208122 KEGG:cbu:CBU_0241 PATRIC:17929175
BioCyc:CBUR227377:GJ7S-247-MONOMER Uniprot:Q83ES1
Length = 275
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 44/86 (51%), Positives = 52/86 (60%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++R+R G + I CRA IG VSN H + L KAG + W GRR VRGVAM PVDH
Sbjct: 171 YAIIRMRSGETRKILAVCRACIGEVSNSEHNLRSLGKAGAKRWRGRRPTVRGVAMNPVDH 230
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKPCK 126
PH K+SG GR +P GKP K
Sbjct: 231 PHGGGEGKTSG--GRHPVSPTGKPTK 254
>TIGR_CMR|APH_0283 [details] [associations]
symbol:APH_0283 "ribosomal protein L2" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
RefSeq:YP_504895.1 ProteinModelPortal:Q2GL56 SMR:Q2GL56
STRING:Q2GL56 GeneID:3930337 KEGG:aph:APH_0283 PATRIC:20949140
OMA:STIHCIE ProtClustDB:PRK09374 BioCyc:APHA212042:GHPM-313-MONOMER
PANTHER:PTHR13691:SF5 Uniprot:Q2GL56
Length = 276
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 46/86 (53%), Positives = 53/86 (61%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++RL G + I CRAT+G VSN + KL KAG+ WLG R VRGVAM PVDH
Sbjct: 171 YVMLRLGSGEVRRILSVCRATVGVVSNLDNRNIKLGKAGRSRWLGLRPKVRGVAMNPVDH 230
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKPCK 126
PH K+SG GR S TPWG P K
Sbjct: 231 PHGGGEGKTSG--GRNSVTPWGVPTK 254
>TIGR_CMR|ECH_0412 [details] [associations]
symbol:ECH_0412 "ribosomal protein L2" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0016740 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5 OMA:LVRQECM
RefSeq:YP_507230.1 ProteinModelPortal:Q2GH53 SMR:Q2GH53
STRING:Q2GH53 GeneID:3927141 KEGG:ech:ECH_0412 PATRIC:20576301
BioCyc:ECHA205920:GJNR-413-MONOMER Uniprot:Q2GH53
Length = 276
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 45/86 (52%), Positives = 52/86 (60%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y L+RL G + + CRATIG VSN + KL KAG+ WLG R VRGVAM P+DH
Sbjct: 171 YVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAGRSRWLGIRPTVRGVAMNPIDH 230
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKPCK 126
PH K+SG GR TPWG P K
Sbjct: 231 PHGGGEGKTSG--GRNPVTPWGVPTK 254
>TIGR_CMR|CPS_0870 [details] [associations]
symbol:CPS_0870 "ribosomal protein L2" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
OMA:STIHCIE ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5
RefSeq:YP_267619.1 ProteinModelPortal:Q487Z6 SMR:Q487Z6
STRING:Q487Z6 PRIDE:Q487Z6 GeneID:3519963 KEGG:cps:CPS_0870
PATRIC:21465033 BioCyc:CPSY167879:GI48-956-MONOMER Uniprot:Q487Z6
Length = 274
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 42/86 (48%), Positives = 50/86 (58%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + I+ CRAT+G + N H + L KAG W G R VRGVAM PVDH
Sbjct: 171 YVTLRLRSGEMRKIESDCRATLGEIGNSEHMLRSLGKAGASRWRGVRPTVRGVAMNPVDH 230
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKPCK 126
PH K+SG GR +PWG P K
Sbjct: 231 PHGGGEGKTSG--GRHPVSPWGVPTK 254
>TIGR_CMR|SO_0234 [details] [associations]
symbol:SO_0234 "ribosomal protein L2" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
OMA:STIHCIE ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5
RefSeq:NP_715874.1 ProteinModelPortal:Q8EK65 SMR:Q8EK65
GeneID:1168117 KEGG:son:SO_0234 PATRIC:23520161 Uniprot:Q8EK65
Length = 274
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 42/86 (48%), Positives = 50/86 (58%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRAT G V N H ++L KAG + W G R VRGVAM PVDH
Sbjct: 171 YATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDH 230
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKPCK 126
PH ++SG GR TPWG P K
Sbjct: 231 PHGGGEGRTSG--GRHPVTPWGVPTK 254
>TIGR_CMR|NSE_0269 [details] [associations]
symbol:NSE_0269 "ribosomal protein L2" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0015934
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 HAMAP:MF_01320_B
InterPro:IPR014726 PANTHER:PTHR13691 TIGRFAMs:TIGR01171
HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886 ProtClustDB:PRK09374
PANTHER:PTHR13691:SF5 OMA:LVRQECM RefSeq:YP_506160.1 STRING:Q2GED6
PRIDE:Q2GED6 GeneID:3931693 KEGG:nse:NSE_0269 PATRIC:22680629
BioCyc:NSEN222891:GHFU-296-MONOMER Uniprot:Q2GED6
Length = 279
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 50/105 (47%), Positives = 58/105 (55%)
Query: 23 ASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQR 82
A SS R + +D Y LV L G +++I C ATIG VSN KL KAG+
Sbjct: 163 AGSSARVIARD------GNYTLVTLPSGEKRLILSTCHATIGAVSNADRKNTKLGKAGRS 216
Query: 83 SWLGRRAVVRGVAMIPVDHPHVE-RSKSSGNNGRCSFTPWGKPCK 126
WLGRR VRGVAM PVDHP K+SG GR +PWG P K
Sbjct: 217 RWLGRRPSVRGVAMNPVDHPMGGGEGKTSG--GRHPVSPWGFPTK 259
>TIGR_CMR|GSU_2854 [details] [associations]
symbol:GSU_2854 "ribosomal protein L2" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR002171
InterPro:IPR005880 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0015934
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 HAMAP:MF_01320_B
InterPro:IPR014726 PANTHER:PTHR13691 TIGRFAMs:TIGR01171
HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886 OMA:STIHCIE
ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5 RefSeq:NP_953897.1
ProteinModelPortal:P60401 SMR:P60401 GeneID:2685862
KEGG:gsu:GSU2854 PATRIC:22028555
BioCyc:GSUL243231:GH27-2828-MONOMER Uniprot:P60401
Length = 274
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 42/87 (48%), Positives = 51/87 (58%)
Query: 41 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
+Y V+L G +++ C ATIG V N H + KAG+ WLGRR VRGVAM PVD
Sbjct: 170 KYAQVKLPSGEVRMVLLDCMATIGQVGNIDHENVSIGKAGRSRWLGRRPKVRGVAMNPVD 229
Query: 101 HPHVE-RSKSSGNNGRCSFTPWGKPCK 126
HPH ++SG GR TPWG P K
Sbjct: 230 HPHGGGEGRTSG--GRHPVTPWGIPTK 254
>TIGR_CMR|CHY_2306 [details] [associations]
symbol:CHY_2306 "ribosomal protein L2" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002171 InterPro:IPR005880
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016740
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
OMA:STIHCIE ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5
RefSeq:YP_361115.1 ProteinModelPortal:Q3A9R9 SMR:Q3A9R9
STRING:Q3A9R9 GeneID:3726958 KEGG:chy:CHY_2306 PATRIC:21277683
BioCyc:CHYD246194:GJCN-2305-MONOMER Uniprot:Q3A9R9
Length = 274
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 40/84 (47%), Positives = 47/84 (55%)
Query: 41 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
RY ++RL G + + CRATIG V N H + KAG+ WLG R VRGV M PVD
Sbjct: 170 RYAILRLPSGEMRKVLLECRATIGQVGNLEHENITIGKAGRARWLGIRPTVRGVVMNPVD 229
Query: 101 HPHVERSKSSGNNGRCSFTPWGKP 124
HPH + GR TPWGKP
Sbjct: 230 HPH-GGGEGRSPIGRHPVTPWGKP 252
>UNIPROTKB|Q9AMK8 [details] [associations]
