BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043842
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92812|RM02_ORYSJ 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp.
japonica GN=RPL2 PE=2 SV=2
Length = 502
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 12 NDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSH 71
+D+ P + + KEP S+ CLVRL G EK+ID RCRATIG VSNP+H
Sbjct: 376 HDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNH 434
Query: 72 GAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 128
GA+KL KAGQ W GRR +VRGVAM PVDHPH + GR S +PWGKP K+G
Sbjct: 435 GARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRT-KGGRPSVSPWGKPTKAG 490
>sp|Q2F969|RM02_ORYSI 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp.
indica GN=RPL2 PE=2 SV=2
Length = 502
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 12 NDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSH 71
+D+ P + + KEP S+ CLVRL G EK+ID RCRATIG VSNP+H
Sbjct: 376 HDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNH 434
Query: 72 GAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 128
GA+KL KAGQ W GRR +VRGVAM PVDHPH + GR S +PWGKP K+G
Sbjct: 435 GARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRT-KGGRPSVSPWGKPTKAG 490
>sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2
PE=2 SV=1
Length = 502
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 12 NDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSH 71
+D+ P + + KEP S+ CLVRL G EK+ID RCRATIG VSNP+H
Sbjct: 376 HDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNH 434
Query: 72 GAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 128
GA+KL KAGQ W GRR +VRGVAM PVDHPH + GR S +PWGKP K+G
Sbjct: 435 GARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRT-KGGRPSVSPWGKPTKAG 490
>sp|P26859|RM02_MARPO 60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha
GN=RPL2 PE=3 SV=2
Length = 501
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 23 ASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQR 82
A+ + + Q E P C+VRL G +K+ID RCRATIG VSN +HG +K +KAGQ
Sbjct: 390 AAGTFAQIIQKVENTPQ---CIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQS 446
Query: 83 SWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 128
WLGRR +VRGVAM PVDHPH + GR S +PWGKP K G
Sbjct: 447 RWLGRRPIVRGVAMNPVDHPHGGGEGRT-KGGRPSVSPWGKPTKGG 491
>sp|A4YSJ5|RL2_BRASO 50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278)
GN=rplB PE=3 SV=1
Length = 277
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +VRL G ++++ RCR TIG VSNP H + KAG++ W+GRR RGVAM P+DH
Sbjct: 171 YVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|A5ELM4|RL2_BRASB 50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=rplB PE=3 SV=1
Length = 277
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +VRL G ++++ RCR TIG VSNP H + KAG++ W+GRR RGVAM P+DH
Sbjct: 171 YVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|C0R306|RL2_WOLWR 50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=rplB PE=3 SV=1
Length = 274
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 41 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
+Y L+RLR G ++I C+ATIG VSNP H +KL KAG+ WLG R VRGVAM PVD
Sbjct: 170 QYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRSRWLGIRPTVRGVAMNPVD 229
Query: 101 HPHVERSKSSGNNGRCSFTPWGKPCK 126
HPH + + GR TPWG K
Sbjct: 230 HPHGGGEGKT-SGGRHPVTPWGVATK 254
>sp|Q134T2|RL2_RHOPS 50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rplB PE=3 SV=1
Length = 278
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +VRL G ++++ RC ATIG VSNP H + KAG++ WLGRR RGV M P+DH
Sbjct: 171 YVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|Q73H89|RL2_WOLPM 50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3
SV=1
Length = 274
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 41 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
