Query 043842
Match_columns 129
No_of_seqs 109 out of 1057
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 15:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_D 50S ribosomal protein L 100.0 1.9E-61 6.6E-66 393.2 7.3 122 4-128 135-257 (276)
2 3r8s_C 50S ribosomal protein L 100.0 1.4E-61 4.6E-66 393.3 6.3 121 4-128 133-254 (271)
3 3bbo_E Ribosomal protein L2; l 100.0 1.8E-61 6.2E-66 392.4 -0.3 122 4-128 130-253 (269)
4 3j21_B 50S ribosomal protein L 100.0 3.2E-55 1.1E-59 350.9 5.4 117 4-124 101-223 (239)
5 1giy_D 50S ribosomal protein L 100.0 1.8E-53 6.2E-58 328.6 10.5 100 4-104 74-178 (178)
6 1vq8_A 50S ribosomal protein L 100.0 2.3E-53 7.7E-58 340.2 4.7 111 4-117 99-214 (240)
7 3jyw_B 60S ribosomal protein L 100.0 2.4E-53 8.4E-58 340.5 3.5 116 4-121 105-227 (243)
8 3iz5_B 60S ribosomal protein L 100.0 7.9E-53 2.7E-57 340.3 4.8 111 4-116 106-222 (261)
9 4a17_A RPL8; eukaryotic riboso 100.0 9.5E-53 3.2E-57 340.1 4.9 116 4-121 107-229 (264)
10 2ftc_B Mitochondrial ribosomal 100.0 8.1E-34 2.8E-38 211.0 8.8 76 4-80 61-136 (136)
11 1rl2_A Protein (ribosomal prot 100.0 2.1E-29 7.2E-34 187.4 6.0 64 4-68 74-137 (137)
12 3es1_A Cupin 2, conserved barr 44.6 54 0.0019 24.0 5.9 70 3-79 73-143 (172)
13 3kdf_A Replication protein A 1 31.7 88 0.003 21.6 5.0 46 22-69 29-76 (121)
14 2pi2_E Replication protein A 1 29.7 95 0.0032 22.2 5.0 46 22-69 50-97 (142)
15 3d4r_A Domain of unknown funct 28.6 92 0.0031 23.3 4.9 59 3-66 94-152 (169)
16 2cr5_A Reproduction 8; UBX dom 23.0 57 0.0019 21.8 2.6 19 41-59 24-44 (109)
17 3qx1_A FAS-associated factor 1 21.9 63 0.0022 20.3 2.6 19 41-59 8-28 (84)
18 1oei_A Major prion protein; oc 20.8 75 0.0026 16.7 2.2 19 100-124 6-24 (26)
19 2dzk_A UBX domain-containing p 20.0 78 0.0027 21.2 2.8 21 39-59 12-34 (109)
No 1
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=100.00 E-value=1.9e-61 Score=393.20 Aligned_cols=122 Identities=31% Similarity=0.559 Sum_probs=117.3
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeeccccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRS 83 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~R 83 (129)
-||+||.|||||++||+|+||||||||||+|+.+ +++|++|||||||+|+|+++|+||||+|||.+|.+++++|||++|
T Consensus 135 ~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k-~~~~~~vrLPSGe~r~i~~~c~AtIG~Vsn~~~~~~~lgKAGr~r 213 (276)
T 3v2d_D 135 FIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGR-EGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIVLGKAGRSR 213 (276)
T ss_dssp GSCTTCEEESEESSTTSCEEESCSTTCCEEEEEE-ETTEEEEECTTSCEEEEETTCEEEESCBSCGGGGGCCCCSHHHHH
T ss_pred hCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEe-cCCEEEEECCCCCeEEEcccCeEEEEeecCcchhhcEeccCcccc
Confidence 3899999999999999999999999999999988 689999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeEEEeeceeCCCC-CCCCCCCCCCCCCCCCCCcccCCC
Q 043842 84 WLGRRAVVRGVAMIPVDHPHV-ERSKSSGNNGRCSFTPWGKPCKSG 128 (129)
Q Consensus 84 ~~G~RP~VRGvamNpvdHPhG-G~~k~~g~~gr~~~spwG~~~kg~ 128 (129)
|+|+||+|||||||||||||| |++++++ |++|+||||++|||+
T Consensus 214 w~g~rP~VRGVAMNPVDHPHGGGeGr~~~--g~~p~spwG~~~kG~ 257 (276)
T 3v2d_D 214 WLGRRPHVRGAAMNPVDHPHGGGEGRAPR--GRPPASPWGWQTKGL 257 (276)
T ss_dssp HTTBCCCCCGGGSCTTTCTTCCCSSCCCC--CSSCBCTTSCBCSSC
T ss_pred cCCCCCccCeEecCCccCCCcCcCCCCCC--CCCCcCcccccccCC