symbol:rplB "50S ribosomal protein L2" species:42684
"Streptomyces collinus" [GO:0003735 "structural constituent of
ribosome" evidence=IDA] [GO:0006412 "translation" evidence=IDA]
[GO:0015934 "large ribosomal subunit" evidence=IDA]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 PANTHER:PTHR13691:SF5 EMBL:AF324467
ProteinModelPortal:Q9AMK8 SMR:Q9AMK8 Uniprot:Q9AMK8
Length = 278
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 39/84 (46%), Positives = 50/84 (59%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +R+ G ++++ RCRATIG V N KAG++ WLG R VRGV M PVDH
Sbjct: 172 YAHLRMPSGEIRLVNVRCRATIGEVGNAEQSNINWGKAGRKRWLGVRPTVRGVVMNPVDH 231
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKP 124
PH ++SG GR +PWGKP
Sbjct: 232 PHGGGEGRTSG--GRHPVSPWGKP 253
>UNIPROTKB|P95052 [details] [associations]
symbol:rplB "50S ribosomal protein L2" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR002171
InterPro:IPR005880 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 GO:GO:0005886 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
GO:GO:0016740 EMBL:BX842574 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0015934
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 HAMAP:MF_01320_B
InterPro:IPR014726 PANTHER:PTHR13691 TIGRFAMs:TIGR01171
HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886 OMA:STIHCIE
ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5 PIR:C70642
RefSeq:NP_215218.1 RefSeq:NP_335148.1 RefSeq:YP_006514048.1
ProteinModelPortal:P95052 SMR:P95052 PRIDE:P95052
EnsemblBacteria:EBMYCT00000002534 EnsemblBacteria:EBMYCT00000069561
GeneID:13318593 GeneID:888341 GeneID:926021 KEGG:mtc:MT0731
KEGG:mtu:Rv0704 KEGG:mtv:RVBD_0704 PATRIC:18123339
TubercuList:Rv0704 Uniprot:P95052
Length = 280
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 39/84 (46%), Positives = 48/84 (57%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +R+ G + +D RCRAT+G V N KAG+ W G+R VRGV M PVDH
Sbjct: 172 YASLRMPSGEIRRVDVRCRATVGEVGNAEQANINWGKAGRMRWKGKRPSVRGVVMNPVDH 231
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKP 124
PH K+SG GR +PWGKP
Sbjct: 232 PHGGGEGKTSG--GRHPVSPWGKP 253
>UNIPROTKB|Q9L0D7 [details] [associations]
symbol:rplB "50S ribosomal protein L2" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740
GO:GO:0003735 EMBL:AL939121 GenomeReviews:AL645882_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
OMA:STIHCIE ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5
RefSeq:NP_628864.1 ProteinModelPortal:Q9L0D7 SMR:Q9L0D7
PhosSite:P11111097 GeneID:1100146 KEGG:sco:SCO4705 PATRIC:23739232
Uniprot:Q9L0D7
Length = 278
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 40/89 (44%), Positives = 52/89 (58%)
Query: 36 KEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVA 95
KE T + +R+ G +++D RCRAT+G V N KAG++ WLG R VRGV
Sbjct: 168 KEGTMAH--LRMPSGEIRLVDQRCRATVGEVGNAEQSNINWGKAGRKRWLGVRPTVRGVV 225
Query: 96 MIPVDHPHVE-RSKSSGNNGRCSFTPWGK 123
M PVDHPH ++SG GR +PWGK
Sbjct: 226 MNPVDHPHGGGEGRTSG--GRHPVSPWGK 252
>UNIPROTKB|P60422 [details] [associations]
symbol:rplB species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0015934 "large ribosomal
subunit" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR002171
InterPro:IPR005880 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0016740 GO:GO:0008270
EMBL:U18997 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0015934 Gene3D:2.30.30.30
InterPro:IPR014722 PDB:2VHM PDBsum:2VHM PDB:2RDO PDBsum:2RDO
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886
PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF
PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11
PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86
PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC
PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC
PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ
PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4
PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T
PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR
PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ
PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:487D PDB:4GAR PDB:4GAU
PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2
PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T
PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA
PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK
PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN
PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4
PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P
PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT
PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS
PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR
PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T
PDBsum:487D PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
EMBL:X02613 OMA:STIHCIE ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5
PIR:E23129 RefSeq:NP_417776.1 RefSeq:YP_492115.1
ProteinModelPortal:P60422 SMR:P60422 DIP:DIP-35747N IntAct:P60422
MINT:MINT-1322809 PaxDb:P60422 PRIDE:P60422
EnsemblBacteria:EBESCT00000003048 EnsemblBacteria:EBESCT00000015239
GeneID:12932295 GeneID:947820 KEGG:ecj:Y75_p3859 KEGG:eco:b3317
PATRIC:32122066 EchoBASE:EB0858 EcoGene:EG10865
BioCyc:EcoCyc:EG10865-MONOMER BioCyc:ECOL316407:JW3279-MONOMER
EvolutionaryTrace:P60422 Genevestigator:P60422 Uniprot:P60422
Length = 273
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 39/86 (45%), Positives = 46/86 (53%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + ++ CRAT+G V N H + L KAG W G R VRG AM PVDH
Sbjct: 171 YVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDH 230
Query: 102 PHVERSKSSGNN-GRCSFTPWGKPCK 126
PH G N G+ TPWG K
Sbjct: 231 PH---GGGEGRNFGKHPVTPWGVQTK 253
>ASPGD|ASPL0000011317 [details] [associations]
symbol:AN3649 species:162425 "Emericella nidulans"
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006631
"fatty acid metabolic process" evidence=IEA] InterPro:IPR002171
InterPro:IPR005880 InterPro:IPR022666 InterPro:IPR022669
Pfam:PF00181 Pfam:PF03947 GO:GO:0006412 GO:GO:0016740 GO:GO:0003723
EMBL:BN001302 GO:GO:0003735 EMBL:AACD01000061 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0015934 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
HOGENOM:HOG000232982 eggNOG:COG0090 PANTHER:PTHR13691:SF5
OrthoDB:EOG4W9NCQ OMA:QRGNCLP RefSeq:XP_661253.1 STRING:Q5B731
EnsemblFungi:CADANIAT00005086 GeneID:2873068 KEGG:ani:AN3649.2
Uniprot:Q5B731
Length = 405
Score = 186 (70.5 bits), Expect = 6.6e-14, P = 6.6e-14
