RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043842
         (129 letters)



>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein
           L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
          Length = 147

 Score = 69.8 bits (171), Expect = 5e-17
 Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 41  RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWL-----GRRAVVRGVA 95
              +V+L  G  K +DP+CRATIG V+      K   KAG +         +   VRGVA
Sbjct: 44  NVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVA 103

Query: 96  MIPVDHPH--VERSKSSGNNGRCSFTPWGKPCK 126
           M  VDHP     R             P G+   
Sbjct: 104 MNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 136


>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
           L2 {Escherichia coli [TaxId: 562]}
          Length = 145

 Score = 67.6 bits (165), Expect = 4e-16
 Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 41  RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
            Y  +RLR G  + ++  CRAT+G V N  H  + L KAG   W G R  VRG AM PVD
Sbjct: 45  AYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVD 104

Query: 101 HPHVERSKSSGNNGRCSFTPWGKPCK 126
           HPH      +   G+   TPWG   K
Sbjct: 105 HPHGGGEGRNF--GKHPVTPWGVQTK 128


>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
           L2 {Thermus thermophilus [TaxId: 274]}
          Length = 147

 Score = 64.5 bits (157), Expect = 6e-15
 Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 41  RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVD 100
            Y ++RL  G  + +   C AT+G V N  H    L KAG+  WLGRR  VRG AM PVD
Sbjct: 45  DYVILRLPSGELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVD 104

Query: 101 HPHV-ERSKSSGNNGRCSFTPWGKPCK 126
           HPH     ++    GR   +PWG   K
Sbjct: 105 HPHGGGEGRAPR--GRPPASPWGWQTK 129


>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal
          protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 70

 Score = 36.6 bits (85), Expect = 6e-05
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 42 YCLVRLRCGNEKVIDPRCRATIGTV 66
          Y +VRL  G  ++I  +CRAT+G V
Sbjct: 45 YVIVRLASGEVRMILGKCRATVGEV 69


>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing
          protein 8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 84

 Score = 29.7 bits (67), Expect = 0.032
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 24 SSSCRDVNQDFEKEP--TSRYCLVRLRCGNEKVIDPRCR 60
           ++C++V     +    T RY L+      E+ + P   
Sbjct: 20 VTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHEN 58


>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
           and C-terminal domains {Streptococcus mutans [TaxId:
           1309]}
          Length = 317

 Score = 25.6 bits (55), Expect = 2.1
 Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 62  TIGTVSNPSH-GAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPH 103
            I   +N ++    +  K  ++ +  ++     +  +P D   
Sbjct: 258 LIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSDFAV 300


>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion
           and metastasis inducing protein 1) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 162

 Score = 25.2 bits (55), Expect = 2.6
 Identities = 10/43 (23%), Positives = 14/43 (32%)

Query: 74  KKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRC 116
           KKL  + + S        R   MIP +   V    S+      
Sbjct: 73  KKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANA 115


>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 23.8 bits (51), Expect = 3.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 76 LSKAGQRSWLGRRAVV 91
          + K GQR W  R AV+
Sbjct: 35 IEKEGQRKWYKRMAVI 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,790
Number of extensions: 21603
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 8
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)