+Y L+RLR G ++I C+ATIG VSNP H +KL KAG+ WLG R VRG+AM PVD
Sbjct: 170 QYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRSRWLGIRPTVRGIAMNPVD 229
Query: 101 HPHVERSKSSGNNGRCSFTPWGKPCK 126
HPH + + GR TPWG K
Sbjct: 230 HPHGGGEGKT-SGGRHPVTPWGVATK 254
>sp|Q89J87|RL2_BRAJA 50S ribosomal protein L2 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplB PE=3 SV=1
Length = 277
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++RL G ++++ RCR TIG VSNP H + KAG+ WLGR+ RGV+M P+DH
Sbjct: 171 YVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRNRWLGRKPHNRGVSMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|B0U5B0|RL2_XYLFM 50S ribosomal protein L2 OS=Xylella fastidiosa (strain M12) GN=rplB
PE=3 SV=1
Length = 275
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 47/85 (55%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRATIG V N H +KL KAG + WLG R VRG AM PVDH
Sbjct: 171 YATLRLRSGEMRRVLAECRATIGEVGNEEHNLRKLGKAGAKRWLGVRPTVRGAAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH SG TPWG P K
Sbjct: 231 PHGGGEAKSGQGNPHPVTPWGVPTK 255
>sp|Q9PE73|RL2_XYLFA 50S ribosomal protein L2 OS=Xylella fastidiosa (strain 9a5c)
GN=rplB PE=3 SV=1
Length = 275
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 47/85 (55%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRATIG V N H +KL KAG + WLG R VRG AM PVDH
Sbjct: 171 YATLRLRSGEMRRVLAECRATIGEVGNEEHNLRKLGKAGAKRWLGVRPTVRGAAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH SG TPWG P K
Sbjct: 231 PHGGGEAKSGQGNPHPVTPWGVPTK 255
>sp|Q87E79|RL2_XYLFT 50S ribosomal protein L2 OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=rplB PE=3 SV=1
Length = 275
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 47/85 (55%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRATIG V N H +KL KAG + WLG R VRG AM PVDH
Sbjct: 171 YATLRLRSGEMRRVLAECRATIGEVGNEEHNLRKLGKAGAKRWLGVRPTVRGAAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH SG TPWG P K
Sbjct: 231 PHGGGEAKSGQGNPHPVTPWGVPTK 255
>sp|B2I8H2|RL2_XYLF2 50S ribosomal protein L2 OS=Xylella fastidiosa (strain M23) GN=rplB
PE=3 SV=1
Length = 275
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 47/85 (55%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRATIG V N H +KL KAG + WLG R VRG AM PVDH
Sbjct: 171 YATLRLRSGEMRRVLAECRATIGEVGNEEHNLRKLGKAGAKRWLGVRPTVRGAAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH SG TPWG P K
Sbjct: 231 PHGGGEAKSGQGNPHPVTPWGVPTK 255
>sp|A7HWR4|RL2_PARL1 50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1
Length = 278
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y L+RL G ++++ C A+IG VSNP H ++KAG+ WLG+R VRGV M PVDH
Sbjct: 171 YALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAGRNRWLGKRPHVRGVVMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|B2IK65|RL2_BEII9 50S ribosomal protein L2 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplB PE=3
SV=1
Length = 279
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +VRL G +++I +C AT+G VSNP H + KAG+ WLGRR RGV M PVDH
Sbjct: 171 YVIVRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRSRWLGRRPHNRGVTMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|Q211F1|RL2_RHOPB 50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplB PE=3 SV=1
Length = 277
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +VRL G ++++ RC ATIG VSNP H + KAG+ WLGR+ RGV M PVDH
Sbjct: 171 YVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRWLGRKPHNRGVTMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|B8ELG0|RL2_METSB 50S ribosomal protein L2 OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=rplB PE=3 SV=1
Length = 279
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++RL G +++I +C AT+G VSNP H + KAG+ WLGRR RGV M PVDH
Sbjct: 171 YVIIRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRSRWLGRRPHNRGVTMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|A7GK23|RL2_BACCN 50S ribosomal protein L2 OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=rplB PE=3 SV=1