Identities = 43/94 (45%), Positives = 53/94 (56%)
Query: 36 KEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVA 95
+E T ++ +RL G ++I C ATIG SNP+ +L KAG+ WL R VRG+A
Sbjct: 285 RERTLQHITIRLSSGEVRLIHKDCCATIGVASNPNKKYAQLGKAGRSRWLNIRPTVRGLA 344
Query: 96 MIPVDHPHVE-RSKSSGNNGRCSFTPWGKPCKSG 128
M DHPH R KS GN S PWG P KSG
Sbjct: 345 MNAQDHPHGGGRGKSKGNVDPKS--PWGLPAKSG 376
>TIGR_CMR|SPO_0484 [details] [associations]
symbol:SPO_0484 "ribosomal protein L2" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002171
InterPro:IPR005880 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006412 GO:GO:0016740 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0015934
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 HAMAP:MF_01320_B
InterPro:IPR014726 PANTHER:PTHR13691 TIGRFAMs:TIGR01171
HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886 ProtClustDB:PRK09374
PANTHER:PTHR13691:SF5 OMA:LVRQECM RefSeq:YP_165746.1
ProteinModelPortal:Q5LW59 SMR:Q5LW59 GeneID:3195307
KEGG:sil:SPO0484 PATRIC:23374229 Uniprot:Q5LW59
Length = 280
Score = 179 (68.1 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 38/86 (44%), Positives = 49/86 (56%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RL G +++ C AT+G VSNP + + KAG+ G R VRGVAM P+DH
Sbjct: 171 YAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNYGKAGRMRHKGIRPSVRGVAMNPIDH 230
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKPCK 126
PH ++SG GR TPWGK K
Sbjct: 231 PHGGGEGRTSG--GRTPVTPWGKDTK 254
>SGD|S000000776 [details] [associations]
symbol:RML2 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005762 "mitochondrial large ribosomal subunit" evidence=TAS]
[GO:0002181 "cytoplasmic translation" evidence=TAS] [GO:0003735
"structural constituent of ribosome" evidence=IEA;TAS] [GO:0006631
"fatty acid metabolic process" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PROSITE:PS00467 SGD:S000000776 GO:GO:0016740 GO:GO:0006631
GO:GO:0003723 EMBL:BK006939 GO:GO:0005762 GO:GO:0003735 EMBL:U18779
GO:GO:0002181 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 RefSeq:NP_010867.3 GeneID:856664 KEGG:sce:YEL047C
RefSeq:NP_010864.3 GeneID:856660 KEGG:sce:YEL050C
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 eggNOG:COG0090
PANTHER:PTHR13691:SF5 GeneTree:ENSGT00390000000189
OrthoDB:EOG4W9NCQ PIR:S30827 ProteinModelPortal:P32611 SMR:P32611
DIP:DIP-6812N IntAct:P32611 MINT:MINT-615808 STRING:P32611
PaxDb:P32611 PeptideAtlas:P32611 EnsemblFungi:YEL050C CYGD:YEL050c
OMA:QRGNCLP NextBio:982655 Genevestigator:P32611 GermOnline:YEL050C
Uniprot:P32611
Length = 393
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 49/126 (38%), Positives = 63/126 (50%)
Query: 3 IP-GRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRA 61
IP G I H V P ++ S+ + K P + +VRL+ G + + A
Sbjct: 246 IPIGTIIHNVGITPVGPGKFCRSAGT--YARVLAKLPEKKKAIVRLQSGEHRYVSLEAVA 303
Query: 62 TIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVE-RSKSSGNNGRCSFTP 120
TIG VSN H + L KAG+ WLG R VRGVAM DHPH R KS N + S +P
Sbjct: 304 TIGVVSNIDHQNRSLGKAGRSRWLGIRPTVRGVAMNKCDHPHGGGRGKSKSN--KLSMSP 361
Query: 121 WGKPCK 126
WG+ K
Sbjct: 362 WGQLAK 367
>UNIPROTKB|Q9KNY7 [details] [associations]
symbol:rplB "50S ribosomal protein L2" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR002171 InterPro:IPR005880
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0016740 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 eggNOG:COG0090 KO:K02886 OMA:STIHCIE
ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5 PIR:C82059
RefSeq:NP_232221.1 ProteinModelPortal:Q9KNY7 SMR:Q9KNY7
PRIDE:Q9KNY7 DNASU:2615610 GeneID:2615610 KEGG:vch:VC2593
PATRIC:20084212 Uniprot:Q9KNY7
Length = 274
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 40/86 (46%), Positives = 48/86 (55%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + RATIG V N H ++L KAG W G R VRGV M PVDH
Sbjct: 171 YVTLRLRSGEMRKVLSEGRATIGEVGNAEHMLRELGKAGAARWRGVRPTVRGVVMNPVDH 230
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKPCK 126
PH ++SG GR +PWG P K
Sbjct: 231 PHGGGEGRTSG--GRHPVSPWGVPTK 254
>TIGR_CMR|VC_2593 [details] [associations]
symbol:VC_2593 "ribosomal protein L2" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 eggNOG:COG0090 KO:K02886 OMA:STIHCIE
ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5 PIR:C82059
RefSeq:NP_232221.1 ProteinModelPortal:Q9KNY7 SMR:Q9KNY7
PRIDE:Q9KNY7 DNASU:2615610 GeneID:2615610 KEGG:vch:VC2593
PATRIC:20084212 Uniprot:Q9KNY7
Length = 274
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 40/86 (46%), Positives = 48/86 (55%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + RATIG V N H ++L KAG W G R VRGV M PVDH
Sbjct: 171 YVTLRLRSGEMRKVLSEGRATIGEVGNAEHMLRELGKAGAARWRGVRPTVRGVVMNPVDH 230
Query: 102 PHVE-RSKSSGNNGRCSFTPWGKPCK 126
PH ++SG GR +PWG P K
Sbjct: 231 PHGGGEGRTSG--GRHPVSPWGVPTK 254
>UNIPROTKB|P0C495 [details] [associations]
symbol:rpl2-A "50S ribosomal protein L2, chloroplastic"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0009507 GO:GO:0009536
GO:GO:0016020 GO:GO:0006412 GO:GO:0016740 GO:GO:0003723
EMBL:AY522331 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 ProteinModelPortal:P0C495 SMR:P0C495
PRIDE:P0C495 Gramene:P0C495 HOGENOM:HOG000232982
Genevestigator:P0C495 Uniprot:P0C495
Length = 273
Score = 173 (66.0 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 34/80 (42%), Positives = 44/80 (55%)
Query: 45 VRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHV 104
+RL G +++ C AT+G V N K L +AG + WLG+R VVRGV M PVDHPH
Sbjct: 172 LRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG 231
Query: 105 ERSKSSGNNGRCSFTPWGKP 124
+ + TPWG P
Sbjct: 232 GGEGKAPIGRKKPTTPWGYP 251
>UNIPROTKB|P0C496 [details] [associations]
symbol:rpl2-A "50S ribosomal protein L2, chloroplastic"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR002171 InterPro:IPR005880
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0009507 GO:GO:0009536 GO:GO:0016020 GO:GO:0006412
GO:GO:0016740 GO:GO:0003723 EMBL:AY522329 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0015934
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 HAMAP:MF_01320_B
InterPro:IPR014726 PANTHER:PTHR13691 TIGRFAMs:TIGR01171
RefSeq:YP_654244.1 RefSeq:YP_654261.1 ProteinModelPortal:P0C496
SMR:P0C496 PRIDE:P0C496 GeneID:4126865 GeneID:4126903
Gramene:P0C496 ProtClustDB:CLSC858538 Uniprot:P0C496
Length = 273
Score = 173 (66.0 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 34/80 (42%), Positives = 44/80 (55%)
Query: 45 VRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHV 104
+RL G +++ C AT+G V N K L +AG + WLG+R VVRGV M PVDHPH