Confidence 999999999999999999999 6888864 699999999999996
No 2
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=100.00 E-value=1.4e-61 Score=393.27 Aligned_cols=121 Identities=31% Similarity=0.559 Sum_probs=116.1
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeeccccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRS 83 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~R 83 (129)
-||+||.|||||++||+|+||||||||||+|+.+ +++|++|||||||+|+|+++|+||||+|||.+|.+++|+|||++|
T Consensus 133 ~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k-~~~~~~vrLPSGe~r~i~~~c~ATIG~Vsn~~~~~~~lgKAGr~r 211 (271)
T 3r8s_C 133 NIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR-DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAAR 211 (271)
T ss_dssp GSCTTCEEESCCSSTTTCCCSCCSTTCCEEEEEC-STTEEEEECTTSCEEEEETTCEEEESCBSCSGGGGCCCCSHHHHH
T ss_pred hCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEe-cCCEEEEECCCCCeEEEcccCeEEEEeecCcchhhcEeccccccc
Confidence 4899999999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeEEEeeceeCCCC-CCCCCCCCCCCCCCCCCCcccCCC
Q 043842 84 WLGRRAVVRGVAMIPVDHPHV-ERSKSSGNNGRCSFTPWGKPCKSG 128 (129)
Q Consensus 84 ~~G~RP~VRGvamNpvdHPhG-G~~k~~g~~gr~~~spwG~~~kg~ 128 (129)
|+|+||+|||||||||||||| |++| ++ ||+|+||||++|||+
T Consensus 212 w~g~rP~VRGVAMNPVDHPHGGGeGk-~g--gr~p~tPWG~~tkG~ 254 (271)
T 3r8s_C 212 WRGVRPTVRGTAMNPVDHPHGGGEGR-NF--GKHPVTPWGVQTKGK 254 (271)
T ss_dssp TTTBCCCCCGGGSCTTTCSSCCCSSS-CC--CSCCBCTTSCBCTTC
T ss_pred CCCCCCccCeEeeCCccCCccCcCCC-CC--CCCCCCcccccccCc
Confidence 999999999999999999999 6777 53 699999999999996
No 3
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.8e-61 Score=392.36 Aligned_cols=122 Identities=30% Similarity=0.562 Sum_probs=116.8
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeeccccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRS 83 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~R 83 (129)
-||+||.|||||++||+|+||||||||||+|+.+ |++|++|||||||+|+|+++|+||||+|||.+|.+++|+|||++|
T Consensus 130 ~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k-e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAGr~r 208 (269)
T 3bbo_E 130 DMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAK-EGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKR 208 (269)
T ss_dssp GCSSCSSCCCCCSSSSCCCSSCCTTTCCCBCCSS-CSTTCCCBCSTTCBCCCCSSCEECSCCCCCSHHHHSCCCSSSSSS
T ss_pred cCCCCCEEEeEeccCCCCceEEeeCCCEEEEEEe-cCCEEEEECCCCCEEEEchhhheeEeeecCchhhhcchhhhhhcc
Confidence 4899999999999999999999999999999988 789999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeEEEeeceeCCCC-CCCCCCCCCCCC-CCCCCCcccCCC
Q 043842 84 WLGRRAVVRGVAMIPVDHPHV-ERSKSSGNNGRC-SFTPWGKPCKSG 128 (129)
Q Consensus 84 ~~G~RP~VRGvamNpvdHPhG-G~~k~~g~~gr~-~~spwG~~~kg~ 128 (129)
|+|+||+|||||||||||||| |+++++ +||+ |+||||++|||+
T Consensus 209 w~g~rP~VRGvAMNPVDHPHGGGeGr~~--~Gr~~p~tpWG~~~kg~ 253 (269)
T 3bbo_E 209 WLGKRPVVRGVVMNPVDHPHGGGEGRAP--IGRKSPTTPWGYPALGR 253 (269)
T ss_dssp TTTCSCSCCCCCSCTTTSSSCCSSSCCC--TTSSCCSSSCCCSCCCC
T ss_pred cCCCCCcccceeeccccCCCCcCCCcCC--CCCCCCCCCCccCcCCc
Confidence 999999999999999999999 677776 4785 999999999986
No 4
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.2e-55 Score=350.89 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=111.2