Length = 276
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
M IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 MNIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLAT 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRC-- 116
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH G GR
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPH------GGGEGRAPI 241
Query: 117 ----SFTPWGKPC 125
+PWGKP
Sbjct: 242 GRKSPMSPWGKPT 254
>sp|Q31IX9|RL2_THICR 50S ribosomal protein L2 OS=Thiomicrospira crunogena (strain XCL-2)
GN=rplB PE=3 SV=1
Length = 275
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y LV+LR G + I CRATIG V N H +KL KAG + W G R VRGVAM PVDH
Sbjct: 172 YVLVKLRSGEMRKILADCRATIGEVGNQEHSLRKLGKAGAKRWKGVRPTVRGVAMNPVDH 231
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWG P K
Sbjct: 232 PHGGGEGRT-SGGRNPVTPWGVPTK 255
>sp|Q1QN27|RL2_NITHX 50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rplB PE=3 SV=1
Length = 277
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++RL G ++++ RCR IG VSNP H + KAG+ W+GRR RGV M P+DH
Sbjct: 171 YVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSIGKAGRTRWMGRRPHNRGVVMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|B3QBX7|RL2_RHOPT 50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplB PE=3 SV=1
Length = 278
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++R+ G +++I RC A IG VSNP H + KAG++ WLGRR RGV M P+DH
Sbjct: 171 YVILRMNSGEQRLIHGRCIAAIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|P60403|RL2_RHOPA 50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rplB PE=1 SV=1
Length = 278
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++R+ G +++I RC A IG VSNP H + KAG++ WLGRR RGV M P+DH
Sbjct: 171 YVILRMNSGEQRLIHGRCIAAIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|Q3SSW3|RL2_NITWN 50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=rplB PE=3 SV=1
Length = 277
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++RL G ++++ RCR IG VSNP H + KAG+ W+GRR RGV M P+DH
Sbjct: 171 YVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAGRTRWMGRRPHNRGVVMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|A9W4Q4|RL2_METEP 50S ribosomal protein L2 OS=Methylobacterium extorquens (strain
PA1) GN=rplB PE=3 SV=1
Length = 278
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RL G ++++ +C AT+G VSNP H L KAG+ WLG+R VRGVAM PVDH
Sbjct: 172 YVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNISLGKAGRNRWLGKRPHVRGVAMNPVDH 231
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWG P K
Sbjct: 232 PHGGGEGRT-SGGRNPVTPWGVPTK 255
>sp|B7L0R4|RL2_METC4 50S ribosomal protein L2 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=rplB PE=3 SV=1
Length = 278
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RL G ++++ +C AT+G VSNP H L KAG+ WLG+R VRGVAM PVDH
Sbjct: 172 YVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNISLGKAGRNRWLGKRPHVRGVAMNPVDH 231
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWG P K
Sbjct: 232 PHGGGEGRT-SGGRNPVTPWGVPTK 255
>sp|B3CN29|RL2_WOLPP 50S ribosomal protein L2 OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=rplB PE=3 SV=1
Length = 274
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 41 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
+Y L+RLR G ++I C+ATIG VSN H +KL KAG+ WLG R VRGVAM PVD
Sbjct: 170 QYVLLRLRSGQIRLILSSCKATIGVVSNLDHKNRKLGKAGRSRWLGIRPAVRGVAMNPVD 229
Query: 101 HPHVERSKSSGNNGRCSFTPWG 122
HPH + + GR TPWG
Sbjct: 230 HPHGGGEGKT-SGGRHPVTPWG 250
>sp|Q6HPQ5|RL2_BACHK 50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=rplB PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|Q63H87|RL2_BACCZ 50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L)