Sbjct: 172 LRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG 231
Query: 105 ERSKSSGNNGRCSFTPWGKP 124
+ + TPWG P
Sbjct: 232 GGEGKAPIGRKKPTTPWGYP 251
>UNIPROTKB|P0C497 [details] [associations]
symbol:rpl2-A "50S ribosomal protein L2, chloroplastic"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR002171 InterPro:IPR005880
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0009507 GO:GO:0009536 GO:GO:0016020 GO:GO:0006412
GO:GO:0016740 GO:GO:0003723 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0015934 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 EMBL:M22826
EMBL:L40578 ProtClustDB:CHL00052 Gene3D:4.10.950.10
HAMAP:MF_01320_B InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 PIR:JQ0270 RefSeq:NP_039427.2 RefSeq:NP_039463.2
ProteinModelPortal:P0C497 SMR:P0C497 STRING:P0C497 GeneID:3131421
GeneID:3131424 KEGG:osa:3131421 KEGG:osa:3131424 Gramene:P0C497
eggNOG:COG0090 KO:K02886 Uniprot:P0C497
Length = 273
Score = 173 (66.0 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 34/80 (42%), Positives = 44/80 (55%)
Query: 45 VRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHV 104
+RL G +++ C AT+G V N K L +AG + WLG+R VVRGV M PVDHPH
Sbjct: 172 LRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG 231
Query: 105 ERSKSSGNNGRCSFTPWGKP 124
+ + TPWG P
Sbjct: 232 GGEGKAPIGRKKPTTPWGYP 251
>UNIPROTKB|Q6EN83 [details] [associations]
symbol:rpl2-A "50S ribosomal protein L2, chloroplastic"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0009507 GO:GO:0009536
GO:GO:0006412 GO:GO:0016740 GO:GO:0003723 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AP006728
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 RefSeq:YP_052793.1
RefSeq:YP_052839.1 ProteinModelPortal:Q6EN83 SMR:Q6EN83
GeneID:2885923 GeneID:2885924 Gramene:Q6EN83 ProtClustDB:CHL00052
Gene3D:4.10.950.10 HAMAP:MF_01320_B InterPro:IPR014726
PANTHER:PTHR13691 TIGRFAMs:TIGR01171 Uniprot:Q6EN83
Length = 273
Score = 173 (66.0 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 34/80 (42%), Positives = 44/80 (55%)
Query: 45 VRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHV 104
+RL G +++ C AT+G V N K L +AG + WLG+R VVRGV M PVDHPH
Sbjct: 172 LRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG 231
Query: 105 ERSKSSGNNGRCSFTPWGKP 124
+ + TPWG P
Sbjct: 232 GGEGKAPIGRKKPTTPWGYP 251
>POMBASE|SPCC16C4.15 [details] [associations]
symbol:rml2 "mitochondrial ribosomal protein subunit L2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032543
"mitochondrial translation" evidence=NAS] InterPro:IPR002171
InterPro:IPR005880 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PROSITE:PS00467
PomBase:SPCC16C4.15 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0016740 GO:GO:0003723 GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 InterPro:IPR014726
PANTHER:PTHR13691 TIGRFAMs:TIGR01171 HOGENOM:HOG000232982
eggNOG:COG0090 PANTHER:PTHR13691:SF5 PIR:T41105 RefSeq:NP_587925.2
HSSP:P60422 STRING:Q9Y7P4 EnsemblFungi:SPCC16C4.15.1 GeneID:2539321
OrthoDB:EOG4W9NCQ NextBio:20800486 Uniprot:Q9Y7P4
Length = 362
Score = 173 (66.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 42/89 (47%), Positives = 51/89 (57%)
Query: 41 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
+Y +VRL+ G E+ I ATIG VSN ++L KAG+ WLG R VRG AM P D
Sbjct: 252 KYAIVRLQSGEERKILDTSFATIGVVSNIYWQHRQLGKAGRSRWLGIRPTVRGTAMNPCD 311
Query: 101 HPHVERS-KSSGNNGRCSFTPWGKPCKSG 128
HPH KS GN + S +PWG K G
Sbjct: 312 HPHGGGGGKSIGN--KPSQSPWGVLAKGG 338
>TIGR_CMR|CJE_1872 [details] [associations]
symbol:CJE_1872 "ribosomal protein L2" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR002171
InterPro:IPR005880 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0015934
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 HAMAP:MF_01320_B
InterPro:IPR014726 PANTHER:PTHR13691 TIGRFAMs:TIGR01171
HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886 ProtClustDB:PRK09374
PANTHER:PTHR13691:SF5 RefSeq:YP_179842.1 ProteinModelPortal:Q5HS93
SMR:Q5HS93 STRING:Q5HS93 GeneID:3232499 KEGG:cjr:CJE1872
PATRIC:20045576 OMA:LVRQECM BioCyc:CJEJ195099:GJC0-1911-MONOMER
Uniprot:Q5HS93
Length = 276
Score = 162 (62.1 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 45/126 (35%), Positives = 61/126 (48%)
Query: 3 IP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCR 60
IP G I H ++ ++P + + S Q KE +Y ++RL G + + C
Sbjct: 136 IPVGTIVH---NVELKPGKGGQMIRSAGAYAQLMGKE--EKYVILRLASGEMRQVLAECM 190
Query: 61 ATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTP 120
A+IG V N + KAG+ G R RG AM PVDHPH + N+GR TP
Sbjct: 191 ASIGEVGNEEWANVTIGKAGRNRHRGIRPQTRGSAMNPVDHPH-GGGEGKKNSGRHPVTP 249
Query: 121 WGKPCK 126
WGKP K
Sbjct: 250 WGKPTK 255
>TIGR_CMR|DET_0477 [details] [associations]
symbol:DET_0477 "ribosomal protein L2" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002171 InterPro:IPR005880 InterPro:IPR022666
InterPro:IPR022669 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 GO:GO:0006412 GO:GO:0016740 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0015934
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 Gene3D:4.10.950.10 HAMAP:MF_01320_B
InterPro:IPR014726 PANTHER:PTHR13691 TIGRFAMs:TIGR01171
HOGENOM:HOG000232982 eggNOG:COG0090 KO:K02886 OMA:STIHCIE
ProtClustDB:PRK09374 PANTHER:PTHR13691:SF5 RefSeq:YP_181221.1
ProteinModelPortal:Q3Z978 SMR:Q3Z978 STRING:Q3Z978 GeneID:3230152
KEGG:det:DET0477 PATRIC:21608023 BioCyc:DETH243164:GJNF-477-MONOMER
Uniprot:Q3Z978
Length = 274
Score = 161 (61.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 37/85 (43%), Positives = 45/85 (52%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y LVRL G + + C AT+G + N HG ++ KAG+ LG R VRG AM P +H
Sbjct: 171 YALVRLPSGEMRKVRSDCSATVGQIGNIEHGTLEIGKAGRNRHLGWRPTVRGSAMSPNNH 230
Query: 102 PHV--ERSKSSGNNGRCSFTPWGKP 124
PH E G G TPWGKP
Sbjct: 231 PHGGGECRSPIGMTG--PKTPWGKP 253
>GENEDB_PFALCIPARUM|PF11_0337 [details] [associations]
symbol:PF11_0337 "50S ribosomal protein L2,
putative" species:5833 "Plasmodium falciparum" [GO:0000315
"organellar large ribosomal subunit" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR002171 InterPro:IPR005880
InterPro:IPR022666 InterPro:IPR022669 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 GO:GO:0005739 GO:GO:0006412 GO:GO:0016740
GO:GO:0003723 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AE014186 GO:GO:0015934 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0020011 InterPro:IPR008991 SUPFAM:SSF50104
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 PANTHER:PTHR13691:SF5