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeeccccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRS 83 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~R 83 (129)
-||+||.|||||++||+|+||+|||||||+|+.+ +++|++|||||||+|+|+++|+||||+|||.+|.+++|+|||++|
T Consensus 101 ~iP~GT~I~NIE~~pG~gg~laRsAGt~A~ii~k-~~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAGr~r 179 (239)
T 3j21_B 101 KIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR-EPDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAY 179 (239)
T ss_dssp TSCTTCEEESCCSSSSSCCCSCCSTTCCEEEEEE-CSSCEEEECTTSCEEEECTTCEEEESCBSCCSTTTSCCCSHHHHH
T ss_pred ccCCCCEEEeEEecCCCceeEEEecCCeEEEEEe-cCCEEEEEcCCCCEEEEeccCeEEEeeccCcccccceeeecChhh
Confidence 4899999999999999999999999999999988 689999999999999999999999999999999999999999999
Q ss_pred cc-----CCCceeeEEEeeceeCCCCCCCCCCCCCCCC-CCCCCCcc
Q 043842 84 WL-----GRRAVVRGVAMIPVDHPHVERSKSSGNNGRC-SFTPWGKP 124 (129)
Q Consensus 84 ~~-----G~RP~VRGvamNpvdHPhGG~~k~~g~~gr~-~~spwG~~ 124 (129)
|+ |+||+||||||||||||||| ++++ +||+ |+|+|.-+
T Consensus 180 ~~~k~k~g~rP~VRGVAMNPVDHPHGG-g~~~--~Grps~vsr~app 223 (239)
T 3j21_B 180 YKYKARNKFWPTPRGVKMNAVNHPFGG-KEHH--PGKPTTTSRRAPP 223 (239)
T ss_dssp HHHTSSCCCCSCCCSTTSCTTTCSSCC-SSSS--CSSCSCBCSSCCT
T ss_pred ccchhhcCCCceecceeeccccCCCCC-CCCC--CCccCCcCCCCCC
Confidence 99 99999999999999999999 8886 5786 89999644
No 5
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=100.00 E-value=1.8e-53 Score=328.64 Aligned_cols=100 Identities=29% Similarity=0.447 Sum_probs=98.3
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeeccccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRS 83 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~R 83 (129)
-||+||.|||||++||+|+||+|||||||+|+.+ +++|++|||||||+|+|+++|+||||+|||.+|.+++++|||++|
T Consensus 74 ~iP~Gt~I~NIE~~pG~gg~laRsAGt~a~ii~k-e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG~~r 152 (178)
T 1giy_D 74 NIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK-EGKYVIVRLASGEVRMILGKCRATVGEVGNGGRTDKPFVKAGNKH 152 (178)
T ss_pred cCCCCCEEEeEeccCCCCeEEEEeCCCeEEEEEe-cCCeEEEECCCCCEEEEcccCcEEEEEecCcchhcCeecccchhh
Confidence 4899999999999999999999999999999988 789999999999999999999999999999999999999999999
Q ss_pred ccC-----CCceeeEEEeeceeCCCC
Q 043842 84 WLG-----RRAVVRGVAMIPVDHPHV 104 (129)
Q Consensus 84 ~~G-----~RP~VRGvamNpvdHPhG 104 (129)
|+| +||+||||||||||||||
T Consensus 153 ~~gk~k~~~rP~VRGvAMNpvDHPHG 178 (178)
T 1giy_D 153 HKMKARGTKWPNVRGVAMNAVDHPFG 178 (178)
T ss_pred cCCCccCCcCCccceeeeCCccCCCC
Confidence 999 999999999999999998
No 6
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=2.3e-53 Score=340.24 Aligned_cols=111 Identities=28% Similarity=0.366 Sum_probs=103.9
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeeccccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRS 83 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~R 83 (129)
-||+||.|||||++||+|+||+|||||||+|+.+ |++|++|||||||+|+|+++|+||||+|||.+|.+++|+|||++|
T Consensus 99 ~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k-e~~~~~vrLPSGe~r~v~~~crAtIG~Vsn~~~~~~~lgKAG~~r 177 (240)
T 1vq8_A 99 EIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH-DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKH 177 (240)