GN=rplB PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|B7HQU7|RL2_BACC7 50S ribosomal protein L2 OS=Bacillus cereus (strain AH187) GN=rplB
PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|C1ET42|RL2_BACC3 50S ribosomal protein L2 OS=Bacillus cereus (strain 03BB102)
GN=rplB PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|Q73F93|RL2_BACC1 50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 10987)
GN=rplB PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|B7JKC2|RL2_BACC0 50S ribosomal protein L2 OS=Bacillus cereus (strain AH820) GN=rplB
PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|Q81VS7|RL2_BACAN 50S ribosomal protein L2 OS=Bacillus anthracis GN=rplB PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|A0R8I3|RL2_BACAH 50S ribosomal protein L2 OS=Bacillus thuringiensis (strain Al
Hakam) GN=rplB PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|C3LJ85|RL2_BACAC 50S ribosomal protein L2 OS=Bacillus anthracis (strain CDC 684 /
NRRL 3495) GN=rplB PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|C3P9Q8|RL2_BACAA 50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248)
GN=rplB PE=3 SV=1
Length = 276
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 1 MRIP-GRITHMWNDLRVQPSRW-EASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPR 58
+ IP G + H ++ ++P R + S Q KE +Y LVRL G +++
Sbjct: 133 INIPVGTVVH---NIELKPGRGGQLVRSAGTSAQVLGKE--GKYVLVRLTSGEVRLVLSA 187
Query: 59 CRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSF 118
CRAT+G V N SH K+ KAG+ WLG+R VRG M PVDHPH S +
Sbjct: 188 CRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPM 247
Query: 119 TPWGKPC 125
+PWGKP
Sbjct: 248 SPWGKPT 254
>sp|Q3BWY0|RL2_XANC5 50S ribosomal protein L2 OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=rplB PE=3 SV=1
Length = 275
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 46/86 (53%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRATIG V N H +KL KAG + W G R VRG AM PVDH
Sbjct: 171 YATLRLRSGEMRKVPVECRATIGEVGNDEHNLEKLGKAGAKRWRGVRPTVRGAAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCKS 127
PH +G TPWG P K
Sbjct: 231 PHGGGEAKAGQGNPHPVTPWGVPTKG 256
>sp|Q8PNS1|RL2_XANAC 50S ribosomal protein L2 OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=rplB PE=3 SV=1
Length = 275
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 46/86 (53%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRATIG V N H +KL KAG + W G R VRG AM PVDH
Sbjct: 171 YATLRLRSGEMRKVPVECRATIGEVGNDEHNLEKLGKAGAKRWRGVRPTVRGAAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCKS 127
PH +G TPWG P K
Sbjct: 231 PHGGGEAKAGQGNPHPVTPWGVPTKG 256
>sp|Q5GWT7|RL2_XANOR 50S ribosomal protein L2 OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=rplB PE=3 SV=1
Length = 275
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 46/86 (53%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRATIG V N H +KL KAG + W G R VRG AM PVDH
Sbjct: 171 YATLRLRSGEMRKVPVECRATIGEVGNDEHNLEKLGKAGAKRWRGVRPTVRGAAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCKS 127
PH +G TPWG P K
Sbjct: 231 PHGGGEAKAGQGNPHPVTPWGVPTKG 256
>sp|Q2NZY8|RL2_XANOM 50S ribosomal protein L2 OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=rplB PE=3 SV=1
Length = 275
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 46/86 (53%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RLR G + + CRATIG V N H +KL KAG + W G R VRG AM PVDH
Sbjct: 171 YATLRLRSGEMRKVPVECRATIGEVGNDEHNLEKLGKAGAKRWRGVRPTVRGAAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCKS 127
PH +G TPWG P K
Sbjct: 231 PHGGGEAKAGQGNPHPVTPWGVPTKG 256
>sp|Q07KM1|RL2_RHOP5 50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain
BisA53) GN=rplB PE=3 SV=1
Length = 277
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +VRL G +++I RC ATIG VSNP H + KAG+ WLG R RGV M P+DH