HSSP:P04257 RefSeq:XP_001348008.1 ProteinModelPortal:Q8II37
SMR:Q8II37 EnsemblProtists:PF11_0337:mRNA GeneID:810884
KEGG:pfa:PF11_0337 EuPathDB:PlasmoDB:PF3D7_1132700 OMA:NEYATIK
ProtClustDB:PTZ00031 Uniprot:Q8II37
Length = 333
Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 37/90 (41%), Positives = 47/90 (52%)
Query: 40 SRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPV 99
+ Y ++L+ + +C ATIG VSN + L KAG WLG+R VVRGVAM P
Sbjct: 217 NEYATIKLKSTEIRKFPLQCWATIGQVSNLERHMRILGKAGVNRWLGKRPVVRGVAMNPS 276
Query: 100 DHPHVE-RSKSSGNNGRCSFTPWGKPCKSG 128
HPH SK +CS WG C+ G
Sbjct: 277 KHPHGGGTSKKHTKRPKCSL--WGI-CRDG 303
>UNIPROTKB|Q8II37 [details] [associations]
symbol:PF11_0337 "Mitochondrial ribosomal protein L2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005739
"mitochondrion" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR002171 InterPro:IPR005880
InterPro:IPR022666 InterPro:IPR022669 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 GO:GO:0005739 GO:GO:0006412 GO:GO:0016740
GO:GO:0003723 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AE014186 GO:GO:0015934 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0020011 InterPro:IPR008991 SUPFAM:SSF50104
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
TIGRFAMs:TIGR01171 HOGENOM:HOG000232982 PANTHER:PTHR13691:SF5
HSSP:P04257 RefSeq:XP_001348008.1 ProteinModelPortal:Q8II37
SMR:Q8II37 EnsemblProtists:PF11_0337:mRNA GeneID:810884
KEGG:pfa:PF11_0337 EuPathDB:PlasmoDB:PF3D7_1132700 OMA:NEYATIK
ProtClustDB:PTZ00031 Uniprot:Q8II37
Length = 333
Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 37/90 (41%), Positives = 47/90 (52%)
Query: 40 SRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPV 99
+ Y ++L+ + +C ATIG VSN + L KAG WLG+R VVRGVAM P
Sbjct: 217 NEYATIKLKSTEIRKFPLQCWATIGQVSNLERHMRILGKAGVNRWLGKRPVVRGVAMNPS 276
Query: 100 DHPHVE-RSKSSGNNGRCSFTPWGKPCKSG 128
HPH SK +CS WG C+ G
Sbjct: 277 KHPHGGGTSKKHTKRPKCSL--WGI-CRDG 303
>DICTYBASE|DDB_G0294036 [details] [associations]
symbol:mrpl2 "ribosomal protein L2, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR002171 InterPro:IPR005880
InterPro:IPR022666 InterPro:IPR022669 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 dictyBase:DDB_G0294036
GO:GO:0005739 GO:GO:0006412 GO:GO:0016740 GO:GO:0003723
GO:GO:0003735 EMBL:AB000109 GenomeReviews:AB000109_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:D21196
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
InterPro:IPR014726 PANTHER:PTHR13691 TIGRFAMs:TIGR01171
eggNOG:COG0090 PANTHER:PTHR13691:SF5 PIR:T43770 RefSeq:NP_050091.1
HSSP:P04257 ProteinModelPortal:Q23888 STRING:Q23888 GeneID:2193919
KEGG:ddi:DidioMp24 Uniprot:Q23888
Length = 266
Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/73 (45%), Positives = 42/73 (57%)
Query: 36 KEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVA 95
K+ +Y LV+L ++I C ATIGTVSN K+ KA G R +VRG+A
Sbjct: 148 KKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLA 207
Query: 96 MIPVDHPHVERSK 108
M PVDHPH R+K
Sbjct: 208 MNPVDHPHGGRTK 220
>CGD|CAL0005205 [details] [associations]
symbol:orf19.5420 species:5476 "Candida albicans" [GO:0006631
"fatty acid metabolic process" evidence=IEA] InterPro:IPR002171
InterPro:IPR005880 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PROSITE:PS00467
CGD:CAL0005205 GO:GO:0006412 GO:GO:0016740 GO:GO:0003723
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 EMBL:AACQ01000051
EMBL:AACQ01000050 Gene3D:4.10.950.10 InterPro:IPR014726
PANTHER:PTHR13691 TIGRFAMs:TIGR01171 eggNOG:COG0090
PANTHER:PTHR13691:SF5 RefSeq:XP_717698.1 RefSeq:XP_717792.1
STRING:Q5A7P6 GeneID:3640548 GeneID:3640641 KEGG:cal:CaO19.12875
KEGG:cal:CaO19.5420 Uniprot:Q5A7P6
Length = 368
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 40/120 (33%), Positives = 57/120 (47%)
Query: 5 GRITHMWNDLRVQPS-RWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATI 63
G I H ++ ++P R + S + K P +++L G ++ + C AT+
Sbjct: 224 GSIIH---NIGLRPGDRAQLVRSAGTFGKILSKHPEKNRAVIKLSSGEQRYVILDCHATL 280
Query: 64 GTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVE-RSKSSGNNGRCSFTPWG 122
G VSN H KAG+ + G R VRGVAM DHPH R KS N + S + WG
Sbjct: 281 GVVSNKEHQLISWGKAGRSRYRGFRPKVRGVAMNACDHPHGGGRGKSKSN--KVSQSMWG 338
>TAIR|locus:2080968 [details] [associations]
symbol:AT3G51190 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0022626 "cytosolic ribosome"
evidence=IDA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 InterPro:IPR023672
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AL132980 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625 KO:K02938
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
eggNOG:COG0090 HOGENOM:HOG000232983 ProtClustDB:CLSN2683927
EMBL:DQ056619 IPI:IPI00528587 PIR:T45750 RefSeq:NP_190687.2
UniGene:At.53884 ProteinModelPortal:Q4PSL7 SMR:Q4PSL7 STRING:Q4PSL7
PaxDb:Q4PSL7 PRIDE:Q4PSL7 EnsemblPlants:AT3G51190.1 GeneID:824282
KEGG:ath:AT3G51190 GeneFarm:406 TAIR:At3g51190 InParanoid:Q4PSL7
OMA:IACGISA Genevestigator:Q4PSL7 GermOnline:AT3G51190
Uniprot:Q4PSL7
Length = 260
Score = 121 (47.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/71 (42%), Positives = 39/71 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRR---AVVR 92
P S V+L G++K++ CRA IG V+ K L KAG + +R VVR
Sbjct: 142 PESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPLLKAGNAYHKYKAKRNCWPVVR 201
Query: 93 GVAMIPVDHPH 103
GVAM PV+HPH
Sbjct: 202 GVAMNPVEHPH 212
>TAIR|locus:2060917 [details] [associations]
symbol:EMB2296 "embryo defective 2296" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005773 "vacuole" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 InterPro:IPR023672
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0005886 GO:GO:0005774 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 EMBL:AC006201
InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625 KO:K02938
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
eggNOG:COG0090 HOGENOM:HOG000232983 OMA:GRVIRNQ EMBL:X86765
EMBL:AY128314 EMBL:BT001177 IPI:IPI00517953 PIR:C84559
RefSeq:NP_179393.1 UniGene:At.24098 UniGene:At.74928
ProteinModelPortal:P46286 SMR:P46286 IntAct:P46286 STRING:P46286
PaxDb:P46286 PRIDE:P46286 EnsemblPlants:AT2G18020.1 GeneID:816314
KEGG:ath:AT2G18020 GeneFarm:405 TAIR:At2g18020 InParanoid:P46286
PhylomeDB:P46286 ProtClustDB:CLSN2683927 Genevestigator:P46286
GermOnline:AT2G18020 Uniprot:P46286
Length = 258
Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRR---AVVR 92
P S ++L G++K++ CRA IG V+ K + KAG + +R VR
Sbjct: 141 PDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVR 200