T ss_dssp GSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEEC-CSSCEEEECTTSCEEEECTTCEEEESCBTTTTTTTSCCCSHHHHH
T ss_pred CCCCCCEEEeEeccCCCCceEEEeCCCeEEEEEe-cCCEEEEECCCCCEEEEechheeeEEEecCcchhccccccCcccc
Confidence 4899999999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred ccC-----CCceeeEEEeeceeCCCCCCCCCCCCCCCCC
Q 043842 84 WLG-----RRAVVRGVAMIPVDHPHVERSKSSGNNGRCS 117 (129)
Q Consensus 84 ~~G-----~RP~VRGvamNpvdHPhGG~~k~~g~~gr~~ 117 (129)
|++ +||+|||||||||||||||++..+ +||++
T Consensus 178 ~~gk~k~~~rP~VRGvAMNPVDHPHGGGeg~~--~Gr~s 214 (240)
T 1vq8_A 178 HKMKARGTKWPNVRGVAMNAVDHPFGGGGRQH--PGKPK 214 (240)
T ss_dssp HHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCC--CSSCS
T ss_pred ccccccCCCCCceeeeeeccccCCCCCCCCCC--CCCCC
Confidence 998 999999999999999999544333 47764
No 7
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B
Probab=100.00 E-value=2.4e-53 Score=340.54 Aligned_cols=116 Identities=26% Similarity=0.312 Sum_probs=106.4
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEe-cCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeecccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKE-PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQR 82 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~-~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~ 82 (129)
-||+||.|||||++||+|+||+|||||||+|+.+ +|++|++|||||||+|+|+++|+||||+|||.+|.+++|+|||++
T Consensus 105 ~IP~GT~IhNIE~~pG~gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~c~ATIG~Vsn~~~~~~~l~KAGr~ 184 (243)
T 3jyw_B 105 SVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRA 184 (243)
T ss_dssp SSCTTEEEESBCCSSCCSCCBCCSSSCCEEECCCSSSCSSBCEECSSSCCCCBSSCCEEEESCCSCCCSSSSCCSCSTTT
T ss_pred cCCCCCEEEEEEecCCCcceEEEecCCeEEEEEEccCCCEEEEECCCCCEEEEeccCeEEEEeccCCccccceecccChh
Confidence 4899999999999999999999999999999976 358999999999999999999999999999999999999999999
Q ss_pred ccc-----CCCceeeEEEeeceeCCCCCCCCCCCCCCCC-CCCCC
Q 043842 83 SWL-----GRRAVVRGVAMIPVDHPHVERSKSSGNNGRC-SFTPW 121 (129)
Q Consensus 83 R~~-----G~RP~VRGvamNpvdHPhGG~~k~~g~~gr~-~~spw 121 (129)
||+ ++||+|||||||||||||||+++.. +|++ ++|.+
T Consensus 185 r~~~k~k~~~rP~VRGVAMNpVDHPHGGGe~q~--iG~pstv~r~ 227 (243)
T 3jyw_B 185 FHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQH--IGKASTISRG 227 (243)
T ss_dssp TTSTTTSCSCCSCCCTTTSCTTTSTTCCTTTTC--CSSCSEECSS
T ss_pred hhhhhccCCCCCccCceeeCCccCCCCCCCCCC--CCCCCCcCCC
Confidence 998 9999999999999999999766553 5776 55543
No 8
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=100.00 E-value=7.9e-53 Score=340.29 Aligned_cols=111 Identities=23% Similarity=0.301 Sum_probs=104.0
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEe-cCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeecccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKE-PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQR 82 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~-~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~ 82 (129)
-||+||.|||||++||+|+||+|||||||+|+.+ +|++|++|||||||+|+|+++|+||||+|||.+|.+++|+|||++
T Consensus 106 ~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~CrATIG~Vsn~~~~~k~lgKAGr~ 185 (261)
T 3iz5_B 106 SVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNA 185 (261)