Sbjct: 171 YVIVRLNSGEQRLIHGRCTATIGAVSNPDHMNISIGKAGRTRWLGWRPHNRGVVMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|B8GV55|RL2_THISH 50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=rplB PE=3 SV=1
Length = 274
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 41 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
++ +RLR G + + CRATIG VSN H +K KAG + WLG R VRG AM PVD
Sbjct: 170 QHATLRLRSGEMRKVPADCRATIGEVSNSEHSLRKFGKAGAKRWLGIRPTVRGTAMNPVD 229
Query: 101 HPHVERSKSSGNN-GRCSFTPWGKPCK 126
HPH G N G+ TPWG P K
Sbjct: 230 HPH---GGGEGRNFGKHPVTPWGVPTK 253
>sp|B1YGV3|RL2_EXIS2 50S ribosomal protein L2 OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=rplB PE=3 SV=1
Length = 276
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 23 ASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQR 82
A +S + + +D +Y +VRL+ G ++I CRAT+G V N H + KAG+
Sbjct: 158 AGTSAQLLGKD------GKYAIVRLQSGETRMILATCRATVGAVGNEEHELVNIGKAGRS 211
Query: 83 SWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRC------SFTPWGKPC 125
WLG+R VRG M PVDHPH G GR TPWGKP
Sbjct: 212 RWLGKRPTVRGSVMNPVDHPH------GGGEGRAPIGRSGPLTPWGKPA 254
>sp|B0UHW6|RL2_METS4 50S ribosomal protein L2 OS=Methylobacterium sp. (strain 4-46)
GN=rplB PE=3 SV=1
Length = 278
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RL G ++++ +C AT+G VSNP H L KAG++ WLGRR RGVAM P+DH
Sbjct: 172 YVTLRLNSGEQRLVHGQCYATVGAVSNPDHMNISLGKAGRKRWLGRRPHNRGVAMNPIDH 231
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWG P K
Sbjct: 232 PHGGGEGRT-SGGRHPVTPWGFPTK 255
>sp|B8IS88|RL2_METNO 50S ribosomal protein L2 OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=rplB PE=3 SV=1
Length = 278
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RL G ++++ +C AT+G VSNP H L KAG++ WLGRR RGVAM P+DH
Sbjct: 172 YVTLRLNSGEQRLVHGQCYATVGAVSNPDHMNISLGKAGRKRWLGRRPHNRGVAMNPIDH 231
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWG P K
Sbjct: 232 PHGGGEGRT-SGGRHPVTPWGFPTK 255
>sp|A5FZW2|RL2_ACICJ 50S ribosomal protein L2 OS=Acidiphilium cryptum (strain JF-5)
GN=rplB PE=3 SV=1
Length = 277
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y V+L G ++I C A+IG VSNP H ++L KAG++ WLGRR RGVAM PVDH
Sbjct: 171 YAQVKLMSGELRLIRGECMASIGAVSNPDHSNQQLGKAGRKRWLGRRPHNRGVAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
P + + + GR TPWGKP K
Sbjct: 231 P-LGGGEGRTSGGRNPVTPWGKPTK 254
>sp|B6JET6|RL2_OLICO 50S ribosomal protein L2 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplB PE=3 SV=1
Length = 278
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y ++RL G ++++ RC ATIG VSN H + KAG+ WLGRR RGV M P+DH
Sbjct: 171 YVILRLNSGEQRMVHGRCMATIGAVSNHDHMNTSIGKAGRTRWLGRRPHNRGVVMNPIDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
>sp|Q5GSU7|RL2_WOLTR 50S ribosomal protein L2 OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rplB PE=3 SV=1
Length = 274
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y L+RLR G +++ C+ATIG VSNP +KL KAG+ WLG R VRGVAM PVDH
Sbjct: 171 YVLLRLRSGQVRLVLSSCKATIGVVSNPDRKNRKLGKAGRSRWLGVRPTVRGVAMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWG 122
PH + + GR TPWG
Sbjct: 231 PHGGGEGKT-SGGRHPVTPWG 250
>sp|Q2RQW3|RL2_RHORT 50S ribosomal protein L2 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplB PE=3 SV=1
Length = 279
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 42 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDH 101
Y +RL G +++ C AT+G VSNP + +KL KAG+ W+GRR VRGV M PVDH
Sbjct: 171 YAQLRLSSGELRLVRGECLATVGAVSNPDNQNEKLGKAGRSRWMGRRPHVRGVVMNPVDH 230
Query: 102 PHVERSKSSGNNGRCSFTPWGKPCK 126
PH + + GR TPWGKP K
Sbjct: 231 PHGGGEGRT-SGGRHPVTPWGKPTK 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,145,305
Number of Sequences: 539616
Number of extensions: 1787648
Number of successful extensions: 4447
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2935
Number of HSP's gapped (non-prelim): 1056
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)