Query: 93 GVAMIPVDHPH 103
GVAM PV+HPH
Sbjct: 201 GVAMNPVEHPH 211
>TAIR|locus:2122189 [details] [associations]
symbol:AT4G36130 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0005773 "vacuole" evidence=IDA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 InterPro:IPR023672
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0005886 GO:GO:0005773 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006412 GO:GO:0003723 EMBL:AL161588 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL022141
EMBL:AL022373 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625 KO:K02938
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
eggNOG:COG0090 HOGENOM:HOG000232983 ProtClustDB:CLSN2683927
EMBL:AF361610 EMBL:AF367335 EMBL:AY058221 EMBL:Z25971
IPI:IPI00523186 PIR:T04582 RefSeq:NP_195336.1 UniGene:At.2119
UniGene:At.72399 ProteinModelPortal:Q42064 SMR:Q42064 STRING:Q42064
PaxDb:Q42064 PRIDE:Q42064 EnsemblPlants:AT4G36130.1 GeneID:829770
KEGG:ath:AT4G36130 GeneFarm:407 TAIR:At4g36130 InParanoid:Q42064
OMA:DNDTSRI PhylomeDB:Q42064 Genevestigator:Q42064
GermOnline:AT4G36130 Uniprot:Q42064
Length = 258
Score = 105 (42.0 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 39 TSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VRG 93
TSR ++L G++K++ CRA IG V+ K + KAG + +R VRG
Sbjct: 145 TSR---IKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRG 201
Query: 94 VAMIPVDHPH 103
VAM PV+HPH
Sbjct: 202 VAMNPVEHPH 211
>WB|WBGene00004413 [details] [associations]
symbol:rpl-2 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
InterPro:IPR002171 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 EMBL:Z81453 GO:GO:0006412 GO:GO:0040011 GO:GO:0000003
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 KO:K02938 Gene3D:4.10.950.10
InterPro:IPR014726 PANTHER:PTHR13691 eggNOG:COG0090
GeneTree:ENSGT00390000009907 HOGENOM:HOG000232983 OMA:GRVIRNQ
PIR:T18676 RefSeq:NP_507940.1 ProteinModelPortal:Q9XVF7 SMR:Q9XVF7
DIP:DIP-24785N IntAct:Q9XVF7 MINT:MINT-1062067 STRING:Q9XVF7
PaxDb:Q9XVF7 PRIDE:Q9XVF7 EnsemblMetazoa:B0250.1.1
EnsemblMetazoa:B0250.1.2 GeneID:180343 KEGG:cel:CELE_B0250.1
UCSC:B0250.1.1 CTD:180343 WormBase:B0250.1 InParanoid:Q9XVF7
NextBio:908952 Uniprot:Q9XVF7
Length = 260
Score = 101 (40.6 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ +RL G +KV+ RA IG V+ K L KAG+ + +R VR
Sbjct: 141 PDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVR 200
Query: 93 GVAMIPVDHPH 103
GVAM PV+HPH
Sbjct: 201 GVAMNPVEHPH 211
>SGD|S000002104 [details] [associations]
symbol:RPL2A "Ribosomal 60S subunit protein L2A" species:4932
"Saccharomyces cerevisiae" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0002181 "cytoplasmic translation"
evidence=IDA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR002171
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
SGD:S000002104 EMBL:D50617 EMBL:BK006940 GO:GO:0003735
GO:GO:0002181 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625 EMBL:U05820
RefSeq:NP_116688.3 GeneID:850590 KEGG:sce:YFR031C-A KO:K02938
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691 PDB:1K5Y
PDB:1S1I PDB:3IZS PDB:3O58 PDB:3O5H PDB:3U5E PDB:3U5I PDBsum:1K5Y
PDBsum:1S1I PDBsum:3IZS PDBsum:3O58 PDBsum:3O5H PDBsum:3U5E
PDBsum:3U5I KO:K02905 RefSeq:NP_116690.3 GeneID:850592
KEGG:sce:YFR032C-A EMBL:U17359 PIR:S50243 RefSeq:NP_012246.1
ProteinModelPortal:P0CX45 SMR:P0CX45 EnsemblFungi:YFR031C-A
EnsemblFungi:YIL018W GeneID:854794 KEGG:sce:YIL018W CYGD:YFR031c-a
EvolutionaryTrace:P0CX45 NextBio:966437 ArrayExpress:P0CX45
GermOnline:YFR031C-A Uniprot:P0CX45
Length = 254
Score = 100 (40.3 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 29/71 (40%), Positives = 35/71 (49%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ---RSWLGRRA--VVR 92
P VRL G +KVI R IG ++ K L KAG+ + L R + R
Sbjct: 141 PDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTR 200
Query: 93 GVAMIPVDHPH 103
GVAM PVDHPH
Sbjct: 201 GVAMNPVDHPH 211
>SGD|S000001280 [details] [associations]
symbol:RPL2B "Ribosomal 60S subunit protein L2B" species:4932
"Saccharomyces cerevisiae" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0002181 "cytoplasmic translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA]
InterPro:IPR002171 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 SGD:S000001280 EMBL:BK006942 GO:GO:0003735
GO:GO:0002181 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 PDB:4B6A PDBsum:4B6A EMBL:Z46881 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
RefSeq:NP_116688.3 GeneID:850590 KEGG:sce:YFR031C-A KO:K02938
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691 KO:K02905
RefSeq:NP_116690.3 GeneID:850592 KEGG:sce:YFR032C-A PIR:S50243
RefSeq:NP_012246.1 EnsemblFungi:YFR031C-A EnsemblFungi:YIL018W
GeneID:854794 KEGG:sce:YIL018W NextBio:966437 EMBL:U17360
ProteinModelPortal:P0CX46 SMR:P0CX46 CYGD:YIL018w
GeneTree:ENSGT00390000009907 ArrayExpress:P0CX46 GermOnline:YIL018W
Uniprot:P0CX46
Length = 254
Score = 100 (40.3 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 29/71 (40%), Positives = 35/71 (49%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ---RSWLGRRA--VVR 92
P VRL G +KVI R IG ++ K L KAG+ + L R + R
Sbjct: 141 PDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTR 200
Query: 93 GVAMIPVDHPH 103
GVAM PVDHPH
Sbjct: 201 GVAMNPVDHPH 211
>GENEDB_PFALCIPARUM|PFE0845c [details] [associations]
symbol:PFE0845c "60S ribosomal subunit protein
L8, putative" species:5833 "Plasmodium falciparum" [GO:0015934
"large ribosomal subunit" evidence=ISS] InterPro:IPR002171
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844504 GO:GO:0015934 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 KO:K02938
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
HOGENOM:HOG000232983 OMA:GRVIRNQ ProtClustDB:PTZ00180 HSSP:P04257
RefSeq:XP_001351726.1 ProteinModelPortal:Q8I3T9 SMR:Q8I3T9
IntAct:Q8I3T9 MINT:MINT-1653669 PRIDE:Q8I3T9
EnsemblProtists:PFE0845c:mRNA GeneID:812984 KEGG:pfa:PFE0845c
EuPathDB:PlasmoDB:PF3D7_0516900 Uniprot:Q8I3T9
Length = 260
Score = 99 (39.9 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 45 VRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAG--QRSWLGRRAV---VRGVAMIPV 99
VRL G +K ID + RA +G V K + KAG + +R VRGVAM PV
Sbjct: 148 VRLPSGAKKTIDAKARAMVGVVGAGGRIDKPILKAGVAHHKYRVKRNCWPKVRGVAMNPV 207
Query: 100 DHPH 103
+HPH
Sbjct: 208 EHPH 211
>UNIPROTKB|Q8I3T9 [details] [associations]
symbol:PFE0845c "60S ribosomal protein L8, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0015934 "large
ribosomal subunit" evidence=ISS] InterPro:IPR002171