T ss_dssp GSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECSSCSSCEEEECTTSCEEEECTTCEEEESCBSSTTTTTSCCCCHHHH
T ss_pred cCCCCCEEEEEEecCCCcceEEEecCCeEEEEEeccCCCEEEEECCCCCEEEEecCCcEEEEEecCCccccceecccchh
Confidence 3899999999999999999999999999999977 358999999999999999999999999999999999999999999
Q ss_pred ccc-----CCCceeeEEEeeceeCCCCCCCCCCCCCCCC
Q 043842 83 SWL-----GRRAVVRGVAMIPVDHPHVERSKSSGNNGRC 116 (129)
Q Consensus 83 R~~-----G~RP~VRGvamNpvdHPhGG~~k~~g~~gr~ 116 (129)
||+ |+||+|||||||||||||||+++.. +|++
T Consensus 186 r~~~k~k~g~rP~VRGVAMNPVDHPHGGGe~q~--iG~p 222 (261)
T 3iz5_B 186 YHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQH--IGHA 222 (261)
T ss_dssp HHHHHTSSCCCSCCCTTTSCTTTCTTCCSSSCC--CSSC
T ss_pred hhhhhccCCCCCccceeeeCCccCCCCCCCCCC--CCCC
Confidence 999 9999999999999999999666553 5776
No 9
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=100.00 E-value=9.5e-53 Score=340.12 Aligned_cols=116 Identities=26% Similarity=0.324 Sum_probs=106.5
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEe-cCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeecccccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKE-PTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQR 82 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~-~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG~~ 82 (129)
-||+||.|||||++||+|+||+|||||||+|+.+ +|++|++|||||||+|+|+++|+||||+|||.+|.+++|+|||++
T Consensus 107 ~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~CrATIG~Vsn~~~~~~~l~KAGr~ 186 (264)
T 4a17_A 107 RIPEGTVVCNVEEKVGDRGTFSRASGCYATIIGHSEDGDKTRIRLPSGARKTIPGSCRATVGIVAGGGRTDKPILKAGNQ 186 (264)
T ss_dssp GSCTTCEEESBCSSTTCSCCBCCSTTCCEEEEEECSSSCEEEEECTTSCEEEEETTCEEEESCBSSTTGGGSCCCCHHHH
T ss_pred hCCCCCEEEEEEecCCCcceEEEeCCCeEEEEEEccCCCEEEEECCCCCEEEEeccCcEEEEeccCCccccceeeecchh
Confidence 3899999999999999999999999999999976 358999999999999999999999999999999999999999999
Q ss_pred ccc-----CCCceeeEEEeeceeCCCCCCCCCCCCCCCC-CCCCC
Q 043842 83 SWL-----GRRAVVRGVAMIPVDHPHVERSKSSGNNGRC-SFTPW 121 (129)
Q Consensus 83 R~~-----G~RP~VRGvamNpvdHPhGG~~k~~g~~gr~-~~spw 121 (129)
||+ ++||+|||||||||||||||+++.. +|++ ++|.+
T Consensus 187 r~~~k~k~~~rP~VRGVAMNPVDHPHGGGe~q~--iG~pstv~r~ 229 (264)
T 4a17_A 187 FHKYARKRKSWPRVRGVAMNPVDHPHGGGNHQH--IGHPATVSKW 229 (264)
T ss_dssp HHHHHTSSCCCSCCCTTTSCTTTCSSCCSSSCC--CCSCSEECTT
T ss_pred hhhhhccCCCCCCccceeeCCccCCCCCCCCCC--CCCCCCccCC
Confidence 997 9999999999999999999666553 5776 55544
No 10
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=100.00 E-value=8.1e-34 Score=210.99 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=74.2
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeecccc
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAG 80 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKAG 80 (129)
-||+||.|||||++||+|+||+|||||||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|+++++||||
T Consensus 61 ~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~k-e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG 136 (136)
T 2ftc_B 61 ALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRK-VNGTAIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAG 136 (136)
T ss_pred ccCCCCEEEEEeccCCCCcEEEEeCCCeEEEEEe-cCCEEEEECCCCCeEEECcCCcEEEEEecChhhccceeccCC
Confidence 3899999999999999999999999999999998 789999999999999999999999999999999999999998