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844504 GO:GO:0015934 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 KO:K02938
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
HOGENOM:HOG000232983 OMA:GRVIRNQ ProtClustDB:PTZ00180 HSSP:P04257
RefSeq:XP_001351726.1 ProteinModelPortal:Q8I3T9 SMR:Q8I3T9
IntAct:Q8I3T9 MINT:MINT-1653669 PRIDE:Q8I3T9
EnsemblProtists:PFE0845c:mRNA GeneID:812984 KEGG:pfa:PFE0845c
EuPathDB:PlasmoDB:PF3D7_0516900 Uniprot:Q8I3T9
Length = 260
Score = 99 (39.9 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 45 VRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAG--QRSWLGRRAV---VRGVAMIPV 99
VRL G +K ID + RA +G V K + KAG + +R VRGVAM PV
Sbjct: 148 VRLPSGAKKTIDAKARAMVGVVGAGGRIDKPILKAGVAHHKYRVKRNCWPKVRGVAMNPV 207
Query: 100 DHPH 103
+HPH
Sbjct: 208 EHPH 211
>UNIPROTKB|K7GSL7 [details] [associations]
symbol:RPL8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002171 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF03947 PROSITE:PS00467 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
GeneTree:ENSGT00390000009907 EMBL:CU468612
Ensembl:ENSSSCT00000035903 Uniprot:K7GSL7
Length = 202
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 86 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 145
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 146 GVAMNPVEHP 155
>UNIPROTKB|E9PIZ3 [details] [associations]
symbol:RPL8 "60S ribosomal protein L8" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002171 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 Gene3D:4.10.950.10
InterPro:IPR014726 PANTHER:PTHR13691 ChiTaRS:RPL8 HGNC:HGNC:10368
EMBL:AF235103 IPI:IPI00975850 ProteinModelPortal:E9PIZ3 SMR:E9PIZ3
Ensembl:ENST00000534813 ArrayExpress:E9PIZ3 Bgee:E9PIZ3
Uniprot:E9PIZ3
Length = 221
Score = 95 (38.5 bits), Expect = 0.00017, P = 0.00017
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 105 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 164
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 165 GVAMNPVEHP 174
>UNIPROTKB|K7GLA0 [details] [associations]
symbol:RPL8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002171 InterPro:IPR022669
InterPro:IPR022671 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
GeneTree:ENSGT00390000009907 EMBL:CU468612
Ensembl:ENSSSCT00000033850 Uniprot:K7GLA0
Length = 221
Score = 95 (38.5 bits), Expect = 0.00017, P = 0.00017
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 105 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 164
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 165 GVAMNPVEHP 174
>UNIPROTKB|Q3T0S6 [details] [associations]
symbol:RPL8 "60S ribosomal protein L8" species:9913 "Bos
taurus" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 InterPro:IPR023672
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0015934 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 KO:K02938
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
eggNOG:COG0090 GeneTree:ENSGT00390000009907 HOGENOM:HOG000232983
OMA:GRVIRNQ EMBL:BC102277 EMBL:BC151407 IPI:IPI00698077
RefSeq:NP_001029797.1 UniGene:Bt.48839 ProteinModelPortal:Q3T0S6
SMR:Q3T0S6 STRING:Q3T0S6 PRIDE:Q3T0S6 Ensembl:ENSBTAT00000037367
GeneID:535056 KEGG:bta:535056 CTD:6132 HOVERGEN:HBG079431
InParanoid:Q3T0S6 OrthoDB:EOG4XKV7P NextBio:20876611 Uniprot:Q3T0S6
Length = 257
Score = 95 (38.5 bits), Expect = 0.00024, P = 0.00024
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 141 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 200
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 201 GVAMNPVEHP 210
>UNIPROTKB|E2RIA8 [details] [associations]
symbol:RPL8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 InterPro:IPR023672
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
KO:K02938 Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
GeneTree:ENSGT00390000009907 OMA:GRVIRNQ CTD:6132 EMBL:AAEX03008983
RefSeq:XP_858496.1 ProteinModelPortal:E2RIA8 SMR:E2RIA8
PRIDE:E2RIA8 Ensembl:ENSCAFT00000002627 GeneID:475130
KEGG:cfa:475130 NextBio:20851021 HAMAP:MF_01320_A Uniprot:E2RIA8
Length = 257
Score = 95 (38.5 bits), Expect = 0.00024, P = 0.00024
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 141 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 200
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 201 GVAMNPVEHP 210
>UNIPROTKB|P62917 [details] [associations]
symbol:RPL8 "60S ribosomal protein L8" species:9606 "Homo
sapiens" [GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412
"translation" evidence=NAS;TAS] [GO:0003735 "structural constituent
of ribosome" evidence=NAS] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0006414 "translational elongation" evidence=TAS] [GO:0006415
"translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR002171 InterPro:IPR022666 InterPro:IPR022669
InterPro:IPR022671 InterPro:IPR023672 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 Reactome:REACT_116125
GO:GO:0000184 GO:GO:0006413 GO:GO:0003723 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CH471162
GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0006415
GO:GO:0006414 InterPro:IPR008991 SUPFAM:SSF50104
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625 GO:GO:0019083
KO:K02938 Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
eggNOG:COG0090 OMA:GRVIRNQ CTD:6132 HOVERGEN:HBG079431
OrthoDB:EOG4XKV7P ChiTaRS:RPL8 EMBL:Z28407 EMBL:AB061821
EMBL:BT007379 EMBL:CR457046 EMBL:AK289459 EMBL:BC000047
EMBL:BC000077 EMBL:BC012197 EMBL:BC013104 EMBL:BC093064
EMBL:AB007168 IPI:IPI00012772 PIR:JN0923 RefSeq:NP_000964.1
RefSeq:NP_150644.1 UniGene:Hs.178551 ProteinModelPortal:P62917
SMR:P62917 IntAct:P62917 MINT:MINT-1135693 STRING:P62917
PhosphoSite:P62917 DMDM:51702823 PaxDb:P62917 PRIDE:P62917
DNASU:6132 Ensembl:ENST00000262584 Ensembl:ENST00000394920
GeneID:6132 KEGG:hsa:6132 UCSC:uc003zeb.3 GeneCards:GC08M145985
HGNC:HGNC:10368 MIM:604177 neXtProt:NX_P62917 PharmGKB:PA34768
InParanoid:P62917 PhylomeDB:P62917 GenomeRNAi:6132 NextBio:23815
ArrayExpress:P62917 Bgee:P62917 CleanEx:HS_RPL8
Genevestigator:P62917 GermOnline:ENSG00000161016 Uniprot:P62917
Length = 257
Score = 95 (38.5 bits), Expect = 0.00024, P = 0.00024
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 141 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 200
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 201 GVAMNPVEHP 210
>UNIPROTKB|F2Z567 [details] [associations]
symbol:RPL8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 InterPro:IPR023672
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