No 11
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=99.95 E-value=2.1e-29 Score=187.39 Aligned_cols=64 Identities=23% Similarity=0.435 Sum_probs=61.3
Q ss_pred CccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeC
Q 043842 4 PGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSN 68 (129)
Q Consensus 4 ~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn 68 (129)
-||+||.|||||++||+|+||+|||||||+|+.+ ++++++|||||||+|+|+++|+||||+|||
T Consensus 74 ~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~k-e~~~~~vrLPSGe~r~v~~~c~AtIG~VsN 137 (137)
T 1rl2_A 74 NIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK-EGKYVIVRLASGEVRMILGKCRATVGEVGN 137 (137)
T ss_dssp GSCTTCEEESEESSTTSCEEESSSSSCCEEEEEE-ETTEEEEECTTSCEEEEETTSEEEESCCC-
T ss_pred hCCCCCEEEEEEccCCCCcEEEEeCCCeEEEEEE-cCCEEEEECCCCCeEEECCcCcEEEEEccC
Confidence 3899999999999999999999999999999988 789999999999999999999999999998
No 12
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=44.60 E-value=54 Score=23.97 Aligned_cols=70 Identities=6% Similarity=-0.006 Sum_probs=47.8
Q ss_pred cCccccceEEEeeEeCCCCeeEEecCCC-ceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCCCccceeeccc
Q 043842 3 IPGRITHMWNDLRVQPSRWEASSSCRDV-NQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKA 79 (129)
Q Consensus 3 ~~~p~Gt~I~nIE~~pg~gg~l~RsAGt-~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~~~~~~~~gKA 79 (129)
++.|-|+.+.-+++.||....+-+-.+. |..|++ +.+.|.|-+|+...+..-... + -++..|..++.+..
T Consensus 73 l~~~~G~~~~~v~l~PG~~~~~H~H~~eE~~~VLe----Gel~l~ld~ge~~~L~~GDsi-~--~~g~~H~~~N~g~~ 143 (172)
T 3es1_A 73 LTLDGGSVIRVVDMLPGKESPMHRTNSIDYGIVLE----GEIELELDDGAKRTVRQGGII-V--QRGTNHLWRNTTDK 143 (172)
T ss_dssp SSTTCSEEEEEEEECTTCBCCCBCCSEEEEEEEEE----SCEEEECGGGCEEEECTTCEE-E--ECSCCBEEECCSSS
T ss_pred ccCCCCeEEEEEEECCCCCCCCeecCceEEEEEEe----CEEEEEECCCeEEEECCCCEE-E--eCCCcEEEEeCCCC
Confidence 4678899999999999987766665442 332322 356778877777777666654 4 36777777776553
No 13
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=31.74 E-value=88 Score=21.65 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=31.2
Q ss_pred eeEEec--CCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCC
Q 043842 22 EASSSC--RDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNP 69 (129)
Q Consensus 22 g~l~Rs--AGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~ 69 (129)
+++.+. .|..++|..- |+..++|+|++...-.+ ....=+||+|.+.
T Consensus 29 GkV~~~~~~g~~~~l~s~-Dg~~Vtv~l~~p~~~~l-~~~vEViG~V~~~ 76 (121)
T 3kdf_A 29 GRLEKIHPTGKMFILSDG-EGKNGTIELMEPLDEEI-SGIVEVVGRVTAK 76 (121)
T ss_dssp EEEEEECTTSSEEEEECT-TSCEEEEECSSCCSSCC-CSEEEEEEEECTT
T ss_pred EEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCccc-CcEEEEEEEECCC
Confidence 344433 6777777765 78899999998321122 4477889998875
No 14
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=29.66 E-value=95 Score=22.21 Aligned_cols=46 Identities=7% Similarity=-0.085 Sum_probs=31.4
Q ss_pred eeEEec--CCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEeeeCC
Q 043842 22 EASSSC--RDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNP 69 (129)
Q Consensus 22 g~l~Rs--AGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~vsn~ 69 (129)
+++.+. .|..++|..- |+..++|+|++.-. .......=+||+|.+.