KO:K02938 Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
GeneTree:ENSGT00390000009907 OMA:GRVIRNQ CTD:6132 HAMAP:MF_01320_A
EMBL:CU468612 RefSeq:XP_001924964.1 UniGene:Ssc.53780
ProteinModelPortal:F2Z567 SMR:F2Z567 PRIDE:F2Z567
Ensembl:ENSSSCT00000031015 GeneID:100154456 KEGG:ssc:100154456
Uniprot:F2Z567
Length = 257
Score = 95 (38.5 bits), Expect = 0.00024, P = 0.00024
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 141 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 200
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 201 GVAMNPVEHP 210
>MGI|MGI:1350927 [details] [associations]
symbol:Rpl8 "ribosomal protein L8" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR002171
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
InterPro:IPR023672 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 MGI:MGI:1350927 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 GO:GO:0022625 KO:K02938 Gene3D:4.10.950.10
InterPro:IPR014726 PANTHER:PTHR13691 eggNOG:COG0090
GeneTree:ENSGT00390000009907 HOGENOM:HOG000232983 OMA:GRVIRNQ
CTD:6132 HOVERGEN:HBG079431 OrthoDB:EOG4XKV7P ChiTaRS:RPL8
EMBL:U67771 EMBL:AK088263 EMBL:AK131970 EMBL:AK145498 EMBL:AK167775
EMBL:AK168769 EMBL:BC043017 IPI:IPI00137787 RefSeq:NP_036183.1
UniGene:Mm.30066 ProteinModelPortal:P62918 SMR:P62918 STRING:P62918
PaxDb:P62918 PRIDE:P62918 Ensembl:ENSMUST00000004072 GeneID:26961
KEGG:mmu:26961 UCSC:uc007wmt.2 InParanoid:P62918 NextBio:304899
Bgee:P62918 CleanEx:MM_RPL8 Genevestigator:P62918
GermOnline:ENSMUSG00000003970 Uniprot:P62918
Length = 257
Score = 95 (38.5 bits), Expect = 0.00024, P = 0.00024
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 141 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 200
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 201 GVAMNPVEHP 210
>RGD|619827 [details] [associations]
symbol:Rpl8 "ribosomal protein L8" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934
"large ribosomal subunit" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISO] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 InterPro:IPR023672
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
RGD:619827 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
KO:K02938 Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
eggNOG:COG0090 GeneTree:ENSGT00390000009907 HOGENOM:HOG000232983
OMA:GRVIRNQ CTD:6132 HOVERGEN:HBG079431 OrthoDB:EOG4XKV7P
EMBL:X62145 EMBL:BC126063 IPI:IPI00215208 PIR:JU0177
RefSeq:NP_001030088.2 RefSeq:XP_002729189.1 RefSeq:XP_003750416.1
UniGene:Rn.127774 UniGene:Rn.9810 ProteinModelPortal:P62919
SMR:P62919 IntAct:P62919 STRING:P62919 PRIDE:P62919
Ensembl:ENSRNOT00000005960 Ensembl:ENSRNOT00000041984
GeneID:100360117 GeneID:100910370 GeneID:26962 KEGG:rno:100360117
KEGG:rno:100910370 KEGG:rno:26962 UCSC:RGD:619827 InParanoid:P62919
NextBio:608033 Genevestigator:P62919 GermOnline:ENSRNOG00000004497
GermOnline:ENSRNOG00000032635 Uniprot:P62919
Length = 257
Score = 95 (38.5 bits), Expect = 0.00024, P = 0.00024
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 141 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 200
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 201 GVAMNPVEHP 210
>ZFIN|ZDB-GENE-040426-1670 [details] [associations]
symbol:rpl8 "ribosomal protein L8" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR002171
InterPro:IPR022666 InterPro:IPR022669 InterPro:IPR022671
InterPro:IPR023672 Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158
PROSITE:PS00467 ZFIN:ZDB-GENE-040426-1670 GO:GO:0006412
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 GO:GO:0015934 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 KO:K02938 Gene3D:4.10.950.10
InterPro:IPR014726 PANTHER:PTHR13691 eggNOG:COG0090
GeneTree:ENSGT00390000009907 HOGENOM:HOG000232983 OMA:GRVIRNQ
CTD:6132 HOVERGEN:HBG079431 OrthoDB:EOG4XKV7P EMBL:BC059473
EMBL:BC065432 IPI:IPI00505170 RefSeq:NP_957007.1 UniGene:Dr.4091
ProteinModelPortal:Q6P0V6 SMR:Q6P0V6 STRING:Q6P0V6 PRIDE:Q6P0V6
Ensembl:ENSDART00000006948 Ensembl:ENSDART00000140039 GeneID:393686
KEGG:dre:393686 InParanoid:Q6P0V6 NextBio:20814689
ArrayExpress:Q6P0V6 Bgee:Q6P0V6 Uniprot:Q6P0V6
Length = 257
Score = 95 (38.5 bits), Expect = 0.00024, P = 0.00024
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 141 PETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 200
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 201 GVAMNPVEHP 210
>UNIPROTKB|E1BHY4 [details] [associations]
symbol:E1BHY4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 Pfam:PF00181 Pfam:PF03947
PIRSF:PIRSF002158 PROSITE:PS00467 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 GO:GO:0022625 Gene3D:4.10.950.10 InterPro:IPR014726
PANTHER:PTHR13691 GeneTree:ENSGT00390000009907 EMBL:DAAA02032881
IPI:IPI00710345 PRIDE:E1BHY4 Ensembl:ENSBTAT00000004630 OMA:KAGHAYH
NextBio:20867523 Uniprot:E1BHY4
Length = 257
Score = 94 (38.1 bits), Expect = 0.00031, P = 0.00031
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRR---AVVR 92
P ++ V+L G++KVI RA +G V+ K + KAG + +R +VR
Sbjct: 141 PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGCIDKPILKAGHAYHKYKAKRNCWPLVR 200
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 201 GVAMNPVEHP 210
>UNIPROTKB|F1NIX0 [details] [associations]
symbol:RPL8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IEA] InterPro:IPR002171 InterPro:IPR022666
InterPro:IPR022669 InterPro:IPR022671 InterPro:IPR023672
Pfam:PF00181 Pfam:PF03947 PIRSF:PIRSF002158 PROSITE:PS00467
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
Gene3D:4.10.950.10 InterPro:IPR014726 PANTHER:PTHR13691
GeneTree:ENSGT00390000009907 OMA:GRVIRNQ HAMAP:MF_01320_A
EMBL:AADN02011032 IPI:IPI00590272 Ensembl:ENSGALT00000026174
Uniprot:F1NIX0
Length = 269
Score = 94 (38.1 bits), Expect = 0.00034, P = 0.00034
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 38 PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQ--RSWLGRRAV---VR 92
P ++ V+L G++KVI RA +G V+ K + KAG+ + +R VR
Sbjct: 153 PETKKTRVKLPSGSKKVISSANRAVVGIVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVR 212
Query: 93 GVAMIPVDHP 102
GVAM PV+HP
Sbjct: 213 GVAMNPVEHP 222
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.438 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 129 129 0.00091 102 3 11 22 0.40 31
29 0.41 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 609 (65 KB)
Total size of DFA: 159 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.48u 0.12s 12.60t Elapsed: 00:00:01
Total cpu time: 12.48u 0.12s 12.60t Elapsed: 00:00:02
Start: Fri May 10 20:02:48 2013 End: Fri May 10 20:02:50 2013