T Consensus 50 GkV~~~~~~G~~~~l~s~-Dg~~VtV~l~~pL~-~~~~~~VEViG~V~~~ 97 (142)
T 2pi2_E 50 GRLEKIHPTGKMFILSDG-EGKNGTIELMEPLD-EEISGIVEVVGRVTAK 97 (142)
T ss_dssp EEEEEECTTSSEEEEECT-TSCEEEEECSSCCS-SCCCSEEEEEEEECTT
T ss_pred EEEeEEcCCCCEEEEEeC-CCcEEEEEeCCCCC-ccCCCEEEEEEEECCC
Confidence 455566 7788877765 78899999986311 1125677888998774
No 15
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=28.63 E-value=92 Score=23.33 Aligned_cols=59 Identities=8% Similarity=-0.032 Sum_probs=42.5
Q ss_pred cCccccceEEEeeEeCCCCeeEEecCCCceEEEEecCCCeEEEEecCCceEEecCCCceeEEee
Q 043842 3 IPGRITHMWNDLRVQPSRWEASSSCRDVNQDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTV 66 (129)
Q Consensus 3 ~~~p~Gt~I~nIE~~pg~gg~l~RsAGt~a~ii~~~~~~~~~ikLPSGe~r~v~~~c~AtiG~v 66 (129)
+.++.||.++.|+. +|.+..-.++.=..|.+ .+.++.|.=-.||+|.+.+-|-.||=-|
T Consensus 94 ~~lkkGt~L~lvpa---eG~~V~~i~~~G~rV~k--gd~lA~i~T~KGEVR~i~spv~G~Vv~v 152 (169)
T 3d4r_A 94 TYLKAGTKLISVPA---EGYKVYPIMDFGFRVLK--GYRLATLESKKGDLRYVNSPVSGTVIFM 152 (169)
T ss_dssp EEECTTCBCEEEEE---CSSEEEECCCCSEEECT--TCEEEEEECTTCCEEEEECSSSEEEEEE
T ss_pred EEEcCCCEEEEEEe---CceEEEEEcCcCcEecc--CCeEEEEEecCceEEEecCCCcEEEEEE
Confidence 34677888877764 35666656655555544 3678999999999999999998887544
No 16
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=23.00 E-value=57 Score=21.83 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=13.6
Q ss_pred CeEEEEecCCc--eEEecCCC
Q 043842 41 RYCLVRLRCGN--EKVIDPRC 59 (129)
Q Consensus 41 ~~~~ikLPSGe--~r~v~~~c 59 (129)
-.+.||||+|+ +++|+.+.
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~ 44 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSW 44 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 46778899997 45676654
No 17
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=21.89 E-value=63 Score=20.30 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=13.4
Q ss_pred CeEEEEecCCc--eEEecCCC
Q 043842 41 RYCLVRLRCGN--EKVIDPRC 59 (129)
Q Consensus 41 ~~~~ikLPSGe--~r~v~~~c 59 (129)
-.+.||||+|+ ++.|+.+.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~ 28 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASN 28 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 46788999997 45666553
No 18
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=20.76 E-value=75 Score=16.68 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=9.7
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCcc
Q 043842 100 DHPHVERSKSSGNNGRCSFTPWGKP 124 (129)
Q Consensus 100 dHPhGG~~k~~g~~gr~~~spwG~~ 124 (129)
-|||||.= |.|--.-||.+
T Consensus 6 gqp~gg~w------gqphgg~wgqp 24 (26)
T 1oei_A 6 GQPHGGGW------GQPHGGGWGQP 24 (26)
T ss_dssp SSTTSSSS------TTTCSSSSSCC
T ss_pred CCccCCcC------CCCCCCcCCCC
Confidence 37887432 23323347765
No 19
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=20.05 E-value=78 Score=21.20 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=14.5
Q ss_pred CCCeEEEEecCCc--eEEecCCC
Q 043842 39 TSRYCLVRLRCGN--EKVIDPRC 59 (129)
Q Consensus 39 ~~~~~~ikLPSGe--~r~v~~~c 59 (129)
..-.+.||||+|+ ++.|+.+.
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~ 34 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDA 34 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTS
T ss_pred CcEEEEEECCCCCEEEEEeCCCC
Confidence 3457788999998 45666543
Done!